Psyllid ID: psy12695

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MDHDECADDVMMIYEWRVYIMVLVCTGCLQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIILLKAKRKRYADVNRRYLEDKCESNHQQSKPLTVNKMDRPPPVPSAVPAVPLVPPHPPPRNEYSSVPLSDTTRGPEPRDKIDHEENIDK
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEcccccccEEEccccccccccccccccccEEEcccccccHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccEEEEEccEEEccccccccccccEEEEEcccccEEEEEEEEccccccEEEEEEEEccccEEEEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEEcEEccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccccccEEEEEccccccccccccccccEEEEcccccccHHHHcccccccEEEccccccEEccHHHHHccccccEEEcccccccEcccHHccccccccHHHHcccccEEEccccEEEEcccEEEEEEEEEcccccEEEEEEcccEEcccccccccccEEEEEccccccccEEEEEEEEEccccEEEEEEEcccccEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHccccccEEEEcccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHccc
Coil and Loop (DISEMBL)
MDHDECADDVMMIYEWRVYIMVLVCTGCLqvfaecpstceckwkggketvlckaknfttipeqldvgtqvldlsdnfldrYTFRKLINLVELdlsynqiqfvpsHILDSILELRElklsgnpiqkitheafinvpklnledfacspnirpitpdvtaeenenvtlscratgspvpkiKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTmsdsgiytcrakngagevftNISLNVIKVEtavaqpdpvYLVASLTTVVTIILTACFVVLCIILLKAKRKRYADVNRRYLEDkcesnhqqskpltvnkmdrpppvpsavpavplvpphppprneyssvplsdttrgpeprdkidheenidk
Flexible Loop (DISEMBL)
MDHDECADDVMMIYEWRVYIMVLVCTGCLQVFAECPSTCECKWKGGKETVLCKAKNFttipeqldvgtQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTlscratgspvpkiKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIILLKAKRKRYADVNRRYledkcesnhqqskpltvnkmdrpPPVPSAVPAVPLVPphppprneyssvplsdttrgpeprdkidheenidk
Low Complexity Region (SEG)
MDHDECADDVMMIYEWRVYIMVLVCTGCLQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIILLKAKRKRYADVNRRYLEDKCESNHQQSKPLTVNKMDRpppvpsavpavplvpphpppRNEYSSVPLSDTTRGPEPRDKIDHEENIDK
Disordered region (IsUnstruct)
*****CADDVMMIYEWRVYIMVLVCTGCLQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIILLKAKRKRYADVNRRYL***********************************************************************
Disordered Region (DISOPRED)
******A*DVMMIYEWRVYIMVLVCTGCLQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIILLK*************************************************************************************
Disordered Region (DISEMBL)
MDHDECADDVMMIYEWRVYIMVLVCTGCLQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIILLKAKRKRYADVNRRYLED********SKPLTVNKMDRPPPVPSAVPAVPLVPPHPPPRNE***************RDKIDHEENIDK
Disordered Region (DISPRO)
**HDECADDVMMIYEWRVYIMVLVCTGCLQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIILLKAKRKRYA****RYLEDKCESNHQQSKPLTVNKMDRPPP***********************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDHDECADDVMMIYEWRVYIMVLVCTGCLQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIILLKAKRKRYADVNRRYLEDKCESNHQQSKPLTVNKMDRPPPVPSAVPAVPLVPPHPPPRNEYSSVPLSDTTRGPEPRDKIDHEENIDK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	369	2.2.26 [Sep-21-2011]
Q8BXA0	719	Leucine-rich repeat and f	yes	N/A	0.501	0.257	0.274	4e-10
D4A1J9	719	Leucine-rich repeat and f	yes	N/A	0.501	0.257	0.274	7e-10
Q6EMK4	673	Vasorin OS=Homo sapiens G	yes	N/A	0.271	0.148	0.358	8e-10
Q96NI6	719	Leucine-rich repeat and f	no	N/A	0.501	0.257	0.274	1e-09
Q149C3	593	Leucine-rich repeat and i	no	N/A	0.292	0.182	0.327	5e-09
O15394	837	Neural cell adhesion mole	no	N/A	0.192	0.084	0.414	1e-08
Q9CZT5	673	Vasorin OS=Mus musculus G	no	N/A	0.271	0.148	0.339	1e-08
P59035	257	Leucine-rich repeat-conta	no	N/A	0.281	0.404	0.342	2e-08
P59034	257	Leucine-rich repeat-conta	no	N/A	0.281	0.404	0.342	3e-08
A8WGA3	687	Leucine-rich repeat and f	no	N/A	0.430	0.231	0.258	3e-08

>sp|Q8BXA0|LRFN5_MOUSE Leucine-rich repeat and fibronectin type-III domain-containing protein 5 OS=Mus musculus GN=Lrfn5 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 105/251 (41%), Gaps = 66/251 (26%)

Query: 56  NFTTIP----EQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVP----- 103
           N  TIP    E++ V    L L  N +D   + TF  L  +  LD++ N++Q +P     
Sbjct: 158 NLETIPWDAVEKM-VSLHTLSLDHNMIDNIPKGTFSHLHKMTRLDVTSNKLQKLPPDPLF 216

Query: 104 --SHIL--DSILELRELKLS--GNPIQ------------------------KITHEAFIN 133
             + +L    I+      LS  GNP+                          +T   F +
Sbjct: 217 QRAQVLATSGIISPSTFALSFGGNPLHCNCELLWLRRLSREDDLETCASPALLTGRYFWS 276

Query: 134 VPKLNLEDFACSPN-IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE-KIIANISS 191
           +P+   E+F C P  I   T ++   E +  TL C+A G P P I WI  E K+I+N + 
Sbjct: 277 IPE---EEFLCEPPLITRHTHEMRVLEGQRATLRCKARGDPEPAIHWISPEGKLISNATR 333

Query: 192 GLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV---- 247
            L   N              L I+  T+ D+G +TC A N AGE    + L++IK+    
Sbjct: 334 SLVYDN------------GTLDILITTVKDTGAFTCIASNPAGEATQTVDLHIIKLPHLL 381

Query: 248 --ETAVAQPDP 256
                + +PDP
Sbjct: 382 NSTNHIHEPDP 392

Cell adhesion molecule that mediates homophilic cell-cell adhesion in a Ca(2+)-independent manner. Promotes neurite outgrowth in hippocampal neurons.
Mus musculus (taxid: 10090)

>sp|D4A1J9|LRFN5_RAT Leucine-rich repeat and fibronectin type-III domain-containing protein 5 OS=Rattus norvegicus GN=Lrfn5 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 105/251 (41%), Gaps = 66/251 (26%)

Query: 56  NFTTIP----EQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVP----- 103
           N  TIP    E++ V    L L  N +D   + TF  L  +  LD++ N++Q +P     
Sbjct: 158 NLETIPWDAVEKM-VSLHTLSLDHNMIDNIPKGTFSHLHKMTRLDVTSNKLQKLPPDPLF 216

Query: 104 --SHIL--DSILELRELKLS--GNPIQ------------------------KITHEAFIN 133
             + +L    I+      LS  GNP+                          +T   F +
Sbjct: 217 QRAQVLATSGIISPSTFALSFGGNPLHCNCELLWLRRLSREDDLETCASPALLTGRYFWS 276

Query: 134 VPKLNLEDFACSPN-IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE-KIIANISS 191
           +P+   E+F C P  I   T ++   E +  TL C+A G P P I WI  E K+I+N + 
Sbjct: 277 IPE---EEFLCEPPLITRHTHEMRVLEGQRATLRCKARGDPEPAIHWISPEGKLISNATR 333

Query: 192 GLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV---- 247
            L   N              L I+  T+ D+G +TC A N AGE    + L++IK+    
Sbjct: 334 SLVYDN------------GTLDILITTVKDTGAFTCIASNPAGEATQTMDLHIIKLPHLL 381

Query: 248 --ETAVAQPDP 256
                + +PDP
Sbjct: 382 NSTNNIHEPDP 392

Cell adhesion molecule that mediates homophilic cell-cell adhesion in a Ca(2+)-independent manner. Promotes neurite outgrowth in hippocampal neurons.

Rattus norvegicus (taxid: 10116)

>sp|Q6EMK4|VASN_HUMAN Vasorin OS=Homo sapiens GN=VASN PE=1 SV=1

 Score = 65.1 bits (157), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 6/106 (5%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQL---DVGTQVLDLSDNFLDRYTFRKLINLVE 91
           CPS C+C      +TV C A+  TT+P  +    VG  V +     LD  +F  L  L  
Sbjct: 24  CPSGCQCSQP---QTVFCTARQGTTVPRDVPPDTVGLYVFENGITMLDAGSFAGLPGLQL 80

Query: 92  LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
           LDLS NQI  +PS +   +  L  L L+ N + +IT+E F  + +L
Sbjct: 81  LDLSQNQIASLPSGVFQPLANLSNLDLTANRLHEITNETFRGLRRL 126

May act as an inhibitor of TGF-beta signaling.

Homo sapiens (taxid: 9606)

>sp|Q96NI6|LRFN5_HUMAN Leucine-rich repeat and fibronectin type-III domain-containing protein 5 OS=Homo sapiens GN=LRFN5 PE=1 SV=2

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 105/251 (41%), Gaps = 66/251 (26%)

Query: 56  NFTTIP----EQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVP----- 103
           N  TIP    E++ V    L L  N +D   + TF  L  +  LD++ N++Q +P     
Sbjct: 158 NLETIPWDAVEKM-VSLHTLSLDHNMIDNIPKGTFSHLHKMTRLDVTSNKLQKLPPDPLF 216

Query: 104 --SHIL--DSILELRELKLS--GNPIQ------------------------KITHEAFIN 133
             + +L    I+      LS  GNP+                          +T   F +
Sbjct: 217 QRAQVLATSGIISPSTFALSFGGNPLHCNCELLWLRRLSREDDLETCASPPLLTGRYFWS 276

Query: 134 VPKLNLEDFACSPN-IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE-KIIANISS 191
           +P+   E+F C P  I   T ++   E +  TL C+A G P P I WI  E K+I+N + 
Sbjct: 277 IPE---EEFLCEPPLITRHTHEMRVLEGQRATLRCKARGDPEPAIHWISPEGKLISNATR 333

Query: 192 GLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV---- 247
            L   N              L I+  T+ D+G +TC A N AGE    + L++IK+    
Sbjct: 334 SLVYDN------------GTLDILITTVKDTGAFTCIASNPAGEATQIVDLHIIKLPHLL 381

Query: 248 --ETAVAQPDP 256
                + +PDP
Sbjct: 382 NSTNHIHEPDP 392

Cell adhesion molecule that mediates homophilic cell-cell adhesion in a Ca(2+)-independent manner. Promotes neurite outgrowth in hippocampal neurons.

Homo sapiens (taxid: 9606)

>sp|Q149C3|LIGO4_MOUSE Leucine-rich repeat and immunoglobulin-like domain containing-NOGO receptor-interacting protein 4 OS=Mus musculus GN=Lingo4 PE=2 SV=2

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 33  AECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINL 89
           + CP+ C+C  +     V C  +   TIP  L + T++LDLS N    L R    +L  L
Sbjct: 29  SSCPTVCDCTSQ--TRAVFCAHRRLDTIPGGLPLDTELLDLSGNRLWGLQRGMLSRLGQL 86

Query: 90  VELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDF 142
            ELDLSYNQ+  +       +  L  L+L GN ++ +    F  +  L L D 
Sbjct: 87  QELDLSYNQLSTLEPGAFHGLQSLLTLRLQGNRLRIVGPGIFSGLTALTLLDL 139

Mus musculus (taxid: 10090)

>sp|O15394|NCAM2_HUMAN Neural cell adhesion molecule 2 OS=Homo sapiens GN=NCAM2 PE=1 SV=2

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 11/82 (13%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           + TAE  E +T SCRA+GSP P I W    K+I             +YI+K  N  + LT
Sbjct: 219 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIE---------ENEKYILKGSN--TELT 267

Query: 214 IVAVTMSDSGIYTCRAKNGAGE 235
           +  +  SD G Y CRA N AGE
Sbjct: 268 VRNIINSDGGPYVCRATNKAGE 289

May play important roles in selective fasciculation and zone-to-zone projection of the primary olfactory axons.

Homo sapiens (taxid: 9606)

>sp|Q9CZT5|VASN_MOUSE Vasorin OS=Mus musculus GN=Vasn PE=2 SV=2

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 6/106 (5%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQL---DVGTQVLDLSDNFLDRYTFRKLINLVE 91
           CPS C+C      +TV C A+  TT+P  +    VG  + +     LD   F  L  L  
Sbjct: 25  CPSGCQCNQP---QTVFCTARQGTTVPRDVPPDTVGLYIFENGITTLDVGCFAGLPGLQL 81

Query: 92  LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
           LDLS NQI  +P  I   ++ L  L L+ N + +I++E F  + +L
Sbjct: 82  LDLSQNQITSLPGGIFQPLVNLSNLDLTANKLHEISNETFRGLRRL 127

May act as an inhibitor of TGF-beta signaling.

Mus musculus (taxid: 10090)

>sp|P59035|LRRC3_RAT Leucine-rich repeat-containing protein 3 OS=Rattus norvegicus GN=Lrrc3 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 4/108 (3%)

Query: 28  CLQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRY---TFR 84
           CL++ A CP +C+C    G   V C ++    IP  +   T +L L  N + R     F+
Sbjct: 26  CLRLGASCPQSCQCPDHAGAVAVHCSSRGLQEIPRDIPANTVLLKLDANRISRVPNGAFQ 85

Query: 85  KLINLVELDLSYNQIQFV-PSHILDSILELRELKLSGNPIQKITHEAF 131
            L  L ELDLS+N I+ + P+        LR L LS N I++I  +A 
Sbjct: 86  HLPQLRELDLSHNAIEAIGPAAFSGLAGGLRLLDLSHNRIRRIPKDAL 133

Rattus norvegicus (taxid: 10116)

>sp|P59034|LRRC3_MOUSE Leucine-rich repeat-containing protein 3 OS=Mus musculus GN=Lrrc3 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 4/108 (3%)

Query: 28  CLQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRY---TFR 84
           CL++ A CP  C+C    G   V C ++    IP  +   T +L L  N + R     F+
Sbjct: 26  CLRLGASCPQACQCPDHAGAVAVHCSSRGLQEIPRDIPADTVLLKLDANRISRVPNGAFQ 85

Query: 85  KLINLVELDLSYNQIQFV-PSHILDSILELRELKLSGNPIQKITHEAF 131
            L  L ELDLS+N I+ + P+        LR L LS N I++I  +A 
Sbjct: 86  HLPQLRELDLSHNAIEAIGPAAFSGLAGGLRLLDLSHNRIRRIPKDAL 133

Mus musculus (taxid: 10090)

>sp|A8WGA3|LFN1L_DANRE Leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein OS=Danio rerio GN=lrfn1l PE=2 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 86/217 (39%), Gaps = 58/217 (26%)

Query: 83  FRKLINLVELDLSYNQIQFVPSHIL-----------DSILELRELKLSGNPIQ------- 124
           F  L  L  LD++ N+++ +P   L            S L    L   GNP+        
Sbjct: 192 FSNLHKLARLDMTSNKLKKIPPDPLFLRIPVYAKSKGSPLSSLVLSFGGNPLHCNCELLW 251

Query: 125 -----------------KITHEAFINVPKLNLEDFACSPN-IRPITPDVTAEENENVTLS 166
                             +T + F  +P+   E+F C P  I   +P   A E +  +L 
Sbjct: 252 LRRLTREDDLETCASPPDLTAKYFWTIPE---EEFICDPPVITRKSPKTFAMEGQPTSLK 308

Query: 167 CRATGSPVPKIKWIFKE-KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY 225
           C+A G P P + WI  E ++IAN S  L+  N             +L I   ++ D+GI+
Sbjct: 309 CKANGDPDPDVHWISPEGRLIANTSRTLSFSN------------GSLEINITSLKDTGIF 356

Query: 226 TCRAKNGAGEVFTNISL------NVIKVETAVAQPDP 256
           TC A N AGE    + L      ++      + +PDP
Sbjct: 357 TCIASNAAGESTGTVELVVSPLPHLANSTNRIREPDP 393

May be involved in the regulation of excitatory synapses.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
195052723	1006	GH13763 [Drosophila grimshawi] gi|193900	0.314	0.115	0.486	8e-30
195069562	790	GH23234 [Drosophila grimshawi] gi|193906	0.314	0.146	0.486	3e-29
198472632	1021	GA18017 [Drosophila pseudoobscura pseudo	0.314	0.113	0.486	5e-29
195161462	1021	GL26432 [Drosophila persimilis] gi|19410	0.314	0.113	0.486	5e-29
195436824	1035	GK18139 [Drosophila willistoni] gi|19416	0.319	0.114	0.476	6e-29
91081311	878	PREDICTED: similar to GA18017-PA [Tribol	0.322	0.135	0.483	7e-29
270005207	918	hypothetical protein TcasGA2_TC007226 [T	0.322	0.129	0.483	7e-29
328711541	904	PREDICTED: hypothetical protein LOC10016	0.319	0.130	0.449	8e-29
195117774	1008	GI17905 [Drosophila mojavensis] gi|19391	0.314	0.115	0.479	1e-28
195386956	1008	GJ17410 [Drosophila virilis] gi|19414862	0.314	0.115	0.472	2e-28

>gi|195052723|ref|XP_001993356.1| GH13763 [Drosophila grimshawi] gi|193900415|gb|EDV99281.1| GH13763 [Drosophila grimshawi]

 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 72/148 (48%), Positives = 92/148 (62%), Gaps = 32/148 (21%)

Query: 20  IMVLVCTGCL-QVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN-- 76
           ++ L+C  CL Q+ AECPS CECKWK GKE+VLC   N T IPE LD GTQ+LDLS N  
Sbjct: 56  LLWLLC--CLSQLHAECPSVCECKWKSGKESVLCLNANLTHIPEPLDAGTQLLDLSGNDI 113

Query: 77  ---------------------------FLDRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
                                      F++R+ FRKLINLVELDLS+NQ+  +PS  L  
Sbjct: 114 QTIPDDIFAAAQLLNLQKVYLARCRLRFIERHAFRKLINLVELDLSHNQLAAIPSLALYH 173

Query: 110 ILELRELKLSGNPIQKITHEAFINVPKL 137
           + ELREL+L+GNPI ++  +AF +VP+L
Sbjct: 174 VSELRELRLTGNPITRVPDDAFGHVPQL 201

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195069562|ref|XP_001996981.1| GH23234 [Drosophila grimshawi] gi|193906250|gb|EDW05117.1| GH23234 [Drosophila grimshawi]

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/148 (48%), Positives = 92/148 (62%), Gaps = 32/148 (21%)

Query: 20  IMVLVCTGCL-QVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN-- 76
           ++ L+C  CL Q+ AECPS CECKWK GKE+VLC   N T IPE LD GTQ+LDLS N  
Sbjct: 56  LLWLLC--CLSQLHAECPSVCECKWKSGKESVLCLNANLTHIPEPLDAGTQLLDLSGNDI 113

Query: 77  ---------------------------FLDRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
                                      F++R+ FRKLINLVELDLS+NQ+  +PS  L  
Sbjct: 114 QTIPDDIFAAAQLLNLQKVYLARCRLRFIERHAFRKLINLVELDLSHNQLAAIPSLALYH 173

Query: 110 ILELRELKLSGNPIQKITHEAFINVPKL 137
           + ELREL+L+GNPI ++  +AF +VP+L
Sbjct: 174 VSELRELRLTGNPITRVPDDAFGHVPQL 201

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198472632|ref|XP_001356012.2| GA18017 [Drosophila pseudoobscura pseudoobscura] gi|198139097|gb|EAL33071.2| GA18017 [Drosophila pseudoobscura pseudoobscura]

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/148 (48%), Positives = 91/148 (61%), Gaps = 32/148 (21%)

Query: 20  IMVLVCTGCL-QVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN-- 76
           ++ L+C  CL Q+ AECPS CECKWK GKE+VLC   N T IPE LD GTQ+LDLS N  
Sbjct: 56  LLWLLC--CLSQLRAECPSVCECKWKSGKESVLCLNANLTHIPEPLDAGTQLLDLSGNDI 113

Query: 77  ---------------------------FLDRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
                                       ++R+ FRKLINLVELDLS+NQ+  +PS  L  
Sbjct: 114 QSMPDDSFAAARLLNLQKVYLARCRLRLIERHAFRKLINLVELDLSHNQLGAIPSLALYH 173

Query: 110 ILELRELKLSGNPIQKITHEAFINVPKL 137
           + ELREL+LSGNPI ++  +AF +VP+L
Sbjct: 174 VSELRELRLSGNPILRVPDDAFAHVPQL 201

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195161462|ref|XP_002021587.1| GL26432 [Drosophila persimilis] gi|194103387|gb|EDW25430.1| GL26432 [Drosophila persimilis]

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/148 (48%), Positives = 91/148 (61%), Gaps = 32/148 (21%)

Query: 20  IMVLVCTGCL-QVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN-- 76
           ++ L+C  CL Q+ AECPS CECKWK GKE+VLC   N T IPE LD GTQ+LDLS N  
Sbjct: 56  LLWLLC--CLSQLRAECPSVCECKWKSGKESVLCLNANLTHIPEPLDAGTQLLDLSGNDI 113

Query: 77  ---------------------------FLDRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
                                       ++R+ FRKLINLVELDLS+NQ+  +PS  L  
Sbjct: 114 QSMPDDSFAAARLLNLQKVYLARCRLRLIERHAFRKLINLVELDLSHNQLGAIPSLALYH 173

Query: 110 ILELRELKLSGNPIQKITHEAFINVPKL 137
           + ELREL+LSGNPI ++  +AF +VP+L
Sbjct: 174 VSELRELRLSGNPILRVPDDAFAHVPQL 201

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195436824|ref|XP_002066355.1| GK18139 [Drosophila willistoni] gi|194162440|gb|EDW77341.1| GK18139 [Drosophila willistoni]

 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 89/147 (60%), Gaps = 29/147 (19%)

Query: 20  IMVLVCTGCLQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN--- 76
           ++ L+C    Q+ AECPS CECKWK GKE+VLC   N T IPE LD GTQ+LDLS N   
Sbjct: 59  LLWLLCCLSHQLRAECPSVCECKWKSGKESVLCLNANLTHIPEPLDAGTQLLDLSGNDIQ 118

Query: 77  --------------------------FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSI 110
                                      ++R+ FRKLINLVELDLS+NQ+  +PS  L  +
Sbjct: 119 SIPNDIFAEAELLNLQKVYMAKCHLRLIERHAFRKLINLVELDLSHNQLLAIPSLALYHV 178

Query: 111 LELRELKLSGNPIQKITHEAFINVPKL 137
            ELREL+LSGNPI ++  +AF +VP+L
Sbjct: 179 SELRELRLSGNPILRVPDDAFAHVPQL 205

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91081311|ref|XP_969542.1| PREDICTED: similar to GA18017-PA [Tribolium castaneum]

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 72/149 (48%), Positives = 90/149 (60%), Gaps = 30/149 (20%)

Query: 19  YIMVLVCTGCLQ-VFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN- 76
           + + L+   C Q + A+CP  CECKWK GKE+V C   N ++IP  L+ GTQVLD+S N 
Sbjct: 77  FHLALIIGFCTQMIVADCPRLCECKWKSGKESVSCPNANLSSIPLHLEAGTQVLDVSKNN 136

Query: 77  ----------------------------FLDRYTFRKLINLVELDLSYNQIQFVPSHILD 108
                                        L+RY FRKLINLVELDLS+N +  VPSH  D
Sbjct: 137 LVNLKHDEFSKAGLLNLQKVYLSQCRLKNLERYAFRKLINLVELDLSHNLLSSVPSHSFD 196

Query: 109 SILELRELKLSGNPIQKITHEAFINVPKL 137
           SI ELRELKL+ NPIQ+I ++AFINVP+L
Sbjct: 197 SIPELRELKLNDNPIQRILNDAFINVPQL 225

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005207|gb|EFA01655.1| hypothetical protein TcasGA2_TC007226 [Tribolium castaneum]

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 72/149 (48%), Positives = 90/149 (60%), Gaps = 30/149 (20%)

Query: 19  YIMVLVCTGCLQ-VFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN- 76
           + + L+   C Q + A+CP  CECKWK GKE+V C   N ++IP  L+ GTQVLD+S N 
Sbjct: 117 FHLALIIGFCTQMIVADCPRLCECKWKSGKESVSCPNANLSSIPLHLEAGTQVLDVSKNN 176

Query: 77  ----------------------------FLDRYTFRKLINLVELDLSYNQIQFVPSHILD 108
                                        L+RY FRKLINLVELDLS+N +  VPSH  D
Sbjct: 177 LVNLKHDEFSKAGLLNLQKVYLSQCRLKNLERYAFRKLINLVELDLSHNLLSSVPSHSFD 236

Query: 109 SILELRELKLSGNPIQKITHEAFINVPKL 137
           SI ELRELKL+ NPIQ+I ++AFINVP+L
Sbjct: 237 SIPELRELKLNDNPIQRILNDAFINVPQL 265

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328711541|ref|XP_001947144.2| PREDICTED: hypothetical protein LOC100164134 [Acyrthosiphon pisum]

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 90/149 (60%), Gaps = 31/149 (20%)

Query: 20  IMVLVCTGCL--QVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN- 76
           +++LV + C+     A+CP  CECKW+ GKE+ +C + N T +P  LD GTQ+LDL+DN 
Sbjct: 20  VVLLVLSACVVRGARADCPVACECKWRSGKESAICASANMTAVPRHLDYGTQLLDLNDNP 79

Query: 77  ----------------------------FLDRYTFRKLINLVELDLSYNQIQFVPSHILD 108
                                        LDRY FRKL NLVELDLS+N I  VPS +L+
Sbjct: 80  LYRLGKDAFADADLLNLQKLFLSRCRIKALDRYAFRKLNNLVELDLSHNSIPVVPSAVLE 139

Query: 109 SILELRELKLSGNPIQKITHEAFINVPKL 137
           S+ ELREL+L+GNPI K+ + AF +VP+L
Sbjct: 140 SVPELRELRLNGNPIMKVPNGAFTHVPRL 168

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195117774|ref|XP_002003422.1| GI17905 [Drosophila mojavensis] gi|193913997|gb|EDW12864.1| GI17905 [Drosophila mojavensis]

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/148 (47%), Positives = 91/148 (61%), Gaps = 32/148 (21%)

Query: 20  IMVLVCTGCL-QVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN-- 76
           ++ L+C  CL Q+ AECPS CECKWK GKE+VLC   N T IPE LD GTQ+LDLS N  
Sbjct: 55  LLWLLC--CLSQLRAECPSVCECKWKSGKESVLCLNANLTHIPEPLDAGTQLLDLSGNDI 112

Query: 77  ---------------------------FLDRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
                                       ++R+ FRKLINLVELDLS+NQ+  +PS  L  
Sbjct: 113 QTIPDDSFAAAQLLNLQKVYLARCRLRLIERHAFRKLINLVELDLSHNQLTAIPSLALYH 172

Query: 110 ILELRELKLSGNPIQKITHEAFINVPKL 137
           + ELREL+L+GNPI ++  +AF +VP+L
Sbjct: 173 VSELRELRLTGNPITRVPDDAFGHVPQL 200

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195386956|ref|XP_002052170.1| GJ17410 [Drosophila virilis] gi|194148627|gb|EDW64325.1| GJ17410 [Drosophila virilis]

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/148 (47%), Positives = 91/148 (61%), Gaps = 32/148 (21%)

Query: 20  IMVLVCTGCL-QVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN-- 76
           ++ L+C  CL Q+ AECPS CECKWK GKE+VLC   N T IPE LD GTQ+LDLS N  
Sbjct: 55  LLWLLC--CLSQLRAECPSVCECKWKSGKESVLCLNANLTHIPEPLDAGTQLLDLSGNDI 112

Query: 77  ---------------------------FLDRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
                                       ++R+ FRKLINLVELDLS+NQ+  +PS  L  
Sbjct: 113 QTIPDDSFASAQLLNLQKVYLARCRLRLIERHAFRKLINLVELDLSHNQLSAIPSLALYH 172

Query: 110 ILELRELKLSGNPIQKITHEAFINVPKL 137
           + ELRE++L+GNPI ++  +AF +VP+L
Sbjct: 173 VPELREIRLTGNPISRVPDDAFGHVPQL 200

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
FB|FBgn0028370	1021	kek3 "kekkon-3" [Drosophila me	0.406	0.146	0.323	1.4e-38
FB|FBgn0015399	880	kek1 "kekkon-1" [Drosophila me	0.504	0.211	0.288	2e-26
FB|FBgn0015400	894	kek2 "kekkon-2" [Drosophila me	0.279	0.115	0.394	7.4e-25
MGI|MGI:2144814	719	Lrfn5 "leucine rich repeat and	0.322	0.165	0.322	1.7e-19
RGD|1309357	719	Lrfn5 "leucine rich repeat and	0.322	0.165	0.322	2.8e-19
FB|FBgn0032484	649	kek4 "kekkon4" [Drosophila mel	0.395	0.224	0.289	5.7e-17
FB|FBgn0031016	931	kek5 "kekkon5" [Drosophila mel	0.384	0.152	0.267	6.1e-15
ZFIN|ZDB-GENE-080219-38	687	zgc:172282 "zgc:172282" [Danio	0.341	0.183	0.3	1.8e-14
WB|WBGene00004257	1328	pxn-2 [Caenorhabditis elegans	0.238	0.066	0.389	1.2e-13
MGI|MGI:2442298	606	Lingo2 "leucine rich repeat an	0.336	0.204	0.287	3.5e-13

FB|FBgn0028370 kek3 "kekkon-3" [Drosophila melanogaster (taxid:7227)]

 Score = 248 (92.4 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
 Identities = 54/167 (32%), Positives = 93/167 (55%)

Query:   136 KLNLEDFACSPNIRPITPDVTAE--ENENVTLSCRATGSPVPKIKWIFKEKIIANISSG- 192
             KL+++DFAC P I  +  D TA   E  N+T+SC   G P P +KW+ K ++IAN+S+G 
Sbjct:   308 KLDVDDFACVPQI--VATDTTAHGVEGRNITMSCYVEGVPQPAVKWLLKNRLIANLSAGG 365

Query:   193 -----------LANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNIS 241
                         A   ++ Y++  + + SNLTI+   M D+GIYTC A+N AG+V  +++
Sbjct:   366 DGDSDSEPRTAAATQGRKTYVVNMLRNASNLTILTADMQDAGIYTCAAENKAGKVEASVT 425

Query:   242 LNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIILLKAKRK 288
             L V +          + L+ ++  ++ ++  + F  +C+  L+ +RK
Sbjct:   426 LAVSRRPPEAPWGVRIILLGAVAALL-LVGGSSFAAICLCSLQRRRK 471

GO:0005886 "plasma membrane" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISM

FB|FBgn0015399 kek1 "kekkon-1" [Drosophila melanogaster (taxid:7227)]

 Score = 208 (78.3 bits), Expect = 2.0e-26, Sum P(2) = 2.0e-26
 Identities = 56/194 (28%), Positives = 96/194 (49%)

Query:   119 SGNPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIK 178
             SG P ++I   +F +   L++++FAC P + PI+  V A   EN +++CRA   P   I 
Sbjct:   306 SGGP-ERIIDRSFAD---LHVDEFACRPEMLPISHYVEAAMGENASITCRARAVPAANIN 361

Query:   179 WIFKEKIIANISSGLA--NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
             W +  +++AN S+  A   ++  + +       S L +     +DS  + C A+N AG  
Sbjct:   362 WYWNGRLLANNSAFTAYQRIHMLEQVEGGFEKRSKLVLTNAQETDSSEFYCVAENRAGMA 421

Query:   237 FTNISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIILLKAKRKRYADVNR- 295
               N +L+V      +A      +V     +V +I+ A  V++C+ LL+ KR+ Y D    
Sbjct:   422 EANFTLHVSMRAAGMASLGSGQIVGLSAALVALIVFALGVIMCL-LLRVKRQPYVDSKTP 480

Query:   296 RYLEDKCESNHQQS 309
              ++E     NHQ S
Sbjct:   481 NHMEVITSVNHQNS 494

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0048477 "oogenesis" evidence=IMP

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IGI;IMP;TAS

GO:0005154 "epidermal growth factor receptor binding" evidence=IPI

GO:0007175 "negative regulation of epidermal growth factor-activated receptor activity" evidence=IDA;TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0000910 "cytokinesis" evidence=IMP

GO:0048019 "receptor antagonist activity" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0015400 kek2 "kekkon-2" [Drosophila melanogaster (taxid:7227)]

 Score = 190 (71.9 bits), Expect = 7.4e-25, Sum P(2) = 7.4e-25
 Identities = 43/109 (39%), Positives = 60/109 (55%)

Query:    29 LQVFAECP-STCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL-----DRYT 82
             L + A CP   C CKWKGGK+TV C  +  + +PE +D GTQVL+ S N L     +R+ 
Sbjct:    14 LAITAACPPEVCVCKWKGGKQTVECGGQQLSNLPEGMDPGTQVLNFSGNALQVLQSERFL 73

Query:    83 FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAF 131
                L+NL ++ LS NQ+  +       +  L EL LS N +Q +  E F
Sbjct:    74 RMDLLNLQKIYLSRNQLIRIHEKAFRGLTNLVELDLSENALQNVPSETF 122

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

MGI|MGI:2144814 Lrfn5 "leucine rich repeat and fibronectin type III domain containing 5" [Mus musculus (taxid:10090)]

 Score = 157 (60.3 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
 Identities = 40/124 (32%), Positives = 60/124 (48%)

Query:    19 YIMVLVCTGCLQVFAE-CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF 77
             ++  L   G + V A+ CP  C C+        LC  K    +P  +D  T  L L+DNF
Sbjct:     4 FLFYLFLIG-IAVRAQICPKRCVCQILSPNLATLCAKKGLLFVPPNIDRRTVELRLADNF 62

Query:    78 ---LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINV 134
                + R  F  + +LV+L LS N I F+  H    +  LR L L+ N + KIT++ F  +
Sbjct:    63 VTNIKRKDFANMTSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLTKITNDMFSGL 122

Query:   135 PKLN 138
               L+
Sbjct:   123 SNLH 126

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1309357 Lrfn5 "leucine rich repeat and fibronectin type III domain containing 5" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
 Identities = 40/124 (32%), Positives = 60/124 (48%)

Query:    19 YIMVLVCTGCLQVFAE-CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF 77
             ++  L   G + V A+ CP  C C+        LC  K    +P  +D  T  L L+DNF
Sbjct:     4 FLFYLFLIG-IAVRAQICPKRCVCQILSPNLATLCAKKGLLFVPPNIDRRTVELRLADNF 62

Query:    78 ---LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINV 134
                + R  F  + +LV+L LS N I F+  H    +  LR L L+ N + KIT++ F  +
Sbjct:    63 VTNIKRKDFANMTSLVDLTLSRNTISFITPHAFADLRNLRALHLNSNRLTKITNDMFSGL 122

Query:   135 PKLN 138
               L+
Sbjct:   123 SNLH 126

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0032484 kek4 "kekkon4" [Drosophila melanogaster (taxid:7227)]

 Score = 153 (58.9 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
 Identities = 48/166 (28%), Positives = 80/166 (48%)

Query:   140 EDFACSPNIRPITPDVTAEEN---ENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANM 196
             E FAC P I  + P ++   N   ENVTL CR  GSP   I W +  ++  + S  + ++
Sbjct:   272 EAFACKPKI--VYPTLSTSINTSKENVTLICRVHGSPNTVIAWDYTNQVYESRSKPVKSL 329

Query:   197 NKRQYIIKTINS-------------LSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLN 243
              K++  I+ +               +S LTIV    SD G+YTC A+N  G+   +IS+ 
Sbjct:   330 QKQRIYIELLREDESKIRKFGHDVFVSRLTIVNARKSDEGVYTCLAENPGGKDSVHISVV 389

Query:   244 VIKVETAVAQPDP-VYLVASLTTVVTIILTACF-VVLCIILLKAKR 287
             V K    ++  D   + +  L  +  + ++  F +V C+I  + K+
Sbjct:   390 VQKDMERISLIDSNFFAIVCLIAMGFLSMSILFSLVTCLIFKRFKQ 435

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

FB|FBgn0031016 kek5 "kekkon5" [Drosophila melanogaster (taxid:7227)]

 Score = 145 (56.1 bits), Expect = 6.1e-15, Sum P(3) = 6.1e-15
 Identities = 39/146 (26%), Positives = 66/146 (45%)

Query:   140 EDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKR 199
             E+FAC P I           ++N++L CR  GSP P + W++ ++ +      +  +   
Sbjct:   273 ENFACRPRILGSVRSFIEANHDNISLPCRIVGSPRPNVTWVYNKRPLQQYDPRVRVLTSV 332

Query:   200 QYIIKTINSL--SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI-KVETAVAQPDP 256
             + + +  + +  S L IV V  SD G YTC A N  G       L V      AV+  D 
Sbjct:   333 EQMPEQPSQVLTSELRIVGVRASDKGAYTCVADNRGGRAEAEFQLLVSGDYAGAVSASDG 392

Query:   257 VYLVASLTTVVTIILTACFVVLCIIL 282
             + + A     +    T  F+++C+I+
Sbjct:   393 MGMGAIGAPTIDP-QTNMFLIICLII 417

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0030510 "regulation of BMP signaling pathway" evidence=IDA

ZFIN|ZDB-GENE-080219-38 zgc:172282 "zgc:172282" [Danio rerio (taxid:7955)]

 Score = 140 (54.3 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
 Identities = 45/150 (30%), Positives = 70/150 (46%)

Query:   115 ELKLSGNPIQKITHEAFINVPKLNLEDFACSPN-IRPITPDVTAEENENVTLSCRATGSP 173
             +L+   +P   +T + F  +P+   E+F C P  I   +P   A E +  +L C+A G P
Sbjct:   260 DLETCASP-PDLTAKYFWTIPE---EEFICDPPVITRKSPKTFAMEGQPTSLKCKANGDP 315

Query:   174 VPKIKWIFKE-KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG 232
              P + WI  E ++IAN S  L+  N             +L I   ++ D+GI+TC A N 
Sbjct:   316 DPDVHWISPEGRLIANTSRTLSFSN------------GSLEINITSLKDTGIFTCIASNA 363

Query:   233 AGEVFTNISLNVIKVE------TAVAQPDP 256
             AGE    + L V  +         + +PDP
Sbjct:   364 AGESTGTVELVVSPLPHLANSTNRIREPDP 393

GO:0016020 "membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045202 "synapse" evidence=IEA

WB|WBGene00004257 pxn-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 138 (53.6 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
 Identities = 37/95 (38%), Positives = 51/95 (53%)

Query:    35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVE 91
             CPS C C    G + V C+ KN T IP  + + T  L  S+N L+   +  F+ L NL  
Sbjct:    17 CPSECRC---AGLD-VHCEGKNLTAIPGHIPIATTNLYFSNNLLNSLSKSNFQALPNLQY 72

Query:    92 LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI 126
             LDLS N I+ +   +LDS   L+ L LS N I+ +
Sbjct:    73 LDLSNNSIRDIEETLLDSFPGLKYLDLSWNKIRYV 107

GO:0004601 "peroxidase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010172 "embryonic body morphogenesis" evidence=IMP

GO:0016203 "muscle attachment" evidence=IMP

GO:0005604 "basement membrane" evidence=IDA

GO:0071711 "basement membrane organization" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0048681 "negative regulation of axon regeneration" evidence=IMP

MGI|MGI:2442298 Lingo2 "leucine rich repeat and Ig domain containing 2" [Mus musculus (taxid:10090)]

 Score = 140 (54.3 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
 Identities = 38/132 (28%), Positives = 66/132 (50%)

Query:    16 WRVYIMVLVCTGCLQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSD 75
             W+ ++ + V    +     CP+ CEC  +   ++V C  +    IPE + + T++LDLS 
Sbjct:     9 WQPFLGLAVVLLLMGSTIGCPARCECSAQN--KSVSCHRRRLLAIPEGIPIETKILDLSK 66

Query:    76 NFLDRYTFRKLIN---LVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFI 132
             N L      + I+   L E+DLS N I  V     +++  LR L+L GN ++ +    F 
Sbjct:    67 NRLKSINPEEFISYPLLEEIDLSDNIIANVEPGAFNNLFNLRSLRLKGNRLKLVPLGVFT 126

Query:   133 ---NVPKLNLED 141
                N+ KL++ +
Sbjct:   127 GLSNLTKLDISE 138

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	369
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-17
smart00409	85	smart00409, IG, Immunoglobulin	2e-17
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	9e-17
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	1e-13
cd00096	74	cd00096, Ig, Immunoglobulin domain	2e-13
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	5e-11
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	6e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-10
pfam00047	62	pfam00047, ig, Immunoglobulin domain	8e-09
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	8e-09
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	1e-08
pfam07686	114	pfam07686, V-set, Immunoglobulin V-set domain	2e-08
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	2e-08
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	3e-08
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	1e-07
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	1e-07
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	4e-07
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	8e-07
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	9e-07
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-06
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	8e-06
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	1e-05
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	1e-05
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	1e-05
cd04983	109	cd04983, IgV_TCR_alpha_like, Immunoglobulin (Ig) v	2e-05
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	2e-05
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	3e-05
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	4e-05
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	6e-05
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	7e-05
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	1e-04
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	1e-04
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	1e-04
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	1e-04
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	2e-04
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	2e-04
cd00099	105	cd00099, IgV, Immunoglobulin variable domain (IgV)	2e-04
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	2e-04
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	3e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	4e-04
smart00406	81	smart00406, IGv, Immunoglobulin V-Type	5e-04
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	5e-04
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	5e-04
cd04979	89	cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like	8e-04
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	0.001
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	0.001
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	0.001
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	0.002
cd05858	90	cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-lik	0.002
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	0.002
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	0.002
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	0.003
cd05717	95	cd05717, Ig1_Necl-1-3_like, First (N-terminal) imm	0.003
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	0.004

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 76.0 bits (187), Expect = 2e-17
 Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
           P VT +E E+VTLSC A+GSP P++ W  +   +   S          + +    S S L
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGR--------FSVSRSGSTSTL 53

Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           TI  VT  DSG YTC A N +G   +  +L V
Sbjct: 54  TISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 76.0 bits (187), Expect = 2e-17
 Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
           P VT +E E+VTLSC A+GSP P++ W  +   +   S          + +    S S L
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGR--------FSVSRSGSTSTL 53

Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           TI  VT  DSG YTC A N +G   +  +L V
Sbjct: 54  TISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 74.2 bits (183), Expect = 9e-17
 Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           DV  +E E+   +C  TG P P + W    + +          + R + +        LT
Sbjct: 9   DVEVQEGESARFTCTVTGDPDPTVSWFKDGQPL--------RSSDR-FKVTYEGGTYTLT 59

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           I  V   D G YTC A N AGE   +  L V
Sbjct: 60  ISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 64.4 bits (157), Expect = 1e-13
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 13/76 (17%)

Query: 159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT 218
           E ++VTL+C A G+PVP I W+   K +   +  +A+                LTI +V+
Sbjct: 1   EGQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVAS-GST------------LTIKSVS 47

Query: 219 MSDSGIYTCRAKNGAG 234
           + DSG+YTC A+N AG
Sbjct: 48  LEDSGLYTCVAENSAG 63

Length = 63

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 64.4 bits (156), Expect = 2e-13
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 5/79 (6%)

Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
           VTL+C A+G P P I W+   K + +     + + + +    T +  S LTI  VT+ DS
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPS-----SVLTRVRSSRGTSSGSSTLTISNVTLEDS 55

Query: 223 GIYTCRAKNGAGEVFTNIS 241
           G YTC A N AG V  +++
Sbjct: 56  GTYTCVASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 58.7 bits (142), Expect = 5e-11
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 4/81 (4%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           + TA E E +TL+C A G P+P+I W    +   N S G  +++ R  +++    +S+LT
Sbjct: 10  NQTAVELEQITLTCEAEGDPIPEITWRRATR---NFSEGDKSLDGR-IVVRGHARVSSLT 65

Query: 214 IVAVTMSDSGIYTCRAKNGAG 234
           +  V ++D+G Y C A N  G
Sbjct: 66  LKDVQLTDAGRYDCEASNRIG 86

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 54.8 bits (132), Expect = 6e-10
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 13/83 (15%)

Query: 163 VTLSCRATGSPVPKIKWIFKE-KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD 221
            TL C+A G P P I WI  + K+I+N S  L   N              L I+  T+ D
Sbjct: 4   ATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDN------------GTLDILITTVKD 51

Query: 222 SGIYTCRAKNGAGEVFTNISLNV 244
           +G +TC A N AGE    + L++
Sbjct: 52  TGSFTCIASNAAGEATATVELHI 74

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 54.1 bits (131), Expect = 7e-10
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 69  QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
           + LDLS+N L       F+ L NL  LDLS N +  +       +  LR L LSGN +
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 51.0 bits (122), Expect = 8e-09
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM 219
             +VTL+C  +G P   + W  + K +   +             +   S   LTI  VT 
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEEST--------TVGTDENRVSSITLTISNVTP 52

Query: 220 SDSGIYTCRA 229
            DSG YTC  
Sbjct: 53  EDSGTYTCVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 51.7 bits (124), Expect = 8e-09
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 22/100 (22%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P + P        E E+VTL+C A G+P P   W      +++        ++  +    
Sbjct: 2   PVLTP--SPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSS--------SQNGFFTPN 51

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNG-AGEVFTNISLNV 244
                      V+  DSG YTC A NG  G+    ++L V
Sbjct: 52  -----------VSAEDSGTYTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 51.1 bits (122), Expect = 1e-08
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 165 LSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI 224
           L C ATG P P+I W   +K       G      R+  +  +       IV V + D+G+
Sbjct: 3   LECAATGHPTPQIAW---QK-----DGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGV 54

Query: 225 YTCRAKNGAGEVFTNISLNVI 245
           Y+C A+N AG +  N +L V+
Sbjct: 55  YSCTAQNTAGSISANATLTVL 75

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|219514 pfam07686, V-set, Immunoglobulin V-set domain

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 26/107 (24%), Positives = 38/107 (35%), Gaps = 14/107 (13%)

Query: 152 TPDVTAEENENVTLSCRATGS-PVPKIKWIF-----KEKIIANISSGLANM-------NK 198
              VT  E  +VTL C  + S     + W         ++I +  +   N         +
Sbjct: 8   PRPVTVAEGGSVTLPCSFSSSSGSTSVYWYKQPLGKGPELIIHYVTSTPNGKVGPRFKGR 67

Query: 199 RQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNV 244
                    +  +LTI  + +SDSG YTC   N    VF     L V
Sbjct: 68  VTLSGNGSKNDFSLTISNLRLSDSGTYTCAVSNPNELVFGAGTRLTV 114

This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Length = 114

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 10/97 (10%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
            R    + TA   ++VTL+C A G P P + W    + I +         + +Y      
Sbjct: 6   ARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIES--------GEEKYSFN--E 55

Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
             S +TI+ V   D   YTC A+N AGE    I L V
Sbjct: 56  DGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 50.7 bits (121), Expect = 3e-08
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 4/99 (4%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P I  +      E  E +TL+C A+G P+P I W    + I++    L        ++++
Sbjct: 3   PKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDG----HIVVRS 58

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
              +S+LT+  +  +D+G Y C A N  G+   ++ L V
Sbjct: 59  HARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV 97

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 161 ENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMS 220
           E   L C A G P P I W      I  +            +I     LSN+       +
Sbjct: 2   ETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLI-----LSNVQP-----N 51

Query: 221 DSGIYTCRAKNGAGEVFTNISLNVI 245
           D+ +Y C A N  G +  N  ++V+
Sbjct: 52  DTAVYQCNASNVHGYLLANAFVHVV 76

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
                E    T+ C A GSP+PK++WI    I+    +         Y         NL 
Sbjct: 9   ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIY---------NLQ 59

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           +  +T       TC A+N  G+   ++ + V
Sbjct: 60  LSNITSETQTTVTCTAENPVGQANVSVQVTV 90

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 47.7 bits (113), Expect = 4e-07
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           + T  EN   TLSC+A G P+P+I W          S G  + + R   +K  +  S+L 
Sbjct: 10  NETTVENGAATLSCKAEGEPIPEITWKRASDGHT-FSEGDKSPDGR-IEVKGQHGESSLH 67

Query: 214 IVAVTMSDSGIYTCRAKNGAG 234
           I  V +SDSG Y C A +  G
Sbjct: 68  IKDVKLSDSGRYDCEAASRIG 88

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 45.5 bits (108), Expect = 8e-07
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 13/82 (15%)

Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
           V   C   G PVP + W  ++            + K +  I    SL    I  VT  D 
Sbjct: 1   VEFQCEVGGDPVPTVLWRKED----------GELPKGRAEILDDKSLK---IRNVTAGDE 47

Query: 223 GIYTCRAKNGAGEVFTNISLNV 244
           G YTC A+N  G++  + SL V
Sbjct: 48  GSYTCEAENMVGKIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 46.0 bits (109), Expect = 9e-07
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 12/88 (13%)

Query: 161 ENVTLSCRATGSPVPKIKWIF----KEKIIANISSGLANMNKRQYIIKTINSLSNLTIVA 216
           E  +  C  TG P P+I W      KE +I   +    N+         + ++  L I  
Sbjct: 2   ETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNV--------VVTNIGQLVIYN 53

Query: 217 VTMSDSGIYTCRAKNGAGEVFTNISLNV 244
               D+G+YTC A+N  G +  N  L+V
Sbjct: 54  AQPQDAGLYTCTARNSGGLLRANFPLSV 81

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 26/79 (32%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 161 ENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMS 220
           E V  +C ATG P P I W      + +           +  I +      LTI  V  S
Sbjct: 2   ETVEFTCVATGVPTPIINWRLNWGHVPD---------SARVSITSEGGYGTLTIRDVKES 52

Query: 221 DSGIYTCRAKNGAGEVFTN 239
           D G YTC A N  G VF  
Sbjct: 53  DQGAYTCEAINTRGMVFGI 71

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 88  NLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
           NL  LDLS N++  +P      +  L+ L LSGN +  I+ EAF  +P L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSL 50

Length = 60

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 43.2 bits (102), Expect = 8e-06
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 13/81 (16%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           D  A + +NVTL C A G+PVP+IKW    K+  ++ S           I    ++  L 
Sbjct: 10  DTYALKGQNVTLECFALGNPVPQIKW---RKVDGSMPS--------SAEISMSGAV--LK 56

Query: 214 IVAVTMSDSGIYTCRAKNGAG 234
           I  +   D G Y C A+N  G
Sbjct: 57  IPNIQFEDEGTYECEAENIKG 77

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 13/91 (14%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           D  A+   ++   C+A+G+P P  +W+   + +A+          R  +        +L 
Sbjct: 8   DTEADIGSSLRWECKASGNPRPAYRWLKNGQPLAS--------ENRIEV-----EAGDLR 54

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           I  +++SDSG+Y C A+N  G ++ +  L V
Sbjct: 55  ITKLSLSDSGMYQCVAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 9/88 (10%)

Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTI 214
           +T  E E+   SC   G P P + W+ + +II          + +++ I +    S   I
Sbjct: 13  LTVSEGESARFSCDVDGEPAPTVTWMREGQIIV---------SSQRHQITSTEYKSTFEI 63

Query: 215 VAVTMSDSGIYTCRAKNGAGEVFTNISL 242
             V MSD G YT   +N  G+     +L
Sbjct: 64  SKVQMSDEGNYTVVVENSEGKQEAQFTL 91

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 13/89 (14%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
            +I     D  A + +NVTL C A G+PVP I+W    KI+  + +  A ++    ++K 
Sbjct: 2   ADINVKFKDTYALKGQNVTLECFALGNPVPVIRW---RKILEPMPAT-AEISMSGAVLKI 57

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAG 234
            N         +   D G Y C A+N  G
Sbjct: 58  FN---------IQPEDEGTYECEAENIKG 77

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143184 cd04983, IgV_TCR_alpha_like, Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 9/84 (10%)

Query: 152 TPDVTAEENENVTLSCRATGSPVPKIKWIFK-------EKIIANISSGLANMNKR-QYII 203
              ++ +E ENVTL+C  + S    + W ++       + +I   S+G      R    +
Sbjct: 5   PQSLSVQEGENVTLNCNYSTSTFYYLFW-YRQYPGQGPQFLIYISSNGEEKEKGRFSATL 63

Query: 204 KTINSLSNLTIVAVTMSDSGIYTC 227
                 S+L I A  +SDS +Y C
Sbjct: 64  DKSRKSSSLHISAAQLSDSAVYFC 87

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. Length = 109

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 12/79 (15%)

Query: 160 NENVTLSCRATGSPVPKIKWI--FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV 217
              V L C A+G+P P I W+   K     +   G     K+  +I     L +     V
Sbjct: 9   GSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLI-----LES-----V 58

Query: 218 TMSDSGIYTCRAKNGAGEV 236
             SDSG YTC  +N  G +
Sbjct: 59  VPSDSGKYTCIVENKYGSI 77

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 41.6 bits (97), Expect = 3e-05
 Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 14/82 (17%)

Query: 151 ITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSL 209
           ++P  +      VTL+C A G P P  I W ++   I+  S GL             +S 
Sbjct: 6   VSPSPSVTSGGGVTLTCSAEGGPPPPTISW-YRNGSISGGSGGL------------GSSG 52

Query: 210 SNLTIVAVTMSDSGIYTCRAKN 231
           S LT+ +VT  DSG YTC A N
Sbjct: 53  STLTLSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 41.5 bits (97), Expect = 4e-05
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 162 NVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD 221
            VT  C ATG+P P I W  +       S      + R  + +T     +LTI  V  SD
Sbjct: 3   TVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT----GDLTITNVQRSD 58

Query: 222 SGIYTCRAKNGAGEVFTNISLNVIKVET 249
            G Y C+  N AG + T   L V  V  
Sbjct: 59  VGYYICQTLNVAGSILTKAYLEVTDVIA 86

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 40.8 bits (95), Expect = 6e-05
 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 10/71 (14%)

Query: 164 TLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG 223
           T+ C A+G+P P+I W FK+ +  + +S     N R   IK + S   L I     SD G
Sbjct: 2   TMLCAASGNPDPEITW-FKDFLPVDTTS-----NGR---IKQLRS-GALQIENSEESDQG 51

Query: 224 IYTCRAKNGAG 234
            Y C A N AG
Sbjct: 52  KYECVATNSAG 62

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 41.0 bits (96), Expect = 7e-05
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 11/94 (11%)

Query: 153 PDV-TAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT-INSLS 210
           PDV T  E + + L+C   G P P++ W+  ++ +A             Y +K      +
Sbjct: 8   PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSD---------HYNVKVEQGKYA 58

Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           +LTI  V+  DSG Y    KN  G    +++++V
Sbjct: 59  SLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV 92

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 32/103 (31%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P I     D+   + +  TL+C+A G P P I+W  K               +   I+  
Sbjct: 2   PRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQW-LKNGQPLETDKDDP---RSHRIVLP 57

Query: 206 INSLSNLTIVA--VTMSDSGIYTCRAKNGAGE-VFTNISLNVI 245
             SL  L +V      SD G+Y C A N  GE V  N SL V 
Sbjct: 58  SGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEVA 100

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 12/75 (16%)

Query: 162 NVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD 221
           ++   C  TG P P +KW+    ++  I S    + K            NL ++ +  SD
Sbjct: 1   DIVFECEVTGKPTPTVKWVKNGDMV--IPSDYFKIVKEH----------NLQVLGLVKSD 48

Query: 222 SGIYTCRAKNGAGEV 236
            G Y C A+N  G V
Sbjct: 49  EGFYQCIAENDVGNV 63

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 153 PDV-TAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN 211
           PDV T  E + + L+C   G+P P++ W   ++ I         + + +Y         +
Sbjct: 8   PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYA--------S 59

Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           LTI  VT  DSG Y+   KN  G    +++++V
Sbjct: 60  LTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV 92

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 9/71 (12%)

Query: 164 TLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG 223
           +L C A G P+P++ W+          +G+    K    +  I + S L I  V   D+G
Sbjct: 2   SLRCHAEGIPLPRLTWL---------KNGMDITPKLSKQLTLIANGSELHISNVRYEDTG 52

Query: 224 IYTCRAKNGAG 234
            YTC AKN AG
Sbjct: 53  AYTCIAKNEAG 63

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 12/82 (14%)

Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
           V + C+   +P P I W    +++ N        + R  I        +L I+ VT SD 
Sbjct: 4   VIIECKPKAAPKPTISWSKGTELLTN--------SSRICIWPD----GSLEILNVTKSDE 51

Query: 223 GIYTCRAKNGAGEVFTNISLNV 244
           G YTC A+N  G+  +  SL+V
Sbjct: 52  GKYTCFAENFFGKANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 14/75 (18%)

Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGL-ANMNKRQYIIKTINSLSNLTIVAVTMSD 221
           + L C A G P P++ W         I   L  N  K+    KT      L +  V  SD
Sbjct: 1   LVLECIAEGLPTPEVHWD-------RIDGPLSPNRTKKLNNNKT------LQLDNVLESD 47

Query: 222 SGIYTCRAKNGAGEV 236
            G Y C A+N  G  
Sbjct: 48  DGEYVCTAENSEGSA 62

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143167 cd00099, IgV, Immunoglobulin variable domain (IgV)

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 17/87 (19%)

Query: 155 VTAEENENVTLSCRATGS------------PVPKIKWIFKEKIIANISSGLANMNKRQYI 202
           ++  E E+VTLSC  +GS            P    + +     I++  S  A   K ++ 
Sbjct: 1   LSVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLI---YISSNGSQYAGGVKGRFS 57

Query: 203 IKTINSLS--NLTIVAVTMSDSGIYTC 227
               +S S   LTI ++   DS +Y C
Sbjct: 58  GTRDSSKSSFTLTISSLQPEDSAVYYC 84

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 105

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 12/82 (14%)

Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
           + L C A G P P+I WI             A+  K +   KT      L I  V+  D 
Sbjct: 1   LLLECIAEGLPTPEISWIKIG------GELPADRTKFENFNKT------LKIDNVSEEDD 48

Query: 223 GIYTCRAKNGAGEVFTNISLNV 244
           G Y C A N  G     IS+ V
Sbjct: 49  GEYRCTASNSLGSARHTISVTV 70

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
           VTL+C A G P P I W   +       +    +  R  ++    S  +L I  V   DS
Sbjct: 1   VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL----SNGSLLIKHVLEEDS 56

Query: 223 GIYTCRAKNGAG 234
           G Y C+  N  G
Sbjct: 57  GYYLCKVSNDVG 68

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 88  NLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
           NL  LDLS NQI  +P   L ++  L  L LSGN I  ++ 
Sbjct: 2   NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|214650 smart00406, IGv, Immunoglobulin V-Type

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 13/79 (16%)

Query: 162 NVTLSCRATGSPVPK--IKWIFKE-----KIIANISSGLANMNKRQY----IIKTINSLS 210
           +VTLSC+ +GS      + W+ +      + +  I S  ++  +  Y     I    S +
Sbjct: 1   SVTLSCKFSGSTFSSYYVSWVRQPPGKGLEWLGYIGSNGSSYYQESYKGRFTISKDTSKN 60

Query: 211 --NLTIVAVTMSDSGIYTC 227
             +LTI  + + D+G Y C
Sbjct: 61  DVSLTISNLRVEDTGTYYC 79

Length = 81

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 25/83 (30%), Positives = 30/83 (36%), Gaps = 12/83 (14%)

Query: 154 DVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
           D      E   L C    G P P + W  K+    N+       N+R  I+       NL
Sbjct: 5   DTQVAVGEMAVLECSPPRGHPEPTVSWR-KDGQPLNLD------NERVRIVDD----GNL 53

Query: 213 TIVAVTMSDSGIYTCRAKNGAGE 235
            I     SD G Y C A N  GE
Sbjct: 54  LIAEARKSDEGTYKCVATNMVGE 76

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 11/77 (14%)

Query: 160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM 219
             +V L C A+G+P P I W+   K +    + +    K+++ +    SL NL       
Sbjct: 9   GSSVRLKCVASGNPRPDITWLKDNKPL--TPTEIGESRKKKWTL----SLKNLK-----P 57

Query: 220 SDSGIYTCRAKNGAGEV 236
            DSG YTC   N AGE+
Sbjct: 58  EDSGKYTCHVSNRAGEI 74

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143180 cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like domain of semaphorin

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 11/92 (11%)

Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTI 214
           VT  E  +V L C    S +  + W+F                  + ++ T      L I
Sbjct: 6   VTVVEGNSVFLECSPK-SNLASVVWLF------QGGPLQRKEEPEERLLVT---EDGLLI 55

Query: 215 VAVTMSDSGIYTCRA-KNGAGEVFTNISLNVI 245
            +V+ +D+G+YTC++ ++G  +     SLNV+
Sbjct: 56  RSVSPADAGVYTCQSVEHGFKQTLATYSLNVL 87

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. Length = 89

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
           VTL C   G P P  +W      +++     +  +K +           LT+ +    DS
Sbjct: 1   VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKER----------TLTLRSAGPDDS 50

Query: 223 GIYTCRAKNGAGEVFT--NISLNVI 245
           G+Y C A N  G V +  N +L++I
Sbjct: 51  GLYYCCAHNAFGSVCSSQNFTLSII 75

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 9/66 (13%)

Query: 170 TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA 229
           +G P P + W  K+     +S         +  I+T  S ++L I     SDSG YT   
Sbjct: 9   SGRPTPTVTW-SKDGKPLKLSG--------RVQIETTASSTSLVIKNAERSDSGKYTLTL 59

Query: 230 KNGAGE 235
           KN AGE
Sbjct: 60  KNPAGE 65

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 36.8 bits (85), Expect = 0.001
 Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 12/86 (13%)

Query: 159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT 218
           E + V   C A G P P I W               ++++R  ++    S   L I  V 
Sbjct: 1   EGQTVDFLCEAQGYPQPVIAW--------TKGGSQLSVDRRHLVL----SSGTLRISRVA 48

Query: 219 MSDSGIYTCRAKNGAGEVFTNISLNV 244
           + D G Y C+A N  G   T   L V
Sbjct: 49  LHDQGQYECQAVNIVGSQRTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
           V L CR +  P P+I W  K   +   ++   ++ +             L I      D+
Sbjct: 1   VRLECRVSAIPPPQIFWK-KNNEMLTYNTDRISLYQDNC------GRICLLIQNANKEDA 53

Query: 223 GIYTCRAKNGAGEVFTNISLNV 244
           G YT  A N AG V  N  L+V
Sbjct: 54  GWYTVSAVNEAGVVSCNARLDV 75

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143266 cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 162 NVTLSCRATGSPVPKIKWIFKEKIIANI--SSGLANMN--KRQYIIKTINSLSNLTIVAV 217
            V   C+      P I+W+   +   +     GL  +   K   +  T   +  L +  V
Sbjct: 3   TVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNV 62

Query: 218 TMSDSGIYTCRAKNGAGEVFTNISLNVI 245
           T  D+G YTC A N  G    +  L V+
Sbjct: 63  TFEDAGEYTCLAGNSIGISHHSAWLTVL 90

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. Length = 90

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 9/83 (10%)

Query: 163 VTLSCRATGSPVPKIKWIFK-EKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD 221
           V L CR +G P P+I W  + E +  N      + +   YI         L I   T  D
Sbjct: 1   VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYIC--------LLIQGATKED 52

Query: 222 SGIYTCRAKNGAGEVFTNISLNV 244
           +G YT  AKN AG V     L+V
Sbjct: 53  AGWYTVSAKNEAGIVSCTARLDV 75

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 10/78 (12%)

Query: 159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT 218
           +   V+L+CRA GSP P  +W+     I +      ++     +I      SN       
Sbjct: 18  DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVI------SN----PSK 67

Query: 219 MSDSGIYTCRAKNGAGEV 236
             D+G Y C A N  G V
Sbjct: 68  AKDAGRYQCLASNIVGTV 85

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS 222
           V   C A G+P P ++W+   K              R    K  N   +L + +V  SD 
Sbjct: 12  VKFRCPAAGNPTPTMRWLKNGKEFKQ--------EHRIGGYKVRNQHWSLIMESVVPSDK 63

Query: 223 GIYTCRAKNGAGEVFTNISLNV 244
           G YTC  +N  G +     L+V
Sbjct: 64  GNYTCVVENEYGSINHTYHLDV 85

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143194 cd05717, Ig1_Necl-1-3_like, First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 150 PITPDVTAEENENVTLSCRATGSPVPKIKWI--FKEKIIANISSGLANMNKRQYIIKTIN 207
           P+T DVT  E    TL CR   +    ++W    ++ +  N    L + N+ Q +  + N
Sbjct: 2   PVTQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRD-NRIQLVNFSAN 60

Query: 208 SLSNLTIVAVTMSDSGIYTC 227
            LS ++I  V++SD G YTC
Sbjct: 61  ELS-ISISNVSLSDEGRYTC 79

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the formation of synapses, axon bundles, and myelinated axons. Necl-2 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. This group also contains Class-I MHC-restricted T-cell-associated molecule (CRTAM), whose expression pattern is consistent with its expression in Class-I MHC-restricted T-cells. Length = 95

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 35.6 bits (82), Expect = 0.004
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 161 ENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMS 220
           E   L C+  G P P I W      I        + + R+++      L+++       S
Sbjct: 2   ETARLDCQVEGIPTPNITWSINGAPIEG-----TDPDPRRHVSSGALILTDVQP-----S 51

Query: 221 DSGIYTCRAKNGAGEVFTNISLNVI 245
           D+ +Y C A+N  G +  N  ++V+
Sbjct: 52  DTAVYQCEARNRHGNLLANAHVHVV 76

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	369
KOG4194|consensus	873		99.94
KOG4237|consensus	498		99.77
KOG4194|consensus	873		99.7
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.68
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.6
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.59
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.59
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.57
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.55
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.54
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.54
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.54
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.52
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.52
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.51
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.51
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.51
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.5
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.5
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.49
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.49
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.48
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.48
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.48
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.48
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.47
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.47
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.47
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.47
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.47
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.45
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.45
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.44
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.43
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.43
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.42
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.42
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.41
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.41
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.41
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.4
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.39
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.39
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.39
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.38
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.38
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.37
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.37
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.37
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.36
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.36
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.36
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.36
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.36
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.36
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.35
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.35
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.35
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.35
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.34
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.34
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.34
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.33
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.33
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.33
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.33
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.32
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.32
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.32
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.31
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.31
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.3
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.29
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.27
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.27
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.24
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.24
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.24
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.23
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.22
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.21
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.2
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.2
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.19
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.18
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.18
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.18
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.16
KOG3513|consensus	1051		99.15
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.15
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.1
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.07
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.06
KOG4237|consensus	498		99.03
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.02
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.0
KOG3513|consensus	1051		98.99
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.98
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.98
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.97
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.93
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.9
smart00409	86	IG Immunoglobulin.	98.9
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.9
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.89
KOG4221|consensus	1381		98.88
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.87
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.81
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.78
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.76
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.73
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.73
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.72
PHA02826	227	IL-1 receptor-like protein; Provisional	98.7
PHA02826	227	IL-1 receptor-like protein; Provisional	98.7
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.7
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.67
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.66
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.66
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.66
PHA02785	326	IL-beta-binding protein; Provisional	98.64
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.61
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.59
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.59
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.58
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.57
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.56
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.56
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.55
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.54
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.54
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.54
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.52
KOG0617|consensus	264		98.52
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.52
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.52
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.51
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.51
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.49
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.47
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.47
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.47
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.46
PHA02785	326	IL-beta-binding protein; Provisional	98.41
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.4
KOG0444|consensus	1255		98.39
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.39
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.39
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.38
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.38
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.35
KOG4222|consensus	1281		98.34
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.33
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.32
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.31
KOG4221|consensus	1381		98.31
PLN03150	623	hypothetical protein; Provisional	98.3
PLN03150	623	hypothetical protein; Provisional	98.29
KOG0618|consensus	1081		98.29
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.27
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.27
KOG0444|consensus	1255		98.26
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.24
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.22
KOG4222|consensus	1281		98.21
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.2
KOG4579|consensus	177		98.19
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.19
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.19
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.18
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.15
PF01462	28	LRRNT: Leucine rich repeat N-terminal domain; Inte	98.14
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.13
smart00013	33	LRRNT Leucine rich repeat N-terminal domain.	98.12
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.04
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.02
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.02
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	97.96
KOG0618|consensus	1081		97.96
KOG0617|consensus	264		97.94
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.94
KOG0472|consensus	565		97.9
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.87
PHA03376	221	BARF1; Provisional	97.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.79
KOG0472|consensus	565		97.79
smart00406	81	IGv Immunoglobulin V-Type.	97.77
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.74
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.74
KOG1259|consensus	490		97.7
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.61
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.59
KOG1644|consensus	233		97.53
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.51
KOG1859|consensus	1096		97.5
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	97.5
KOG1259|consensus	490		97.47
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.45
KOG0532|consensus	722		97.43
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.34
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	97.31
smart00370	26	LRR Leucine-rich repeats, outliers.	97.31
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.21
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.18
KOG0532|consensus	722		97.17
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.1
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.03
PHA02633	63	hypothetical protein; Provisional	97.01
KOG0531|consensus	414		97.0
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	96.98
smart00407	75	IGc1 Immunoglobulin C-Type.	96.96
KOG4579|consensus	177		96.89
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.82
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	96.82
KOG1644|consensus	233		96.74
KOG1859|consensus	1096		96.71
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.68
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	96.67
KOG2123|consensus	388		96.66
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.58
KOG0531|consensus	414		96.58
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	96.57
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	96.54
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.5
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	96.46
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.37
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	96.3
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	96.25
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.19
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.17
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.13
PLN03210	1153	Resistant to P. syringae 6; Provisional	96.09
smart00370	26	LRR Leucine-rich repeats, outliers.	96.03
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	96.03
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	96.0
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	95.85
cd05770	93	IgC_beta2m Class I major histocompatibility comple	95.82
KOG4597|consensus	560		95.78
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	95.7
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	95.61
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	95.51
KOG3207|consensus	505		95.45
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	95.34
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	95.34
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	95.26
PHA03042	286	CD47-like protein; Provisional	95.22
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.17
PHA02982	251	hypothetical protein; Provisional	95.06
KOG4658|consensus	889		95.04
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	95.01
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	94.8
PRK15386	426	type III secretion protein GogB; Provisional	94.76
KOG4658|consensus	889		94.75
KOG2739|consensus	260		94.15
KOG3207|consensus	505		94.04
PRK15386	426	type III secretion protein GogB; Provisional	93.93
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	93.86
KOG1480|consensus	909		93.03
KOG0473|consensus	326		93.01
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	92.92
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	92.49
KOG2982|consensus	418		92.27
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	92.21
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	92.21
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	92.06
PHA03286	492	envelope glycoprotein E; Provisional	91.68
PTZ00370	296	STEVOR; Provisional	91.63
TIGR01478	295	STEVOR variant surface antigen, stevor family. Thi	91.62
KOG1909|consensus	382		91.53
KOG2739|consensus	260		91.36
KOG3515|consensus	741		91.21
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.59
KOG2123|consensus	388		90.58
PHA03283	542	envelope glycoprotein E; Provisional	90.46
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	90.21
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	90.01
KOG1026|consensus	774		89.94
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	89.11
PF15102	146	TMEM154: TMEM154 protein family	88.83
PF15050	133	SCIMP: SCIMP protein	88.0
KOG3515|consensus	741		87.98
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	87.42
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	87.38
PHA03052	69	Hypothetical protein; Provisional	86.77
PHA03189	348	UL14 tegument protein; Provisional	86.2
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	86.14
PHA03240	258	envelope glycoprotein M; Provisional	85.49
KOG3763|consensus	585		85.48
PHA03273	486	envelope glycoprotein C; Provisional	84.92
KOG1909|consensus	382		84.92
KOG0473|consensus	326		84.85
PHA03269	566	envelope glycoprotein C; Provisional	84.03
PF10873	155	DUF2668: Protein of unknown function (DUF2668); In	83.79
PF05454	290	DAG1: Dystroglycan (Dystrophin-associated glycopro	83.16
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	82.93
PHA03281	642	envelope glycoprotein E; Provisional	81.86
PHA03271	490	envelope glycoprotein C; Provisional	81.0
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	80.68
PF15096	224	G6B: G6B family	80.57

>KOG4194|consensus

Probab=99.94  E-value=4.2e-26  Score=207.24  Aligned_cols=112  Identities=27%  Similarity=0.436  Sum_probs=87.5

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .|.+...|.+++...|+.++|.|.++|.|.|.|.|.+.|+.--..      ...+|  ++.......+.|.+|+.+|+|.
T Consensus       612 ~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPA------A~eRR--l~Vmpedd~f~Itnvk~eD~Gi  683 (873)
T KOG4194|consen  612 APSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPA------ARERR--LHVMPEDDVFFITNVKIEDQGI  683 (873)
T ss_pred             cCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCch------hhhhe--eeecCCCCEEEEecccccccce
Confidence            477888899999999999999999999999999999988652111      11122  2334456689999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeecCCcccCCCCceEeehhh
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLT  264 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~  264 (369)
                      |+|+|.|.+|..++++++.|...|.+...-.+..+..+-.
T Consensus       684 YtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get  723 (873)
T KOG4194|consen  684 YTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGET  723 (873)
T ss_pred             eEEeeeccccceeeceEEEEecCCcccccccceEEEecce
Confidence            9999999999999999999999876554444444444433

>KOG4237|consensus

Probab=99.77  E-value=1.1e-19  Score=158.72  Aligned_cols=107  Identities=30%  Similarity=0.494  Sum_probs=98.4

Q ss_pred             cCcCCCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeeccee---ChhhccCCcccCeeeccCCcccccCCcc
Q psy12695         30 QVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHI  106 (369)
Q Consensus        30 ~~~~~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i---~~~~f~~l~~L~~L~Ls~N~l~~i~~~~  106 (369)
                      ..+..||..|.|+... +..|+|++.||++||.++|.+++.|+|..|+|   .+++|..+++|++||||+|+|+.|.+++
T Consensus        32 ~~~~~CP~pC~Cs~~~-g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A  110 (498)
T KOG4237|consen   32 HSASACPAPCTCSDVE-GGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDA  110 (498)
T ss_pred             hccccCCCCcccCCCC-CceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHh
Confidence            4577999999999654 67999999999999999999999999999995   5899999999999999999999999999


Q ss_pred             cccccccccccccc-cceecccCCcccccCcC
Q psy12695        107 LDSILELRELKLSG-NPIQKITHEAFINVPKL  137 (369)
Q Consensus       107 f~~l~~L~~L~L~~-N~l~~~~~~~f~~l~~l  137 (369)
                      |.+|.+|.+|-|.+ |+|+.++.++|.+|..+
T Consensus       111 F~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl  142 (498)
T KOG4237|consen  111 FKGLASLLSLVLYGNNKITDLPKGAFGGLSSL  142 (498)
T ss_pred             hhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence            99999998887765 99999999999998774

>KOG4194|consensus

Probab=99.70  E-value=4.3e-17  Score=149.07  Aligned_cols=93  Identities=26%  Similarity=0.397  Sum_probs=73.3

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCC-CeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPV-PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~-p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |.+..+-.+..+..|+++.|.|.+.|.|. |.+.|+|+++.+.-.....           ...++.-|.+.+...+|+|.
T Consensus       707 p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~-----------f~d~dQllvv~~~~~~daG~  775 (873)
T KOG4194|consen  707 PSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHT-----------FPDGDQLLVVKENLVEDAGI  775 (873)
T ss_pred             CcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeeccc-----------CCCCCeEEEEEehhhhhcce
Confidence            55555567788999999999999999988 9999999998775322211           22345678888999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      |+|...|..|.....+.+.+...+.
T Consensus       776 yTcem~~~~~~~~~~i~l~~~~~~~  800 (873)
T KOG4194|consen  776 YTCEMSNTLGTERIHICLLVYQKKK  800 (873)
T ss_pred             EEEEEEeeccceeeEEEEEEeecCC
Confidence            9999999999988887777765543

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.68  E-value=1.1e-15  Score=112.91  Aligned_cols=95  Identities=25%  Similarity=0.365  Sum_probs=80.6

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.|...+.++.+..|+.+.|.|.+.|.|.|.+.|+++++.+...         .++.+......+.|.|.++..+|+|.|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~---------~~~~~~~~~~~s~L~I~~~~~~D~G~Y   71 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEG---------EGIKIENTENSSKLTITEGQQEHCGCY   71 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCC---------CcEEEEecCCeeEEEECCCChhhCEEE
Confidence            45667788999999999999999999999999999999877531         123333334567899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEeecCC
Q psy12695        226 TCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      +|.|.|..|...+.+.|.|...|.
T Consensus        72 tc~a~N~~G~~~~~~~l~V~~~P~   95 (98)
T cd05762          72 TLEVENKLGSRQAQVNLTVVDKPD   95 (98)
T ss_pred             EEEEEcCCCceeEEEEEEEecCCC
Confidence            999999999999999999988764

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.60  E-value=8.6e-15  Score=105.89  Aligned_cols=86  Identities=30%  Similarity=0.404  Sum_probs=71.7

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...         .++.    ...+.|.|.+++.+|+|.|
T Consensus         2 p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~---------~~~~----~~~~~L~I~~v~~~D~G~Y   68 (88)
T cd05851           2 ADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPAT---------AEIS----MSGAVLKIFNIQPEDEGTY   68 (88)
T ss_pred             CceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCC---------CEEe----cCCCEEEECcCChhhCEEE
Confidence            66777788999999999999999999999999999988654321         1111    1245799999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEE
Q psy12695        226 TCRAKNGAGEVFTNISLNV  244 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v  244 (369)
                      .|.|.|..|.....+.|.|
T Consensus        69 ~C~A~N~~G~~~~~~~l~V   87 (88)
T cd05851          69 ECEAENIKGKDKHQARVYV   87 (88)
T ss_pred             EEEEEcCCCceEEEEEEEE
Confidence            9999999999999888876

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.59  E-value=2.3e-14  Score=104.81  Aligned_cols=89  Identities=28%  Similarity=0.487  Sum_probs=74.0

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +|.+...|.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+..         ..++.+......+.|.|.+++.+|+|.
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~---------~~~~~~~~~~~~~~L~i~~~~~~D~G~   73 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVS---------SQRHQITSTEYKSTFEISKVQMSDEGN   73 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCC---------CCcEEEEEcCCeeEEEECCCCcccCEe
Confidence            46777788999999999999999999999999999999876532         123333333446789999999999999


Q ss_pred             EEEEEEeCCceEEEEEEE
Q psy12695        225 YTCRAKNGAGEVFTNISL  242 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l  242 (369)
                      |.|.|.|..|..+..+.|
T Consensus        74 Y~C~a~N~~G~~~~~~~l   91 (92)
T cd05747          74 YTVVVENSEGKQEAQFTL   91 (92)
T ss_pred             EEEEEEcCCCCEeEEEEe
Confidence            999999999998888776

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.59  E-value=3.3e-14  Score=102.23  Aligned_cols=84  Identities=20%  Similarity=0.416  Sum_probs=69.1

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+...        ..++.+......+.|.|.++..+|+|.|.|.|.|.
T Consensus         3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~--------~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~   74 (86)
T cd05894           3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTET--------EGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNP   74 (86)
T ss_pred             CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccC--------CCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeC
Confidence            3567899999999999999999999999999876431        11333333344678999999999999999999999


Q ss_pred             CceEEEEEEEEE
Q psy12695        233 AGEVFTNISLNV  244 (369)
Q Consensus       233 ~g~~~~~~~l~v  244 (369)
                      .|...+.+.|.|
T Consensus        75 ~G~~~~~~~l~V   86 (86)
T cd05894          75 VGEDHASLFVKV   86 (86)
T ss_pred             CCcEEEEEEEEC
Confidence            999998888765

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.57  E-value=4.2e-14  Score=103.37  Aligned_cols=86  Identities=28%  Similarity=0.482  Sum_probs=69.1

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEee-cceeeEEEcccCCCCCEEEEEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI-NSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      ..|..+++.+|+++.|.|.+.|.|.|.+.|++++..+...         .++.+... .....|.|.+++.+|+|.|+|.
T Consensus         6 ~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~---------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   76 (92)
T cd05737           6 GLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALS---------DHYNVKVEQGKYASLTIKGVSSEDSGKYGIV   76 (92)
T ss_pred             cCCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccC---------CCEEEEEcCCCEEEEEEccCChhhCEEEEEE
Confidence            3467789999999999999999999999999998776421         12222222 2345799999999999999999


Q ss_pred             EEeCCceEEEEEEEEE
Q psy12695        229 AKNGAGEVFTNISLNV  244 (369)
Q Consensus       229 a~n~~g~~~~~~~l~v  244 (369)
                      |.|..|.....+.|.|
T Consensus        77 a~N~~G~~~~~~~v~v   92 (92)
T cd05737          77 VKNKYGGETVDVTVSV   92 (92)
T ss_pred             EEECCCcceEEEEEeC
Confidence            9999999988887764

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.55  E-value=7.6e-14  Score=101.74  Aligned_cols=90  Identities=37%  Similarity=0.642  Sum_probs=76.7

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.|...+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+..         ..++.+........|.|.++..+|+|.|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~---------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   71 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS---------SQRYQIESDGGSSSLTIKNVTREDAGTY   71 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES---------SSSEEEEEETTEEEEEESSESGGGSEEE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceee---------eeeeeeecccceeEEccCCCChhhCEEE
Confidence            4455667889999999999999999999999999999988764         2234444555788999999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEE
Q psy12695        226 TCRAKNGAGEVFTNISLNV  244 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v  244 (369)
                      .|.+.|..|..++.+.|.|
T Consensus        72 ~C~~~n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   72 TCVASNSSGEATASVNLTV   90 (90)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEEEC
Confidence            9999999999999988876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.54  E-value=1.3e-13  Score=100.31  Aligned_cols=86  Identities=26%  Similarity=0.453  Sum_probs=68.8

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA  229 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  229 (369)
                      ..+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+....         ..........+.|.|.++..+|.|.|.|.|
T Consensus         5 ~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~---------~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A   75 (90)
T cd04972           5 DGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTR---------TDTLETTVDIYNLQLSNITSETQTTVTCTA   75 (90)
T ss_pred             cCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCc---------cEEEEecCCEEEEEEecCCcccCEEEEEEE
Confidence            44567779999999999999999999999999997654211         111112233568999999999999999999


Q ss_pred             EeCCceEEEEEEEEE
Q psy12695        230 KNGAGEVFTNISLNV  244 (369)
Q Consensus       230 ~n~~g~~~~~~~l~v  244 (369)
                      .|..|...+.+.|.|
T Consensus        76 ~N~~G~~~~~~~L~v   90 (90)
T cd04972          76 ENPVGQANVSVQVTV   90 (90)
T ss_pred             ECCCCceeEEEEEeC
Confidence            999999998888764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.54  E-value=7.7e-14  Score=103.06  Aligned_cols=95  Identities=27%  Similarity=0.528  Sum_probs=70.9

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.|...+....+..|+.++|.|.+.|.|.|.+.|++++..+......    ...++.+......+.|.|.+++.+|+|.|
T Consensus         3 p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~----~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y   78 (97)
T cd05869           3 PKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKT----LDGHIVVRSHARVSSLTLKYIQYTDAGEY   78 (97)
T ss_pred             ceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccc----cCccEEEEcCccEEEEEEecCccCcCEEE
Confidence            55655555555667899999999999999999999987654321110    11123332233446899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEE
Q psy12695        226 TCRAKNGAGEVFTNISLNV  244 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v  244 (369)
                      .|.|.|..|..++.+.|.|
T Consensus        79 ~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          79 LCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEEecCCCCeeEEEEEEC
Confidence            9999999999999888865

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.54  E-value=8.8e-14  Score=102.96  Aligned_cols=94  Identities=31%  Similarity=0.484  Sum_probs=70.0

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--eEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      |.+. .+.++++.+|+.++|.|.+.|.|.|.+.|+++.  ..+....   . ....++.+......+.|.|.+++.+|+|
T Consensus         3 p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~---~-~~~~r~~v~~~~~~~~L~I~~v~~~D~G   77 (98)
T cd05870           3 PHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGD---K-SPDGRIEVKGQHGESSLHIKDVKLSDSG   77 (98)
T ss_pred             CEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCC---c-CcCceEEEeecCCeeEEEEeeCCcCCCE
Confidence            4444 357899999999999999999999999999953  2221100   0 0112344433334568999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEE
Q psy12695        224 IYTCRAKNGAGEVFTNISLNV  244 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v  244 (369)
                      .|+|.|.|..|.....+.|.|
T Consensus        78 ~Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          78 RYDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEEEEeccCCcceeEEEEeC
Confidence            999999999999888887764

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.52  E-value=1e-13  Score=96.53  Aligned_cols=74  Identities=28%  Similarity=0.410  Sum_probs=58.7

Q ss_pred             EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEee-cceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEE
Q psy12695        163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI-NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNIS  241 (369)
Q Consensus       163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~  241 (369)
                      +.|.|.+.|.|.|.|.|++++..+...        ..++.+... .+...|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~--------~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~   72 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYN--------TDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHAR   72 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCC--------CCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEE
Confidence            468999999999999999998776421        123333222 22347999999999999999999999999999988


Q ss_pred             EEE
Q psy12695        242 LNV  244 (369)
Q Consensus       242 l~v  244 (369)
                      |.|
T Consensus        73 L~V   75 (75)
T cd05892          73 LDV   75 (75)
T ss_pred             EeC
Confidence            865

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.52  E-value=7.7e-14  Score=97.54  Aligned_cols=74  Identities=32%  Similarity=0.494  Sum_probs=61.1

Q ss_pred             cCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEE
Q psy12695        159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT  238 (369)
Q Consensus       159 ~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~  238 (369)
                      +|+.+.|.|.+.|.|.|.+.|++++..+...         .++.+   ...+.|.|.+++.+|+|.|.|.|.|..|....
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~---------~~~~~---~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~   68 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVD---------RRHLV---LSSGTLRISRVALHDQGQYECQAVNIVGSQRT   68 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCC---------CCeEE---ccCCeEEEeeCCHHhCEEEEEEEEeCCCceeE
Confidence            6899999999999999999999998765421         11111   13468999999999999999999999999998


Q ss_pred             EEEEEE
Q psy12695        239 NISLNV  244 (369)
Q Consensus       239 ~~~l~v  244 (369)
                      .+.|.|
T Consensus        69 ~~~L~V   74 (74)
T cd05745          69 VAQLTV   74 (74)
T ss_pred             EEEEeC
Confidence            888765

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.51  E-value=1.9e-13  Score=100.95  Aligned_cols=94  Identities=30%  Similarity=0.521  Sum_probs=71.1

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.|. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.....    ....++.+......+.|.|.+++.+|+|.|
T Consensus         3 P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   77 (96)
T cd05732           3 PKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDK----SLDGRIVVRGHARVSSLTLKDVQLTDAGRY   77 (96)
T ss_pred             ccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCc----cccceEEEeCCccEEEEEECcCCcCcCEEe
Confidence            4554 45678899999999999999999999999998754332110    011233333333457899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEE
Q psy12695        226 TCRAKNGAGEVFTNISLNV  244 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v  244 (369)
                      .|.|.|..|..+..+.|.|
T Consensus        78 ~C~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          78 DCEASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEEEEeCCCCcEEEEEEeC
Confidence            9999999999988887764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.51  E-value=1.8e-13  Score=99.26  Aligned_cols=85  Identities=32%  Similarity=0.434  Sum_probs=69.4

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEE
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYT  226 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  226 (369)
                      .+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...         ....    ...+.|.|.+++.+|+|.|.
T Consensus         3 ~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~---------~~~~----~~~~~L~i~~v~~~D~G~Y~   69 (88)
T cd04968           3 IIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSS---------AEIS----MSGAVLKIPNIQFEDEGTYE   69 (88)
T ss_pred             cEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCc---------cEEE----EeCCEEEECCCCcccCEEEE
Confidence            3445678888999999999999999999999999987644321         0111    23568999999999999999


Q ss_pred             EEEEeCCceEEEEEEEEE
Q psy12695        227 CRAKNGAGEVFTNISLNV  244 (369)
Q Consensus       227 C~a~n~~g~~~~~~~l~v  244 (369)
                      |.|.|..|.....+.|.|
T Consensus        70 C~a~N~~G~~~~~~~l~V   87 (88)
T cd04968          70 CEAENIKGKDTHQGRIYV   87 (88)
T ss_pred             EEEEECCCcEEEEEEEEE
Confidence            999999999998888876

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.51  E-value=1.4e-13  Score=99.02  Aligned_cols=84  Identities=26%  Similarity=0.574  Sum_probs=69.5

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      +...|.++.+..|+.+.|.|.+.|.|.|.+.|++++..+...         .++..    ..+.|.|.++..+|+|.|.|
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~---------~~~~~----~~~~L~i~~~~~~D~G~Y~C   68 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASE---------NRIEV----EAGDLRITKLSLSDSGMYQC   68 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCC---------CeEEE----eCCEEEEeeCCHHHCEEEEE
Confidence            345678899999999999999999999999999998765321         12211    24579999999999999999


Q ss_pred             EEEeCCceEEEEEEEEE
Q psy12695        228 RAKNGAGEVFTNISLNV  244 (369)
Q Consensus       228 ~a~n~~g~~~~~~~l~v  244 (369)
                      .|.|..|...+++.|.|
T Consensus        69 ~a~N~~G~~~~~~~l~V   85 (85)
T cd05728          69 VAENKHGTIYASAELAV   85 (85)
T ss_pred             EEECCCCeEEEEEEEEC
Confidence            99999999998888764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.50  E-value=2.5e-13  Score=100.43  Aligned_cols=85  Identities=22%  Similarity=0.395  Sum_probs=68.3

Q ss_pred             CCeeeccCCeEEEEEEeeC-CCCCeEEEEeCCeEeeecccccccCCcceEEEEe----ecceeeEEEcccCCCCCEEEEE
Q psy12695        153 PDVTAEENENVTLSCRATG-SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT----INSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      ..+++.+|+.+.|.|.+.| .|+|.+.|+|++..+.....        ......    ....+.|.|..+..+|+|.|+|
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~--------~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc   82 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLT--------EIVTSENESEYRYVSELKLVRLKESEAGTYTF   82 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcc--------eeEEEeccCcceEEEEEEEeecCHhhCeeEEE
Confidence            5688999999999999999 99999999999987753211        111110    0124689999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEe
Q psy12695        228 RAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       228 ~a~n~~g~~~~~~~l~v~  245 (369)
                      .|.|..|..+..+.|.|.
T Consensus        83 ~A~N~~G~~~~t~~L~V~  100 (101)
T cd04975          83 LASNSDASKSLTFELYVN  100 (101)
T ss_pred             EEECCCccEEEEEEEEEE
Confidence            999999999999988875

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.50  E-value=1.6e-13  Score=95.23  Aligned_cols=73  Identities=29%  Similarity=0.499  Sum_probs=60.3

Q ss_pred             CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy12695        160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN  239 (369)
Q Consensus       160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~  239 (369)
                      |+.+.|.|.+.|.|.|.|.|++++..+...         .++.+   ...+.|.|.+++.+|+|.|.|.|.|..|.....
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~---------~r~~~---~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   68 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNN---------SRISI---WDDGSLEILNITKLDEGSYTCFAENNRGKANST   68 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccC---------CCEEE---cCCCEEEECcCChhHCEEEEEEEECCCCceeEE
Confidence            788999999999999999999988755321         12222   124679999999999999999999999999998


Q ss_pred             EEEEE
Q psy12695        240 ISLNV  244 (369)
Q Consensus       240 ~~l~v  244 (369)
                      +.|.|
T Consensus        69 ~~l~~   73 (73)
T cd05852          69 GVLSV   73 (73)
T ss_pred             EEEEC
Confidence            88864

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.49  E-value=2.2e-13  Score=95.07  Aligned_cols=74  Identities=34%  Similarity=0.490  Sum_probs=58.4

Q ss_pred             EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeec-ceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEE
Q psy12695        163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN-SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNIS  241 (369)
Q Consensus       163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~  241 (369)
                      ++|.|.+.|.|.|.|.|++++..+...        ..++.+.... +...|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~--------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~   72 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHN--------TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTAR   72 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCC--------CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEE
Confidence            478999999999999999998776421        1233332221 2236999999999999999999999999999988


Q ss_pred             EEE
Q psy12695        242 LNV  244 (369)
Q Consensus       242 l~v  244 (369)
                      |.|
T Consensus        73 L~V   75 (75)
T cd05893          73 LDV   75 (75)
T ss_pred             EeC
Confidence            865

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.49  E-value=5.7e-13  Score=98.09  Aligned_cols=84  Identities=35%  Similarity=0.495  Sum_probs=68.8

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      .+..+..|+.+.|.|.+.|.|.|.+.|++++..+...        ..++.  .....+.|.|.+++.+|+|.|+|.|.|.
T Consensus        11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~--------~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   80 (95)
T cd05730          11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESG--------EEKYS--FNEDGSEMTILDVDKLDEAEYTCIAENK   80 (95)
T ss_pred             cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCC--------CCEEE--EeCCCCEEEECCCChhhCEEEEEEEEcC
Confidence            4567899999999999999999999999998765421        11222  2233457999999999999999999999


Q ss_pred             CceEEEEEEEEEee
Q psy12695        233 AGEVFTNISLNVIK  246 (369)
Q Consensus       233 ~g~~~~~~~l~v~~  246 (369)
                      .|.....+.|.|..
T Consensus        81 ~G~~~~~~~L~V~~   94 (95)
T cd05730          81 AGEQEAEIHLKVFA   94 (95)
T ss_pred             CCeEEEEEEEEEEe
Confidence            99999999998864

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.48  E-value=5.6e-13  Score=97.67  Aligned_cols=86  Identities=20%  Similarity=0.387  Sum_probs=65.7

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCC-CeEEEEe-CCeEeeecccccccCCcceEEEEe-ecceeeEEEcccCCCCCEEEEE
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPV-PKIKWIF-KEKIIANISSGLANMNKRQYIIKT-INSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~-p~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      .|.+..+.+|+.++|.|.+.|.|. |.+.|++ ++..+...        ..++.+.. ....+.|.|.+++.+|+|.|+|
T Consensus         6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~--------~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC   77 (96)
T cd05865           6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPN--------QQRISVVRNDDYSSTLTIYNANIDDAGIYKC   77 (96)
T ss_pred             eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCcccc--------CCeEEEEeCCCCceEEEEeccChhhCEEEEE
Confidence            456778999999999999999995 7999998 45433221        11332221 1224789999999999999999


Q ss_pred             EEEeCC-ceEEEEEEEEE
Q psy12695        228 RAKNGA-GEVFTNISLNV  244 (369)
Q Consensus       228 ~a~n~~-g~~~~~~~l~v  244 (369)
                      .|+|.. |..++++.|.|
T Consensus        78 ~A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          78 VVSNEDEGESEATVNVKI   95 (96)
T ss_pred             EEEcCCCCcEEEEEEEEE
Confidence            999997 88888888876

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.48  E-value=7.2e-13  Score=95.76  Aligned_cols=81  Identities=28%  Similarity=0.475  Sum_probs=65.0

Q ss_pred             CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEe----ecceeeEEEcccCCCCCEEEEEEEEeCCce
Q psy12695        160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT----INSLSNLTIVAVTMSDSGIYTCRAKNGAGE  235 (369)
Q Consensus       160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~  235 (369)
                      |+.+.|.|.+.|.|++.+.|++++..+...        ..++.+..    ....+.|.|.++..+|+|.|+|.|.|..|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~--------~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~   72 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPE--------MSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGE   72 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCC--------CCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCc
Confidence            789999999999999999999988755321        11222221    112368999999999999999999999999


Q ss_pred             EEEEEEEEEeecC
Q psy12695        236 VFTNISLNVIKVE  248 (369)
Q Consensus       236 ~~~~~~l~v~~~~  248 (369)
                      ..+.+.|.|..+|
T Consensus        73 ~~~~~~L~V~~~P   85 (88)
T cd05735          73 DRGIIQLTVQEPP   85 (88)
T ss_pred             ceEEEEEEEeCCC
Confidence            9999999998765

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.48  E-value=6.9e-13  Score=96.78  Aligned_cols=86  Identities=29%  Similarity=0.476  Sum_probs=68.7

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEee-cceeeEEEcccCCCCCEEEEEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI-NSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      ..|..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+...         .++..... ...+.|.|.+++.+|+|.|+|.
T Consensus         6 ~~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~---------~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   76 (92)
T cd05891           6 GLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELS---------EHYSVKLEQGKYASLTIKGVTSEDSGKYSIN   76 (92)
T ss_pred             cCCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCC---------CCEEEEEcCCCEEEEEECCCChhhCEEEEEE
Confidence            3467889999999999999999999999999998765421         12222211 1235799999999999999999


Q ss_pred             EEeCCceEEEEEEEEE
Q psy12695        229 AKNGAGEVFTNISLNV  244 (369)
Q Consensus       229 a~n~~g~~~~~~~l~v  244 (369)
                      |.|..|.....+.|.|
T Consensus        77 a~N~~G~~~~~~~v~~   92 (92)
T cd05891          77 VKNKYGGETVDVTVSV   92 (92)
T ss_pred             EEeCCCceeeEEEEEC
Confidence            9999999998888764

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.48  E-value=4.9e-13  Score=93.95  Aligned_cols=75  Identities=28%  Similarity=0.574  Sum_probs=61.1

Q ss_pred             CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy12695        160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN  239 (369)
Q Consensus       160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~  239 (369)
                      |+.+.|.|.+.|.|.|.+.|++++..+.....      ..++..    ..+.|.|.+++.+|+|.|.|.|.|..|.....
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~------~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   70 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDP------DPRRHV----SSGALILTDVQPSDTAVYQCEARNRHGNLLAN   70 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCC------CceEEe----eCCEEEECCCChhhCEEEEEEEECCCCeEEEE
Confidence            78999999999999999999999876643211      112211    24679999999999999999999999999999


Q ss_pred             EEEEE
Q psy12695        240 ISLNV  244 (369)
Q Consensus       240 ~~l~v  244 (369)
                      +.|.|
T Consensus        71 ~~l~V   75 (76)
T cd05867          71 AHVHV   75 (76)
T ss_pred             EEEEE
Confidence            88877

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.47  E-value=2.9e-13  Score=91.75  Aligned_cols=66  Identities=32%  Similarity=0.461  Sum_probs=56.0

Q ss_pred             EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEE
Q psy12695        163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL  242 (369)
Q Consensus       163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l  242 (369)
                      ++|.|.+.|.|.|.+.|+|++..+...                 ...+.|.|.++..+|+|.|+|.|+|..|..++++.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~-----------------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~   63 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK-----------------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISL   63 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc-----------------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEE
Confidence            468999999999999999999876410                 124689999999999999999999999988887777


Q ss_pred             EEe
Q psy12695        243 NVI  245 (369)
Q Consensus       243 ~v~  245 (369)
                      .+.
T Consensus        64 ~l~   66 (67)
T cd05863          64 ELI   66 (67)
T ss_pred             EEE
Confidence            664

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.47  E-value=4.3e-13  Score=94.13  Aligned_cols=76  Identities=29%  Similarity=0.473  Sum_probs=61.2

Q ss_pred             CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy12695        160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN  239 (369)
Q Consensus       160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~  239 (369)
                      |+.++|.|.+.|.|.|.|.|++++..+...+..      ....    ...+.|.|.+++.+|+|.|.|.|.|..|...+.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~------~~~~----~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~   70 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTD------PSRK----VDGDTIIFSKVQERSSAVYQCNASNEYGYLLAN   70 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCC------ceEE----ecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEE
Confidence            788999999999999999999998776422110      0111    123578999999999999999999999999999


Q ss_pred             EEEEEe
Q psy12695        240 ISLNVI  245 (369)
Q Consensus       240 ~~l~v~  245 (369)
                      +.|.|.
T Consensus        71 ~~l~v~   76 (76)
T cd05868          71 AFVNVL   76 (76)
T ss_pred             EEEEeC
Confidence            998873

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.47  E-value=9.9e-13  Score=94.67  Aligned_cols=82  Identities=28%  Similarity=0.468  Sum_probs=65.0

Q ss_pred             eeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695        155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG  234 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g  234 (369)
                      +.+.+|+.+.|.|.+.|.|.|.+.|++++..+......      ..+  ........|.|.++..+|+|.|+|.|.|..|
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~------~~~--~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G   75 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRI------GGY--KVRNQHWSLIMESVVPSDKGNYTCVVENEYG   75 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCce------eee--EEeCCceEEEEccCCcccCEEEEEEEEeCCC
Confidence            56789999999999999999999999998876432110      011  1122345799999999999999999999999


Q ss_pred             eEEEEEEEEE
Q psy12695        235 EVFTNISLNV  244 (369)
Q Consensus       235 ~~~~~~~l~v  244 (369)
                      .....+.|.|
T Consensus        76 ~~~~~~~l~v   85 (85)
T cd05857          76 SINHTYHLDV   85 (85)
T ss_pred             EEEEEEEEEC
Confidence            9999888865

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.47  E-value=1.2e-12  Score=93.96  Aligned_cols=82  Identities=26%  Similarity=0.440  Sum_probs=63.4

Q ss_pred             CeEEEEEEeeCCCCC--eEEEEeCCeEeeecccccccCCcceE-EEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEE
Q psy12695        161 ENVTLSCRATGSPVP--KIKWIFKEKIIANISSGLANMNKRQY-IIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF  237 (369)
Q Consensus       161 ~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~  237 (369)
                      ++++|.|.+.|.|.|  .+.|++++..+.....      ..++ ........+.|.|.+++..|+|.|+|.|.|..|..+
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~------~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~   74 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKP------NGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSAS   74 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCC------CCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEE
Confidence            468999999999988  4799999877643221      1111 112223457899999999999999999999999999


Q ss_pred             EEEEEEEeecC
Q psy12695        238 TNISLNVIKVE  248 (369)
Q Consensus       238 ~~~~l~v~~~~  248 (369)
                      +.+.|.|..+|
T Consensus        75 ~~~~L~V~~~P   85 (85)
T cd05854          75 ASATLVVRGPP   85 (85)
T ss_pred             EEEEEEEECCC
Confidence            99999998653

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.47  E-value=7.7e-13  Score=92.48  Aligned_cols=74  Identities=34%  Similarity=0.449  Sum_probs=60.5

Q ss_pred             eEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEE
Q psy12695        162 NVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNIS  241 (369)
Q Consensus       162 ~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~  241 (369)
                      .+.|.|.+.|.|.|.+.|++++..+..         ..++.+......+.|.|.++..+|+|.|+|.|.|..|..+..+.
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~---------~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   71 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKL---------SGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATIN   71 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCC---------CCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEE
Confidence            368999999999999999999987632         12333333445678999999999999999999999999998888


Q ss_pred             EEE
Q psy12695        242 LNV  244 (369)
Q Consensus       242 l~v  244 (369)
                      |.|
T Consensus        72 l~V   74 (74)
T cd05748          72 VKV   74 (74)
T ss_pred             EEC
Confidence            765

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.45  E-value=9.3e-13  Score=93.03  Aligned_cols=76  Identities=34%  Similarity=0.507  Sum_probs=60.6

Q ss_pred             CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy12695        160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN  239 (369)
Q Consensus       160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~  239 (369)
                      |+++.|.|.+.|.|.|.+.|++++..+..         ..++.+......+.|.|.+++.+|+|.|.|.|.|..|.....
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~---------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   71 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPD---------SARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGI   71 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCC---------CCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEec
Confidence            78999999999999999999998866532         123333333445789999999999999999999999998777


Q ss_pred             EEEEE
Q psy12695        240 ISLNV  244 (369)
Q Consensus       240 ~~l~v  244 (369)
                      +.+.+
T Consensus        72 ~~~~~   76 (78)
T cd05743          72 PDGIL   76 (78)
T ss_pred             ccEEE
Confidence            65544

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.45  E-value=1e-12  Score=91.94  Aligned_cols=74  Identities=30%  Similarity=0.405  Sum_probs=58.1

Q ss_pred             EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEee-cceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEE
Q psy12695        163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI-NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNIS  241 (369)
Q Consensus       163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~  241 (369)
                      ++|.|.+.|.|.|.+.|++++..+...        ..++.+... .+...|.|.+++.+|+|.|+|.|.|..|..+..+.
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~--------~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   72 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYN--------TDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNAR   72 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCC--------CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEE
Confidence            478999999999999999998776421        112332221 23347999999999999999999999999999888


Q ss_pred             EEE
Q psy12695        242 LNV  244 (369)
Q Consensus       242 l~v  244 (369)
                      |.|
T Consensus        73 l~v   75 (75)
T cd05744          73 LDV   75 (75)
T ss_pred             EeC
Confidence            764

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.44  E-value=1.2e-12  Score=92.00  Aligned_cols=75  Identities=27%  Similarity=0.473  Sum_probs=61.8

Q ss_pred             CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy12695        160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN  239 (369)
Q Consensus       160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~  239 (369)
                      |+.++|.|.+.|.|.|.|.|++++..+......          .......+.|.|.+++.+|+|.|+|.|.|..|...+.
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~----------~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~   70 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD----------PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLAN   70 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc----------ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEe
Confidence            789999999999999999999998766532211          0112235689999999999999999999999999999


Q ss_pred             EEEEE
Q psy12695        240 ISLNV  244 (369)
Q Consensus       240 ~~l~v  244 (369)
                      +.|.|
T Consensus        71 ~~l~V   75 (76)
T cd04978          71 AFVHV   75 (76)
T ss_pred             EEEEE
Confidence            98877

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.43  E-value=1.5e-12  Score=94.51  Aligned_cols=86  Identities=23%  Similarity=0.419  Sum_probs=64.6

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA  229 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  229 (369)
                      ..+.+..+.+|+.+.|.|.+.|.|. .+.|+++++.....        ..++.+........|.|.++..+|+|.|+|.|
T Consensus         5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~--------~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A   75 (92)
T cd05866           5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVS--------SQRVVVQKEGVRSRLTIYNANIEDAGIYRCQA   75 (92)
T ss_pred             EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecC--------CCCEEEEeCCCeeEEEEecCChHHCEEEEEEE
Confidence            3457788999999999999999998 89999864432211        12333333333468999999999999999999


Q ss_pred             EeCCceE-EEEEEEEE
Q psy12695        230 KNGAGEV-FTNISLNV  244 (369)
Q Consensus       230 ~n~~g~~-~~~~~l~v  244 (369)
                      +|..|.. .+++.|.+
T Consensus        76 ~N~~G~~~~~~i~l~~   91 (92)
T cd05866          76 TDAKGQTQEATVVLEI   91 (92)
T ss_pred             EcCCCcEEEEEEEEEE
Confidence            9999985 55566554

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.43  E-value=1.5e-12  Score=96.45  Aligned_cols=90  Identities=18%  Similarity=0.283  Sum_probs=68.3

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ...++..|+.+.|.|.+.|.|.|.+.|++++..+...........   .........+.|.|.+++.+|+|.|+|.|.|.
T Consensus        11 ~~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~---~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~   87 (101)
T cd05859          11 QLEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSE---HNVQETRYVSKLKLIRAKEEDSGLYTALAQNE   87 (101)
T ss_pred             ceEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEecc---ccccceeeccEEEEeeCCHHHCEEEEEEEEcC
Confidence            367788999999999999999999999999988753221100000   00001112468999999999999999999999


Q ss_pred             CceEEEEEEEEEe
Q psy12695        233 AGEVFTNISLNVI  245 (369)
Q Consensus       233 ~g~~~~~~~l~v~  245 (369)
                      .|..+.++.|.|.
T Consensus        88 ~g~~~~t~~l~V~  100 (101)
T cd05859          88 DAVKSYTFALQIQ  100 (101)
T ss_pred             CceEEEEEEEEEE
Confidence            9999998888875

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.42  E-value=1.4e-12  Score=90.32  Aligned_cols=71  Identities=30%  Similarity=0.626  Sum_probs=57.0

Q ss_pred             eEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEE
Q psy12695        162 NVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNIS  241 (369)
Q Consensus       162 ~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~  241 (369)
                      ++.|.|.+.|.|.|.+.|++++..+...         .++.+.   ..+.|.|.+++.+|+|.|+|.|.|..|...+.+.
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~---------~~~~~~---~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~   68 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPS---------DYFKIV---KEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQ   68 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCC---------CCEEEE---ecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEE
Confidence            3789999999999999999998765421         122211   2356889999999999999999999999999888


Q ss_pred             EEE
Q psy12695        242 LNV  244 (369)
Q Consensus       242 l~v  244 (369)
                      |.|
T Consensus        69 L~V   71 (71)
T cd05723          69 LII   71 (71)
T ss_pred             EEC
Confidence            864

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.42  E-value=1.7e-12  Score=94.26  Aligned_cols=81  Identities=31%  Similarity=0.472  Sum_probs=64.5

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      .+.++.+.+|+.++|.|.+.|. .|.+.|++++..+..          .+.  ......+.|.|.+++.+|+|.|.|.|.
T Consensus         9 ~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~----------~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~   75 (91)
T cd05740           9 SVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP----------PRL--QLSNDNRTLTFNNVTRSDTGHYQCEAS   75 (91)
T ss_pred             ccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC----------CCE--EEeCCCCEEEECcCChhhCEEEEEEEE
Confidence            3467899999999999999999 999999999876532          111  122345689999999999999999999


Q ss_pred             eCCceE-EEEEEEEE
Q psy12695        231 NGAGEV-FTNISLNV  244 (369)
Q Consensus       231 n~~g~~-~~~~~l~v  244 (369)
                      |..|.. +..+.|.|
T Consensus        76 N~~G~~~S~~~~L~V   90 (91)
T cd05740          76 NEVSNMTSDPYILNV   90 (91)
T ss_pred             cCCCCEEeeeEEEEe
Confidence            999984 44666765

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.41  E-value=1.7e-12  Score=90.39  Aligned_cols=73  Identities=33%  Similarity=0.518  Sum_probs=60.0

Q ss_pred             CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy12695        160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN  239 (369)
Q Consensus       160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~  239 (369)
                      |+.+.|.|.+.|.|.|.+.|++++..+...         .++.+   ...+.|.|.+++.+|+|.|+|.|.|..|.....
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~---------~~~~~---~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   68 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNS---------SRICI---WPDGSLEILNVTKSDEGKYTCFAENFFGKANST   68 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccC---------CCEEE---CCCCeEEEccCChhHCEEEEEEEECCCCceEEE
Confidence            788999999999999999999998765421         11211   123579999999999999999999999999998


Q ss_pred             EEEEE
Q psy12695        240 ISLNV  244 (369)
Q Consensus       240 ~~l~v  244 (369)
                      +.|.|
T Consensus        69 ~~l~V   73 (73)
T cd04969          69 GSLSV   73 (73)
T ss_pred             EEEEC
Confidence            88865

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.41  E-value=7e-13  Score=96.40  Aligned_cols=78  Identities=24%  Similarity=0.391  Sum_probs=57.7

Q ss_pred             CCeEEEEEEeeCCCCCeEEEEeCCe----EeeecccccccCCcceEEEE-------eecceeeEEEcccCCCCCEEEEEE
Q psy12695        160 NENVTLSCRATGSPVPKIKWIFKEK----IIANISSGLANMNKRQYIIK-------TINSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       160 G~~~~l~C~~~g~p~p~i~W~~~~~----~~~~~~~~~~~~~~~~~~~~-------~~~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      |+.++|.|.+.|.|.|.|.|++++.    .+..  .     +.......       .......|.|.+++.+|+|.|+|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   73 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGP--D-----GLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCL   73 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCC--C-----CCceEEEEEecCCcccccccceEEEeccccccCcEEEEE
Confidence            6889999999999999999999641    1110  0     00000000       012235799999999999999999


Q ss_pred             EEeCCceEEEEEEEEE
Q psy12695        229 AKNGAGEVFTNISLNV  244 (369)
Q Consensus       229 a~n~~g~~~~~~~l~v  244 (369)
                      |.|..|...+++.|.|
T Consensus        74 A~N~~G~~~~sa~L~V   89 (90)
T cd04974          74 AGNSIGPSHHSAWLTV   89 (90)
T ss_pred             eecccCcccCCEEEEe
Confidence            9999999999998887

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.41  E-value=2.9e-12  Score=93.22  Aligned_cols=85  Identities=32%  Similarity=0.477  Sum_probs=64.6

Q ss_pred             CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy12695        160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN  239 (369)
Q Consensus       160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~  239 (369)
                      |+.++|.|.+.|.|.|.+.|++++.......... .....++.+.   ..+.|.|.+++.+|+|.|+|.|.|..|.....
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~-~~~~~r~~v~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   76 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQP-PQSSSRFSVS---QTGDLTITNVQRSDVGYYICQTLNVAGSILTK   76 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccC-CCCCCeEEEC---CCCeEEEeeCChhhCEEEEEEEEcCCCceEEE
Confidence            7899999999999999999999876432111100 0112234331   24579999999999999999999999999999


Q ss_pred             EEEEEeecC
Q psy12695        240 ISLNVIKVE  248 (369)
Q Consensus       240 ~~l~v~~~~  248 (369)
                      +.|.|....
T Consensus        77 ~~l~V~~~~   85 (90)
T cd05726          77 AYLEVTDVI   85 (90)
T ss_pred             EEEEEeecc
Confidence            999998654

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.40  E-value=4.9e-12  Score=93.59  Aligned_cols=90  Identities=32%  Similarity=0.416  Sum_probs=68.4

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCC-eEEEEeCCeEeeecccccccCCcceEEEEee----cceeeEEEcccCCC
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTI----NSLSNLTIVAVTMS  220 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~  220 (369)
                      |+++..+....+.+|+.+.|.|.+.|.|.| .|.|++++..+.....       .++.+...    ...+.|.|.+++.+
T Consensus         2 pp~i~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~-------~r~~i~~~~~~~~~~s~L~I~~v~~~   74 (98)
T cd05758           2 PPIITSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSS-------GRYTVETDPSPGGVLSTLTISNTQES   74 (98)
T ss_pred             CCeEcCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCC-------CCEEEEEecCCCceEEEEEECCcccc
Confidence            445555677889999999999999999999 5999999876653221       12322221    12358999999985


Q ss_pred             C-CEEEEEEEEeCCceEEEEEEE
Q psy12695        221 D-SGIYTCRAKNGAGEVFTNISL  242 (369)
Q Consensus       221 D-~G~Y~C~a~n~~g~~~~~~~l  242 (369)
                      | .|.|.|.|.|..|.....+.|
T Consensus        75 d~~G~Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          75 DFQTSYNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             ccceeEEEEEEcCCCcccEEEEe
Confidence            5 899999999999998887765

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.39  E-value=2e-12  Score=89.50  Aligned_cols=70  Identities=29%  Similarity=0.512  Sum_probs=56.7

Q ss_pred             EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEE
Q psy12695        163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL  242 (369)
Q Consensus       163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l  242 (369)
                      +.|.|.+.|.|.|.+.|++++..+...          +.  ......+.|.|.+++.+|+|.|.|.|.|..|.....+.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~----------~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   68 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPN----------RT--KKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTV   68 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCC----------ce--eEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEE
Confidence            468999999999999999988654321          00  112245689999999999999999999999999988888


Q ss_pred             EE
Q psy12695        243 NV  244 (369)
Q Consensus       243 ~v  244 (369)
                      .|
T Consensus        69 ~V   70 (71)
T cd05876          69 TV   70 (71)
T ss_pred             EE
Confidence            76

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.39  E-value=2.7e-12  Score=89.98  Aligned_cols=74  Identities=32%  Similarity=0.587  Sum_probs=56.8

Q ss_pred             EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEE
Q psy12695        163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL  242 (369)
Q Consensus       163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l  242 (369)
                      ++|.|.+.|.|.|.+.|++++.......      ...++.+  ....+.|.|.+++.+|+|.|.|.|.|..|.....+.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~------~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l   72 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAA------RERRMHV--MPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATL   72 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcc------cccceEE--ecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEE
Confidence            3689999999999999999875422111      1112222  2234579999999999999999999999999999888


Q ss_pred             EE
Q psy12695        243 NV  244 (369)
Q Consensus       243 ~v  244 (369)
                      .|
T Consensus        73 ~V   74 (75)
T cd05763          73 TV   74 (75)
T ss_pred             EE
Confidence            87

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.39  E-value=6e-12  Score=93.53  Aligned_cols=95  Identities=32%  Similarity=0.524  Sum_probs=66.2

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEE--cccCCCCCE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTI--VAVTMSDSG  223 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I--~~v~~~D~G  223 (369)
                      |.+...+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+......    ...+...........+.+  ..+..+|+|
T Consensus         2 P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~D~G   77 (100)
T cd07693           2 PRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDD----PRSHRIVLPSGSLFFLRVVHGRKGRSDEG   77 (100)
T ss_pred             CeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCC----CCcceEEecCCcEEEEEeeccCCCcCcCE
Confidence            66777788999999999999999999999999999998766431100    001111111111112222  234689999


Q ss_pred             EEEEEEEeCCce-EEEEEEEEE
Q psy12695        224 IYTCRAKNGAGE-VFTNISLNV  244 (369)
Q Consensus       224 ~Y~C~a~n~~g~-~~~~~~l~v  244 (369)
                      .|+|.|.|..|. .+..+.|.|
T Consensus        78 ~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          78 VYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEEEccccceecceEEEEe
Confidence            999999999999 667777765

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.38  E-value=7e-12  Score=90.15  Aligned_cols=82  Identities=26%  Similarity=0.406  Sum_probs=62.4

Q ss_pred             CeEEEEEEeeCCCCC--eEEEEeCCeEeeecccccccCCcceE-EEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEE
Q psy12695        161 ENVTLSCRATGSPVP--KIKWIFKEKIIANISSGLANMNKRQY-IIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF  237 (369)
Q Consensus       161 ~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~  237 (369)
                      +.+.|.|.+.|.|.|  .+.|++++..+......      .++ ........+.|.|.+++..|+|.|+|.|.|..|..+
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~   74 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDG------GHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLS   74 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCC------ccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEE
Confidence            468899999999988  56899998776432110      011 111122457899999999999999999999999999


Q ss_pred             EEEEEEEeecC
Q psy12695        238 TNISLNVIKVE  248 (369)
Q Consensus       238 ~~~~l~v~~~~  248 (369)
                      +.+.|.|..+|
T Consensus        75 ~~~~l~V~~pP   85 (85)
T cd04970          75 ASADLIVRGPP   85 (85)
T ss_pred             EEEEEEEECCC
Confidence            99999998754

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.38  E-value=2.8e-12  Score=91.61  Aligned_cols=79  Identities=29%  Similarity=0.551  Sum_probs=62.8

Q ss_pred             eeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695        155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG  234 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g  234 (369)
                      +.+..|+.+.|.|.+.|.|.|.+.|++++..+......           ........|.|.+++.+|+|.|+|.|.|..|
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~-----------~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   72 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIG-----------ESRKKKWTLSLKNLKPEDSGKYTCHVSNRAG   72 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccc-----------eecCceEEEEEccCChhhCEEEEEEEEcCCc
Confidence            45678999999999999999999999988765321110           1112346899999999999999999999999


Q ss_pred             eEEEEEEEEE
Q psy12695        235 EVFTNISLNV  244 (369)
Q Consensus       235 ~~~~~~~l~v  244 (369)
                      .....+.|.|
T Consensus        73 ~~~~~~~v~v   82 (82)
T cd05856          73 EINATYKVDV   82 (82)
T ss_pred             cEEEEEEEeC
Confidence            9888877754

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.37  E-value=1.2e-11  Score=93.20  Aligned_cols=96  Identities=25%  Similarity=0.358  Sum_probs=69.8

Q ss_pred             CCCccCCCCCee-e---ccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEe----ecceeeEEEcc
Q psy12695        145 SPNIRPITPDVT-A---EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT----INSLSNLTIVA  216 (369)
Q Consensus       145 ~p~i~~~~~~~~-~---~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~  216 (369)
                      .|.|...+.... +   ..|..++|.|.+.|.|.|.+.|++++..+.....        ++....    ....+.|.|.+
T Consensus         4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~--------r~~~~~~~~~~~~~s~L~I~~   75 (109)
T cd05773           4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNP--------RYEETTEHTGTVHTSILTIIN   75 (109)
T ss_pred             ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCC--------eEEEEeeccCccceeEEEECc
Confidence            455555544222 2   3568999999999999999999999876642111        121111    11246899999


Q ss_pred             cC-CCCCEEEEEEEEeCCceEEEEEEEEEeecC
Q psy12695        217 VT-MSDSGIYTCRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       217 v~-~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      +. .+|.|.|+|.|.|..|.....+.|.|...|
T Consensus        76 v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p  108 (109)
T cd05773          76 VSAALDYALFTCTAHNSLGEDSLDIQLVSTSRP  108 (109)
T ss_pred             CCccCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence            97 699999999999999999999999988664

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.37  E-value=2.4e-12  Score=88.29  Aligned_cols=69  Identities=25%  Similarity=0.379  Sum_probs=55.0

Q ss_pred             EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEE
Q psy12695        163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL  242 (369)
Q Consensus       163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l  242 (369)
                      +.|.|.+.|.|.|.+.|++++..+....         ++     .....|.|.++..+|+|.|+|.|.|..|......++
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~---------~~-----~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~   66 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNH---------TF-----KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTF   66 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCC---------EE-----ccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEE
Confidence            3689999999999999999998764311         11     123579999999999999999999999987776666


Q ss_pred             EEe
Q psy12695        243 NVI  245 (369)
Q Consensus       243 ~v~  245 (369)
                      .+.
T Consensus        67 ~l~   69 (70)
T cd05864          67 QLV   69 (70)
T ss_pred             EEE
Confidence            553

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.37  E-value=3.3e-12  Score=92.91  Aligned_cols=84  Identities=23%  Similarity=0.331  Sum_probs=57.6

Q ss_pred             CCeEEEEEEeeCCCCCeEEEEeCC----eEeeecccccccC-CcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695        160 NENVTLSCRATGSPVPKIKWIFKE----KIIANISSGLANM-NKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG  234 (369)
Q Consensus       160 G~~~~l~C~~~g~p~p~i~W~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g  234 (369)
                      |+.++|.|.+.|.|.|.|.|++.+    ..+.......... ..... .......+.|.|.+++.+|+|.|+|.|.|..|
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGV-NTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCc-eecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence            788999999999999999999853    2221100000000 00000 00011236899999999999999999999999


Q ss_pred             eEEEEEEEEE
Q psy12695        235 EVFTNISLNV  244 (369)
Q Consensus       235 ~~~~~~~l~v  244 (369)
                      ....++.|.|
T Consensus        80 ~~~~~a~L~V   89 (90)
T cd05858          80 ISHHSAWLTV   89 (90)
T ss_pred             cccceEEEEE
Confidence            9999888877

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.36  E-value=6.5e-12  Score=86.14  Aligned_cols=68  Identities=24%  Similarity=0.455  Sum_probs=53.6

Q ss_pred             CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy12695        160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN  239 (369)
Q Consensus       160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~  239 (369)
                      |+.++|.|.+.|.|.|.|.|++++..+....         ++.    .....|.|.++  .|+|.|+|.|.|..|...+.
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~---------~~~----~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~   65 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKED---------EMP----VGRNVLELTNI--YESANYTCVAISSLGMIEAT   65 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCcc---------cee----cCccEEEEecc--ccCeeEEEEEEeCCCEEEEE
Confidence            6889999999999999999999987653211         111    12346888887  47999999999999998887


Q ss_pred             EEE
Q psy12695        240 ISL  242 (369)
Q Consensus       240 ~~l  242 (369)
                      +.|
T Consensus        66 a~l   68 (69)
T cd05739          66 AQV   68 (69)
T ss_pred             EEE
Confidence            765

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.36  E-value=5.1e-12  Score=92.53  Aligned_cols=81  Identities=31%  Similarity=0.551  Sum_probs=60.6

Q ss_pred             CCccCCCCCeeec---cCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccC-CCC
Q psy12695        146 PNIRPITPDVTAE---ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT-MSD  221 (369)
Q Consensus       146 p~i~~~~~~~~~~---~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D  221 (369)
                      |.+...|.++.+.   +|+.++|.|.+.|.|.|.|.|++++..+....       ..++..    ..+.|.|.++. .+|
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~-------~~~~~~----~~g~L~i~~~~~~~D   70 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTES-------DYRYSL----IDGNLIISNPSEVKD   70 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCC-------CceEEe----eCCeEEEccCCccCc
Confidence            4555566666553   57899999999999999999999987664211       112211    23578998875 699


Q ss_pred             CEEEEEEEEeCCceEE
Q psy12695        222 SGIYTCRAKNGAGEVF  237 (369)
Q Consensus       222 ~G~Y~C~a~n~~g~~~  237 (369)
                      +|.|.|.|.|..|...
T Consensus        71 ~G~Y~C~A~N~~G~~~   86 (94)
T cd05848          71 SGRYQCLATNSIGSIL   86 (94)
T ss_pred             CEEEEEEEEcCCCeEE
Confidence            9999999999999864

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.36  E-value=5.8e-12  Score=88.63  Aligned_cols=73  Identities=32%  Similarity=0.584  Sum_probs=55.5

Q ss_pred             EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEE--EEE
Q psy12695        163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF--TNI  240 (369)
Q Consensus       163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~--~~~  240 (369)
                      ++|.|.+.|.|.|.+.|++++..+....        .++.+  ....+.|.|.+++.+|+|.|.|.|.|..|...  +.+
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~--------~~~~~--~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~   70 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQ--------GNYSV--SSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNF   70 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCC--------ccEEE--eCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceE
Confidence            4799999999999999999987653211        12222  22346899999999999999999999999864  455


Q ss_pred             EEEEe
Q psy12695        241 SLNVI  245 (369)
Q Consensus       241 ~l~v~  245 (369)
                      +|.|.
T Consensus        71 ~l~v~   75 (77)
T cd05760          71 TLSII   75 (77)
T ss_pred             EEEEe
Confidence            56553

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.36  E-value=4.8e-12  Score=87.47  Aligned_cols=70  Identities=27%  Similarity=0.430  Sum_probs=56.9

Q ss_pred             EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEE
Q psy12695        163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL  242 (369)
Q Consensus       163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l  242 (369)
                      +.|.|.+.|.|.|.+.|++++..+...         .++    ....+.|.|.++..+|+|.|+|.|.|..|.....+.+
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~---------~~~----~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~   67 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEK---------NRT----KKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTF   67 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCC---------CEE----EcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEE
Confidence            468999999999999999998776431         111    1234689999999999999999999999998888777


Q ss_pred             EEe
Q psy12695        243 NVI  245 (369)
Q Consensus       243 ~v~  245 (369)
                      .+.
T Consensus        68 ~~~   70 (71)
T cd04976          68 TLV   70 (71)
T ss_pred             EEE
Confidence            664

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.36  E-value=6.2e-12  Score=89.32  Aligned_cols=82  Identities=18%  Similarity=0.326  Sum_probs=63.1

Q ss_pred             CeEEEEEEeeC--CCCCeEEEEeCCeEeeecccccccCCcceEEEE-eecceeeEEEcccCCCCCEEEEEEEEeCCceEE
Q psy12695        161 ENVTLSCRATG--SPVPKIKWIFKEKIIANISSGLANMNKRQYIIK-TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF  237 (369)
Q Consensus       161 ~~~~l~C~~~g--~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~  237 (369)
                      +++.|.|.+.+  .+.+.+.|++++..+.....      ..+|... .....+.|.|.+++..|+|.|+|.|.|..+...
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~------~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~   74 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKD------GDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLS   74 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCC------CccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceE
Confidence            46889999977  44778999999988752111      1123221 112356899999999999999999999999999


Q ss_pred             EEEEEEEeecC
Q psy12695        238 TNISLNVIKVE  248 (369)
Q Consensus       238 ~~~~l~v~~~~  248 (369)
                      +++.|.|..+|
T Consensus        75 a~a~L~V~~pP   85 (85)
T cd05853          75 AAADLIVRGPP   85 (85)
T ss_pred             EEEEEEEecCC
Confidence            99999998764

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.36  E-value=1.1e-11  Score=90.52  Aligned_cols=90  Identities=19%  Similarity=0.250  Sum_probs=61.8

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEE-eecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK-TINSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      ..++++.+|+++.|.|.+.|.|.|.+.|+++++.+........ ....++.+. .......|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~   82 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRA-LRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIF   82 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEE-EeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEE
Confidence            4688999999999999999999999999998865422111110 111233322 22235789999999999999999997


Q ss_pred             eCCceEEEEEEEE
Q psy12695        231 NGAGEVFTNISLN  243 (369)
Q Consensus       231 n~~g~~~~~~~l~  243 (369)
                      .. -...+.+.|.
T Consensus        83 t~-~~~~~~~~~~   94 (95)
T cd05882          83 TM-PVRTAKATVT   94 (95)
T ss_pred             ee-ccccEEEEEE
Confidence            72 2334444443

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.35  E-value=4.7e-12  Score=87.15  Aligned_cols=69  Identities=33%  Similarity=0.560  Sum_probs=55.4

Q ss_pred             EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEE
Q psy12695        163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL  242 (369)
Q Consensus       163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l  242 (369)
                      ++|.|.+.|.|.|.+.|+++++.+..          .++...   ..+.|.|.+++.+|+|.|+|.|.|..|.....+.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~----------~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   67 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPK----------GRAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASL   67 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCC----------CcEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEE
Confidence            46899999999999999998764421          122221   34579999999999999999999999999888887


Q ss_pred             EE
Q psy12695        243 NV  244 (369)
Q Consensus       243 ~v  244 (369)
                      .|
T Consensus        68 ~V   69 (69)
T cd05725          68 TV   69 (69)
T ss_pred             EC
Confidence            64

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.35  E-value=4.6e-12  Score=89.64  Aligned_cols=79  Identities=24%  Similarity=0.385  Sum_probs=62.7

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      |....+.+|+.+.|.|.+.|. .+.+.|++++..+...         .++.+    ....|.|.+++.+|+|.|+|.|.|
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~---------~~~~~----~~~~L~I~~~~~~DsG~Y~C~a~n   66 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGEN---------NRTRI----TGEEVQIKDAVPRDSGLYACVTSS   66 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCC---------ceEEE----eCCEEEECCCChhhCEEEEEEEeC
Confidence            456788999999999999986 5689999998766421         12222    134799999999999999999999


Q ss_pred             CCceEEEEEEEEE
Q psy12695        232 GAGEVFTNISLNV  244 (369)
Q Consensus       232 ~~g~~~~~~~l~v  244 (369)
                      ..|.....+.|+|
T Consensus        67 ~~g~~~~~~~v~V   79 (79)
T cd04973          67 PSGSDTTYFSVNV   79 (79)
T ss_pred             CCCcccEEEEEeC
Confidence            9998877777654

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.35  E-value=4.3e-12  Score=87.30  Aligned_cols=68  Identities=29%  Similarity=0.535  Sum_probs=54.8

Q ss_pred             EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEE
Q psy12695        163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL  242 (369)
Q Consensus       163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l  242 (369)
                      +.|.|.+.|.|.|.+.|++++..+...         .++.+   ...+.|.|.+++.+|+|.|.|.|.|..|..+..+.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~---------~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTES---------GKFHI---SPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCC---------CCEEE---CCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            468999999999999999988765421         12221   124689999999999999999999999998887766

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.35  E-value=9.8e-12  Score=87.86  Aligned_cols=77  Identities=22%  Similarity=0.436  Sum_probs=59.6

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeCCCCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695        149 RPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      ...|+++.+.+|+.+.|.|.+.|.|.| .|.|++++..+.. .              .....+.|.|..+  .|+|.|.|
T Consensus         2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~-~--------------~~~~~s~L~i~~~--~d~g~Y~C   64 (81)
T cd05749           2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD-P--------------PAPSPSVLNVPGL--NETSKFSC   64 (81)
T ss_pred             cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC-C--------------CCCCCCEEEEccc--cCCeEEEE
Confidence            345778999999999999999999999 7999999976642 0              0012357888877  47899999


Q ss_pred             EEEeCCceEEE-EEEE
Q psy12695        228 RAKNGAGEVFT-NISL  242 (369)
Q Consensus       228 ~a~n~~g~~~~-~~~l  242 (369)
                      .|+|..|.... .++|
T Consensus        65 ~A~N~~G~~~s~~a~~   80 (81)
T cd05749          65 EAHNAKGVTTSRTGTV   80 (81)
T ss_pred             EEEeccCcEEeeeEEe
Confidence            99999997543 4443

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.34  E-value=1e-11  Score=90.99  Aligned_cols=86  Identities=30%  Similarity=0.491  Sum_probs=62.5

Q ss_pred             CCccCCCCCeeeccC---CeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccC-CCC
Q psy12695        146 PNIRPITPDVTAEEN---ENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT-MSD  221 (369)
Q Consensus       146 p~i~~~~~~~~~~~G---~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D  221 (369)
                      |.+...|.++.+.+|   +.++|.|.+.|.|.|.++|++++..+.....       .++..    ..+.|.|.++. ..|
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~-------~~~~~----~~g~L~I~~~~~~~D   70 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPE-------SRYTL----VAGNLVINNPQKARD   70 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCC-------ceEEE----ECCeEEEccCCccCc
Confidence            445556677766555   6899999999999999999999977642111       12222    14578998865 699


Q ss_pred             CEEEEEEEEeCCceEEE-EEEE
Q psy12695        222 SGIYTCRAKNGAGEVFT-NISL  242 (369)
Q Consensus       222 ~G~Y~C~a~n~~g~~~~-~~~l  242 (369)
                      +|.|.|.|+|..|.... .+.|
T Consensus        71 ~G~Y~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          71 AGSYQCLAINRCGTVVSREANL   92 (94)
T ss_pred             CEEEEEEEEcCcCcEEEEEEEE
Confidence            99999999999998643 4544

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.34  E-value=1.2e-11  Score=90.24  Aligned_cols=86  Identities=21%  Similarity=0.445  Sum_probs=62.1

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC-eEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE-KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      ..|.+..+..|+.+.|.|.+.|.| +.+.|++++ ..+..        .............+.|.|.+++.+|+|.|+|.
T Consensus         5 v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~--------~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   75 (92)
T cd04977           5 IVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVT--------QQQISVVQNDDVRSTLTIYNANIEDAGIYKCV   75 (92)
T ss_pred             EecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEecc--------CCCEEEEeCCCCEEEEEEecCCcccCEEEEEE
Confidence            346778899999999999999997 499999844 33321        01112222223456899999999999999999


Q ss_pred             EEeCCce-EEEEEEEEE
Q psy12695        229 AKNGAGE-VFTNISLNV  244 (369)
Q Consensus       229 a~n~~g~-~~~~~~l~v  244 (369)
                      |.|..|. ..+++.|.|
T Consensus        76 A~N~~g~~~~~sv~l~~   92 (92)
T cd04977          76 ATDAKGTESEATVNLKI   92 (92)
T ss_pred             EEcCCCCcceeEEEEEC
Confidence            9999654 566666643

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.34  E-value=1.3e-11  Score=88.98  Aligned_cols=82  Identities=27%  Similarity=0.385  Sum_probs=63.5

Q ss_pred             CCCCeeeccCCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEE
Q psy12695        151 ITPDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA  229 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  229 (369)
                      .|.++.+.+|+++.|.|.+ .|.|.|.+.|++++..+...        ..++...   ..+.|.|.+++.+|+|.|.|.|
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~--------~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a   70 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD--------NERVRIV---DDGNLLIAEARKSDEGTYKCVA   70 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC--------CCCEEEc---cCCEEEEeECCcccCEEEEEEE
Confidence            3567889999999999998 79999999999998765431        1122111   2468999999999999999999


Q ss_pred             EeCCceE-EEEEEEE
Q psy12695        230 KNGAGEV-FTNISLN  243 (369)
Q Consensus       230 ~n~~g~~-~~~~~l~  243 (369)
                      .|..|.. +..+.|.
T Consensus        71 ~N~~G~~~s~~~~l~   85 (86)
T cd05724          71 TNMVGERESAAARLS   85 (86)
T ss_pred             EeccCceeeeeEEEE
Confidence            9999985 4445544

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.33  E-value=1.3e-11  Score=90.12  Aligned_cols=85  Identities=28%  Similarity=0.423  Sum_probs=61.2

Q ss_pred             CCccCCCCCeeecc---CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccC-CCC
Q psy12695        146 PNIRPITPDVTAEE---NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT-MSD  221 (369)
Q Consensus       146 p~i~~~~~~~~~~~---G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D  221 (369)
                      |.+...|.++.+.+   |..+.|.|.+.|.|.|.++|++++..+...        ..++.+    ..+.|.|.++. .+|
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~--------~~~~~~----~~g~L~I~~~~~~~D   69 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLT--------NDRYSM----VGGNLVINNPDKYKD   69 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCC--------CCeEEE----ECCEEEECcCCcCCC
Confidence            34444555555544   448999999999999999999998765321        112222    24689999985 699


Q ss_pred             CEEEEEEEEeCCceEEE-EEEE
Q psy12695        222 SGIYTCRAKNGAGEVFT-NISL  242 (369)
Q Consensus       222 ~G~Y~C~a~n~~g~~~~-~~~l  242 (369)
                      +|.|.|.|.|..|.... .++|
T Consensus        70 ~G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          70 AGRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             CEEEEEEEEeCcceEEEccEEE
Confidence            99999999999998643 4444

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.33  E-value=2.2e-11  Score=89.19  Aligned_cols=92  Identities=20%  Similarity=0.284  Sum_probs=63.9

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEE-eecceeeEEEcccCCCCCEEEEEEE
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK-TINSLSNLTIVAVTMSDSGIYTCRA  229 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a  229 (369)
                      .++++.+.+|+++.|.|.+.+.|.+.+.|++.++......... .....++.+. .......|.|.+++.+|+|.|.|.+
T Consensus         3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~-~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~   81 (95)
T cd07701           3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKK-ALRDNRIELVRASWHELSISISDVSLSDEGQYTCSL   81 (95)
T ss_pred             ccceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcc-cccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEe
Confidence            3578899999999999999999999999997654332211111 1122344432 2234578999999999999999999


Q ss_pred             EeCCceEEEEEEEEE
Q psy12695        230 KNGAGEVFTNISLNV  244 (369)
Q Consensus       230 ~n~~g~~~~~~~l~v  244 (369)
                      .+..+ ....+.|.|
T Consensus        82 ~t~~~-~~~~~~l~v   95 (95)
T cd07701          82 FTMPV-KTSKAYLTV   95 (95)
T ss_pred             EeecC-ccEEEEEEC
Confidence            87533 355555543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.33  E-value=1.1e-11  Score=86.81  Aligned_cols=75  Identities=25%  Similarity=0.374  Sum_probs=55.4

Q ss_pred             EEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEEE
Q psy12695        165 LSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLN  243 (369)
Q Consensus       165 l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~  243 (369)
                      +.|.+.|.|.|.|+|++++..+........    ...........+.|.|.++..+|+|.|+|.|+|..|...+++.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~----~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICT----KIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceee----eeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            689999999999999999987753211000    000011112346899999999999999999999999988887764

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.33  E-value=7.2e-12  Score=86.78  Aligned_cols=70  Identities=34%  Similarity=0.487  Sum_probs=56.1

Q ss_pred             EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEE
Q psy12695        163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL  242 (369)
Q Consensus       163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l  242 (369)
                      +.|.|.+.|.|.|.+.|++++..+...          +.  ........|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~----------~~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   68 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPAD----------RT--KFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISV   68 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCC----------ce--eEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEE
Confidence            468999999999999999988654311          00  111234589999999999999999999999999988888


Q ss_pred             EE
Q psy12695        243 NV  244 (369)
Q Consensus       243 ~v  244 (369)
                      .|
T Consensus        69 ~V   70 (71)
T cd05731          69 TV   70 (71)
T ss_pred             EE
Confidence            76

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.32  E-value=1.5e-11  Score=85.95  Aligned_cols=74  Identities=32%  Similarity=0.629  Sum_probs=57.4

Q ss_pred             CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy12695        160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN  239 (369)
Q Consensus       160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~  239 (369)
                      |+.+.|.|.+.|.|.|.+.|+++++......        .++..   ...+.|.|.++..+|+|.|.|.|.|..|..+..
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~--------~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   69 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNS--------SRTLV---YDNGTLDILITTVKDTGSFTCIASNAAGEATAT   69 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCC--------CeEEE---ecCCEEEEEECChhhCEEEEEEEECCCCeEEEE
Confidence            7899999999999999999998544332111        11111   124579999999999999999999999999888


Q ss_pred             EEEEE
Q psy12695        240 ISLNV  244 (369)
Q Consensus       240 ~~l~v  244 (369)
                      +.|.|
T Consensus        70 ~~l~v   74 (74)
T cd05764          70 VELHI   74 (74)
T ss_pred             EEEEC
Confidence            88764

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.32  E-value=1.9e-11  Score=86.59  Aligned_cols=75  Identities=19%  Similarity=0.253  Sum_probs=55.8

Q ss_pred             EEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEE---eecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEE
Q psy12695        164 TLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK---TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI  240 (369)
Q Consensus       164 ~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~  240 (369)
                      .+.|.+.|.|.|.|+|++++..+.......     ..+...   .....+.|.|.+++.+|+|.|+|.|.|..|...+.+
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~-----~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~   76 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIR-----TEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSI   76 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCcee-----EEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEE
Confidence            368999999999999999998775322100     000000   112356799999999999999999999999998887


Q ss_pred             EEE
Q psy12695        241 SLN  243 (369)
Q Consensus       241 ~l~  243 (369)
                      .+.
T Consensus        77 ~~~   79 (81)
T cd04971          77 SAH   79 (81)
T ss_pred             Eee
Confidence            765

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.32  E-value=2.8e-11  Score=88.30  Aligned_cols=90  Identities=29%  Similarity=0.439  Sum_probs=70.0

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCe-EEEEeCCeEeeecccccccCCcceEEEEee----cceeeEEEcccCCC
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPK-IKWIFKEKIIANISSGLANMNKRQYIIKTI----NSLSNLTIVAVTMS  220 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~  220 (369)
                      |+++.....+.+.+|+.++|.|.+.+.|+|. |.|.+.+..+.+.+.       .++.+...    ...+.|.|.++...
T Consensus         2 pP~i~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~-------~r~~I~~~~~~~g~~S~L~I~~~~~~   74 (98)
T cd05898           2 PPIISSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTS-------ERYTVERTSTGSGVLSTLTINNIMEA   74 (98)
T ss_pred             CCEEecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCC-------CCEEEEEEccCCCcEEEEEECCCccc
Confidence            5555677888899999999999998888875 899988775543221       24444332    35678999999887


Q ss_pred             C-CEEEEEEEEeCCceEEEEEEE
Q psy12695        221 D-SGIYTCRAKNGAGEVFTNISL  242 (369)
Q Consensus       221 D-~G~Y~C~a~n~~g~~~~~~~l  242 (369)
                      | .|.|.|.|.|.+|.....++|
T Consensus        75 d~~g~Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          75 DFQTHYNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             cCCcEEEEEEEeCCccceEEEEe
Confidence            7 789999999999999888776

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.31  E-value=1.4e-11  Score=87.71  Aligned_cols=78  Identities=27%  Similarity=0.546  Sum_probs=57.7

Q ss_pred             CCeEEEEEEeeCCCCCeEEEEeCCe--E-eeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceE
Q psy12695        160 NENVTLSCRATGSPVPKIKWIFKEK--I-IANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV  236 (369)
Q Consensus       160 G~~~~l~C~~~g~p~p~i~W~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~  236 (369)
                      |+.+.|.|.+.|.|.|.+.|++++.  . ...... .   ...++.   ....+.|.|.+++.+|+|.|.|.|.|..|..
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~-~---~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   73 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPN-H---VRGNVV---VTNIGQLVIYNAQPQDAGLYTCTARNSGGLL   73 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCC-c---ccCCEE---EccccEEEEccCCcccCEEEEEEEecCCceE
Confidence            7899999999999999999999742  1 110000 0   001111   1234689999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy12695        237 FTNISLNV  244 (369)
Q Consensus       237 ~~~~~l~v  244 (369)
                      ...+.|.|
T Consensus        74 ~~~~~l~v   81 (81)
T cd05765          74 RANFPLSV   81 (81)
T ss_pred             EEEEEEeC
Confidence            99888865

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.31  E-value=1.9e-11  Score=89.92  Aligned_cols=85  Identities=29%  Similarity=0.484  Sum_probs=62.9

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEccc-----CCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV-----TMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-----~~~D~G~  224 (369)
                      ..|.+..+.+|+++.|.|.+.|.|.|.+.|++++..+......       ++..   ...+.+.|.++     ...|+|.
T Consensus         4 ~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~-------~~~~---~~~~~l~i~~v~~~~~~~~D~G~   73 (95)
T cd05722           4 SEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDE-------RRQQ---LPNGSLLITSVVHSKHNKPDEGF   73 (95)
T ss_pred             ECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCc-------ceEE---ccCCeEEEeeeeccCCCCCcCEE
Confidence            4567788899999999999999999999999998776532211       1111   12345666665     6899999


Q ss_pred             EEEEEEeC-CceE-EEEEEEEE
Q psy12695        225 YTCRAKNG-AGEV-FTNISLNV  244 (369)
Q Consensus       225 Y~C~a~n~-~g~~-~~~~~l~v  244 (369)
                      |.|.|.|. .|.. +..+.|.|
T Consensus        74 Y~C~a~N~~~G~~~s~~~~l~v   95 (95)
T cd05722          74 YQCVAQNDSLGSIVSRTARLTV   95 (95)
T ss_pred             EEEEEECCccCcEEEeeeEEeC
Confidence            99999999 9886 55666654

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.30  E-value=1.5e-11  Score=85.78  Aligned_cols=72  Identities=31%  Similarity=0.425  Sum_probs=55.1

Q ss_pred             EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceE-EEEEE
Q psy12695        163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV-FTNIS  241 (369)
Q Consensus       163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~  241 (369)
                      ++|.|.+.|.|.|.|.|++++..+.....       .++..   ...+.|.|.+++.+|+|.|.|.|.|..|.. +..+.
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~-------~~~~~---~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~   70 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSN-------GRIKQ---LRSGALQIENSEESDQGKYECVATNSAGTRYSAPAN   70 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCC-------CCEEE---cCCcEEEECCCChhhCEEEEEEEECCCCceEcccEE
Confidence            46899999999999999999876542111       12222   234579999999999999999999999984 56666


Q ss_pred             EEE
Q psy12695        242 LNV  244 (369)
Q Consensus       242 l~v  244 (369)
                      |.|
T Consensus        71 l~v   73 (74)
T cd05738          71 LYV   73 (74)
T ss_pred             EEE
Confidence            665

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.29  E-value=2.7e-11  Score=85.09  Aligned_cols=74  Identities=38%  Similarity=0.530  Sum_probs=58.7

Q ss_pred             EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEE
Q psy12695        163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL  242 (369)
Q Consensus       163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l  242 (369)
                      +.|.|.+.|.|.|.+.|++++..+.....       .++..  ......|.|.+++.+|+|.|+|.+.|..|.....+.|
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~-------~~~~~--~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   71 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLS-------KQLTL--IANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSL   71 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCC-------ccEEE--eCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEE
Confidence            36899999999999999999876643211       12221  2234579999999999999999999999999999998


Q ss_pred             EEe
Q psy12695        243 NVI  245 (369)
Q Consensus       243 ~v~  245 (369)
                      .|.
T Consensus        72 ~V~   74 (76)
T cd05736          72 FVE   74 (76)
T ss_pred             EEE
Confidence            885

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.27  E-value=2e-11  Score=89.10  Aligned_cols=83  Identities=23%  Similarity=0.315  Sum_probs=63.8

Q ss_pred             CCeeeccCCeEEEEEEeeC-----CCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695        153 PDVTAEENENVTLSCRATG-----SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g-----~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      .+..+.+|+.+.|.|.+.|     .|.|.|.|++++..+....     ....++.    ...+.|.|.++..+|+|.|+|
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~-----~~~~r~~----~~~~~L~I~~~~~~DsG~Y~C   77 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPT-----EERSRMH----QQKDLLWFLPAALEDSGLYTC   77 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccc-----cccceee----ecCCeEEEccCCcccCeEEEE
Confidence            4667889999999999999     6889999999885432110     0111211    124689999999999999999


Q ss_pred             EEEeCCceEEEEEEEEE
Q psy12695        228 RAKNGAGEVFTNISLNV  244 (369)
Q Consensus       228 ~a~n~~g~~~~~~~l~v  244 (369)
                      .+.|..|.....+.|.|
T Consensus        78 ~~~N~~g~~~~~~~L~v   94 (94)
T cd05756          78 VVRNSTYCMKVSISLTV   94 (94)
T ss_pred             EEcCCCccEEEEEEEEC
Confidence            99999999888887764

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.27  E-value=2.4e-11  Score=87.11  Aligned_cols=81  Identities=27%  Similarity=0.412  Sum_probs=59.3

Q ss_pred             CCeEEEEEEeeCC--CCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEE
Q psy12695        160 NENVTLSCRATGS--PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF  237 (369)
Q Consensus       160 G~~~~l~C~~~g~--p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~  237 (369)
                      |+.+.|.|.+.|.  |.|.+.|.++++.........    ............+.|.|.+++.+|+|.|.|.|.|..|..+
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~----~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~   76 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMV----TRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQK   76 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEee----cccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceE
Confidence            7899999999999  888999998776442211100    0000011112356899999999999999999999999988


Q ss_pred             EEEEEEE
Q psy12695        238 TNISLNV  244 (369)
Q Consensus       238 ~~~~l~v  244 (369)
                      .+..|.|
T Consensus        77 ~s~~v~v   83 (84)
T cd05742          77 ESTKVNI   83 (84)
T ss_pred             EEEEEEE
Confidence            8888766

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.24  E-value=4.9e-12  Score=84.62  Aligned_cols=57  Identities=37%  Similarity=0.518  Sum_probs=50.3

Q ss_pred             CccEEEeecce---eChhhccCCcccCeeeccCCcccccCCcccccccccccccccccce
Q psy12695         67 GTQVLDLSDNF---LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI  123 (369)
Q Consensus        67 ~~~~L~l~~n~---i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l  123 (369)
                      .++.|+|++|+   |.+.+|.++++|+.|+|++|+|+.+++++|.++++|+.|+|++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            57888888888   4578899999999999999999999999999999999999999975

...

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.24  E-value=5.1e-11  Score=85.65  Aligned_cols=78  Identities=23%  Similarity=0.347  Sum_probs=62.9

Q ss_pred             CCCCCeeeccCCeEEEEEEeeC-CCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695        150 PITPDVTAEENENVTLSCRATG-SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      ..|..+.+.+|+.++|.|.+.+ .|.+.+.|++++..+..           +    .....+.|.|.+++.+|+|.|.|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~-----------~----~~~~~~~L~I~~v~~~DsG~Y~C~   70 (85)
T cd05754           6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS-----------R----AMDFNGILTIRNVQLSDAGTYVCT   70 (85)
T ss_pred             cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC-----------c----ccccCCEEEECCCCHHHCEEEEEE
Confidence            4567788999999999999974 78889999998854321           0    011246899999999999999999


Q ss_pred             EEeCCceEEEEEEE
Q psy12695        229 AKNGAGEVFTNISL  242 (369)
Q Consensus       229 a~n~~g~~~~~~~l  242 (369)
                      |.|..|...+.+.|
T Consensus        71 a~n~~g~~~~~~~l   84 (85)
T cd05754          71 GSNMLDTDEATATL   84 (85)
T ss_pred             EeccCCeEeEEEEE
Confidence            99999998887765

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.24  E-value=7.7e-11  Score=82.52  Aligned_cols=73  Identities=29%  Similarity=0.438  Sum_probs=54.9

Q ss_pred             EEEEEEeeC-CCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEE
Q psy12695        163 VTLSCRATG-SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNIS  241 (369)
Q Consensus       163 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~  241 (369)
                      +.|.|.+.| .|.|.+.|++++..+......      ..+.+......+.|.|.++..+|+|.|.|.|.|..|.....+.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~------~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKP------RNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCc------ceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            368999999 999999999998766432110      1111222234578999999999999999999999999777654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.23  E-value=5.1e-11  Score=81.90  Aligned_cols=69  Identities=25%  Similarity=0.377  Sum_probs=52.2

Q ss_pred             EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEE
Q psy12695        163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL  242 (369)
Q Consensus       163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l  242 (369)
                      ++|.|.+.|.|.|.+.|++++..+....        .++..    ....|.|.+++.+|+|.|+|.|.|..........+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~--------~~~~~----~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i   68 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKC--------SRYHV----DGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI   68 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCC--------cEEEe----CCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence            3689999999999999999997654211        12221    23479999999999999999999987665555444


Q ss_pred             E
Q psy12695        243 N  243 (369)
Q Consensus       243 ~  243 (369)
                      +
T Consensus        69 ~   69 (72)
T cd07702          69 T   69 (72)
T ss_pred             E
Confidence            3

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.22  E-value=1.5e-10  Score=82.80  Aligned_cols=81  Identities=25%  Similarity=0.455  Sum_probs=57.4

Q ss_pred             CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc--eEE
Q psy12695        160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG--EVF  237 (369)
Q Consensus       160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g--~~~  237 (369)
                      |++++|.|.+.|.|.+.+.|+++++.......     ...+.........+.|.|.+++.+|+|.|.|.|.|..+  ...
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-----~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~   75 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIP-----EVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAF   75 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCce-----EEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCccee
Confidence            78999999999999999999987753211000     00011111112356899999999999999999999876  567


Q ss_pred             EEEEEEEe
Q psy12695        238 TNISLNVI  245 (369)
Q Consensus       238 ~~~~l~v~  245 (369)
                      .++.|+|.
T Consensus        76 ~sv~i~V~   83 (84)
T cd05861          76 KKVNITVH   83 (84)
T ss_pred             EEEEEEEe
Confidence            77777764

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.21  E-value=2.4e-10  Score=83.95  Aligned_cols=92  Identities=22%  Similarity=0.330  Sum_probs=62.7

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEE-eecceeeEEEcccCCCCCEEEEEEE
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK-TINSLSNLTIVAVTMSDSGIYTCRA  229 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a  229 (369)
                      .++++.+.+|++++|.|.+.+.+.+.+.|++.++.......... ....++.+. .......|.|.+++.+|+|.|+|.+
T Consensus         3 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~   81 (95)
T cd05717           3 VTQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRA-LRDNRIQLVNFSANELSISISNVSLSDEGRYTCSL   81 (95)
T ss_pred             cCCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccc-cccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEE
Confidence            35778899999999999999988899999975543221111100 112344432 2234568999999999999999999


Q ss_pred             EeCCceEEEEEEEEE
Q psy12695        230 KNGAGEVFTNISLNV  244 (369)
Q Consensus       230 ~n~~g~~~~~~~l~v  244 (369)
                      .+... .++.+.|+|
T Consensus        82 ~~~~~-~~~~~~~~v   95 (95)
T cd05717          82 YTMPV-QTAKATVTV   95 (95)
T ss_pred             ecCCC-ceEEEEEEC
Confidence            87653 355555543

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.20  E-value=3.4e-10  Score=81.24  Aligned_cols=82  Identities=28%  Similarity=0.404  Sum_probs=62.9

Q ss_pred             eeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695        155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG  234 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g  234 (369)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+.....        ............|.|.++..+|+|.|.|.+.|..|
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~--------~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g   75 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHR--------IGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYG   75 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCc--------eeEEEccCcEEEEEEeECCcccCEEEEEEEEECCc
Confidence            4567899999999999999999999998876542111        00111122345799999999999999999999999


Q ss_pred             eEEEEEEEEE
Q psy12695        235 EVFTNISLNV  244 (369)
Q Consensus       235 ~~~~~~~l~v  244 (369)
                      ....++.|.|
T Consensus        76 ~~~~~~~l~v   85 (85)
T cd05729          76 SINHTYKVDV   85 (85)
T ss_pred             eEEEEEEEeC
Confidence            9888877754

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.20  E-value=5e-11  Score=83.72  Aligned_cols=65  Identities=28%  Similarity=0.494  Sum_probs=53.6

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEE
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYT  226 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  226 (369)
                      +...|....+.+|++++|.|.+.+.|.+ .+.|++++..+..                   ..+.|.|.++ .+|+|.|+
T Consensus         3 v~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-------------------~~~~l~i~~~-~~dsG~Y~   62 (78)
T cd05752           3 VSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-------------------TTNSYRIRAA-NNDSGEYR   62 (78)
T ss_pred             EEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-------------------cCCeEEEeec-ccCCEEeE
Confidence            3445777889999999999999998864 6999999976521                   2457899999 99999999


Q ss_pred             EEEEeC
Q psy12695        227 CRAKNG  232 (369)
Q Consensus       227 C~a~n~  232 (369)
                      |.|.|.
T Consensus        63 C~a~~~   68 (78)
T cd05752          63 CQTQGS   68 (78)
T ss_pred             EECCCC
Confidence            999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.19  E-value=1.2e-10  Score=82.47  Aligned_cols=78  Identities=29%  Similarity=0.389  Sum_probs=52.8

Q ss_pred             EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceE-EEEEE
Q psy12695        163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV-FTNIS  241 (369)
Q Consensus       163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~  241 (369)
                      ++|.|.+.|.|.|.+.|++.+.......... .....++.+   ...+.|.|.++..+|+|.|.|.|.|..|.. +..+.
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~-~~~~~r~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~   76 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHT-CCLAGRIQL---LSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMV   76 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccc-cccCCCEEE---ecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEE
Confidence            4789999999999999999754321100000 001122222   124689999999999999999999999985 55555


Q ss_pred             EEE
Q psy12695        242 LNV  244 (369)
Q Consensus       242 l~v  244 (369)
                      |.|
T Consensus        77 l~~   79 (79)
T cd05734          77 LTV   79 (79)
T ss_pred             EeC
Confidence            543

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.18  E-value=8.9e-11  Score=82.53  Aligned_cols=67  Identities=21%  Similarity=0.399  Sum_probs=49.6

Q ss_pred             EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCC----CCCEEEEEEEEeCCceEEE
Q psy12695        163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM----SDSGIYTCRAKNGAGEVFT  238 (369)
Q Consensus       163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~a~n~~g~~~~  238 (369)
                      ++|.|.+.|.|.|.++|++++..+.....       .+.  ......+.|.|.++..    +|+|.|.|.|.|..|....
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~-------~~~--~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKD-------PRV--TMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCC-------CCE--EEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            46899999999999999999876642111       111  1223457888888754    7899999999999998543

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.18  E-value=1.8e-10  Score=80.81  Aligned_cols=67  Identities=21%  Similarity=0.435  Sum_probs=48.5

Q ss_pred             EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCC----CCCEEEEEEEEeCCceEEE
Q psy12695        163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM----SDSGIYTCRAKNGAGEVFT  238 (369)
Q Consensus       163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~a~n~~g~~~~  238 (369)
                      +.|.|.+.|.|.|.|+|++++..+.....       .++.  .....+.|.|..+..    .|+|.|+|.|.|..|....
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~-------~~~~--~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKD-------PKVT--MKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCC-------CCEE--EeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            46899999999999999999876532111       1111  223356788877764    3789999999999998654

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.18  E-value=2.3e-10  Score=80.27  Aligned_cols=74  Identities=22%  Similarity=0.402  Sum_probs=53.9

Q ss_pred             EEEEEEeeC-CCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEE
Q psy12695        163 VTLSCRATG-SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNIS  241 (369)
Q Consensus       163 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~  241 (369)
                      +.|.|.+.+ .|.+.+.|++++..+.....     ...++........+.|.|.++..+|+|.|+|.|+|..|....++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~-----~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNK-----PDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCC-----CCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            368999864 67889999999876642111     111222222334578999999999999999999999998877654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.16  E-value=2.3e-10  Score=83.35  Aligned_cols=82  Identities=30%  Similarity=0.563  Sum_probs=59.2

Q ss_pred             CCccCCCCCeeec---cCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccC-CCC
Q psy12695        146 PNIRPITPDVTAE---ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT-MSD  221 (369)
Q Consensus       146 p~i~~~~~~~~~~---~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D  221 (369)
                      |.+...|.++.+.   .|+.+.|.|.+.|.|.|.++|++++..+.....       .++..    ..+.|.|.++. .+|
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~-------~~~~~----~~~~L~i~~~~~~~d   70 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPD-------SRYSL----VGGNLVISNPSKAKD   70 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCC-------CCEEE----ECCEEEEecCCccCC
Confidence            4455556666544   346799999999999999999999876632111       11211    24578998887 489


Q ss_pred             CEEEEEEEEeCCceEEE
Q psy12695        222 SGIYTCRAKNGAGEVFT  238 (369)
Q Consensus       222 ~G~Y~C~a~n~~g~~~~  238 (369)
                      +|.|+|.|.|..|....
T Consensus        71 ~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          71 AGRYQCLASNIVGTVLS   87 (91)
T ss_pred             CEEEEEEEEcCCCEEEe
Confidence            99999999999997543

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>KOG3513|consensus

Probab=99.15  E-value=1.3e-10  Score=114.76  Aligned_cols=99  Identities=31%  Similarity=0.553  Sum_probs=82.7

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .|.+...+++..+..|+++++.|.+.|.|.|.|+|++++..+......      .++.+    ..+.|.|.+++.+|+|.
T Consensus       331 ~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~------~~~~i----~~g~L~is~v~~~dsg~  400 (1051)
T KOG3513|consen  331 PPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERD------PRYKI----DDGTLIISNVQESDSGV  400 (1051)
T ss_pred             CchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCC------cceEE----eCCEEEEEecccccCeE
Confidence            578888899999999999999999999999999999999877632211      11222    36789999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeecCCcccC
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKVETAVAQ  253 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~  253 (369)
                      |.|.|+|..|...+.+.|.|....+....
T Consensus       401 YQC~A~Nk~G~i~anA~L~V~a~~P~f~~  429 (1051)
T KOG3513|consen  401 YQCIAENKYGTIYANAELKVLASAPVFPL  429 (1051)
T ss_pred             EEeeeecccceEeeeeEEEEEccCCCCCC
Confidence            99999999999999999999988554433

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.15  E-value=4.4e-10  Score=78.85  Aligned_cols=68  Identities=25%  Similarity=0.468  Sum_probs=48.7

Q ss_pred             EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCC----CCCEEEEEEEEeCCceEEE
Q psy12695        163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM----SDSGIYTCRAKNGAGEVFT  238 (369)
Q Consensus       163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~----~D~G~Y~C~a~n~~g~~~~  238 (369)
                      +.|.|.+.|.|.|.+.|++++..+.....       .++.+  ....+.|.|..+..    +|+|.|.|.|.|..|....
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~-------~~~~~--~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKD-------PRVSM--RRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCC-------CcEEE--eCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            46899999999999999999875431111       12221  22356888887642    4699999999999998654


Q ss_pred             E
Q psy12695        239 N  239 (369)
Q Consensus       239 ~  239 (369)
                      .
T Consensus        72 ~   72 (77)
T cd05875          72 N   72 (77)
T ss_pred             E
Confidence            3

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.10  E-value=5.8e-10  Score=80.86  Aligned_cols=85  Identities=24%  Similarity=0.489  Sum_probs=62.2

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      +..+.+.+|+.+.|.|.+.+ |.+.+.|++++..+.....     ...++..    ....|.|.+++.+|+|.|.|.|.+
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~-----~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~~   72 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEE-----PEERLLV----TEDGLLIRSVSPADAGVYTCQSVE   72 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccC-----cCceEEE----cCCCEEEccCCHHHCEEEEEEEec
Confidence            45678899999999999987 8889999999865432110     0112221    234699999999999999999987


Q ss_pred             CC-ceEEEEEEEEEee
Q psy12695        232 GA-GEVFTNISLNVIK  246 (369)
Q Consensus       232 ~~-g~~~~~~~l~v~~  246 (369)
                      .. +.....+.|.|..
T Consensus        73 ~~~~~~~~~~~l~V~~   88 (89)
T cd04979          73 HGFKQTLATYSLNVLE   88 (89)
T ss_pred             CccceeEeEEEEEEec
Confidence            65 4466677777753

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.07  E-value=6.1e-10  Score=80.83  Aligned_cols=82  Identities=18%  Similarity=0.258  Sum_probs=55.7

Q ss_pred             eeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccc-----cCCcceEEEEe---ecceeeEEEcccCCCCCEEEE
Q psy12695        155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLA-----NMNKRQYIIKT---INSLSNLTIVAVTMSDSGIYT  226 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~  226 (369)
                      +.+.+|++++|.|.+.+.+.+.+.|++.++..........     .....++....   ..+...|+|.+++.+|+|+|+
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            4678999999999999999999999976533211100000     00111222222   234567999999999999999


Q ss_pred             EEEEeCCceE
Q psy12695        227 CRAKNGAGEV  236 (369)
Q Consensus       227 C~a~n~~g~~  236 (369)
                      |.+.|..+..
T Consensus        82 C~v~~~~~~~   91 (94)
T cd07690          82 CEVEDKKEEV   91 (94)
T ss_pred             EEECCccceE
Confidence            9999987654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.06  E-value=1.6e-09  Score=77.21  Aligned_cols=69  Identities=22%  Similarity=0.465  Sum_probs=54.6

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      |.+..+..|+++.|.|.+.+ +.+.+.|++++..+....        .++.+    ..+.|.|.+++.+|+|.|+|.+.+
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~--------~r~~~----~~~~L~I~nv~~~DsG~Y~C~a~e   69 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPES--------AKYLL----YRDGLLIFNASEADAGRYQCLSVE   69 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCC--------ceEEE----ECCcEEEeCCCHHHCEEEEEEEEe
Confidence            56788999999999999864 678999999998765321        12222    245799999999999999999987


Q ss_pred             CC
Q psy12695        232 GA  233 (369)
Q Consensus       232 ~~  233 (369)
                      ..
T Consensus        70 ~~   71 (87)
T cd05873          70 KS   71 (87)
T ss_pred             cc
Confidence            64

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>KOG4237|consensus

Probab=99.03  E-value=5.2e-11  Score=104.92  Aligned_cols=110  Identities=25%  Similarity=0.380  Sum_probs=92.5

Q ss_pred             cCcCcCCCCCC----CeecccC----------CceEEEecCCCCCccCCCCCC---CccEEEeecce---eChhhccCCc
Q psy12695         28 CLQVFAECPST----CECKWKG----------GKETVLCKAKNFTTIPEQLDV---GTQVLDLSDNF---LDRYTFRKLI   87 (369)
Q Consensus        28 ~~~~~~~cp~~----C~c~~~~----------~~~~~~c~~~~l~~ip~~~~~---~~~~L~l~~n~---i~~~~f~~l~   87 (369)
                      ..+....|+..    =+|+..+          +...++...|+++.||+..+.   .++.||||+|+   |.++||.||.
T Consensus        36 ~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~  115 (498)
T KOG4237|consen   36 ACPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA  115 (498)
T ss_pred             cCCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH
Confidence            45677778761    2555443          235688999999999998764   58999999999   5699999999


Q ss_pred             ccCeeeccC-CcccccCCcccccccccccccccccceecccCCcccccCcC
Q psy12695         88 NLVELDLSY-NQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL  137 (369)
Q Consensus        88 ~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l  137 (369)
                      +|.+|-|-+ |+|+.||.++|.+|..|+.|.|.-|++.++..++|..++.+
T Consensus       116 ~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l  166 (498)
T KOG4237|consen  116 SLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSL  166 (498)
T ss_pred             hhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhc
Confidence            998887665 99999999999999999999999999999999999988886

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.02  E-value=9.5e-10  Score=78.35  Aligned_cols=74  Identities=31%  Similarity=0.419  Sum_probs=55.9

Q ss_pred             CCeeeccCCeEEEEEEee-CCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        153 PDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ....+.+|+.++|.|.+. +.+.+.+.|++++..+..                 ......|.|.+++.+|+|.|.|.+.+
T Consensus         7 p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~-----------------~~~~~~l~I~~~~~~dsG~Y~C~~~~   69 (83)
T cd05753           7 PSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY-----------------SHSNSNLSIPQATLSDSGSYHCSGII   69 (83)
T ss_pred             CcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc-----------------cCCCceEEECccCHHHCEEEEEEEEe
Confidence            344689999999999985 456678999998865431                 11245799999999999999999999


Q ss_pred             CCceE-EEEEEEE
Q psy12695        232 GAGEV-FTNISLN  243 (369)
Q Consensus       232 ~~g~~-~~~~~l~  243 (369)
                      ..|.. +..+.++
T Consensus        70 ~~~~~~s~~~~i~   82 (83)
T cd05753          70 GSYDYSSEPVSIT   82 (83)
T ss_pred             CCceecCCCEEEE
Confidence            98763 3334443

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.00  E-value=2.8e-09  Score=77.30  Aligned_cols=78  Identities=19%  Similarity=0.326  Sum_probs=59.4

Q ss_pred             CeeeccCCeEEEEEEeeC-----CCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695        154 DVTAEENENVTLSCRATG-----SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g-----~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      .+.+.+|..+.|.|...+     .|.|.+.|++++..+...        ..+ . .   ..+.|.|.++..+|+|.|+|.
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~--------~~~-~-~---~~~~L~I~~v~~~DsG~YtC~   70 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD--------RKR-F-V---KGSKLLIQNVTEEDAGNYTCK   70 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCC--------ccE-E-e---cCCEEEEeeCChhhCEEEEEE
Confidence            456889999999998753     257899999999776421        111 1 1   457899999999999999999


Q ss_pred             EEeCCceEEEEEEEEE
Q psy12695        229 AKNGAGEVFTNISLNV  244 (369)
Q Consensus       229 a~n~~g~~~~~~~l~v  244 (369)
                      +.|..+.....++..+
T Consensus        71 ~~n~~~~~~~~~t~t~   86 (92)
T cd05757          71 LTFTHNGKQYNVTRTI   86 (92)
T ss_pred             EEecCCCEEEEEEEEE
Confidence            9999888766655444

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>KOG3513|consensus

Probab=98.99  E-value=2.7e-09  Score=105.68  Aligned_cols=145  Identities=25%  Similarity=0.322  Sum_probs=105.8

Q ss_pred             ccccCCcccccccccccccccc-cceecccCC--cccccCcCccccccCC--------------------CCccCCCC--
Q psy12695         99 IQFVPSHILDSILELRELKLSG-NPIQKITHE--AFINVPKLNLEDFACS--------------------PNIRPITP--  153 (369)
Q Consensus        99 l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~--~f~~l~~l~~~~~~c~--------------------p~i~~~~~--  153 (369)
                      ....|.....|+.+-.-|...+ ++-..+..+  .|.++..-+...|+|.                    |.+...+-  
T Consensus       355 a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~  434 (1051)
T KOG3513|consen  355 ASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVER  434 (1051)
T ss_pred             ecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccce
Confidence            4566777777887777776322 122233333  4667777777778882                    44444443  


Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ...+..|.++.+.|...+.|.|.+.|.+.++.+.+         ..|+.+   ..++.|.|.+++.+|+|.|+|.|.|..
T Consensus       435 ~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~---------~~r~~i---~edGtL~I~n~t~~DaG~YtC~A~N~~  502 (1051)
T KOG3513|consen  435 KVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQ---------SGRIRI---LEDGTLEISNVTRSDAGKYTCVAENKL  502 (1051)
T ss_pred             EEEEEeCCeEEEeeccCCCCcceEEEEcCCccccc---------CceEEE---CCCCcEEecccCcccCcEEEEEEEccc
Confidence            34678899999999999999999999999874332         223332   246899999999999999999999999


Q ss_pred             ceEEEEEEEEEeecCCcccCCC
Q psy12695        234 GEVFTNISLNVIKVETAVAQPD  255 (369)
Q Consensus       234 g~~~~~~~l~v~~~~~~~~~~~  255 (369)
                      |.+...+.|.|...+.....+.
T Consensus       503 G~a~~~~~L~Vkd~tri~~~P~  524 (1051)
T KOG3513|consen  503 GKAESTGNLIVKDATRITLAPS  524 (1051)
T ss_pred             CccceEEEEEEecCceEEeccc
Confidence            9999999999998876655443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.98  E-value=3.2e-10  Score=75.73  Aligned_cols=57  Identities=35%  Similarity=0.547  Sum_probs=53.4

Q ss_pred             cccCeeeccCCcccccCCcccccccccccccccccceecccCCcccccCcCcccccc
Q psy12695         87 INLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus        87 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      ++|+.|+|++|+|+.|++++|.++++|+.|+|++|.|+.+++++|.++++|...++.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~   57 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLS   57 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEET
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCc
Confidence            579999999999999999999999999999999999999999999999998776654

...

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.98  E-value=1.5e-08  Score=73.53  Aligned_cols=79  Identities=20%  Similarity=0.304  Sum_probs=59.6

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEe-ecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT-INSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      .+++++.+|+++.|.|.+.+.....+.|++.+............ ...||.... ......|+|.+++.+|+|.|.|.+.
T Consensus         4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~-~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~   82 (95)
T cd05881           4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPL-KDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLY   82 (95)
T ss_pred             cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCcccc-CCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEE
Confidence            46789999999999999998877889999888655432222222 344555443 3455679999999999999999986


Q ss_pred             e
Q psy12695        231 N  231 (369)
Q Consensus       231 n  231 (369)
                      .
T Consensus        83 t   83 (95)
T cd05881          83 T   83 (95)
T ss_pred             c
Confidence            5

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.97  E-value=4.4e-09  Score=75.48  Aligned_cols=83  Identities=28%  Similarity=0.336  Sum_probs=57.4

Q ss_pred             CCeEEEEEEeeCCCCC--eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEE
Q psy12695        160 NENVTLSCRATGSPVP--KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF  237 (369)
Q Consensus       160 G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~  237 (369)
                      |+++.|.|.+.+.+.+  .+.|..+++.........   ..+..........+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~---~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~   77 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVS---ENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAK   77 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecc---cccccccccceeeeEEEEecCCcccCEEEEEEEeecceEec
Confidence            7899999999876644  679988776432110000   00000001122357899999999999999999999999888


Q ss_pred             EEEEEEEe
Q psy12695        238 TNISLNVI  245 (369)
Q Consensus       238 ~~~~l~v~  245 (369)
                      ....|.|.
T Consensus        78 ~~t~~~V~   85 (86)
T cd05862          78 NSTIVIVH   85 (86)
T ss_pred             ccEEEEEe
Confidence            88888775

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.93  E-value=7.5e-09  Score=75.02  Aligned_cols=85  Identities=26%  Similarity=0.448  Sum_probs=58.7

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE-eC
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK-NG  232 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~-n~  232 (369)
                      .+.+.+|+.+.|.|.. +.|.|.+.|++++........  . ....++..    ..+.|.|.+++.+|+|.|+|.+. |.
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~--~-~~~~r~~~----~~~~L~I~~~~~~DsG~Y~C~a~~~~   76 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEE--V-KTEERLIH----TERGLLLRSLQRSDAGVYTCTAVEHS   76 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCcccc--c-cccccEEE----ecCeEEEeeCChhHCEEEEEEEEccC
Confidence            3567899999999996 588899999985321110000  0 01112222    23569999999999999999998 56


Q ss_pred             CceEEEEEEEEEee
Q psy12695        233 AGEVFTNISLNVIK  246 (369)
Q Consensus       233 ~g~~~~~~~l~v~~  246 (369)
                      .+.....++|.|..
T Consensus        77 ~~~~~~~~~l~v~~   90 (91)
T cd05871          77 FSQTLAKYTLHVIE   90 (91)
T ss_pred             CeEEEEEEEEEEec
Confidence            67677788887753

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>smart00410 IG_like Immunoglobulin like

Probab=98.90  E-value=4.8e-08  Score=69.50  Aligned_cols=83  Identities=42%  Similarity=0.707  Sum_probs=63.2

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCCeEEEEeC-CeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        153 PDVTAEENENVTLSCRATGSPVPKIKWIFK-EKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+..         ..++..........|.|.++...|+|.|.|.+.+
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~---------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~   72 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAE---------SGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATN   72 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCC---------CCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEc
Confidence            456788999999999999888889999998 544431         1122222222256899999999999999999998


Q ss_pred             CCceEEEEEEEEE
Q psy12695        232 GAGEVFTNISLNV  244 (369)
Q Consensus       232 ~~g~~~~~~~l~v  244 (369)
                      ..+.....+.|.|
T Consensus        73 ~~~~~~~~~~l~V   85 (86)
T smart00410       73 SSGSASSTTTLTV   85 (86)
T ss_pred             CCCeEEEEEEEEE
Confidence            8888777766665

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.90  E-value=4.8e-08  Score=69.50  Aligned_cols=83  Identities=42%  Similarity=0.707  Sum_probs=63.2

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCCeEEEEeC-CeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        153 PDVTAEENENVTLSCRATGSPVPKIKWIFK-EKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+..         ..++..........|.|.++...|+|.|.|.+.+
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~---------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~   72 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAE---------SGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATN   72 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCC---------CCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEc
Confidence            456788999999999999888889999998 544431         1122222222256899999999999999999998


Q ss_pred             CCceEEEEEEEEE
Q psy12695        232 GAGEVFTNISLNV  244 (369)
Q Consensus       232 ~~g~~~~~~~l~v  244 (369)
                      ..+.....+.|.|
T Consensus        73 ~~~~~~~~~~l~V   85 (86)
T smart00409       73 SSGSASSTTTLTV   85 (86)
T ss_pred             CCCeEEEEEEEEE
Confidence            8888777766665

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.90  E-value=5.6e-09  Score=75.63  Aligned_cols=75  Identities=24%  Similarity=0.352  Sum_probs=56.7

Q ss_pred             CCeeeccCCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        153 PDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ....+.+|+.+.|.|.. .|.|.+.+.|++++....-.      ...+++   .....+.|.|.+|+.+|+|.|.|.|+|
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~------~d~r~~---~~~~~G~L~fs~v~~~D~g~Y~C~A~n   81 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIP------EDGRRF---VSQTNGNLYIAKVEASDRGNYSCFVSS   81 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccc------cCCCeE---EeCCCCcEEEeecCHhhCceeEEEEEe
Confidence            45678999999999987 78999999999987432110      112222   223468999999999999999999999


Q ss_pred             CCceE
Q psy12695        232 GAGEV  236 (369)
Q Consensus       232 ~~g~~  236 (369)
                      .....
T Consensus        82 ~~~~~   86 (96)
T cd05727          82 PSSTK   86 (96)
T ss_pred             cccCC
Confidence            87543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.89  E-value=1.2e-08  Score=72.06  Aligned_cols=71  Identities=38%  Similarity=0.696  Sum_probs=56.3

Q ss_pred             eeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695        155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG  234 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g  234 (369)
                      ..+.+|+.+.|.|.+.+.|.+.+.|++++..+...                   ...+.+..+..+|+|.|.|.+.+..+
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~y~C~~~~~~~   69 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS-------------------QNGLFIPNVSPEDSGNYTCRASNGSG   69 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE-------------------SSEEEESSEEGGGTEEEEEEEEETTE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee-------------------eeeeeeeeeccccCEEEEEEEEeCCC
Confidence            56889999999999999999999999988665421                   11277788999999999999999665


Q ss_pred             -eEEEEEEEEE
Q psy12695        235 -EVFTNISLNV  244 (369)
Q Consensus       235 -~~~~~~~l~v  244 (369)
                       ..+..+.|.|
T Consensus        70 ~~~s~~~~v~V   80 (80)
T PF13895_consen   70 SNTSTSVNVTV   80 (80)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CeEeeeEEeeC
Confidence             3556666654

...

>KOG4221|consensus

Probab=98.88  E-value=1.1e-08  Score=101.51  Aligned_cols=99  Identities=26%  Similarity=0.422  Sum_probs=78.6

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      |...|.+.++.+|+.+.|.|.+.|.|.|.|.|.+++..+.-.+        .++.   ..+.+.|.|.+++..|+|.|+|
T Consensus       240 fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds--------~riv---l~g~~slliS~a~~~dSg~YtC  308 (1381)
T KOG4221|consen  240 FLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS--------YRIV---LVGGSSLLISNATDDDSGKYTC  308 (1381)
T ss_pred             eecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc--------eEEE---EecccceEEeccccccCceEEE
Confidence            3445788899999999999999999999999999988775322        1222   2346789999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEeecCCcccCCCCc
Q psy12695        228 RAKNGAGEVFTNISLNVIKVETAVAQPDPV  257 (369)
Q Consensus       228 ~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~  257 (369)
                      .|+|..-...+.+.|+|..+|.+...+...
T Consensus       309 ~Atn~~D~idasaev~V~a~P~~~~~p~~l  338 (1381)
T KOG4221|consen  309 RATNTNDSIDASAEVTVLAPPGFTKAPTTL  338 (1381)
T ss_pred             EecCCCcccccceEEEEEcCCCCCCCCcce
Confidence            999977667777888888887666555443

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.87  E-value=1.5e-08  Score=67.64  Aligned_cols=63  Identities=48%  Similarity=0.778  Sum_probs=50.0

Q ss_pred             cCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695        159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG  234 (369)
Q Consensus       159 ~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g  234 (369)
                      +|+.+.|.|.+.+.|.+.+.|++++..+..  .       .    ........|.|.+++..|+|.|.|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~-------~----~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--S-------N----RLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC--C-------C----EEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            588999999999999999999998865541  0       0    1122356899999999999999999998765

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.81  E-value=2.1e-08  Score=72.50  Aligned_cols=73  Identities=22%  Similarity=0.330  Sum_probs=56.4

Q ss_pred             CCCeeeccCCeEEEEEE-eeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE-EEEEEE
Q psy12695        152 TPDVTAEENENVTLSCR-ATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG-IYTCRA  229 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~-~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a  229 (369)
                      .+.+.+.+|+.+.|.|. ..|.|.|.|.|++++.....        ...+..+   ...+.|.|.+++.+|+| .|.|.|
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~--------~~~Ri~~---~~~GnL~fs~v~~~D~g~~Y~C~a   78 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHIT--------QDERVSM---GQNGNLYFANVEEQDSHPDYICHA   78 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcccc--------ccccEEE---CCCceEEEEEEehhhCCCCeEEEE
Confidence            36788999999999998 59999999999976543321        1223222   23589999999999999 799999


Q ss_pred             EeCCce
Q psy12695        230 KNGAGE  235 (369)
Q Consensus       230 ~n~~g~  235 (369)
                      .|....
T Consensus        79 ~~~~~~   84 (95)
T cd05845          79 HFPGLR   84 (95)
T ss_pred             Eccccc
Confidence            998643

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.78  E-value=1e-07  Score=69.15  Aligned_cols=89  Identities=18%  Similarity=0.329  Sum_probs=67.6

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCCe-EEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        153 PDVTAEENENVTLSCRATGSPVPK-IKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ..+.|.+|+.+.|.|.+...|+|. +.|.+.+..+.+.+.........    ....-.+.|.+..++.+|.|.|+|.|.|
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~----~~~rY~S~L~L~Rlk~~E~G~YTf~a~N   86 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNE----SNNRYVSELHLTRLKGTEGGTYTFLVSN   86 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEecc----CceEEEEEEEEeecChhhCcEEEEEEEC
Confidence            457899999999999999999998 99999887654333211100000    0001247899999999999999999999


Q ss_pred             CCceEEEEEEEEEe
Q psy12695        232 GAGEVFTNISLNVI  245 (369)
Q Consensus       232 ~~g~~~~~~~l~v~  245 (369)
                      ..+..+.++.|.|.
T Consensus        87 ~~~~~s~tF~l~v~  100 (101)
T cd05860          87 SDASASVTFNVYVN  100 (101)
T ss_pred             CCCeEEEEEEEEEe
Confidence            99999988888764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.76  E-value=8.2e-08  Score=72.41  Aligned_cols=84  Identities=26%  Similarity=0.352  Sum_probs=58.2

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeE-----eeecccccccCCcceEEEEe--ecceeeEEEcccCCCCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKI-----IANISSGLANMNKRQYIIKT--INSLSNLTIVAVTMSDS  222 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~  222 (369)
                      ..+..+.+.+|++++|.|.+.+.+.+.+.|++....     +.............++.+..  ......|.|.+++.+|+
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds   82 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS   82 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence            346778999999999999998877888999985421     11111110011233444432  23567899999999999


Q ss_pred             EEEEEEEEeCC
Q psy12695        223 GIYTCRAKNGA  233 (369)
Q Consensus       223 G~Y~C~a~n~~  233 (369)
                      |.|.|.+.+..
T Consensus        83 G~Y~C~~~~~~   93 (109)
T cd04983          83 AVYFCALSESG   93 (109)
T ss_pred             EEEEEEEecCC
Confidence            99999998754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.73  E-value=7.6e-08  Score=72.69  Aligned_cols=83  Identities=20%  Similarity=0.330  Sum_probs=57.3

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCe-----Eeeecccccc----cCCcceEEEEeec-ceeeEEEcccCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK-----IIANISSGLA----NMNKRQYIIKTIN-SLSNLTIVAVTM  219 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~-----~~~~~~~~~~----~~~~~~~~~~~~~-~~~~L~I~~v~~  219 (369)
                      +.|..+.+.+|++++|.|.+.+ +.+.+.||+...     .+........    .....++...... ....|.|.+++.
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~   81 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP   81 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence            3567789999999999999988 677899998642     1111111000    1123455544332 457899999999


Q ss_pred             CCCEEEEEEEEeCC
Q psy12695        220 SDSGIYTCRAKNGA  233 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~  233 (369)
                      +|+|.|.|.+.+..
T Consensus        82 ~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          82 EDSAVYLCASSLGG   95 (110)
T ss_pred             hhCEEEEEEeeCCC
Confidence            99999999998754

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.73  E-value=9.5e-08  Score=71.63  Aligned_cols=84  Identities=20%  Similarity=0.302  Sum_probs=57.2

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeCCC-CCeEEEEeCCe-----EeeecccccccCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        149 RPITPDVTAEENENVTLSCRATGSP-VPKIKWIFKEK-----IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g~p-~p~i~W~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      ...|..+.+.+|++++|.|.+.+.. ...+.|++...     .+.............++..........|.|.+++.+|+
T Consensus         4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds   83 (106)
T cd04980           4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA   83 (106)
T ss_pred             EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence            3456778999999999999997665 56799998531     12211111111122355554444556899999999999


Q ss_pred             EEEEEEEEeC
Q psy12695        223 GIYTCRAKNG  232 (369)
Q Consensus       223 G~Y~C~a~n~  232 (369)
                      |.|.|.+.+.
T Consensus        84 g~Y~Ca~~~~   93 (106)
T cd04980          84 AVYYCQQYGT   93 (106)
T ss_pred             EEEEEEEeCC
Confidence            9999998654

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.72  E-value=2e-07  Score=69.93  Aligned_cols=88  Identities=26%  Similarity=0.416  Sum_probs=59.0

Q ss_pred             cCCeEEEEEEeeCCC------CCeEEEEeCC-----eE-eeecccccc---cCCcceEEE-EeecceeeEEEcccCCCCC
Q psy12695        159 ENENVTLSCRATGSP------VPKIKWIFKE-----KI-IANISSGLA---NMNKRQYII-KTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       159 ~G~~~~l~C~~~g~p------~p~i~W~~~~-----~~-~~~~~~~~~---~~~~~~~~~-~~~~~~~~L~I~~v~~~D~  222 (369)
                      .|++++|.|.+...+      .+.|.|++..     .. +........   ...+.+... ....+...|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999987653      4589999862     11 111111110   011112221 1234567999999999999


Q ss_pred             EEEEEEEEeCCceEEEEEEEEEee
Q psy12695        223 GIYTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       223 G~Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      |.|.|.+.+..+.....+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999999888888888888864

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.70  E-value=1.1e-07  Score=81.12  Aligned_cols=94  Identities=21%  Similarity=0.200  Sum_probs=63.2

Q ss_pred             CCeeeccCCeEEEEEEeeCCC-----------CCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCC
Q psy12695        153 PDVTAEENENVTLSCRATGSP-----------VPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD  221 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p-----------~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D  221 (369)
                      ..+.+.+|+++.|.|.+.+.|           .+.+.|++.+....-.....................+.|.|.+++.+|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            567889999999999987754           348999998754211000000000000000011235689999999999


Q ss_pred             CEEEEEEEEeCCceEEEEEEEEEee
Q psy12695        222 SGIYTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       222 ~G~Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      +|.|.|.|.|..|.....+.|.|..
T Consensus       110 sG~Y~C~a~N~~~~~~~~i~L~V~~  134 (227)
T PHA02826        110 EGIYICTISSGNICEESTIRLTFDS  134 (227)
T ss_pred             CEEEEEEEEECCcceEEEEEEEEec
Confidence            9999999999998888888888854

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.70  E-value=9.1e-08  Score=81.54  Aligned_cols=70  Identities=24%  Similarity=0.347  Sum_probs=53.5

Q ss_pred             CCeeeccCCeEEEEEEeeC-----CCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695        153 PDVTAEENENVTLSCRATG-----SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g-----~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      .+..+.+|+.+.|.|.+.+     .|.|.+.|++++..+....         ++.  ...+.+.|.|.+++.+|+|.|+|
T Consensus       137 ~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~---------r~~--~~~~~~~L~I~~V~~~DsG~YtC  205 (227)
T PHA02826        137 INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTD---------RIQ--LRNNNSTLVIKSATHDDSGIYTC  205 (227)
T ss_pred             ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCC---------CEE--EeCCCCEEEECcCCHHhCEEEEE
Confidence            4456788999999999863     4678999999998764211         222  22345689999999999999999


Q ss_pred             EEEeCC
Q psy12695        228 RAKNGA  233 (369)
Q Consensus       228 ~a~n~~  233 (369)
                      .|....
T Consensus       206 ~a~~~~  211 (227)
T PHA02826        206 NLRFNK  211 (227)
T ss_pred             EEEEeE
Confidence            998764

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.70  E-value=4.9e-08  Score=65.80  Aligned_cols=61  Identities=34%  Similarity=0.516  Sum_probs=43.4

Q ss_pred             CCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecc--eeeEEEcccCCCCCEEEEEEE
Q psy12695        160 NENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS--LSNLTIVAVTMSDSGIYTCRA  229 (369)
Q Consensus       160 G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a  229 (369)
                      |+.++|.|.+ .+.+.+.+.|+++++........         .......  ...|.|.+++.+|+|.|.|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~---------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTT---------NRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEE---------EEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCccee---------EeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 78888899999988654321110         0000000  113999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.67  E-value=3.5e-07  Score=68.57  Aligned_cols=88  Identities=22%  Similarity=0.359  Sum_probs=58.5

Q ss_pred             cCCeEEEEEEeeCCC------CCeEEEEeCCe----E-eeeccccc---c-cCCcceEEEEe-ecceeeEEEcccCCCCC
Q psy12695        159 ENENVTLSCRATGSP------VPKIKWIFKEK----I-IANISSGL---A-NMNKRQYIIKT-INSLSNLTIVAVTMSDS  222 (369)
Q Consensus       159 ~G~~~~l~C~~~g~p------~p~i~W~~~~~----~-~~~~~~~~---~-~~~~~~~~~~~-~~~~~~L~I~~v~~~D~  222 (369)
                      .|++++|.|.+...|      ...|.|++...    . ........   . ..-..++.+.. ..+...|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            489999999987653      34699998641    1 11111000   0 00112333321 13356899999999999


Q ss_pred             EEEEEEEEeCCceEEEEEEEEEee
Q psy12695        223 GIYTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       223 G~Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      |+|.|.+.+..+.....+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEEE
Confidence            999999999999888888888864

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.66  E-value=2.7e-07  Score=68.03  Aligned_cols=77  Identities=16%  Similarity=0.274  Sum_probs=53.1

Q ss_pred             eeccCCeEEEEEEeeCC--CCCeEEEEeCCe--E---eeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695        156 TAEENENVTLSCRATGS--PVPKIKWIFKEK--I---IANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       156 ~~~~G~~~~l~C~~~g~--p~p~i~W~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      .+.+|++++|.|.+.+.  ....+.|+++..  .   +.............++.+........|.|.+++.+|+|+|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            57899999999998765  456799998542  1   1211111111123466665555667899999999999999999


Q ss_pred             EEeC
Q psy12695        229 AKNG  232 (369)
Q Consensus       229 a~n~  232 (369)
                      +.+.
T Consensus        82 ~~~~   85 (98)
T cd04984          82 VWDS   85 (98)
T ss_pred             EccC
Confidence            8753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.66  E-value=2.5e-07  Score=64.55  Aligned_cols=66  Identities=20%  Similarity=0.348  Sum_probs=49.4

Q ss_pred             EEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCce
Q psy12695        163 VTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE  235 (369)
Q Consensus       163 ~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~  235 (369)
                      +.|+|.. .|.|++.|+||+++..+......  ......+.     ..+.|.+.....+|.+.|+|.|.|..+.
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~--~~~~~~~t-----~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQ--QENGKTVS-----VSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCccc--ccCCceEE-----EEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            6799998 57999999999999988543211  11222222     3568999888999999999999998865

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.66  E-value=2.6e-07  Score=69.97  Aligned_cols=84  Identities=20%  Similarity=0.334  Sum_probs=54.3

Q ss_pred             CCCeeeccCCeEEEEEEeeCCC----CCeEEEEeCCe------Eeeecccccc-------cCCcceEEEEeecceeeEEE
Q psy12695        152 TPDVTAEENENVTLSCRATGSP----VPKIKWIFKEK------IIANISSGLA-------NMNKRQYIIKTINSLSNLTI  214 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p----~p~i~W~~~~~------~~~~~~~~~~-------~~~~~~~~~~~~~~~~~L~I  214 (369)
                      +..+.+..|+.++|.|.+....    ...|.|.+...      .+.....+..       ..++..|......+..++.|
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I   84 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI   84 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence            5678899999999999997633    35799954211      1111111111       01111222223346678999


Q ss_pred             cccCCCCCEEEEEEEEeCCce
Q psy12695        215 VAVTMSDSGIYTCRAKNGAGE  235 (369)
Q Consensus       215 ~~v~~~D~G~Y~C~a~n~~g~  235 (369)
                      .+++.+|+|+|+|.+.|..+.
T Consensus        85 ~nv~~sD~G~Y~C~v~n~p~~  105 (116)
T cd05879          85 HNLDYTDNGTFTCDVKNPPDI  105 (116)
T ss_pred             ccCCcccCEEEEEEEEcCCCc
Confidence            999999999999999998754

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.64  E-value=1.9e-07  Score=84.63  Aligned_cols=82  Identities=20%  Similarity=0.248  Sum_probs=58.4

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCCC---eEEEEeCCeEeeecccccccCCcceEEEEe--------ecceeeEEEcccCC
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPVP---KIKWIFKEKIIANISSGLANMNKRQYIIKT--------INSLSNLTIVAVTM  219 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~p---~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~L~I~~v~~  219 (369)
                      .|..+.+..|+.++|.|.+.|.|.+   .+.|++++..+.......    ..++....        ....+.|.|.+++.
T Consensus       226 ~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~  301 (326)
T PHA02785        226 LPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDG----DGRISVANKIYTTDKRRVITSRLNINPVKE  301 (326)
T ss_pred             CCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCC----ceeEEEecCccccccceeeeEEEEECCcch
Confidence            3567778889999999999998874   799999998664321100    01111100        01246899999999


Q ss_pred             CCCEEEEEEEEeCCceE
Q psy12695        220 SDSGIYTCRAKNGAGEV  236 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~g~~  236 (369)
                      +|+|.|+|.|.|..|..
T Consensus       302 ~D~G~Y~C~A~n~~~~~  318 (326)
T PHA02785        302 EDATTFTCMAFTIPSIS  318 (326)
T ss_pred             hcCeeeEEEEEeccCce
Confidence            99999999999988543

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.61  E-value=5.8e-07  Score=67.54  Aligned_cols=88  Identities=22%  Similarity=0.419  Sum_probs=58.3

Q ss_pred             cCCeEEEEEEeeCCC------------CCeEEEEeCCe----Eeeecccccc---cCCcceEEEEe---ecceeeEEEcc
Q psy12695        159 ENENVTLSCRATGSP------------VPKIKWIFKEK----IIANISSGLA---NMNKRQYIIKT---INSLSNLTIVA  216 (369)
Q Consensus       159 ~G~~~~l~C~~~g~p------------~p~i~W~~~~~----~~~~~~~~~~---~~~~~~~~~~~---~~~~~~L~I~~  216 (369)
                      .|++++|.|......            .+.|.|++...    .+........   ..-..|+.+..   ..+...|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999996543            45899998531    1111111110   00112444432   34678999999


Q ss_pred             cCCCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy12695        217 VTMSDSGIYTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       217 v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      ++.+|+|+|.|.+.+.....+..+.|.|..
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            999999999999998877777777777753

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.59  E-value=3.8e-07  Score=67.03  Aligned_cols=87  Identities=16%  Similarity=0.250  Sum_probs=57.3

Q ss_pred             ccCCeEEEEEEeeC-CCCCeEEEEeCCeEeeeccc-----ccc-cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        158 EENENVTLSCRATG-SPVPKIKWIFKEKIIANISS-----GLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       158 ~~G~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      ..|++|+|.|.... .....+.|++..........     ... ........+........|.|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            47999999998855 55567999997543332111     110 111111122334456889999999999999999998


Q ss_pred             eCCceE-EEEEEEEE
Q psy12695        231 NGAGEV-FTNISLNV  244 (369)
Q Consensus       231 n~~g~~-~~~~~l~v  244 (369)
                      +..|.. ...+.|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            877663 56677665

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.59  E-value=5.4e-07  Score=68.44  Aligned_cols=85  Identities=20%  Similarity=0.337  Sum_probs=53.5

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCC----CCeEEEEeC----Ce--EeeecccccccCCc----ceEEE--EeecceeeEEE
Q psy12695        151 ITPDVTAEENENVTLSCRATGSP----VPKIKWIFK----EK--IIANISSGLANMNK----RQYII--KTINSLSNLTI  214 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p----~p~i~W~~~----~~--~~~~~~~~~~~~~~----~~~~~--~~~~~~~~L~I  214 (369)
                      .+..+.+.+|++++|.|.....+    ...|.|++.    +.  .+............    .+...  ....+...|.|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I   83 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI   83 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence            45778899999999999986543    235999752    11  12111111110011    12211  12234668999


Q ss_pred             cccCCCCCEEEEEEEEeCCce
Q psy12695        215 VAVTMSDSGIYTCRAKNGAGE  235 (369)
Q Consensus       215 ~~v~~~D~G~Y~C~a~n~~g~  235 (369)
                      .+++.+|+|.|.|.+.|..+.
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          84 WQLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             eeCChhhCEEEEEEEEeCCCC
Confidence            999999999999999987653

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.58  E-value=3.8e-07  Score=69.56  Aligned_cols=82  Identities=27%  Similarity=0.382  Sum_probs=56.8

Q ss_pred             CCCCCeeeccCCeEEEEEEeeC--CCCCeEEEEeCC--e---Eeeecccccc-----cCCcceEEEEeec--ceeeEEEc
Q psy12695        150 PITPDVTAEENENVTLSCRATG--SPVPKIKWIFKE--K---IIANISSGLA-----NMNKRQYIIKTIN--SLSNLTIV  215 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g--~p~p~i~W~~~~--~---~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~L~I~  215 (369)
                      +.|..+.+.+|++++|.|.+.+  .+.+.+.|++..  .   .+........     .....++.+....  ....|.|.
T Consensus         3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   82 (116)
T cd04982           3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ   82 (116)
T ss_pred             CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence            3467788999999999999977  677889999853  1   1111111100     1123456555444  56789999


Q ss_pred             ccCCCCCEEEEEEEEe
Q psy12695        216 AVTMSDSGIYTCRAKN  231 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n  231 (369)
                      +++.+|+|.|.|.+..
T Consensus        83 ~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          83 NLEKEDSATYYCAYWE   98 (116)
T ss_pred             ECCHHHCEEEEEEEec
Confidence            9999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.57  E-value=9.2e-07  Score=65.20  Aligned_cols=84  Identities=20%  Similarity=0.306  Sum_probs=53.0

Q ss_pred             CeEEEEEEeeCCC---CCeEEEEeCCeE----eeec--ccccccCC--cceEEEEe-ecceeeEEEcccCCCCCEEEEEE
Q psy12695        161 ENVTLSCRATGSP---VPKIKWIFKEKI----IANI--SSGLANMN--KRQYIIKT-INSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       161 ~~~~l~C~~~g~p---~p~i~W~~~~~~----~~~~--~~~~~~~~--~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      ++++|.|...+.+   ...|.|++....    +...  ........  ..+..+.. ..+...|.|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4689999997654   346999986531    1101  00000001  11222111 11467899999999999999999


Q ss_pred             EEe-CCceEEEEEEEEE
Q psy12695        229 AKN-GAGEVFTNISLNV  244 (369)
Q Consensus       229 a~n-~~g~~~~~~~l~v  244 (369)
                      +.. ..|.....+.|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            875 6688888888876

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.56  E-value=6.1e-07  Score=66.43  Aligned_cols=85  Identities=19%  Similarity=0.275  Sum_probs=54.3

Q ss_pred             CCeEEEEEEeeCCC---CCeEEEEeCCeE--eeeccccccc------CCcceEEEE---eecceeeEEEcccCCCCCEEE
Q psy12695        160 NENVTLSCRATGSP---VPKIKWIFKEKI--IANISSGLAN------MNKRQYIIK---TINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       160 G~~~~l~C~~~g~p---~p~i~W~~~~~~--~~~~~~~~~~------~~~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |++++|.|...+..   ...+.|++....  +.........      .-..|+.+.   ...+...|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            78999999986332   236899986521  1111111000      001233221   123456899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEE
Q psy12695        226 TCRAKNGAGEVFTNISLNV  244 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v  244 (369)
                      .|.+.+..+.....+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999998888777777776

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.56  E-value=7.4e-07  Score=67.94  Aligned_cols=85  Identities=21%  Similarity=0.357  Sum_probs=53.2

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCC----CCeEEEEeCCe------Eeeecccccc-cCCc----ceEEE--EeecceeeEE
Q psy12695        151 ITPDVTAEENENVTLSCRATGSP----VPKIKWIFKEK------IIANISSGLA-NMNK----RQYII--KTINSLSNLT  213 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p----~p~i~W~~~~~------~~~~~~~~~~-~~~~----~~~~~--~~~~~~~~L~  213 (369)
                      .|..+.+.+|+.++|.|......    ...+.|++...      .+........ ....    .|..+  ....+...|.
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   83 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV   83 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence            46778899999999999986532    24599987431      1111111110 0001    12221  1223457899


Q ss_pred             EcccCCCCCEEEEEEEEeCCce
Q psy12695        214 IVAVTMSDSGIYTCRAKNGAGE  235 (369)
Q Consensus       214 I~~v~~~D~G~Y~C~a~n~~g~  235 (369)
                      |.+++.+|+|.|.|.+.|....
T Consensus        84 I~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          84 IHNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             EeeCCcccCEEEEEEEEeCCCC
Confidence            9999999999999999987643

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.55  E-value=5.3e-07  Score=65.39  Aligned_cols=76  Identities=17%  Similarity=0.333  Sum_probs=53.9

Q ss_pred             CeeeccCCeEEEEEEe-e----CCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695        154 DVTAEENENVTLSCRA-T----GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~-~----g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      .+.+.+|....|.|.- .    ..+.|.+.|+|++..+....        .++.  ...+...|.|.++..+|+|.|+|.
T Consensus         4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~--------~~~~--~~~~~~~L~I~~v~~~D~G~YtC~   73 (95)
T cd05897           4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDN--------EKFY--SLKGSTYLHIIDVSLNDSGYYTCK   73 (95)
T ss_pred             eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCC--------cceE--ecCCCCEEEEEEcChhhCEEEEEE
Confidence            3557789999999963 2    34677999999997764211        1111  112245799999999999999999


Q ss_pred             EEeCCceEEEE
Q psy12695        229 AKNGAGEVFTN  239 (369)
Q Consensus       229 a~n~~g~~~~~  239 (369)
                      +.+..|...-.
T Consensus        74 ~~~~~~g~~y~   84 (95)
T cd05897          74 LQFTHEGKKYN   84 (95)
T ss_pred             EEEeeCCEEEE
Confidence            99987665433

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.54  E-value=4.4e-07  Score=64.26  Aligned_cols=78  Identities=23%  Similarity=0.464  Sum_probs=55.6

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE-e
Q psy12695        153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK-N  231 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~-n  231 (369)
                      .+.++.+|+++.|.|...+. .+.+.|++++..+...         .++..    ....|.|..++.+|+|.|.|.+. +
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~---------~r~~~----~~~GLlI~~~~~~dsG~Y~C~s~E~   69 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQ---------FSYRV----GTDGLLILVTSPEHSGTYRCYSEEE   69 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCC---------cceEE----eCCCCEEEECCHhhCEEEEEEEecC
Confidence            46789999999999999776 5699999999876421         11111    13358899999999999999985 3


Q ss_pred             CCceEEEEEEEEE
Q psy12695        232 GAGEVFTNISLNV  244 (369)
Q Consensus       232 ~~g~~~~~~~l~v  244 (369)
                      .+...-..+.|.|
T Consensus        70 gf~~~~~~y~l~v   82 (85)
T cd05872          70 GFQQLVASYSLNV   82 (85)
T ss_pred             CCeEEEEEEEEEE
Confidence            3333444445544

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.54  E-value=1.4e-06  Score=65.55  Aligned_cols=88  Identities=25%  Similarity=0.401  Sum_probs=57.6

Q ss_pred             cCCeEEEEEEeeCCC----------CCeEEEEeCC--eE--eeecccccc---cCCcceEEEE---eecceeeEEEcccC
Q psy12695        159 ENENVTLSCRATGSP----------VPKIKWIFKE--KI--IANISSGLA---NMNKRQYIIK---TINSLSNLTIVAVT  218 (369)
Q Consensus       159 ~G~~~~l~C~~~g~p----------~p~i~W~~~~--~~--~~~~~~~~~---~~~~~~~~~~---~~~~~~~L~I~~v~  218 (369)
                      .|++++|.|.....+          ...|.|++..  +.  +........   ..-+.|+.+.   .......|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            389999999997644          2569999852  11  111111110   0011233331   22355789999999


Q ss_pred             CCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy12695        219 MSDSGIYTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       219 ~~D~G~Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      .+|+|+|.|.+..........+.|.|..
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999999999998777778888888764

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.54  E-value=6.4e-07  Score=65.25  Aligned_cols=85  Identities=18%  Similarity=0.217  Sum_probs=56.5

Q ss_pred             CeeeccCCeEEEEEEe-e----------CCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        154 DVTAEENENVTLSCRA-T----------GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~-~----------g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      ...+.+|+.+.|.|.. .          ......+.|+|++..........  +...|    .......|.|.++..+|+
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~--~~~~R----i~~~~~~Lwf~Pa~~eDS   82 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEII--FDGVR----MSKEEDSIWFRPAELQDS   82 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCccc--cccee----EEEeCCEEEEEeCChhhC
Confidence            3568899999999986 1          11233799999874333211111  11112    122356899999999999


Q ss_pred             EEEEEEEEeCCceEEEEEEEEE
Q psy12695        223 GIYTCRAKNGAGEVFTNISLNV  244 (369)
Q Consensus       223 G~Y~C~a~n~~g~~~~~~~l~v  244 (369)
                      |.|+|.+.|........+.|+|
T Consensus        83 G~Y~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          83 GLYTCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             eEEEEEECCCCcceEEEEEEEC
Confidence            9999999998866666665543

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.52  E-value=4.2e-08  Score=60.17  Aligned_cols=40  Identities=50%  Similarity=0.651  Sum_probs=32.4

Q ss_pred             cccCeeeccCCcccccCCcccccccccccccccccceeccc
Q psy12695         87 INLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT  127 (369)
Q Consensus        87 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~  127 (369)
                      ++|++|+|++|+|+.|++ .|..|++|+.|+|++|+|+.++
T Consensus         1 ~~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCCc
Confidence            468899999999999876 4788999999999999888765

...

>KOG0617|consensus

Probab=98.52  E-value=1.6e-08  Score=79.63  Aligned_cols=100  Identities=22%  Similarity=0.351  Sum_probs=75.2

Q ss_pred             ceEEEecCCCCCccCCCCC--CCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCcccccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQLD--VGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP  122 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~~--~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~  122 (369)
                      .+++..+.|.|+.+|+.+.  .++++|++++|+|+  +...+.|++|+.|+++.|++..+|.+ |+.++.|+.|||..|.
T Consensus        35 ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltynn  113 (264)
T KOG0617|consen   35 ITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYNN  113 (264)
T ss_pred             hhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhccccc
Confidence            4567888899999998884  57899999999987  56788899999999999999888775 8889999999998888


Q ss_pred             eec-ccCCcccccCc-----CccccccCCCC
Q psy12695        123 IQK-ITHEAFINVPK-----LNLEDFACSPN  147 (369)
Q Consensus       123 l~~-~~~~~f~~l~~-----l~~~~~~c~p~  147 (369)
                      +.. .-++.|-.+..     |..++|.-.|+
T Consensus       114 l~e~~lpgnff~m~tlralyl~dndfe~lp~  144 (264)
T KOG0617|consen  114 LNENSLPGNFFYMTTLRALYLGDNDFEILPP  144 (264)
T ss_pred             cccccCCcchhHHHHHHHHHhcCCCcccCCh
Confidence            764 22344443333     34455554443

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.52  E-value=1.4e-06  Score=64.42  Aligned_cols=83  Identities=24%  Similarity=0.362  Sum_probs=53.1

Q ss_pred             eEEEEEEeeCCC---CCeEEEEeCCe-----Eeee--cccccc----cCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695        162 NVTLSCRATGSP---VPKIKWIFKEK-----IIAN--ISSGLA----NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       162 ~~~l~C~~~g~p---~p~i~W~~~~~-----~~~~--~~~~~~----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      +++|.|.....+   ...|.|++...     .+..  ......    ..++.+|..........|.|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            688999986544   34799998431     1111  110111    112233333233456789999999999999999


Q ss_pred             EEEe-CCceEEEEEEEEE
Q psy12695        228 RAKN-GAGEVFTNISLNV  244 (369)
Q Consensus       228 ~a~n-~~g~~~~~~~l~v  244 (369)
                      .+.+ +.|..++.+.|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9987 6677777777776

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.52  E-value=2.3e-07  Score=64.39  Aligned_cols=73  Identities=41%  Similarity=0.591  Sum_probs=48.0

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCC-CCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSP-VPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p-~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |.|...+.......+. +.|.|.+.+.+ .+.+.|+ .......           ..........+.|.|.++..+|.|.
T Consensus         2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~-----------~~~~~~~~~~~~L~i~~v~~~~~g~   68 (75)
T PF13927_consen    2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFN-----------SNSRGSSSSNSTLTISNVTRSDNGT   68 (75)
T ss_dssp             SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEE-----------EEEEEEEEEEEEEEESSCCGGGTEE
T ss_pred             CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCcee-----------eeeeeccceeeEEEEccCCHHhCcE
Confidence            3444444444444444 99999999888 7789999 1111100           0011122346789999999999999


Q ss_pred             EEEEEEe
Q psy12695        225 YTCRAKN  231 (369)
Q Consensus       225 Y~C~a~n  231 (369)
                      |+|.|.|
T Consensus        69 y~C~a~N   75 (75)
T PF13927_consen   69 YTCIASN   75 (75)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            9999987

...

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.51  E-value=8.7e-07  Score=66.21  Aligned_cols=80  Identities=31%  Similarity=0.398  Sum_probs=54.0

Q ss_pred             eeeccCCeEEEEEEeeCC-CCCeEEEEeCCe-----Eeeeccccc---ccCCcceEEEEeec--ceeeEEEcccCCCCCE
Q psy12695        155 VTAEENENVTLSCRATGS-PVPKIKWIFKEK-----IIANISSGL---ANMNKRQYIIKTIN--SLSNLTIVAVTMSDSG  223 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~--~~~~L~I~~v~~~D~G  223 (369)
                      +++.+|++++|.|.+.+. +...+.|++...     .+.......   ......++.+....  ....|.|.+++.+|+|
T Consensus         1 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G   80 (105)
T cd00099           1 LSVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA   80 (105)
T ss_pred             CeecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence            357899999999999876 667899998543     111111110   01112344443332  5678999999999999


Q ss_pred             EEEEEEEeCCc
Q psy12695        224 IYTCRAKNGAG  234 (369)
Q Consensus       224 ~Y~C~a~n~~g  234 (369)
                      .|.|.+.+..+
T Consensus        81 ~Y~C~v~~~~~   91 (105)
T cd00099          81 VYYCAVSLSGG   91 (105)
T ss_pred             EEEEEEecCCC
Confidence            99999988765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.51  E-value=3.9e-08  Score=79.86  Aligned_cols=92  Identities=29%  Similarity=0.390  Sum_probs=31.6

Q ss_pred             eEEEecCCCCCccCCCCC---CCccEEEeecceeCh-hhccCCcccCeeeccCCcccccCCcccccccccccccccccce
Q psy12695         48 ETVLCKAKNFTTIPEQLD---VGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI  123 (369)
Q Consensus        48 ~~~~c~~~~l~~ip~~~~---~~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l  123 (369)
                      +.++..++.++.|.. +.   ..++.|+|++|.|.. ..|.+++.|+.|+|++|+|+.+.......+++|+.|+|++|+|
T Consensus        22 ~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I  100 (175)
T PF14580_consen   22 RELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKI  100 (175)
T ss_dssp             --------------S---TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS--
T ss_pred             ccccccccccccccc-hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcC
Confidence            457778888877753 32   367888888888763 3477788888888888888888654334678888888888888


Q ss_pred             ecccCC-cccccCcCccc
Q psy12695        124 QKITHE-AFINVPKLNLE  140 (369)
Q Consensus       124 ~~~~~~-~f~~l~~l~~~  140 (369)
                      ..+..- .+..+++|...
T Consensus       101 ~~l~~l~~L~~l~~L~~L  118 (175)
T PF14580_consen  101 SDLNELEPLSSLPKLRVL  118 (175)
T ss_dssp             -SCCCCGGGGG-TT--EE
T ss_pred             CChHHhHHHHcCCCccee
Confidence            876542 23345554443

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.49  E-value=7.1e-07  Score=64.93  Aligned_cols=81  Identities=21%  Similarity=0.226  Sum_probs=52.3

Q ss_pred             CCeEEEEEEeeCCCCCeEEEEeCCeEeeec-------ccccc--cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        160 NENVTLSCRATGSPVPKIKWIFKEKIIANI-------SSGLA--NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      |++|+|.|.........|.|++........       .....  ..-..++.+  . ..+.|.|.+++.+|+|.|.|.+.
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~--~-~~~sL~I~~l~~~DsG~Y~c~v~   77 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETI--Y-PNGSLLIQNLTKEDSGTYTLQII   77 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEE--c-CCceEEEccCCchhcEEEEEEEE
Confidence            789999999887666789999966332110       00000  011123322  2 23789999999999999999998


Q ss_pred             eCCce-EEEEEEEE
Q psy12695        231 NGAGE-VFTNISLN  243 (369)
Q Consensus       231 n~~g~-~~~~~~l~  243 (369)
                      ...|. ....+.|.
T Consensus        78 ~~~~~~~~~~~~l~   91 (92)
T cd05741          78 STNGVTENAKFFLR   91 (92)
T ss_pred             cCCCcEEEEEEEEE
Confidence            77644 44455554

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.47  E-value=1.1e-06  Score=62.44  Aligned_cols=76  Identities=25%  Similarity=0.462  Sum_probs=48.0

Q ss_pred             EEEEEEeeC-CCCCeEEEEeCCeEeeeccccccc-CCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCce--EEE
Q psy12695        163 VTLSCRATG-SPVPKIKWIFKEKIIANISSGLAN-MNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE--VFT  238 (369)
Q Consensus       163 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~--~~~  238 (369)
                      +.|.|.+.| .|.+.|.|++++..+......... .....+     ...+.|.|.....+|.|.|+|.|.|....  ...
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~-----~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~   76 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRE-----TTVSTLPITPSDHDTGRTFTCRARNEALPTGKET   76 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeE-----EEEEEEEEeCceecCCCEEEEEEcCccCCCCcEE
Confidence            679999987 688899999998766432110000 000111     12356888877778889999999987633  344


Q ss_pred             EEEEE
Q psy12695        239 NISLN  243 (369)
Q Consensus       239 ~~~l~  243 (369)
                      +++|.
T Consensus        77 s~~l~   81 (82)
T cd05759          77 SVTLD   81 (82)
T ss_pred             EEEEc
Confidence            44443

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.47  E-value=1.6e-06  Score=69.52  Aligned_cols=96  Identities=25%  Similarity=0.284  Sum_probs=67.2

Q ss_pred             CCeeeccCCeEEEEEEee-CCCCCeEEEEeCCeEeeeccccccc-CC--cceEE-EEeecceeeEEEcccCCCCCEEEEE
Q psy12695        153 PDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLAN-MN--KRQYI-IKTINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~-~~--~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      ..++|.+|+++.|.|... +...+.+.|++.++.+......... .+  ..++. +........|+|.+++.+|+|.|.|
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C  102 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC  102 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence            457789999999999984 6667889999975544322211110 11  12443 4445567899999999999999999


Q ss_pred             EEE-eCCc-eEEEEEEEEEeecC
Q psy12695        228 RAK-NGAG-EVFTNISLNVIKVE  248 (369)
Q Consensus       228 ~a~-n~~g-~~~~~~~l~v~~~~  248 (369)
                      ... -+.| ..+..+-|+|....
T Consensus       103 ~F~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987        103 IFNTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             EEEecCCCCCceeEEEEEEEchh
Confidence            974 4556 67778888887654

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.47  E-value=2.2e-06  Score=63.64  Aligned_cols=87  Identities=21%  Similarity=0.202  Sum_probs=55.1

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCe-----Eeeecccc-cc-c---CCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEK-----IIANISSG-LA-N---MNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~-----~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      ...+.+|+++.|.|.........+.|++...     .+...... .. .   .-+.|..   ...+++|.|.+++.+|+|
T Consensus         7 p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~---~~~ngSL~I~~v~~~D~G   83 (105)
T cd05774           7 PPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRET---IYPNGSLLIQNVTQKDTG   83 (105)
T ss_pred             CCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEE---EeCCCcEEEecCCcccCE
Confidence            4457899999999976544444899999632     22221111 00 0   0111222   123579999999999999


Q ss_pred             EEEEEEEeCC-ceEEEEEEEE
Q psy12695        224 IYTCRAKNGA-GEVFTNISLN  243 (369)
Q Consensus       224 ~Y~C~a~n~~-g~~~~~~~l~  243 (369)
                      .|.|.+.+.. ......+.|.
T Consensus        84 ~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          84 FYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             EEEEEEEeCCccEEEEEEEEE
Confidence            9999999877 4455555554

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.46  E-value=1.1e-07  Score=99.25  Aligned_cols=77  Identities=29%  Similarity=0.305  Sum_probs=52.5

Q ss_pred             CccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCcccccCcCcccccc
Q psy12695         67 GTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus        67 ~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      .++.|+|++|++.   +..|.++++|+.|+|++|++....+..|..+++|+.|+|++|.++...+..|..+++|...++.
T Consensus       476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  555 (968)
T PLN00113        476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS  555 (968)
T ss_pred             cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence            4666666666654   4566677777777777777776666667777777777777777777666677776666555443

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.41  E-value=1.4e-06  Score=78.97  Aligned_cols=81  Identities=32%  Similarity=0.443  Sum_probs=61.5

Q ss_pred             CeeeccCCeEEEEEEe-----eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695        154 DVTAEENENVTLSCRA-----TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~-----~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      ...+.+|+.+.+.|.+     .|.|.+.+.|+|++....           +..   .......|.|.++..+|+|.|+|.
T Consensus        35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~-----------~~~---~~~~g~~l~i~~~~~~DsG~Y~C~  100 (326)
T PHA02785         35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADND-----------RII---PIDNGSNMLILNPTQSDSGIYICI  100 (326)
T ss_pred             hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc-----------eEE---EccCCceEEEcccCcccCeEEEEE
Confidence            3456789999999997     689999999999874211           011   111233588999999999999999


Q ss_pred             EEeCCceEEEEEEEEEeecC
Q psy12695        229 AKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       229 a~n~~g~~~~~~~l~v~~~~  248 (369)
                      +.|..|.....+.|.|....
T Consensus       101 a~N~~g~~~~s~~L~V~~~~  120 (326)
T PHA02785        101 TKNETYCDMMSLNLTIVSVS  120 (326)
T ss_pred             EECCCcceEEEEEEEEEecC
Confidence            99999988888888886543

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.40  E-value=2.5e-06  Score=64.98  Aligned_cols=83  Identities=29%  Similarity=0.363  Sum_probs=55.8

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCC-CCCeEEEEeCCe--E---eeecccccccCCcceEEEEe--ecceeeEEEcccCCCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGS-PVPKIKWIFKEK--I---IANISSGLANMNKRQYIIKT--INSLSNLTIVAVTMSD  221 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~~--~---~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D  221 (369)
                      +.+..+.+.+|++++|.|...+. ....+.|++...  .   +...........+.++.+..  ......|.|.+++.+|
T Consensus         4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D   83 (116)
T cd07706           4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED   83 (116)
T ss_pred             EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence            45678889999999999998754 456799998531  1   11111111112234565542  3456789999999999


Q ss_pred             CEEEEEEEEeC
Q psy12695        222 SGIYTCRAKNG  232 (369)
Q Consensus       222 ~G~Y~C~a~n~  232 (369)
                      +|.|.|.+...
T Consensus        84 sg~Y~C~~~~~   94 (116)
T cd07706          84 SAKYFCALSTL   94 (116)
T ss_pred             CEEEEEEEECC
Confidence            99999998753

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>KOG0444|consensus

Probab=98.39  E-value=5.3e-08  Score=91.22  Aligned_cols=79  Identities=29%  Similarity=0.466  Sum_probs=67.2

Q ss_pred             CceEEEecCCCCCccCCCC--CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG  120 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  120 (369)
                      ..++++.+.|.|+++|..+  ..+.-+|+||+|+|+   ..-|.+|.-|-.||||+|+|..+|+. .+.|..|++|+|++
T Consensus       104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~  182 (1255)
T KOG0444|consen  104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSN  182 (1255)
T ss_pred             cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCC
Confidence            3578999999999999887  467888999999965   56789999999999999999999885 57888999999999


Q ss_pred             cceec
Q psy12695        121 NPIQK  125 (369)
Q Consensus       121 N~l~~  125 (369)
                      |+|..
T Consensus       183 NPL~h  187 (1255)
T KOG0444|consen  183 NPLNH  187 (1255)
T ss_pred             ChhhH
Confidence            98754

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.39  E-value=2.4e-06  Score=64.66  Aligned_cols=93  Identities=25%  Similarity=0.310  Sum_probs=58.9

Q ss_pred             CCCeeeccCCeEEEEEEee-CCCCCeEEEEeCCe-----Eee-eccc-c--c--c-cCCcceEEEEeecceeeEEEcccC
Q psy12695        152 TPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEK-----IIA-NISS-G--L--A-NMNKRQYIIKTINSLSNLTIVAVT  218 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~-g~p~p~i~W~~~~~-----~~~-~~~~-~--~--~-~~~~~~~~~~~~~~~~~L~I~~v~  218 (369)
                      +..+.+.+|+++.|.|... ......+.|++...     .+. .... .  .  . ..++..+..........|.|.+++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~   87 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ   87 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred             CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence            5678899999999999998 55666899998432     111 0000 0  0  0 111112222222346789999999


Q ss_pred             CCCCEEEEEEEEeCC-ceEEEEEEEEE
Q psy12695        219 MSDSGIYTCRAKNGA-GEVFTNISLNV  244 (369)
Q Consensus       219 ~~D~G~Y~C~a~n~~-g~~~~~~~l~v  244 (369)
                      .+|+|.|.|.+.... ......+.|.|
T Consensus        88 ~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   88 PSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             GGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             cCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            999999999998873 33444455544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.39  E-value=6.8e-06  Score=60.30  Aligned_cols=82  Identities=16%  Similarity=0.361  Sum_probs=52.3

Q ss_pred             eEEEEEEeeCC-CCC---eEEEEeCCe----Eeeecccc--c-c---cCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695        162 NVTLSCRATGS-PVP---KIKWIFKEK----IIANISSG--L-A---NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       162 ~~~l~C~~~g~-p~p---~i~W~~~~~----~~~~~~~~--~-~---~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      .++|.|..... |..   .|.|.+...    .+.-....  . .   ..++..+. ....+..+|.|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~-~~~~~daSi~i~nl~~~D~G~Y~C   80 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFK-NPSFEDGTISLSRLELEDEGVYIC   80 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEc-CCCCCcceEEEcCCccccCEEEEE
Confidence            57899999742 222   599987421    22111110  0 0   11111121 223456789999999999999999


Q ss_pred             EEEe-CCceEEEEEEEEE
Q psy12695        228 RAKN-GAGEVFTNISLNV  244 (369)
Q Consensus       228 ~a~n-~~g~~~~~~~l~v  244 (369)
                      .+.+ +.|..+..+.|.|
T Consensus        81 ~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          81 EFATFPTGNRESQLNLTV   98 (99)
T ss_pred             EEEeCCCCCeEEEEEEEE
Confidence            9999 6788888888877

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.38  E-value=3.5e-06  Score=61.95  Aligned_cols=85  Identities=28%  Similarity=0.359  Sum_probs=53.7

Q ss_pred             CCeEEEEEEeeCCCCC-eEEEEeCCe----Eeeec-c-cccc---cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEE
Q psy12695        160 NENVTLSCRATGSPVP-KIKWIFKEK----IIANI-S-SGLA---NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA  229 (369)
Q Consensus       160 G~~~~l~C~~~g~p~p-~i~W~~~~~----~~~~~-~-~~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  229 (369)
                      |++++|.|........ .|.|++...    .+... . ....   ....+.+..........|.|.+++.+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            7899999987554332 599998532    11111 1 0100   11112222223345678999999999999999998


Q ss_pred             E-eCCceEEEEEEEEE
Q psy12695        230 K-NGAGEVFTNISLNV  244 (369)
Q Consensus       230 ~-n~~g~~~~~~~l~v  244 (369)
                      . .+.|..+..+.|+|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            6 45677777788876

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.38  E-value=1.1e-06  Score=63.74  Aligned_cols=66  Identities=15%  Similarity=0.232  Sum_probs=49.1

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ...+.+|++|+|.|... .+...+.|+++|........            ........+.|.+++.+|+|.|+|...+.
T Consensus        10 ~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~------------~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          10 SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKP------------PEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCccCCCCcEEEEEecC-CCCCEEEEEECCCCcccccc------------CCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            45788999999999885 56678999998864321000            01123567999999999999999999876

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.35  E-value=7.8e-06  Score=61.18  Aligned_cols=87  Identities=23%  Similarity=0.345  Sum_probs=55.5

Q ss_pred             CCeEEEEEEeeCCC-------CCeEEEEeCC-----eEe-eec-ccccc---cCCcceEEEEe---ecceeeEEEcccCC
Q psy12695        160 NENVTLSCRATGSP-------VPKIKWIFKE-----KII-ANI-SSGLA---NMNKRQYIIKT---INSLSNLTIVAVTM  219 (369)
Q Consensus       160 G~~~~l~C~~~g~p-------~p~i~W~~~~-----~~~-~~~-~~~~~---~~~~~~~~~~~---~~~~~~L~I~~v~~  219 (369)
                      |+++.|.|...-.|       .+.|.|.+..     ... ... .....   ..-+.|..+..   ..+...|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            78999999976332       3689999752     111 111 11110   01112322221   12467999999999


Q ss_pred             CCCEEEEEEEEeCCceEEEEEEEEEee
Q psy12695        220 SDSGIYTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      +|+|.|.|.+.......+..+.|.|..
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            999999999999776677888887753

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>KOG4222|consensus

Probab=98.34  E-value=1e-06  Score=87.52  Aligned_cols=145  Identities=23%  Similarity=0.371  Sum_probs=101.9

Q ss_pred             ccCCcccccccccccccccccceecccCC---cccccCcCccccccC--------------------CCCccCCCCCeee
Q psy12695        101 FVPSHILDSILELRELKLSGNPIQKITHE---AFINVPKLNLEDFAC--------------------SPNIRPITPDVTA  157 (369)
Q Consensus       101 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~---~f~~l~~l~~~~~~c--------------------~p~i~~~~~~~~~  157 (369)
                      .+|.-...+.+.-+.|+...-++..+-.+   .+.+...-+.+.|.|                    .|.+...+.++.+
T Consensus       158 ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v  237 (1281)
T KOG4222|consen  158 GHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAV  237 (1281)
T ss_pred             CCCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCcccccccccee
Confidence            34444455555555555333333322221   233455556666776                    4667777889999


Q ss_pred             ccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEE
Q psy12695        158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF  237 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~  237 (369)
                      .+|..+.+.|.+.|.|.|.+.|.+.+..+..          .++.+  ..+..+|.|.+++..|+|.|.|.+.|..|...
T Consensus       238 ~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~----------~ry~i--~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~  305 (1281)
T KOG4222|consen  238 LVGAAAEFDCRVGGDPQPTVRWKKDDPSLPR----------SRYSI--LDDTQTLRIDRVTPTDEGTYVCPAENLVGGLE  305 (1281)
T ss_pred             ecccccccccccCCCCCCceeeeccCCCCCc----------cceee--eeccccccccccCCCcccceeeeccccccccc
Confidence            9999999999999999999999996654431          12222  22346899999999999999999999999999


Q ss_pred             EEEEEEEeecCCcccCCCCc
Q psy12695        238 TNISLNVIKVETAVAQPDPV  257 (369)
Q Consensus       238 ~~~~l~v~~~~~~~~~~~~~  257 (369)
                      +...++|..++.+...+...
T Consensus       306 asa~ltV~apP~f~kkp~dq  325 (1281)
T KOG4222|consen  306 ASATLTVQAPPSFGKKPRDQ  325 (1281)
T ss_pred             cccceEEecCcccccccCcc
Confidence            99999999988765554433

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.33  E-value=3.1e-06  Score=63.08  Aligned_cols=76  Identities=18%  Similarity=0.353  Sum_probs=51.9

Q ss_pred             eeccCCeEEEEEEeeCCCCCeEEEEeCCeE-------eeecccc-cc-----cCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        156 TAEENENVTLSCRATGSPVPKIKWIFKEKI-------IANISSG-LA-----NMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       156 ~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~-------~~~~~~~-~~-----~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      .+.+|++++|.|.+.+.....+.|+++...       +...... ..     .....++.+........|.|.+++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            467899999999986655567999986521       2111110 10     0113466665555677899999999999


Q ss_pred             EEEEEEEEe
Q psy12695        223 GIYTCRAKN  231 (369)
Q Consensus       223 G~Y~C~a~n  231 (369)
                      |+|.|.+.+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.32  E-value=1.4e-07  Score=76.74  Aligned_cols=87  Identities=30%  Similarity=0.312  Sum_probs=23.5

Q ss_pred             EecCCCCCccCCCC-CCCccEEEeecceeChh-hcc-CCcccCeeeccCCcccccCCcccccccccccccccccceeccc
Q psy12695         51 LCKAKNFTTIPEQL-DVGTQVLDLSDNFLDRY-TFR-KLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT  127 (369)
Q Consensus        51 ~c~~~~l~~ip~~~-~~~~~~L~l~~n~i~~~-~f~-~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~  127 (369)
                      ..+.+.+..+|... +..++.|+|.+|.|+.- .+. .+.+|+.|||++|.|+.|+.  |..++.|+.|+|++|+|+.+.
T Consensus         3 ~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~   80 (175)
T PF14580_consen    3 RLTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSIS   80 (175)
T ss_dssp             ---------------------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-C
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccc
Confidence            34455566677644 56789999999998742 333 57899999999999999964  788999999999999999997


Q ss_pred             CCcccccCcCcc
Q psy12695        128 HEAFINVPKLNL  139 (369)
Q Consensus       128 ~~~f~~l~~l~~  139 (369)
                      .+....++.|..
T Consensus        81 ~~l~~~lp~L~~   92 (175)
T PF14580_consen   81 EGLDKNLPNLQE   92 (175)
T ss_dssp             HHHHHH-TT--E
T ss_pred             cchHHhCCcCCE
Confidence            543345565544

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.31  E-value=1.1e-05  Score=56.51  Aligned_cols=77  Identities=19%  Similarity=0.341  Sum_probs=55.1

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        154 DVTAEENENVTLSCRATGSPVP--KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      .-.+..|++++|+|.....+.|  .|.|..+++.....               ...+...|.+..+...|+|+++|.++.
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~---------------~~~~~ktL~~~qv~~qdSG~WtC~V~~   72 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI---------------LNQDKKTLNLVQLGPNDSGTWDCIVSV   72 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee---------------ccCCccEEEeceeCcccCCEEEEEEEE
Confidence            4467899999999999654444  89999877553311               112356899999999999999999986


Q ss_pred             CCceEEEEEEEEEe
Q psy12695        232 GAGEVFTNISLNVI  245 (369)
Q Consensus       232 ~~g~~~~~~~l~v~  245 (369)
                      ..-.....+.+.|.
T Consensus        73 ~~k~~~~~~~V~Vl   86 (88)
T cd07694          73 NSSEKTLKLDIKVL   86 (88)
T ss_pred             CceEEEEEeeEEEE
Confidence            64444555555553

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>KOG4221|consensus

Probab=98.31  E-value=7.1e-07  Score=89.08  Aligned_cols=135  Identities=22%  Similarity=0.437  Sum_probs=98.4

Q ss_pred             ccCCcccccccccccccccccceecccCCc--ccccCcCccccccC-------------------CCCccCCCCCeeecc
Q psy12695        101 FVPSHILDSILELRELKLSGNPIQKITHEA--FINVPKLNLEDFAC-------------------SPNIRPITPDVTAEE  159 (369)
Q Consensus       101 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~--f~~l~~l~~~~~~c-------------------~p~i~~~~~~~~~~~  159 (369)
                      ++|.-.+.|+.+-+.+++.+-++..+--+.  ..+....+...|+|                   .|.+...|.++.+.+
T Consensus       263 ~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e  342 (1381)
T KOG4221|consen  263 GVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHE  342 (1381)
T ss_pred             CCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeee
Confidence            455556677777777777665554442222  22344445566666                   477888889999999


Q ss_pred             CCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEEE
Q psy12695        160 NENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN  239 (369)
Q Consensus       160 G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~  239 (369)
                      +.++.+.|.+.|.|.|.+.|++++..+.. +        ..+.+  . ..+.|+|..+-..|.|.|.|.+.|..|...+.
T Consensus       343 ~~die~ec~~~g~p~p~v~w~kNgd~~ip-s--------dy~ki--~-~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~  410 (1381)
T KOG4221|consen  343 SMDIEFECPVSGKPIPTVRWYKNGDRIIP-S--------DYFKI--V-GGGNLRILGIVKSDEGFYQCVAENDAGSAQAA  410 (1381)
T ss_pred             ccceeEeCCCCCCCcceEEEEecCcccCc-c--------cceEe--c-CCCCcEEEEEecccchhhhhhhccCcccccch
Confidence            99999999999999999999999977653 1        11211  1 22339999999999999999999999999999


Q ss_pred             EEEEEeec
Q psy12695        240 ISLNVIKV  247 (369)
Q Consensus       240 ~~l~v~~~  247 (369)
                      +.+.+...
T Consensus       411 a~l~vv~~  418 (1381)
T KOG4221|consen  411 AQLEVVPQ  418 (1381)
T ss_pred             hhheeccC
Confidence            88866544

>PLN03150 hypothetical protein; Provisional

Probab=98.30  E-value=8.5e-07  Score=87.44  Aligned_cols=58  Identities=31%  Similarity=0.402  Sum_probs=28.4

Q ss_pred             CccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccccccccccccccee
Q psy12695         67 GTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ  124 (369)
Q Consensus        67 ~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~  124 (369)
                      .++.|+|++|+|.   +..|.++++|+.|||++|+|+...+..|..+++|+.|+|++|.++
T Consensus       443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~  503 (623)
T PLN03150        443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS  503 (623)
T ss_pred             CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence            4455555555543   234455555555555555555433344455555555555555444

>PLN03150 hypothetical protein; Provisional

Probab=98.29  E-value=1.8e-06  Score=85.18  Aligned_cols=77  Identities=26%  Similarity=0.201  Sum_probs=66.5

Q ss_pred             CccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCcccccCcCcccccc
Q psy12695         67 GTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus        67 ~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      .++.|+|++|.+.   +..|..|++|+.|+|++|+|+...+..|..+.+|+.|+|++|.|+...+..|.++++|...++.
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4788999999975   5689999999999999999996556679999999999999999998777888888887776654

>KOG0618|consensus

Probab=98.29  E-value=6.2e-08  Score=94.40  Aligned_cols=66  Identities=32%  Similarity=0.489  Sum_probs=52.0

Q ss_pred             EEEeecceeChh---hccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCcccccCc
Q psy12695         70 VLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPK  136 (369)
Q Consensus        70 ~L~l~~n~i~~~---~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~  136 (369)
                      .|.|.+|.+...   .|.+..+|+.|+|++|+|..+|...+..+..|+.|+|+||+|+.++ .....+..
T Consensus       363 ~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~  431 (1081)
T KOG0618|consen  363 ELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGR  431 (1081)
T ss_pred             HHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhh
Confidence            344444445543   4568899999999999999999999999999999999999999988 44444444

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.27  E-value=5.6e-06  Score=63.36  Aligned_cols=82  Identities=16%  Similarity=0.169  Sum_probs=53.3

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCC------CCeEEEEeCCe-----Eeee-ccccc-c-cCCcceEEE--EeecceeeEEE
Q psy12695        151 ITPDVTAEENENVTLSCRATGSP------VPKIKWIFKEK-----IIAN-ISSGL-A-NMNKRQYII--KTINSLSNLTI  214 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p------~p~i~W~~~~~-----~~~~-~~~~~-~-~~~~~~~~~--~~~~~~~~L~I  214 (369)
                      .|..+.+.+|+.++|.|......      ...+.|+++..     .+.. ..... . ..-+.|+.+  ....+...|.|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            46778999999999999875322      24589998642     1111 11110 0 111235544  23455678999


Q ss_pred             cccCCCCCEEEEEEEEeC
Q psy12695        215 VAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       215 ~~v~~~D~G~Y~C~a~n~  232 (369)
                      .+++.+|+|+|.|.+...
T Consensus        85 ~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          85 SDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccCChhhCeEEEEEEEcC
Confidence            999999999999988654

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.27  E-value=6.5e-06  Score=61.71  Aligned_cols=76  Identities=28%  Similarity=0.398  Sum_probs=48.6

Q ss_pred             eeccCCeEEEEEEeeCCC-CCeEEEEeCCeE---------eeecccccc----cCCcceEEEEe--ecceeeEEEcccCC
Q psy12695        156 TAEENENVTLSCRATGSP-VPKIKWIFKEKI---------IANISSGLA----NMNKRQYIIKT--INSLSNLTIVAVTM  219 (369)
Q Consensus       156 ~~~~G~~~~l~C~~~g~p-~p~i~W~~~~~~---------~~~~~~~~~----~~~~~~~~~~~--~~~~~~L~I~~v~~  219 (369)
                      .+.+|++++|.|.+.+.. ...+.|+++...         +........    .....++.+..  ......|+|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            578999999999987643 457999985431         101111100    01123454422  23346799999999


Q ss_pred             CCCEEEEEEEEe
Q psy12695        220 SDSGIYTCRAKN  231 (369)
Q Consensus       220 ~D~G~Y~C~a~n  231 (369)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999853

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>KOG0444|consensus

Probab=98.26  E-value=1.5e-07  Score=88.22  Aligned_cols=83  Identities=28%  Similarity=0.436  Sum_probs=72.5

Q ss_pred             eEEEecCCCCC--ccCCCCC--CCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCccccccccccccccccc
Q psy12695         48 ETVLCKAKNFT--TIPEQLD--VGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN  121 (369)
Q Consensus        48 ~~~~c~~~~l~--~ip~~~~--~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N  121 (369)
                      +.+....|+|+  -||.++.  .++++||||+|++.  |..+..-+++-.|+||+|+|.+||...|.+|..|-+|||++|
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence            34666778887  5898886  57999999999976  566777788999999999999999999999999999999999


Q ss_pred             ceecccCCc
Q psy12695        122 PIQKITHEA  130 (369)
Q Consensus       122 ~l~~~~~~~  130 (369)
                      +|..+|+..
T Consensus       161 rLe~LPPQ~  169 (1255)
T KOG0444|consen  161 RLEMLPPQI  169 (1255)
T ss_pred             hhhhcCHHH
Confidence            999999853

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.24  E-value=2.4e-05  Score=58.76  Aligned_cols=39  Identities=33%  Similarity=0.578  Sum_probs=35.0

Q ss_pred             ceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy12695        208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       208 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      +...|.|.+++.+|+|.|.|.+.+........+.|.|..
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            567899999999999999999999988888888888764

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.22  E-value=1.1e-06  Score=87.37  Aligned_cols=84  Identities=25%  Similarity=0.314  Sum_probs=65.4

Q ss_pred             CeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeChhhccCCcccCeeeccCCcccccCCcccccccccccccc
Q psy12695         39 CECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKL  118 (369)
Q Consensus        39 C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  118 (369)
                      |.|... +...++|++++|+.+|..++..++.|+|++|+|..-- ..+++|++|+|++|+|+.||..    .++|+.|+|
T Consensus       196 ~~Cl~~-~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP-~lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~L  269 (788)
T PRK15387        196 RACLNN-GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLP-ALPPELRTLEVSGNQLTSLPVL----PPGLLELSI  269 (788)
T ss_pred             HHHhcC-CCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCC-CCCCCCcEEEecCCccCcccCc----ccccceeec
Confidence            455432 3568999999999999999999999999999987421 2468899999999999999752    356777777


Q ss_pred             cccceecccC
Q psy12695        119 SGNPIQKITH  128 (369)
Q Consensus       119 ~~N~l~~~~~  128 (369)
                      ++|.|+.++.
T Consensus       270 s~N~L~~Lp~  279 (788)
T PRK15387        270 FSNPLTHLPA  279 (788)
T ss_pred             cCCchhhhhh
Confidence            7777776653

>KOG4222|consensus

Probab=98.21  E-value=3e-06  Score=84.28  Aligned_cols=102  Identities=28%  Similarity=0.386  Sum_probs=78.8

Q ss_pred             cCCCCCeeeccCCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695        149 RPITPDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      ...+..+.+..|+.+.|.|.- .|.|.|.+.|.|++..+....      ...+    ..-..+.|.|.++..+|+|+|.|
T Consensus       135 rv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~------~~~~----~lisgG~LlIsnvrksD~GtY~C  204 (1281)
T KOG4222|consen  135 RVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYD------VPII----ALISGGNLLISNVRKSDEGTYAC  204 (1281)
T ss_pred             ccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccccc------ceeE----EEecCCcEEEeccccCCCceeee
Confidence            345667888999999999987 789999999999998765211      1111    11246789999999999999999


Q ss_pred             EEEeCCceE-EEEEEEEEeecCCcccCCCCceEe
Q psy12695        228 RAKNGAGEV-FTNISLNVIKVETAVAQPDPVYLV  260 (369)
Q Consensus       228 ~a~n~~g~~-~~~~~l~v~~~~~~~~~~~~~~~~  260 (369)
                      ++.|..|.. +..+.+.|...+.+...+....+.
T Consensus       205 VatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~  238 (1281)
T KOG4222|consen  205 VATNMVGERESIPARLSVQEKPWFWKRPKDLAVL  238 (1281)
T ss_pred             eecccccccccccceeeeccCCccccccccceee
Confidence            999999985 556899999998877666544433

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.20  E-value=1e-05  Score=59.53  Aligned_cols=79  Identities=18%  Similarity=0.237  Sum_probs=51.2

Q ss_pred             eeeccCCeEEEEEEeeC-CCCCeEEEEeCCeE----eeecccccccCCcceEEEE--eecceeeEEEcccCCCCCEEEEE
Q psy12695        155 VTAEENENVTLSCRATG-SPVPKIKWIFKEKI----IANISSGLANMNKRQYIIK--TINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      +.+.+|++++|.|.... .....+.|++....    +.............++.+.  ...+...|+|.+++.+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            46789999999999865 34567999986421    1111111111112344432  22455789999999999999999


Q ss_pred             EEEeCC
Q psy12695        228 RAKNGA  233 (369)
Q Consensus       228 ~a~n~~  233 (369)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            987654

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>KOG4579|consensus

Probab=98.19  E-value=1.4e-07  Score=71.64  Aligned_cols=85  Identities=19%  Similarity=0.302  Sum_probs=71.8

Q ss_pred             ceEEEecCCCCCccCCCC---CCCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCccccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQL---DVGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN  121 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~---~~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N  121 (369)
                      .+.++.++|+++.+|..+   |+.++.|+|++|.|.  |..|..++.|+.|+++.|.|...|.-.|. |.+|-.|+..+|
T Consensus        55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~-L~~l~~Lds~~n  133 (177)
T KOG4579|consen   55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAP-LIKLDMLDSPEN  133 (177)
T ss_pred             EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHH-HHhHHHhcCCCC
Confidence            456888999999999765   668899999999977  45699999999999999999988775554 889999999999


Q ss_pred             ceecccCCccc
Q psy12695        122 PIQKITHEAFI  132 (369)
Q Consensus       122 ~l~~~~~~~f~  132 (369)
                      .+..|+-+.|.
T Consensus       134 a~~eid~dl~~  144 (177)
T KOG4579|consen  134 ARAEIDVDLFY  144 (177)
T ss_pred             ccccCcHHHhc
Confidence            99988877654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.19  E-value=1.7e-06  Score=86.23  Aligned_cols=87  Identities=23%  Similarity=0.209  Sum_probs=63.6

Q ss_pred             ceEEEecCCCCCccCCCCCCCccEEEeecceeChhhccCCcccCeeeccCCcccccCCcccccccccccccccccceecc
Q psy12695         47 KETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI  126 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~  126 (369)
                      .+.+++++++|+.+|..+|..++.|+|++|+|..-.-.-..+|+.|+|++|+|+.||...+   .+|+.|+|++|.|..+
T Consensus       180 ~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~~L  256 (754)
T PRK15370        180 KTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLP---DTIQEMELSINRITEL  256 (754)
T ss_pred             ceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhh---ccccEEECcCCccCcC
Confidence            4678899999999999999999999999999763211122578888888888888876432   3577777777777777


Q ss_pred             cCCcccccCc
Q psy12695        127 THEAFINVPK  136 (369)
Q Consensus       127 ~~~~f~~l~~  136 (369)
                      +...+.+|..
T Consensus       257 P~~l~s~L~~  266 (754)
T PRK15370        257 PERLPSALQS  266 (754)
T ss_pred             ChhHhCCCCE
Confidence            6554444433

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.19  E-value=2.6e-05  Score=56.74  Aligned_cols=84  Identities=21%  Similarity=0.317  Sum_probs=52.8

Q ss_pred             CeEEEEEEeeCCC-CCeEEEEeCCe----Eeeeccc--c-ccc-CCcceEEE-EeecceeeEEEcccCCCCCEEEEEEE-
Q psy12695        161 ENVTLSCRATGSP-VPKIKWIFKEK----IIANISS--G-LAN-MNKRQYII-KTINSLSNLTIVAVTMSDSGIYTCRA-  229 (369)
Q Consensus       161 ~~~~l~C~~~g~p-~p~i~W~~~~~----~~~~~~~--~-~~~-~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a-  229 (369)
                      ++++|.|.....+ ...|.|.+...    .+.....  + ... .-..|... .......+|.|.+++.+|+|.|.|.+ 
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            4688999986433 34699987431    2221111  0 000 00112211 23345679999999999999999997 


Q ss_pred             EeCCceEEEEEEEEE
Q psy12695        230 KNGAGEVFTNISLNV  244 (369)
Q Consensus       230 ~n~~g~~~~~~~l~v  244 (369)
                      ..+.|+..+...|+|
T Consensus        81 tfP~G~~~~~~~l~~   95 (96)
T cd05887          81 TFPLGNTQSSTTVTV   95 (96)
T ss_pred             eCCCCCeeEEEEEEE
Confidence            557788888888877

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.18  E-value=1.8e-06  Score=52.85  Aligned_cols=38  Identities=34%  Similarity=0.386  Sum_probs=31.3

Q ss_pred             CccEEEeecceeC--hhhccCCcccCeeeccCCcccccCC
Q psy12695         67 GTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPS  104 (369)
Q Consensus        67 ~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~  104 (369)
                      ++++|+|++|+|.  +..|.+|++|+.|+|++|+|+.+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            5789999999987  3458999999999999999998754

...

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.15  E-value=2.2e-06  Score=89.72  Aligned_cols=66  Identities=24%  Similarity=0.229  Sum_probs=38.2

Q ss_pred             CccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCccc
Q psy12695         67 GTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFI  132 (369)
Q Consensus        67 ~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~  132 (369)
                      .+++|+|++|.+.   +..|.++++|+.|+|++|.+....+..|..+.+|+.|+|++|.+....+..|.
T Consensus       141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~  209 (968)
T PLN00113        141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG  209 (968)
T ss_pred             CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc
Confidence            3444444444432   34566677777777777776655555666666666666666665543333333

>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.14  E-value=1.8e-06  Score=47.03  Aligned_cols=28  Identities=36%  Similarity=0.897  Sum_probs=22.8

Q ss_pred             CCCCCCeecccCCceEEEecCCCCCccCCCCC
Q psy12695         34 ECPSTCECKWKGGKETVLCKAKNFTTIPEQLD   65 (369)
Q Consensus        34 ~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~   65 (369)
                      .||..|.|.    ...|+|++.+|++||.+||
T Consensus         1 ~CP~~C~C~----~~~V~C~~~~L~~vP~~lP   28 (28)
T PF01462_consen    1 ACPRPCTCS----GLTVDCSGRGLTAVPSDLP   28 (28)
T ss_dssp             SSETTSEEE----TTEEEETTSS-SSS-STS-
T ss_pred             CcCCCCEec----CCEeECCCCCCCccCCCCc
Confidence            599999999    5689999999999999886

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.13  E-value=1.6e-06  Score=86.37  Aligned_cols=82  Identities=22%  Similarity=0.269  Sum_probs=44.4

Q ss_pred             ceEEEecCCCCCccCCCCCCCccEEEeecceeChhhccCCcccCeeeccCCcccccCCcccccccccccccccccceecc
Q psy12695         47 KETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI  126 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~  126 (369)
                      ...+++++|+|+.+|..++.+++.|+|++|+|..-.-.-..+|+.|+|++|+|..||...+   .+|+.|+|++|.|+.+
T Consensus       201 L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~LP~~l~---s~L~~L~Ls~N~L~~L  277 (754)
T PRK15370        201 ITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLP---SALQSLDLFHNKISCL  277 (754)
T ss_pred             CcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhhccccEEECcCCccCcCChhHh---CCCCEEECcCCccCcc
Confidence            4456667777777776666667777777666542110011245555666665555554322   2455555555555555


Q ss_pred             cCCcc
Q psy12695        127 THEAF  131 (369)
Q Consensus       127 ~~~~f  131 (369)
                      +...+
T Consensus       278 P~~l~  282 (754)
T PRK15370        278 PENLP  282 (754)
T ss_pred             ccccC
Confidence            44333

>smart00013 LRRNT Leucine rich repeat N-terminal domain

Probab=98.12  E-value=3.4e-06  Score=48.08  Aligned_cols=32  Identities=31%  Similarity=0.787  Sum_probs=28.3

Q ss_pred             CCCCCCeecccCCceEEEecCCCCCccCCCCCCCcc
Q psy12695         34 ECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQ   69 (369)
Q Consensus        34 ~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~   69 (369)
                      .||..|.|.    ...|+|++.+|+.||.+||.+++
T Consensus         1 ~CP~~C~C~----~~~V~C~~~~L~~vP~~iP~~t~   32 (33)
T smart00013        1 ACPAPCNCS----GTAVDCSGRGLTEVPLDLPPDTT   32 (33)
T ss_pred             CcCCCCEEC----CCEeEeCCCCcCccCCCCCcccc
Confidence            499999998    46899999999999999997754

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.04  E-value=4.6e-05  Score=53.98  Aligned_cols=68  Identities=22%  Similarity=0.439  Sum_probs=41.8

Q ss_pred             EEEEEEeeC-CCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCce
Q psy12695        163 VTLSCRATG-SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE  235 (369)
Q Consensus       163 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~  235 (369)
                      +.|.|.+.| .|.+.|.|++++..+..............|.+     .+.|.+......+.+.|.|.|.+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~-----~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTV-----TSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEE-----EEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            579999966 58889999999987653221111111112222     345666444455556999999887643

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.02  E-value=5.2e-05  Score=57.75  Aligned_cols=81  Identities=22%  Similarity=0.345  Sum_probs=53.0

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCC--CCeEEEEeCCe--E---eeeccc--cc---ccCCcceEEEEeec--ceeeEEEcc
Q psy12695        151 ITPDVTAEENENVTLSCRATGSP--VPKIKWIFKEK--I---IANISS--GL---ANMNKRQYIIKTIN--SLSNLTIVA  216 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~~~--~---~~~~~~--~~---~~~~~~~~~~~~~~--~~~~L~I~~  216 (369)
                      .|..+.+.+|++++|.|...+..  ...+.||++..  .   +.....  ..   ......+|.+....  ....|+|.+
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS   82 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence            45678899999999999886543  45699998542  1   111110  00   01112356554333  345799999


Q ss_pred             cCCCCCEEEEEEEEe
Q psy12695        217 VTMSDSGIYTCRAKN  231 (369)
Q Consensus       217 v~~~D~G~Y~C~a~n  231 (369)
                      ++.+|+|+|.|.+..
T Consensus        83 ~~~~Dsa~YyCa~~~   97 (117)
T cd04981          83 LTPEDTAVYYCARGL   97 (117)
T ss_pred             CCHHHCEEEEEEEEc
Confidence            999999999998865

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.02  E-value=2.7e-05  Score=56.87  Aligned_cols=72  Identities=24%  Similarity=0.344  Sum_probs=49.0

Q ss_pred             ccCCeEEEEEEeeCC-CC-CeEEEEeCCeEeeeccc--ccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        158 EENENVTLSCRATGS-PV-PKIKWIFKEKIIANISS--GLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ..|+.++|.|.+.|. |. ..|+|++++..+.....  .........|.+     .+.|.+......|.|.|.|.|.+..
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~-----~s~l~v~~~~~~~~~~y~C~v~h~~   85 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSV-----SSQLTVSPSDWNSGDTYTCVVTHES   85 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEE-----EEEEEECHHHhCCCCCEEEEEEeCC
Confidence            478999999999997 53 57999999877653321  111122222222     4567776666679999999998876


Q ss_pred             c
Q psy12695        234 G  234 (369)
Q Consensus       234 g  234 (369)
                      .
T Consensus        86 ~   86 (95)
T cd00098          86 L   86 (95)
T ss_pred             C
Confidence            4

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.96  E-value=0.00012  Score=51.27  Aligned_cols=78  Identities=22%  Similarity=0.308  Sum_probs=47.5

Q ss_pred             EEEEEEee-CCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc-eEEEEE
Q psy12695        163 VTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG-EVFTNI  240 (369)
Q Consensus       163 ~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g-~~~~~~  240 (369)
                      +.|.|.+. +.|.+.|+|++++..+...... .......+     ...+.|.+..-..+|...|.|.|.|..- ......
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~-~~~~~~~~-----t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~   75 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTV-EETWSRMF-----TVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQR   75 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccc-eeccCCCc-----EEEEEEEEECchhhCCCEEEEEEcCcccCCceeeE
Confidence            67999995 5788899999999877542110 00011111     1245777754444445589999988652 245556


Q ss_pred             EEEEee
Q psy12695        241 SLNVIK  246 (369)
Q Consensus       241 ~l~v~~  246 (369)
                      .|.|..
T Consensus        76 ~L~V~y   81 (82)
T cd05883          76 YLEVQY   81 (82)
T ss_pred             EEEEEE
Confidence            666653

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>KOG0618|consensus

Probab=97.96  E-value=1.2e-06  Score=85.73  Aligned_cols=94  Identities=27%  Similarity=0.416  Sum_probs=77.4

Q ss_pred             eEEEecCCCCC--ccCCCC-CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccccccccccccc
Q psy12695         48 ETVLCKAKNFT--TIPEQL-DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN  121 (369)
Q Consensus        48 ~~~~c~~~~l~--~ip~~~-~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N  121 (369)
                      ..+.|.+|.|+  -+|.-. ...+++|+|++|+|.   ...|.+++.|++|+||+|+|+.|| .....+..|++|...+|
T Consensus       362 q~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN  440 (1081)
T KOG0618|consen  362 QELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSN  440 (1081)
T ss_pred             HHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCC
Confidence            45888999998  356422 467999999999855   667889999999999999999998 56788899999999999


Q ss_pred             ceecccCCcccccCcCccccccC
Q psy12695        122 PIQKITHEAFINVPKLNLEDFAC  144 (369)
Q Consensus       122 ~l~~~~~~~f~~l~~l~~~~~~c  144 (369)
                      .|..+|  -+..+++|...|+.|
T Consensus       441 ~l~~fP--e~~~l~qL~~lDlS~  461 (1081)
T KOG0618|consen  441 QLLSFP--ELAQLPQLKVLDLSC  461 (1081)
T ss_pred             ceeech--hhhhcCcceEEeccc
Confidence            999998  577777777766666

>KOG0617|consensus

Probab=97.94  E-value=1.4e-06  Score=68.80  Aligned_cols=90  Identities=19%  Similarity=0.237  Sum_probs=73.8

Q ss_pred             ceEEEecCCCCCccCCCCC--CCccEEEeecce--eChhhccCCcccCeeeccCCcccc-cCCccccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQLD--VGTQVLDLSDNF--LDRYTFRKLINLVELDLSYNQIQF-VPSHILDSILELRELKLSGN  121 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~~--~~~~~L~l~~n~--i~~~~f~~l~~L~~L~Ls~N~l~~-i~~~~f~~l~~L~~L~L~~N  121 (369)
                      ...+...+|++.++|..+.  .-++.|+++-|+  +-+.-|..++.|+.|||++|++++ .-++-|-.+..|+.|+|++|
T Consensus        58 levln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn  137 (264)
T KOG0617|consen   58 LEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN  137 (264)
T ss_pred             hhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC
Confidence            4568889999999998885  358899999999  458899999999999999999986 22445778999999999999


Q ss_pred             ceecccCCcccccCcC
Q psy12695        122 PIQKITHEAFINVPKL  137 (369)
Q Consensus       122 ~l~~~~~~~f~~l~~l  137 (369)
                      .+..++++. ..+.+|
T Consensus       138 dfe~lp~dv-g~lt~l  152 (264)
T KOG0617|consen  138 DFEILPPDV-GKLTNL  152 (264)
T ss_pred             CcccCChhh-hhhcce
Confidence            999998753 444443

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.94  E-value=4.5e-05  Score=55.59  Aligned_cols=68  Identities=18%  Similarity=0.217  Sum_probs=46.7

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      ....+..|++|+|.|+... ....+.|++++..........  ..       .......+.|..++.+|+|.|.|...
T Consensus         8 p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~--~~-------~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           8 PSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYE--KH-------HGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceeccc--cc-------CCeEEEEEEecCCCcccCEEEEEEEE
Confidence            4567889999999998865 455799999885422100000  00       01124478999999999999999974

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>KOG0472|consensus

Probab=97.90  E-value=4.2e-06  Score=74.78  Aligned_cols=77  Identities=32%  Similarity=0.493  Sum_probs=47.8

Q ss_pred             ceEEEecCCCCCccCCCCC--CCccEEEeeccee--------------------------ChhhccCCcccCeeeccCCc
Q psy12695         47 KETVLCKAKNFTTIPEQLD--VGTQVLDLSDNFL--------------------------DRYTFRKLINLVELDLSYNQ   98 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~~--~~~~~L~l~~n~i--------------------------~~~~f~~l~~L~~L~Ls~N~   98 (369)
                      .+-++.++|-|..+|..+.  ..++.|+|++|++                          .+.-..+|.+|..|||.+|.
T Consensus       437 Lt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd  516 (565)
T KOG0472|consen  437 LTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND  516 (565)
T ss_pred             ceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc
Confidence            3457777777888997663  4589999999982                          22334455555555555555


Q ss_pred             ccccCCccccccccccccccccccee
Q psy12695         99 IQFVPSHILDSILELRELKLSGNPIQ  124 (369)
Q Consensus        99 l~~i~~~~f~~l~~L~~L~L~~N~l~  124 (369)
                      |..||+. ++++.+|+.|+|.||++.
T Consensus       517 lq~IPp~-LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  517 LQQIPPI-LGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhCChh-hccccceeEEEecCCccC
Confidence            5555553 455555555555555554

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.87  E-value=0.0002  Score=52.09  Aligned_cols=82  Identities=17%  Similarity=0.242  Sum_probs=48.4

Q ss_pred             CeEEEEEEeeC-CCCCeEEEEeCCe----Eeeeccc---cccc-CCcceEEE-EeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        161 ENVTLSCRATG-SPVPKIKWIFKEK----IIANISS---GLAN-MNKRQYII-KTINSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       161 ~~~~l~C~~~g-~p~p~i~W~~~~~----~~~~~~~---~~~~-~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      +.++|.|.... .....+.|.+...    .+...+.   .... .-..|... ........|.|.+++.+|+|.|.|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            46789998853 2345688988532    2221111   1110 00112211 112246789999999999999999985


Q ss_pred             e-CCceEEEEEEE
Q psy12695        231 N-GAGEVFTNISL  242 (369)
Q Consensus       231 n-~~g~~~~~~~l  242 (369)
                      . +.|..++.+.+
T Consensus        81 t~P~g~~~~~i~~   93 (96)
T cd05889          81 TYPQGSWEKVIEV   93 (96)
T ss_pred             eCCCCCeEEEEEE
Confidence            5 56777766554

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>PHA03376 BARF1; Provisional

Probab=97.85  E-value=0.00022  Score=57.15  Aligned_cols=85  Identities=26%  Similarity=0.259  Sum_probs=54.4

Q ss_pred             CeeeccCCeEEEEEEee---CCCCCeEEEEeC----CeEeeecccccc----cCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        154 DVTAEENENVTLSCRAT---GSPVPKIKWIFK----EKIIANISSGLA----NMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~---g~p~p~i~W~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      .+.+..|+.+.|+|...   ..+.-.|.|++.    ...+........    ...+.++.+....++-.|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            46678999999999875   234456999994    332222111111    1122233333334677899999999999


Q ss_pred             EEEEEEEEeCCceEEE
Q psy12695        223 GIYTCRAKNGAGEVFT  238 (369)
Q Consensus       223 G~Y~C~a~n~~g~~~~  238 (369)
                      |+|.|...........
T Consensus       100 GtY~C~fQkge~~~~k  115 (221)
T PHA03376        100 GNYLCRMKLGETEVTK  115 (221)
T ss_pred             ceEEEEEEcCCCceee
Confidence            9999999765544433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.79  E-value=9.1e-06  Score=80.86  Aligned_cols=71  Identities=21%  Similarity=0.213  Sum_probs=47.4

Q ss_pred             CCccEEEeecceeChhhccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCcccccCcCccccc
Q psy12695         66 VGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDF  142 (369)
Q Consensus        66 ~~~~~L~l~~n~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~  142 (369)
                      .+++.|+|++|+|..-. ...++|+.|+|++|+|+.||..    ..+|+.|+|++|.|+.+|. .|.+++.+...++
T Consensus       382 ~~L~~LdLs~N~Lt~LP-~l~s~L~~LdLS~N~LssIP~l----~~~L~~L~Ls~NqLt~LP~-sl~~L~~L~~LdL  452 (788)
T PRK15387        382 SGLKELIVSGNRLTSLP-VLPSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLPE-SLIHLSSETTVNL  452 (788)
T ss_pred             cccceEEecCCcccCCC-CcccCCCEEEccCCcCCCCCcc----hhhhhhhhhccCcccccCh-HHhhccCCCeEEC
Confidence            45666666666655211 1235688889999998888752    3468889999999998875 4556666554443

>KOG0472|consensus

Probab=97.79  E-value=9.8e-07  Score=78.68  Aligned_cols=83  Identities=25%  Similarity=0.364  Sum_probs=52.4

Q ss_pred             ceEEEecCCCCCccCCCCC--CCccEEEeecceeC-hhhccCCcccCeeeccCCcccccCCcccccccccccccccccce
Q psy12695         47 KETVLCKAKNFTTIPEQLD--VGTQVLDLSDNFLD-RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI  123 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~~--~~~~~L~l~~n~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l  123 (369)
                      .+.++|..|-|..+|+.+-  ..+..|+|..|+|. --.|.+.+.|++|.++.|+|..+|+....+|++|..|||.+|++
T Consensus       185 L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl  264 (565)
T KOG0472|consen  185 LKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL  264 (565)
T ss_pred             HHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc
Confidence            4578888888888888763  45667777888754 12555555555555555555555555555555555555555555


Q ss_pred             ecccCC
Q psy12695        124 QKITHE  129 (369)
Q Consensus       124 ~~~~~~  129 (369)
                      +.+|.+
T Consensus       265 ke~Pde  270 (565)
T KOG0472|consen  265 KEVPDE  270 (565)
T ss_pred             ccCchH
Confidence            555544

>smart00406 IGv Immunoglobulin V-Type

Probab=97.77  E-value=6.2e-05  Score=52.94  Aligned_cols=68  Identities=26%  Similarity=0.444  Sum_probs=42.3

Q ss_pred             eEEEEEEeeCCCCC--eEEEEeCCe-----Eeeecc--ccccc--CCcceEEEEee--cceeeEEEcccCCCCCEEEEEE
Q psy12695        162 NVTLSCRATGSPVP--KIKWIFKEK-----IIANIS--SGLAN--MNKRQYIIKTI--NSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       162 ~~~l~C~~~g~p~p--~i~W~~~~~-----~~~~~~--~~~~~--~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      ++.|.|.+.....+  .+.|++...     .+....  .....  ....++.+...  .+...|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            36899998765554  799998542     111111  11111  12234444333  5567899999999999999996


Q ss_pred             E
Q psy12695        229 A  229 (369)
Q Consensus       229 a  229 (369)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            3

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.74  E-value=0.00021  Score=50.65  Aligned_cols=67  Identities=16%  Similarity=0.384  Sum_probs=41.3

Q ss_pred             EEEEEEeeC-CCCCeEEEEeCCeEeeecccccccCCc-ceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695        163 VTLSCRATG-SPVPKIKWIFKEKIIANISSGLANMNK-RQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG  234 (369)
Q Consensus       163 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g  234 (369)
                      +.|.|.+.| .|.+.|+|++++..+..........+. ..|.+     .+.|.+......|...|.|.+.+...
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~-----~s~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTV-----SSSVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEE-----EEEEEEEecchhCCCEEEEEEECccc
Confidence            679999977 588899999999776432111110111 12211     34566645555566799999988763

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd00096 Ig Immunoglobulin domain

Probab=97.74  E-value=0.00016  Score=48.55  Aligned_cols=67  Identities=42%  Similarity=0.601  Sum_probs=45.3

Q ss_pred             EEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695        163 VTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG  234 (369)
Q Consensus       163 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g  234 (369)
                      +.|.|.+.+.+...+.|++++..........     .............|.|.+++..|.|.|.|.+.+..+
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~   67 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTR-----VRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAG   67 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEE-----eccccCcceeEEEEEECccCcccCcEEEEEEecCcC
Confidence            3689999887778899999876543211100     000011123456799999999999999999987763

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>KOG1259|consensus

Probab=97.70  E-value=7.3e-06  Score=70.58  Aligned_cols=79  Identities=24%  Similarity=0.194  Sum_probs=51.1

Q ss_pred             eEEEecCCCCCccCCCC--CCCccEEEeecceeC-hhhccCCcccCeeeccCCcccccCCccccccccccccccccccee
Q psy12695         48 ETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLD-RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ  124 (369)
Q Consensus        48 ~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~  124 (369)
                      +.++.+.|.++.|-.+.  -+.++.|+||+|.|. -+.++.|++|+.||||+|.|+.+.. .-..|.+.+.|.|++|.|.
T Consensus       287 telDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La~N~iE  365 (490)
T KOG1259|consen  287 TELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLAQNKIE  365 (490)
T ss_pred             hhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh-hHhhhcCEeeeehhhhhHh
Confidence            45666777776665433  456777777777754 3446777777777777777776632 3345667777777777666


Q ss_pred             ccc
Q psy12695        125 KIT  127 (369)
Q Consensus       125 ~~~  127 (369)
                      .+.
T Consensus       366 ~LS  368 (490)
T KOG1259|consen  366 TLS  368 (490)
T ss_pred             hhh
Confidence            554

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.61  E-value=0.00028  Score=50.76  Aligned_cols=71  Identities=25%  Similarity=0.439  Sum_probs=43.3

Q ss_pred             CCeEEEEEEe-eCCCCCeEEEEeCCeEeeeccc-ccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCce
Q psy12695        160 NENVTLSCRA-TGSPVPKIKWIFKEKIIANISS-GLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE  235 (369)
Q Consensus       160 G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~  235 (369)
                      |+.+.+.|.+ .|.|.|.|.|+.++........ .........+.     ..+.|.+..-...+...+.|.|.+..-.
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~-----~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFT-----VSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEE-----EEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcce-----EEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            7899999977 6799999999999877611100 00001111111     1345666554444566899999987644

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.59  E-value=0.00054  Score=48.53  Aligned_cols=66  Identities=21%  Similarity=0.474  Sum_probs=40.7

Q ss_pred             EEEEEEeeC-CCCCeEEEEeCCeEeeecccccc-cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        163 VTLSCRATG-SPVPKIKWIFKEKIIANISSGLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       163 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ++|.|.+.| .|...|+|++++..+........ ......|.     ..+.|.+..-...+...|.|.+.+..
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~-----~~s~L~~~~~~~d~g~~ytC~v~h~~   69 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFT-----VSSTLDFRVDRSDDGVAIICRVDHES   69 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEE-----EEEEEEEEcccccCCCEEEEEEechh
Confidence            679999976 77778999999987643221111 11111222     24466665444445558999998765

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>KOG1644|consensus

Probab=97.53  E-value=3.8e-05  Score=62.49  Aligned_cols=61  Identities=28%  Similarity=0.317  Sum_probs=54.7

Q ss_pred             CccEEEeecceeC-hhhccCCcccCeeeccCCcccccCCcccccccccccccccccceeccc
Q psy12695         67 GTQVLDLSDNFLD-RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT  127 (369)
Q Consensus        67 ~~~~L~l~~n~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~  127 (369)
                      ....+||++|+|- -..|.+++.|..|+|++|+|+.|.++.-.-+++|..|.|.+|+|..+.
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~  104 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELG  104 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhh
Confidence            4678999999965 578999999999999999999999988788889999999999998875

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.51  E-value=0.00066  Score=53.44  Aligned_cols=84  Identities=23%  Similarity=0.356  Sum_probs=48.0

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCC-CC-CeEEEEeCCeEeee--c--ccc----cccCCcceEEEEeecceeeEEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGS-PV-PKIKWIFKEKIIAN--I--SSG----LANMNKRQYIIKTINSLSNLTI  214 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~i~W~~~~~~~~~--~--~~~----~~~~~~~~~~~~~~~~~~~L~I  214 (369)
                      .|.+...+......+|+.+.|.|.+.|. |. +.|.|++++.....  .  ...    ........|.+     .+.|.+
T Consensus        38 ~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~-----~s~L~v  112 (139)
T cd05771          38 PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSL-----SSHLTL  112 (139)
T ss_pred             CCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEE-----EEEEEe
Confidence            3444434444444578999999999986 43 37999998753211  0  000    00011122222     456777


Q ss_pred             cccCCCCCEEEEEEEEeCC
Q psy12695        215 VAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       215 ~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ..-...+.+.|.|.+.+..
T Consensus       113 ~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771         113 EPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             cCCccCCCCEEEEEEEcCC
Confidence            6555455669999997654

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>KOG1859|consensus

Probab=97.50  E-value=6.6e-06  Score=78.76  Aligned_cols=80  Identities=28%  Similarity=0.356  Sum_probs=64.1

Q ss_pred             ceEEEecCCCCCccCCCC--CCCccEEEeecceeCh-hhccCCcccCeeeccCCcccccCCcccccccccccccccccce
Q psy12695         47 KETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI  123 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l  123 (369)
                      ...++|+.|.|..+-..+  -+.++.|+|++|++.. .....+++|+.|||++|.|+.+|.-.-.+.. |..|.|.||.+
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l  244 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNAL  244 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHH
Confidence            457889999998776654  4679999999999774 4666899999999999999999886655653 88888888877


Q ss_pred             eccc
Q psy12695        124 QKIT  127 (369)
Q Consensus       124 ~~~~  127 (369)
                      +++.
T Consensus       245 ~tL~  248 (1096)
T KOG1859|consen  245 TTLR  248 (1096)
T ss_pred             Hhhh
Confidence            7653

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.50  E-value=0.001  Score=48.62  Aligned_cols=75  Identities=20%  Similarity=0.331  Sum_probs=48.4

Q ss_pred             CCeeeccCCeEEEEEEeeC-CCCCe--EEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE-EEEEE
Q psy12695        153 PDVTAEENENVTLSCRATG-SPVPK--IKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG-IYTCR  228 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g-~p~p~--i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~  228 (369)
                      ....+.+|+.++|.|.+.| .|.+.  |.||+++..+........  ...     .......+.+. +..+|.| .|.|.
T Consensus         9 ~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~--~~~-----~~~~~stlt~~-~~r~D~g~~~sC~   80 (100)
T cd05755           9 LPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDN--TKS-----PVNAPATITIT-VDREDHGANFSCE   80 (100)
T ss_pred             CCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccc--cCC-----CceeEEEEEEe-cchhhCCcEEEEE
Confidence            3445689999999999965 67776  799999987754221100  000     11123456664 4566666 89999


Q ss_pred             EEeCCce
Q psy12695        229 AKNGAGE  235 (369)
Q Consensus       229 a~n~~g~  235 (369)
                      |.+..+.
T Consensus        81 A~l~l~~   87 (100)
T cd05755          81 TELDLRP   87 (100)
T ss_pred             EEeccCc
Confidence            9987654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>KOG1259|consensus

Probab=97.47  E-value=2.7e-05  Score=67.13  Aligned_cols=58  Identities=33%  Similarity=0.385  Sum_probs=48.8

Q ss_pred             ccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCcccccccccccccccccceeccc
Q psy12695         68 TQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT  127 (369)
Q Consensus        68 ~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~  127 (369)
                      ++.||||+|.|.  ..+..-++.++.|+||+|.|..+..  +..|++|..|||++|.++.+.
T Consensus       286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~  345 (490)
T KOG1259|consen  286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECV  345 (490)
T ss_pred             hhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhh
Confidence            578999999987  3456678999999999999999866  567899999999999988764

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.45  E-value=6e-05  Score=38.51  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=16.3

Q ss_pred             ccCeeeccCCcccccCCcccccc
Q psy12695         88 NLVELDLSYNQIQFVPSHILDSI  110 (369)
Q Consensus        88 ~L~~L~Ls~N~l~~i~~~~f~~l  110 (369)
                      +|++|||++|+|+.||+. |.+|
T Consensus         1 ~L~~Ldls~n~l~~ip~~-~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS-FSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTT-TTT-
T ss_pred             CccEEECCCCcCEeCChh-hcCC
Confidence            478888888888888776 6643

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0532|consensus

Probab=97.43  E-value=3.9e-05  Score=71.70  Aligned_cols=101  Identities=21%  Similarity=0.362  Sum_probs=51.7

Q ss_pred             CCCeecccCCceEEEecCCCCCccCCCCC--CCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCcccccccc
Q psy12695         37 STCECKWKGGKETVLCKAKNFTTIPEQLD--VGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILE  112 (369)
Q Consensus        37 ~~C~c~~~~~~~~~~c~~~~l~~ip~~~~--~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~  112 (369)
                      .-|.|.    .+.+-.++|+++.+|..+-  ..+..||.+.|+|.  +....+|.+|+.|.+..|++..+|+..- .| .
T Consensus       139 ~lC~lp----Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~L-p  212 (722)
T KOG0532|consen  139 GLCDLP----LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SL-P  212 (722)
T ss_pred             hhhcCc----ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CC-c
Confidence            346665    4556666777777776552  34556677777643  3334445555554444444444444322 33 2


Q ss_pred             cccccccccceecccCCcccccCcCccccccC
Q psy12695        113 LRELKLSGNPIQKITHEAFINVPKLNLEDFAC  144 (369)
Q Consensus       113 L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~c  144 (369)
                      |..||++.|+|+.|+- -|..+..|....+.|
T Consensus       213 Li~lDfScNkis~iPv-~fr~m~~Lq~l~Len  243 (722)
T KOG0532|consen  213 LIRLDFSCNKISYLPV-DFRKMRHLQVLQLEN  243 (722)
T ss_pred             eeeeecccCceeecch-hhhhhhhheeeeecc
Confidence            4555555555555542 344444444444433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.34  E-value=9.7e-05  Score=69.17  Aligned_cols=92  Identities=33%  Similarity=0.488  Sum_probs=74.7

Q ss_pred             ceEEEecCCCCCccCCCC--CC-CccEEEeecceeChh--hccCCcccCeeeccCCcccccCCccccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQL--DV-GTQVLDLSDNFLDRY--TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN  121 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~--~~-~~~~L~l~~n~i~~~--~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N  121 (369)
                      ...+.+.+++++.+|...  .. +++.|++++|+|...  ....+++|+.|++++|+|+.+++.. ..++.|+.|++++|
T Consensus       118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~~~L~~L~ls~N  196 (394)
T COG4886         118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL-SNLSNLNNLDLSGN  196 (394)
T ss_pred             eeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhh-hhhhhhhheeccCC
Confidence            567889999999998755  32 799999999999864  8899999999999999999998853 26789999999999


Q ss_pred             ceecccCC--cccccCcCcc
Q psy12695        122 PIQKITHE--AFINVPKLNL  139 (369)
Q Consensus       122 ~l~~~~~~--~f~~l~~l~~  139 (369)
                      .++.++..  .-..+..+..
T Consensus       197 ~i~~l~~~~~~~~~L~~l~~  216 (394)
T COG4886         197 KISDLPPEIELLSALEELDL  216 (394)
T ss_pred             ccccCchhhhhhhhhhhhhh
Confidence            99999875  2333444433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=97.31  E-value=0.00012  Score=39.16  Aligned_cols=23  Identities=48%  Similarity=0.602  Sum_probs=19.7

Q ss_pred             CcccCeeeccCCcccccCCcccc
Q psy12695         86 LINLVELDLSYNQIQFVPSHILD  108 (369)
Q Consensus        86 l~~L~~L~Ls~N~l~~i~~~~f~  108 (369)
                      |++|+.|+|++|+|+.||+++|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            56789999999999999988886

>smart00370 LRR Leucine-rich repeats, outliers

Probab=97.31  E-value=0.00012  Score=39.16  Aligned_cols=23  Identities=48%  Similarity=0.602  Sum_probs=19.7

Q ss_pred             CcccCeeeccCCcccccCCcccc
Q psy12695         86 LINLVELDLSYNQIQFVPSHILD  108 (369)
Q Consensus        86 l~~L~~L~Ls~N~l~~i~~~~f~  108 (369)
                      |++|+.|+|++|+|+.||+++|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            56789999999999999988886

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.21  E-value=0.00022  Score=56.15  Aligned_cols=40  Identities=25%  Similarity=0.400  Sum_probs=35.8

Q ss_pred             eEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCc
Q psy12695        211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA  250 (369)
Q Consensus       211 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~  250 (369)
                      .|.|.+++.+|+|.|.|.+.+..|.....+.|.|..+|..
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v   41 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRV   41 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCce
Confidence            5899999999999999999999899999999999876644

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.18  E-value=0.0045  Score=46.09  Aligned_cols=80  Identities=16%  Similarity=0.166  Sum_probs=51.7

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCCC---eEEEEeCCeEe---ee---cccccccCCcceE--EEEeecceeeEEEcccCC
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPVP---KIKWIFKEKII---AN---ISSGLANMNKRQY--IIKTINSLSNLTIVAVTM  219 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~p---~i~W~~~~~~~---~~---~~~~~~~~~~~~~--~~~~~~~~~~L~I~~v~~  219 (369)
                      .+....+..|+.++|.|.++|....   .+.|+++....   ..   .........+.++  ..+...+.-.|.|.+++.
T Consensus         4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a   83 (115)
T cd05721           4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA   83 (115)
T ss_pred             ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH
Confidence            3456778899999999999775544   48899853221   11   0111111123333  333445566899999999


Q ss_pred             CCCEEEEEEEE
Q psy12695        220 SDSGIYTCRAK  230 (369)
Q Consensus       220 ~D~G~Y~C~a~  230 (369)
                      +|.+.|.|...
T Consensus        84 ~DTa~Y~Ca~e   94 (115)
T cd05721          84 NQTDIYFCKIE   94 (115)
T ss_pred             HHCeEEEEEee
Confidence            99999999753

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>KOG0532|consensus

Probab=97.17  E-value=7e-05  Score=70.03  Aligned_cols=105  Identities=28%  Similarity=0.430  Sum_probs=82.8

Q ss_pred             CCCeecccCCceEEEecCCCCCccCCCCC-CCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCccccccccc
Q psy12695         37 STCECKWKGGKETVLCKAKNFTTIPEQLD-VGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILEL  113 (369)
Q Consensus        37 ~~C~c~~~~~~~~~~c~~~~l~~ip~~~~-~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L  113 (369)
                      +.|.|... ..+.++.+.|.+..+|..+. --++.|.+++|++.  +.....+..|..||.+.|+|..++.. ..+|.+|
T Consensus       114 p~~i~~L~-~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsq-l~~l~sl  191 (722)
T KOG0532|consen  114 PEAICNLE-ALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQ-LGYLTSL  191 (722)
T ss_pred             chhhhhhh-HHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHH-hhhHHHH
Confidence            34566533 25678899999999998774 45899999999966  44556889999999999999999884 6899999


Q ss_pred             ccccccccceecccCCcccccCcCccccccCC
Q psy12695        114 RELKLSGNPIQKITHEAFINVPKLNLEDFACS  145 (369)
Q Consensus       114 ~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~c~  145 (369)
                      +.|.+..|.+..+++..- .|+ |...||.|.
T Consensus       192 r~l~vrRn~l~~lp~El~-~Lp-Li~lDfScN  221 (722)
T KOG0532|consen  192 RDLNVRRNHLEDLPEELC-SLP-LIRLDFSCN  221 (722)
T ss_pred             HHHHHhhhhhhhCCHHHh-CCc-eeeeecccC
Confidence            999999999999987654 443 445667774

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.10  E-value=0.0057  Score=45.89  Aligned_cols=73  Identities=18%  Similarity=0.327  Sum_probs=44.0

Q ss_pred             eeeccCCeEEEEEEeeCCCC--CeEEEEeCCeEeeecccccccCCc-ceEEEEeecceeeEEEcccCCCCCE-EEEEEEE
Q psy12695        155 VTAEENENVTLSCRATGSPV--PKIKWIFKEKIIANISSGLANMNK-RQYIIKTINSLSNLTIVAVTMSDSG-IYTCRAK  230 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~  230 (369)
                      .....|+.++|.|.+.|.-+  ..++|+++|..+..........+. ..|..     .+.|.+.. ...|.| .|.|.+.
T Consensus        16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~-----~S~L~~~~-~~~d~~~~ytC~V~   89 (111)
T cd05772          16 GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNV-----TSTVQVKL-TEDDVHSQVTCEVQ   89 (111)
T ss_pred             hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEE-----EEEEEEEC-ccccccCceEEEEE
Confidence            34457888999999988444  378999999886532211111111 12322     34565543 444444 5999998


Q ss_pred             eCC
Q psy12695        231 NGA  233 (369)
Q Consensus       231 n~~  233 (369)
                      ...
T Consensus        90 H~~   92 (111)
T cd05772          90 HRT   92 (111)
T ss_pred             eCC
Confidence            764

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>PLN03210 Resistant to P

Probab=97.03  E-value=0.0016  Score=69.30  Aligned_cols=89  Identities=18%  Similarity=0.255  Sum_probs=60.6

Q ss_pred             ceEEEecCCCCCccCCCC-CCCccEEEeecceeC--hhhccCCcccCeeeccCCc-ccccCCcccccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQL-DVGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQ-IQFVPSHILDSILELRELKLSGNP  122 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~-~~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~  122 (369)
                      .+.+...++.++.+|..+ +.+++.|+|++|+|.  +..+..+++|+.|+|++|. +..+|.  +..+++|+.|+|++|.
T Consensus       591 Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~  668 (1153)
T PLN03210        591 LRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCS  668 (1153)
T ss_pred             cEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCC
Confidence            455677777788888766 678889999998876  3456778888888888754 666654  5667778888887753


Q ss_pred             -eecccCCcccccCcCc
Q psy12695        123 -IQKITHEAFINVPKLN  138 (369)
Q Consensus       123 -l~~~~~~~f~~l~~l~  138 (369)
                       +..++ ..+.++.+|.
T Consensus       669 ~L~~lp-~si~~L~~L~  684 (1153)
T PLN03210        669 SLVELP-SSIQYLNKLE  684 (1153)
T ss_pred             Cccccc-hhhhccCCCC
Confidence             44443 2344444433

syringae 6; Provisional

>PHA02633 hypothetical protein; Provisional

Probab=97.01  E-value=0.0024  Score=41.23  Aligned_cols=41  Identities=32%  Similarity=0.393  Sum_probs=35.0

Q ss_pred             ceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecC
Q psy12695        208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       208 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      ....|.|.++..+|+|.|.|+..|..-....++.++|....
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~   56 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI   56 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence            35679999999999999999999988778888888887654

>KOG0531|consensus

Probab=97.00  E-value=0.00026  Score=66.70  Aligned_cols=80  Identities=35%  Similarity=0.320  Sum_probs=58.6

Q ss_pred             ceEEEecCCCCCccCCCC--CCCccEEEeecceeCh-hhccCCcccCeeeccCCcccccCCcccccccccccccccccce
Q psy12695         47 KETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI  123 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l  123 (369)
                      ...++..+|.++.+...+  -.++++|+|++|+|.. ..+..++.|+.|++++|.|+.+..  |..+..|+.++|++|++
T Consensus        97 l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i  174 (414)
T KOG0531|consen   97 LEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYNRI  174 (414)
T ss_pred             eeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC--CccchhhhcccCCcchh
Confidence            456777788888776633  3578888888888764 345666668888888888887754  55577888888888888


Q ss_pred             ecccC
Q psy12695        124 QKITH  128 (369)
Q Consensus       124 ~~~~~  128 (369)
                      ..+..
T Consensus       175 ~~ie~  179 (414)
T KOG0531|consen  175 VDIEN  179 (414)
T ss_pred             hhhhh
Confidence            88776

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.98  E-value=0.0046  Score=44.84  Aligned_cols=66  Identities=24%  Similarity=0.430  Sum_probs=38.7

Q ss_pred             CCeEEEEEEeeCCCCC--eEEEEeCCeEeeecc-cccc-cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        160 NENVTLSCRATGSPVP--KIKWIFKEKIIANIS-SGLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       160 G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      |+.++|.|.+.|..++  .+.|++++....... .... ..+...|..     .+.|.+   ...+.+.|+|.+....
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~-----~s~l~v---~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQL-----WVTLEV---PPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEE-----EEEEEE---CCCCCCEEEEEEEeCC
Confidence            7789999999995444  789999986322111 1111 111112221     234444   3447789999997754

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=96.96  E-value=0.0076  Score=41.67  Aligned_cols=66  Identities=24%  Similarity=0.414  Sum_probs=39.3

Q ss_pred             EEEEEEeeCC-CC-CeEEEEeCCeEeeeccc-ccc-cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        163 VTLSCRATGS-PV-PKIKWIFKEKIIANISS-GLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       163 ~~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ++|.|.+.|. |. ..+.|++++..+..... ... ..+...|..     .+.|.+......+...|.|.+....
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~-----~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFL-----SSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEE-----EEEEEEccccCCCCCEEEEEEEEcC
Confidence            6799999985 44 47999999875332111 000 011222222     4556665555566679999997653

>KOG4579|consensus

Probab=96.89  E-value=0.00012  Score=55.96  Aligned_cols=91  Identities=26%  Similarity=0.304  Sum_probs=65.6

Q ss_pred             EEEecCCCCCccCC---CCCC--CccEEEeecceeC--hhhcc-CCcccCeeeccCCcccccCCcccccccccccccccc
Q psy12695         49 TVLCKAKNFTTIPE---QLDV--GTQVLDLSDNFLD--RYTFR-KLINLVELDLSYNQIQFVPSHILDSILELRELKLSG  120 (369)
Q Consensus        49 ~~~c~~~~l~~ip~---~~~~--~~~~L~l~~n~i~--~~~f~-~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  120 (369)
                      .++.++..|-.+++   .+..  .++..+|++|.+.  +..|. ..+.++.|+|++|+|+.+|.. |..++.|+.|+++.
T Consensus        31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~  109 (177)
T KOG4579|consen   31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRF  109 (177)
T ss_pred             hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhccccc
Confidence            34444555554543   2322  4667899999976  44555 556899999999999999997 99999999999999


Q ss_pred             cceecccCCcccccCcCcccc
Q psy12695        121 NPIQKITHEAFINVPKLNLED  141 (369)
Q Consensus       121 N~l~~~~~~~f~~l~~l~~~~  141 (369)
                      |+|...+.-.| .|.+++..+
T Consensus       110 N~l~~~p~vi~-~L~~l~~Ld  129 (177)
T KOG4579|consen  110 NPLNAEPRVIA-PLIKLDMLD  129 (177)
T ss_pred             CccccchHHHH-HHHhHHHhc
Confidence            99998875433 365554433

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.82  E-value=0.00061  Score=32.22  Aligned_cols=17  Identities=47%  Similarity=0.614  Sum_probs=9.7

Q ss_pred             cccCeeeccCCcccccC
Q psy12695         87 INLVELDLSYNQIQFVP  103 (369)
Q Consensus        87 ~~L~~L~Ls~N~l~~i~  103 (369)
                      ++|+.|+|++|+|+.+|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            36788888888877664

...

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.82  E-value=0.011  Score=42.94  Aligned_cols=67  Identities=16%  Similarity=0.225  Sum_probs=37.9

Q ss_pred             CCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE-EEEEEEEeCCc
Q psy12695        160 NENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG-IYTCRAKNGAG  234 (369)
Q Consensus       160 G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n~~g  234 (369)
                      .....+.|.+ .|.|.+.|.|+++........  ........+.+     .+.|.+.. +.+|.| .|+|.+.+..-
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~--~~~~~~g~~tv-----~S~l~~~p-~~~d~G~~~tC~v~h~~l   83 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETTLGGEAETQ--SKENPNGTVTV-----TSEYRLVP-SREANGKELTCVVSHPTL   83 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeCCCCcceeE--eecCCCCCEEE-----EEEEEEec-CHHHCCCEEEEEEeCccc
Confidence            3456789999 689999999998621110000  00001111211     34566644 444555 89999988763

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>KOG1644|consensus

Probab=96.74  E-value=0.002  Score=52.75  Aligned_cols=96  Identities=25%  Similarity=0.250  Sum_probs=71.9

Q ss_pred             ceEEEecCCCCCccCCCC--CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCC-cccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPS-HILDSILELRELKLSG  120 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~~  120 (369)
                      ...++.++|.+..++. +  +..+.+|.|++|+|.   +.--.-+++|+.|.|.+|.|..+.. +-...+++|+.|.+-+
T Consensus        44 ~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             cceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            3568889999887765 3  468999999999954   5555567889999999999887432 2245788999999999


Q ss_pred             cceecccC---CcccccCcCcccccc
Q psy12695        121 NPIQKITH---EAFINVPKLNLEDFA  143 (369)
Q Consensus       121 N~l~~~~~---~~f~~l~~l~~~~~~  143 (369)
                      |++..-..   .+.-.+++|...||+
T Consensus       123 Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  123 NPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             CchhcccCceeEEEEecCcceEeehh
Confidence            99876543   234466777777765

>KOG1859|consensus

Probab=96.71  E-value=0.00025  Score=68.39  Aligned_cols=81  Identities=27%  Similarity=0.246  Sum_probs=56.7

Q ss_pred             ceEEEecCCCCCccCCCCCC--CccEEEeecceeCh-hhccCCcccCeeeccCCcccccCCccc-ccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQLDV--GTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHIL-DSILELRELKLSGNP  122 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~~~--~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f-~~l~~L~~L~L~~N~  122 (369)
                      .++++.+.|.|+.+|..=+.  .++.|.|+||-+.. ....+|.+|+.|||++|-|.....-.| ..|..|+.|+|.||+
T Consensus       211 LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  211 LKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             ccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            45677788888888764443  37778888887653 345678888888888888876544433 345678888888888


Q ss_pred             eeccc
Q psy12695        123 IQKIT  127 (369)
Q Consensus       123 l~~~~  127 (369)
                      |-+-+
T Consensus       291 l~c~p  295 (1096)
T KOG1859|consen  291 LCCAP  295 (1096)
T ss_pred             cccCH
Confidence            87654

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.68  E-value=0.0061  Score=40.50  Aligned_cols=50  Identities=24%  Similarity=0.446  Sum_probs=35.6

Q ss_pred             cCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       159 ~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ..+.|.|.|.+    ...|.|++ |..+...                  ....|.+.....+-.|.|.|.+++
T Consensus         5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~------------------~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           5 SEGKVFLKCNG----ATNITWKK-GKEILEV------------------SNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             cCceEEEEecC----CCcEEEec-Ccccccc------------------cccEEeccCcccCCCcceEecCcc
Confidence            45679999976    24599999 5433211                  134677777788889999999877

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=96.67  E-value=0.014  Score=42.35  Aligned_cols=72  Identities=15%  Similarity=0.366  Sum_probs=41.7

Q ss_pred             cCCeEEEEEEeeCCCCC--eEEEEeCCeEeeec-ccc-cccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695        159 ENENVTLSCRATGSPVP--KIKWIFKEKIIANI-SSG-LANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG  234 (369)
Q Consensus       159 ~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g  234 (369)
                      .++.++|.|.+.|.-++  .|.|++++..+... ... ........|..     .+.|.+..-.-.+...|.|.+.....
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~-----~S~L~v~~~~w~~~~~ytC~V~H~~~   87 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFST-----TSELNVTQEDWKSGKTYTCKVTHQGT   87 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEE-----EEEEEEchHHhcCCCeEEEEEEECCe
Confidence            45668999999984443  58999998765221 110 11111123322     34566654333345689999987654


Q ss_pred             e
Q psy12695        235 E  235 (369)
Q Consensus       235 ~  235 (369)
                      .
T Consensus        88 ~   88 (94)
T cd05847          88 T   88 (94)
T ss_pred             e
Confidence            3

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>KOG2123|consensus

Probab=96.66  E-value=8.4e-05  Score=63.52  Aligned_cols=85  Identities=25%  Similarity=0.210  Sum_probs=67.7

Q ss_pred             eecccCCceEEEecCCCCCccCCCC-CCCccEEEeecceeCh-hhccCCcccCeeeccCCcccccCCcc-cccccccccc
Q psy12695         40 ECKWKGGKETVLCKAKNFTTIPEQL-DVGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHI-LDSILELREL  116 (369)
Q Consensus        40 ~c~~~~~~~~~~c~~~~l~~ip~~~-~~~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~-f~~l~~L~~L  116 (369)
                      +|+.....+.++|=+.+|..|.-.. =+.+.+|.||=|.|.. ..|..+++|++|+|..|.|..|..-. +.+|++|+.|
T Consensus        14 K~sdl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   14 KCSDLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HhhHHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            3554444567999999999876433 2478999999999985 56899999999999999999886543 3689999999


Q ss_pred             ccccccee
Q psy12695        117 KLSGNPIQ  124 (369)
Q Consensus       117 ~L~~N~l~  124 (369)
                      .|..|+=.
T Consensus        94 WL~ENPCc  101 (388)
T KOG2123|consen   94 WLDENPCC  101 (388)
T ss_pred             hhccCCcc
Confidence            99999754

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.58  E-value=0.00095  Score=34.00  Aligned_cols=22  Identities=41%  Similarity=0.616  Sum_probs=18.6

Q ss_pred             ccccccccccceecccCCccccc
Q psy12695        112 ELRELKLSGNPIQKITHEAFINV  134 (369)
Q Consensus       112 ~L~~L~L~~N~l~~~~~~~f~~l  134 (369)
                      +|++|+|++|.|+.++++ |.++
T Consensus         1 ~L~~Ldls~n~l~~ip~~-~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS-FSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTT-TTT-
T ss_pred             CccEEECCCCcCEeCChh-hcCC
Confidence            589999999999999987 7653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0531|consensus

Probab=96.58  E-value=0.0012  Score=62.33  Aligned_cols=78  Identities=33%  Similarity=0.460  Sum_probs=60.9

Q ss_pred             EEecCCCCCccCCCC--CCCccEEEeecceeChh-h-ccCCcccCeeeccCCcccccCCcccccccccccccccccceec
Q psy12695         50 VLCKAKNFTTIPEQL--DVGTQVLDLSDNFLDRY-T-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK  125 (369)
Q Consensus        50 ~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~~~-~-f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~  125 (369)
                      +.+..+.+..+-..+  ..++..|+|.+|+|..- . +..+++|+.|+|++|+|+.|..  +..+..|+.|++++|.|+.
T Consensus        77 l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~  154 (414)
T KOG0531|consen   77 LNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISD  154 (414)
T ss_pred             hccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchh
Confidence            345556666533323  46789999999998743 3 6889999999999999999865  5678889999999999999


Q ss_pred             ccCC
Q psy12695        126 ITHE  129 (369)
Q Consensus       126 ~~~~  129 (369)
                      +...
T Consensus       155 ~~~~  158 (414)
T KOG0531|consen  155 ISGL  158 (414)
T ss_pred             ccCC
Confidence            9743

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.57  E-value=0.019  Score=41.80  Aligned_cols=76  Identities=13%  Similarity=0.194  Sum_probs=41.7

Q ss_pred             CCeeeccCCeEEEEEEeeCC-CCC--eEEEEeCCeEeeecc-cccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695        153 PDVTAEENENVTLSCRATGS-PVP--KIKWIFKEKIIANIS-SGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~-p~p--~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      ....+..|+.++|.|.+.|. -++  .++|.++++...... ..........|.+     .+.|.+..-.-.+.-.|.|.
T Consensus         7 s~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~-----~s~l~v~~~~w~~g~~ysC~   81 (96)
T cd07696           7 SPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSV-----TSTLNVSTDDWISGDTFQCK   81 (96)
T ss_pred             CHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEE-----EEEEEeCHHHccCCCcEEEE
Confidence            33445668999999999998 333  479999875432211 1111112222322     33454443222223379999


Q ss_pred             EEeCC
Q psy12695        229 AKNGA  233 (369)
Q Consensus       229 a~n~~  233 (369)
                      +....
T Consensus        82 V~H~~   86 (96)
T cd07696          82 VTHPD   86 (96)
T ss_pred             EECCC
Confidence            87654

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=96.54  E-value=0.0058  Score=40.29  Aligned_cols=53  Identities=28%  Similarity=0.503  Sum_probs=35.4

Q ss_pred             eccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        157 AEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       157 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ...|.+|+|+|...+.   .+.|.+++.....                   ....+.+.+-. +++|.|.|.+.+.
T Consensus         4 sisGTtVtlTCP~~~~---~i~W~~n~~~~~g-------------------~~~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           4 SISGTTVTVTCPLSGD---DIKWKKNDQVSQG-------------------SDEKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EEeccEEEEECCCCCC---CceEEeCCccCCC-------------------CCceEEeeccC-CCCceEEEEeCCC
Confidence            3569999999975432   3999998844321                   11234444545 8899999998644

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.50  E-value=0.0075  Score=46.00  Aligned_cols=90  Identities=22%  Similarity=0.255  Sum_probs=50.5

Q ss_pred             ccCCeEEEEEEeeC-----CCCCeEEEEeCCeEeeecccccc-----cCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695        158 EENENVTLSCRATG-----SPVPKIKWIFKEKIIANISSGLA-----NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       158 ~~G~~~~l~C~~~g-----~p~p~i~W~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      .-+++|.|+|.+..     .+...|.|.+++..+........     ...+... .....+..+|.+...+.- .|.|+|
T Consensus        25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i-~~l~kG~aSL~~~~~~a~-~GnYTC  102 (130)
T PF08204_consen   25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKI-SELLKGNASLKMDKSDAV-EGNYTC  102 (130)
T ss_dssp             TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BE-GGGGGTB--EEEEHHHHH--EEEEE
T ss_pred             ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccch-hHhhCCCEEEEEcchhcc-ccceEE
Confidence            34789999999965     22345999999887654322211     0111111 112234556888775555 899999


Q ss_pred             EEEeCCceEEEEEEEEEeecCC
Q psy12695        228 RAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       228 ~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      .+..........+.|......+
T Consensus       103 eVt~~~~ege~~i~Lk~~~~sw  124 (130)
T PF08204_consen  103 EVTELSREGETTIELKYRVVSW  124 (130)
T ss_dssp             EEEETTEEEEEEEEEEE-----
T ss_pred             EEEecCCCceEEEEEEEEEEEE
Confidence            9999988888888888755443

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=96.46  E-value=0.011  Score=43.44  Aligned_cols=73  Identities=16%  Similarity=0.314  Sum_probs=42.9

Q ss_pred             eeccCCeEEEEEEeeCCCC--CeEEEEeCCeEeeeccc-cc-ccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        156 TAEENENVTLSCRATGSPV--PKIKWIFKEKIIANISS-GL-ANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       156 ~~~~G~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ....++.++|.|.+.|.-+  ..|.|+++|..+..... .. .......|.+     .+.|.+..-...+...|.|.+..
T Consensus        13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~-----~s~L~v~~~~w~~~~~~sC~V~H   87 (100)
T cd07699          13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSL-----SSYLTLTKSDWNKHKVYTCEVTH   87 (100)
T ss_pred             HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEE-----EEEEEEcHHHhCCCCeEEEEEEe
Confidence            3446788999999988443  35899999987642211 11 1111222322     34555544443445689999976


Q ss_pred             CC
Q psy12695        232 GA  233 (369)
Q Consensus       232 ~~  233 (369)
                      ..
T Consensus        88 ~~   89 (100)
T cd07699          88 EG   89 (100)
T ss_pred             cC
Confidence            54

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.37  E-value=0.023  Score=41.25  Aligned_cols=69  Identities=17%  Similarity=0.255  Sum_probs=38.2

Q ss_pred             CCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCce
Q psy12695        160 NENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE  235 (369)
Q Consensus       160 G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~  235 (369)
                      .....+.|.+ .|.|.+.|+|+++.........  .......+.+     .+.|.+..-..+|...|+|.+.+..-.
T Consensus        15 ~~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~--~~~~~gt~tv-----~S~l~~~P~~~d~Gk~ltC~v~h~al~   84 (95)
T cd07703          15 IPVPVAKCVSANGRPPARISWSSTLGGNANTTS--KENGDGTVTV-----TSEYSLVPTPEANGKEVTCKVEHETLQ   84 (95)
T ss_pred             CccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEE--EeCCCCCEEE-----EEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            3457789988 5899999999987321110000  0001111111     345666444444444899999987643

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.30  E-value=0.014  Score=43.02  Aligned_cols=73  Identities=21%  Similarity=0.389  Sum_probs=41.7

Q ss_pred             eeccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeecc--cccccCC---cceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695        156 TAEENENVTLSCRATGSPVP--KIKWIFKEKIIANIS--SGLANMN---KRQYIIKTINSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       156 ~~~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      .+..|+.++|.|.+.|..++  .+.|++++..+....  .......   ...|.+     .+.|.+..-.-.+...|.|.
T Consensus        12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~-----~s~L~v~~~~w~~~~~ytC~   86 (102)
T cd05768          12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFL-----YSKLTVSAEDWNAGDVFTCV   86 (102)
T ss_pred             HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEE-----EEEEEEcHHHhcCCCcEEEE
Confidence            34457889999999995554  479999998754321  0111111   122332     34555533222344579999


Q ss_pred             EEeCC
Q psy12695        229 AKNGA  233 (369)
Q Consensus       229 a~n~~  233 (369)
                      +....
T Consensus        87 V~H~~   91 (102)
T cd05768          87 VGHEA   91 (102)
T ss_pred             eEeCC
Confidence            87643

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=96.25  E-value=0.041  Score=39.88  Aligned_cols=68  Identities=24%  Similarity=0.279  Sum_probs=40.1

Q ss_pred             ccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeec-cccc-ccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        158 EENENVTLSCRATGSPVP--KIKWIFKEKIIANI-SSGL-ANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ..|+.++|.|.+.|.-++  .+.|++++..+... .... ...+...|..     .+.|.+   ...+...|.|.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~-----~s~L~~---~~~~~~~ysC~V~H~~   83 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQI-----LVMLET---TPSRGDTYTCVVEHSS   83 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEE-----EEEEEE---cCCCCCEEEEEEEeCC
Confidence            468889999999984444  57999999875432 1111 1111222222     233443   3345558999997654

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.19  E-value=0.0026  Score=59.60  Aligned_cols=80  Identities=28%  Similarity=0.427  Sum_probs=49.1

Q ss_pred             eEEEecCCCCCccCCC--CCCCccEEEeecce-eC-hhhccCCcccCeeeccCCcccccCCcccccccccccccccccce
Q psy12695         48 ETVLCKAKNFTTIPEQ--LDVGTQVLDLSDNF-LD-RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI  123 (369)
Q Consensus        48 ~~~~c~~~~l~~ip~~--~~~~~~~L~l~~n~-i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l  123 (369)
                      ..++.+++.++.+|..  .+..+.+|++++|+ +. ...+.++.+|..|.+++|++..++ ..+..+.+|++|++++|.+
T Consensus       189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~-~~~~~l~~l~~L~~s~n~i  267 (394)
T COG4886         189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLP-ESIGNLSNLETLDLSNNQI  267 (394)
T ss_pred             hheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeecc-chhccccccceeccccccc
Confidence            4566677777777764  56667777777773 22 344556666666666666665542 2345566666666666666


Q ss_pred             ecccC
Q psy12695        124 QKITH  128 (369)
Q Consensus       124 ~~~~~  128 (369)
                      +.++.
T Consensus       268 ~~i~~  272 (394)
T COG4886         268 SSISS  272 (394)
T ss_pred             ccccc
Confidence            66654

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.17  E-value=0.022  Score=40.20  Aligned_cols=68  Identities=24%  Similarity=0.445  Sum_probs=40.7

Q ss_pred             ccCCeEEEEEEeeCC-CCC-eEEEEeCCeEeeeccccc-cc-CCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        158 EENENVTLSCRATGS-PVP-KIKWIFKEKIIANISSGL-AN-MNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ..++.++|.|.+.|. |.. .|.|++++..+....... .. .....|.+     .+.|.+.   ..+...|.|.+....
T Consensus         6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~-----~s~l~v~---~~~~~~ysC~V~H~~   77 (83)
T PF07654_consen    6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSV-----TSSLTVT---WNSGDEYSCRVTHES   77 (83)
T ss_dssp             HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEE-----EEEEEEE---TTTTGGEEEEEEETT
T ss_pred             cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceee-----eEEEEec---CCCCCEEEEEEEECC
Confidence            348999999999884 433 589999988764321110 00 12222322     3455555   444458999997654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.13  E-value=0.0065  Score=46.82  Aligned_cols=64  Identities=14%  Similarity=0.368  Sum_probs=25.5

Q ss_pred             ccEEEeecce--eChhhccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCcccc
Q psy12695         68 TQVLDLSDNF--LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFIN  133 (369)
Q Consensus        68 ~~~L~l~~n~--i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~  133 (369)
                      ++.+.+.++-  |...+|.++..|+.+.+.+ .+..++..+|.+..+|+.+++..| +..+....|.+
T Consensus        37 l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~  102 (129)
T PF13306_consen   37 LKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSN  102 (129)
T ss_dssp             -SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT
T ss_pred             cccccccccccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcC
Confidence            4444444332  3344455554455555533 444444445544445555554443 44444444443

>PLN03210 Resistant to P

Probab=96.09  E-value=0.011  Score=63.15  Aligned_cols=93  Identities=26%  Similarity=0.310  Sum_probs=58.4

Q ss_pred             eEEEecC-CCCCccCCCC-CCCccEEEeecceeChhhccCCcccCeeeccCCcccccCCcccccccccccccccc-ccee
Q psy12695         48 ETVLCKA-KNFTTIPEQL-DVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG-NPIQ  124 (369)
Q Consensus        48 ~~~~c~~-~~l~~ip~~~-~~~~~~L~l~~n~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~-N~l~  124 (369)
                      ..++..+ ++|..+|..+ +..++.|+|++|..-........+|+.|+|++|.|+.+|. .+..+++|+.|+|++ |.|.
T Consensus       805 ~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~-si~~l~~L~~L~L~~C~~L~  883 (1153)
T PLN03210        805 EHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPW-WIEKFSNLSFLDMNGCNNLQ  883 (1153)
T ss_pred             CEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChH-HHhcCCCCCEEECCCCCCcC
Confidence            4455544 3466666654 4567777777765221111223578888899999888876 467888899999987 6777


Q ss_pred             cccCCcccccCcCccccc
Q psy12695        125 KITHEAFINVPKLNLEDF  142 (369)
Q Consensus       125 ~~~~~~f~~l~~l~~~~~  142 (369)
                      .++.. ...+..|...++
T Consensus       884 ~l~~~-~~~L~~L~~L~l  900 (1153)
T PLN03210        884 RVSLN-ISKLKHLETVDF  900 (1153)
T ss_pred             ccCcc-cccccCCCeeec
Confidence            77643 344555544443

syringae 6; Provisional

>smart00370 LRR Leucine-rich repeats, outliers

Probab=96.03  E-value=0.0019  Score=34.36  Aligned_cols=23  Identities=39%  Similarity=0.580  Sum_probs=21.0

Q ss_pred             ccccccccccccceecccCCccc
Q psy12695        110 ILELRELKLSGNPIQKITHEAFI  132 (369)
Q Consensus       110 l~~L~~L~L~~N~l~~~~~~~f~  132 (369)
                      |.+|+.|+|++|.|+.+++++|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46899999999999999999886

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=96.03  E-value=0.0019  Score=34.36  Aligned_cols=23  Identities=39%  Similarity=0.580  Sum_probs=21.0

Q ss_pred             ccccccccccccceecccCCccc
Q psy12695        110 ILELRELKLSGNPIQKITHEAFI  132 (369)
Q Consensus       110 l~~L~~L~L~~N~l~~~~~~~f~  132 (369)
                      |.+|+.|+|++|.|+.+++++|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46899999999999999999886

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=96.00  E-value=0.045  Score=41.28  Aligned_cols=76  Identities=22%  Similarity=0.313  Sum_probs=44.6

Q ss_pred             eeeccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeecccc---cccCCcceEEEEeecceeeEEEcccCCCC-CEEEEEE
Q psy12695        155 VTAEENENVTLSCRATGSPVP--KIKWIFKEKIIANISSG---LANMNKRQYIIKTINSLSNLTIVAVTMSD-SGIYTCR  228 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~I~~v~~~D-~G~Y~C~  228 (369)
                      .....++.++|.|.+.|.-+.  .|.|++++..+......   ....+...|..     .+.|.+..-...+ ...|.|.
T Consensus        13 ~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~-----~S~L~v~~~~w~~~~~~ytC~   87 (115)
T cd05769          13 AEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSI-----SSRLRVSATEWFNPRNTFTCI   87 (115)
T ss_pred             HHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEE-----EEEEEEChHHhccCCCeEEEE
Confidence            334467789999999885444  68999999776532111   00111122322     4566766544334 4489999


Q ss_pred             EEeCCce
Q psy12695        229 AKNGAGE  235 (369)
Q Consensus       229 a~n~~g~  235 (369)
                      +......
T Consensus        88 V~H~g~~   94 (115)
T cd05769          88 VQFYGGT   94 (115)
T ss_pred             EEEeCCc
Confidence            8765443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=95.85  E-value=0.037  Score=40.06  Aligned_cols=68  Identities=19%  Similarity=0.287  Sum_probs=39.1

Q ss_pred             ccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeeccc--ccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        158 EENENVTLSCRATGSPVP--KIKWIFKEKIIANISS--GLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ..|+..+|.|.+.|.-+.  .+.|.++|..+.....  .....+...|..     .+.|.+..   .+...|.|.+.-..
T Consensus        13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~-----~s~L~v~~---~~~~~ytC~V~H~~   84 (94)
T cd05767          13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQK-----FSYLNFTP---EEGDIYSCIVEHWG   84 (94)
T ss_pred             cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEE-----EEEEEEEC---CCCCeEEEEEEeCC
Confidence            346668999999994443  5799999877543110  111112222322     23455543   44558999987643

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=95.82  E-value=0.047  Score=39.45  Aligned_cols=67  Identities=19%  Similarity=0.367  Sum_probs=39.0

Q ss_pred             ccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeeccccc-ccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        158 EENENVTLSCRATGSPVP--KIKWIFKEKIIANISSGL-ANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ..|+..+|.|.+.|.-++  .+.|+++|..+....... ...+...|..     ...|.+   ...+...|.|.+.-.
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~-----~s~l~~---~~~~~~~ysC~V~H~   82 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYL-----LKSTEF---TPTKGDEYACRVRHN   82 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEE-----EEEEEE---CCCCCCeEEEEEEEC
Confidence            456777999999995544  479999998764211111 1112222222     223333   345666899998764

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>KOG4597|consensus

Probab=95.78  E-value=0.017  Score=52.97  Aligned_cols=95  Identities=17%  Similarity=0.243  Sum_probs=68.6

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeC---CeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFK---EKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      +.+...|....+.+|++..++|.+.|.+.+.|.|-+.   +..+. .....   ...+   ........|.|-+....|+
T Consensus       197 c~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv-~~~nq---~~e~---p~vtstcql~ic~ewq~~a  269 (560)
T KOG4597|consen  197 CALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVV-MRPNQ---TVEN---PVVTSTCQLVICNEWQADA  269 (560)
T ss_pred             cccccCcchhhcccchhhcccccccCCcCceeeeehhhcccccee-ecCcc---ccCC---cceeeeeeEEEcchhhcCC
Confidence            3455556778889999999999999999999999763   21111 01000   0001   1123457899999999999


Q ss_pred             EEEEEEEEeCCceEEEEEEEEEeec
Q psy12695        223 GIYTCRAKNGAGEVFTNISLNVIKV  247 (369)
Q Consensus       223 G~Y~C~a~n~~g~~~~~~~l~v~~~  247 (369)
                      |.|+|.+.+..|...+.+.+.+...
T Consensus       270 ~w~tCs~rcg~g~~~rdv~c~s~~g  294 (560)
T KOG4597|consen  270 GWYTCSARCGAGFLRRDVPCSSVKG  294 (560)
T ss_pred             Cceeeccccccceeeccceeeeecc
Confidence            9999999999999999888877654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.72  E-value=0.019  Score=44.14  Aligned_cols=87  Identities=24%  Similarity=0.385  Sum_probs=54.9

Q ss_pred             ceEEEecCCCCCccCCCCCC---CccEEEeecce--eChhhccCCcccCeeeccCCcccccCCccccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQLDV---GTQVLDLSDNF--LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN  121 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~~~---~~~~L~l~~n~--i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N  121 (369)
                      .+.+...+ ++..++.....   .++.+.+.++-  +...+|...++|+.+++..| +..|+..+|.+. +|+.+.+.+ 
T Consensus        37 l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-  112 (129)
T PF13306_consen   37 LKSINFPN-NLTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-  112 (129)
T ss_dssp             -SEEEESS-TTSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-
T ss_pred             cccccccc-cccccceeeeecccccccccccccccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-
Confidence            34677755 58888876543   57888997643  77899999999999999887 889999999998 999999886 


Q ss_pred             ceecccCCcccccCcC
Q psy12695        122 PIQKITHEAFINVPKL  137 (369)
Q Consensus       122 ~l~~~~~~~f~~l~~l  137 (369)
                      .+..+..+.|.+-++|
T Consensus       113 ~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  113 NITKIEENAFKNCTKL  128 (129)
T ss_dssp             B-SS----GGG-----
T ss_pred             CccEECCccccccccC
Confidence            7888888899876544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=95.70  E-value=0.0057  Score=55.30  Aligned_cols=79  Identities=23%  Similarity=0.192  Sum_probs=51.3

Q ss_pred             ceEEEecCCCCCc-cCCC---CC--CCccEEEeecceeCh-------hhccCC-cccCeeeccCCcccccC----Ccccc
Q psy12695         47 KETVLCKAKNFTT-IPEQ---LD--VGTQVLDLSDNFLDR-------YTFRKL-INLVELDLSYNQIQFVP----SHILD  108 (369)
Q Consensus        47 ~~~~~c~~~~l~~-ip~~---~~--~~~~~L~l~~n~i~~-------~~f~~l-~~L~~L~Ls~N~l~~i~----~~~f~  108 (369)
                      .+.++.+++.+.. .+..   +.  ..++.|+|++|++..       ..+..+ ++|+.|+|++|.|+.-.    ...|.
T Consensus        83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  162 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR  162 (319)
T ss_pred             eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence            4567777777752 2211   12  248888888888762       245566 78888888888887211    22355


Q ss_pred             cccccccccccccceec
Q psy12695        109 SILELRELKLSGNPIQK  125 (369)
Q Consensus       109 ~l~~L~~L~L~~N~l~~  125 (369)
                      .+.+|+.|+|++|.++.
T Consensus       163 ~~~~L~~L~l~~n~l~~  179 (319)
T cd00116         163 ANRDLKELNLANNGIGD  179 (319)
T ss_pred             hCCCcCEEECcCCCCch
Confidence            56678888888888773

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.61  E-value=0.044  Score=40.00  Aligned_cols=70  Identities=14%  Similarity=0.209  Sum_probs=39.9

Q ss_pred             eccCCeEEEEEEeeCCC--C-CeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE-EEEEEEEeC
Q psy12695        157 AEENENVTLSCRATGSP--V-PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG-IYTCRAKNG  232 (369)
Q Consensus       157 ~~~G~~~~l~C~~~g~p--~-p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n~  232 (369)
                      ...++.++|.|.+.|.-  . ..|.|.++++. ..............|.+     .+.|.+.. ..-.+| .|.|.+...
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~-----~S~L~v~~-~~W~~g~~ytC~V~H~   88 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSV-----SSVLPGCA-EEWNKGEPFACTVTHP   88 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEE-----EEEEEeCH-HHhcCCCeEEEEEECC
Confidence            44688999999999854  2 35999998865 11111111112223332     34565542 222344 699998765


Q ss_pred             C
Q psy12695        233 A  233 (369)
Q Consensus       233 ~  233 (369)
                      .
T Consensus        89 ~   89 (99)
T cd04986          89 E   89 (99)
T ss_pred             C
Confidence            4

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=95.51  E-value=0.1  Score=37.89  Aligned_cols=74  Identities=18%  Similarity=0.271  Sum_probs=43.7

Q ss_pred             CCeeeccCCeEEE-EEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        153 PDVTAEENENVTL-SCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       153 ~~~~~~~G~~~~l-~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      ....+.+|+.+.+ .|.+ .|.|.+.|+|+.+.......  .........+.+     .+.+.+..-...|.-.++|.+.
T Consensus         9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~--~~~~~~ngT~TV-----~S~~~l~p~r~d~G~~vtC~V~   81 (97)
T cd07704           9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSES--HSQEHPNGTTTV-----TSEYIWVPSRHANGHPLTCVVS   81 (97)
T ss_pred             CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccce--eeecCCCCCEEE-----EEEEEEEeCHHHCCcEEEEEEe
Confidence            3456778898888 8987 68999999999763221110  000011112222     3456664444444448999997


Q ss_pred             eCC
Q psy12695        231 NGA  233 (369)
Q Consensus       231 n~~  233 (369)
                      ...
T Consensus        82 H~a   84 (97)
T cd07704          82 HPA   84 (97)
T ss_pred             Ccc
Confidence            764

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>KOG3207|consensus

Probab=95.45  E-value=0.005  Score=56.20  Aligned_cols=69  Identities=28%  Similarity=0.270  Sum_probs=34.4

Q ss_pred             ccCCCCCCCccEEEeecceeC-h---hhccCCcccCeeeccCCcccccCCccc------ccccccccccccccceeccc
Q psy12695         59 TIPEQLDVGTQVLDLSDNFLD-R---YTFRKLINLVELDLSYNQIQFVPSHIL------DSILELRELKLSGNPIQKIT  127 (369)
Q Consensus        59 ~ip~~~~~~~~~L~l~~n~i~-~---~~f~~l~~L~~L~Ls~N~l~~i~~~~f------~~l~~L~~L~L~~N~l~~~~  127 (369)
                      ..+..++..++.|+|++|++- -   .....|+.|..|+++.+.|.+|..-.-      ..+++|++|+++.|+|..+.
T Consensus       239 ~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~  317 (505)
T KOG3207|consen  239 ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR  317 (505)
T ss_pred             cchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence            334444555566666666522 1   223345555555666655555432111      23455666666666665443

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.34  E-value=0.11  Score=37.71  Aligned_cols=69  Identities=20%  Similarity=0.269  Sum_probs=38.2

Q ss_pred             cCCeEEEEEEeeCCCCC--eEEEEeCCeEeeeccc--ccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        159 ENENVTLSCRATGSPVP--KIKWIFKEKIIANISS--GLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       159 ~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      .++.++|.|.+.|.-+.  .|+|++++.. .....  .........|..     .+.|.+..-.-.....|.|.+....
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~-----~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTA-----SSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEE-----EEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            46679999999985443  4789999986 22110  001111222222     3445554332112447999997654

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=95.34  E-value=0.02  Score=53.74  Aligned_cols=25  Identities=20%  Similarity=0.217  Sum_probs=18.1

Q ss_pred             ceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        208 SLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       208 ~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      +.-.|.+.++..+++|.|.|++.-.
T Consensus       267 ~~~~l~f~~a~~~~sGLYv~V~~~n  291 (439)
T PF02480_consen  267 NGVDLQFTNAPESASGLYVFVVYYN  291 (439)
T ss_dssp             TSSSEEESS--GGG-EEEEEEEEET
T ss_pred             CCcceEecCCCcccCceEEEEEEEC
Confidence            3457999999999999999998543

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=95.26  E-value=0.0048  Score=55.76  Aligned_cols=58  Identities=34%  Similarity=0.385  Sum_probs=27.0

Q ss_pred             CccEEEeecceeC---hhhccCCcc---cCeeeccCCcccccC----Ccccccc-ccccccccccccee
Q psy12695         67 GTQVLDLSDNFLD---RYTFRKLIN---LVELDLSYNQIQFVP----SHILDSI-LELRELKLSGNPIQ  124 (369)
Q Consensus        67 ~~~~L~l~~n~i~---~~~f~~l~~---L~~L~Ls~N~l~~i~----~~~f~~l-~~L~~L~L~~N~l~  124 (369)
                      .++.|+|++|.+.   ...|..+..   |++|+|++|+++.-.    ...+..+ ++|+.|+|++|.++
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  150 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE  150 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence            4555555555543   223333333   566666655554200    1122333 45555666655555

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PHA03042 CD47-like protein; Provisional

Probab=95.22  E-value=0.39  Score=41.24  Aligned_cols=70  Identities=26%  Similarity=0.414  Sum_probs=45.5

Q ss_pred             CCeEEEEEEeeCC-----CCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695        160 NENVTLSCRATGS-----PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG  234 (369)
Q Consensus       160 G~~~~l~C~~~g~-----p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g  234 (369)
                      .+++.++|.+...     ..-.+.|..++..+-.....               +..+|.... ...-.|+|+|.|.+...
T Consensus        31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t---------------n~aSL~~~f-~~~l~GNYTCEv~~l~n   94 (286)
T PHA03042         31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT---------------NTSSLKFNF-SKNLSGNYTCEAINKFN   94 (286)
T ss_pred             CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC---------------cceEEEEec-cccCCCceeEEEeeccc
Confidence            6788999998652     34569999998776532211               123455433 33448999999988766


Q ss_pred             eEEEEEEEEEe
Q psy12695        235 EVFTNISLNVI  245 (369)
Q Consensus       235 ~~~~~~~l~v~  245 (369)
                      .....+.+.-.
T Consensus        95 ~gk~~IeLk~~  105 (286)
T PHA03042         95 KIKNTIELQYV  105 (286)
T ss_pred             CccEEEEEEEE
Confidence            55566666555

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.17  E-value=0.007  Score=28.54  Aligned_cols=17  Identities=35%  Similarity=0.530  Sum_probs=11.3

Q ss_pred             cccccccccccceeccc
Q psy12695        111 LELRELKLSGNPIQKIT  127 (369)
Q Consensus       111 ~~L~~L~L~~N~l~~~~  127 (369)
                      ++|+.|+|++|+|+.+|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            47999999999998764

...

>PHA02982 hypothetical protein; Provisional

Probab=95.06  E-value=0.1  Score=42.81  Aligned_cols=83  Identities=22%  Similarity=0.394  Sum_probs=55.5

Q ss_pred             CCeeeccCCeEEEEEEee-CCCCCeEEEEeCCeEeeec-cccccc---------CCcceEEEEeecceeeEEEcccCCCC
Q psy12695        153 PDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANI-SSGLAN---------MNKRQYIIKTINSLSNLTIVAVTMSD  221 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~L~I~~v~~~D  221 (369)
                      .++.+.+|+.+.|.|... +.-.....|+...+..... ..+...         .-+..+.+......++|+|.++..+.
T Consensus        32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N  111 (251)
T PHA02982         32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN  111 (251)
T ss_pred             hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence            456678899999999863 3334468898865433221 111100         11223455566778899999999999


Q ss_pred             CEEEEEEEEeCCce
Q psy12695        222 SGIYTCRAKNGAGE  235 (369)
Q Consensus       222 ~G~Y~C~a~n~~g~  235 (369)
                      .|-|+|.+....+.
T Consensus       112 ~GCYtc~~ks~~~k  125 (251)
T PHA02982        112 LGCFTCEAKDAEGK  125 (251)
T ss_pred             CCceEEEEecCCCc
Confidence            99999999886654

>KOG4658|consensus

Probab=95.04  E-value=0.025  Score=58.04  Aligned_cols=89  Identities=27%  Similarity=0.279  Sum_probs=68.0

Q ss_pred             eEEEecCCCCCccCCCC-CCCccEEEeecce-----eChhhccCCcccCeeeccCCc-ccccCCcccccccccccccccc
Q psy12695         48 ETVLCKAKNFTTIPEQL-DVGTQVLDLSDNF-----LDRYTFRKLINLVELDLSYNQ-IQFVPSHILDSILELRELKLSG  120 (369)
Q Consensus        48 ~~~~c~~~~l~~ip~~~-~~~~~~L~l~~n~-----i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~  120 (369)
                      +++...++.+..++... ...+++|-+..|.     +....|..++.|+.|||++|. +..+|. ..+.|-+||+|+|++
T Consensus       526 rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~  604 (889)
T KOG4658|consen  526 RRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSD  604 (889)
T ss_pred             eEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhhhhhhcccccC
Confidence            45666677777777654 2368999999985     455669999999999999885 777876 467899999999999


Q ss_pred             cceecccCCcccccCcCc
Q psy12695        121 NPIQKITHEAFINVPKLN  138 (369)
Q Consensus       121 N~l~~~~~~~f~~l~~l~  138 (369)
                      ..++.+|.+ +.+|..|.
T Consensus       605 t~I~~LP~~-l~~Lk~L~  621 (889)
T KOG4658|consen  605 TGISHLPSG-LGNLKKLI  621 (889)
T ss_pred             CCccccchH-HHHHHhhh
Confidence            999988864 44444443

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=95.01  E-value=0.13  Score=37.38  Aligned_cols=69  Identities=16%  Similarity=0.084  Sum_probs=38.6

Q ss_pred             eeccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeeccc--ccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        156 TAEENENVTLSCRATGSPVP--KIKWIFKEKIIANISS--GLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       156 ~~~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ....++.++|.|.+.|.-++  .++|.++|..+.....  .....+. .|..     .+.|.+..-.  ....|.|.+..
T Consensus        12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d-ty~~-----~S~L~vt~~~--~~~~ysC~V~H   83 (96)
T cd07697          12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND-VYST-----TSWLTVTKDS--LGKKFRCIYKH   83 (96)
T ss_pred             HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC-EEEE-----EEEEEECchh--CCCeEEEEEEE
Confidence            33446778999999995444  4799999976542211  1111111 3322     3345544321  22359999976


Q ss_pred             C
Q psy12695        232 G  232 (369)
Q Consensus       232 ~  232 (369)
                      .
T Consensus        84 ~   84 (96)
T cd07697          84 E   84 (96)
T ss_pred             C
Confidence            3

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=94.80  E-value=0.02  Score=30.29  Aligned_cols=18  Identities=56%  Similarity=0.670  Sum_probs=13.8

Q ss_pred             CcccCeeeccCCcccccC
Q psy12695         86 LINLVELDLSYNQIQFVP  103 (369)
Q Consensus        86 l~~L~~L~Ls~N~l~~i~  103 (369)
                      |.+|+.|+|++|+|+.|.
T Consensus         1 L~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        1 LTNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CCccCEEECCCCccceec
Confidence            467888888888887763

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.76  E-value=0.039  Score=51.04  Aligned_cols=67  Identities=16%  Similarity=0.242  Sum_probs=49.0

Q ss_pred             ceEEEecCCCCCccCCCCCCCccEEEeecce-eC--hhhccCCcccCeeeccCC-cccccCCcccccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQLDVGTQVLDLSDNF-LD--RYTFRKLINLVELDLSYN-QIQFVPSHILDSILELRELKLSGNP  122 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~-i~--~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N~  122 (369)
                      .+.++.+++.|+.+| .+|.+++.|.|++.. +.  ++.+  .++|+.|+|++| .|..+|.       +|+.|+|++|.
T Consensus        54 l~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-------sLe~L~L~~n~  123 (426)
T PRK15386         54 SGRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-------SVRSLEIKGSA  123 (426)
T ss_pred             CCEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-------ccceEEeCCCC
Confidence            357888888999999 599999999998744 32  3323  257999999998 7776654       46666677665


Q ss_pred             e
Q psy12695        123 I  123 (369)
Q Consensus       123 l  123 (369)
                      +
T Consensus       124 ~  124 (426)
T PRK15386        124 T  124 (426)
T ss_pred             C
Confidence            4

>KOG4658|consensus

Probab=94.75  E-value=0.012  Score=60.36  Aligned_cols=96  Identities=25%  Similarity=0.271  Sum_probs=72.4

Q ss_pred             eEEEecCCC--CCccCCCCC---CCccEEEeecce-eC--hhhccCCcccCeeeccCCcccccCCccccccccccccccc
Q psy12695         48 ETVLCKAKN--FTTIPEQLD---VGTQVLDLSDNF-LD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLS  119 (369)
Q Consensus        48 ~~~~c~~~~--l~~ip~~~~---~~~~~L~l~~n~-i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  119 (369)
                      +++-..++.  +..++..+.   +.+++|||++|. +.  |...++|-+|++|+|++..|+.+|.+ |..|..|.+|+|.
T Consensus       548 ~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~  626 (889)
T KOG4658|consen  548 RTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG-LGNLKKLIYLNLE  626 (889)
T ss_pred             ceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH-HHHHHhhheeccc
Confidence            344444454  666766443   468999999887 32  66778899999999999999999885 7899999999999


Q ss_pred             ccceecccCCcccccCcCccccccC
Q psy12695        120 GNPIQKITHEAFINVPKLNLEDFAC  144 (369)
Q Consensus       120 ~N~l~~~~~~~f~~l~~l~~~~~~c  144 (369)
                      .+.-....++....+++|....+.+
T Consensus       627 ~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  627 VTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             cccccccccchhhhcccccEEEeec
Confidence            8875555577777788777665544

>KOG2739|consensus

Probab=94.15  E-value=0.021  Score=48.73  Aligned_cols=75  Identities=27%  Similarity=0.357  Sum_probs=47.4

Q ss_pred             CCccEEEeecce--eChh---hccCCcccCeeeccCCcccccCC-cccccccccccccccccceecccC---CcccccCc
Q psy12695         66 VGTQVLDLSDNF--LDRY---TFRKLINLVELDLSYNQIQFVPS-HILDSILELRELKLSGNPIQKITH---EAFINVPK  136 (369)
Q Consensus        66 ~~~~~L~l~~n~--i~~~---~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~---~~f~~l~~  136 (369)
                      +.++.|.|+.|.  +..+   --..+++|++|+|++|+|..+.. .....+.+|..|+|.+++.+.+..   ..|.-+++
T Consensus        65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~  144 (260)
T KOG2739|consen   65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPS  144 (260)
T ss_pred             chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhh
Confidence            378889999984  3311   11245888999999998774221 113456678888888887766543   24555665


Q ss_pred             Cccc
Q psy12695        137 LNLE  140 (369)
Q Consensus       137 l~~~  140 (369)
                      |...
T Consensus       145 L~~L  148 (260)
T KOG2739|consen  145 LKYL  148 (260)
T ss_pred             hccc
Confidence            5443

>KOG3207|consensus

Probab=94.04  E-value=0.021  Score=52.22  Aligned_cols=44  Identities=25%  Similarity=0.280  Sum_probs=28.3

Q ss_pred             cCCcccCeeeccCCcccccCCcccccccccccccccccceeccc
Q psy12695         84 RKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT  127 (369)
Q Consensus        84 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~  127 (369)
                      ...++|+.|+|..|....+....+.-+..|++|||++|.+-..+
T Consensus       219 ~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~  262 (505)
T KOG3207|consen  219 LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD  262 (505)
T ss_pred             HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc
Confidence            35566677777777544444555566667777777777766655

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.93  E-value=0.063  Score=49.71  Aligned_cols=50  Identities=14%  Similarity=0.226  Sum_probs=34.3

Q ss_pred             ceEEEecC-CCCCccCCCCCCCccEEEeecc-eeChhhccCCcccCeeeccCCccc
Q psy12695         47 KETVLCKA-KNFTTIPEQLDVGTQVLDLSDN-FLDRYTFRKLINLVELDLSYNQIQ  100 (369)
Q Consensus        47 ~~~~~c~~-~~l~~ip~~~~~~~~~L~l~~n-~i~~~~f~~l~~L~~L~Ls~N~l~  100 (369)
                      .+.+...+ ++|+.+|..+|.+++.|+|++| +|..  +  ...|+.|+|+.|.+.
T Consensus        74 LtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~s--L--P~sLe~L~L~~n~~~  125 (426)
T PRK15386         74 LTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISG--L--PESVRSLEIKGSATD  125 (426)
T ss_pred             CcEEEccCCCCcccCCchhhhhhhheEccCcccccc--c--ccccceEEeCCCCCc
Confidence            45566554 6788889888999999999988 4431  1  134677777766643

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=93.86  E-value=0.034  Score=29.26  Aligned_cols=18  Identities=39%  Similarity=0.540  Sum_probs=14.4

Q ss_pred             cccCeeeccCCcccccCC
Q psy12695         87 INLVELDLSYNQIQFVPS  104 (369)
Q Consensus        87 ~~L~~L~Ls~N~l~~i~~  104 (369)
                      .+|+.|+.++|+|+.+|.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            357888888888888876

>KOG1480|consensus

Probab=93.03  E-value=0.056  Score=52.76  Aligned_cols=74  Identities=30%  Similarity=0.471  Sum_probs=56.2

Q ss_pred             CCCCeeeccCCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEE
Q psy12695        151 ITPDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA  229 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  229 (369)
                      .+....|..+..+++.|.. .+.|...+.|++++..+......            .......+.+..+...|.|.|+|.|
T Consensus       135 ~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~------------~~~~d~~li~~~arlsd~~nytc~a  202 (909)
T KOG1480|consen  135 SPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANV------------IRASDHNLIISQARLSDSGNYTCEA  202 (909)
T ss_pred             ChhhheecccccccccccCcccchhhhhhccccCCCCCccccc------------hhhhcCCccccchhhhhcccceeee
Confidence            4556678888899999987 78888899999998665531110            0112457899999999999999999


Q ss_pred             EeCCceE
Q psy12695        230 KNGAGEV  236 (369)
Q Consensus       230 ~n~~g~~  236 (369)
                      .|..+..
T Consensus       203 ~ni~~~r  209 (909)
T KOG1480|consen  203 TNIVAKR  209 (909)
T ss_pred             ehhhccc
Confidence            9988763

>KOG0473|consensus

Probab=93.01  E-value=0.0058  Score=51.24  Aligned_cols=83  Identities=30%  Similarity=0.335  Sum_probs=64.8

Q ss_pred             CCccCC-CC--CCCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCcc
Q psy12695         57 FTTIPE-QL--DVGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAF  131 (369)
Q Consensus        57 l~~ip~-~~--~~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f  131 (369)
                      +.++|- ++  ....+.|||+.|++-  ..-|+-+..|..|||+.|+|..+|.+ |..+..++.+++.+|.++..| -.|
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~p-~s~  107 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQP-KSQ  107 (326)
T ss_pred             hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhCC-ccc
Confidence            556662 22  346889999999965  44688999999999999999999886 677888999999999888886 467


Q ss_pred             cccCcCcccc
Q psy12695        132 INVPKLNLED  141 (369)
Q Consensus       132 ~~l~~l~~~~  141 (369)
                      ..++.+..++
T Consensus       108 ~k~~~~k~~e  117 (326)
T KOG0473|consen  108 KKEPHPKKNE  117 (326)
T ss_pred             cccCCcchhh
Confidence            7777765544

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=92.92  E-value=0.78  Score=33.25  Aligned_cols=69  Identities=26%  Similarity=0.335  Sum_probs=39.8

Q ss_pred             eccCCeEEEEEEeeC-CCC--CeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE-EEEEEEEe
Q psy12695        157 AEENENVTLSCRATG-SPV--PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG-IYTCRAKN  231 (369)
Q Consensus       157 ~~~G~~~~l~C~~~g-~p~--p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n  231 (369)
                      +.+|..+++.|.+.+ .|.  ..+.|++....+.+.+-......+     ........+++.. +.+|.| .|.|.|.=
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~k-----s~~~~~~~vtftp-treD~g~~fsC~A~L   84 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKK-----SLETKSLEVTFTP-TIEDIGKVLVCRAKL   84 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccC-----CCCCcceeEEEec-chhhCCcEEEEEEEE
Confidence            488999999999965 444  458999876555432211000000     0011123455544 477777 89999853

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=92.49  E-value=2.6  Score=29.40  Aligned_cols=34  Identities=29%  Similarity=0.408  Sum_probs=23.3

Q ss_pred             eEEEcccCCCCCEEEEEEE-EeCCceEEEEEEEEE
Q psy12695        211 NLTIVAVTMSDSGIYTCRA-KNGAGEVFTNISLNV  244 (369)
Q Consensus       211 ~L~I~~v~~~D~G~Y~C~a-~n~~g~~~~~~~l~v  244 (369)
                      ..........|+|.+.|.| .+..-.....+.+.|
T Consensus        44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            4556677789999999999 555544454555544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>KOG2982|consensus

Probab=92.27  E-value=0.062  Score=46.94  Aligned_cols=58  Identities=26%  Similarity=0.348  Sum_probs=40.8

Q ss_pred             CccEEEeecceeCh-----hhccCCcccCeeeccCCcccccCCccccccccccccccccccee
Q psy12695         67 GTQVLDLSDNFLDR-----YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ  124 (369)
Q Consensus        67 ~~~~L~l~~n~i~~-----~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~  124 (369)
                      .+..|||.+|.|+.     ....+||.|+.|+|+.|+|+..-...=..+.+|+.|-|+|..+.
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS  134 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence            57789999999873     23558999999999999987632211124457777777776554

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=92.21  E-value=0.055  Score=31.07  Aligned_cols=10  Identities=30%  Similarity=0.295  Sum_probs=3.8

Q ss_pred             ehhhHHHHHH
Q psy12695        261 ASLTTVVTII  270 (369)
Q Consensus       261 ~~~~~~v~~~  270 (369)
                      ++++++++++
T Consensus         7 aIIv~V~vg~   16 (38)
T PF02439_consen    7 AIIVAVVVGM   16 (38)
T ss_pred             hHHHHHHHHH
Confidence            3333333333

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>TIGR00864 PCC polycystin cation channel protein

Probab=92.21  E-value=0.054  Score=60.46  Aligned_cols=35  Identities=34%  Similarity=0.504  Sum_probs=22.3

Q ss_pred             eccCCcccccCCcccccccccccccccccceeccc
Q psy12695         93 DLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT  127 (369)
Q Consensus        93 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~  127 (369)
                      ||++|+|+.|++++|..|.+|+.|+|++|++.+-+
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC   35 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDC   35 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCcccccc
Confidence            46666666666666666666666666666665543

Note: this model has been restricted to the amino half because for technical reasons.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=92.06  E-value=0.26  Score=42.13  Aligned_cols=50  Identities=20%  Similarity=0.149  Sum_probs=35.5

Q ss_pred             CCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        173 PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       173 p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ..|.+.|..+++.....        ..+..+   ...|.|.+.+...+++|.|+|..+...
T Consensus        11 iDP~y~W~GP~g~~l~g--------n~~~nI---T~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSG--------NSYVNI---TETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCC--------CCeEEE---ccCceEEeeccccccCCceEEEEEEEe
Confidence            46889999876654421        112222   246789999999999999999986543

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03286 envelope glycoprotein E; Provisional

Probab=91.68  E-value=0.43  Score=43.90  Aligned_cols=32  Identities=25%  Similarity=0.430  Sum_probs=24.0

Q ss_pred             eEEEcccCCCCCEEEEEEEE-eCCceEEEEEEE
Q psy12695        211 NLTIVAVTMSDSGIYTCRAK-NGAGEVFTNISL  242 (369)
Q Consensus       211 ~L~I~~v~~~D~G~Y~C~a~-n~~g~~~~~~~l  242 (369)
                      .|.+.++..+++|.|.|++. |..-.+.....+
T Consensus       308 nL~f~nA~~s~SGLYVfVl~yNGH~eAWtYtlv  340 (492)
T PHA03286        308 SFRLANAQPTDAGLYVVVALYNGRPLAWTYVYL  340 (492)
T ss_pred             ceeecCCCcccCceEEEEEEECCcceeeeEEEE
Confidence            58899999999999999985 544445555443

>PTZ00370 STEVOR; Provisional

Probab=91.63  E-value=0.071  Score=46.00  Aligned_cols=32  Identities=19%  Similarity=0.498  Sum_probs=22.4

Q ss_pred             ehhhHHHHHHHHHHHHhheeeeeecccccchh
Q psy12695        261 ASLTTVVTIILTACFVVLCIILLKAKRKRYAD  292 (369)
Q Consensus       261 ~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~  292 (369)
                      -|+++.|.++++++++++++|.+|||++.|+.
T Consensus       257 ygiaalvllil~vvliilYiwlyrrRK~swkh  288 (296)
T PTZ00370        257 YGIAALVLLILAVVLIILYIWLYRRRKNSWKH  288 (296)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence            35666666677777777888877777777653

>TIGR01478 STEVOR variant surface antigen, stevor family

Probab=91.62  E-value=0.065  Score=46.09  Aligned_cols=31  Identities=29%  Similarity=0.568  Sum_probs=21.6

Q ss_pred             ehhhHHHHHHHHHHHHhheeeeeecccccch
Q psy12695        261 ASLTTVVTIILTACFVVLCIILLKAKRKRYA  291 (369)
Q Consensus       261 ~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~  291 (369)
                      -|+++.|.++++++++++++|.+|||++.|+
T Consensus       261 cgiaalvllil~vvliiLYiWlyrrRK~swk  291 (295)
T TIGR01478       261 YGIAALVLIILTVVLIILYIWLYRRRKKSWK  291 (295)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            3566666666777777788877777777664

This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.

>KOG1909|consensus

Probab=91.53  E-value=0.12  Score=46.10  Aligned_cols=58  Identities=26%  Similarity=0.251  Sum_probs=25.9

Q ss_pred             CccEEEeecceeCh-------hhccCCcccCeeeccCCcccc----cCCccccccccccccccccccee
Q psy12695         67 GTQVLDLSDNFLDR-------YTFRKLINLVELDLSYNQIQF----VPSHILDSILELRELKLSGNPIQ  124 (369)
Q Consensus        67 ~~~~L~l~~n~i~~-------~~f~~l~~L~~L~Ls~N~l~~----i~~~~f~~l~~L~~L~L~~N~l~  124 (369)
                      .++++...+|++..       .+|+..+.|+.+.++.|.|..    +-..+|..+++|+.|||.+|-++
T Consensus       158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            34455555555431       234444455555555554432    11223444455555555555443

>KOG2739|consensus

Probab=91.36  E-value=0.091  Score=44.96  Aligned_cols=60  Identities=28%  Similarity=0.366  Sum_probs=42.2

Q ss_pred             CccEEEeecceeCh-hhccCCcccCeeeccCC--cccc-cCCcccccccccccccccccceeccc
Q psy12695         67 GTQVLDLSDNFLDR-YTFRKLINLVELDLSYN--QIQF-VPSHILDSILELRELKLSGNPIQKIT  127 (369)
Q Consensus        67 ~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N--~l~~-i~~~~f~~l~~L~~L~L~~N~l~~~~  127 (369)
                      .++.|.+.+-.+.. ..|..|++|+.|+||.|  +++. ++..+ ..+++|+.|+|++|+|+-+.
T Consensus        44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~ls  107 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLS  107 (260)
T ss_pred             chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCcccccc
Confidence            34455555555443 45889999999999999  5443 43333 34599999999999988643

>KOG3515|consensus

Probab=91.21  E-value=0.28  Score=48.69  Aligned_cols=78  Identities=22%  Similarity=0.289  Sum_probs=47.9

Q ss_pred             eeeccCCeEEEEEEeeCCCC-CeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        155 VTAEENENVTLSCRATGSPV-PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~-p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ..+..|+.|.|.|.+.++|+ +++.|++.+....  .         ++.   ......|.......+.-+.|.|.+.|..
T Consensus        17 ~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~---------~~~---~~~~~~~~~~~~~~~~~~~~~c~a~ns~   82 (741)
T KOG3515|consen   17 VGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--G---------RYA---TIADPTLVTTGDVRDTVAELNCRAFNSV   82 (741)
T ss_pred             hhhccCCcceeeeecCCCCCCcceEEEecCcccc--c---------ccc---cccCCceeeecchhhhhhhhhhhhcccc
Confidence            37889999999999977665 4699999775433  0         000   0012345555555556667888887775


Q ss_pred             ceE-EEEEEEEEee
Q psy12695        234 GEV-FTNISLNVIK  246 (369)
Q Consensus       234 g~~-~~~~~l~v~~  246 (369)
                      |.. .....+.+..
T Consensus        83 ~~~~~~~~~l~v~~   96 (741)
T KOG3515|consen   83 GMPSRCPMILDVDY   96 (741)
T ss_pred             cCceecceeecccc
Confidence            552 3334444443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.59  E-value=0.14  Score=26.40  Aligned_cols=15  Identities=60%  Similarity=0.505  Sum_probs=9.4

Q ss_pred             cccCeeeccCCcccc
Q psy12695         87 INLVELDLSYNQIQF  101 (369)
Q Consensus        87 ~~L~~L~Ls~N~l~~  101 (369)
                      ++|+.|+|++|+|+.
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            567788888887664

...

>KOG2123|consensus

Probab=90.58  E-value=0.048  Score=47.16  Aligned_cols=71  Identities=28%  Similarity=0.290  Sum_probs=55.3

Q ss_pred             CccEEEeecceeChh-hccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCc-ccccCcCcc
Q psy12695         67 GTQVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEA-FINVPKLNL  139 (369)
Q Consensus        67 ~~~~L~l~~n~i~~~-~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~-f~~l~~l~~  139 (369)
                      ++..|++-+..|..- .-..++.|+.|.||-|+|+++.+  |..+.+|++|+|..|.|..+..-. +.++++|..
T Consensus        20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            345666666666654 34589999999999999999965  889999999999999999987643 346666543

>PHA03283 envelope glycoprotein E; Provisional

Probab=90.46  E-value=5.3  Score=37.85  Aligned_cols=32  Identities=28%  Similarity=0.342  Sum_probs=23.6

Q ss_pred             ceeeEEEcccCCCCCEEEEEEEE-eCCceEEEE
Q psy12695        208 SLSNLTIVAVTMSDSGIYTCRAK-NGAGEVFTN  239 (369)
Q Consensus       208 ~~~~L~I~~v~~~D~G~Y~C~a~-n~~g~~~~~  239 (369)
                      +.-.|.+.++..+++|.|.|++. |..-.+...
T Consensus       313 ~~v~L~f~nap~~~SGLYVfVv~yNgHveAW~Y  345 (542)
T PHA03283        313 NRVDLLFKNAPASASGLYVFVLLYNGHPEAWTY  345 (542)
T ss_pred             CCcceEeccCCcccCceEEEEEEECCeeeeeEE
Confidence            34579999999999999999985 443334443

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=90.21  E-value=0.2  Score=39.07  Aligned_cols=10  Identities=20%  Similarity=0.454  Sum_probs=3.9

Q ss_pred             eeeeeecccc
Q psy12695        279 CIILLKAKRK  288 (369)
Q Consensus       279 ~~~~~~~~~~  288 (369)
                      ++|++|+||+
T Consensus        71 f~~c~r~kkt   80 (154)
T PF04478_consen   71 FIFCIRRKKT   80 (154)
T ss_pred             eeEEEecccC
Confidence            3333344443

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=90.01  E-value=0.42  Score=28.07  Aligned_cols=6  Identities=0%  Similarity=0.191  Sum_probs=2.3

Q ss_pred             eeeeec
Q psy12695        280 IILLKA  285 (369)
Q Consensus       280 ~~~~~~  285 (369)
                      ++||||
T Consensus        33 ~~~~rR   38 (40)
T PF08693_consen   33 FFWYRR   38 (40)
T ss_pred             heEEec
Confidence            334443

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>KOG1026|consensus

Probab=89.94  E-value=0.42  Score=47.59  Aligned_cols=148  Identities=23%  Similarity=0.284  Sum_probs=87.3

Q ss_pred             eChhhccCCcccCeeeccCCc---ccccCCcccccccccccccccccceecccCCcccccCcCcccc-------ccCCCC
Q psy12695         78 LDRYTFRKLINLVELDLSYNQ---IQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLED-------FACSPN  147 (369)
Q Consensus        78 i~~~~f~~l~~L~~L~Ls~N~---l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~-------~~c~p~  147 (369)
                      +....|...+.|...+++.|.   +..++...+..+ .+..|.+.+|.........+..  .+....       ..|.-.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~~l~~~~~~~~~~~~~~~~~--~~~e~~~~~~~~~~~c~~~  176 (774)
T KOG1026|consen  100 SQPRAFHYNSRLRRDNLSTNDTGVLGSLSTNGFETL-SLTELSLVGNPFTCSCSIRWLD--RYREDGFCVPYRGLACLNF  176 (774)
T ss_pred             ecccceeccccccccccchhhhcccccccccccccc-ccchhhhccCCCCcchhhhHHh--hhcccCCCCCchhhHHHhh
Confidence            345677788888889999998   666666666665 4556666667777766554443  222222       222111


Q ss_pred             c------------------cCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecce
Q psy12695        148 I------------------RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL  209 (369)
Q Consensus       148 i------------------~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (369)
                      +                  ........+..|..+++.|.+.+.|.|.+.|+.......+.........            
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~------------  244 (774)
T KOG1026|consen  177 LSNGTVANESIQLCGEIENRIRAANLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR------------  244 (774)
T ss_pred             cCCceehhhhhhhhcchhhhhhhhhhhhcccchheeeeecccCCCcceeeecccccccCCCccccccc------------
Confidence            1                  0011245678899999999999999999999987654433221111000            


Q ss_pred             eeEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeec
Q psy12695        210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV  247 (369)
Q Consensus       210 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~  247 (369)
                       .......      .+.|.+.|..|.....+.+.+..+
T Consensus       245 -~~~~~~~------~~~c~~E~~~~~~~~~v~~~~~~p  275 (774)
T KOG1026|consen  245 -SECEVLE------NDLCIAENAVARSNPSILLVVDLP  275 (774)
T ss_pred             -ccceeee------chhhHHHHhhhhcCceeeeEEecc
Confidence             0000000      177888888777666666555443

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=89.11  E-value=1.8  Score=31.76  Aligned_cols=40  Identities=30%  Similarity=0.404  Sum_probs=30.2

Q ss_pred             ecceeeEEEcccCCCCCEEEEEEEEeCCceE-EEEEEEEEe
Q psy12695        206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEV-FTNISLNVI  245 (369)
Q Consensus       206 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~v~  245 (369)
                      ...+..|.|..++..|+|.|.-.+++..|.. ...+.+.|.
T Consensus        67 ~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   67 TSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             ETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             eccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            3456789999999999999999999999986 344555553

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF15102 TMEM154: TMEM154 protein family

Probab=88.83  E-value=0.47  Score=36.78  Aligned_cols=15  Identities=40%  Similarity=0.354  Sum_probs=5.6

Q ss_pred             HHHHhheeeeeeccc
Q psy12695        273 ACFVVLCIILLKAKR  287 (369)
Q Consensus       273 ~~~~~~~~~~~~~~~  287 (369)
                      +++++++++++||||
T Consensus        72 Ll~vV~lv~~~kRkr   86 (146)
T PF15102_consen   72 LLSVVCLVIYYKRKR   86 (146)
T ss_pred             HHHHHHheeEEeecc
Confidence            333333333333333

>PF15050 SCIMP: SCIMP protein

Probab=88.00  E-value=0.75  Score=33.98  Aligned_cols=8  Identities=0%  Similarity=0.177  Sum_probs=3.2

Q ss_pred             CCCccccc
Q psy12695        359 DKIDHEEN  366 (369)
Q Consensus       359 ~~~~~~~~  366 (369)
                      +-+++|+.
T Consensus       115 ePe~DYDD  122 (133)
T PF15050_consen  115 EPENDYDD  122 (133)
T ss_pred             Cccccccc
Confidence            33344443

>KOG3515|consensus

Probab=87.98  E-value=1.8  Score=43.18  Aligned_cols=77  Identities=23%  Similarity=0.400  Sum_probs=49.9

Q ss_pred             eeeccCCeEEEEEEe--eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        155 VTAEENENVTLSCRA--TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~--~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      .....+..+.+.|.+  .+.|.+.+.|..++.................. .......+.+.+...+.++.|.|+|.|.|.
T Consensus       107 ~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~-gss~t~~s~l~~~v~Rka~~g~~tC~A~nr  185 (741)
T KOG3515|consen  107 IFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGAL-GSSYTEPSLLKQTVSRKADNGNYTCPANNR  185 (741)
T ss_pred             hhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCccccccccc-CceeccccceeeEEEEecCCceeEcccccc
Confidence            345678889999965  46777789999988776654322111110000 000023456888888899999999999884

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=87.42  E-value=0.32  Score=35.25  Aligned_cols=12  Identities=17%  Similarity=0.227  Sum_probs=4.9

Q ss_pred             HHhheeeeeecc
Q psy12695        275 FVVLCIILLKAK  286 (369)
Q Consensus       275 ~~~~~~~~~~~~  286 (369)
                      +.++++|+.+||
T Consensus        83 v~~l~w~f~~r~   94 (96)
T PTZ00382         83 VGFLCWWFVCRG   94 (96)
T ss_pred             HHHHhheeEEee
Confidence            333444444443

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=87.38  E-value=0.4  Score=25.84  Aligned_cols=15  Identities=47%  Similarity=0.445  Sum_probs=11.2

Q ss_pred             cccCeeeccCCcccc
Q psy12695         87 INLVELDLSYNQIQF  101 (369)
Q Consensus        87 ~~L~~L~Ls~N~l~~  101 (369)
                      +.|++|||++|.|..
T Consensus         2 ~~L~~LdL~~N~i~~   16 (28)
T smart00368        2 PSLRELDLSNNKLGD   16 (28)
T ss_pred             CccCEEECCCCCCCH
Confidence            467888888888753

>PHA03052 Hypothetical protein; Provisional

Probab=86.77  E-value=3.7  Score=27.24  Aligned_cols=35  Identities=14%  Similarity=0.376  Sum_probs=27.4

Q ss_pred             CCCeeeccCCeEEEEEEee-CC--CCCeEEEEeCCeEe
Q psy12695        152 TPDVTAEENENVTLSCRAT-GS--PVPKIKWIFKEKII  186 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~-g~--p~p~i~W~~~~~~~  186 (369)
                      |..+.+..|..+++.|++. |.  ..+.+.|..++..+
T Consensus         4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            4677889999999999994 33  34568899888766

>PHA03189 UL14 tegument protein; Provisional

Probab=86.20  E-value=10  Score=33.31  Aligned_cols=21  Identities=29%  Similarity=0.604  Sum_probs=16.5

Q ss_pred             ccCCCCCEEEEEEEEeCCceE
Q psy12695        216 AVTMSDSGIYTCRAKNGAGEV  236 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n~~g~~  236 (369)
                      ++..+-+|+|.|+..|..+..
T Consensus       139 ~v~t~taG~Y~CvLrN~tHgl  159 (348)
T PHA03189        139 RVSTSTAGMYECVLRNETHGL  159 (348)
T ss_pred             EEEecccceEEEEecccccee
Confidence            455677999999999987554

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=86.14  E-value=1.1  Score=37.06  Aligned_cols=16  Identities=31%  Similarity=0.331  Sum_probs=9.5

Q ss_pred             CCCCCCCCCCCCcccc
Q psy12695        350 DTTRGPEPRDKIDHEE  365 (369)
Q Consensus       350 ~~~~~p~~~~~~~~~~  365 (369)
                      .++-+|.+++--.||.
T Consensus       144 pt~~~P~sPDLarHYk  159 (221)
T PF08374_consen  144 PTTFKPDSPDLARHYK  159 (221)
T ss_pred             CCCCCCCCcchhhhcc
Confidence            3455677776666553

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

>PHA03240 envelope glycoprotein M; Provisional

Probab=85.49  E-value=3.6  Score=34.00  Aligned_cols=71  Identities=18%  Similarity=0.175  Sum_probs=40.5

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCC-----------eEeeeccccccc--------CCcceEEEEeecceeeEEE
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKE-----------KIIANISSGLAN--------MNKRQYIIKTINSLSNLTI  214 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~-----------~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~L~I  214 (369)
                      .+++.+|++|+|.-.-.-.|...+.|+++.           ..+.........        ......  ...-.+++|.|
T Consensus        32 evt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i--~y~C~NstL~i  109 (258)
T PHA03240         32 EHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFI--LYECHNSTLII  109 (258)
T ss_pred             ecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCce--EEEeccceEEE
Confidence            456788999988533222456679999821           112222111100        011111  12234678999


Q ss_pred             cccCCCCCEEEE
Q psy12695        215 VAVTMSDSGIYT  226 (369)
Q Consensus       215 ~~v~~~D~G~Y~  226 (369)
                      .++..+|.|.|.
T Consensus       110 ~~vn~sd~~nYc  121 (258)
T PHA03240        110 AHLNLSDAGEYC  121 (258)
T ss_pred             EEEeecCcchhh
Confidence            999999999994

>KOG3763|consensus

Probab=85.48  E-value=0.33  Score=46.11  Aligned_cols=58  Identities=34%  Similarity=0.373  Sum_probs=40.3

Q ss_pred             CccEEEeecceeCh-hhcc----CCcccCeeeccCC--cccccCC-cccccccccccccccccceec
Q psy12695         67 GTQVLDLSDNFLDR-YTFR----KLINLVELDLSYN--QIQFVPS-HILDSILELRELKLSGNPIQK  125 (369)
Q Consensus        67 ~~~~L~l~~n~i~~-~~f~----~l~~L~~L~Ls~N--~l~~i~~-~~f~~l~~L~~L~L~~N~l~~  125 (369)
                      .+..|.|++|++-. .+++    ..++|+.|+||+|  .+..-.+ +-+.++ .|++|.|.||+|.+
T Consensus       219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~  284 (585)
T KOG3763|consen  219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCT  284 (585)
T ss_pred             ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCcccc
Confidence            57788999999542 2333    4588999999999  4443211 223444 69999999999864

>PHA03273 envelope glycoprotein C; Provisional

Probab=84.92  E-value=7.1  Score=36.45  Aligned_cols=18  Identities=22%  Similarity=0.566  Sum_probs=11.9

Q ss_pred             EEEeeCCCC--CeEEEEeCC
Q psy12695        166 SCRATGSPV--PKIKWIFKE  183 (369)
Q Consensus       166 ~C~~~g~p~--p~i~W~~~~  183 (369)
                      .|.+.=.|.  ..+.|+.++
T Consensus       357 VCtA~CVP~egV~l~W~v~D  376 (486)
T PHA03273        357 VCTAKCVPSTGVFVSWSVND  376 (486)
T ss_pred             EEecccccCCCeeEEEEccC
Confidence            466655554  568898766

>KOG1909|consensus

Probab=84.92  E-value=0.36  Score=43.21  Aligned_cols=95  Identities=21%  Similarity=0.159  Sum_probs=52.8

Q ss_pred             eEEEecCCCCC--ccCC---CC--CCCccEEEeecceeCh----------------hhccCCcccCeeeccCCcccccC-
Q psy12695         48 ETVLCKAKNFT--TIPE---QL--DVGTQVLDLSDNFLDR----------------YTFRKLINLVELDLSYNQIQFVP-  103 (369)
Q Consensus        48 ~~~~c~~~~l~--~ip~---~~--~~~~~~L~l~~n~i~~----------------~~f~~l~~L~~L~Ls~N~l~~i~-  103 (369)
                      +.++.++|.+.  .++.   -|  -.++++|.|.||.+.+                ..-..-++|+.+....|++..-+ 
T Consensus        95 ~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga  174 (382)
T KOG1909|consen   95 QKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA  174 (382)
T ss_pred             eEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH
Confidence            46777777664  2321   11  3467777777777432                11234456777777777775432 


Q ss_pred             ---Ccccccccccccccccccceec----ccCCcccccCcCccccc
Q psy12695        104 ---SHILDSILELRELKLSGNPIQK----ITHEAFINVPKLNLEDF  142 (369)
Q Consensus       104 ---~~~f~~l~~L~~L~L~~N~l~~----~~~~~f~~l~~l~~~~~  142 (369)
                         ..+|+..+.|+.+.+..|.|..    +-...|...++|...++
T Consensus       175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl  220 (382)
T KOG1909|consen  175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDL  220 (382)
T ss_pred             HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeec
Confidence               2346666777777777776643    11233445555544443

>KOG0473|consensus

Probab=84.85  E-value=0.042  Score=46.22  Aligned_cols=77  Identities=10%  Similarity=0.029  Sum_probs=62.6

Q ss_pred             eEEEecCCCCCccCCCC--CCCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCcccccccccccccccccce
Q psy12695         48 ETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI  123 (369)
Q Consensus        48 ~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l  123 (369)
                      +.++.+.+.+-.+-..+  -..+..|+|+.|+|.  +..|..+..+..+++.+|.++..|. +|..++.++.+++.+|.+
T Consensus        45 tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~-s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen   45 TVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPK-SQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             eeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCc-cccccCCcchhhhccCcc
Confidence            45777777765554433  345778999999975  7889999999999999999999876 689999999999999986


Q ss_pred             ec
Q psy12695        124 QK  125 (369)
Q Consensus       124 ~~  125 (369)
                      ..
T Consensus       124 ~~  125 (326)
T KOG0473|consen  124 FR  125 (326)
T ss_pred             hH
Confidence            54

>PHA03269 envelope glycoprotein C; Provisional

Probab=84.03  E-value=17  Score=34.27  Aligned_cols=20  Identities=20%  Similarity=0.438  Sum_probs=13.1

Q ss_pred             EEEeeCCCC--CeEEEEeCCeE
Q psy12695        166 SCRATGSPV--PKIKWIFKEKI  185 (369)
Q Consensus       166 ~C~~~g~p~--p~i~W~~~~~~  185 (369)
                      .|.+.-.|.  ..+.|+.++..
T Consensus       449 VCtA~CVP~~~V~l~WlVgD~p  470 (566)
T PHA03269        449 VCLAKCVPRGVVHFNWWINDIP  470 (566)
T ss_pred             EEecccccCCCceEEEEecCCC
Confidence            466655554  36899887654

>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known []

Probab=83.79  E-value=3.8  Score=31.59  Aligned_cols=9  Identities=44%  Similarity=0.944  Sum_probs=4.0

Q ss_pred             CCCCCCCCC
Q psy12695        331 PLVPPHPPP  339 (369)
Q Consensus       331 ~~~~~~~~~  339 (369)
                      .|.++.+.+
T Consensus       124 ~~~~d~PPp  132 (155)
T PF10873_consen  124 EYPPDLPPP  132 (155)
T ss_pred             cccCCCCcC
Confidence            344444433

>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5

Probab=83.16  E-value=0.37  Score=42.44  Aligned_cols=16  Identities=19%  Similarity=0.576  Sum_probs=0.0

Q ss_pred             EEEcccCCCCCEEEEEEE
Q psy12695        212 LTIVAVTMSDSGIYTCRA  229 (369)
Q Consensus       212 L~I~~v~~~D~G~Y~C~a  229 (369)
                      +.+.+++..-.|  .|..
T Consensus        95 f~V~svsv~~~G--~C~~  110 (290)
T PF05454_consen   95 FKVKSVSVIPIG--SCQD  110 (290)
T ss_dssp             ------------------
T ss_pred             CceeEEEEEEee--ccCC
Confidence            444455444333  3543

5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=82.93  E-value=26  Score=29.40  Aligned_cols=21  Identities=19%  Similarity=0.473  Sum_probs=13.8

Q ss_pred             EEEEeeCCCC--CeEEEEeCCeE
Q psy12695        165 LSCRATGSPV--PKIKWIFKEKI  185 (369)
Q Consensus       165 l~C~~~g~p~--p~i~W~~~~~~  185 (369)
                      ..|.+.-.|.  ..+.|..++..
T Consensus        94 AVC~A~CVP~~~v~l~W~v~d~~  116 (211)
T PF02124_consen   94 AVCTARCVPRGNVTLRWSVGDDP  116 (211)
T ss_pred             EEEEcceeeCCCeEEEEEECCcc
Confidence            3566665553  47999987754

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PHA03281 envelope glycoprotein E; Provisional

Probab=81.86  E-value=4.7  Score=38.28  Aligned_cols=35  Identities=29%  Similarity=0.273  Sum_probs=25.0

Q ss_pred             ceeeEEEcccCCCCCEEEEEEEE-eCCceEEEEEEE
Q psy12695        208 SLSNLTIVAVTMSDSGIYTCRAK-NGAGEVFTNISL  242 (369)
Q Consensus       208 ~~~~L~I~~v~~~D~G~Y~C~a~-n~~g~~~~~~~l  242 (369)
                      +...|.+.++..+++|.|.|++. |..-.+.....+
T Consensus       473 n~vdL~F~nApasaSGLYVfVl~yNGHVeAWtYtlv  508 (642)
T PHA03281        473 GGSALKFVDAAESLSGLYVFIIHFNGHVEAVAYTVV  508 (642)
T ss_pred             CCcceEeccCCcccCceEEEEEEECCeeeeeEEEEE
Confidence            34569999999999999999985 444344444433

>PHA03271 envelope glycoprotein C; Provisional

Probab=81.00  E-value=33  Score=31.79  Aligned_cols=20  Identities=15%  Similarity=0.536  Sum_probs=11.4

Q ss_pred             EEeeCCC-CCeEEEEeCCeEe
Q psy12695        167 CRATGSP-VPKIKWIFKEKII  186 (369)
Q Consensus       167 C~~~g~p-~p~i~W~~~~~~~  186 (369)
                      |.+.=.| ...+.|+.++...
T Consensus       367 CtA~CVP~gV~lrWlVgD~p~  387 (490)
T PHA03271        367 CTIECVPSGITVRWLVHDEPQ  387 (490)
T ss_pred             EeccccCCCcEEEEEecCCCC
Confidence            5544333 2368898776543

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=80.68  E-value=2.4  Score=31.92  Aligned_cols=26  Identities=23%  Similarity=0.331  Sum_probs=14.3

Q ss_pred             CCEEEEEEEEeC-CceEEEEEEEEEee
Q psy12695        221 DSGIYTCRAKNG-AGEVFTNISLNVIK  246 (369)
Q Consensus       221 D~G~Y~C~a~n~-~g~~~~~~~l~v~~  246 (369)
                      |...|.|.-.+. .|..-..+.|....
T Consensus        63 dl~~~~CrC~~GYtGeRCEh~dLl~~~   89 (139)
T PHA03099         63 DIDGMYCRCSHGYTGIRCQHVVLVDYQ   89 (139)
T ss_pred             cCCCceeECCCCcccccccceeeeeee
Confidence            334578876544 46555555654443

>PF15096 G6B: G6B family

Probab=80.57  E-value=6.4  Score=31.75  Aligned_cols=19  Identities=26%  Similarity=0.587  Sum_probs=14.5

Q ss_pred             eeeccCCeEEEEEEeeCCC
Q psy12695        155 VTAEENENVTLSCRATGSP  173 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p  173 (369)
                      +....|+.|+|.|...+.|
T Consensus         6 LeGrPGDRVnlSCvGVs~p   24 (224)
T PF15096_consen    6 LEGRPGDRVNLSCVGVSHP   24 (224)
T ss_pred             ccCCCCCeeeeeeccCCCc
Confidence            4567899999999765554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	369
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		3e-11
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		6e-11
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		7e-11
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		7e-10
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		7e-10
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		9e-10
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		6e-09
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		1e-08
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		6e-08
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		6e-08
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		6e-08
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		3e-07
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		4e-07
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		9e-07
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		9e-07
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		1e-06
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		1e-06
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		7e-04
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		1e-06
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		2e-06
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		2e-06
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		2e-06
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		2e-06
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-06
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-04
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		3e-06
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		2e-05
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		3e-06
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		3e-06
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		4e-06
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		4e-06
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		5e-06
3qqn_A	137	The Retinal Specific Cd147 Ig0 Domain: From Molecul		5e-06
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		8e-06
3qr2_A	137	Wild Type Cd147 Ig0 Domain Length = 137		9e-06
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		1e-05
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		1e-05
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		1e-05
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		1e-05
3kld_A	384	Ptprg Cntn4 Complex Length = 384		1e-05
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		1e-05
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		2e-05
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		2e-05
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		3e-05
1f97_A	212	Soluble Part Of The Junction Adhesion Molecule From		3e-05
3s97_C	201	Ptprz Cntn1 Complex Length = 201		3e-05
2wp3_T	102	Crystal Structure Of The Titin M10-Obscurin Like 1		5e-05
3knb_A	100	Crystal Structure Of The Titin C-Terminus In Comple		5e-05
2yr3_A	99	Solution Structure Of The Fourth Ig-Like Domain Fro		9e-05
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		1e-04
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		2e-04
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		2e-04
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		2e-04
1u2h_A	99	X-Ray Structure Of The N-Terminally Truncated Human		2e-04
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		3e-04
2ifg_A	347	Structure Of The Extracellular Segment Of Human Trk		4e-04
3twi_D	179	Variable Lymphocyte Receptor Recognition Of The Imm		4e-04
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		4e-04
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		5e-04
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		5e-04
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		5e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		6e-04
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		7e-04
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		7e-04
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		9e-04

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 60/123 (48%), Gaps = 14/123 (11%)
Query: 33  AECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF---LDRYTFRKLINL 89
           + CPS C C       TV C  K+  ++P  +   TQVL L DN    L+   F +L  L
Sbjct: 9   SACPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQL 64
Query: 90  VELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL-------NLEDF 142
             LDL  NQ+  +P+ + D + +L +L L+ N ++ I   AF N+  L       N  D 
Sbjct: 65  TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 124
Query: 143 ACS 145
           ACS
Sbjct: 125 ACS 127

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF---LDRYTFRKLINLVE 91
           CPS C C       TV C  K+  ++P  +   TQVL L DN    L+   F +L  L  
Sbjct: 3   CPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTR 58
Query: 92  LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL-------NLEDFAC 144
           LDL  NQ+  +P+ + D + +L +L L+ N ++ I   AF N+  L       N  D AC
Sbjct: 59  LDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118
Query: 145 S 145
           S
Sbjct: 119 S 119

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 14/121 (11%)
Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF---LDRYTFRKLINLVE 91
           CPS C C       TV C  K+  ++P  +   TQVL L DN    L+   F +L  L  
Sbjct: 3   CPSQCSCS----GTTVDCSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTR 58
Query: 92  LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL-------NLEDFAC 144
           LDL  NQ+  +P+ + D + +L +L L+ N ++ I   AF N+  L       N  D AC
Sbjct: 59  LDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCAC 118
Query: 145 S 145
           S
Sbjct: 119 S 119

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           + TAE  E +T SCRA+GSP P I W    K+I             +YI+K  N  + LT
Sbjct: 13  NATAERGEEMTFSCRASGSPEPAISWFRNGKLIE---------ENEKYILKGSN--TELT 61
Query: 214 IVAVTMSDSGIYTCRAKNGAGE 235
           +  +  SD G Y CRA N AGE
Sbjct: 62  VRNIINSDGGPYVCRATNKAGE 83

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           + TAE  E +T SCRA+GSP P I W    K+I             +YI+K  N  + LT
Sbjct: 107 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIE---------ENEKYILKGSN--TELT 155
Query: 214 IVAVTMSDSGIYTCRAKNGAGE 235
           +  +  SD G Y CRA N AGE
Sbjct: 156 VRNIINSDGGPYVCRATNKAGE 177

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           + TAE  E +T SCRA+GSP P I W    K+I             +YI+K  N  + LT
Sbjct: 203 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIE---------ENEKYILKGSN--TELT 251
Query: 214 IVAVTMSDSGIYTCRAKNGAGE 235
           +  +  SD G Y CRA N AGE
Sbjct: 252 VRNIINSDGGPYVCRATNKAGE 273

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI-FKEKIIANISSGLANMNKRQYII 203
           +P IR    DVT +  E   LSC+  G P+P IKW  F +++I +          R+Y +
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQS----------RKYKM 56
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL 242
            +      LT++     D G+YTC A N  GEV T+  L
Sbjct: 57  SSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKL 95

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 33  AECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF---LDRYTFRKLINL 89
           A CPS C C       TV C++K   ++P  +    Q+L L DN    L+   F  LINL
Sbjct: 11  AACPSQCSCS----GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINL 66
Query: 90  VELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFAC 144
            EL L  NQ+  +P  + DS+ +L  L L  N +  +    F  +  L  E F C
Sbjct: 67  KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK-ELFMC 120

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLVE 91
           C +   C    GK+ V C+ K+  ++P  +   T+ LDL    L      TFR L  L  
Sbjct: 4   CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTW 63
Query: 92  LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLN 138
           L+L YNQ+Q + + + D + EL  L L+ N +  +    F ++ +L+
Sbjct: 64  LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD 110

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 8/108 (7%)
Query: 34  ECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYT----FRKLINL 89
           +CP+ C C+      TV C  +    IP  + + T  L L+DN L R +    F +L +L
Sbjct: 1   DCPAMCHCE----GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHL 56
Query: 90  VELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
           V+L+L  NQ+  +  +  +    ++EL+L  N I++I+++ F+ + +L
Sbjct: 57  VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQL 104

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLVE 91
           C +   C    GK+ V C+ K+  ++P  +   T+ LDL    L      TFR L  L  
Sbjct: 4   CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTW 63
Query: 92  LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLN 138
           L+L YNQ+Q + + + D + EL  L L+ N +  +    F ++ +L+
Sbjct: 64  LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD 110

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKR----QY 201
           P IR    + T E   +V L C A G+P P+I W    K IAN        N R    QY
Sbjct: 430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN--------NDRYQVGQY 481
Query: 202 IIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVA 261
           +    + +S L I +V  +D G+Y C AK+  G    +  LNV  +   + Q +   +VA
Sbjct: 482 VTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPY-IRQMEKKAIVA 540
Query: 262 SLTTVVT 268
             T +VT
Sbjct: 541 GETLIVT 547

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 31/130 (23%)
Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL--------DRYT---- 82
           CPS C C       TV C ++  T++P  +   T  LDL  N L        D  T    
Sbjct: 1   CPSRCSCS----GTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQ 56
Query: 83  ---------------FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
                          F KL +L  L+LS NQ+Q +P+ + D + +L+EL L+ N +Q + 
Sbjct: 57  LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116
Query: 128 HEAFINVPKL 137
              F  + +L
Sbjct: 117 DGVFDKLTQL 126

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 79/208 (37%), Gaps = 38/208 (18%)
Query: 70  VLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI------ 123
           V++   + ++R  F  L +LVEL+L++N +  +P  +   +  L EL L  NP       
Sbjct: 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308
Query: 124 ---------------------QKITHEAFINVPKLNLEDFACS-PNIRPITPDVTAEENE 161
                                    H     + +++   F CS P I     D+   E  
Sbjct: 309 LWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGR 368
Query: 162 NVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD 221
              L CR    P+  +KW+     + + +S       R   I  +N    L    V +SD
Sbjct: 369 MAELKCRT--PPMSSVKWLLPNGTVLSHAS-------RHPRISVLND-GTLNFSHVLLSD 418
Query: 222 SGIYTCRAKNGAGEVFTNISLNVIKVET 249
           +G+YTC   N AG    +  LNV    T
Sbjct: 419 TGVYTCMVTNVAGNSNASAYLNVSTAGT 446

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 49  TVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSH 105
           T  C+  NF  IP+ L   T+ LDLS N    L  Y+F     L  LDLS  +IQ +   
Sbjct: 12  TYQCEELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 71
Query: 106 ILDSILELRELKLSGNPIQKITHEAFINVPKL 137
              S+  L  L L+GNPIQ +   AF  +  L
Sbjct: 72  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 103

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 40  ECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLVELDLSY 96
           +C  K G  T  C+      IP+ L   T+VL+ S NFL      TF +LINL+ LDL+ 
Sbjct: 6   KCTEKEGNRTYNCENLGLREIPDTLPNTTEVLEFSFNFLPTIQNTTFSRLINLIFLDLTR 65
Query: 97  NQIQFVPSHILDSILELRELKLSGNPI 123
            QI +V      S  +L  + L+GNP+
Sbjct: 66  CQINWVHEDTFQSHHQLNTIVLTGNPL 92

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVE 91
           CP  CEC  +     VLC  K F  +PE +   T++LDL  N    L++  F    +L E
Sbjct: 3   CPPRCECSAQ--DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEE 60
Query: 92  LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFA 143
           L+L+ N +  V     +++  LR L L  N ++ I    F  +  L   D +
Sbjct: 61  LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 67/185 (36%), Gaps = 40/185 (21%)
Query: 81  YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI----------------- 123
           Y FR L  L  L++S NQ+  +   +  S+  L  L L  NP+                 
Sbjct: 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLN 349
Query: 124 -----------QKITHEAFINVPKLNLED-FACS-PNIRP-ITPDVTAEENENVTLSCRA 169
                      + +  + F + P + L + F C    IR      V  +E   V   CRA
Sbjct: 350 FNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRA 409
Query: 170 TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA 229
            G P P I W+   K + +  S     N R     T+     L +    + D+G Y C A
Sbjct: 410 DGDPPPAILWLSPRKHLVSAKS-----NGRL----TVFPDGTLEVRYAQVQDNGTYLCIA 460
Query: 230 KNGAG 234
            N  G
Sbjct: 461 ANAGG 465

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 33  AECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF---LDRYTFRKLINL 89
           A CPS C C     +  V C+     ++P  +    Q L L++N    L+   F  L+NL
Sbjct: 4   AGCPSQCSCD----QTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNL 59
Query: 90  VELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
            +L  + N++  +P+ + D + +L +L L+ N ++ I   AF N+  L
Sbjct: 60  QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSL 107

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 49  TVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSH 105
           T  C   NF  IP+ L   T+ LDLS N    L  Y+F     L  LDLS  +IQ +   
Sbjct: 12  TYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 71
Query: 106 ILDSILELRELKLSGNPIQKITHEAFINVPKL 137
              S+  L  L L+GNPIQ +   AF  +  L
Sbjct: 72  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 103

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 49  TVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSH 105
           T  C   NF  IP+ L   T+ LDLS N    L  Y+F     L  LDLS  +IQ +   
Sbjct: 13  TYQCMELNFYKIPDNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 72
Query: 106 ILDSILELRELKLSGNPIQKITHEAFINVPKL 137
              S+  L  L L+GNPIQ +   AF  +  L
Sbjct: 73  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 104

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 49  TVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSH 105
           T  C   NF  IP+ L   T+ LDLS N    L  Y+F     L  LDLS  +IQ +   
Sbjct: 13  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 72
Query: 106 ILDSILELRELKLSGNPIQKITHEAFINVPKL 137
              S+  L  L L+GNPIQ +   AF  +  L
Sbjct: 73  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 104

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 49  TVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSH 105
           T  C   NF  IP+ L   T+ LDLS N    L  Y+F     L  LDLS  +IQ +   
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 106 ILDSILELRELKLSGNPIQKITHEAFINVPKL 137
              S+  L  L L+GNPIQ +   AF  +  L
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 29/136 (21%)
Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD----------RY--- 81
           CP+ C C  +  +  V+C  +    +P  + V T+ L+L +N +           R+   
Sbjct: 6   CPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEI 63
Query: 82  --------------TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
                          F  L +L  L+L  N++  VP+   + + +LREL L  NPI+ I 
Sbjct: 64  LQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIP 123
Query: 128 HEAFINVPKLNLEDFA 143
             AF  VP L   D  
Sbjct: 124 SYAFNRVPSLRRLDLG 139

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 75/196 (38%), Gaps = 39/196 (19%)
Query: 78  LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ------------- 124
           ++R  F  L +L EL+LS+N +  +P  +   +  L  + L+ NP               
Sbjct: 217 IERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLK 276
Query: 125 -----KITHEAFINVP---------KLNLEDFAC-SPNIRPITPDVTAEENENVTLSCRA 169
                  T  A  + P         +L+   F C +P I     D+   E     L CR 
Sbjct: 277 ETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTCYAPVIVEPPTDLNVTEGMAAELKCR- 335
Query: 170 TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK-TINSLSNLTIVAVTMSDSGIYTCR 228
           TG+ +  + W+     +         M    Y ++ ++     L    VT+ D+G YTC 
Sbjct: 336 TGTSMTSVNWLTPNGTL---------MTHGSYRVRISVLHDGTLNFTNVTVQDTGQYTCM 386
Query: 229 AKNGAGEVFTNISLNV 244
             N AG    + +LNV
Sbjct: 387 VTNSAGNTTASATLNV 402

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 32/145 (22%)
Query: 26  TGCLQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD------ 79
           TG  Q    CPS C C  +  K  V+C  KN   +P+ +   T++L+L +N +       
Sbjct: 29  TGSAQT---CPSVCSCSNQFSK--VICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNS 83
Query: 80  ----RY-----------------TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKL 118
               R+                  F  L NL  L+L  N++  +P+     + +L+EL L
Sbjct: 84  FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143
Query: 119 SGNPIQKITHEAFINVPKLNLEDFA 143
             NPI+ I   AF  +P L   D  
Sbjct: 144 RNNPIESIPSYAFNRIPSLRRLDLG 168

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 39/196 (19%)
Query: 78  LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP-------------IQ 124
           ++R  F  L +LVE++L++N +  +P  +   +  L  + L  NP             I+
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIK 305
Query: 125 KITHE-----AFINVP---------KLNLEDFAC-SPNIRPITPDVTAEENENVTLSCRA 169
            +        A  N P         +L+   F C +P I     D+   E     L CRA
Sbjct: 306 DMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRA 365
Query: 170 TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK-TINSLSNLTIVAVTMSDSGIYTCR 228
           + S +  + WI     +         M    Y ++  + S   L    VT+ D+G+YTC 
Sbjct: 366 STS-LTSVSWITPNGTV---------MTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCM 415
Query: 229 AKNGAGEVFTNISLNV 244
             N  G    + +LNV
Sbjct: 416 VSNSVGNTTASATLNV 431

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 49  TVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSH 105
           T  C   NF  IP+ L   T+ LDLS N    L  Y+F     L  LDLS  +IQ +   
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 106 ILDSILELRELKLSGNPIQKITHEAFINVPKL 137
              S+  L  L L+GNPIQ +   AF  +  L
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 19/112 (16%)
Query: 45  GGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYT-------------------FRK 85
           G K   +   K  T +   +  G Q+  L +   D+ T                   F K
Sbjct: 72  GNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131
Query: 86  LINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
           L NL  L+L++NQ+Q +P  + D +  L EL LS N +Q +    F  + +L
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 49  TVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSH 105
           T  C   NF  IP+ L   T+ LDLS N    L  Y+F     L  LDLS  +IQ +   
Sbjct: 35  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 94
Query: 106 ILDSILELRELKLSGNPIQKITHEAFINVPKL 137
              S+  L  L L+GNPIQ +   AF  +  L
Sbjct: 95  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 29/136 (21%)
Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD----------RY--- 81
           CP+ C C  +  +  V+C  +    +P  + V T+ L+L +N +           R+   
Sbjct: 6   CPAACSCSNQASR--VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEI 63
Query: 82  --------------TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
                          F  L +L  L+L  N++  VP+   + + +LREL L  NPI+ I 
Sbjct: 64  LQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIP 123
Query: 128 HEAFINVPKLNLEDFA 143
             AF  VP L   D  
Sbjct: 124 SYAFNRVPSLRRLDLG 139

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 49  TVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSH 105
           T  C   NF  IP+ L   T+ LDLS N    L  Y+F     L  LDLS  +IQ +   
Sbjct: 11  TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 106 ILDSILELRELKLSGNPIQKITHEAFINVPKL 137
              S+  L  L L+GNPIQ +   AF  +  L
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102

>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular Structure To Biological Activity Length = 137

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 162 NVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNK--RQYIIKTI--NSLSNLTIVAV 217
           +V L C A GSPVP+I+W F+ +   +I S L +  +  R +I  T   ++ S ++I  +
Sbjct: 38  SVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAASTISIDTL 97
Query: 218 TMSDSGIYTCRAKN 231
              D+G Y CRA N
Sbjct: 98  VEEDTGTYECRASN 111

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 143 ACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYI 202
           A +P+ +    ++      N TL C+ TG P P +KW  + K I  I+ GL      +Y 
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEI--IADGL------KYR 53
Query: 203 IKTI-NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           I+        L I +VT  D+ +Y  RA N  G V    SL V
Sbjct: 54  IQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEV 96

>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain Length = 137

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 162 NVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNK--RQYIIKTI--NSLSNLTIVAV 217
           +V L C A GSPVP+I+W F+ +   +I S L +  +  R +I  T   ++ S ++I  +
Sbjct: 38  SVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL 97
Query: 218 TMSDSGIYTCRAKN 231
              D+G Y CRA N
Sbjct: 98  VEEDTGTYECRASN 111

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT 218
           E    T     +G PVP++ W    ++I+  +S L  +      I   +  + LTI AVT
Sbjct: 19  EGSTATFEAHISGFPVPEVSWFRDGQVIS--TSTLPGVQ-----ISFSDGRAKLTIPAVT 71
Query: 219 MSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
            ++SG Y+ +A NG+G+  +   L ++K ETA
Sbjct: 72  KANSGRYSLKATNGSGQATSTAEL-LVKAETA 102

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT 218
           E    T     +G PVP++ W    ++I+  +S L  +      I   +  + LTI AVT
Sbjct: 19  EGSTATFEAHISGFPVPEVSWFRDGQVIS--TSTLPGVQ-----ISFSDGRAKLTIPAVT 71
Query: 219 MSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
            ++SG Y+ +A NG+G+  +   L ++K ETA
Sbjct: 72  KANSGRYSLKATNGSGQATSTAEL-LVKAETA 102

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 143 ACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYI 202
           A +P+ +    ++      N TL C+ TG P P +KW  + K I  I+ GL      +Y 
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEI--IADGL------KYR 53
Query: 203 IKTI-NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           I+        L I +VT  D+ +Y  RA N  G V    SL V
Sbjct: 54  IQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEV 96

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 10/134 (7%)
Query: 54  AKNFTTIPEQLDVGTQV--LDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILD 108
              FT +P++L     +  +DLS+N    L   +F  +  L+ L LSYN+++ +P    D
Sbjct: 40  GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99
Query: 109 SILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSP-----NIRPITPDVTAEENENV 163
            +  LR L L GN I  +   AF ++  L+      +P     N++ ++  V +E  E  
Sbjct: 100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPG 159
Query: 164 TLSCRATGSPVPKI 177
              C   G    K+
Sbjct: 160 IARCAGPGEMADKL 173

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 14/113 (12%)
Query: 133 NVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSG 192
           NV K  L  F   PN   I  D+     E+V   C+A G P P  +W+          +G
Sbjct: 284 NVAKGQL-TFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWL---------KNG 333
Query: 193 LANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
              + + +  I+       L I  V +SD+G+Y C A+N  G +F++  L+VI
Sbjct: 334 DPLLTRDRIQIEQ----GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 14/113 (12%)
Query: 133 NVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSG 192
           NV K  L  F   PN   I  D+     E+V   C+A G P P  +W+          +G
Sbjct: 283 NVAKGQL-TFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWL---------KNG 332
Query: 193 LANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
              + + +  I+       L I  V +SD+G+Y C A+N  G +F++  L+VI
Sbjct: 333 DPLLTRDRIQIEQ----GTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 381

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 41  CKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLVELDLSYN 97
           C  K   +T  C+    + IP+ L   T+ L+ S NFL      TF +L+NL  LDL+  
Sbjct: 5   CIEKEANKTYNCENLGLSEIPDTLPNTTEFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRC 64
Query: 98  QIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPK 136
           QI ++      S  +L  L L+GNP+  +  E  +N PK
Sbjct: 65  QINWIHEDTFQSHHQLSTLVLTGNPLIFMA-ETSLNGPK 102

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
           +P+ +    ++      N TL C+ TG P P +KW  + K I  I+ GL      +Y I+
Sbjct: 2   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEI--IADGL------KYRIQ 53
Query: 205 TI-NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
                   L I +VT  D+ +Y  RA N  G V    SL V
Sbjct: 54  EFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEV 94

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           D+T +E +   + C+ +G P P + W    K +   S+        + +++  N + +L 
Sbjct: 18  DLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSA-------HKMLVRE-NGVHSLI 69
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
           I  VT  D+GIYTC A N AG+   ++ L V   E+ 
Sbjct: 70  IEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106

>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse Length = 212

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKR---QYIIKTINSLS 210
           DV   ENE++ L+C  +G   P+++W    K +   ++ L   N +    Y  +   S S
Sbjct: 10  DVQVPENESIKLTCTYSGFSSPRVEW----KFVQGSTTALVCYNSQITAPYADRVTFSSS 65
Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
            +T  +VT  D+G YTC      G+ +  +S+++
Sbjct: 66  GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL 99

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 13/82 (15%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           DV A   +NVTL C A G+PVP I+W    K++  + S  A ++    ++K  N      
Sbjct: 122 DVYALMGQNVTLECFALGNPVPDIRW---RKVLEPMPS-TAEISTSGAVLKIFN------ 171
Query: 214 IVAVTMSDSGIYTCRAKNGAGE 235
              + + D GIY C A+N  G+
Sbjct: 172 ---IQLEDEGIYECEAENIRGK 190

>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig Complex Length = 102

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P I  +  D++ +E + +T++C  TG P P++ W    + I +   G       ++ I+ 
Sbjct: 8   PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQG-------RFHIEN 60
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
            + L+ L I+ V   D G+YT    N  G     +++++
Sbjct: 61  TDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 99

>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With Obscurin- Like 1 Length = 100

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P I  +  D++ +E + +T++C  TG P P++ W    + I +   G       ++ I+ 
Sbjct: 6   PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQG-------RFHIEN 58
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
            + L+ L I+ V   D G+YT    N  G     +++++
Sbjct: 59  TDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97

>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From Myosin Light Chain Kinase, Smooth Muscle Length = 99

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 14/93 (15%)
Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
           +P+   +  D    E ++  L C   G+PVP+I W+   + I             QY   
Sbjct: 11  APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI-------------QYARS 57
Query: 205 TINS-LSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
           T  + ++ L I      D G YTC A+N  G+V
Sbjct: 58  TCEAGVAELHIQDALPEDHGTYTCLAENALGQV 90

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 78  LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
           L +  F KL +L EL L  NQ++ VP    D + EL+ LKL  N ++++   AF ++ KL
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207
Query: 138 NLEDFACSP 146
            +     +P
Sbjct: 208 KMLQLQENP 216

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 18/144 (12%)
Query: 119 SGNPIQKITHEAFINVPKLNLEDFACSP--NIRPITPDVTAEENENVTLSCRATGSPVPK 176
           + NP+   +  A     KL L +    P  +++P++ D+     E+ T  C  TG+   K
Sbjct: 176 ASNPLGTASSSA-----KLTLSEHEVPPFFDLKPVSVDLAL--GESGTFKCHVTGTAPIK 228
Query: 177 IKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
           I W    +    I  G        Y +  + + + LT++ VT  D+G YTC A N AG+ 
Sbjct: 229 ITWAKDNR---EIRPG------GNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD 279
Query: 237 FTNISLNVIKVETAVAQPDPVYLV 260
             +  L V +    + + +P  +V
Sbjct: 280 SCSAQLGVQEPPRFIKKLEPSRIV 303

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 36/156 (23%)
Query: 111 LELRELKLSGNPIQKITHEAFINVPKLNLED---FAC-------------------SPNI 148
           ++ R++  S +P Q  T E  + +P ++ ED   + C                    P  
Sbjct: 238 IKWRKVDGSLSP-QWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEW 296
Query: 149 RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS 208
             +  D  A+   N+   C A G P P ++W+            LA+ N+ + +      
Sbjct: 297 LKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRN-------GEPLASQNRVEVLA----- 344
Query: 209 LSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
             +L    +++ DSG+Y C A+N  G ++ +  L V
Sbjct: 345 -GDLRFSKLSLEDSGMYQCVAENKHGTIYASAELAV 379

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 156 TAEENENVTLSCRATGSPVPKIKWIFKEKIIA-NISSGLANMNKRQYIIKTINSLSNLTI 214
           T  EN  VTL C A G P+P+I W  K  +     + G  +++ R   +K  +  S+L I
Sbjct: 11  TTYENGQVTLVCDAEGEPIPEITW--KRAVDGFTFTEGDKSLDGR-IEVKGQHGSSSLHI 67
Query: 215 VAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
             V +SDSG Y C A +  G    ++ L++
Sbjct: 68  KDVKLSDSGRYDCEAASRIGGHQKSMYLDI 97

>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1 Length = 99

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P  +    D +  E ++V +S R  G P P + W+   + +          ++R++  + 
Sbjct: 6   PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPV--------RPDQRRFAEEA 57
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAG 234
              L  L I+A    D+G YTC+A N  G
Sbjct: 58  EGGLCRLRILAAERGDAGFYTCKAVNEYG 86

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 156 TAEENENVTLSCRATGSPVPKIKWIFKEKIIA-NISSGLANMNKRQYIIKTINSLSNLTI 214
           T  EN  VTL C A G P+P+I W  K  +     + G  +++ R   +K  +  S+L I
Sbjct: 11  TTYENGQVTLVCDAEGEPIPEITW--KRAVDGFTFTEGDKSLDGR-IEVKGQHGSSSLHI 67
Query: 215 VAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
             V +SDSG Y C A +  G    ++ L++
Sbjct: 68  KDVKLSDSGRYDCEAASRIGGHQKSMYLDI 97

>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In Complex With Nerve Growth Factor Length = 347

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 85/203 (41%), Gaps = 41/203 (20%)
Query: 77  FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI---------QKIT 127
           F+    F     L  L+LS+N ++ +    +   L L+EL LSGNP+         Q+  
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGNPLHCSCALRWLQRWE 128
Query: 128 HEAFINVPKLNLE-----------DFACS-PNIRPITPDVTAEENENVTLSCRATGSPVP 175
            E    VP+  L+           + +C  P ++   P+ + +  ++V L C+  G  + 
Sbjct: 129 EEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLE 188
Query: 176 KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS-NLTIVAVTMS-DSGIYTCRAKNGA 233
           +  WI  E            + +   ++K+    S  LT+  VT   +    TC A+N  
Sbjct: 189 QAGWILTE------------LEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDV 236
Query: 234 GEVFTNISLNV-----IKVETAV 251
           G    ++ +NV     +++ TAV
Sbjct: 237 GRAEVSVQVNVSFPASVQLHTAV 259

>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The Immunodominant Glycoprotein Of Bacillus Anthracis Spores Length = 179

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 31/117 (26%)
Query: 33  AECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRY----------- 81
           A CPS C C       TV C+ ++  ++P  +   TQVL L  N + +            
Sbjct: 11  AACPSQCSCS----GTTVNCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQL 66
Query: 82  ----------------TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
                            F KL  L  L L  NQ++ +P  + D++  L  + L  NP
Sbjct: 67  TYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNP 123

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 14/83 (16%)
Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTI 214
           +  ++ ++VT+ C+ TG P P + W    K    +S G A +             S L I
Sbjct: 319 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKP---LSGGRATVTD-----------SGLVI 364
Query: 215 VAVTMSDSGIYTCRAKNGAGEVF 237
             V   D G Y CRA N  G+ +
Sbjct: 365 KGVKNGDKGYYGCRATNEHGDKY 387

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P    +  +++ +E     +  + +G P P + W    + +   S  L  M      I +
Sbjct: 6   PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQ--SDDLHKM------IVS 57
Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE 248
              L +L    V  SD+G Y C AKN AGE    + L+V+  E
Sbjct: 58  EKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           ++ A E+ ++   C  +G PVP + W+    ++              Y    I   SNL 
Sbjct: 321 NLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVI----------PSDYF--QIVGGSNLR 368
Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
           I+ V  SD G Y C A+N AG   ++  L V K
Sbjct: 369 ILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 137 LNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANM 196
           L  EDF   P I     D+   + E  TL+C+A G P P I+W    K    + +   + 
Sbjct: 3   LRQEDFP--PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWY---KGGERVETDKDDP 57
Query: 197 NKRQYIIKTINSLSNLTIVAVTMS--DSGIYTCRAKNGAGEVFT-NISLNV 244
              + ++ +  SL  L IV    S  D G+Y C A+N  GE  + + SL V
Sbjct: 58  RSHRMLLPS-GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 78  LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
           L +  F KL NL  LDL  NQ+Q +P  + D + +L++L L+ N ++ +    F  +  L
Sbjct: 148 LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSL 207
Query: 138 -------NLEDFACS 145
                  N  D ACS
Sbjct: 208 THIWLLNNPWDCACS 222

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 144 CSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYII 203
             P+   +  D  A+   ++  SC A+G P P ++W+            LA+ N+ +   
Sbjct: 293 AQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWL-------RDGQPLASQNRIEV-- 343
Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
               S   L    + + DSG+Y C A+N  G V+ +  L V
Sbjct: 344 ----SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI 206
           +++P++ D+     E+ T  C  TG+   KI W    + I    +         Y +  +
Sbjct: 9   DLKPVSVDLAL--GESGTFKCHVTGTAPIKITWAKDNREIRPGGN---------YKMTLV 57
Query: 207 NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLV 260
            + + LT++ VT  D+G YTC A N AG+   +  L V +    + + +P  +V
Sbjct: 58  ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIV 111

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 136 KLNLEDFACSPNIRPITP------DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANI 189
           ++N +D     N+ P         + TA   ++VTL C A G P P + W    + I N 
Sbjct: 181 EINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN- 239
Query: 190 SSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
                  +  ++I    +  S LTI  V  +D   Y C A+N AGE   +I L V 
Sbjct: 240 ----EEEDDEKHIFS--DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	369
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-30
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-10
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-23
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	4e-23
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-13
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	6e-22
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	7e-22
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	9e-13
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	8e-22
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-21
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-15
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-15
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-14
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-14
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-14
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-11
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-21
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-18
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	4e-21
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-20
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	4e-21
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	5e-21
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	7e-19
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	7e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-09
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	8e-21
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	5e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-10
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	9e-21
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-17
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-20
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-18
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	1e-20
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	1e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	3e-20
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	4e-20
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	4e-17
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	4e-20
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	7e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	5e-20
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-16
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	5e-20
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-16
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	7e-20
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	8e-20
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	7e-18
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	8e-20
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	8e-20
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	8e-20
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-16
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	9e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-19
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-19
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-17
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-09
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-19
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-16
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-14
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-19
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	3e-19
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-19
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-19
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-18
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	4e-19
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	4e-19
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-17
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	5e-19
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	6e-19
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	7e-19
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-17
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-19
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-18
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-18
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-18
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-18
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-17
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-17
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-16
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-18
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	8e-17
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-18
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-13
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	4e-12
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-18
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	9e-09
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-18
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-16
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-16
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	3e-18
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	8e-13
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	3e-18
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	3e-18
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-18
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-13
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	8e-13
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-18
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-15
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-15
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-15
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-13
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-13
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	7e-12
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-18
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	8e-18
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-17
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-17
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	8e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-05
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-17
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-13
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-17
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	6e-15
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-17
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	6e-11
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-17
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-09
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-17
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	7e-15
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-11
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-09
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-17
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-05
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-17
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-16
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	6e-15
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-11
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	4e-17
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	4e-17
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	5e-17
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	4e-16
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	6e-17
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	8e-17
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-16
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-16
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	8e-15
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-10
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-08
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-16
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-16
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-16
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-13
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-13
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-09
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-16
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-10
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-13
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-16
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-16
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	3e-16
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-16
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	6e-14
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-16
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-15
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-10
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-07
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	4e-16
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	6e-16
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-15
1he7_A	126	High affinity nerve growth factor receptor; transf	6e-16
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	8e-16
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-15
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	9e-11
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-09
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	8e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-15
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-15
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-13
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-11
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-15
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-10
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-09
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	1e-15
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	4e-09
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-15
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-14
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	7e-13
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-12
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-15
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-15
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-15
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	7e-15
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-15
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-04
2ens_A	96	Advanced glycosylation END product-specific recept	3e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-15
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	4e-15
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-11
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-09
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	7e-15
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-10
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-14
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-14
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	9e-13
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-12
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-11
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-11
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-10
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-14
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-12
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-06
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	8e-06
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-14
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	3e-14
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	4e-13
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-12
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	3e-14
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	3e-14
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	5e-11
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	4e-14
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-13
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-14
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	9e-14
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	4e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	1e-13
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	2e-13
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-13
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-04
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	5e-04
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-13
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	3e-13
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	3e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-06
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	4e-13
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-13
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	7e-13
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-11
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	4e-13
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	5e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-12
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	5e-11
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-12
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-11
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	3e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-12
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-06
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-05
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-05
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	6e-05
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	3e-12
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	5e-11
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-12
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-11
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-09
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	3e-12
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	9e-08
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-12
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	3e-12
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	4e-12
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	4e-12
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-12
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-04
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	5e-12
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	6e-12
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	5e-10
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-09
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	4e-07
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-06
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	8e-12
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-11
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-11
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	6e-10
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-08
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-11
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-11
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-11
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-09
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-11
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-11
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-11
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-11
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	7e-10
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-09
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	3e-11
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	4e-11
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-09
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	4e-11
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	9e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-08
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-10
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-07
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	1e-10
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	5e-10
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-10
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-10
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	8e-06
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	2e-10
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	5e-04
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	3e-10
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	8e-09
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	3e-10
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	5e-10
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	3e-06
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	6e-10
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	3e-04
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	8e-10
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	9e-10
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	9e-10
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	4e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	5e-09
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	3e-05
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	5e-09
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	8e-07
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	8e-09
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	9e-09
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-08
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-04
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	4e-08
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	4e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	8e-08
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	5e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	1e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-04
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	1e-07
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	3e-07
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	6e-05
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	4e-07
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	6e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	8e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	4e-06
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	4e-06
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	9e-05
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	6e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-04
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	6e-06
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	7e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	9e-06
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	9e-06
1xed_A	117	Polymeric-immunoglobulin receptor; IG-like fold, i	1e-05
2ol3_A	142	BM3.3 T-cell receptor alpha-chain; T cell receptor	1e-05
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	2e-05
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	2e-05
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	2e-05
3c6l_A	185	TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus	3e-05
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	3e-05
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	5e-04
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	4e-05
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	4e-05
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	4e-05
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	5e-05
2pkd_A	111	SLAM family member 5; signaling lymphocyte activat	1e-04
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	1e-04
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	1e-04
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	1e-04
3tjh_C	226	42F3 alpha; IG MHC, antigen recognition, TCR-PMHC,	1e-04
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	2e-04
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	2e-04
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	2e-04
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	2e-04
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	2e-04
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	4e-04
3gsn_A	199	RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human	2e-04
1lp9_E	194	T-cell receptor alpha chain; immunoregulatory comp	2e-04
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	2e-04
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	2e-04
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	2e-04
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	3e-04
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	3e-04
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	3e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	3e-04
1qfo_A	119	Protein (sialoadhesin); immunoglobulin superfamily	4e-04
3rgv_A	200	YAE62 TCR A chain; TCR, MHC, MHC class I, immune s	5e-04
4ei6_A	208	Valpha1 XV19 type II natural killer T cell recept	5e-04
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	5e-04
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	5e-04
1smo_A	119	Triggering receptor expressed on myeloid cells 1;	5e-04
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	5e-04
1xt5_A	135	Variable region-containing chitin-binding protein	7e-04
2jtd_A	142	Myomesin-1, skelemin; immunoglobulin domain, muscl	7e-04
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	7e-04
2q86_A	229	Valpha14 TCR; INKT cells, TCR, glycolipid recognit	7e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-04

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  126 bits (316), Expect = 3e-33
 Identities = 42/285 (14%), Positives = 77/285 (27%), Gaps = 65/285 (22%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQV--LDLSDN----FLDRYTFRKLIN 88
           CP  C      G   + C           L     +  L + +      L+    R L  
Sbjct: 1   CPDACCPH---GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGE 57

Query: 89  LVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVP--KLNLED----- 141
           L  L +  + ++FV          L  L LS N ++ ++ +    +   +L L       
Sbjct: 58  LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

Query: 142 -------------------------------------FACSPNIRPITPDVTAEENENVT 164
                                                    P ++   P+ + +  ++V 
Sbjct: 118 SCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVL 177

Query: 165 LSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM-SDSG 223
           L C+  G  + +  WI  E   +                        LT+  VT   +  
Sbjct: 178 LRCQVEGRGLEQAGWILTELEQSATVMK-----------SGGLPSLGLTLANVTSDLNRK 226

Query: 224 IYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVT 268
             TC A+N  G    ++ +NV    +             +   V 
Sbjct: 227 NVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVD 271

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 75.9 bits (186), Expect = 1e-15
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 2/101 (1%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
            +        TA E  +  +     G P P ++W+F   ++    +        +     
Sbjct: 247 VSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNE--TSFIFTEFLEPAANE 304

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
                 L +   T  ++G YT  A N  G+   +I    + 
Sbjct: 305 TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD 345

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  118 bits (298), Expect = 1e-30
 Identities = 41/235 (17%), Positives = 71/235 (30%), Gaps = 71/235 (30%)

Query: 69  QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHI---LDSILELRELKLSGNP 122
           +VL L +N    +DR  F  +  L +L LS NQI   P  +    + + +L  L LS N 
Sbjct: 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174

Query: 123 IQKITHEAFINVPK---------------------------------------------- 136
           ++K+       +P                                               
Sbjct: 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHS 234

Query: 137 ------LNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANIS 190
                  +L+ F CS           A   + +T+ C      + K+      + + +  
Sbjct: 235 KKLHNIFSLDFFNCSE---YKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQG 291

Query: 191 SGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
           S           ++      +L    V + D G+YTC A         ++ L V 
Sbjct: 292 SN------GSVSVRN----GDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVY 336

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  107 bits (269), Expect = 2e-26
 Identities = 30/131 (22%), Positives = 45/131 (34%), Gaps = 32/131 (24%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---------------- 78
           CP+ C C        + C  +    +P+ L   T +LDLS N L                
Sbjct: 12  CPANCLC----ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLH 67

Query: 79  ------------DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI 126
                           F  + NL  LDLS N +  +   +   +  L  L L  N I  +
Sbjct: 68  SLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV 127

Query: 127 THEAFINVPKL 137
              AF ++ +L
Sbjct: 128 DRNAFEDMAQL 138

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  114 bits (286), Expect = 2e-28
 Identities = 45/207 (21%), Positives = 80/207 (38%), Gaps = 41/207 (19%)

Query: 69  QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ- 124
           + L + ++    ++R  F  L +LVEL+L++N +  +P  +   +  L EL L  NP   
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304

Query: 125 -------------KITHEAFIN-------------VPKLNLEDFAC-SPNIRPITPDVTA 157
                         I   +                + +++   F C +P I     D+  
Sbjct: 305 DCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDLNI 364

Query: 158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV 217
            E     L CR    P+  +KW+     + + +S    +        ++ +   L    V
Sbjct: 365 SEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRI--------SVLNDGTLNFSHV 414

Query: 218 TMSDSGIYTCRAKNGAGEVFTNISLNV 244
            +SD+G+YTC   N AG    +  LNV
Sbjct: 415 LLSDTGVYTCMVTNVAGNSNASAYLNV 441

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  104 bits (262), Expect = 4e-25
 Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 33/177 (18%)

Query: 10  VMMIYEWRVYIMVLVCTGCLQVFAE----CPSTCECKWKGGKETVLCKAKNFTTIPEQLD 65
           +++ + +    + ++C       +     CPS C C  +     V+C  +  + +P+ + 
Sbjct: 17  ILLPFVYLTAQVWILCAAIAAAASAGPQNCPSVCSCSNQF--SKVVCTRRGLSEVPQGIP 74

Query: 66  VGTQVLDLSDNF---------------------------LDRYTFRKLINLVELDLSYNQ 98
             T+ L+L +N                            ++   F  L +L  L+L  N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 99  IQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSPNIRPITPDV 155
           +  +PS   + + +LREL L  NPI+ I   AF  VP L   D      +  I+   
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.7 bits (176), Expect = 5e-14
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 69  QVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
           + L+L    +        L+ L EL++S N    +       +  L++L +  + +  I 
Sbjct: 199 KYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258

Query: 128 HEAFINVPKL 137
             AF  +  L
Sbjct: 259 RNAFDGLASL 268

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.3 bits (162), Expect = 4e-12
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 6/73 (8%)

Query: 69  QVLDLSDN----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
             LDL +     ++    F  L NL  L+L    I+ +P+  L  ++ L EL++SGN   
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFP 231

Query: 125 KITHEAFINVPKL 137
           +I   +F  +  L
Sbjct: 232 EIRPGSFHGLSSL 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  113 bits (284), Expect = 4e-28
 Identities = 44/208 (21%), Positives = 76/208 (36%), Gaps = 40/208 (19%)

Query: 69  QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP--- 122
           Q L +  +    ++R  F  L +LVE++L++N +  +P  +   +  L  + L  NP   
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293

Query: 123 ----------IQKITHEAFINVPK--------------LNLEDFAC-SPNIRPITPDVTA 157
                     I+ +         +              L+   F C +P I     D+  
Sbjct: 294 NCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNV 353

Query: 158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV 217
            E     L CRA+   +  + WI          +G    +    +   + S   L    V
Sbjct: 354 TEGMAAELKCRAST-SLTSVSWI--------TPNGTVMTHGAYKVRIAVLSDGTLNFTNV 404

Query: 218 TMSDSGIYTCRAKNGAGEVFTNISLNVI 245
           T+ D+G+YTC   N  G    + +LNV 
Sbjct: 405 TVQDTGMYTCMVSNSVGNTTASATLNVT 432

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  103 bits (259), Expect = 9e-25
 Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 18  VYIMVLVCTGCLQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF 77
           + ++++ C         CPS C C  +     V+C  KN   +P+ +   T++L+L +N 
Sbjct: 18  LSVLLMGCVAETGSAQTCPSVCSCSNQF--SKVICVRKNLREVPDGISTNTRLLNLHENQ 75

Query: 78  ---LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINV 134
              +   +F+ L +L  L LS N I+ +     + +  L  L+L  N +  I + AF+ +
Sbjct: 76  IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL 135

Query: 135 PKL 137
            KL
Sbjct: 136 SKL 138

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 69  QVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
           + L+L+   L        LI L ELDLS N +  +       ++ L++L +  + IQ I 
Sbjct: 188 RYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247

Query: 128 HEAFINVPKL 137
             AF N+  L
Sbjct: 248 RNAFDNLQSL 257

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.5 bits (160), Expect = 7e-12
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 69  QVLDLSDN----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
           + LDL +     ++    F  L NL  L+L+   ++ +P+  L  +++L EL LSGN + 
Sbjct: 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLS 220

Query: 125 KITHEAFINVPKL 137
            I   +F  +  L
Sbjct: 221 AIRPGSFQGLMHL 233

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 56  NFTTIPEQLDVGT---QVLDLSDN---FLDRYTFRKLINLVELDLS-YNQIQFVPSHILD 108
             TTIP    V     + L L +N    +  Y F ++ +L  LDL    ++ ++     +
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 109 SILELRELKLSGNPIQKITHEAFINVPKL 137
            +  LR L L+   +++I       + KL
Sbjct: 183 GLSNLRYLNLAMCNLREI--PNLTPLIKL 209

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  110 bits (278), Expect = 3e-27
 Identities = 48/211 (22%), Positives = 74/211 (35%), Gaps = 45/211 (21%)

Query: 69  QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ- 124
           Q + L       ++ Y FR L  L  L++S NQ+  +   +  S+  L  L L  NP+  
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334

Query: 125 ---------------------------KITHEAFINVP-KLNLEDFACS-PNIRPITP-D 154
                                       +  + F + P  L    F C    IR      
Sbjct: 335 DCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQ 394

Query: 155 VTAEENENVTLSCRATGSPVPKIKWIF-KEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           V  +E   V   CRA G P P I W+  ++ +++  S+G            T+     L 
Sbjct: 395 VFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRL----------TVFPDGTLE 444

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           +    + D+G Y C A N  G       L+V
Sbjct: 445 VRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.8 bits (249), Expect = 3e-23
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF---LDRYTFRKLINLVE 91
           CP  CEC  +     VLC  K F  +PE +   T++LDL  N    L++  F    +L E
Sbjct: 3   CPPRCECSAQDR--AVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEE 60

Query: 92  LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
           L+L+ N +  V     +++  LR L L  N ++ I    F  +  L
Sbjct: 61  LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.4 bits (183), Expect = 1e-14
 Identities = 20/105 (19%), Positives = 44/105 (41%), Gaps = 6/105 (5%)

Query: 56  NFTTIPEQLDVGT---QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
               + + +       + L++ DN   ++    F  L +L +L L    +  +P+  L  
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174

Query: 110 ILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSPNIRPITPD 154
           +  L  L+L    I  I   +F  + +L + + +  P +  +TP+
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 69  QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
             L ++      +     R L+ L  L+LSYN I  +   +L  +L L+E++L G  +  
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286

Query: 126 ITHEAFINVPKL 137
           +   AF  +  L
Sbjct: 287 VEPYAFRGLNYL 298

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.8 bits (153), Expect = 5e-11
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 69  QVLDLSDN----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
           +VL++S       +       L NL  L +++  +  VP   +  ++ LR L LS NPI 
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261

Query: 125 KITHEAFINVPKL 137
            I       + +L
Sbjct: 262 TIEGSMLHELLRL 274

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 56  NFTTIPEQLDVGT---QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
           N T+IP +         VL L       +  Y+F++L  L  L++S+       +     
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 110 ILELRELKLSGNPIQKITHEAFINVPKL 137
            L L  L ++   +  + + A  ++  L
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYL 250

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 91.7 bits (228), Expect = 4e-23
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 8/97 (8%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           D+T +E +   + C+ +G P P + W    K +          +    ++   N + +L 
Sbjct: 18  DLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRP--------DSAHKMLVRENGVHSLI 69

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
           I  VT  D+GIYTC A N AG+   ++ L V   E+ 
Sbjct: 70  IEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 89.7 bits (223), Expect = 2e-22
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 8/95 (8%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           +++ +E     +  + +G P P + W    + + +        +    +I +   L +L 
Sbjct: 14  NMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQS--------DDLHKMIVSEKGLHSLI 65

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE 248
              V  SD+G Y C AKN AGE    + L+V+  E
Sbjct: 66  FEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 94.7 bits (236), Expect = 2e-22
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVE 91
           CP  C C  +  K T  C  +    +P  +   +Q + L  N    +   +FR   NL  
Sbjct: 2   CPGACVCYNEP-KVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTI 60

Query: 92  LDLSYNQIQFVPSHILDSILELRELKLSGNP-IQKITHEAFINVPKL 137
           L L  N +  + +     +  L +L LS N  ++ +    F  + +L
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 8/107 (7%)

Query: 69  QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
             L L  N    +    FR L +L  L L  N++  V  H    +  L  L L  N +  
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215

Query: 126 ITHEAFINVPKL---NLED--FACSPNIRPITPDVTAEENENVTLSC 167
           +  EA   +  L    L D  + C    RP+   +      +  + C
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPC 262

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.4 bits (173), Expect = 6e-14
 Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 69  QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
           Q L L DN    L   TFR L NL  L L  N+I  VP      +  L  L L  N +  
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 126 ITHEAFINVPKL 137
           +   AF ++ +L
Sbjct: 192 VHPHAFRDLGRL 203

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 69  QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
             L L       L    FR L  L  L L  N +Q +P      +  L  L L GN I  
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167

Query: 126 ITHEAFINVPKL 137
           +   AF  +  L
Sbjct: 168 VPERAFRGLHSL 179

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 88.1 bits (219), Expect = 6e-22
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 8/91 (8%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           D +  E ++V +S R  G P P + W+   + +          ++R++  +    L  L 
Sbjct: 14  DQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPV--------RPDQRRFAEEAEGGLCRLR 65

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           I+A    D+G YTC+A N  G       L V
Sbjct: 66  ILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 91.5 bits (227), Expect = 7e-22
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 8/100 (8%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
             +  +   VT +E + + L+C   G P P++ W+  EK +A              +   
Sbjct: 118 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQ--------TDHCNLKFE 169

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
               +  TI  V+ +DSG Y    KN  G   ++ +++V 
Sbjct: 170 AGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 65.7 bits (160), Expect = 9e-13
 Identities = 17/107 (15%), Positives = 27/107 (25%), Gaps = 10/107 (9%)

Query: 152 TPDVTAEENENVTLSCR-ATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
           T        E + L           K+ W      I          + R           
Sbjct: 9   TDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY--------SDR-VKTGVTGEQI 59

Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPV 257
            L I   T +D G Y     +G       + L+    + A A+   +
Sbjct: 60  WLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRL 106

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 89.3 bits (221), Expect = 8e-22
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 4/102 (3%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIAN----ISSGLANMNKRQYIIKTINSL 209
                   +V L C A GSPVP+I+W F+ +   +    +  G        +     ++ 
Sbjct: 30  SQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAA 89

Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAV 251
           S ++I  +   D+G Y CRA N         +  V  V    
Sbjct: 90  STISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQA 131

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 87.4 bits (217), Expect = 1e-21
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
            +T  E E+   SC   G PVP + W+ K ++++         + R + + T    S   
Sbjct: 23  SMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLST--------SAR-HQVTTTKYKSTFE 73

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
           I +V  SD G Y+   +N  G+     +L + K
Sbjct: 74  ISSVQASDEGNYSVVVENSEGKQEAEFTLTIQK 106

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 93.3 bits (232), Expect = 2e-21
 Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 16  WRVYIMVLVCTGCLQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSD 75
           W V+++ ++ +   +  +   ++  C            + +  +IP  L    + LDLS+
Sbjct: 6   WMVWVLGVIISLSKEE-SSNQASLSC---DRNGICKGSSGSLNSIPSGLTEAVKSLDLSN 61

Query: 76  N---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFI 132
           N   ++     ++ +NL  L L+ N I  +      S+  L  L LS N +  ++   F 
Sbjct: 62  NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121

Query: 133 NVPKL 137
            +  L
Sbjct: 122 PLSSL 126

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 69  QVLDLSDNFL----DRYTFRKLINLVELDLSYN-QIQFVPSHILDSILELRELKLSGNPI 123
             L+L  N      +   F  L  L  L +        +       +  L EL++  + +
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186

Query: 124 QKITHEAFINVPKLN 138
           Q    ++  ++  ++
Sbjct: 187 QSYEPKSLKSIQNVS 201

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.1 bits (138), Expect = 3e-09
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 69  QVLDLSDNF----LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
           Q+L + +      + R  F  L  L EL++  + +Q      L SI  +  L L      
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211

Query: 125 KITHEAFINVPKL 137
            +          +
Sbjct: 212 LLLEIFVDVTSSV 224

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.9 bits (135), Expect = 7e-09
 Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 3/74 (4%)

Query: 69  QVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
           + L++  + L  Y   + + + N+  L L   Q   +    +D    +  L+L    +  
Sbjct: 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236

Query: 126 ITHEAFINVPKLNL 139
                       +L
Sbjct: 237 FHFSELSTGETNSL 250

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 69  QVLDLSDNFLDRY--TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
           + + ++D  L +      ++  L+EL+ S NQ++ VP  I D +  L+++ L  NP  
Sbjct: 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 19/124 (15%)

Query: 69  QVLDLSDNFLDR-----------YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELK 117
           + L+L D  LD             +  K      + ++   +  V   +L+ I  L EL+
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM-KLLNQISGLLELE 283

Query: 118 LSGNPIQKITHEAFINVPKL---NLED--FACSPNIRPITPD--VTAEENENVTLSCRAT 170
            S N ++ +    F  +  L    L    + CS               + E  +  C  +
Sbjct: 284 FSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 343

Query: 171 GSPV 174
           G PV
Sbjct: 344 GKPV 347

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 95.0 bits (236), Expect = 2e-21
 Identities = 42/148 (28%), Positives = 61/148 (41%), Gaps = 10/148 (6%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
           N  +     A + +           P IR    + T E   +V L C A G+P P+I W 
Sbjct: 410 NDRESAEASAELKL-----GGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWE 464

Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
              K IAN           QY+    + +S L I +V  +D G+Y C AK+  G    + 
Sbjct: 465 LDGKKIANNDR----YQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSA 520

Query: 241 SLNVIKVETAVAQPDPVYLVASLTTVVT 268
            LNV      + Q +   +VA  T +VT
Sbjct: 521 KLNV-YGLPYIRQMEKKAIVAGETLIVT 547

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 77.3 bits (190), Expect = 1e-15
 Identities = 23/121 (19%), Positives = 33/121 (27%), Gaps = 7/121 (5%)

Query: 124 QKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE 183
            +++      V    +                T   +  + L C A G PVP  +W +K 
Sbjct: 227 TRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRW-YKF 285

Query: 184 KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLN 243
                   G           +       L I    + DSG Y C   N  G       L 
Sbjct: 286 ------IEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT 339

Query: 244 V 244
           V
Sbjct: 340 V 340

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 77.3 bits (190), Expect = 1e-15
 Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 27/124 (21%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
           N +   + E  + V            + +   P  T +       +C+ TG+P+  + W+
Sbjct: 327 NSVGGESVETVLTVTA--------PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM 378

Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
              K I                    +S S L I +V   D G+Y C  +N       + 
Sbjct: 379 KDGKAI-------------------GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASA 419

Query: 241 SLNV 244
            L +
Sbjct: 420 ELKL 423

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 73.8 bits (181), Expect = 2e-14
 Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 146 PNIRPITP-DVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYII 203
           P I P    +  A+  + +TL C   G  +P  I W    + I+         +      
Sbjct: 619 PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISE--------DLGITTS 670

Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           +     S LTI AV  S +G +TC A+N AG       LNV
Sbjct: 671 RVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNV 711

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 72.7 bits (178), Expect = 5e-14
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 6/102 (5%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P       D    +  +  + C+A G P P++ W                    +     
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDT------PGEYKDLKKSDNI 768

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV 247
                 L +  +  ++ G Y C A NG G   + + +  ++ 
Sbjct: 769 RVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQA 810

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 71.9 bits (176), Expect = 8e-14
 Identities = 29/142 (20%), Positives = 49/142 (34%), Gaps = 23/142 (16%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
           + +    H A +NV  L        P IR +         E + ++C   G P+  I W 
Sbjct: 511 SKVGVAEHSAKLNVYGL--------PYIRQM-EKKAIVAGETLIVTCPVAGYPIDSIVWE 561

Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM-SDSGIYTCRAKNGAGEVFT- 238
              + +         +N++Q +         L I  V   SD   YTC AKN  G     
Sbjct: 562 RDNRAL--------PINRKQKVFPN----GTLIIENVERNSDQATYTCVAKNQEGYSARG 609

Query: 239 NISLNVIKVETAVAQPDPVYLV 260
           ++ + V+ +   +         
Sbjct: 610 SLEVQVMVLPRIIPFAFEEGPA 631

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 68.0 bits (166), Expect = 1e-12
 Identities = 19/113 (16%), Positives = 43/113 (38%), Gaps = 17/113 (15%)

Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
             +    +    + C+A+G+P+P+I WI  +        G          ++ I+S   L
Sbjct: 47  NRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPG----------LRQISSDGKL 96

Query: 213 TIVAVTMSD------SGIYTCRAKNGAGEVFT-NISLNVIKVETAVAQPDPVY 258
                   D      + +Y C A+N  G + + ++ +  +  +   A  +  +
Sbjct: 97  VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEH 149

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 63.4 bits (154), Expect = 5e-11
 Identities = 23/146 (15%), Positives = 37/146 (25%), Gaps = 19/146 (13%)

Query: 142 FACSPNIRPITPDVTAEENENVTLSCRA---TGSPVPKIKWIFKEKIIANISSGLANMNK 198
              +                +  + C         V  + W   E+         A  + 
Sbjct: 135 AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEE---ENYFPGAEYDG 191

Query: 199 RQYIIKTINSLSNLTIVAVTMSDS-GIYTCRAKN---GAGEVFTNISLNVIKVETAVAQP 254
           +  ++ +      L I  V   D    Y CR K+   G   +       VI    + A P
Sbjct: 192 KYLVLPS----GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVP 247

Query: 255 DPVYLVASLTTVV----TIILTACFV 276
             V L            T+ L  C  
Sbjct: 248 KVVSLAKFDMKTYSGSSTMALL-CPA 272

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 90.7 bits (225), Expect = 2e-21
 Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 7/137 (5%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITP-DVTAEENENVTLSCRATGSPVPKIKW 179
           N    I H   ++V    +E     P ++   P + +     +V   C+      P I+W
Sbjct: 97  NEYGSINHTYHLDV----VERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 152

Query: 180 IFKEKIIAN--ISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
           I   +   +     GL  +   ++     ++   L +  VT +D+G Y C+  N  G+  
Sbjct: 153 IKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQAN 212

Query: 238 TNISLNVIKVETAVAQP 254
            +  L V+  + A  + 
Sbjct: 213 QSAWLTVLPKQQAPGRE 229

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 81.9 bits (202), Expect = 3e-18
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 10/104 (9%)

Query: 142 FACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQY 201
           +  +  +              V   C A G+P+P ++W+   K              R  
Sbjct: 18  WTNTEKMEK--RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF--------KQEHRIG 67

Query: 202 IIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
             K  N   +L + +V  SD G YTC  +N  G +     L+V+
Sbjct: 68  GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 111

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 85.8 bits (213), Expect = 4e-21
 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
             T  +  +     R  G P P+ +W      I          + R Y     +++  L 
Sbjct: 14  SQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIER--------SDRIYWYWPEDNVCELV 65

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           I  VT  DS     +A N AGE  ++  L V
Sbjct: 66  IRDVTGEDSASIMVKAINIAGETSSHAFLLV 96

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 88.6 bits (220), Expect = 5e-21
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 11/112 (9%)

Query: 143 ACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFK--EKIIANISSGLANMNKRQ 200
           A +P+ +    ++      N TL C+ TG P P +KW ++  ++IIA+          + 
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKW-YRQGKEIIAD--------GLKY 52

Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVA 252
            I +       L I +VT  D+ +Y  RA N  G V    SL V        
Sbjct: 53  RIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHL 104

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 82.8 bits (205), Expect = 7e-19
 Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 17/128 (13%)

Query: 121 NPIQKITHEAFINV---PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKI 177
           N    ++  A + V    K++L               V A   E V++    +G P P I
Sbjct: 83  NQGGSVSGTASLEVEVPAKIHLPKTLEGM------GAVHALRGEVVSIKIPFSGKPDPVI 136

Query: 178 KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
            W   + +I N        N    +I T +  S +    V   D+G Y   AKN  G   
Sbjct: 137 TWQKGQDLIDN--------NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQ 188

Query: 238 TNISLNVI 245
             + L+V 
Sbjct: 189 KTVELDVA 196

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 85.4 bits (212), Expect = 7e-21
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 9/91 (9%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           D T   +     + +ATG P P   W  K+     I+ G       +Y +        L 
Sbjct: 15  DTTVSSDSVAKFAVKATGEPRPTAIW-TKDGKA--ITQG------GKYKLSEDKGGFFLE 65

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           I     SDSG+YTC  KN AG V ++  L +
Sbjct: 66  IHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.8 bits (226), Expect = 8e-21
 Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query: 29  LQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF---LDRYTFRK 85
               A CP  C C        V C       +P+++   T +LDL +N    L +  F+ 
Sbjct: 21  PTYSAMCPFGCHCH----LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKG 76

Query: 86  LINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLED 141
           L +L  L L  N+I  +       + +L++L +S N + +I      ++ +L + D
Sbjct: 77  LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHD 132

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 56  NFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILE 112
             T IP+ L      L L  N    ++     +   L  L L +NQI+ + +  L  +  
Sbjct: 183 KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242

Query: 113 LRELKLSGNPIQKITHEAFINVPKL 137
           LREL L  N + ++      ++  L
Sbjct: 243 LRELHLDNNKLSRVPA-GLPDLKLL 266

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 19/69 (27%), Positives = 29/69 (42%)

Query: 69  QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
             L +S+  L          L EL L +N+IQ +    L    +L  L L  N I+ I +
Sbjct: 175 NYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234

Query: 129 EAFINVPKL 137
            +   +P L
Sbjct: 235 GSLSFLPTL 243

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 69  QVLDLSDN-----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
             +++  N       +   F  L  L  L +S  ++  +P  + ++   L EL L  N I
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPET---LNELHLDHNKI 205

Query: 124 QKITHEAFINVPKL 137
           Q I  E  +   KL
Sbjct: 206 QAIELEDLLRYSKL 219

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 56  NFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQ--FVPSHILDSI 110
           +   IP  L      L + DN    + +  F  L N+  +++  N ++         D  
Sbjct: 113 HLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG- 171

Query: 111 LELRELKLSGNPIQKITHEAFINVPKLNLED 141
           L+L  L++S   +  I  +    + +L+L+ 
Sbjct: 172 LKLNYLRISEAKLTGIPKDLPETLNELHLDH 202

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 10/79 (12%)

Query: 69  QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQ------FVPSHILDSILELRELKLSG 120
           + L L +N L R       L  L  + L  N I       F P            + L  
Sbjct: 244 RELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

Query: 121 NPIQ--KITHEAFINVPKL 137
           NP+   ++    F  V   
Sbjct: 304 NPVPYWEVQPATFRCVTDR 322

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 88.5 bits (219), Expect = 8e-21
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 1/101 (0%)

Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
           S  +    P+V   EN  V LSC  +G   P+++W F +     +     N     Y  +
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCY-NNKITASYEDR 62

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
                + +T  +VT  D+G YTC      G  +  + + +I
Sbjct: 63  VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 80.8 bits (199), Expect = 5e-18
 Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 9/129 (6%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRAT-GSPVPKIKW 179
                   E  + +           P+   +    +A       L+C    GSP  +  W
Sbjct: 89  EEGGNSYGEVKVKL------IVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTW 142

Query: 180 IFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN 239
                ++          +   Y++        L    ++ SD+G Y+C A+NG G   T+
Sbjct: 143 FKDGIVMPTNPKSTRAFSNSSYVLNPTTG--ELVFDPLSASDTGEYSCEARNGYGTPMTS 200

Query: 240 ISLNVIKVE 248
            ++ +  VE
Sbjct: 201 NAVRMEAVE 209

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.8 bits (226), Expect = 9e-21
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 7/110 (6%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF---LDRYTFRKLINLVE 91
           CP  C+C        V C       +P+ L   T +LDL +N    +    F+ L NL  
Sbjct: 25  CPFRCQC----HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT 80

Query: 92  LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLED 141
           L L  N+I  +       +++L  L LS N ++++  +    + +L + +
Sbjct: 81  LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHE 130

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 68.1 bits (167), Expect = 5e-13
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 56  NFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILE 112
           N TTIP+ L      L L  N    +D  + + L NL +L LS+N I  V +  L +   
Sbjct: 182 NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241

Query: 113 LRELKLSGNPIQKITHEAFINVPKL 137
           LREL L+ N + K+      +   +
Sbjct: 242 LRELHLNNNKLVKVPG-GLADHKYI 265

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 69  QVLDLSDN-----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
            V++L  N      ++   F+ +  L  + ++   I  +P  +  S   L EL L GN I
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKI 204

Query: 124 QKITHEAFINVPKL 137
            K+   +   +  L
Sbjct: 205 TKVDAASLKGLNNL 218

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 18/69 (26%), Positives = 30/69 (43%)

Query: 69  QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
             + ++D  +         +L EL L  N+I  V +  L  +  L +L LS N I  + +
Sbjct: 174 SYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 233

Query: 129 EAFINVPKL 137
            +  N P L
Sbjct: 234 GSLANTPHL 242

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 14/91 (15%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 56  NFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQ--FVPSHILDSI 110
               +PE++    Q L + +N    + +  F  L  ++ ++L  N ++   + +     +
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 111 LELRELKLSGNPIQKITHEAFINVPKLNLED 141
            +L  ++++   I  I      ++ +L+L+ 
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPSLTELHLDG 201

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 10/79 (12%)

Query: 69  QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQ------FVPSHILDSILELRELKLSG 120
           + L L++N L +          +  + L  N I       F P            + L  
Sbjct: 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 121 NPIQ--KITHEAFINVPKL 137
           NP+Q  +I    F  V   
Sbjct: 303 NPVQYWEIQPSTFRCVYVR 321

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 87.8 bits (218), Expect = 9e-21
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           DVT +  E   LSC+  G P+P IKW    K +            R+Y + +      LT
Sbjct: 16  DVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQ---------SRKYKMSSDGRTHTLT 66

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
           ++     D G+YTC A N  GEV T+  L + 
Sbjct: 67  VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQ 98

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 79.7 bits (197), Expect = 1e-17
 Identities = 19/128 (14%), Positives = 45/128 (35%), Gaps = 21/128 (16%)

Query: 121 NPIQKITHEAFINV---PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKI 177
           N + ++   + + +   P+ +           P+           + L     G PVP +
Sbjct: 84  NEVGEVETSSKLLLQATPQFHPG--------YPLKEKYYGAVGSTLRLHVMYIGRPVPAM 135

Query: 178 KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM-SDSGIYTCRAKNGAGEV 236
            W   +K++ N        ++    I+     ++L +  V   + +G Y  +  N  G V
Sbjct: 136 TWFHGQKLLQN--------SEN-ITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV 186

Query: 237 FTNISLNV 244
              + + +
Sbjct: 187 DAILDVEI 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 87.9 bits (218), Expect = 1e-20
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
            V   E    T     +G PVP++ W    ++I+               I   +  + LT
Sbjct: 14  SVVVLEGSTATFEAHISGFPVPEVSWFRDGQVIST-------STLPGVQISFSDGRAKLT 66

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
           I AVT ++SG Y+ +A NG+G+  +   L V      
Sbjct: 67  IPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAP 103

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 82.1 bits (203), Expect = 1e-18
 Identities = 29/124 (23%), Positives = 42/124 (33%), Gaps = 14/124 (11%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
           N   + T  A + V     +     PN       +T  +   V L  R TG P P +K+ 
Sbjct: 84  NGSGQATSTAELLV-----KAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFY 138

Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
                I +        +   + I     L +L I      DSG Y+  A N  G   +  
Sbjct: 139 RDGAEIQS--------SLD-FQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTA 189

Query: 241 SLNV 244
            L V
Sbjct: 190 ELLV 193

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 84.7 bits (210), Expect = 1e-20
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
                E   VT +CR  G+P PKI W FK+         ++  +    I + ++   +L 
Sbjct: 17  HYKIFEGMPVTFTCRVAGNPKPKIYW-FKDGKQ------ISPKSDHYTIQRDLDGTCSLH 69

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
             A T+ D G YT  A N  G +     L V  V + 
Sbjct: 70  TTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 84.4 bits (209), Expect = 1e-20
 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P I     + T   +    L C+ATG P+P I W+ +                      T
Sbjct: 9   PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDP-----------RAT 57

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
           I     L I  + +SD+G YTC A + +GE   +  L+V 
Sbjct: 58  IQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 92.0 bits (229), Expect = 2e-20
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 34  ECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLV 90
              + C         T  C  +  + +P+ +   T+ +DLS N L     Y+F     L 
Sbjct: 2   GSLNPCIEVVPN--ITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQ 59

Query: 91  ELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
            LDLS  +I+ +       +  L  L L+GNPIQ  +  +F  +  L
Sbjct: 60  WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.8 bits (179), Expect = 4e-14
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 69  QVLDLSDN----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
             L ++ N          F    NL  LDLS  Q++ +   + D++  L+ L +S N + 
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510

Query: 125 KITHEAFINVPKL 137
            +    +  +  L
Sbjct: 511 FLDSSHYNQLYSL 523

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 69  QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
             LDLS   L       F  L  L  L++S+N + F+ S   + +  L  L  S N I+ 
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

Query: 126 ITHEAFINVPKL---NLED--FACSPNIRP 150
                      L   NL +   AC    + 
Sbjct: 536 SKGILQHFPKSLAFFNLTNNSVACICEHQK 565

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 69  QVLDLSDNFL----DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
           Q LD   + L    +   F  L  L+ LD+SY   +     I   +  L  LK++GN  +
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 125 K-ITHEAFINVPKL 137
                  F N   L
Sbjct: 462 DNTLSNVFANTTNL 475

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.7 bits (153), Expect = 7e-11
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 69  QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPS-HILDSILELRELKLSGNPIQK 125
           + LDLS N        F  L  L  LD  ++ ++ V       S+ +L  L +S    + 
Sbjct: 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 126 ITHEAFINVPKL 137
                F+ +  L
Sbjct: 439 DFDGIFLGLTSL 450

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.4 bits (152), Expect = 8e-11
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 69  QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
           Q L +    L ++    L  L  L L+ N+       +  ++  L  L LS N +     
Sbjct: 310 QSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV--ALPSLSYLDLSRNALSFSGC 367

Query: 129 EAFINVPKLNLEDFACSPN 147
            ++ ++   +L     S N
Sbjct: 368 CSYSDLGTNSLRHLDLSFN 386

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 10/94 (10%)

Query: 69  QVLDLSDNFLDR----YTFRKLINLVELDLSYNQIQFVPSHILDSILELR----ELKLSG 120
           + L+++ NF+        F  L NLV +DLSYN IQ +  + L  + E       L +S 
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 121 NPIQKITHEAFINVP--KLNLEDFACSPNIRPIT 152
           NPI  I  +AF  +   +L L     S NI    
Sbjct: 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 5/75 (6%)

Query: 68  TQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
                L+       D   F  L N+  + L+   I+++         + + L +    ++
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF--KWQSLSIIRCQLK 320

Query: 125 KITHEAFINVPKLNL 139
           +        +  L L
Sbjct: 321 QFPTLDLPFLKSLTL 335

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 69  QVLDLSDN---FLDRYTFR--KLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
             LDLS N   F    ++      +L  LDLS+N    + ++ +    EL+ L    + +
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLE-ELQHLDFQHSTL 411

Query: 124 QKIT-HEAFINVPKL 137
           +++T   AF+++ KL
Sbjct: 412 KRVTEFSAFLSLEKL 426

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 19/118 (16%)

Query: 56  NFTTIPE-------QLDVGTQVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQ-FVPS 104
              TI         +       LD+S N +       F + I L EL L  N     +  
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF-QGIKLHELTLRGNFNSSNIMK 222

Query: 105 HILDSILELRELKLSGN------PIQKITHEAFINVPKLNLEDFACSPN-IRPITPDV 155
             L ++  L   +L          ++         +  + +++F  +           
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 84.4 bits (209), Expect = 3e-20
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
                E ++V L C+ +  P PK+ W  +   +      +     R  + +       L 
Sbjct: 24  SKKVLEGDSVKLECQISAIPPPKLFW-KRNNEM------VQFNTDRISLYQDNTGRVTLL 76

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
           I  V   D+G YT  A N AG    N  L+V 
Sbjct: 77  IKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT 108

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 86.9 bits (215), Expect = 4e-20
 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 1/100 (1%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
            ++     DV   ENE++ L+C  +G   P+++W F +     +    + +        T
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
            +S S +T  +VT  D+G YTC      G+ +  +S+++ 
Sbjct: 62  FSS-SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 78.5 bits (193), Expect = 4e-17
 Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 2/108 (1%)

Query: 146 PNIRPITPDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
           P+   I+   +        L+C    GSP  +  W FK+ I    +              
Sbjct: 105 PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSW-FKDGISMLTADAKKTRAFMNSSFT 163

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVA 252
                 +L    VT  DSG Y C+A+NG G    + + ++  VE  V 
Sbjct: 164 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNVG 211

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 86.4 bits (214), Expect = 4e-20
 Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 9/110 (8%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P       D T       +  C+ATG P PKI W  K K ++N         + + I   
Sbjct: 7   PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN--------QRFEVIEFD 58

Query: 206 INSLSNLTIVAV-TMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQP 254
             S S L I  + T  D  IY C A N  GE+  +  L V++ +      
Sbjct: 59  DGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGF 108

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 80.2 bits (198), Expect = 7e-18
 Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 8/125 (6%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
           N + +I+    + V + + +     P I         E     T+ C A+G+P P+I W 
Sbjct: 85  NNVGEISVSTRLTVLRED-QIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWF 143

Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT-N 239
                +        + N  +       S+  L I     SD G Y C A N AG  ++  
Sbjct: 144 KDFLPV------DTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAP 197

Query: 240 ISLNV 244
            +L V
Sbjct: 198 ANLYV 202

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 87.7 bits (218), Expect = 5e-20
 Identities = 36/105 (34%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 36  PSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVEL 92
           P            T  C   NF  IP+ L   T+ LDLS N    L  Y+F     L  L
Sbjct: 2   PCVEVV----PNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVL 57

Query: 93  DLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
           DLS  +IQ +      S+  L  L L+GNPIQ +   AF  +  L
Sbjct: 58  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.8 bits (148), Expect = 9e-11
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 11/81 (13%)

Query: 68  TQVLDLSDNFLDRY----TFRKLINLVELDLSYNQIQFVPSHILDSILELR----ELKLS 119
            + L+++ N +  +     F  L NL  LDLS N+IQ +    L  + ++      L LS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 120 GNPIQKITHEAFINVPKLNLE 140
            NP+  I   AF    ++ L+
Sbjct: 186 LNPMNFIQPGAFK---EIRLK 203

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.1 bits (141), Expect = 9e-10
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 69  QVLDLSDN---FLDRYTFRKLINL----VELDLSYNQIQFVPSHILDSILELRELKLSGN 121
           + LDLS N    +     R L  +    + LDLS N + F+        + L+EL L  N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTN 210

Query: 122 PIQKITHEAFINVPKLN 138
            ++ +    F  +  L 
Sbjct: 211 QLKSVPDGIFDRLTSLQ 227

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 11/79 (13%)

Query: 56  NFTTIPE-------QLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSH 105
              +I         Q+ +    LDLS N   F+    F+++  L EL L  NQ++ VP  
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDG 218

Query: 106 ILDSILELRELKLSGNPIQ 124
           I D +  L+++ L  NP  
Sbjct: 219 IFDRLTSLQKIWLHTNPWD 237

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 89.5 bits (222), Expect = 5e-20
 Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 3/99 (3%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P+I     + T  EN  VTL C A G P+P+I W  +       + G  +++ R   +K 
Sbjct: 2   PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITW-KRAVDGFTFTEGDKSLDGR-IEVKG 58

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
            +  S+L I  V +SDSG Y C A +  G    ++ L++
Sbjct: 59  QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 97

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 79.1 bits (195), Expect = 2e-16
 Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 14/128 (10%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P          + E   + +SC    +P   I W   + ++   ++             +
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTT-------NLKTYS 153

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPD-PVYLVASLT 264
                 L I   + +D G Y C A N  G  F    L +  V      P  P  +     
Sbjct: 154 TGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADV------PSSPYGVKIIEL 207

Query: 265 TVVTIILT 272
           +  T  ++
Sbjct: 208 SQTTAKVS 215

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 85.6 bits (212), Expect = 5e-20
 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 10/108 (9%)

Query: 140 EDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKR 199
           E    +P I      V A   E  T  C     P P+I W   + +I         +   
Sbjct: 2   EKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILI--------KLFDT 53

Query: 200 QYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV 247
           +Y I+    L  LTI++V  SD GIY C A NG G    +     +K+
Sbjct: 54  RYSIRENGQL--LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM 99

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 75.9 bits (187), Expect = 2e-16
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 13/100 (13%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P I     +V   E     L C   G+P P + WI  +  +          N R  ++++
Sbjct: 101 PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRE--------NSRIAVLES 152

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNV 244
                +L I  V   D+G Y C AKN  G  ++  + L V
Sbjct: 153 ----GSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 86.5 bits (214), Expect = 8e-20
 Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 10/141 (7%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITP-DVTAEENENVTLSCRATGSPVPKIKW 179
           N    I     ++V    LE     P ++   P + TA    +V   C+      P I+W
Sbjct: 93  NKFGSIRQTYTLDV----LERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 148

Query: 180 IFKEKIIAN---ISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
           +   ++  +             + +I +++ +   L +  V+  D G Y CRA N  G  
Sbjct: 149 LKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVA 208

Query: 237 FTNISLNVIKVETAVAQPDPV 257
                L+V       A+ + V
Sbjct: 209 EKAFWLSVH--GPRAAEEELV 227

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 81.1 bits (200), Expect = 7e-18
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 10/104 (9%)

Query: 142 FACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQY 201
           +     +      +       V   C A G+P P I W+   +              R  
Sbjct: 14  WTRPERMDK--KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREF--------RGEHRIG 63

Query: 202 IIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
            IK  +   +L + +V  SD G YTC  +N  G +    +L+V+
Sbjct: 64  GIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL 107

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 82.9 bits (205), Expect = 8e-20
 Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 11/112 (9%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P IR    + T   +    LSC ATGSPVP I W     +++   S       R   ++ 
Sbjct: 9   PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDS-------RIKQLEN 61

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPV 257
                 L I    + D+G YTC A   +GE   +  + V +    V  P P 
Sbjct: 62  ----GVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPT 109

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 82.8 bits (205), Expect = 8e-20
 Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 9/100 (9%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P I     D      E+V L  + TG+      W+   K I                ++ 
Sbjct: 8   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQI---------QESEHMKVEN 58

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
             + S LTI+A      G YT   +N  G     ++L V+
Sbjct: 59  SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 88.0 bits (218), Expect = 8e-20
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 8/100 (8%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
             +  +   VT +E + + L+C   G P P++ W+  EK +A+        +    +   
Sbjct: 223 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAS--------DDHCNLKFE 274

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
               +  TI  V+ +DSG Y    KN  G   ++ +++V 
Sbjct: 275 AGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 77.3 bits (190), Expect = 3e-16
 Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 12/130 (9%)

Query: 153 PDVTAEENENVTLSCRATGS-PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN 211
                    NV L C+         I W   E+ I+            ++  K  + +  
Sbjct: 14  LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV---------DEKHDFK--DGICT 62

Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIIL 271
           L I   +  D+GIY    K+  G+  + + L     +  + +      +++    +    
Sbjct: 63  LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTA 122

Query: 272 TACFVVLCII 281
               +   + 
Sbjct: 123 EGIQLYSFVT 132

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 64.2 bits (156), Expect = 9e-12
 Identities = 19/137 (13%), Positives = 33/137 (24%), Gaps = 19/137 (13%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATG----------SPVPKIKWIFKEKIIANISSGLAN 195
             +        A    ++ +   A G              K+ W      I         
Sbjct: 99  KELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY------- 151

Query: 196 MNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPD 255
            + R            L I   T +D G Y     +G       + L+    + A A+  
Sbjct: 152 -SDR-VKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQ 209

Query: 256 PVYLVASLTTVVTIILT 272
            +   A        +L 
Sbjct: 210 RLKQAAIAEKNRARVLG 226

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 85.9 bits (213), Expect = 1e-19
 Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 32/133 (24%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRY------------- 81
           CP  C C+      TV C  +    IPE +   T  L L++N                  
Sbjct: 5   CPEKCRCEGT----TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLR 60

Query: 82  ---------------TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI 126
                           F     + E+ L+ N+++ V   +   +  L+ L L  N I  +
Sbjct: 61  KINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCV 120

Query: 127 THEAFINVPKLNL 139
            +++FI +  + L
Sbjct: 121 GNDSFIGLSSVRL 133

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 84.8 bits (210), Expect = 1e-19
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 11/101 (10%)

Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
           + ++   + + TAE  E +T SCRA+GSP P I W    K+I          N++  +  
Sbjct: 98  AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE--------NEKYILK- 148

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
              S + LT+  +  SD G Y CRA N AGE      L V 
Sbjct: 149 --GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 77.5 bits (191), Expect = 4e-17
 Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 14/123 (11%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
              R +      ++ E+  + CR + SP P + W++  + +  IS               
Sbjct: 3   LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN----------RFA 52

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTT 265
           + + +NL I+ +  SD GIY C  +  A      I    I V   V  P       S   
Sbjct: 53  MLANNNLQILNINKSDEGIYRCEGRVEARG---EIDFRDIIVIVNVP-PAISMPQKSFNA 108

Query: 266 VVT 268
              
Sbjct: 109 TAE 111

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 82.0 bits (203), Expect = 1e-19
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 9/99 (9%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P I   +  +  +      L     G+P P   W   +   A              ++  
Sbjct: 3   PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAAL--------APE-LLVDA 53

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
            +S +++   +   +DSG Y  + KN  GE      + V
Sbjct: 54  KSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 5/108 (4%)

Query: 33  AECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINL 89
                 C  K     +T  C+      IP  L   T+ L+ S N L      TF +LINL
Sbjct: 2   TSSDQKCIEKEVN--KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINL 59

Query: 90  VELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
             LDL+  QI ++      S   L  L L+ NP+  +   A      L
Sbjct: 60  TFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 4/91 (4%)

Query: 69  QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
           + L      +   D         L  L L  N I  +         +L+ L    N I  
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167

Query: 126 ITHEAFINVPKLNLEDFACSPN-IRPITPDV 155
           ++ E   ++ +        + N I  I P  
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 6/77 (7%)

Query: 69  QVLDLSDNFLDR------YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
           Q L+L  N   +       + + L  L  L LS+  +  +  H   S+  +  + LS N 
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511

Query: 123 IQKITHEAFINVPKLNL 139
           +   + EA  ++  + L
Sbjct: 512 LTSSSIEALSHLKGIYL 528

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 69  QVLDLSDN----FLDRYTFRKLINLVELDLSYNQIQFVPSHI--LDSILELRELKLSGNP 122
             L +  N     L       L NL ELDLS++ I+        L ++  L+ L LS N 
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 123 IQKITHEAFINVPKL 137
              +  EAF   P+L
Sbjct: 388 PLSLKTEAFKECPQL 402

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.4 bits (160), Expect = 9e-12
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 69  QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
           ++L LS      +D++ F  L  +  +DLS+N++       L   L+   L L+ N I  
Sbjct: 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH-LKGIYLNLASNHISI 537

Query: 126 ITHEAFINVPKL---NLED--FACSPNIRP 150
           I       + +    NL      C+ +   
Sbjct: 538 ILPSLLPILSQQRTINLRQNPLDCTCSNIY 567

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 69  QVLDLSDNFL-----DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
           + LDLS + +          R L +L  L+LSYN+   + +       +L  L L+   +
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

Query: 124 QKITHE-AFINVPKL 137
           +    +  F N+  L
Sbjct: 413 KVKDAQSPFQNLHLL 427

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 7/76 (9%)

Query: 69  QVLDLSDNFLDR----YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
           ++LDL+   L        F+ L  L  L+LS++ +      + D +  L+ L L GN   
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

Query: 125 KITHE---AFINVPKL 137
           K   +   +   + +L
Sbjct: 463 KGNIQKTNSLQTLGRL 478

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 69  QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ-K 125
           Q LDL+   L         L  L +L LS N+ + +      +   L  L + GN  + +
Sbjct: 281 QELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 126 ITHEAFINVPKL 137
           +      N+  L
Sbjct: 341 LGTGCLENLENL 352

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 10/74 (13%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 69  QVLDLSDN---FLDRYTFRKL--INLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
            +    D     +    F  L  +++  ++L  +    + S+       L+EL L+   +
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

Query: 124 QKITHEAFINVPKL 137
            ++     + +  L
Sbjct: 291 SEL-PSGLVGLSTL 303

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 86.9 bits (215), Expect = 1e-19
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
           +   R    + TA   ++VTL C A G P P + W    + I N                
Sbjct: 196 TVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEED-------DEKHI 248

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
             +  S LTI  V  +D   Y C A+N AGE   +I L V 
Sbjct: 249 FSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 77.2 bits (190), Expect = 3e-16
 Identities = 25/127 (19%), Positives = 40/127 (31%), Gaps = 14/127 (11%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
              +        +E E+  + C    S  P I W  K + +                   
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRF----------I 150

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA---VAQPDPVYLVAS 262
           + S + L I  +  +D G Y C  +  A        + VI V       A+   V   A+
Sbjct: 151 VLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI-VNVPPTVQARQSIVNATAN 209

Query: 263 LTTVVTI 269
           L   VT+
Sbjct: 210 LGQSVTL 216

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 72.2 bits (177), Expect = 2e-14
 Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 8/114 (7%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSP-VPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
             +  +         E+    C+  G      I W             L+   +R  ++ 
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEK------LSPNQQRISVVW 56

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNVIKVETAVAQPDPV 257
             +  S LTI    + D+GIY C      G      +++ + +       P P 
Sbjct: 57  NDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQ 110

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 81.6 bits (202), Expect = 2e-19
 Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 11/99 (11%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P I     + T    E++ +SC A+G+P P+I W FK+       SG          I  
Sbjct: 11  PTITGNLENQTTSIGESIEVSCTASGNPPPQIMW-FKDNETLVEDSG----------IVL 59

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
            +   NLTI  V   D G+YTC+A +  G         +
Sbjct: 60  KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 81.2 bits (201), Expect = 2e-19
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           D    E ++  L C   G+PVP+I W+   + I            +         ++ L 
Sbjct: 20  DCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI------------QYARSTCEAGVAELH 67

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           I      D G YTC A+N  G+V  +  + V
Sbjct: 68  IQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 88.2 bits (219), Expect = 3e-19
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 12/106 (11%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDR---YTFRKLINLVE 91
           C ++              ++++FT+IP  L    + LDLS N +        R   NL  
Sbjct: 4   CDASG---------VCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQV 54

Query: 92  LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
           L L  ++I  +      S+  L  L LS N +  ++   F  +  L
Sbjct: 55  LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.5 bits (160), Expect = 7e-12
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 14/128 (10%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRE 115
               +   +    +VLD+S+N L       L  L EL +S N+++ +P   L     L  
Sbjct: 421 GIRVVKTCIPQTLEVLDVSNNNL-DSFSLFLPRLQELYISRNKLKTLPDASLFP--VLLV 477

Query: 116 LKLSGNPIQKITHEAFINVPKL---NLED--FACSPN----IRPITPDVTAEENENVTLS 166
           +K+S N ++ +    F  +  L    L    + CS      +       + +E  +    
Sbjct: 478 MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAK-- 535

Query: 167 CRATGSPV 174
           C  +G PV
Sbjct: 536 CSGSGKPV 543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 69  QVLDLSDN----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
           Q L + +      + R  F  L +L EL++    ++   S  L SI ++  L L  +   
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

Query: 125 KITHEAFINVPKLN 138
            +       +  + 
Sbjct: 186 FLLEIFADILSSVR 199

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 69  QVLDLSDNFLD----RYTFRKLINLVELDLS-YNQIQFVPSHILDSILELRELKLSGNPI 123
           + L+L  N          F  L NL  L +        +       +  L EL++    +
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160

Query: 124 QKITHEAFINVPKLNLEDFA 143
           +    ++  ++  ++     
Sbjct: 161 RNYQSQSLKSIRDIHHLTLH 180

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 69  QVLDLSDNFL-----DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
           Q L LS N L            L NL  LD+S N    +P        ++R L LS   I
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC-QWPEKMRFLNLSSTGI 422

Query: 124 QKITHEAFINVPKLNLED 141
           + +       +  L++ +
Sbjct: 423 RVVKTCIPQTLEVLDVSN 440

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 69  QVLDLSDNFLDR---YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
           + L +   +L       +  L  +  + +  +++  VP      +  L  L LS N + +
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 126 I---THEAFINVPKL 137
                       P L
Sbjct: 349 EYLKNSACKGAWPSL 363

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 69  QVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
             L++    L  Y   + + + ++  L L  ++  F+     D +  +R L+L    + +
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210

Query: 126 ITHEAFINVPKLN 138
                       +
Sbjct: 211 FQFSPLPVDEVSS 223

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 69  QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVP-SHILDSILELRELKLSG-NPI 123
           + LDLSDN    L    F  L +L  L+L  N  Q +  + +  ++  L+ L++      
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 124 QKITHEAFINVPKLN 138
            +I    F  +  LN
Sbjct: 137 SEIRRIDFAGLTSLN 151

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 56  NFTTIPEQLDVGT--QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILEL 113
            F  +P+        + L+LS   +          L  LD+S N +          +  L
Sbjct: 398 TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLF----LPRL 453

Query: 114 RELKLSGNPIQKITHEAFIN 133
           +EL +S N ++ +   +   
Sbjct: 454 QELYISRNKLKTLPDASLFP 473

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.9 bits (135), Expect = 9e-09
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 69  QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQ---FVPSHILDSILELRELKLSGNP 122
           + + + ++    +     + L +L  LDLS N +       S    +   L+ L LS N 
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372

Query: 123 IQKITHEA--FINVPKL 137
           ++ +       + +  L
Sbjct: 373 LRSMQKTGEILLTLKNL 389

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 3/64 (4%), Positives = 23/64 (35%)

Query: 74  SDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFIN 133
             + +      + + +  L +    + +  S +   + +++ + +  + +  +      +
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQH 332

Query: 134 VPKL 137
           +  L
Sbjct: 333 LKSL 336

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 82.6 bits (204), Expect = 3e-19
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 8/97 (8%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           D+   E       C+  G P P++ W   +  +          ++   I        +LT
Sbjct: 50  DMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKE--------SRHFQIDYDEEGNCSLT 101

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
           I  V   D   YTC+A N  GE      L V  +   
Sbjct: 102 ISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKE 138

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 85.6 bits (212), Expect = 3e-19
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P        V     E+ T  C  TG+   KI W    + I    +         Y +  
Sbjct: 6   PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGN---------YKMTL 56

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTT 265
           + + + LT++ VT  D+G YTC A N AG+   +  L V +    + + +P  +V     
Sbjct: 57  VENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEH 116

Query: 266 VV 267
             
Sbjct: 117 TR 118

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 85.6 bits (212), Expect = 3e-19
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 22/127 (17%)

Query: 121 NPIQKITHEAFINV---PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKI 177
           N   K +  A + V   P+           I+ + P    +++E+    C+  GSP  K+
Sbjct: 82  NVAGKDSCSAQLGVQEPPRF----------IKKLEPSRIVKQDEHTRYECKIGGSPEIKV 131

Query: 178 KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
            W   E  I             ++ +  + S++ L +  +++ DSG YTC A N AG   
Sbjct: 132 LWYKDETEIQE---------SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS 182

Query: 238 TNISLNV 244
           ++ SL V
Sbjct: 183 SSTSLKV 189

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 83.3 bits (206), Expect = 2e-18
 Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 17/124 (13%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
           N     +    + V +         P  R     V   +  +V L C   G+P  ++ W 
Sbjct: 176 NAAGSASSSTSLKVKE--------PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH 227

Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
             ++ + +         K+ Y I + N L+++ I+ V  +D G Y C+A N  G      
Sbjct: 228 KDKRELRS--------GKK-YKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVG 278

Query: 241 SLNV 244
           S+ +
Sbjct: 279 SITL 282

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 80.8 bits (200), Expect = 4e-19
 Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 9/104 (8%)

Query: 141 DFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQ 200
               +P I            +N          P  ++KW      +          + + 
Sbjct: 4   TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQE--------SSK- 54

Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
                 + +  L I+     DSG Y     N  GE     +L+V
Sbjct: 55  IHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDV 98

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 83.7 bits (207), Expect = 4e-19
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 13/131 (9%)

Query: 124 QKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE 183
             ++ +A + +     +  A  P I         E    V ++C+A G+P P I WI  +
Sbjct: 90  DAVSADATLTI-YEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQ 148

Query: 184 KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLN 243
             +        +M+  +Y +K       L I      D G Y C A+N  G   +  +  
Sbjct: 149 TKV--------DMSNPRYSLKD----GFLQIENSREEDQGKYECVAENSMGTEHSKATNL 196

Query: 244 VIKVETAVAQP 254
            +KV     + 
Sbjct: 197 YVKVRRVGTKH 207

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 79.1 bits (195), Expect = 2e-17
 Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 10/126 (7%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P I     +         +  C A G P P I W    K +       +    R  +++ 
Sbjct: 7   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKV-------SGTQSRYTVLEQ 59

Query: 206 INSLSNLTIVAVT-MSDSGIYTCRAKNGAGEVFT-NISLNVIKVETAVAQPDPVYLVASL 263
              +S L I  V    D   Y C A+NG G+  + + +L + + +   A   PV      
Sbjct: 60  PGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGF-PVITQGPG 118

Query: 264 TTVVTI 269
           T V+ +
Sbjct: 119 TRVIEV 124

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 80.2 bits (198), Expect = 5e-19
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
                    V   C A G+P+P ++W+   K              R    K  N   +L 
Sbjct: 17  LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF--------KQEHRIGGYKVRNQHWSLI 68

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
           + +V  SD G YTC  +N  G +     L+V+
Sbjct: 69  MESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 80.8 bits (199), Expect = 6e-19
 Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 3/95 (3%)

Query: 154 DVTAEENENVTLSCRATGSPV---PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
             T +  E++T   +     +   P IKW   + +     +G     K  +   +     
Sbjct: 16  GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTF 75

Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
            + I+    + +G Y C           +  L V 
Sbjct: 76  EMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH 110

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 85.4 bits (211), Expect = 7e-19
 Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 9/133 (6%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITP-DVTAEENENVTLSCRATGSPVPKIKW 179
           N    I     ++V    LE     P ++   P + TA    +V   C+      P I+W
Sbjct: 201 NKFGSIRQTYTLDV----LERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 256

Query: 180 I----FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE 235
           +         +    +    + K      T   L  L++  VT  D+G YTC A N  G 
Sbjct: 257 LKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGF 316

Query: 236 VFTNISLNVIKVE 248
              +  L V+  E
Sbjct: 317 SHHSAWLVVLPAE 329

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 81.2 bits (200), Expect = 2e-17
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 8/93 (8%)

Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
             +       V   C A G+P P I W+   +              R   IK  +   +L
Sbjct: 131 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRG--------EHRIGGIKLRHQQWSL 182

Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
            + +V  SD G YTC  +N  G +    +L+V+
Sbjct: 183 VMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL 215

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 61.2 bits (148), Expect = 1e-10
 Identities = 19/126 (15%), Positives = 36/126 (28%), Gaps = 15/126 (11%)

Query: 143 ACSPNIRPITP-DVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQ 200
           A  P   P     +     + V LSC    G P+    W  K+        G   +   +
Sbjct: 5   AEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVW-VKD--------GTGLVPSER 55

Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLV 260
            ++        L ++  +  DSG Y+CR +     +            +   +       
Sbjct: 56  VLVGP----QRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAE 111

Query: 261 ASLTTV 266
            +    
Sbjct: 112 DTGVDT 117

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 83.2 bits (206), Expect = 9e-19
 Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 31/132 (23%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL--------DRYT---- 82
           CP+ C C        V C+ K  T IP  L      + L  N +          Y     
Sbjct: 5   CPAACTCS----NNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRR 60

Query: 83  ---------------FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
                          F+ L +L  L L  N+I  +P  + + +  L+ L L+ N I  + 
Sbjct: 61  IDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120

Query: 128 HEAFINVPKLNL 139
            +AF ++  LNL
Sbjct: 121 VDAFQDLHNLNL 132

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 79.3 bits (196), Expect = 1e-18
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 10/92 (10%)

Query: 154 DVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
               EE  +V   C+        ++ W F  + + N           +Y I   + ++ L
Sbjct: 10  HAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLEN---------SEKYEITYEDGVAIL 60

Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
            +  +T  D G Y C+  N  GE  +   L V
Sbjct: 61  YVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 86.4 bits (214), Expect = 1e-18
 Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 17/124 (13%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
           N     +    + V           P  R     V   +  +V L C   G+P  ++ W 
Sbjct: 368 NAAGSASSSTSLKV--------KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH 419

Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
             ++ + +         K+ Y I + N L+++ I+ V  +D G Y C+A N  G      
Sbjct: 420 KDKRELRS--------GKK-YKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVG 470

Query: 241 SLNV 244
           S+ +
Sbjct: 471 SITL 474

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 84.9 bits (210), Expect = 4e-18
 Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 14/141 (9%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
           NP+   +  A     KL L +    P        V     E+ T  C  TG+   KI W 
Sbjct: 178 NPLGTASSSA-----KLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWA 232

Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
              + I              Y +  + + + LT++ VT  D+G YTC A N AG+   + 
Sbjct: 233 KDNREIRP---------GGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSA 283

Query: 241 SLNVIKVETAVAQPDPVYLVA 261
            L V +    + + +P  +V 
Sbjct: 284 QLGVQEPPRFIKKLEPSRIVK 304

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 84.5 bits (209), Expect = 5e-18
 Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 9/114 (7%)

Query: 137 LNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANM 196
           L +++    P+      DV       V   CR  GS   ++ W    +++ + ++     
Sbjct: 93  LVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDAN----- 147

Query: 197 NKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
                    I++++ L I+    S  G Y C A N  G   ++  L + + E  
Sbjct: 148 ----LQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVP 197

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 81.8 bits (202), Expect = 4e-17
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 22/127 (17%)

Query: 121 NPIQKITHEAFINV---PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKI 177
           N   K +  A + V   P+           I+ + P    +++E+    C+  GSP  K+
Sbjct: 274 NVAGKDSCSAQLGVQEPPRF----------IKKLEPSRIVKQDEHTRYECKIGGSPEIKV 323

Query: 178 KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
            W   E  I   S         ++ +  + S++ L +  +++ DSG YTC A N AG   
Sbjct: 324 LWYKDETEIQESS---------KFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS 374

Query: 238 TNISLNV 244
           ++ SL V
Sbjct: 375 SSTSLKV 381

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 81.0 bits (200), Expect = 6e-17
 Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 16/125 (12%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
           N +   T    I +           P       D++    E V L     G+    + W 
Sbjct: 461 NDVGSDTCVGSITL--------KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWF 512

Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
             +  I   S            I    +++ L       +++G YTC+ KN AG      
Sbjct: 513 KDKGEIVRESDN--------IWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFA 564

Query: 241 SLNVI 245
           +L+V+
Sbjct: 565 TLSVL 569

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 79.8 bits (197), Expect = 2e-16
 Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 9/105 (8%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P        V A   E +TL C+  G+P  +I W  +   + +  +         Y ++ 
Sbjct: 6   PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPA---------YKMQF 56

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
            N++++L I  V  SD G YTC+A+N  G V ++  L + + +  
Sbjct: 57  KNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLP 101

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 83.5 bits (206), Expect = 2e-18
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 10/125 (8%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
           N  +  +   ++ V +++ E     P I+     +     E   + C AT + V     +
Sbjct: 166 NGRESTSTGIWLKVNRVHPE----PPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVIL 221

Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
            +      I           +       +  L++ AV   D+GIY+C A N  G     +
Sbjct: 222 KRGDTKLEIP------LNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATM 275

Query: 241 SLNVI 245
           +  V+
Sbjct: 276 NFQVV 280

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 68.1 bits (166), Expect = 5e-13
 Identities = 24/100 (24%), Positives = 33/100 (33%), Gaps = 18/100 (18%)

Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
           +P I P  P++  E  E VTL C + GS    ++W         +               
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDPESPG--------- 50

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
                S LT    T  ++G Y C          T I L V
Sbjct: 51  -----STLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYV 85

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 65.4 bits (159), Expect = 4e-12
 Identities = 20/133 (15%), Positives = 36/133 (27%), Gaps = 22/133 (16%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITP-DVTAEENENVTLSCRATGSPV-PKIK 178
                 +    + V            +   +   +VT  E +   L C  T   +   + 
Sbjct: 72  EDPMAGSTTIHLYVKDP--------AHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVS 123

Query: 179 WIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT 238
            + +         G   + K  Y     +      I    + DS  Y C+      E  +
Sbjct: 124 LMRE--------GGRQVLRKTVYFF---SPWRGFIIRKAKVLDSNTYVCKTMVNGRESTS 172

Query: 239 -NISLNVIKVETA 250
             I L V +V   
Sbjct: 173 TGIWLKVNRVHPE 185

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 82.7 bits (203), Expect = 2e-18
 Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 13/116 (11%)

Query: 145 SPNIRPITP-DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYII 203
           S N+   T   V  +E  ++T++C  T      + W        N  +G       +   
Sbjct: 135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQF 194

Query: 204 KTINSLS------------NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV 247
                 S            NL I A  ++D+G   C    G GE+  + S  ++KV
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 54.5 bits (130), Expect = 9e-09
 Identities = 22/144 (15%), Positives = 39/144 (27%), Gaps = 23/144 (15%)

Query: 146 PNIRPITPDVTAEENENVTLSCR---ATGSPVPKIKWIFKEKIIANISSGLANMNKRQYI 202
             +R    +V       V L C    A  +  P I W+       +      N N +   
Sbjct: 3   MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62

Query: 203 IKTINSLS--------------------NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL 242
           +  + S S                     L +  V   D G Y C+    +      +  
Sbjct: 63  LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDA 122

Query: 243 NVIKVETAVAQPDPVYLVASLTTV 266
             + ++     P     V++   V
Sbjct: 123 KSVVLKVTGHTPSNNVHVSTAEVV 146

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 83.3 bits (206), Expect = 2e-18
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 11/101 (10%)

Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
           + ++   + + TAE  E +T SCRA+GSP P I W    K+I          N++  +  
Sbjct: 194 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE--------NEKYILK- 244

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
              S + LT+  +  SD G Y CRA N AGE      L V 
Sbjct: 245 --GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 283

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 78.3 bits (193), Expect = 1e-16
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 10/117 (8%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
             +      V     E+   +C A G P   I W            G   ++ ++ +++ 
Sbjct: 5   LQVTISLSKVELSVGESKFFTCTAIGEPES-IDWYNP--------QGEKIISTQRVVVQK 55

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNVIKVETAVAQPDPVYLVA 261
               S LTI    + D+GIY C+A +  G+     + L + +  T      P     
Sbjct: 56  EGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQ 112

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 76.4 bits (188), Expect = 6e-16
 Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 11/112 (9%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
              R +      ++ E+  + CR + SP P + W++  + +  IS        R  ++  
Sbjct: 99  LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN------RFAMLAN 152

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGA-GEVFTNISLNVIKVETAVAQPDP 256
               +NL I+ +  SD GIY C  +  A GE+     + ++ V  A++ P  
Sbjct: 153 ----NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQK 200

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 81.0 bits (200), Expect = 3e-18
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P+I          E ++  + C++ G P P+  W  KE     +   ++N + R + I  
Sbjct: 93  PDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKEN---GVFEEISNSSGR-FFIIN 148

Query: 206 INSLSNLTIVAVTM-SDSGIYTCRAKNGAGEVFTNISLNV 244
             + + L IV + +  D G Y C A N  G    +  L V
Sbjct: 149 KENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 65.3 bits (159), Expect = 8e-13
 Identities = 18/101 (17%), Positives = 26/101 (25%), Gaps = 17/101 (16%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKI--KWIFKEKIIANISSGLANMNKRQYII 203
           P I      +  +    VTL C  T S    +   W      +       +N        
Sbjct: 4   PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASN-------- 55

Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
                     I      DSG Y C   +       N ++ V
Sbjct: 56  ------MEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEV 89

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 78.6 bits (194), Expect = 3e-18
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 10/97 (10%)

Query: 149 RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS 208
           R +      +  E + L     G P P++ W      +          +  +  ++T + 
Sbjct: 28  RHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPL----------DTSRVHVRTSDF 77

Query: 209 LSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
            +   +     SDSG Y    +    +    I + V+
Sbjct: 78  DTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 78.5 bits (193), Expect = 3e-18
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 3/96 (3%)

Query: 154 DVTAEENENVTLSCRATGSPV---PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
           D       ++T S R  G+ +   P +KW   + +  +   G        Y   +   L 
Sbjct: 13  DGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLF 72

Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
            L I     + +G Y C          +N +L V +
Sbjct: 73  ELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 82.7 bits (204), Expect = 4e-18
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 6/100 (6%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P +  +  ++     E   + C A+   V    ++          + LA   +  +    
Sbjct: 187 PALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNN------TKLAIPQQSDFHNNR 240

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
              +  L +  V    +G Y+C A N  G+  T++   V+
Sbjct: 241 YQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 69.6 bits (170), Expect = 1e-13
 Identities = 21/100 (21%), Positives = 32/100 (32%), Gaps = 18/100 (18%)

Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
            P I P  P++  +    VTL C   GS    ++W                     + + 
Sbjct: 4   IPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGP--------------PSPHWTLY 45

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           +  S S L+    T  ++G Y C            I L V
Sbjct: 46  SDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYV 85

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 67.3 bits (164), Expect = 8e-13
 Identities = 19/148 (12%), Positives = 40/148 (27%), Gaps = 21/148 (14%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATG-SPVPKIKW 179
                 +    + V          +     +  +V   E+++  L C  T       +  
Sbjct: 72  GDPLGGSAAIHLYVKDP-------ARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSL 124

Query: 180 IFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN 239
           +          +             + +     TI       S  Y C A  G  +V + 
Sbjct: 125 VRVRGRPLMRHTNY-----------SFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSI 173

Query: 240 ISLNVIKVETAVAQPDPVYLVASLTTVV 267
                +KV+  +  P  + LV +    +
Sbjct: 174 SI--RLKVQKVIPGPPALTLVPAELVRI 199

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 84.4 bits (208), Expect = 6e-18
 Identities = 37/170 (21%), Positives = 59/170 (34%), Gaps = 24/170 (14%)

Query: 90  VELDLSYNQIQFVPSHILDSILELRELKL--SG-------NPIQKITHEAFINVPKLNLE 140
           ++     N   F  S     I+EL+   L   G       +   K  H     +  L   
Sbjct: 606 LDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERV 665

Query: 141 DFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQ 200
               +P I     + T    E++ +SC A+G+P P+I W    + +   S          
Sbjct: 666 ----APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG--------- 712

Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
             I   +   NLTI  V   D G+YTC+A +  G         +   +  
Sbjct: 713 --IVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 760

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 75.9 bits (186), Expect = 4e-15
 Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 25/128 (19%)

Query: 121 NPIQKITHEAFINV---PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKI 177
           + +    +  F+ V   P +             +   V A   E V +  +  G P P+I
Sbjct: 311 SGLMTKKNSTFVRVHEKPFVAFG--------SGMESLVEATVGERVRIPAKYLGYPPPEI 362

Query: 178 KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
           KW      +               I         LTI+ V+  D+G YT    N   +  
Sbjct: 363 KWYKNGIPL----------ESNHTIKAG----HVLTIMEVSERDTGNYTVILTNPISKEK 408

Query: 238 TNISLNVI 245
            +  ++++
Sbjct: 409 QSHVVSLV 416

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 75.9 bits (186), Expect = 4e-15
 Identities = 23/139 (16%), Positives = 44/139 (31%), Gaps = 20/139 (14%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
           N + +       +V +         P I  + PD+   E E+V+L C A  S    + W 
Sbjct: 534 NKVGRGERVISFHVTR--------GPEIT-LQPDMQPTEQESVSLWCTADRSTFENLTWY 584

Query: 181 FKEKIIANISSG-----------LANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA 229
                   I  G                       + N +  + +   ++ D G Y C A
Sbjct: 585 KLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLA 644

Query: 230 KNGAGEVFTNISLNVIKVE 248
           ++   +    +   +  +E
Sbjct: 645 QDRKTKKRHCVVRQLTVLE 663

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 75.2 bits (184), Expect = 6e-15
 Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWI-FKEKIIANISSGLANMNKRQYIIKTINSLSN 211
             +     E + L+C A       I +              +    K Q   +    LS 
Sbjct: 232 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 291

Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           LTI  VT SD G+YTC A +G      +  + V
Sbjct: 292 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 324

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 71.3 bits (174), Expect = 1e-13
 Identities = 29/138 (21%), Positives = 46/138 (33%), Gaps = 28/138 (20%)

Query: 146 PNIRP---ITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLAN------ 195
           P I     I+P  + +     TL+C     P P  I W ++ +         A       
Sbjct: 421 PQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPY 480

Query: 196 ------------------MNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
                             +NK Q+ +    + +  T+V    + S +Y C A N  G   
Sbjct: 481 PCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGE 540

Query: 238 TNISLNVIKVETAVAQPD 255
             IS +V +      QPD
Sbjct: 541 RVISFHVTRGPEITLQPD 558

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 70.2 bits (171), Expect = 3e-13
 Identities = 20/127 (15%), Positives = 36/127 (28%), Gaps = 13/127 (10%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P +      +T + N  + ++CR  G       W   +                      
Sbjct: 32  PRLSIQKDILTIKANTTLQITCR--GQRDLDWLWPNNQSGS--------EQRVEVTECSD 81

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI---KVETAVAQPDPVYLVAS 262
                 LTI  V  +D+G Y C  +         + +       + +   Q   VY+  +
Sbjct: 82  GLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITEN 141

Query: 263 LTTVVTI 269
               V I
Sbjct: 142 KNKTVVI 148

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 65.9 bits (160), Expect = 7e-12
 Identities = 19/148 (12%), Positives = 43/148 (29%), Gaps = 17/148 (11%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
                     ++   +     F  S + +     +T  +N+ V + C  + S +      
Sbjct: 107 ETDLASVIYVYVQDYR---SPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCA 163

Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
              +                    + +S    TI +  +S +G+  C AK       + +
Sbjct: 164 RYPEKRFVPDGN----------RISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIM 213

Query: 241 SLNVIKVETAVAQPDPVYLVASLTTVVT 268
            + V+           V L  S    ++
Sbjct: 214 YIVVVVGYRIY----DVVLSPSHGIELS 237

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 79.7 bits (197), Expect = 8e-18
 Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 8/109 (7%)

Query: 34  ECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRY----TFRKLINL 89
           +CP+ C C+      TV C  +    IP  + + T  L L+DN L R      F +L +L
Sbjct: 1   DCPAMCHCE----GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHL 56

Query: 90  VELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLN 138
           V+L+L  NQ+  +  +  +    ++EL+L  N I++I+++ F+ + +L 
Sbjct: 57  VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK 105

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 80.3 bits (198), Expect = 8e-18
 Identities = 23/127 (18%), Positives = 37/127 (29%), Gaps = 14/127 (11%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P ++     V   E   V ++C     P   I W    +++ +        N     I  
Sbjct: 20  PKLQG-PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPS-------SNYSNIKIYN 71

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTT 265
             S S L +   + +D G Y C A N  G+      L           P    +      
Sbjct: 72  TPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADT------PSSPSIDQVEPY 125

Query: 266 VVTIILT 272
             T  + 
Sbjct: 126 SSTAQVQ 132

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 81.8 bits (202), Expect = 1e-17
 Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 14/152 (9%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
           N + +IT  A + V + +       PNI         E     T+ C A+G+P P+I W 
Sbjct: 85  NSVGEITVHAKLTVLREDQLPSG-FPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWF 143

Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT-- 238
                +       +  N R   +++      L I +   +D G Y C A N AG  ++  
Sbjct: 144 KDFLPV-----DPSASNGRIKQLRS----GALQIESSEETDQGKYECVATNSAGVRYSSP 194

Query: 239 -NISLNVIKVETAVAQPDPVYLVASLTTVVTI 269
            N+ + V  V    +   P+         V I
Sbjct: 195 ANLYVRVQNVAPRFSIL-PMSHEIMPGGNVNI 225

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 79.9 bits (197), Expect = 4e-17
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 10/125 (8%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P       D         +  C+ATG P P++ W  K K +        N  + + I   
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV--------NSQRFETIEFD 58

Query: 206 INSLSNLTIVAV-TMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLT 264
            ++ + L I  + T  D  +Y C A+N  GE+  +  L V++ +   +   P   +    
Sbjct: 59  ESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGF-PNIDMGPQL 117

Query: 265 TVVTI 269
            VV  
Sbjct: 118 KVVER 122

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 73.3 bits (180), Expect = 8e-15
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 15/118 (12%)

Query: 137 LNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANM 196
           L +     +P    +          NV ++C A GSP+P +KW+   + +          
Sbjct: 197 LYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTP-------- 248

Query: 197 NKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQP 254
                +           +    + DS  YTC A +  G +     + V  +  A  + 
Sbjct: 249 EDDMPV-------GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKH 299

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 36/105 (34%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 36  PSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLVEL 92
           P            T  C   NF  IP+ L   T+ LDLS N L     Y+F     L  L
Sbjct: 2   PCVEVVP----NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVL 57

Query: 93  DLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
           DLS  +IQ +      S+  L  L L+GNPIQ +   AF  +  L
Sbjct: 58  DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.9 bits (169), Expect = 7e-13
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 69  QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
             LDLS   L       F  L +L  L++S+N    + +     +  L+ L  S N I  
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532

Query: 126 ITHEAFINVPK----LNLED--FACSPNIRP 150
              +   + P     LNL    FAC+   + 
Sbjct: 533 SKKQELQHFPSSLAFLNLTQNDFACTCEHQS 563

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 56  NFTTIPEQLDVGT--QVLDLSDNFL----DRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
              T+          + LD   + L    +   F  L NL+ LD+S+   +   + I + 
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 110 ILELRELKLSGNPIQK-ITHEAFINVPKL 137
           +  L  LK++GN  Q+    + F  +  L
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNL 472

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 69  QVLDLSDN----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
           +VL ++ N          F +L NL  LDLS  Q++ +     +S+  L+ L +S N   
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 125 KITHEAFINVPKL 137
            +    +  +  L
Sbjct: 508 SLDTFPYKCLNSL 520

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 69  QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
             L L+ N +       F  L +L +L      +  + +  +  +  L+EL ++ N IQ 
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 126 IT-HEAFINVPKL 137
               E F N+  L
Sbjct: 139 FKLPEYFSNLTNL 151

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 10/81 (12%)

Query: 69  QVLDLSDNFLDRY----TFRKLINLVELDLSYNQIQFVPSHILDSILELR----ELKLSG 120
           + L+++ N +  +     F  L NL  LDLS N+IQ +    L  + ++      L LS 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 121 NPIQKITHEAF--INVPKLNL 139
           NP+  I   AF  I + KL L
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTL 207

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 7/75 (9%)

Query: 69  QVLDLSDNFLDRY-----TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
           + LDLS N L        +     +L  LDLS+N +  + S+ L  + +L  L    + +
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNL 408

Query: 124 QKIT-HEAFINVPKL 137
           ++++    F+++  L
Sbjct: 409 KQMSEFSVFLSLRNL 423

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 8/80 (10%)

Query: 69  QVLDLSDNFLDRY------TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
            + +    +LD Y       F  L N+    L    I+ V     +     + L+L    
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--GWQHLELVNCK 315

Query: 123 IQKITHEAFINVPKLNLEDF 142
             +       ++ +L     
Sbjct: 316 FGQFPTLKLKSLKRLTFTSN 335

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 18/104 (17%)

Query: 56  NFTTIPE-------QLDVGTQVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQF-VPS 104
              +I         Q+ +    LDLS N +       F K I L +L L  N     V  
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMK 218

Query: 105 HILDSILELRELKLSGN------PIQKITHEAFINVPKLNLEDF 142
             +  +  L   +L          ++K    A   +  L +E+F
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 69  QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK--I 126
           Q L+L +    ++   KL +L  L  + N+     S     +  L  L LS N +     
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGC 364

Query: 127 THEAFINVPKL 137
             ++      L
Sbjct: 365 CSQSDFGTTSL 375

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 79.3 bits (195), Expect = 1e-17
 Identities = 17/116 (14%), Positives = 39/116 (33%), Gaps = 13/116 (11%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
               ++T +  ++V K           +   +      +   +T++C     P P ++W+
Sbjct: 88  LGETEVTKQEHLSVVK--------PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWL 139

Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
             E +    ++          + +   SLS    +++        TC  KN   E 
Sbjct: 140 MPEGVEPAPTAA-----NGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA 190

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 68.1 bits (166), Expect = 1e-13
 Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 11/117 (9%)

Query: 155 VTAEENENVTLSC---RATGSPVPKIKWIFKEKIIANISSG--------LANMNKRQYII 203
           VTA   E VTL+    R +  P  ++ W         +  G        +    +  + I
Sbjct: 1   VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60

Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLV 260
               +   L + A  +S  G Y CR K G  EV     L+V+K  T     +     
Sbjct: 61  HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFP 117

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 79.2 bits (195), Expect = 1e-17
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 13/99 (13%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
            +I     DV A   +NVTL C A G+PVP I+W    K++  + S            + 
Sbjct: 114 ADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWR---KVLEPMPST----------AEI 160

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
             S + L I  + + D GIY C A+N  G+      + V
Sbjct: 161 STSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 71.8 bits (176), Expect = 6e-15
 Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 18/141 (12%)

Query: 144 CSPNIRPITPDVTAEENENVTLSCRATGSPVP--KIKWIFKEKIIANISSGLANMNKRQY 201
             P      P+V  +E + + L C            +W+  E  +         M+KR++
Sbjct: 7   LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPV------FITMDKRRF 60

Query: 202 IIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV-ETAVAQPDPVYLV 260
           +     +  NL I  V  SD G Y+C   + +           +        +P P  +V
Sbjct: 61  VS---QTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIV 117

Query: 261 ASLTTVV-----TIILTACFV 276
                V       + L  CF 
Sbjct: 118 VQFKDVYALMGQNVTLE-CFA 137

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 78.7 bits (194), Expect = 2e-17
 Identities = 19/100 (19%), Positives = 43/100 (43%), Gaps = 8/100 (8%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
             +      +T  + + V L+C   G   P I+W+    ++ N+       ++    +  
Sbjct: 3   LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNL-------DQLYIPVSE 55

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNV 244
            + +  L++ +V  SD+G Y C+ ++G     +  + L V
Sbjct: 56  QHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTV 95

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 59.8 bits (145), Expect = 6e-11
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 20/93 (21%)

Query: 154 DVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
           D+    N    LSC A G P P  I W      I                     + S  
Sbjct: 107 DLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKI------------------GGPAPSPS 148

Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNV 244
            +    ++ S +++C A N  G   +   ++++
Sbjct: 149 VLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 78.5 bits (193), Expect = 2e-17
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSP-VPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
           P ++ +       E E   L C++   P V    W    KI  +    L N ++ ++ + 
Sbjct: 84  PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWY---KITDSEDKALMNGSESRFFVS 140

Query: 205 TINSLSNLTIVAVTM-SDSGIYTCRAKNGAGEVFTNISLNV 244
           +    S L I  + M +D G Y C   +  G     I+L V
Sbjct: 141 SSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 55.0 bits (132), Expect = 3e-09
 Identities = 7/85 (8%), Positives = 16/85 (18%), Gaps = 18/85 (21%)

Query: 156 TAEENENVTLSCRATGSPVPKI--KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
             +    + L+C    S       +W+    ++                           
Sbjct: 9   VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKE----------------DALPGQKTE 52

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFT 238
               +    G Y+C           
Sbjct: 53  FKVDSDDQWGEYSCVFLPEPMGTAN 77

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 81.8 bits (202), Expect = 2e-17
 Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 22/129 (17%)

Query: 121 NPIQKITHEAFINV--PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIK 178
           N +  I H   + V             P       ++     E+  L CRA G+P P ++
Sbjct: 296 NKMGSIRHTISVRVKAA----------PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQ 345

Query: 179 WIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT 238
           W+   + +                 +       +      +S   +Y C   N  G +  
Sbjct: 346 WMVNGEPL--------QSAPPNPNREVAGD--TIIFRDTQISSRAVYQCNTSNEHGYLLA 395

Query: 239 NISLNVIKV 247
           N  ++V+ V
Sbjct: 396 NAFVSVLDV 404

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 74.1 bits (182), Expect = 7e-15
 Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 14/122 (11%)

Query: 125 KITHEAFINVPKLNLEDFACSPNIRPITP--DVTAEENENVTLSCRATGSPVPKIKWIFK 182
           +  +   + V             + P             ++ L C A+G P P I W  K
Sbjct: 200 QQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKK 259

Query: 183 EKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISL 242
              + +  +   N NK             L I  V+  DSG Y C A N  G +   IS+
Sbjct: 260 GGDLPSDKAKFENFNK------------ALRITNVSEEDSGEYFCLASNKMGSIRHTISV 307

Query: 243 NV 244
            V
Sbjct: 308 RV 309

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 8/109 (7%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL-SNL 212
           D   +  +N+ + C A G+P P   W    +            + R  + +   +L  + 
Sbjct: 26  DHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNI------AKDPRVSMRRRSGTLVIDF 79

Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNVIKVETAVAQPDPVYLV 260
                     G Y C A+N  G   +N I L V K      +     +V
Sbjct: 80  RSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVV 128

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 56.4 bits (136), Expect = 4e-09
 Identities = 26/161 (16%), Positives = 46/161 (28%), Gaps = 25/161 (15%)

Query: 126 ITHEAFINVPKLNLEDFACSPNIRPITPD-VTAEENENVTLSCRAT-GSPVPKIKWIFKE 183
           +++   + V K         P       D V  +E   +TL C    G P P I W+   
Sbjct: 104 LSNRIRLQVSKS--------PLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSS 155

Query: 184 KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS-GIYTCRAKNGAGEVF---TN 239
                        +KR           +L    V + D    Y+C A+            
Sbjct: 156 MEPITQ-------DKRVSQGHN----GDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNP 204

Query: 240 ISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCI 280
            +L V+       +           +   ++     ++ CI
Sbjct: 205 FTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECI 245

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 80.6 bits (199), Expect = 3e-17
 Identities = 29/126 (23%), Positives = 42/126 (33%), Gaps = 12/126 (9%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           ++      N TL C+ TG P P +KW  + K I            +  I +       L 
Sbjct: 13  NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGL-------KYRIQEFKGGYHQLI 65

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVV---TII 270
           I +VT  D+ +Y  RA N  G V    SL V     A                +    + 
Sbjct: 66  IASVTDDDATVYQVRATNQGGSVSGTASLEV--EVPAKIHLPKTLEGMGAVHALRGEVVS 123

Query: 271 LTACFV 276
           +   F 
Sbjct: 124 IKIPFS 129

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 78.3 bits (193), Expect = 2e-16
 Identities = 34/139 (24%), Positives = 50/139 (35%), Gaps = 23/139 (16%)

Query: 121 NPIQKITHEAFINV---PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKI 177
           N    ++  A + V    K++L               V A   E V++    +G P P I
Sbjct: 83  NQGGSVSGTASLEVEVPAKIHLPKTLEGMG------AVHALRGEVVSIKIPFSGKPDPVI 136

Query: 178 KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
            W   + +I N        N    +I T +  S +    V   D+G Y   AKN  G   
Sbjct: 137 TWQKGQDLIDN--------NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQ 188

Query: 238 TNISLNVIKVETAVAQPDP 256
             + L+V  V      PDP
Sbjct: 189 KTVELDVADV------PDP 201

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 82.2 bits (203), Expect = 3e-17
 Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 8/125 (6%)

Query: 18  VYIMVLVCTGCLQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF 77
           V     VC   L V +  P + E      +  V    +N T +P+ L   T+ L LS N 
Sbjct: 9   VGSFHFVCALALIVGSMTPFSNE-----LESMVDYSNRNLTHVPKDLPPRTKALSLSQNS 63

Query: 78  ---LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINV 134
              L       L  L  L LS+N+I+ +  H+     +L  L +S N +Q I+     ++
Sbjct: 64  ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASL 123

Query: 135 PKLNL 139
             L+L
Sbjct: 124 RHLDL 128

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.2 bits (151), Expect = 9e-11
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKL-INLVELDLSYNQIQFVPSHILDSILELR 114
                 E +     VL+LS N L    FR L   +  LDL  N+I  +P  +   +  L+
Sbjct: 422 RTCAWAESI----LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDV-THLQALQ 476

Query: 115 ELKLSGNPIQKITHEAFINVPKL 137
           EL ++ N ++ +    F  +  L
Sbjct: 477 ELNVASNQLKSVPDGVFDRLTSL 499

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.8 bits (137), Expect = 4e-09
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 57  FTTIPEQLDVGTQVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDSILELR 114
           F  +P ++    +VLDL +N +         L  L EL+++ NQ++ VP  + D +  L+
Sbjct: 445 FRCLPPKV----KVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQ 500

Query: 115 ELKLSGNP 122
            + L  NP
Sbjct: 501 YIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 5/79 (6%)

Query: 68  TQVLDLSDNFLDRYT---FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
             +  LS +              +   L+ + N           ++  L+ L L  N ++
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

Query: 125 KITHEAFI--NVPKLNLED 141
                A +  N+  L   D
Sbjct: 391 NFFKVALMTKNMSSLETLD 409

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 9/82 (10%), Positives = 20/82 (24%), Gaps = 5/82 (6%)

Query: 69  QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
            +  + +    F     +     +    LS +   F+      S      L  + N    
Sbjct: 308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD 367

Query: 126 ITHEAFINVPKLNLEDFACSPN 147
              +    +    L+      N
Sbjct: 368 SVFQGCSTLK--RLQTLILQRN 387

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 9/82 (10%), Positives = 19/82 (23%), Gaps = 4/82 (4%)

Query: 53  KAKNFTTIPEQLDVGTQVLDLSDNFLDR---YTFRKLINLVELDLSYNQIQFVPSHILDS 109
                  +          L+ + N            L  L  L L  N ++         
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA-LM 398

Query: 110 ILELRELKLSGNPIQKITHEAF 131
              +  L+     +  +   A+
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAY 420

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 81.0 bits (200), Expect = 4e-17
 Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 21/154 (13%)

Query: 126 ITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKI 185
           I+  A + V                 T  +TA   + V L C   G P+P I W   ++ 
Sbjct: 110 ISRTAKVMVAGP--------LRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQD 161

Query: 186 IANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNV 244
           +  I       + R  ++ +      L I  +   DSG+Y C A+N A     N   + +
Sbjct: 162 LNPIPG-----DSRVVVLPS----GALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRI 212

Query: 245 IKVETAVAQPDPVYLVASLTTVV--TIILTACFV 276
           +       Q   +   +++  +     +L  C V
Sbjct: 213 LSDPGLHRQLYFLQRPSNVIAIEGKDAVLE-CCV 245

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 79.5 bits (196), Expect = 1e-16
 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 13/121 (10%)

Query: 124 QKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE 183
            +  +EA + +  L+               +V A E ++  L C  +G P P   W+  E
Sbjct: 202 TRTGNEAEVRI--LSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGE 259

Query: 184 KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLN 243
           ++I         +  ++Y +      SNL I  VT  DSG YTC        +  +  L 
Sbjct: 260 EVI--------QLRSKKYSL---LGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELT 308

Query: 244 V 244
           V
Sbjct: 309 V 309

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 74.5 bits (183), Expect = 6e-15
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 12/93 (12%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           ++ A E+ ++   C  +G PVP + W+    ++          +    I+      SNL 
Sbjct: 321 NLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIP--------SDYFQIVGG----SNLR 368

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
           I+ V  SD G Y C A+N AG   ++  L V K
Sbjct: 369 ILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 29/147 (19%), Positives = 47/147 (31%), Gaps = 20/147 (13%)

Query: 120 GNPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGS-PVPKIK 178
           G+ ++   H       +        S +      D       NV L+C A     VP IK
Sbjct: 4   GSELESSHHHHHHGGRR--------SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIK 55

Query: 179 WIFKEKIIANISSGLANMNKRQYIIKTINSL--SNLTIVAVTMSDSGIYTCRAKNGAGE- 235
           W     I+A        M+ R+  +    SL   N+        D G+Y C A  G    
Sbjct: 56  WKKDGLILAL------GMDDRKQQLPN-GSLLIQNILHSRHHKPDEGLYQCEASLGDSGS 108

Query: 236 -VFTNISLNVIKVETAVAQPDPVYLVA 261
            +     + V      ++Q + +    
Sbjct: 109 IISRTAKVMVAGPLRFLSQTESITAFM 135

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 75.1 bits (185), Expect = 4e-17
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 14/101 (13%)

Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
           S +             + + L CR        I W  ++ +   ++      + R  I  
Sbjct: 3   SGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINW-LRDGV--QLAE-----SNRTRI-- 51

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
              +   + +     +DSG+Y C   + +G   T  S+NV 
Sbjct: 52  ---TGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 75.2 bits (185), Expect = 4e-17
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
           IT   +   + +  +     G+P P ++W +   I+         +  + ++        
Sbjct: 7   ITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESK----YICTKIHVTNHTEYHG 62

Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
            L +   T  ++G YT  AKN  G+    IS + +
Sbjct: 63  CLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM 97

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 78.0 bits (192), Expect = 5e-17
 Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 19/101 (18%)

Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
              I            + V L CRATG P  + +W    K I N ++             
Sbjct: 18  GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTS------------ 65

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNV 244
                  L   AV + D+G Y CR  N     F+    L+V
Sbjct: 66  ------ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDV 100

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 75.3 bits (185), Expect = 4e-16
 Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 25/140 (17%)

Query: 124 QKITHEAFINV---PKLNLEDFACSPNIRP---ITP-DVTAEENENVTLSCRATGSPVPK 176
            + +  + ++V   P+            +    + P          + L C A GSP+P 
Sbjct: 90  FEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPH 149

Query: 177 IKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
            +W   E  + + +                       +  V +   G Y C   N     
Sbjct: 150 YQWFKNELPLTHETKK------------------LYMVPYVDLEHQGTYWCHVYNDRDSQ 191

Query: 237 FTNISLNVIKVETAVAQPDP 256
            +     +I     +  PD 
Sbjct: 192 DSKKVEIIIDELNNLGHPDN 211

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 74.9 bits (184), Expect = 8e-17
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 5/106 (4%)

Query: 151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
           +      E      +     G+P P + W+   + +       + +   +Y  +   S  
Sbjct: 11  VVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRE-----SKIIHVEYYQEGEISEG 65

Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDP 256
            L     T  ++G YT  AKN  G     I+ + +K    V +  P
Sbjct: 66  CLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSP 111

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 80.1 bits (197), Expect = 1e-16
 Identities = 21/129 (16%), Positives = 37/129 (28%), Gaps = 16/129 (12%)

Query: 121 NPIQKITHEAFINV---PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPK- 176
           N          + V     +N+           I   V   + ENV L       P P+ 
Sbjct: 294 NTFGSANVTTTLEVVDKGFINIF--------PMINTTVFVNDGENVDLIVEYEAFPKPEH 345

Query: 177 IKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
            +WI+  +   +                 I  +S L +  +  ++ G YT    N     
Sbjct: 346 QQWIYMNRTFTDKWEDYPKSENES----NIRYVSELHLTRLKGTEGGTYTFLVSNSDVNA 401

Query: 237 FTNISLNVI 245
               ++ V 
Sbjct: 402 AIAFNVYVN 410

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 78.2 bits (192), Expect = 5e-16
 Identities = 22/127 (17%), Positives = 35/127 (27%), Gaps = 17/127 (13%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
           N          + V            N +P    +T +   N  L C A G P P I W 
Sbjct: 396 NSDVNAAIAFNVYV------------NTKP--EILTYDRLVNGMLQCVAAGFPEPTIDWY 441

Query: 181 FKEKIIANISSGLA---NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
           F        S+ +                  +   +I +     +G   C+A N  G+  
Sbjct: 442 FCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTS 501

Query: 238 TNISLNV 244
              +   
Sbjct: 502 AYFNFAF 508

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 74.7 bits (183), Expect = 8e-15
 Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 5/101 (4%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIK 204
           P +          E E  T++C            W  +              N   +   
Sbjct: 212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQE----KYNSWHHGDF 267

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
                + LTI +  ++DSG++ C A N  G      +L V+
Sbjct: 268 NYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV 308

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 62.0 bits (150), Expect = 1e-10
 Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 24/123 (19%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P+I P   D+     + + L C   G     +KW F+     N +               
Sbjct: 37  PSIHPGKSDLIVRVGDEIRLLCTDPGF----VKWTFEILDETNENKQ------------- 79

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTT 265
               +         +++G YTC  K+G      +I + V            +Y      T
Sbjct: 80  ----NEWITEKAEATNTGKYTCTNKHGLS---NSIYVFVRDPAKLFLVDRSLYGKEDNDT 132

Query: 266 VVT 268
           +V 
Sbjct: 133 LVR 135

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 13/123 (10%), Positives = 33/123 (26%), Gaps = 14/123 (11%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
             +  +   +  +E+ +  + C  T   V        +             + R      
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPK-------DLRF----I 163

Query: 206 INSLSNLTIVAVTMS-DSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLT 264
            +  + + I +V  +       C        V +     ++KV  A      V +  +  
Sbjct: 164 PDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEK--FILKVRPAFKAVPVVSVSKASY 221

Query: 265 TVV 267
            + 
Sbjct: 222 LLR 224

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 76.4 bits (188), Expect = 1e-16
 Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 8/115 (6%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSP-VPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
             +  +         E+    C+  G      I W             L+   +R  ++ 
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEK------LSPNQQRISVVW 56

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNVIKVETAVAQPDPVY 258
             +  S LTI    + D+GIY C      G      +++ + +       P P  
Sbjct: 57  NDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQE 111

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 76.0 bits (187), Expect = 2e-16
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 10/100 (10%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
              +        +E E+  + C    S  P I W  K + +      +   + R  ++  
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDV------ILKKDVRFIVLSN 154

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
               + L I  +  +D G Y C  +  A        + VI
Sbjct: 155 ----NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 79.7 bits (196), Expect = 1e-16
 Identities = 16/135 (11%), Positives = 45/135 (33%), Gaps = 15/135 (11%)

Query: 138 NLEDFACSPNIR--PIT---PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSG 192
           + ED  C+   +          V  + + ++TL             W+FK          
Sbjct: 36  SPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHS-------- 87

Query: 193 LANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVA 252
             ++N + +       + ++ I+ +T + +G Y    ++ A       ++++        
Sbjct: 88  --SLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTL 145

Query: 253 QPDPVYLVASLTTVV 267
           +      + +   +V
Sbjct: 146 RRPYFRKMENQDALV 160

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 70.5 bits (172), Expect = 1e-13
 Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 13/99 (13%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
            N    + D   ++ E    S R    P  +  W F  K                   K 
Sbjct: 327 INATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE-------------QKG 373

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           +++  +++         G Y   A+N   +     +LN+
Sbjct: 374 LDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 69.3 bits (169), Expect = 3e-13
 Identities = 14/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 145 SPNIRPITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYII 203
           +   +   P +  +  E + + C+A   +    + W  + K +   +    +       +
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286

Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASL 263
             I       + +V  +D+G YTC +     +   +  + +++     A           
Sbjct: 287 IRI---LFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGFINATNSSEDYEIDQ 340

Query: 264 TTVVTI 269
                 
Sbjct: 341 YEEFCF 346

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 57.8 bits (139), Expect = 2e-09
 Identities = 16/135 (11%), Positives = 36/135 (26%), Gaps = 22/135 (16%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
           +     T    +++          +       P     EN+   L C +   P P ++W+
Sbjct: 124 SEATNYTILFTVSIRN--------TLLYTLRRPYFRKMENQ-DALVCISESVPEPIVEWV 174

Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
             +    +         +   ++K    +       +         C A+N  G   T +
Sbjct: 175 LCDSQGESCK------EESPAVVKKEEKV-------LHELFGTDIRCCARNELGRECTRL 221

Query: 241 SLNVIKVETAVAQPD 255
               +        P 
Sbjct: 222 FTIDLNQTPQTTLPQ 236

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 78.2 bits (192), Expect = 1e-16
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 4/104 (3%)

Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
           S N+          + EN+TL C   G+ V   +W +  K    +   + +         
Sbjct: 181 SINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHI 240

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE 248
                S L I +  + DSG YTC       +     ++N+  VE
Sbjct: 241 R----SILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVE 280

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 59.7 bits (144), Expect = 3e-10
 Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 14/100 (14%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
           + P  P++    +    L+C  +      + W    +             +     +   
Sbjct: 3   VTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEP----------PQEMAKAQDGT 48

Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV 247
             S LT+  +T  D+G Y C   +  G          I V
Sbjct: 49  FSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFV 88

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 52.8 bits (126), Expect = 5e-08
 Identities = 11/102 (10%), Positives = 26/102 (25%), Gaps = 19/102 (18%)

Query: 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL 209
                +   E   +T+ CR T  P   +                      +     +   
Sbjct: 100 AEELFIFLTEITEITIPCRVTD-PQLVVTL------------------HEKKGDVALPVP 140

Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAV 251
            +       + +   Y C+   G  EV ++         +++
Sbjct: 141 YDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSI 182

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 35/133 (26%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDR-------------- 80
           CPS C C        + C +K  T++P  +      L+L  N L                
Sbjct: 1   CPSRCSCSGT----EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTK 56

Query: 81  ---------------YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
                           +     +L  LDLS+N +  + S+    + +L  L    + +++
Sbjct: 57  LSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQ 115

Query: 126 ITHE-AFINVPKL 137
           ++    F+++  L
Sbjct: 116 MSEFSVFLSLRNL 128

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.7 bits (179), Expect = 1e-14
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 69  QVLDLSDN----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
           +VL ++ N          F +L NL  LDLS  Q++ +     +S+  L+ L +S N   
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212

Query: 125 KITHEAFINVPKL 137
            +    +  +  L
Sbjct: 213 SLDTFPYKCLNSL 225

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.4 bits (173), Expect = 7e-14
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 69  QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
             LDLS      L    F  L +L  L++S+N    + +     +  L+ L  S N I  
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237

Query: 126 ITHEAFINVPK----LNLED--FACSPNIRP 150
              +   + P     LNL    FAC+   + 
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDFACTCEHQS 268

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.7 bits (166), Expect = 6e-13
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 69  QVLDLSDNFL----DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP-I 123
           + LD   + L    +   F  L NL+ LD+S+   +   + I + +  L  LK++GN   
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163

Query: 124 QKITHEAFINVPKL 137
           +    + F  +  L
Sbjct: 164 ENFLPDIFTELRNL 177

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 72.8 bits (179), Expect = 2e-16
 Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 18/92 (19%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
                    + L C A GSP+P  +W   E  + + +  L                    
Sbjct: 12  SQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL------------------YM 53

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
           +  V +   G Y C   N      +     +I
Sbjct: 54  VPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII 85

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 73.8 bits (181), Expect = 2e-16
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 14/105 (13%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIK 204
           P I   T    A   E   + C    +P P +I W +KE ++ + +SG       +Y ++
Sbjct: 15  PIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSG-------RYTVE 66

Query: 205 TINS----LSNLTIVAVTMSD-SGIYTCRAKNGAGEVFTNISLNV 244
           TI++    +S LTI  +  +D   IY C A N  G     I L  
Sbjct: 67  TISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 73.6 bits (180), Expect = 3e-16
 Identities = 24/105 (22%), Positives = 35/105 (33%), Gaps = 5/105 (4%)

Query: 145 SPNIRPIT----PDVTAEENENVTLSCRATGSPVPKIKWI-FKEKIIANISSGLANMNKR 199
              I  +       +     E + L+C A       I +              +    K 
Sbjct: 4   GYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKT 63

Query: 200 QYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           Q   +    LS LTI  VT SD G+YTC A +G      +  + V
Sbjct: 64  QSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 108

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 75.4 bits (185), Expect = 3e-16
 Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 19/96 (19%)

Query: 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL 209
               D    + +++TL+  +     P ++                    R    K I   
Sbjct: 102 TANSDTHLLQGQSLTLTLESPPGSSPSVQC-------------------RSPRGKNIQGG 142

Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
             L++  + + DSG +TC       +V   I + V+
Sbjct: 143 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL 178

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 68.5 bits (167), Expect = 6e-14
 Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 8/113 (7%)

Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKII------ANISSGLANMNKRQYIIKTINS 208
           V  ++ + V L+C A+     +  W    +I       + ++ G + +N R    +++  
Sbjct: 5   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64

Query: 209 LSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYL 259
             N  L I  + + DS  Y C  ++   EV   +       +T + Q   + L
Sbjct: 65  QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTL 117

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 78.3 bits (193), Expect = 3e-16
 Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 21/125 (16%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
           N   K   +  +             PN   I  D+     E+V   C+A G P P  +W 
Sbjct: 279 NSRGKNVAKGQLTF--------YAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRW- 329

Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
            K         G   + + +  I+       L I  V +SD+G+Y C A+N  G +F++ 
Sbjct: 330 LKN--------GDPLLTRDRIQIEQ----GTLNITIVNLSDAGMYQCVAENKHGVIFSSA 377

Query: 241 SLNVI 245
            L+VI
Sbjct: 378 ELSVI 382

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 76.0 bits (187), Expect = 2e-15
 Identities = 27/100 (27%), Positives = 35/100 (35%), Gaps = 13/100 (13%)

Query: 146 PNIRPITP-DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
           P I    P  V AE+   V L C A G+PVP I W   +       +            +
Sbjct: 205 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKA------------R 252

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
              S   L I      D+G Y C A+N  G+      L  
Sbjct: 253 RHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTF 292

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 31/131 (23%), Positives = 45/131 (34%), Gaps = 20/131 (15%)

Query: 154 DVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
            V+    + + L C     S      WIF E             N+R    +T     NL
Sbjct: 111 TVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQ-------DNRRFVSQET----GNL 159

Query: 213 TIVAVTMSDSGIYTCRAKNGAGE--VFTNISLNVIKVETAVAQPDPVYLVASLTTVV--- 267
            I  V  SD G YTC   N      V    +  +++ +  + + +P   V    TV    
Sbjct: 160 YIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEK 219

Query: 268 --TIILTACFV 276
             T+ L  CF 
Sbjct: 220 GTTVKLE-CFA 229

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 23/107 (21%), Positives = 34/107 (31%), Gaps = 11/107 (10%)

Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTI 214
               E + V LSC   G+P P I+W      +        ++           SL  L  
Sbjct: 18  PLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDV--------DIGMDFRYSVVDGSL--LIN 67

Query: 215 VAVTMSDSGIYTCRAKNGAGEVFT-NISLNVIKVETAVAQPDPVYLV 260
                 D+G Y C A N  G + +    L    +E    +      V
Sbjct: 68  NPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSV 114

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.0 bits (195), Expect = 3e-16
 Identities = 25/126 (19%), Positives = 41/126 (32%), Gaps = 29/126 (23%)

Query: 39  CECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL-------------------- 78
           C         T  C   NF  IP+ L   T+ LDLS N L                    
Sbjct: 3   CVEVVPN--ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 60

Query: 79  -------DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAF 131
                  +   ++ L +L  L L+ N IQ +       +  L++L      +  + +   
Sbjct: 61  RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120

Query: 132 INVPKL 137
            ++  L
Sbjct: 121 GHLKTL 126

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 15/119 (12%)

Query: 69  QVLDLSDN----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
           +VL ++ N          F +L NL  LDLS  Q++ +     +S+  L+ L ++ N ++
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

Query: 125 KITHEAFINVPKL---NLED--FACS-PNIRPIT---PDVTAEENENVTLSCRATGSPV 174
            +    F  +  L    L    + CS P I  ++      + +E  +    C  +G PV
Sbjct: 508 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAK--CSGSGKPV 564

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 71.7 bits (176), Expect = 8e-14
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 56  NFTTIPEQLD--VGTQVLDLSDNFL----DRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
              T+          + LD   + L    +   F  L NL+ LD+S+   +   + I + 
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 110 ILELRELKLSGNPIQK-ITHEAFINVPKL 137
           +  L  LK++GN  Q+    + F  +  L
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNL 472

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 69  QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
             L L+ N    L    F  L +L +L      +  + +  +  +  L+EL ++ N IQ 
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 126 I-THEAFINVPKL 137
               E F N+  L
Sbjct: 139 FKLPEYFSNLTNL 151

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 10/83 (12%)

Query: 69  QVLDLSDNFLDR----YTFRKLINLVELDLSYNQIQFVPSHILDSILELR----ELKLSG 120
           + L+++ N +        F  L NL  LDLS N+IQ +    L  + ++      L LS 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 121 NPIQKITHEAF--INVPKLNLED 141
           NP+  I   AF  I + KL L +
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRN 209

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 7/75 (9%)

Query: 69  QVLDLSDNFLDR-----YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
           + LDLS N L        +     +L  LDLS+N +  + S+ L  + +L  L    + +
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNL 408

Query: 124 QKITHE-AFINVPKL 137
           ++++    F+++  L
Sbjct: 409 KQMSEFSVFLSLRNL 423

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 56  NFTTIPE-QLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELR 114
               + +   + G Q L+L +    ++   KL +L  L  + N+     S     +  L 
Sbjct: 293 TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLE 350

Query: 115 ELKLSGNPIQKITHEAFINVPKLNLEDFACSPN 147
            L LS N +      +  +    +L+    S N
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 18/104 (17%)

Query: 56  NFTTIPE-------QLDVGTQVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQF-VPS 104
              +I         Q+ +    LDLS N +       F+++  L +L L  N     V  
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMK 218

Query: 105 HILDSILELRELKL------SGNPIQKITHEAFINVPKLNLEDF 142
             +  +  L   +L      +   ++K    A   +  L +E+F
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 72.9 bits (179), Expect = 4e-16
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 7/102 (6%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P I     D+   + E  TL+C+A G P P I+W    K    + +   +    + ++ +
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEW---YKGGERVETDKDDPRSHRMLLPS 66

Query: 206 INSLSNLTIVA--VTMSDSGIYTCRAKNGAGEVFT-NISLNV 244
             SL  L IV    +  D G+Y C A+N  GE  + + SL V
Sbjct: 67  -GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 75.3 bits (185), Expect = 6e-16
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P I     D+  ++NE  TL+C+  G P P I+W    + ++            +   K 
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVST-----NEKKSHRVQFKD 64

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNV 244
                  T+      D G Y C AKN  G+  + + SL +
Sbjct: 65  GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 73.7 bits (181), Expect = 2e-15
 Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 146 PNIRPITPDVTAEENENVTLSC-RATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
            + R    D    + E   L C    G P P + WI     + ++ +     + R  I+ 
Sbjct: 109 DDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVD 168

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN 239
                 NL I  V   D G Y C A+N  G   ++
Sbjct: 169 G----GNLLISNVEPIDEGNYKCIAQNLVGTRESS 199

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 72.7 bits (178), Expect = 6e-16
 Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 2/118 (1%)

Query: 151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
                TA E  +  +     G P P ++W+F   ++    +        +          
Sbjct: 6   SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVL--NETSFIFTEFLEPAANETVRHG 63

Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVT 268
            L +   T  ++G YT  A N  G+   +I    +         DP+    S +    
Sbjct: 64  CLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSGDPV 121

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 76.8 bits (189), Expect = 8e-16
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 21/124 (16%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
           N   + T++  I +           P+   +  D  A+   ++  SC A+G P P ++W 
Sbjct: 278 NIKGRDTYQGRIIIHAQ--------PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRW- 328

Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
            ++        G    ++ +  +        L    + + DSG+Y C A+N  G V+ + 
Sbjct: 329 LRD--------GQPLASQNRIEVSG----GELRFSKLVLEDSGMYQCVAENKHGTVYASA 376

Query: 241 SLNV 244
            L V
Sbjct: 377 ELTV 380

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 75.3 bits (185), Expect = 3e-15
 Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 19/128 (14%)

Query: 121 NPIQKITHEAFINVPKLNL---EDFACSPNIRPITP-DVTAEENENVTLSCRATGSPVPK 176
           + I  IT   F    +L+L   +    +P+I+   P D  A   + VTL C A G+PVP+
Sbjct: 179 SHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQ 238

Query: 177 IKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
           IKW  K                     K ++S   L I  V   D G Y C A+N  G  
Sbjct: 239 IKW-RK--------------LDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRD 283

Query: 237 FTNISLNV 244
                + +
Sbjct: 284 TYQGRIII 291

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 61.8 bits (150), Expect = 9e-11
 Identities = 26/145 (17%), Positives = 39/145 (26%), Gaps = 20/145 (13%)

Query: 142 FACSPNIRPITPD-VTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKR 199
           F           D V   E   V  +C      P    +W+  E         +    +R
Sbjct: 97  FGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNF-----IPADGRR 151

Query: 200 QYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV----IKVETAVAQPD 255
                T     NL I     SD G Y+C A +    +  ++        +  E A     
Sbjct: 152 FVSQTT----GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAP 207

Query: 256 PVYLVASLTTVV----TIILTACFV 276
            +       T       + L  CF 
Sbjct: 208 SIKAKFPADTYALTGQMVTLE-CFA 231

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 21/103 (20%), Positives = 29/103 (28%), Gaps = 14/103 (13%)

Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTI 214
                 E VTL+CRA  +P    +W      +         M            L  +  
Sbjct: 17  PEGSAEEKVTLTCRARANPPATYRWKMNGTEL--------KMGPDSRYRLVAGDL--VIS 66

Query: 215 VAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPV 257
             V   D+G Y C A N  G V +        +     Q    
Sbjct: 67  NPVKAKDAGSYQCVATNARGTVVS----REASLRFGFLQEFSA 105

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 72.0 bits (177), Expect = 8e-16
 Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 13/109 (11%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
           I  +  DV  +E  + T  CR + +    + W   +  +          N+   I     
Sbjct: 17  IEDLE-DVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHA--------NELNEIDAQPG 67

Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDP 256
               LT+  + + DSG         AG+   + +L V +  +  ++  P
Sbjct: 68  GYHVLTLRQLALKDSGTIYFE----AGDQRASAALRVTEKPSVFSRSGP 112

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 75.4 bits (186), Expect = 9e-16
 Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 29/135 (21%)

Query: 30  QVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN------------- 76
            +  +    C C     K +V C +K  T IP  +   T+ LDL  N             
Sbjct: 3   ALCKKDGGVCSCN--NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRL 60

Query: 77  --------------FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
                          L    F++L NL  L ++ N++Q +P  + D ++ L EL+L  N 
Sbjct: 61  TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120

Query: 123 IQKITHEAFINVPKL 137
           ++ +    F ++ KL
Sbjct: 121 LKSLPPRVFDSLTKL 135

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 6/97 (6%)

Query: 48  ETVLCKAKNFTTIPEQLDVG---TQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQF 101
           ET+         +P  +         L L  N    L    F  L  L  L L YN++Q 
Sbjct: 88  ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147

Query: 102 VPSHILDSILELRELKLSGNPIQKITHEAFINVPKLN 138
           +P  + D +  L+EL+L  N ++++   AF  + +L 
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 69  QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
             L L  N    L +  F KL +L EL L  NQ++ VP    D + EL+ LKL  N +++
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195

Query: 126 ITHEAFINVPKLN 138
           +   AF ++ KL 
Sbjct: 196 VPEGAFDSLEKLK 208

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 69  QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
           + L L +N L       F KL  L  L L  NQ++ VP    DS+ +L+ L+L  NP
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 76.5 bits (188), Expect = 1e-15
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 14/97 (14%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
            +     +  ++ ++VT+ C+ TG P P + W    K ++            +  +    
Sbjct: 312 EQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG----------GRATVTD-- 359

Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
             S L I  V   D G Y CRA N  G+ +    + V
Sbjct: 360 --SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 75.7 bits (186), Expect = 2e-15
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 8/100 (8%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P  + ++ D+ A+  +   + C    +P+    +    K +             +     
Sbjct: 213 PVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPED-------RITRHN 265

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNV 244
             S   L        D G+YTC   NG G+   + + L V
Sbjct: 266 RTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 305

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 68.8 bits (168), Expect = 4e-13
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 12/118 (10%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIK 204
           P ++    +V   EN    L C   G+    K  W    K          N  +    ++
Sbjct: 7   PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSY--------NWQEHNAALR 58

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNVIKVETAVAQPDPVYLVA 261
                 +L  +    SD G Y C A+  AG   +  IS     +  + A+      + 
Sbjct: 59  KDEG--SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIE 114

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 64.2 bits (156), Expect = 2e-11
 Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 6/131 (4%)

Query: 142 FACSPNIRPITPDVTAEENENVTLSCR-ATGSPVPKIKWIFKEKIIANISSGLANMNKRQ 200
                     T + T  E     L C      P P I W  K    A+ ++ + + ++R 
Sbjct: 97  KTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITW-KKRLSGADPNADVTDFDRRI 155

Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE---VFTNISLNVIKVETAVAQPDPV 257
                  +L    +    +SD   Y C AKN A +   V     +  +  + +  + +PV
Sbjct: 156 TAGPD-GNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPV 214

Query: 258 YLVASLTTVVT 268
               S   +  
Sbjct: 215 PQYVSKDMMAK 225

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 75.5 bits (185), Expect = 1e-15
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 3/101 (2%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIK 204
           P +         ++ +  T+ C            W+       +I+    N   R     
Sbjct: 189 PVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNY 248

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
                  LTI +  + DSG++ C A N  G      +L V+
Sbjct: 249 ERQE--TLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 60.5 bits (146), Expect = 2e-10
 Identities = 14/123 (11%), Positives = 32/123 (26%), Gaps = 12/123 (9%)

Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
              +  +   +  +E+ +  + C  T   V +   I  +              K    IK
Sbjct: 91  PAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIK 150

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLT 264
                                 C A+     + ++     +KV  A+     V +  +  
Sbjct: 151 N----------VKRAYHRLCVRCAAQRDGTWLHSDKFT--LKVREAIKAIPVVSVPETSH 198

Query: 265 TVV 267
            + 
Sbjct: 199 LLK 201

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 57.8 bits (139), Expect = 1e-09
 Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 23/123 (18%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P+I P   ++  E  + ++L+C         ++W FK                       
Sbjct: 13  PSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYFNE----------------MV 52

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTT 265
            N  +         + +G YTC   NG     ++I + V           P++       
Sbjct: 53  ENKKNEWIQEKAEATRTGTYTCSNSNGLT---SSIYVFVRDPAKLFLVGLPLFGKEDSDA 109

Query: 266 VVT 268
           +V 
Sbjct: 110 LVR 112

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 74.1 bits (181), Expect = 1e-15
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 3/96 (3%)

Query: 152 TPDVTAEENENVTLSCRATGSP--VPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL 209
           +  +     E + L+C A           W +      +    +    K Q   +    L
Sbjct: 112 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKL-VNRDLKTQSGSEMKKFL 170

Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
           S LTI  VT SD G+YTC A +G      +  + V 
Sbjct: 171 STLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 206

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 55.2 bits (132), Expect = 4e-09
 Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 10/104 (9%)

Query: 142 FACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQY 201
           F  S + +     +T  +N+ V + C  +      +    +      +  G         
Sbjct: 6   FIASVSDQHGVVYITENKNKTVVIPCLGS-ISNLNVSLCARYPEKRFVPDG--------- 55

Query: 202 IIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
              + +S    TI +  +S +G+  C AK       + + + V+
Sbjct: 56  NRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 99

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 77.0 bits (189), Expect = 1e-15
 Identities = 14/123 (11%), Positives = 40/123 (32%), Gaps = 10/123 (8%)

Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
           S         V  + + ++TL             W+FK            ++N + +   
Sbjct: 48  SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHS----------SLNCQPHFDL 97

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLT 264
               + ++ I+ +T + +G Y    ++ A       ++++        +      + +  
Sbjct: 98  QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQD 157

Query: 265 TVV 267
            +V
Sbjct: 158 ALV 160

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 74.0 bits (181), Expect = 1e-14
 Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 13/113 (11%)

Query: 147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI 206
           N    + D   ++ E    S R    P  +  W F  K                   K +
Sbjct: 328 NATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ-------------KGL 374

Query: 207 NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYL 259
           ++  +++         G Y   A+N   +     +LN+ +    +A+      
Sbjct: 375 DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQA 427

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 68.6 bits (167), Expect = 7e-13
 Identities = 14/118 (11%), Positives = 36/118 (30%), Gaps = 7/118 (5%)

Query: 153 PDVTAEENENVTLSCRATG-SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN 211
           P +  +  E + + C+A   +    + W  + K +   +    +       +  I     
Sbjct: 235 PQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRI---LF 291

Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTI 269
             + +V  +D+G YTC +         +  + +++     A                 
Sbjct: 292 AFVSSVARNDTGYYTCSSSKHPS---QSALVTIVEKGFINATNSSEDYEIDQYEEFCF 346

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 66.6 bits (162), Expect = 3e-12
 Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 2/89 (2%)

Query: 158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLAN--MNKRQYIIKTINSLSNLTIV 215
            E      SC + G P+P   W        N +  +     N++         +S+ T+ 
Sbjct: 420 AEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLN 479

Query: 216 AVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
                   +  C A N  G     I LN 
Sbjct: 480 MSEAIKGFLVKCCAYNSLGTSCETILLNS 508

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 56.6 bits (136), Expect = 5e-09
 Identities = 15/135 (11%), Positives = 35/135 (25%), Gaps = 22/135 (16%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
           +     T    +++          +       P     EN+   L C +   P P ++W+
Sbjct: 124 SEATNYTILFTVSIRN--------TLLYTLRRPYFRKMENQ-DALVCISESVPEPIVEWV 174

Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
                           ++ +   +   ++       +         C A+N  G   T +
Sbjct: 175 L-------------CDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRL 221

Query: 241 SLNVIKVETAVAQPD 255
               +        P 
Sbjct: 222 FTIDLNQTPQTTLPQ 236

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 72.6 bits (179), Expect = 1e-15
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 7/106 (6%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRY---TFRKLINLVE 91
           CPS C C       TV C  K+  ++P  +   TQVL L DN + +     F +L  L  
Sbjct: 3   CPSQCSC----SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTR 58

Query: 92  LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
           LDL  NQ+  +P+ + D + +L +L L+ N ++ I   AF N+  L
Sbjct: 59  LDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSL 104

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 72.7 bits (179), Expect = 2e-15
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVE 91
           CPS C C     +  V C+     ++P  +    Q L L++N    L+   F  L+NL +
Sbjct: 6   CPSQCSC----DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQ 61

Query: 92  LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
           L  + N++  +P+ + D + +L +L L+ N ++ I   AF N+  L
Sbjct: 62  LYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSL 107

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 73.3 bits (180), Expect = 2e-15
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P I     D+   + E  TL+C+A G P P I+W    + +           +   ++  
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDP----RSHRMLLP 65

Query: 206 INSL--SNLTIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNV 244
             SL    +     +  D G+Y C A+N  GE  + + SL V
Sbjct: 66  SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 71.8 bits (176), Expect = 7e-15
 Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 21/122 (17%)

Query: 126 ITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEK 184
           ++H+A + V  L         + R    DV     E   + C+   G P P I W     
Sbjct: 99  VSHDASLEVAIL-------RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGS 151

Query: 185 IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI-SLN 243
            +        +    +  I+       L I     SD+G Y C   N  GE  + +  L 
Sbjct: 152 PL--------DDKDERITIRG----GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELT 199

Query: 244 VI 245
           V+
Sbjct: 200 VL 201

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 70.9 bits (173), Expect = 2e-15
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 5/111 (4%)

Query: 137 LNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVP--KIKWIFKEKIIANISSGLA 194
              +DF   P I       +A    +V+ +C A  S        W    + + + +    
Sbjct: 3   FVCDDFPX-PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQD-AEMEN 60

Query: 195 NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI-SLNV 244
             + R    + +   + L +  V  +  G Y C   N  G  ++    L +
Sbjct: 61  YAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 70.2 bits (172), Expect = 2e-15
 Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 16/101 (15%)

Query: 146 PNIRPITP-DVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYII 203
             +        +     +VT  C A + SP   + W           +   N        
Sbjct: 10  IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN-------- 61

Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
                   LTI  V  SD+G Y C   N         +L+V
Sbjct: 62  ------GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 75.9 bits (187), Expect = 3e-15
 Identities = 25/134 (18%), Positives = 41/134 (30%), Gaps = 35/134 (26%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN------------------ 76
             S C           +C  +    +PE L      +DLS N                  
Sbjct: 4   GTSECSV----IGYNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQF 58

Query: 77  ----------FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ-- 124
                      +   TFR L +L+ L L YNQ   + +   + +  L  L L+   +   
Sbjct: 59  LKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA 118

Query: 125 KITHEAFINVPKLN 138
            ++   F  +  L 
Sbjct: 119 VLSGNFFKPLTSLE 132

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 68.6 bits (168), Expect = 7e-13
 Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 48  ETVLCKAKNFTTIPEQL---DVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQF 101
           +T          + + +       + L L+ N    +D   F  L +L++L+LS N +  
Sbjct: 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337

Query: 102 VPSHILDSILELRELKLSGNPIQKITHEAFINVPKLN 138
           + S + +++ +L  L LS N I+ +  ++F+ +P L 
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 69  QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
             L+LS NFL   D   F  L  L  LDLSYN I+ +       +  L+EL L  N ++ 
Sbjct: 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385

Query: 126 ITHEAFINVPKLN 138
           +    F  +  L 
Sbjct: 386 VPDGIFDRLTSLQ 398

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 69  QVLDLSDN-----FLDRYTFRKLINLVELDLSYNQIQFV-PSHILDSILELRELKLSGNP 122
           +VL L+        L    F+ L +L  L L  N I+ + P+    ++     L L+ N 
Sbjct: 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165

Query: 123 IQKITHEAFINVPKLNLEDF 142
           ++ I  E  +N    +    
Sbjct: 166 VKSICEEDLLNFQGKHFTLL 185

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.9 bits (135), Expect = 7e-09
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 78  LDRYTFRKLI--NLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVP 135
            D +TF+ L    +   DLS ++I  +   +     +L +L L+ N I KI   AF  + 
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323

Query: 136 KL 137
            L
Sbjct: 324 HL 325

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 6/77 (7%)

Query: 69  QVLDLSDNFL----DRYTFRKLINLVELDLSYNQIQFVPSHILDSI--LELRELKLSGNP 122
           ++L L DN +        F  +     LDL++N+++ +    L +        L+LS   
Sbjct: 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191

Query: 123 IQKITHEAFINVPKLNL 139
           +Q +           N 
Sbjct: 192 LQDMNEYWLGWEKCGNP 208

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 12/104 (11%), Positives = 32/104 (30%), Gaps = 17/104 (16%)

Query: 69  QVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELK-------- 117
            + D+++ +L         K  ++  LDLS N  +   +      +   +++        
Sbjct: 191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250

Query: 118 -----LSGNPIQKITHEAFINVPKLNLEDFACSPN-IRPITPDV 155
                      +   +  F  +    ++    S + I  +   V
Sbjct: 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV 294

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 69.7 bits (171), Expect = 3e-15
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 18/95 (18%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
                    VTL+C     P P+I W+     +    S                    L 
Sbjct: 19  GGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSP------------------VLI 60

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE 248
           +  +   D G Y+C A + +     + ++++  +E
Sbjct: 61  LPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 76.1 bits (187), Expect = 3e-15
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 49  TVLCKAKNFTTIPEQLDVGTQVLDLSDNF---LDRYTFRKLINLVELDLSYNQIQFVPSH 105
            V         +P+ L   T +L++S N+   L       L  L  L +S+N+IQ++   
Sbjct: 4   LVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS 63

Query: 106 ILDSILELRELKLSGNPIQKITHEAFINVPKLNL 139
           +     EL  L LS N + KI+    +N+  L+L
Sbjct: 64  VFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDL 97

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.0 bits (153), Expect = 5e-11
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 69  QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVP-SHILDSILELRELKLSGNPIQKIT 127
           + LDLS N L + +    +NL  LDLS+N    +P      ++ +L+ L LS   ++K +
Sbjct: 72  EYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS 131

Query: 128 HEAFINVPKLNLEDFACSPNIRPITPD 154
                ++    +             P+
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDPE 158

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 62.2 bits (151), Expect = 9e-11
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 69  QVLDLSDNFLDRYTFRKL-INLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
             L++S N L    FR L   +  LDL  N+I+ +P  ++     L+EL ++ N ++ + 
Sbjct: 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKL-EALQELNVASNQLKSVP 460

Query: 128 HEAFINVPKL---NLED--FACSPN 147
              F  +  L    L    + CS  
Sbjct: 461 DGIFDRLTSLQKIWLHTNPWDCSCP 485

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.2 bits (138), Expect = 3e-09
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 60  IPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELREL 116
           I   L    +VLDL  N    + +    KL  L EL+++ NQ++ VP  I D +  L+++
Sbjct: 415 IFRCLPPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKI 473

Query: 117 KLSGNP 122
            L  NP
Sbjct: 474 WLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 11/85 (12%)

Query: 56  NFTTIPEQLDV-----GTQVLDLSDNFLDRY----TFRKLINLVELDLSYNQIQFVPSHI 106
               + +  ++       Q LD+S N +             +L+ L++S N +       
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418

Query: 107 LDSILELRELKLSGNPIQKITHEAF 131
           L     ++ L L  N I+ I  +  
Sbjct: 419 LPP--RIKVLDLHSNKIKSIPKQVV 441

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 69  QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
            + + + +    +      K+   + LD S N +          + EL  L L  N +++
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE 362

Query: 126 ITHEAFINVPKLNLEDFACSPN 147
           ++  A +     +L+    S N
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQN 384

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 3/71 (4%)

Query: 70  VLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI 126
           +  +  +   F   Y +    N+   + + +  + V       I     L  S N +   
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339

Query: 127 THEAFINVPKL 137
             E   ++ +L
Sbjct: 340 VFENCGHLTEL 350

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 75.0 bits (184), Expect = 3e-15
 Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 31/126 (24%)

Query: 121 NPIQKITHEAFINV--PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIK 178
           N +   + E  + V  P           + +   P  T +       +C+ TG+P+  + 
Sbjct: 291 NSVGGESVETVLTVTAP----------LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS 340

Query: 179 WIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT 238
           W  K+      S                     L I +V   D G+Y C  +N       
Sbjct: 341 W-MKDGKAIGHSES------------------VLRIESVKKEDKGMYQCFVRNDRESAEA 381

Query: 239 NISLNV 244
           +  L +
Sbjct: 382 SAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 75.0 bits (184), Expect = 4e-15
 Identities = 20/97 (20%), Positives = 28/97 (28%), Gaps = 7/97 (7%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
              +   +       ++L C A G P P  +W +K         G           +   
Sbjct: 215 PALVQKPLELMVAHTISLLCPAQGFPAPSFRW-YKF------IEGTTRKQAVVLNDRVKQ 267

Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
               L I    + DSG Y C   N  G       L V
Sbjct: 268 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 304

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 63.8 bits (155), Expect = 2e-11
 Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 17/117 (14%)

Query: 152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN 211
           T  +    +    + C+A+G+P+P+I WI  +        G          ++ I+S   
Sbjct: 11  TNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPG----------LRQISSDGK 60

Query: 212 LTIVAVTMSD------SGIYTCRAKNGAGEVFT-NISLNVIKVETAVAQPDPVYLVA 261
           L        D      + +Y C A+N  G + + ++ +  +  +   A  +  +++ 
Sbjct: 61  LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIR 117

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 57.3 bits (138), Expect = 3e-09
 Identities = 21/145 (14%), Positives = 38/145 (26%), Gaps = 18/145 (12%)

Query: 142 FACSPNIRPITPDVTAEENENVTLSCRA---TGSPVPKIKWIFKEKIIANISSGLANMNK 198
              +                +  + C         V  + W   E+      +     + 
Sbjct: 100 AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGA---EYDG 156

Query: 199 RQYIIKTINSLSNLTIVAVTMSDS-GIYTCRAKNGAGE---VFTNISLNVIKVETAVAQP 254
           +  ++ +      L I  V   D    Y CR K+       +       VI    + + P
Sbjct: 157 KYLVLPS----GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAP 212

Query: 255 DPVYLVASLTTVV---TIILTACFV 276
               LV     ++   TI L  C  
Sbjct: 213 RTPALVQKPLELMVAHTISLL-CPA 236

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 72.8 bits (179), Expect = 5e-15
 Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVE 91
           CPS C C       TV C++K   ++P  +    Q+L L DN    L+   F  LINL E
Sbjct: 13  CPSQCSC----SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKE 68

Query: 92  LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI 126
           L L  NQ+  +P  + DS+ +L  L L  N +  +
Sbjct: 69  LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 71.6 bits (176), Expect = 7e-15
 Identities = 31/131 (23%), Positives = 47/131 (35%), Gaps = 30/131 (22%)

Query: 33  AECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN---------------- 76
           + CP+ C C        V C  K    +P+ +      L L  N                
Sbjct: 2   SRCPTECTCLDT----VVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLT 57

Query: 77  ----------FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI 126
                      L   +F  +  L+ L LSYN+++ +P    D +  LR L L GN I  +
Sbjct: 58  LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117

Query: 127 THEAFINVPKL 137
              AF ++  L
Sbjct: 118 PEGAFNDLSAL 128

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 72.8 bits (179), Expect = 7e-15
 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 3/106 (2%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYT---FRKLINLVE 91
           C +   C    GK+ V C+ K+  ++P  +   T+ LDL    L   +   FR L  L  
Sbjct: 4   CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTW 63

Query: 92  LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
           L+L YNQ+Q + + + D + EL  L L+ N +  +    F ++ +L
Sbjct: 64  LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 68  TQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
              L L  N    L    F +L  L EL L+ NQ+Q +P+   D +  L+ L LS N +Q
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168

Query: 125 KITHEAFINVPKL 137
            + H AF  + KL
Sbjct: 169 SVPHGAFDRLGKL 181

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 69  QVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
           + L L+ N L       F KL NL  L LS NQ+Q VP    D + +L+ + L GN 
Sbjct: 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 74.3 bits (183), Expect = 7e-15
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 6/92 (6%)

Query: 56  NFTTIPEQLDVGT---QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
               +P  +        VL L  N    L R  F     L  L +S N ++ +      +
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163

Query: 110 ILELRELKLSGNPIQKITHEAFINVPKLNLED 141
              L+ L+LS N +  +      ++   N+  
Sbjct: 164 TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 195

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 56  NFTTIPEQLDVGT---QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
               +P  L       ++L+L+D  +   D Y F     + +L + +N I+++P H+  +
Sbjct: 56  TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115

Query: 110 ILELRELKLSGNPIQKITHEAFINVPKL 137
           +  L  L L  N +  +    F N PKL
Sbjct: 116 VPLLTVLVLERNDLSSLPRGIFHNTPKL 143

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 68.1 bits (167), Expect = 7e-13
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELR 114
           +   +   ++V   +L L  N L           LVE+DLSYN+++ +  H    +  L 
Sbjct: 216 SINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275

Query: 115 ELKLSGNPIQKITHEAFINVPKL 137
            L +S N +  + +     +P L
Sbjct: 276 RLYISNNRLVAL-NLYGQPIPTL 297

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.1 bits (159), Expect = 8e-12
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 69  QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
           Q L LS N L       + +L   ++SYN +  +   I      + EL  S N I  +  
Sbjct: 168 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPI-----AVEELDASHNSINVVRG 222

Query: 129 EAFINVPKLNL 139
              + +  L L
Sbjct: 223 PVNVELTILKL 233

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 6/91 (6%)

Query: 56  NFTTIPEQLDVGT---QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDSI 110
               I     V     + L +S+N L       + +  L  LDLS+N +  V  +     
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP-QF 317

Query: 111 LELRELKLSGNPIQKITHEAFINVPKLNLED 141
             L  L L  N I  +       +  L L  
Sbjct: 318 DRLENLYLDHNSIVTLKLSTHHTLKNLTLSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRE 115
             +T+   + V  + LD S N ++       + L  L L +N +       L +   L E
Sbjct: 197 LLSTLAIPIAV--EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAW--LLNYPGLVE 252

Query: 116 LKLSGNPIQKITHEAFINVPKL 137
           + LS N ++KI +  F+ + +L
Sbjct: 253 VDLSYNELEKIMYHPFVKMQRL 274

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 57  FTTIPEQLDVGTQVLDLSDNFLDRYTFR-----KLINLVELDLSYNQIQFVPSHILDSIL 111
           +  I   L       D+  +   +  +       L N   +    + ++ +P+ +LDS  
Sbjct: 10  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 69

Query: 112 ELRELKLSGNPIQKITHEAFINVPKL 137
           ++  L L+   I++I   AF     +
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAHTI 95

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 74.0 bits (181), Expect = 7e-15
 Identities = 25/134 (18%), Positives = 40/134 (29%), Gaps = 18/134 (13%)

Query: 152 TPDVTAEENENVTLSC-------RATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
                  E E V L C        A+ SP   + W   +              +   +  
Sbjct: 25  YKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTV------PGEEETRMWA 78

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQ--PDPVYLVAS 262
              +L    ++     DSG Y C  +N +     +I L V +   A       P  L  S
Sbjct: 79  QDGAL---WLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLS 135

Query: 263 LTTVVTIILTACFV 276
            + V+     + F 
Sbjct: 136 TSGVLVCPDLSEFT 149

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 60.5 bits (146), Expect = 2e-10
 Identities = 21/153 (13%), Positives = 48/153 (31%), Gaps = 18/153 (11%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVT---LSCRATGSPVPKI 177
           N          + V     E+             +T   +  +    LS         KI
Sbjct: 102 NASYCDKMSIELRV----FENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKI 157

Query: 178 KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
           +W     ++          +K      ++   ++L +  V + D+G Y C          
Sbjct: 158 QWYKDSLLL----------DKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQ 207

Query: 238 TNISLNV-IKVETAVAQPDPVYLVASLTTVVTI 269
            NI+ ++ ++++    +  PV +    T   ++
Sbjct: 208 YNITRSIELRIKKKKEETIPVIISPLKTISASL 240

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 59.7 bits (144), Expect = 3e-10
 Identities = 16/105 (15%), Positives = 33/105 (31%), Gaps = 8/105 (7%)

Query: 146 PNIRPITPDVTAEENENVTLSCRA---TGSPVPKIKWIFKEKIIANISSGLANMNKRQYI 202
           P I      ++A     +T+ C+    TG+P+  + W          +     + +    
Sbjct: 227 PVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQ 286

Query: 203 IKTINS----LSNLTIVAVTMSDSGI-YTCRAKNGAGEVFTNISL 242
             + N+       L    VT  D  + + C   N         ++
Sbjct: 287 EYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 74.6 bits (183), Expect = 1e-14
 Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 24/123 (19%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
            +              N++LSC A  +P  +  W+    I  +                 
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQE-------------- 427

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTT 265
                 L I  +T  +SG+YTC+A N A          +    T  A+     + ++ + 
Sbjct: 428 ------LFISNITEKNSGLYTCQANNSASGHSRTTVKTI----TVSAELPKPSISSNNSK 477

Query: 266 VVT 268
            V 
Sbjct: 478 PVE 480

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 72.3 bits (177), Expect = 6e-14
 Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 20/100 (20%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
                  PD +     N+ LSC +  +P P+  W        +                 
Sbjct: 560 DTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQV-------------- 605

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
                 L I  +T +++G Y C   N A     +I  ++ 
Sbjct: 606 ------LFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 68.4 bits (167), Expect = 9e-13
 Identities = 17/137 (12%), Positives = 36/137 (26%), Gaps = 17/137 (12%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
           N     +      +                       E+ + V  +C           W 
Sbjct: 447 NSASGHSRTTVKTI----TVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWW 501

Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN- 239
              + +                ++  N    LT+  VT +D+  Y C  +N      ++ 
Sbjct: 502 VNGQSLPVSPR-----------LQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDP 550

Query: 240 ISLNVIKVETAVAQPDP 256
           ++L+V+          P
Sbjct: 551 VTLDVLYGPDTPIISPP 567

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 67.7 bits (165), Expect = 2e-12
 Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 33/137 (24%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
                   + +    EN+ LSC A  +P  +  W                          
Sbjct: 204 DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTF-------------------- 243

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAG--EVFTNISLNVIKVETAVAQPDPVYLVASL 263
             S   L I  +T+++SG YTC+A N        T  ++ V       A+P   ++ ++ 
Sbjct: 244 QQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVY------AEPPKPFITSNN 297

Query: 264 TTVV----TIILTACFV 276
           +  V     + LT C  
Sbjct: 298 SNPVEDEDAVALT-CEP 313

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 64.2 bits (156), Expect = 2e-11
 Identities = 16/101 (15%), Positives = 29/101 (28%), Gaps = 13/101 (12%)

Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
                        E+ + V  +C           W    + +                ++
Sbjct: 111 PKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPR-----------LQ 158

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF-TNISLNV 244
             N    LT+  VT +D+  Y C  +N        ++ LNV
Sbjct: 159 LSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNV 199

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 63.8 bits (155), Expect = 3e-11
 Identities = 21/140 (15%), Positives = 36/140 (25%), Gaps = 17/140 (12%)

Query: 147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIAN--ISSGLANMNKRQYIIK 204
            I     +V   E + V L        +    W   E++  N  I   +    +      
Sbjct: 3   TIESTPFNVA--EGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60

Query: 205 -----TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYL 259
                 I   ++L I  +  +D+G YT                   +       P P   
Sbjct: 61  YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLV----NEEATGQFRVYPELPKPSIS 116

Query: 260 VASLTTVV---TIILTACFV 276
             +   V     +  T C  
Sbjct: 117 SNNSKPVEDKDAVAFT-CEP 135

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 63.4 bits (154), Expect = 4e-11
 Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 18/143 (12%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
           N    +          + +      P I         E+ + V L+C         + W+
Sbjct: 269 NSDTGLNRTTVTT---ITVYAEPPKPFITS-NNSNPVEDEDAVALTCEPEIQNTTYLWWV 324

Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN- 239
             + +  +    L+N N+             LT+++VT +D G Y C  +N      ++ 
Sbjct: 325 NNQSLPVSPRLQLSNDNR------------TLTLLSVTRNDVGPYECGIQNELSVDHSDP 372

Query: 240 ISLNVIKV-ETAVAQPDPVYLVA 261
           + LNV+   +     P   Y   
Sbjct: 373 VILNVLYGPDDPTISPSYTYYRP 395

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 74.2 bits (182), Expect = 1e-14
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 6/92 (6%)

Query: 56  NFTTIPEQLDVGT---QVLDLSDNF---LDRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
               +P  +        VL L  N    L R  F     L  L +S N ++ +      +
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169

Query: 110 ILELRELKLSGNPIQKITHEAFINVPKLNLED 141
              L+ L+LS N +  +      ++   N+  
Sbjct: 170 TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 201

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.0 bits (179), Expect = 3e-14
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 56  NFTTIPEQLDVGT---QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
               +P  L       ++L+L+D  +   D Y F     + +L + +N I+++P H+  +
Sbjct: 62  TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121

Query: 110 ILELRELKLSGNPIQKITHEAFINVPKL 137
           +  L  L L  N +  +    F N PKL
Sbjct: 122 VPLLTVLVLERNDLSSLPRGIFHNTPKL 149

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.4 bits (167), Expect = 1e-12
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFL-DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELR 114
           +   +   ++V   +L L  N L D         LVE+DLSYN+++ +  H    +  L 
Sbjct: 222 SINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281

Query: 115 ELKLSGNPIQKITHEAFINVPKL 137
            L +S N +  + +     +P L
Sbjct: 282 RLYISNNRLVAL-NLYGQPIPTL 303

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.9 bits (158), Expect = 1e-11
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 56  NFTTIPEQLDVGT---QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILE 112
           N   I +     T   Q L LS N L       + +L   ++SYN +  +   I      
Sbjct: 158 NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPI-----A 212

Query: 113 LRELKLSGNPIQKITHEAFINVPKLNLED 141
           + EL  S N I  +     + +  L L+ 
Sbjct: 213 VEELDASHNSINVVRGPVNVELTILKLQH 241

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.6 bits (157), Expect = 1e-11
 Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 6/91 (6%)

Query: 56  NFTTIPEQLDVGT---QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDSI 110
               I     V     + L +S+N L       + +  L  LDLS+N +  V  +     
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP-QF 323

Query: 111 LELRELKLSGNPIQKITHEAFINVPKLNLED 141
             L  L L  N I  +       +  L L  
Sbjct: 324 DRLENLYLDHNSIVTLKLSTHHTLKNLTLSH 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.1 bits (148), Expect = 2e-10
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRE 115
             +T+   + V  + LD S N ++       + L  L L +N +       L +   L E
Sbjct: 203 LLSTLAIPIAV--EELDASHNSINVVRGPVNVELTILKLQHNNLTDTAW--LLNYPGLVE 258

Query: 116 LKLSGNPIQKITHEAFINVPKL 137
           + LS N ++KI +  F+ + +L
Sbjct: 259 VDLSYNELEKIMYHPFVKMQRL 280

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 60.7 bits (147), Expect = 3e-10
 Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 50  VLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFR-----KLINLVELDLSYNQIQFVPS 104
           V  +   +  I   L       D+  +   +  +       L N   +    + ++ +P+
Sbjct: 9   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68

Query: 105 HILDSILELRELKLSGNPIQKITHEAFINVPKL 137
            +LDS  ++  L L+   I++I   AF     +
Sbjct: 69  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTI 101

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 73.3 bits (179), Expect = 1e-14
 Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 22/125 (17%)

Query: 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL 209
               D    + +++TL+  +     P ++                    R    K I   
Sbjct: 101 TANSDTHLLQGQSLTLTLESPPGSSPSVQC-------------------RSPRGKNIQGG 141

Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTI 269
             L++  + + DSG +TC       +V   I + V+  + A      VY         + 
Sbjct: 142 KTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA---SSIVYKKEGEQVEFSF 198

Query: 270 ILTAC 274
            L   
Sbjct: 199 PLAFT 203

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 67.1 bits (163), Expect = 2e-12
 Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 8/113 (7%)

Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKII------ANISSGLANMNKRQYIIKTINS 208
           V  ++ + V L+C A+     +  W    +I       + ++ G + +N R    +++  
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63

Query: 209 LSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYL 259
             N  L I  + + DS  Y C  ++   EV   +       +T + Q   + L
Sbjct: 64  QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTL 116

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 49.0 bits (116), Expect = 1e-06
 Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 17/139 (12%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVT-----------LSCRA 169
              +K+  +  I V       F  + +I         E +  +            L  +A
Sbjct: 163 QNQKKVEFKIDIVVL-----AFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQA 217

Query: 170 TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA 229
             +   K    F  K        +    K Q   K    L+ L       + SG  T   
Sbjct: 218 ERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLT-LPQALPQYAGSGNLTLAL 276

Query: 230 KNGAGEVFTNISLNVIKVE 248
           +   G++   ++L V++  
Sbjct: 277 EAKTGKLHQEVNLVVMRAT 295

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 46.3 bits (109), Expect = 8e-06
 Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 19/97 (19%)

Query: 149 RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS 208
           + +   V         L+C   G   PK+    K +                   K    
Sbjct: 285 QEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLEN------------------KEAKV 326

Query: 209 LSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
                 V V   ++G++ C   +  G+V    ++ V+
Sbjct: 327 SKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKVL 362

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 73.3 bits (180), Expect = 2e-14
 Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 9/107 (8%)

Query: 138 NLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMN 197
             +     P            E ++    CR   S  P + W   ++ +           
Sbjct: 475 FWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDREL---------KQ 525

Query: 198 KRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
             +Y+ +   +   LTI  V   D G YT RAKN  G     + LNV
Sbjct: 526 SVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 71.6 bits (175), Expect = 3e-14
 Identities = 18/138 (13%), Positives = 43/138 (31%), Gaps = 13/138 (9%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P  + +  +V  +   ++   C    +P  +  W        +        + R   +++
Sbjct: 4   PFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTED--------SPR-LEVES 53

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV---IKVETAVAQPDPVYLVAS 262
             + + +T   + M D GIY+C   +  G   + +         +  +     P   V S
Sbjct: 54  KGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKS 113

Query: 263 LTTVVTIILTACFVVLCI 280
              V  +        +  
Sbjct: 114 ELAVEILEKGQVRFWMQA 131

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 68.5 bits (167), Expect = 4e-13
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 12/93 (12%)

Query: 153 PDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN 211
                    NV L C+         I W   E+ I+            ++  K  + +  
Sbjct: 229 LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV---------DEKHDFK--DGICT 277

Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           L I   +  D+GIY    K+  G+  + + L  
Sbjct: 278 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 66.9 bits (163), Expect = 1e-12
 Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 7/131 (5%)

Query: 126 ITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKI 185
           I  E    +  L+ E    +  ++        E+ +          S   K+ +IF EK 
Sbjct: 89  IDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKE 148

Query: 186 IANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
           I           K +  I     +  + +  +   D G YT + ++G     + + L   
Sbjct: 149 IFEGP-------KYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGD 201

Query: 246 KVETAVAQPDP 256
             +    + + 
Sbjct: 202 VFKKLQKEAEF 212

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 66.7 bits (163), Expect = 3e-14
 Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 14/106 (13%)

Query: 139 LEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNK 198
           L + A    +      +     + + L CR        I W+     +          + 
Sbjct: 3   LPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVE--------SN 53

Query: 199 RQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           R  I         + +     +DSG+Y C   + +G   T  S+NV
Sbjct: 54  RTRITG-----EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 69.5 bits (170), Expect = 3e-14
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 2/93 (2%)

Query: 154 DVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
           ++T       TL C+       P++ W+   +I+    S    +   +        +S L
Sbjct: 11  NITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQL 70

Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNV 244
            I ++ +SD+G Y C    G     +    + +
Sbjct: 71  RITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGL 103

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 60.3 bits (146), Expect = 5e-11
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 18/94 (19%)

Query: 154 DVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
           D T   N    LSC+A G P P  + W  ++                  +          
Sbjct: 115 DRTVAANTPFNLSCQAQGPPEPVDLLW-LQD---------------AVPLATAPGHGPQR 158

Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNVI 245
           ++    ++ +  ++C A N  G   +   ++ V+
Sbjct: 159 SLHVPGLNKTSSFSCEAHNAKGVTTSRTATITVL 192

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 69.6 bits (170), Expect = 4e-14
 Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 8/103 (7%)

Query: 154 DVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
            V   E   V    +A   S   K+ +IF EK I           K +  I     +  +
Sbjct: 11  AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFE-------GPKYKMHIDRNTGIIEM 63

Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPD 255
            +  +   D G YT + ++G     + + L     +    + +
Sbjct: 64  FMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAE 106

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 66.9 bits (163), Expect = 3e-13
 Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 12/93 (12%)

Query: 153 PDVTAEENENVTLSCRATGS-PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN 211
                    NV L C+         I W   E+ I                    + +  
Sbjct: 124 LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI-----------SVDEKHDFKDGICT 172

Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           L I   +  D+GIY    K+  G+  + + L  
Sbjct: 173 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 68.4 bits (168), Expect = 5e-14
 Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 31/130 (23%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL--------DRYT---- 82
           CPS C C        + C +K  T++P  +      L+L  N L        D+ T    
Sbjct: 1   CPSRCSC----SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTK 56

Query: 83  ---------------FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
                          F KL  L  L L  N++Q +P+ + D + +L+EL L  N ++ + 
Sbjct: 57  LSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116

Query: 128 HEAFINVPKL 137
              F  +  L
Sbjct: 117 DGIFDRLTSL 126

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 68.9 bits (168), Expect = 9e-14
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 12/101 (11%)

Query: 146 PNIRPITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
           P+      D + E   +  L C    GS   + +W  K       S            + 
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEW-QKL------SDSQTMPTPWLAEMT 174

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
           +      +++   +   SG Y+C  +N  G     + L+V+
Sbjct: 175 S----PVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV 211

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 61.2 bits (148), Expect = 4e-11
 Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 19/110 (17%)

Query: 155 VTAEENENVTLSCRATGSPVPK----IKWIFKEKIIAN-------------ISSGLANMN 197
           +   + E   L C+ T SP  +    I+W+                       +   ++ 
Sbjct: 10  IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLK 69

Query: 198 KRQYIIKTINSLSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
            R +         +  + +  + +SD G Y C+ K   G       L V+
Sbjct: 70  GRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL 119

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.1 bits (172), Expect = 9e-14
 Identities = 31/128 (24%), Positives = 47/128 (36%), Gaps = 30/128 (23%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL--------DRYT---- 82
           C  +           V C  +N T +P  L   T +L LS+N L          YT    
Sbjct: 4   CEVSKVAS----HLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQ 59

Query: 83  -------------FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHE 129
                           L  L  LDLS+NQ+Q +P  +  ++  L  L +S N +  +   
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLG 118

Query: 130 AFINVPKL 137
           A   + +L
Sbjct: 119 ALRGLGEL 126

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.4 bits (157), Expect = 7e-12
 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 48  ETVLCKAKNFTTIPEQLD--VGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFV 102
            T+        ++P          VLD+S N    L     R L  L EL L  N+++ +
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139

Query: 103 PSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
           P  +L    +L +L L+ N + ++       +  L
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 7/89 (7%)

Query: 69  QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
           Q L L  N    L          L +L L+ N +  +P+ +L+ +  L  L L  N +  
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 126 ITHEAF--INVPKLNLED--FACSPNIRP 150
           I    F    +P   L    + C+  I  
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPWLCNCEILY 215

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 28/125 (22%), Positives = 42/125 (33%), Gaps = 29/125 (23%)

Query: 40  ECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNF---------------------- 77
           +C      E   C     T +P+ L     VL+L+ N                       
Sbjct: 1   KCTVSH--EVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 78  -----LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFI 132
                L+    +KL  L  L+L +N++  +          L EL L  N IQKI +  F+
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 133 NVPKL 137
               L
Sbjct: 119 KQKNL 123

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.3 bits (170), Expect = 5e-13
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 69  QVLDLSDN----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
           +VLDL  N     L    +R L N+ E+ LSYN+   +  +    +  L+ L L    ++
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 125 KITH--EAFINVPKL 137
            +      F  +  L
Sbjct: 468 NVDSSPSPFQPLRNL 482

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.5 bits (168), Expect = 9e-13
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 9/88 (10%)

Query: 69  QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
            +L+L  N    +    F+ L  L  +DL  N +  +P+ + ++ + L+ L L  N I  
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598

Query: 126 ITHEAFINVPK----LNLED--FACSPN 147
           +  + F    +    L++    F C+  
Sbjct: 599 VEKKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 6/91 (6%)

Query: 56  NFTTIPEQLDVGT---QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
             + + ++          L L  N +       F K  NL+ LDLS+N +          
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 110 ILELRELKLSGNPIQKITHEAFINVPKLNLE 140
           +  L+EL LS N IQ +  E        +L+
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLK 174

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 14/96 (14%)

Query: 56  NFTTIPEQLDVGT---QVLDLSDNFLDR-----------YTFRKLINLVELDLSYNQIQF 101
           N   I + +  G    ++LDL  N L R           Y  + L +L  L+L  N    
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550

Query: 102 VPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
           +P  +   + EL+ + L  N +  +    F N   L
Sbjct: 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 69  QVLDLSDNFLDRYT-----FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
           Q L L    L         F+ L NL  LDLS N I  +   +L+ + +L  L L  N +
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516

Query: 124 QKITHEAFINVPKLNLED 141
            ++   A    P   L+ 
Sbjct: 517 ARLWKHANPGGPIYFLKG 534

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 13/100 (13%)

Query: 69  QVLDLSDNFL---DRYTFR--KLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
           + L LS++ L      TF   K  NL  LDLSYN +  V +     + +L    L  N I
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284

Query: 124 QKITHEAFINVPKL-------NLEDFACSPN-IRPITPDV 155
           Q +   +   +  +       +    + S   +  I    
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 11/93 (11%)

Query: 56  NFTTIPEQLDVGT---QVLDLSDNF-----LDRYTFRKLIN--LVELDLSYNQIQFVPSH 105
           +   I   +  G    + L LS++F     L   TF  L +  L  L+L+ N+I  + S 
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

Query: 106 ILDSILELRELKLSGNPI-QKITHEAFINVPKL 137
               +  L  L L  N I Q++T + +  +  +
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.6 bits (145), Expect = 7e-10
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 69  QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHIL---DSILELRELKLSGNP 122
           + L+LS N +       F  +  L  L L+  Q+    +  L    +   +R L LS + 
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 123 IQKITHEAFINVPKLNLE 140
           +   ++  F+ +   NL 
Sbjct: 234 LSTTSNTTFLGLKWTNLT 251

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 14/86 (16%)

Query: 69  QVLDLSDNF------------LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELREL 116
           + L+L  +F            +D ++F+ L  L  L++  N I  + S++   ++ L+ L
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358

Query: 117 KLSGNPIQ--KITHEAFINVPKLNLE 140
            LS +      +T+E F+++    L 
Sbjct: 359 SLSNSFTSLRTLTNETFVSLAHSPLH 384

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 56  NFTTIPEQLDVGT---QVLDLSDNFL-----DRYTFRKLINLVELDLSYNQIQFVPSHIL 107
             ++      V     Q L LS+N +     +        +L +L+LS NQI+       
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 108 DSILELRELKLSGNPIQK-ITHEAFINVPKLNLE 140
            +I  L  L L+   +   +T +  + +   ++ 
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR 225

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.4 bits (175), Expect = 1e-13
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 69  QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
           + LDLS      L+   F  L +L  L+L+YN+I  +       +  L+ L LS N + +
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328

Query: 126 ITHEAFINVPKL 137
           +    F  +PK+
Sbjct: 329 LYSSNFYGLPKV 340

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 70.6 bits (173), Expect = 2e-13
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 69  QVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
           +VL+L+ N    +    F  L NL  L+LSYN +  + S     + ++  + L  N I  
Sbjct: 293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI 352

Query: 126 ITHEAFINVPKLNLEDF 142
           I  + F  + KL   D 
Sbjct: 353 IQDQTFKFLEKLQTLDL 369

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.1 bits (164), Expect = 3e-12
 Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 6/85 (7%)

Query: 69  QVLDLSDNFL-----DRYTFRKLINLVELDLSYNQIQFVPSH-ILDSILELRELKLSGNP 122
             L L    L         FR L  L  LDLS NQI+ +  H     +  L+ +  S N 
Sbjct: 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159

Query: 123 IQKITHEAFINVPKLNLEDFACSPN 147
           I  +       +    L  F+ + N
Sbjct: 160 IFLVCEHELEPLQGKTLSFFSLAAN 184

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 35/131 (26%)

Query: 38  TCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL------------------- 78
           +C             +  N T +P+ L+  T+ L LS N++                   
Sbjct: 1   SCSFD----GRIAFYRFCNLTQVPQVLN-TTERLLLSFNYIRTVTASSFPFLEQLQLLEL 55

Query: 79  ---------DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK--IT 127
                    D+  FR L NL  LDL  ++I F+       +  L EL+L    +    + 
Sbjct: 56  GSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK 115

Query: 128 HEAFINVPKLN 138
              F N+  L 
Sbjct: 116 DGYFRNLKALT 126

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 37/255 (14%), Positives = 71/255 (27%), Gaps = 52/255 (20%)

Query: 69  QVLDLSDNFLDR--------YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG 120
           + L L +N L            F  L +L  L L++N +  +P  +   +  LR L L+ 
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPN-IRPITPDV----TAEENENVTLSCRATGSPVP 175
           N +  ++H         NLE    S N +    PDV    +  +  +    C        
Sbjct: 514 NRLTVLSHNDL----PANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFIC--ECELST 567

Query: 176 KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE 235
            I W+       N ++               +S S +++ +++                 
Sbjct: 568 FINWL-------NHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEV-------- 612

Query: 236 VFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLCIILLKAKRKRYADVNR 295
                                +     +   VT+ L    ++            Y    R
Sbjct: 613 ------------------LKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICYKTAQR 654

Query: 296 RYLEDKCESNHQQSK 310
              +D  +       
Sbjct: 655 LVFKDHPQGTEPDMY 669

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 56  NFTTIPEQLDVGT---QVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVPSHILDS 109
               I ++   G    QVL+LS N L       F  L  +  +DL  N I  +       
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360

Query: 110 ILELRELKLSGNPIQKITHEAFINVPKLNLED 141
           + +L+ L L  N +  I      ++P + L  
Sbjct: 361 LEKLQTLDLRDNALTTIHF--IPSIPDIFLSG 390

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 62.9 bits (153), Expect = 7e-11
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 69  QVLDLSDNFL---DRYTFRKL--INLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
                  + +   D+ TF  L   ++  LDLS+  +  + S + +++ +L+ L L+ N I
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302

Query: 124 QKITHEAFINVPKL 137
            KI  EAF  +  L
Sbjct: 303 NKIADEAFYGLDNL 316

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDR----YTFRKLINLVELDLSYNQIQFVPSHILDSIL 111
              T+P ++++   ++ LS+N L+     Y   ++ +L  L L+ N+          S  
Sbjct: 392 KLVTLP-KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 112 E-LRELKLSGNPIQ-----KITHEAFINVPKL 137
             L +L L  N +Q     ++  + F  +  L
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 7e-06
 Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 12/93 (12%)

Query: 69  QVLDLSDNFLDRY---TFRKL--INLVELDLSYNQIQFVPSHILDSILE------LRELK 117
           + +D S N +          L    L    L+ N +    S      +       L  L 
Sbjct: 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210

Query: 118 LSGNPIQKITHEAFIN-VPKLNLEDFACSPNIR 149
           +SGN         F N + K        + +I 
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 7e-05
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 10/98 (10%)

Query: 69  QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
           Q LDL DN L   T   + ++ ++ LS N++      +    L    + LS N ++ +  
Sbjct: 365 QTLDLRDNALT--TIHFIPSIPDIFLSGNKL----VTLPKINLTANLIHLSENRLENLDI 418

Query: 129 EAFI-NVPKLNLEDFACSPN-IRPITPDVTAEENENVT 164
             F+  VP  +L+    + N     + D T  EN ++ 
Sbjct: 419 LYFLLRVP--HLQILILNQNRFSSCSGDQTPSENPSLE 454

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 10/88 (11%)

Query: 69  QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
           ++LD+S N            +       N I    +  L     +       + I+    
Sbjct: 207 EILDVSGNG---------WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257

Query: 129 EAFINVPKLNLEDFACSPN-IRPITPDV 155
             F  + + ++     S   +  +   V
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRV 285

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 10/82 (12%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           D      E+V L C  + +  P + W+   K I          +++ Y +    +++ L 
Sbjct: 17  DQWVAPGEDVELRCELSRAGTP-VHWLKDRKAI--------RKSQK-YDVVCEGTMAMLV 66

Query: 214 IVAVTMSDSGIYTCRAKNGAGE 235
           I   ++ D+G YTC  +     
Sbjct: 67  IRGASLKDAGEYTCEVEASKST 88

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 14/103 (13%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
            + + P    ++   V         P  ++KW    + I             +YI +   
Sbjct: 11  AKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRP---------STKYIFEHKG 60

Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
               L I    M+D   Y       AG+   +  L V    ++
Sbjct: 61  CQRILFINNCQMTDDSEYYVT----AGDEKCSTELFVRSGPSS 99

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 68.9 bits (168), Expect = 2e-13
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 22/97 (22%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
            R    + T  EN   T  C+A G+P+P++K +                           
Sbjct: 188 ERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP--------------------- 226

Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
            L     V VT    G Y CRA++  GEV   +++NV
Sbjct: 227 -LPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 262

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 15/117 (12%), Positives = 28/117 (23%), Gaps = 13/117 (11%)

Query: 150 PITPDVTA----EENENVTLSCRATGS-PVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
              P + +    E +   T+ C   G  PV + +           + G   +N       
Sbjct: 4   ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHL--------ALGDQRLNPTVTYGN 55

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVA 261
              S      V      +   TC    G     T  ++ +              +  
Sbjct: 56  DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSE 112

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 11/89 (12%), Positives = 21/89 (23%), Gaps = 21/89 (23%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P    I       E   VT+ C A       +  +                       + 
Sbjct: 99  PAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVP---------------------AQP 137

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAG 234
           +   + L + A    +   ++C A     
Sbjct: 138 LGPRAQLLLKATPEDNGRSFSCSATLEVA 166

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 65.1 bits (159), Expect = 2e-13
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 13/101 (12%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
           ++ I  D+T +  E     C  +   V   KW      +            ++  I  + 
Sbjct: 12  LQDIA-DLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEV---------RPSKRITISHVG 60

Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE 248
               L I  V   D G YT      A     +  LN ++++
Sbjct: 61  RFHKLVIDDVRPEDEGDYTFVPDGYALS--LSAKLNFLEIK 99

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 64.4 bits (157), Expect = 3e-13
 Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 14/99 (14%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
              +P   +V AE   + TLSC        ++ W    K +++           +  ++ 
Sbjct: 12  AKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSS---------SSKVRVEA 61

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           +     L +     +++G Y+C     AG    +  L V
Sbjct: 62  VGCTRRLVVQQAGQAEAGEYSCE----AGGQQLSFRLQV 96

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 64.3 bits (157), Expect = 3e-13
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 14/97 (14%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           D+   E    TL C  +    P +KW +   ++             +Y ++   ++  L 
Sbjct: 17  DLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVL---------RPGDKYSLRQEGAMLELV 66

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
           +  +   DSG Y+C      G+  T+ +L V  + + 
Sbjct: 67  VRNLRPQDSGRYSCS----FGDQTTSATLTVTALPSG 99

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 56  NFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILE 112
           N + +      G + + L++N    L          +  LDL  N+I  V    L +  +
Sbjct: 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 113 -LRELKLSGNPIQKITHEAFI-NVPKLNLED 141
            L  L L  N I  +  +     +  L+L  
Sbjct: 170 TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS 200

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 69  QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
           ++  ++D+ L        +   N+ ELDLS N +  + +  L    +L  L LS N + +
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72

Query: 126 ITHEAFINVPKL 137
                  ++  L
Sbjct: 73  T--LDLESLSTL 82

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 10/65 (15%), Positives = 23/65 (35%)

Query: 69  QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
           + L  ++N + R +  +      + L+ N+I  +          ++ L L  N I  +  
Sbjct: 102 ETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 129 EAFIN 133
                
Sbjct: 162 AELAA 166

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.5 bits (150), Expect = 7e-11
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 69  QVLDLSDNFL-DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
           ++L+LS N L +      L  L  LDL+ N +Q +          +  L  + N I +++
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNISRVS 115

Query: 128 HEAFINVPKLNLED 141
                    + L +
Sbjct: 116 CSRGQGKKNIYLAN 129

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 11/55 (20%), Positives = 24/55 (43%)

Query: 83  FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
            +         ++ + ++   + +  S   ++EL LSGNP+ +I+        KL
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 15/91 (16%)

Query: 56  NFTTIPEQLDVGT----QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHI-- 106
              T+       +    + L+L  NF+             L  LDLS N++ F+      
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQS 212

Query: 107 LDSILELRELKLSGNPIQKITHEAFINVPKL 137
                 +  + L  N +  I  +A      L
Sbjct: 213 AAG---VTWISLRNNKLVLI-EKALRFSQNL 239

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 14/88 (15%), Positives = 24/88 (27%), Gaps = 5/88 (5%)

Query: 56  NFTTIPEQLDVGT--QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDSIL 111
               +  +         + L +N L       R   NL   DL  N           S  
Sbjct: 202 KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 112 ELRELKLSGNPIQKITHEAFINVPKLNL 139
             R   ++   ++K+T +         L
Sbjct: 262 -QRVQTVAKQTVKKLTGQNEEECTVPTL 288

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 64.6 bits (157), Expect = 4e-13
 Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 1/115 (0%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
            ++   T  +T EE + +TL C  +      ++W+        ++      N +  ++  
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLV 260
             +  ++T+  VT+ D G+Y C            + + V+          P +  
Sbjct: 62  SANQLSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIVLATMKGEFCRYPSHWR 115

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 68.6 bits (167), Expect = 4e-13
 Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 12/120 (10%)

Query: 139 LEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMN 197
           LE   C    R     + +  NE     C    +     I W +K     + S    +  
Sbjct: 1   LEADKCKE--REEKIILVSSANEIDVRPCPLNPNEHKGTITW-YK-----DDSKTPVSTE 52

Query: 198 KRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPV 257
           +   I +       L  V   + DSG Y C  +N +  +   IS   ++ E  +      
Sbjct: 53  QASRIHQ---HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQA 109

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 67.8 bits (165), Expect = 7e-13
 Identities = 18/101 (17%), Positives = 29/101 (28%), Gaps = 4/101 (3%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKR---QYIIK 204
           + P    +  +    + L C  TG       W +   +I      L             +
Sbjct: 212 VSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKR 271

Query: 205 TINSLSNLTIVAVTMSD-SGIYTCRAKNGAGEVFTNISLNV 244
               ++ L I  +        +TC AKN  G     I L  
Sbjct: 272 RSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 62.0 bits (150), Expect = 5e-11
 Identities = 19/157 (12%), Positives = 43/157 (27%), Gaps = 22/157 (14%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSC------RATGSPV 174
           N    +  +         +E+                    +  L C      +   + +
Sbjct: 83  NSSYCLRIKISAKF----VENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNEL 138

Query: 175 PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG 234
           PK++W    K +         ++   +          L ++ V     G YTC A     
Sbjct: 139 PKLQWYKDCKPL--------LLDNIHFSGVK----DRLIVMNVAEKHRGNYTCHASYTYL 186

Query: 235 EVFTNISLNVIKVETAVAQPDPVYLVASLTTVVTIIL 271
                I+  +  +     +P    +V+     + + L
Sbjct: 187 GKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDL 223

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 63.9 bits (156), Expect = 4e-13
 Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 8/82 (9%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           D TA   E V L C  +      +KW FK          +    K +Y I+       L 
Sbjct: 16  DTTAYCGERVELECEVSE-DDANVKW-FKNGEE------IIPGPKSRYRIRVEGKKHILI 67

Query: 214 IVAVTMSDSGIYTCRAKNGAGE 235
           I   T +D+  Y+     G   
Sbjct: 68  IEGATKADAAEYSVMTTGGQSS 89

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 63.9 bits (156), Expect = 5e-13
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 13/97 (13%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
            + + P     +   + L+         ++KW+   + I         M+  +YI ++I 
Sbjct: 19  QKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEI--------QMSGSKYIFESIG 69

Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           +   LTI   +++D   Y C      G    +  L V
Sbjct: 70  AKRTLTISQCSLADDAAYQCV----VGGEKCSTELFV 102

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.7 bits (168), Expect = 7e-13
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 12/94 (12%)

Query: 56  NFTTIPEQLDVGT---QVLDLSDNFL----DRYTFRKLINLVELDLSYNQIQFVPSHILD 108
               IPE     T   + L  S N L    + +  + +  +  +D SYN+I     +I  
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 109 SI-----LELRELKLSGNPIQKITHEAFINVPKL 137
           S+     +    + LS N IQK   E F     +
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 13/103 (12%), Positives = 29/103 (28%), Gaps = 14/103 (13%)

Query: 56  NFTTIPEQLDVGT--QVLDLSDNFLDRY---------TFRKLINLVELDLSYNQIQFVPS 104
            F++ P Q    +  +   +                       +L++L +  N I+ V  
Sbjct: 764 CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE 823

Query: 105 HILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSPN 147
            +      L  L ++ NP   I   +     +  +        
Sbjct: 824 KLTPQ---LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 12/92 (13%)

Query: 56  NFTTIPEQLDVGT----QVLDLSDNFLDR--------YTFRKLINLVELDLSYNQIQFVP 103
               IP   +  +      +D S N +              K IN   + LSYN+IQ  P
Sbjct: 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689

Query: 104 SHILDSILELRELKLSGNPIQKITHEAFINVP 135
           + +  +   +  + LS N +  I   +     
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKD 721

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 6/88 (6%)

Query: 56  NFTTIPEQLDVGT----QVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHILDSI 110
           N    P    +       +LD   N +     F   + L +L L YNQI+ +P       
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFT 618

Query: 111 LELRELKLSGNPIQKITHEAFI-NVPKL 137
            ++  L  S N ++ I +     +V  +
Sbjct: 619 DQVEGLGFSHNKLKYIPNIFNAKSVYVM 646

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.3 bits (146), Expect = 4e-10
 Identities = 12/93 (12%), Positives = 29/93 (31%), Gaps = 13/93 (13%)

Query: 56  NFTTIPE-----QLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHI- 106
               +       +L      L L  N ++            +  L  S+N+++++P+   
Sbjct: 584 KVRHLEAFGTNVKL----TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639

Query: 107 LDSILELRELKLSGNPIQKITHEAFINVPKLNL 139
             S+  +  +  S N I         ++     
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 3e-09
 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 15/96 (15%)

Query: 56  NFTTIPEQLDVGT---QVLDLSDNFL----------DRYTFRKLINLVELDLSYNQIQFV 102
                P +L         + LS+N +              ++    L  +DL +N++  +
Sbjct: 684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL 743

Query: 103 PSHILDSILE-LRELKLSGNPIQKITHEAFINVPKL 137
                 + L  L  + +S N          +N  +L
Sbjct: 744 SDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQL 778

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 10/68 (14%), Positives = 23/68 (33%)

Query: 69  QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
             L +  N + +   +    L  LD++ N    +    +   +E     L  +  Q I  
Sbjct: 809 IQLQIGSNDIRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRG 868

Query: 129 EAFINVPK 136
              + + +
Sbjct: 869 CDALGIER 876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.8 bits (111), Expect = 9e-06
 Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 9/95 (9%)

Query: 69  QVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
             L L+             +L  L  L    +          D  L     +   + I+ 
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385

Query: 126 ITHEAFINVP-KLNLEDFAC-----SPNIRPITPD 154
              + F++   +LNL D        +P ++PI  D
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 15/92 (16%)

Query: 69  QVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVP------SHILDSILELRELK-- 117
             ++L +             L  L  L+++ N+           + + D      +++  
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 118 -LSGNPIQKITHEAFINVPKL-NLEDFACSPN 147
            +  N +++    A +   K+  L    C  N
Sbjct: 554 YMGYNNLEEFPASASLQ--KMVKLGLLDCVHN 583

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 65.7 bits (159), Expect = 2e-12
 Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 14/116 (12%)

Query: 146 PNIRPITPDVTAEENENVTLSC---RATGSPVPKIKWIF------KEKIIANISSGLANM 196
           P +   +P +     E+V + C   R     V ++ W+F        + +    S L+  
Sbjct: 6   PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65

Query: 197 NKR-----QYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV 247
             R       +  T ++  +L +  V  +D GIYTC  +     +     + +  +
Sbjct: 66  TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL 121

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 61.8 bits (149), Expect = 5e-11
 Identities = 21/136 (15%), Positives = 37/136 (27%), Gaps = 19/136 (13%)

Query: 150 PITPDVTAEENENVTLSCRATGSPVP---KIKWIFKEKIIANISSGLANMNKRQYIIKTI 206
               D+     +   + C    +      K+ W+F         + L+  +  +      
Sbjct: 123 EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQS 182

Query: 207 NSLSN---------------LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAV 251
                               + +  V  SD GIYTC    G  E    I L+V++ E   
Sbjct: 183 LGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQR 242

Query: 252 AQPDPVYLVASLTTVV 267
               P          +
Sbjct: 243 TIS-PTPPTDKGQQGI 257

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 66.4 bits (161), Expect = 2e-12
 Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 9/104 (8%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPK----IKWIFKEKIIANISSGLANMNKRQY 201
                + P +     E   ++C A  + +      I W      I  +  G+ ++     
Sbjct: 229 RFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSG 288

Query: 202 IIKTINSLSNLTIVAVTMSDSG-IYTCRAKNGAGEVFTNISLNV 244
            I      + L    VT    G  YTCR  N   +     ++ +
Sbjct: 289 GITE----ATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 63.3 bits (153), Expect = 2e-11
 Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 13/122 (10%)

Query: 146 PNIRPITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
           P+  P T ++   +   + L C          I W    + +         ++  +Y   
Sbjct: 129 PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQEL--------IIDGTKYSQS 180

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLT 264
                 NL I    + DSG Y C        +  +I ++  K+ T +   D  + +    
Sbjct: 181 G----QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDP 236

Query: 265 TV 266
            +
Sbjct: 237 KI 238

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 54.1 bits (129), Expect = 3e-08
 Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 6/97 (6%)

Query: 152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN 211
           T +  A   E  +  C      +   ++  K+ ++     G       + +        +
Sbjct: 36  TMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKN-----GD 90

Query: 212 LTIVAVTMSDSG-IYTCRAKNGAGEVFTNISLNVIKV 247
           L I   T +DS   Y C      G+    I  + I+ 
Sbjct: 91  LWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRK 127

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.2 bits (164), Expect = 2e-12
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 56  NFTTIPEQLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILE 112
           N + +      G + + L++N    L          +  LDL  N+I  V    L +  +
Sbjct: 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 113 -LRELKLSGNPIQKITHEAF 131
            L  L L  N I  +  +  
Sbjct: 170 TLEHLNLQYNFIYDVKGQVV 189

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 68  TQVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
            ++  ++D+ L        +   N+ ELDLS N +  + +  L    +L  L LS N + 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 125 KITHEAFINVPKL 137
           +       ++  L
Sbjct: 72  ET--LDLESLSTL 82

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.6 bits (152), Expect = 7e-11
 Identities = 10/65 (15%), Positives = 23/65 (35%)

Query: 69  QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
           + L  ++N + R +  +      + L+ N+I  +          ++ L L  N I  +  
Sbjct: 102 ETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 129 EAFIN 133
                
Sbjct: 162 AELAA 166

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 69  QVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
           ++L+LS N L        L  L  LDL+ N +Q +          +  L  + N I +++
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNISRVS 115

Query: 128 HEAFINVPKLNLED 141
                    + L +
Sbjct: 116 CSRGQGKKNIYLAN 129

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.6 bits (147), Expect = 3e-10
 Identities = 24/174 (13%), Positives = 42/174 (24%), Gaps = 19/174 (10%)

Query: 56  NFTTIPEQLDVGT-QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDSILE 112
               +  Q+     + LDLS N L      F+    +  + L  N++  +    L     
Sbjct: 180 FIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK-ALRFSQN 238

Query: 113 LRELKLSGNPIQKITHEAFI----NVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCR 168
           L    L GN     T   F      V  +  +        +                 C 
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG-QNEEECTVPTLGHYGAYCCE 297

Query: 169 ATGSPVPKIKWIFKEK----------IIANISSGLANMNKRQYIIKTINSLSNL 212
              +P        K K              +     N  +++ I         +
Sbjct: 298 DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTV 351

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 11/55 (20%), Positives = 24/55 (43%)

Query: 83  FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
            +         ++ + ++   + +  S   ++EL LSGNP+ +I+        KL
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 8/72 (11%), Positives = 19/72 (26%), Gaps = 2/72 (2%)

Query: 69  QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI 126
            +L    +  +R            E+D    Q + V   +         L+     + + 
Sbjct: 316 ALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQ 375

Query: 127 THEAFINVPKLN 138
                    +L+
Sbjct: 376 VSNGRRAHAELD 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 6/63 (9%), Positives = 16/63 (25%), Gaps = 3/63 (4%)

Query: 69  QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
           + +D               +    + L+     +    S+   +  EL           +
Sbjct: 339 REIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398

Query: 126 ITH 128
           + H
Sbjct: 399 LQH 401

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 66.8 bits (162), Expect = 3e-12
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 22/97 (22%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
            R    + T  EN   T  C+A G+P+P++K   K+                        
Sbjct: 373 ERDCPGNWTWPENSQQTPMCQAWGNPLPELKC-LKDGTF--------------------- 410

Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
            L     V VT    G Y CRA++  GEV   +++NV
Sbjct: 411 PLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 447

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 11/99 (11%), Positives = 23/99 (23%), Gaps = 21/99 (21%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P    I       E   VT+ C A       +  +  + +                    
Sbjct: 284 PAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPR----------------- 326

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
               + L + A    +   ++C A         + +   
Sbjct: 327 ----AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTR 361

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 44.9 bits (105), Expect = 3e-05
 Identities = 23/128 (17%), Positives = 36/128 (28%), Gaps = 14/128 (10%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPI-TPDVTAEENENVTLSCRATGS-PVPKIK 178
             ++    E F N            P   P        E +   T+ C   G  PV + +
Sbjct: 163 LDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQ 222

Query: 179 WIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY--TCRAKNGAGEV 236
                         L +      +    +S S    V+VT  D G    TC    G    
Sbjct: 223 VHLA----------LGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQ 272

Query: 237 FTNISLNV 244
            T  ++ +
Sbjct: 273 ETLQTVTI 280

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 44.1 bits (103), Expect = 4e-05
 Identities = 14/115 (12%), Positives = 28/115 (24%), Gaps = 16/115 (13%)

Query: 146 PNIRPITP-DVTAEENENVTLSCRATGS---PVPKIKWIFKEKIIANISSGLANMNKRQY 201
           P    + P        +N+TL C+  G        +  +  EK +    +          
Sbjct: 86  PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAE---- 141

Query: 202 IIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDP 256
                      T++         ++CR +         +  N            P
Sbjct: 142 --------VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLP 188

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 8/92 (8%), Positives = 20/92 (21%), Gaps = 16/92 (17%)

Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
             V      +V ++C  +      +             + L            +   +  
Sbjct: 7   SKVILPRGGSVLVTCSTSCDQPMLLGI----------ETPLPKKE------LLLPGNNRK 50

Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
                 + +     C +    G+      L V
Sbjct: 51  VYELSNVQEDSQPMCYSNCPDGQSTAKTFLTV 82

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 63.3 bits (154), Expect = 3e-12
 Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 19/96 (19%)

Query: 151 ITPDVTAEENENVTLSCRATGS-PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL 209
            TP +  +E E + L C +    P+ K+ +    K                         
Sbjct: 91  QTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLD----------------- 133

Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNV 244
              +I     S SG Y C    G     +  +++ V
Sbjct: 134 PTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 59.8 bits (145), Expect = 5e-11
 Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 22/116 (18%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSP-VPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
             ++   P +   + ++VTL+C+   SP    I+W     +I   +              
Sbjct: 5   AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ------------- 51

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLV 260
                          +DSG YTC+    +      + L V+     +  P   +  
Sbjct: 52  ------PSYRFKANNNDSGEYTCQTGQTSLS--DPVHLTVLFEWLVLQTPHLEFQE 99

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 64.9 bits (158), Expect = 3e-12
 Identities = 23/125 (18%), Positives = 34/125 (27%), Gaps = 24/125 (19%)

Query: 145 SPNIRPITPDVTAEENENVTLSCRATGS-PVPKIKWIFKEKIIANISSGLANMNKRQYII 203
              +          E E + L C A     V  + +    K                   
Sbjct: 82  RGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWN----------- 130

Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASL 263
                 SNLTI+   +S +G Y C            IS+ V              L AS+
Sbjct: 131 ------SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTV------KELFPAPVLNASV 178

Query: 264 TTVVT 268
           T+ + 
Sbjct: 179 TSPLL 183

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 62.2 bits (151), Expect = 3e-11
 Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 18/116 (15%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWI 180
              +  +    + V     E F  +P +   +      E   VTLSC            +
Sbjct: 152 GKHRYTSAGISVTV----KELFP-APVLN-ASVTSPLLEGNLVTLSCETKLLLQRPGLQL 205

Query: 181 FKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
           +                     ++  N+ S   I+     DSG+Y C A    G V
Sbjct: 206 YFSF------------YMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNV 249

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 56.1 bits (135), Expect = 3e-09
 Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 22/109 (20%)

Query: 153 PDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN 211
           P V+  + E VTL C     P     +W F        S+                   +
Sbjct: 9   PWVSVFQEETVTLHCEVLHLPGSSSTQW-FLNGTATQTSTP------------------S 49

Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLV 260
             I + +++DSG Y C+           I L + +    +     V+  
Sbjct: 50  YRITSASVNDSGEYRCQRGLSGRS--DPIQLEIHRGWLLLQVSSRVFTE 96

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 64.0 bits (155), Expect = 3e-12
 Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 13/121 (10%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
             P      A+  ++V+L+C  TG   P   W  +     N              +    
Sbjct: 5   TTP-ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK------------VTNEG 51

Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVV 267
           + S LT+  V+  +   Y C A   + ++   I + +              L A     V
Sbjct: 52  TTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITV 111

Query: 268 T 268
            
Sbjct: 112 K 112

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 50.9 bits (121), Expect = 9e-08
 Identities = 16/134 (11%), Positives = 33/134 (24%), Gaps = 23/134 (17%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGS---PVPKI 177
              +K+     + +           P    I      E  + +T+ C           +I
Sbjct: 75  CESRKLEKGIQVEIYSF--------PKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEI 126

Query: 178 KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
             +  + ++ +         +             +T   V      +  CRAK    E+ 
Sbjct: 127 DLLKGDHLMKSQEFL-----EDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD 181

Query: 238 -------TNISLNV 244
                      L V
Sbjct: 182 SVPTVRQAVKELQV 195

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 61.6 bits (150), Expect = 3e-12
 Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 14/91 (15%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           ++  EE      +C+ T  P   + W      +             ++          LT
Sbjct: 17  NLQVEEKGTAVFTCK-TEHPAATVTWRKGLLEL---------RASGKHQPSQEGLTLRLT 66

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           I A+  +DS  YTC      G+  +   L V
Sbjct: 67  ISALEKADSDTYTCD----IGQAQSRAQLLV 93

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 61.2 bits (149), Expect = 3e-12
 Identities = 14/85 (16%), Positives = 24/85 (28%), Gaps = 7/85 (8%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
           + P+  D      + V ++   +     ++ W  K  +            K +Y  K   
Sbjct: 12  VTPLE-DQQVFVGDRVEMAVEVS-EEGAQVMW-MKNGVELTREDSF----KARYRFKKDG 64

Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNG 232
               L    V   D G Y      G
Sbjct: 65  KRHILIFSDVVQEDRGRYQVITNGG 89

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 61.7 bits (150), Expect = 4e-12
 Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 18/117 (15%)

Query: 144 CSPNIRPITP----DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKR 199
              +   + P     V A   E V L+C     P  +++W  K+     +          
Sbjct: 8   TDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRW-TKDG--EEVVES------P 57

Query: 200 QYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDP 256
             +++  +++  L + AV + DSG Y C       +   + ++ V +    +    P
Sbjct: 58  ALLLQKEDTVRRLVLPAVQLEDSGEYLCE----IDDESASFTVTVTEPPVRIIYSGP 110

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 14/91 (15%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
            +T   +E V L+C  +        W    + +               ++K       L 
Sbjct: 19  SLTFTTSERVVLTCELSR-VDFPATWYKDGQKV---------EESELLVVKMDGRKHRLI 68

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           +    + DSG + CR       V     + V
Sbjct: 69  LPEAKVQDSGEFECR----TEGVSAFFGVTV 95

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 63.5 bits (155), Expect = 5e-12
 Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 31/130 (23%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYT------------ 82
           CPS C C       TV C ++  T++P  +   T  LDL  N L                
Sbjct: 1   CPSRCSC----SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQ 56

Query: 83  ---------------FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
                          F KL +L  L+LS NQ+Q +P+ + D + +L+EL L+ N +Q + 
Sbjct: 57  LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116

Query: 128 HEAFINVPKL 137
              F  + +L
Sbjct: 117 DGVFDKLTQL 126

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 69  QVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
           + L L+ N L       F KL  L +L L  NQ++ VP  + D +  L+ + L  NP
Sbjct: 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 61.0 bits (148), Expect = 5e-12
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 1/96 (1%)

Query: 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL 209
           P+T +VT  E     L+CR   +    ++W    +         A  + R  +++     
Sbjct: 11  PLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHE 70

Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
            ++++  V++SD G YTC          +   L V+
Sbjct: 71  LSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVL 105

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 65.8 bits (159), Expect = 6e-12
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 8/119 (6%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK------IIANISSGLANMNKR 199
           P +   T   T +    VT++C        K K ++K+       +I +      N   R
Sbjct: 113 PGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGR 172

Query: 200 QYII--KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDP 256
             +    T   L ++ I  + +SD+G Y C+A + +     N  L V+K E  +   D 
Sbjct: 173 IRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDL 231

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 59.6 bits (143), Expect = 5e-10
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 7/121 (5%)

Query: 150 PITPDVTAEENENVTLSC----RATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
            +  +VTA   E + + C    + +       KW         + S     +K       
Sbjct: 447 KVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKW--NNTGCQALPSQDEGPSKAFVNCDE 504

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNG-AGEVFTNISLNVIKVETAVAQPDPVYLVASLT 264
            + L +LT+  VT +D G Y C  K G        + + V + + A ++   +    +  
Sbjct: 505 NSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAP 564

Query: 265 T 265
            
Sbjct: 565 D 565

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 57.7 bits (138), Expect = 2e-09
 Identities = 12/100 (12%), Positives = 27/100 (27%), Gaps = 10/100 (10%)

Query: 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK--------IIANISSGLANMNKRQY 201
                V      +V + C         IK+    +        ++ +    +    + + 
Sbjct: 336 RSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRL 395

Query: 202 IIK--TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN 239
            +     N    + +  +T  D+G Y C          T 
Sbjct: 396 SLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTV 435

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 50.8 bits (120), Expect = 4e-07
 Identities = 10/93 (10%), Positives = 23/93 (24%), Gaps = 6/93 (6%)

Query: 151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
               +  E        CR +      +      K        +    + +      +   
Sbjct: 237 FHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDK------DGSF 290

Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLN 243
           ++ I  +   D+G Y C A +       +    
Sbjct: 291 SVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQA 323

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 48.1 bits (113), Expect = 3e-06
 Identities = 16/125 (12%), Positives = 43/125 (34%), Gaps = 10/125 (8%)

Query: 154 DVTAEENENVTLSCR---ATGSPVPKIKWI-----FKEKIIANISSGLANMNKRQYII-- 203
           +V + E  +V+++C     + +   +  W           + +    +++    +  +  
Sbjct: 9   EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTN 68

Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASL 263
              N    + I  ++  DSG Y C     +  +  ++SL V +    +       +    
Sbjct: 69  FPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGR 128

Query: 264 TTVVT 268
           T  + 
Sbjct: 129 TVTIN 133

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 60.0 bits (146), Expect = 8e-12
 Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 14/98 (14%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
           + P+T D T    + + L C  + +     KW      +          + R   +    
Sbjct: 11  LTPLT-DQTVNLGKEICLKCEISENI--PGKWTKNGLPVQE--------SDR-LKVVQKG 58

Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
            +  L I      D G Y                ++VI
Sbjct: 59  RIHKLVIANALTEDEGDYVFAPDAYNVT--LPAKVHVI 94

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 17/92 (18%), Positives = 26/92 (28%), Gaps = 14/92 (15%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
            V                    K++W      I+         + + Y + T  +   LT
Sbjct: 17  SVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISA--------SNK-YGLATEGTRHTLT 66

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
           +  V  +D G Y       AG       L VI
Sbjct: 67  VREVGPADQGSYAVI----AGSSKVKFDLKVI 94

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 64.5 bits (156), Expect = 1e-11
 Identities = 19/148 (12%), Positives = 39/148 (26%), Gaps = 19/148 (12%)

Query: 144 CSPNIRPITPDVTAEENENVTLSCR-----------ATGSPVPKIKWIFKEKIIANISSG 192
           C          +   E+E   + C               S    + W +  +   ++   
Sbjct: 6   CDDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIW-YWTRQDRDLEEP 64

Query: 193 LANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVA 252
           +        I K       L      ++D+G YTC  +N          L V++ ++   
Sbjct: 65  INFRLPENRISK---EKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFN 121

Query: 253 ----QPDPVYLVASLTTVVTIILTACFV 276
                P     +      +T      + 
Sbjct: 122 SPMKLPVHKLYIEYGIQRITCPNVDGYF 149

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 59.1 bits (142), Expect = 6e-10
 Identities = 22/119 (18%), Positives = 34/119 (28%), Gaps = 16/119 (13%)

Query: 155 VTAEENENVTLSCRAT----GSPVPKIKWIFKEKIIANISS-GLANMNKRQYIIKTINSL 209
              E  E + + C            ++ W    K   +I+     N +      +     
Sbjct: 236 YEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRT 295

Query: 210 SNLTIVAVTMSD-SGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDP---VYLVASLT 264
             L+I  VT  D    Y C A++  GEV     +           P P   V L     
Sbjct: 296 QILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKV-------PAPRYTVELACGFG 347

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 54.5 bits (130), Expect = 2e-08
 Identities = 26/166 (15%), Positives = 47/166 (28%), Gaps = 24/166 (14%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCR-----ATGSPVP 175
           N          + V    ++  +C  +   +       E     ++C         S  P
Sbjct: 100 NTTYCSKVAFPLEV----VQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKP 155

Query: 176 KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE 235
            I W      I N +               I    NL+ +   +S++G YTC        
Sbjct: 156 TITWYMGCYKIQNFN-------------NVIPEGMNLSFLIALISNNGNYTCVVTYPENG 202

Query: 236 VFTNIS--LNVIKVETAVAQPDPVYLVASLTTVVTIILTACFVVLC 279
              +++  L V  V +      PV    +   V         ++ C
Sbjct: 203 RTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPC 248

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 60.1 bits (146), Expect = 1e-11
 Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 10/83 (12%)

Query: 154 DVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
            +   E E+ +  C  +  S      W    K + +        + R +          L
Sbjct: 17  TMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGS--------SSR-FQATRQGRKYIL 67

Query: 213 TIVAVTMSDSGIYTCRAKNGAGE 235
            +     SD+G      +    +
Sbjct: 68  VVREAAPSDAGEVVFSVRGLTSK 90

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 64.0 bits (155), Expect = 1e-11
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 9/102 (8%)

Query: 146 PNIRPITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
           P        V           C +T G P  +I W      + N S     ++       
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSG------ 171

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGE--VFTNISLNV 244
           T+   S   +V  +  D    TC+ ++ + E      ++L V
Sbjct: 172 TVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTV 213

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 62.8 bits (152), Expect = 3e-11
 Identities = 15/104 (14%), Positives = 27/104 (25%), Gaps = 17/104 (16%)

Query: 142 FACSPNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQ 200
           +    +I     +         TL+C A  +P P    W      +              
Sbjct: 215 YPPEVSISG-YDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF----------- 262

Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
                +   + L I  V    +    C   N  G     +++ V
Sbjct: 263 ----AVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 56.6 bits (136), Expect = 3e-09
 Identities = 20/133 (15%), Positives = 38/133 (28%), Gaps = 17/133 (12%)

Query: 152 TPDVTAEENENVTLSCRATGSPVP-----KIKWIFKEKIIANISSGLANMNK------RQ 200
              V     ++VTL C      +      ++ W  +     +++              R 
Sbjct: 7   PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTW-ARHGESGSMAVFHQTQGPSYSESKRL 65

Query: 201 YIIKTINSLS----NLTIVAVTMSDSGIYTCRAKN-GAGEVFTNISLNVIKVETAVAQPD 255
             +           +L +  + + D G YTC       G    +I L V+      A+  
Sbjct: 66  EFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQ 125

Query: 256 PVYLVASLTTVVT 268
            V L      +  
Sbjct: 126 KVQLTGEPVPMAR 138

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 59.2 bits (144), Expect = 1e-11
 Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 11/84 (13%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
            +P+   V     E        +  P    +W  K + +A         +     I    
Sbjct: 9   EKPLY-GVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAA--------SPD-CEIIEDG 57

Query: 208 SLSNLTIVAVTMSDSGIYTCRAKN 231
               L +    +  +G  + +A N
Sbjct: 58  KKHILILHNCQLGMTGEVSFQAAN 81

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 15/101 (14%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
              A E    TL C    S V  ++W    + +            R Y +K   +   L 
Sbjct: 17  TKEASEGATATLQCEL--SKVAPVEWKKGPETL--------RDGGR-YSLKQDGTRCELQ 65

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQP 254
           I  ++++D+G Y+C      G+  T+ +L V  +     + 
Sbjct: 66  IHDLSVADAGEYSCM----CGQERTSATLTVRALPARFTEG 102

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 15/92 (16%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           +  A E     L C  +      ++W    + + +          R + ++   +   L 
Sbjct: 28  NEEATEGATAVLRCELSKMA--PVEWWKGHETLRD--------GDR-HSLRQDGARCELQ 76

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
           I  +   D+G Y C      G+  T+  L V 
Sbjct: 77  IRGLVAEDAGEYLCM----CGKERTSAMLTVR 104

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 63.2 bits (153), Expect = 2e-11
 Identities = 23/162 (14%), Positives = 51/162 (31%), Gaps = 27/162 (16%)

Query: 97  NQIQFVPSHILDSILELRELKLS----------GNPIQKITHEAFINV---PKLNLEDFA 143
            +++F+     D  + L  L+L             P      +  + V   P   +E   
Sbjct: 80  ERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEG-- 137

Query: 144 CSPNIRPITPDVTAEENENVTLSCR-ATGSPVPKIKWIFKEKIIANISSGLANMNKRQYI 202
                + +      ++++ +  +C  A G P   + W  +         G A   + +  
Sbjct: 138 ----TQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETR-------LKGEAEYQEIRNP 186

Query: 203 IKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
             T+  +S   +V    +      C           +++LNV
Sbjct: 187 NGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNV 228

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 58.6 bits (141), Expect = 7e-10
 Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 22/125 (17%)

Query: 121 NPIQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVP-KIKW 179
             + +      +NV       +     I     +    +  +V L+C+A  +P   +  W
Sbjct: 215 YHMDRFKESLTLNVQ------YEPEVTIEGFDGN-WYLQRMDVKLTCKADANPPATEYHW 267

Query: 180 IFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN 239
                   ++  G+              + +      +  S +G Y C A N  G     
Sbjct: 268 -TTLN--GSLPKGV-----------EAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQ 313

Query: 240 ISLNV 244
           + +N+
Sbjct: 314 VEVNI 318

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 57.1 bits (137), Expect = 2e-09
 Identities = 18/144 (12%), Positives = 45/144 (31%), Gaps = 16/144 (11%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSP----VPKIKWIFKEKIIANISSGLANMNK--- 198
             +  +   +      +V L C          + ++ W  K    +  +  + N +    
Sbjct: 15  SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTW-QKSTNGSKQNVAIYNPSMGVS 73

Query: 199 -------RQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG-AGEVFTNISLNVIKVETA 250
                  R   ++   +   + +  + + D G+Y C       G   + ++L V+   T 
Sbjct: 74  VLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTN 133

Query: 251 VAQPDPVYLVASLTTVVTIILTAC 274
             +     L A       +++  C
Sbjct: 134 WIEGTQAVLRAKKGQDDKVLVATC 157

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 59.0 bits (142), Expect = 3e-11
 Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 154 DVTAEENENVTLSCRATGSPV---PKIKWIFKEKIIANISSGLANMN-KRQYIIKTINSL 209
            V+ E  ++  +  +  G  +   P IKW FK K +   S   A  + K  +   +    
Sbjct: 21  SVSVETGKDAVVVAKVNGKELPDKPTIKW-FKGKWLELGSKSGARFSFKESHNSASNVYT 79

Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
             L I  V + D G Y    K          +++V
Sbjct: 80  VELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 60.3 bits (146), Expect = 4e-11
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 19/103 (18%)

Query: 145 SPNIRPITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYII 203
              +    P    +E + + L C +   + + K+ ++   K                   
Sbjct: 88  IGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHN----------- 136

Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNVI 245
                 S+  I   T+ DSG Y CR   G+  V +  +++ + 
Sbjct: 137 ------SDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT 173

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 22/108 (20%)

Query: 153 PDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN 211
              +  E ++VTL C+   SP     +W   E +I++ +S                   +
Sbjct: 15  QWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS-------------------S 55

Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYL 259
             I A T++DSG Y C+       +   + L V      +  P  V+ 
Sbjct: 56  YFIDAATVNDSGEYRCQTNL--STLSDPVQLEVHIGWLLLQAPRWVFK 101

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 60.3 bits (146), Expect = 4e-11
 Identities = 15/109 (13%), Positives = 31/109 (28%), Gaps = 7/109 (6%)

Query: 150 PITPDVTAEENENVTLSCR--ATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
               +      +++ L          +  IKW           +      +      T  
Sbjct: 4   TNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSD--KKKIAQFRKEKETFKEKDTYK 61

Query: 208 SLSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQP 254
              N  L I  +   D  IY     +  G+       ++ K++  V++P
Sbjct: 62  LFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDL-KIQERVSKP 109

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 56.4 bits (136), Expect = 9e-10
 Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 21/96 (21%)

Query: 149 RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS 208
           R   P ++     N TL+C       P++      K                     +  
Sbjct: 105 RVSKPKISWT-CINTTLTCEVMNGTDPELNLYQDGK--------------------HLKL 143

Query: 209 LSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
              +     T S S  + C A N   +  +   ++ 
Sbjct: 144 SQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSC 179

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 60.8 bits (148), Expect = 6e-11
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 26/125 (20%)

Query: 32  FAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVE 91
                  CEC     +E      K+   IP                          +   
Sbjct: 1   MGCSSPPCECH---QEEDFRVTCKDIQRIPS----------------------LPPSTQT 35

Query: 92  LDLSYNQIQFVPSHILDSILELRELKLSGN-PIQKITHEAFINVPKLNLEDFACSPNIRP 150
           L L    ++ +PSH   ++  +  + +S +  +Q++   +F N+ K+   +   + N+  
Sbjct: 36  LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95

Query: 151 ITPDV 155
           I PD 
Sbjct: 96  IDPDA 100

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 10/100 (10%)

Query: 51  LCKAKNFTTIPEQ----LDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQ-IQFV 102
           +      T+IP      L   T  L L +N    +  Y F     L  + L+ N+ +  +
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVI 195

Query: 103 PSHILDSILE-LRELKLSGNPIQKITHEAFINVPKLNLED 141
                  +      L +S   +  +  +   ++ +L   +
Sbjct: 196 DKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 58.8 bits (142), Expect = 1e-10
 Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 19/95 (20%)

Query: 152 TPDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
                  E + + L C       V K+ +                  K    +K      
Sbjct: 92  ASAEVVMEGQPLFLRCHGWRNWDVYKVIY-----------------YKDGEALKYWYENH 134

Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNV 244
           N++I   T+ DSG Y C  K    +  +  +++ V
Sbjct: 135 NISITNATVEDSGTYYCTGKVWQLDYESEPLNITV 169

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 54.9 bits (132), Expect = 3e-09
 Identities = 23/108 (21%), Positives = 33/108 (30%), Gaps = 22/108 (20%)

Query: 153 PDVTAEENENVTLSCRATGSP-VPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN 211
           P     + ENVTL+C       V   KW                      + +  NS  +
Sbjct: 12  PWNRIFKGENVTLTCNGNNFFEVSSTKWF-----------------HNGSLSEETNS--S 52

Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYL 259
           L IV     DSG Y C+ +         + L V      +     V +
Sbjct: 53  LNIVNAKFEDSGEYKCQHQQVNES--EPVYLEVFSDWLLLQASAEVVM 98

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 28/176 (15%), Positives = 45/176 (25%), Gaps = 59/176 (33%)

Query: 35  CPS-TCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDL-------------------- 73
           C    C C         LC+    T IP  L      L                      
Sbjct: 2   CHHRICHCS----NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLE 57

Query: 74  ----SDN-----------------------------FLDRYTFRKLINLVELDLSYNQIQ 100
               S N                             +++   F+ L NL  L +S   I+
Sbjct: 58  KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117

Query: 101 FVPSHILDSILELRELKLSGNP-IQKITHEAFINVPKLNLEDFACSPNIRPITPDV 155
            +P       L+   L +  N  I  I   +F+ +   ++  +     I+ I    
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 7/91 (7%)

Query: 58  TTIPE----QLDVGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSI 110
            TI       L   + +L L+ N    +    F             N ++ +P+ +    
Sbjct: 142 HTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA 201

Query: 111 LELRELKLSGNPIQKITHEAFINVPKLNLED 141
                L +S   I  +      N+ KL    
Sbjct: 202 SGPVILDISRTRIHSLPSYGLENLKKLRARS 232

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 56  NFTTIPEQLDVGTQ--VLDLSDN----FLDRYTFRKLINLVELDLSYNQIQFVPSHILDS 109
               I      GTQ   L+LSDN     L    F      V LD+S  +I  +PS+ L++
Sbjct: 165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224

Query: 110 ILELRELKLSGN 121
           + +LR       
Sbjct: 225 LKKLRARSTYNL 236

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 59.3 bits (143), Expect = 1e-10
 Identities = 20/129 (15%), Positives = 30/129 (23%), Gaps = 9/129 (6%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK--- 204
           I  + P V   E+ NV L        +    W        +        N          
Sbjct: 4   IEAVPPQVA--EDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAY 61

Query: 205 ----TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLV 260
                I S  +L    +TM D G+YT    +             +               
Sbjct: 62  SGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT 121

Query: 261 ASLTTVVTI 269
                 VT+
Sbjct: 122 VKELDSVTL 130

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 57.8 bits (139), Expect = 5e-10
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 13/94 (13%)

Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
            + T +E ++VTL+C +       I+W+F  + +         + +R   +    + S L
Sbjct: 118 TNTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSL--------QLTER---MTLSQNNSIL 165

Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNVI 245
            I  +   D+G Y C   N      +N I L++I
Sbjct: 166 RIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII 199

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 58.9 bits (142), Expect = 2e-10
 Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN--L 212
            T +   +V+L C        +++ I        + +  +  ++R  +++    L     
Sbjct: 12  YTVDVGSSVSLECDFDRRECTELEGIRASLQK--VENDTSLQSERATLLEEQLPLGKALF 69

Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
            I +V + DSG Y C    GA   +  +++ V
Sbjct: 70  HIPSVQVRDSGQYRCLVICGAAWDYKYLTVKV 101

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 50.0 bits (119), Expect = 2e-07
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 11/107 (10%)

Query: 138 NLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMN 197
            L     +  +R  T  +       V L+C+A G P+ ++ W           S  AN +
Sbjct: 96  YLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQ--------NVSVPANTS 147

Query: 198 KRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
             +         S L +       S  ++C   N   +  T+  ++ 
Sbjct: 148 HIRTPEGLYQVTSVLRL---KPQPSRNFSCMFWNAHMKELTSAIIDP 191

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 14/94 (14%)

Query: 56  NFTTIPEQLDVGT----QVLDLSDNFLDRY----------TFRKLINLVELDLSYNQIQF 101
               IP   D  +      +D S N +             T  K IN+  ++LS NQI  
Sbjct: 388 KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447

Query: 102 VPSHILDSILELRELKLSGNPIQKITHEAFINVP 135
            P  +  +   L  + L GN + +I   +  +  
Sbjct: 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 16/99 (16%)

Query: 56  NFTTIP---------EQLDVGTQVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVP 103
           +F+  P         +   +  Q  D   N   R          +L +L +  N I+ V 
Sbjct: 524 SFSKFPTQPLNSSTLKGFGIRNQ-RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVN 582

Query: 104 SHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDF 142
             I  +   +  L +  NP   I         +  +   
Sbjct: 583 EKITPN---ISVLDIKDNPNISIDLSYVCPYIEAGMYML 618

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 14/97 (14%)

Query: 56  NFTTIPEQLDVGT---QVLDLSDNFL----DRYTFRKLINLVELDLSYNQIQFVPSHILD 108
             T IP      T   + L  + N L    + +  + +  +  +D SYN+I  V     D
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423

Query: 109 SILE-------LRELKLSGNPIQKITHEAFINVPKLN 138
            +         +  + LS N I K   E F     L+
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 13/93 (13%)

Query: 56  NFTTIPEQLDVGT----QVLDLSDNFLDRYT-----FRKLINLVELDLSYNQIQFVPSHI 106
           N  T P +  +       +L+   N L         F   I L  L+L+YNQI  +P++ 
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQL---EGKLPAFGSEIKLASLNLAYNQITEIPANF 372

Query: 107 LDSILELRELKLSGNPIQKITHEAFI-NVPKLN 138
                ++  L  + N ++ I +     +V  ++
Sbjct: 373 CGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 10/89 (11%)

Query: 56  NFTTIPEQLDVGT----QVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHI-L 107
                      G+      L+L+ N +             +  L  ++N+++++P+    
Sbjct: 341 QLEGKLPAF--GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398

Query: 108 DSILELRELKLSGNPIQKITHEAFINVPK 136
            S+  +  +  S N I  +  + F  +  
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 16/86 (18%)

Query: 56  NFTTIPEQLDVGT----QVLDLSDNFLDR----------YTFRKLINLVELDLSYNQIQF 101
             +  P++L   T      ++L  N L              F+    L  +DL +N++  
Sbjct: 444 QISKFPKEL-FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

Query: 102 VPSHILDSILE-LRELKLSGNPIQKI 126
           +      + L  L  + LS N   K 
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSFSKF 528

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 14/99 (14%)

Query: 56  NFTTIPEQLDVGT----QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDS 109
             T + +     T      +DLS N   +          L    +   +     +  L  
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRD-AQGNRTLRE 557

Query: 110 ILE-------LRELKLSGNPIQKITHEAFINVPKLNLED 141
             E       L +L++  N I+K+  +   N+  L+++D
Sbjct: 558 WPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKD 596

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 6/83 (7%)

Query: 58  TTIPEQLDVGT----QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILEL 113
              PE +          L +  N + +   +   N+  LD+  N    +    +   +E 
Sbjct: 556 REWPEGI--TLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEA 613

Query: 114 RELKLSGNPIQKITHEAFINVPK 136
               L  +  Q I     +++ +
Sbjct: 614 GMYMLFYDKTQDIRGCDALDIKR 636

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 11/108 (10%), Positives = 36/108 (33%), Gaps = 14/108 (12%)

Query: 44  KGGKETVLCKAKNFTTIPEQLD--VGTQVLDLSDNFLDRY---TFRKLINLVELDLSYNQ 98
           +  +      A+ + T   + D       +++ +           + L  +  ++++ N+
Sbjct: 225 EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284

Query: 99  IQFVPSHILD-SIL-------ELRELKLSGNPIQKITHEAFI-NVPKL 137
                    D   L       +++ + +  N ++    E  +  + KL
Sbjct: 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 59.2 bits (143), Expect = 2e-10
 Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 6/99 (6%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
            N       V         L+C+A G P  ++ W   +     + SG       +   K 
Sbjct: 117 YNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDH---QVLSGKTTTTNSKREEKL 173

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
            N  S L I     + + I+ C  +    E      L +
Sbjct: 174 FNVTSTLRI---NTTTNEIFYCTFRRLDPEENHTAELVI 209

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 45.4 bits (107), Expect = 8e-06
 Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 15/117 (12%)

Query: 155 VTAEENENVTLSCRATGSPVP-----KIKWIFKEKIIANISSG-------LANMNKRQYI 202
              E   N+T+ C+             + W  ++K I     G        ++  +R  +
Sbjct: 11  YVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARL 70

Query: 203 IKTINSLSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPV 257
           +K   SL N  L I  V + D+G+Y C    G G  +  I++ V      + Q   V
Sbjct: 71  LKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQRILV 126

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 58.5 bits (141), Expect = 2e-10
 Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 8/125 (6%)

Query: 155 VTAEENENVTLSCRATGSP----VPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
           VT E  E  TLSC    S       +I W  ++K++  + SG  N+   +Y  +TI  ++
Sbjct: 4   VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIW-PEYKNRTIFDIT 62

Query: 211 N---LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVV 267
           N   + I+A+  SD G Y C       + F    L  + +      P P      + T  
Sbjct: 63  NNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSN 122

Query: 268 TIILT 272
              + 
Sbjct: 123 IRRII 127

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 8/115 (6%)

Query: 123 IQKITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATG-SPVPKIKWIF 181
           + K   +AF       +     +    P   D     +    + C  +G  P P + W+ 
Sbjct: 84  VLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLE 143

Query: 182 KEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
             + +  I++ ++   +     +     S L      M+ +  + C  K G   V
Sbjct: 144 NGEELNAINTTVSQDPET----ELYAVSSKLD---FNMTTNHSFMCLIKYGHLRV 191

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 58.4 bits (141), Expect = 3e-10
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 19/102 (18%)

Query: 145 SPNIRPITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYII 203
              +    P    +E + + L C +   + + K+ ++   K                   
Sbjct: 88  IGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHN----------- 136

Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNV 244
                 S+  I   T+ DSG Y CR   G+  V +  + + +
Sbjct: 137 ------SDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITI 172

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 54.1 bits (130), Expect = 8e-09
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 22/108 (20%)

Query: 153 PDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN 211
                 E ++VTL C+   SP     +W   E +I++ +S                   +
Sbjct: 15  QWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS-------------------S 55

Query: 212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYL 259
             I A T+ DSG Y C+ +         + L V      +  P  V+ 
Sbjct: 56  YFIDAATVDDSGEYRCQTQLSTLS--DPVQLEVHIGWLLLQAPRWVFK 101

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 60.9 bits (147), Expect = 3e-10
 Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 8/130 (6%)

Query: 144 CSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYII 203
                     +V     +  T  C A G  V   +   +   + +         K   + 
Sbjct: 163 TRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAP------LKEIKVT 216

Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASL 263
            +   +++  +V  T  D+G Y C  +   G   +N +  V  V+       P  L +  
Sbjct: 217 SSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELV--VKEPPVPIAPPQLASVG 274

Query: 264 TTVVTIILTA 273
            T + I L A
Sbjct: 275 ATYLWIQLNA 284

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 57.2 bits (138), Expect = 5e-10
 Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 4/95 (4%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKR-QYIIKTINSLSNL 212
            +      NVT     +  P+ ++ W  ++  +A + +         +  +       +L
Sbjct: 4   QIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62

Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV 247
           TI  +T SD   Y   + N          L V+++
Sbjct: 63  TIYNLTSSDEDEYEMESPNITDT--MKFFLYVLEM 95

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 13/97 (13%), Positives = 29/97 (29%), Gaps = 20/97 (20%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
           +  ++  +   E  N TL+C        ++K    ++                     + 
Sbjct: 93  LEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKE--------------------HLR 132

Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           SL   T+     +    + C+A N   +      +N 
Sbjct: 133 SLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 169

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 57.9 bits (139), Expect = 6e-10
 Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 19/145 (13%)

Query: 150 PITPDVTAEENENVTLSCRATGSP-VPKIKWIFKEK------IIANISSGLANMNKRQYI 202
            + P V     ++V L C  TG+     ++W   ++      + +    G          
Sbjct: 5   SVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDT 64

Query: 203 IK-----TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNVIKVETAVAQPDP 256
                   ++S   L +    + D   Y C  + GA         LNV       A+P+ 
Sbjct: 65  RGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVF------AKPEA 118

Query: 257 VYLVASLTTVVTIILTACFVVLCII 281
             +  +  T+  +  +A  +  C  
Sbjct: 119 TEVSPNKGTLSVMEDSAQEIATCNS 143

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 5/89 (5%)

Query: 152 TPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL- 209
                 E++     +C +  G+P PKI W    + +                ++  + L 
Sbjct: 126 GTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLL 185

Query: 210 ---SNLTIVAVTMSDSGIYTCRAKNGAGE 235
              S L +          + C A     E
Sbjct: 186 SLTSTLYLRLRKDDRDASFHCAAHYSLPE 214

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 54.9 bits (132), Expect = 8e-10
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 8/107 (7%)

Query: 154 DVTAEENENVTLSCRAT-GSPVPKIKWIF--KEKIIANISSGLANMNKR-QYIIKTINSL 209
            +T     NVTL+   +      ++ W +   +KI+   S        + +  ++     
Sbjct: 13  HMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQS 72

Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNVIKVETAVAQPD 255
             L I  V   D+  Y  R     G      I L V+     V +P 
Sbjct: 73  GALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLD---PVPKPV 116

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 54.9 bits (132), Expect = 9e-10
 Identities = 20/98 (20%), Positives = 46/98 (46%), Gaps = 4/98 (4%)

Query: 152 TPDVTAEENENVTLSCRATGSP--VPKIKWIFKEKIIANISSGLANMNKRQYIIK-TINS 208
           T +++AE+  ++ L C  + +   V ++ W  +++++A  ++ L       +  +     
Sbjct: 10  TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGP 69

Query: 209 LSNLTIVAVTMSDSGIYTCR-AKNGAGEVFTNISLNVI 245
              LT+ ++T++D+G Y C       G     I L V+
Sbjct: 70  GLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVL 107

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 56.5 bits (136), Expect = 9e-10
 Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 11/118 (9%)

Query: 155 VTAEENENVTLSCR--ATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSN- 211
           V       + L+         + +++W     ++A          K          L+N 
Sbjct: 6   VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRK----MKPFLKSGAFEILANG 61

Query: 212 -LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLTTVVT 268
            L I  +T  DSG Y     +  G    N +L++  +E       P+         +T
Sbjct: 62  DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV---SKPMIYWECSNATLT 116

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 51.5 bits (123), Expect = 4e-08
 Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 20/95 (21%)

Query: 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL 209
            ++  +   E  N TL+C        ++K    ++                     + SL
Sbjct: 100 MVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKE--------------------HLRSL 139

Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
              T+     +    + C+A N   +      +N 
Sbjct: 140 RQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.7 bits (136), Expect = 5e-09
 Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 8/110 (7%)

Query: 40  ECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQ 98
           +       + +  K     ++ +      +VL L+   L       +L+ +  LDLS+N+
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR 474

Query: 99  IQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL-NLEDFACSPN 147
           ++ +P   L ++  L  L+ S N ++ +       V  L  L++     N
Sbjct: 475 LRALPPA-LAALRCLEVLQASDNALENVD-----GVANLPRLQELLLCNN 518

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.2 bits (127), Expect = 6e-08
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 58  TTIPEQLDVGT--QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPS-HILDSILEL 113
             +P  L      +VL  SDN L+       L  L EL L  N++Q   +   L S   L
Sbjct: 476 RALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

Query: 114 RELKLSGNPIQKI 126
             L L GN + + 
Sbjct: 536 VLLNLQGNSLCQE 548

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.0 bits (116), Expect = 1e-06
 Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 13/120 (10%)

Query: 40  ECKWKGGKETVLCKAKNFTTIP--EQLDVGTQVLDLSDNFLDR--YTFRKLINLVELDLS 95
                     +    K+ T +   EQL +    LDLS N L         L  L  L  S
Sbjct: 436 LKMEYADVRVLHLAHKDLTVLCHLEQL-LLVTHLDLSHNRLRALPPALAALRCLEVLQAS 494

Query: 96  YNQIQFVPSHILDSILELRELKLSGNPIQKITH-EAFINVPKL---NLED--FACSPNIR 149
            N ++ V    + ++  L+EL L  N +Q+    +  ++ P+L   NL+         I+
Sbjct: 495 DNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 54.6 bits (131), Expect = 5e-09
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 151 ITP-DVTAEENENVTLSCRATGS-PVPKIKWIFKEKIIANI------SSGLANMNKRQYI 202
           +TP  V     E+VTL         V  I W+F E  +A I      S  +   N +Q  
Sbjct: 3   LTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGK 62

Query: 203 IKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
                   +L +  + M D+G Y  +         ++ +L ++
Sbjct: 63  RLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRIL 105

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 25/140 (17%)

Query: 111 LELRELKL--SGNPIQKITHEAFINVPKLNLEDFACSPNIR-PITPDVTAEENENVTLSC 167
           L+L  LK+  +G+   +I+ +    +    L       NI+      +       + L+C
Sbjct: 72  LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTC 131

Query: 168 RAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT-MSDSGIY 225
                      +W                         T++S  NLT+     +S    Y
Sbjct: 132 SVEDADDNVSFRWEAL--------------------GNTLSSQPNLTVSWDPRISSEQDY 171

Query: 226 TCRAKNGAGEVFTNISLNVI 245
           TC A+N    +  ++S   +
Sbjct: 172 TCIAENAVSNLSFSVSAQKL 191

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 54.1 bits (130), Expect = 5e-09
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 152 TPDVTAEENENVTLSCRAT-GSPVPKIKWIF--KEKIIANISSGLANMNKRQYIIKTINS 208
            P+V A    NVTL+      +   ++ W+    +KI+    +G   + +  +  +    
Sbjct: 6   VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD 65

Query: 209 LSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV 247
            +N  L I  V+  D G Y  R  +   + +  I++ V ++
Sbjct: 66  KTNGALRIYNVSKEDRGDYYMRMLHETEDQWK-ITMEVYEM 105

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 48.0 bits (114), Expect = 8e-07
 Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 20/95 (21%)

Query: 150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL 209
            ++  +   E  N TL+C        ++K    ++ +                     SL
Sbjct: 105 MVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHL--------------------RSL 144

Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
              T+     +    + C+A N   +      +N 
Sbjct: 145 RQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 179

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 52.9 bits (126), Expect = 8e-09
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 1/111 (0%)

Query: 135 PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLA 194
            K   +      + +P T D T      V L C+        ++W    +         A
Sbjct: 28  DKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRA 87

Query: 195 NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
             + R  ++ +     +++I  V ++D G YTC              + V+
Sbjct: 88  LRDNRIQLVTSTPHELSISISNVALADEGEYTCSI-FTMPVRTAKSLVTVL 137

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 55.2 bits (132), Expect = 9e-09
 Identities = 15/141 (10%), Positives = 38/141 (26%), Gaps = 26/141 (18%)

Query: 146 PNIRPITPDVTAEENENVTLSC---RATGSPVPKIKWI----FKEKIIANISSGLANMNK 198
                           +V L      + G        +     K + +            
Sbjct: 93  IVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDV------------ 140

Query: 199 RQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVY 258
                  I++  ++TI   T   +G+YT +    + +   + S  ++     V Q     
Sbjct: 141 -------IDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVES 193

Query: 259 LVASLTTVVTIILTACFVVLC 279
              +L   +++       ++ 
Sbjct: 194 KTVALGNEISLNYVVSEDIVG 214

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 54.1 bits (129), Expect = 2e-08
 Identities = 20/136 (14%), Positives = 40/136 (29%), Gaps = 24/136 (17%)

Query: 145 SPNIRPITPDVTAEENENVTLSCRATGS-PVPK---IKWIFKEKIIANISSGLANMNKRQ 200
           +  +   +        +  TL+    G  P+P      W   ++   N ++         
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA--------- 52

Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNVIKVETAVAQPDPVYL 259
                      LT+   T  ++G Y    ++             + + E  V   +P + 
Sbjct: 53  ----------TLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHF 102

Query: 260 VASLTTVVTIILTACF 275
             S  T V +  T  F
Sbjct: 103 YVSSQTDVELHATVKF 118

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 19/116 (16%)

Query: 150 PITPDVTAEENENVTLSCR--------ATGSPVPKIKWI-FKEKIIANISSGLANMNKRQ 200
            +    T      ++L+          ++G P   IK+  + ++      + + +     
Sbjct: 189 DVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEA 248

Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG----------AGEVFTNISLNVIK 246
               +I    +L   + T  D+  + C AK            A       S+ V+K
Sbjct: 249 LEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSMEVVK 304

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLI-NLVELDLSYNQIQFVPSHILDSILELR 114
           N +++P+ L     VL+++ N L   +  +L  +L  LD   N++  +P    +    L+
Sbjct: 70  NLSSLPDNLPPQITVLEITQNALI--SLPELPASLEYLDACDNRLSTLP----ELPASLK 123

Query: 115 ELKLSGNPIQKI 126
            L +  N +  +
Sbjct: 124 HLDVDNNQLTML 135

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.4 bits (128), Expect = 6e-08
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 8/72 (11%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLI-NLVELDLSYNQIQFVPSHILDSILELR 114
              ++PE      + LD  DN L   T  +L  +L  LD+  NQ+  +P    +    L 
Sbjct: 91  ALISLPELPA-SLEYLDACDNRLS--TLPELPASLKHLDVDNNQLTMLP----ELPALLE 143

Query: 115 ELKLSGNPIQKI 126
            +    N +  +
Sbjct: 144 YINADNNQLTML 155

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 11/100 (11%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDR--YTFRKLINLVE----LDLSYNQIQFVPSHILDS 109
             T +PE  +   + LD+S N L+       +  +  E         N+I  +P +IL S
Sbjct: 171 QLTFLPELPE-SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENIL-S 228

Query: 110 ILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSPNIR 149
           +     + L  NP+         ++ +   +     P I 
Sbjct: 229 LDPTCTIILEDNPLSSRIR---ESLSQQTAQPDYHGPRIY 265

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 8/72 (11%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLI-NLVELDLSYNQIQFVPSHILDSILELR 114
             +T+PE      + LD+ +N L      +L   L  ++   NQ+  +P    +    L 
Sbjct: 111 RLSTLPELPA-SLKHLDVDNNQLT--MLPELPALLEYINADNNQLTMLP----ELPTSLE 163

Query: 115 ELKLSGNPIQKI 126
            L +  N +  +
Sbjct: 164 VLSVRNNQLTFL 175

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 10/91 (10%), Positives = 28/91 (30%), Gaps = 11/91 (12%)

Query: 58  TTIPEQLDVGT---QVLDLSDNFLDRYTFR----KLINLVELDLSYNQIQFVPSHILDSI 110
           +             +   L     +          +    EL L+   +  +P ++    
Sbjct: 23  SGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQ- 81

Query: 111 LELRELKLSGNPIQKITHEAFINVPKLNLED 141
             +  L+++ N +  +  E   ++  L+  D
Sbjct: 82  --ITVLEITQNALISL-PELPASLEYLDACD 109

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
           ++L++  N +   +    L  L  L L+ NQ+      ++  +  L  L LS N I  I 
Sbjct: 268 KMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI- 326

Query: 128 HEAFINVPKL 137
                ++ K+
Sbjct: 327 -RPLASLSKM 335

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.2 bits (126), Expect = 9e-08
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 69  QVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
             L L++N L   D      L NL  L LS N I  +    L S+ ++     +   I+K
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
             L + +N +   +    L  L  L++  NQI  + +  +  + +L+ L +  N I  I 
Sbjct: 224 NSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDI- 280

Query: 128 HEAFINVPKLNLEDFACSPN 147
                N+    L     + N
Sbjct: 281 -SVLNNLS--QLNSLFLNNN 297

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 69  QVLDLSDNFL-DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
           + L L+++ + D      L  +  L+L  N      S  L ++  L  L ++ + ++ + 
Sbjct: 113 RELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDV- 170

Query: 128 HEAFINVPKLN 138
                N+  L 
Sbjct: 171 -TPIANLTDLY 180

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
           + L+L+ N +   +    L+ L  L +  N+I  + +  L ++  LREL L+ + I  I 
Sbjct: 69  EYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDI- 125

Query: 128 HEAFINVPKL 137
                N+ K+
Sbjct: 126 -SPLANLTKM 134

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
                  N +   T    +  L  L +  N+I  +    L ++ +L  L++  N I  I 
Sbjct: 202 HYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI- 258

Query: 128 HEAFINVPKL 137
             A  ++ KL
Sbjct: 259 -NAVKDLTKL 267

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
             L ++++ +   T    L +L  L L+YNQI+ +    L S+  L       N I  I 
Sbjct: 158 NYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDI- 214

Query: 128 HEAFINVPKLN 138
                N+ +LN
Sbjct: 215 -TPVANMTRLN 224

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 69  QVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
               L    +    T  +L ++ +L ++  ++  +    ++ +  L  L L+GN I  I 
Sbjct: 25  IRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDI- 81

Query: 128 HEAFINVPKL 137
                N+ KL
Sbjct: 82  -SPLSNLVKL 90

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
             L +  N +   +  + L NL EL L+ + I  +    L ++ ++  L L  N    ++
Sbjct: 91  TNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGAN--HNLS 146

Query: 128 H-EAFINVPKL 137
                 N+  L
Sbjct: 147 DLSPLSNMTGL 157

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 67  GTQVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK 125
           G   L      +++      L   +   L    +  V +   + +  + +L ++G  +  
Sbjct: 1   GAATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS 58

Query: 126 ITH-EAFINVPKLNLED 141
           I   E   N+  LNL  
Sbjct: 59  IQGIEYLTNLEYLNLNG 75

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus} Length = 116

 Score = 49.9 bits (119), Expect = 4e-08
 Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 21/118 (17%)

Query: 153 PDVTAEENENVTLSCRATGSP-VPKIKWI--------FKEKIIANISSGLANMNKRQYII 203
            +V       VTL C  +    +    W          +  +I      +      +Y +
Sbjct: 5   VEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNL 64

Query: 204 KTINSLSN--LTIVAVTMSDSGIYTCRAKNG--AGEVFTNISLNVIKVETAVAQPDPV 257
           K   S  +  LTI     SDSG+Y CR +      +     SL V        +P+ V
Sbjct: 65  KGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQV--------KPELV 114

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126

 Score = 50.3 bits (120), Expect = 4e-08
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 19/110 (17%)

Query: 155 VTAEENENVTLSCRATGSPVPK----IKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
           +   + E   L C+ T SP  +    I+W+        +   +   +  +        L 
Sbjct: 15  IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLK 74

Query: 211 N---------------LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
                           + +  + +SD G Y C+ K   G     I L V+
Sbjct: 75  GRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 124

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 12/94 (12%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELR 114
           +   +P+      + +   +N L+     + L  L  +    N ++ +P    D  L L 
Sbjct: 164 SLKKLPDLP-PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLP----DLPLSLE 218

Query: 115 ELKLSGNPIQKITHEAFINVPKL-NLEDFACSPN 147
            +    N ++++       +  L  L       N
Sbjct: 219 SIVAGNNILEELP-----ELQNLPFLTTIYADNN 247

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 11/83 (13%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELR 114
             + +P  L    + L +S+N L++    +    L  +D+  N ++ +P    D    L 
Sbjct: 125 ALSDLPPLL----EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP----DLPPSLE 176

Query: 115 ELKLSGNPIQKITHEAFINVPKL 137
            +    N ++++      N+P L
Sbjct: 177 FIAAGNNQLEELPE--LQNLPFL 197

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 13/87 (14%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELR 114
           +   +P+   +  + +   +N L+     + L  L  +    N ++ +P    D    L 
Sbjct: 206 SLKKLPDLP-LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP----DLPPSLE 260

Query: 115 ELKLSGNPIQKITHEAFINVPKLNLED 141
            L +  N +  +  E   ++  L++ +
Sbjct: 261 ALNVRDNYLTDLP-ELPQSLTFLDVSE 286

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 23/105 (21%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDR-----YTFRKLI-------------NLVELDLSYN 97
           +   +PE      + L +  N L        +   L              NL +L +  N
Sbjct: 348 HLAEVPELPQ-NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406

Query: 98  QIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDF 142
            ++  P    D    + +L+++   +      A     KL  + F
Sbjct: 407 PLREFP----DIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVF 447

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRE 115
             + +P  L      L+ S N +         +L EL++S N++  +P+        L  
Sbjct: 291 GLSELPPNL----YYLNASSNEIRSL-CDLPPSLEELNVSNNKLIELPA----LPPRLER 341

Query: 116 LKLSGNPIQKITHEAFINVPKLNLED 141
           L  S N + ++      N+ +L++E 
Sbjct: 342 LIASFNHLAEVPEL-PQNLKQLHVEY 366

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 57  FTTIPEQLDVGTQVLDLSDNFLDRYTFRKLI-NLVELDLSYNQIQFVPSHILDSILELRE 115
            + + + LD     L+L++  L   +  +L  +L  L  S N +  +P    +    L+ 
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLS--SLPELPPHLESLVASCNSLTELP----ELPQSLKS 115

Query: 116 LKLSGNPIQKIT 127
           L +  N ++ ++
Sbjct: 116 LLVDNNNLKALS 127

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 10/73 (13%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDSILEL 113
             +++PE      + L  S N L       + L +L+  + +   +  +P         L
Sbjct: 82  GLSSLPELPP-HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPL-------L 133

Query: 114 RELKLSGNPIQKI 126
             L +S N ++K+
Sbjct: 134 EYLGVSNNQLEKL 146

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 8/69 (11%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLI-NLVELDLSYNQIQFVPSHILDSILELR 114
           +   +PE      + L +  N L    F  +  ++ +L ++  ++        ++  +L 
Sbjct: 387 HLAEVPELPQ-NLKQLHVETNPLR--EFPDIPESVEDLRMNSERVVDPYEFAHETTDKLE 443

Query: 115 ELKLSGNPI 123
           +     +  
Sbjct: 444 DDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLI-NLVELDLSYNQIQFVPSHILDSILELR 114
              T+P+      + L++ DN+L      +L  +L  LD+S N    +          L 
Sbjct: 248 LLKTLPDLPP-SLEALNVRDNYLT--DLPELPQSLTFLDVSENIFSGLSE----LPPNLY 300

Query: 115 ELKLSGNPIQKITHE 129
            L  S N I+ +   
Sbjct: 301 YLNASSNEIRSLCDL 315

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.6 bits (126), Expect = 7e-08
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 69  QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
             L+LS   L +        L  LDLSYN++   PS   D + ++  L L GNP 
Sbjct: 256 NSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.6 bits (126), Expect = 7e-08
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 69  QVLDLSDNFL----DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
           Q LDLS N L       +      L  L+LS+  ++ VP  +      L  L LS N + 
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLD 287

Query: 125 KI 126
           + 
Sbjct: 288 RN 289

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.2 bits (125), Expect = 9e-08
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 69  QVLDLSDNFLDRYT------FRKLINLVELDLSYNQIQFVPSHILDSILE-LRELKLSGN 121
           QVL L +  ++  +          + L  LDLS+N ++             L  L LS  
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

Query: 122 PIQKITHEAFINVPKLNL 139
            ++++       +  L+L
Sbjct: 264 GLKQVPKGLPAKLSVLDL 281

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 8/92 (8%)

Query: 57  FTTIPEQLDVGTQVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQ----FVPSHILDS 109
              + + L  G +VL ++      +     R    L  LDLS N        + +     
Sbjct: 140 LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199

Query: 110 ILELRELKLSGNPIQKITHEAFINVPKL-NLE 140
              L+ L L    ++  +            L+
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDRYTFR-KLINLVELDLSYNQI 99
               +P+ L     VLDLS N LDR     +L  +  L L  N  
Sbjct: 264 GLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 69  QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
             L+   N + +    + I L  LD S N++  +    +  + +L     S NP+ ++  
Sbjct: 194 NRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDV 250

Query: 129 EAFINVPKLNLED 141
                +  L+   
Sbjct: 251 STLSKLTTLHCIQ 263

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 15/73 (20%), Positives = 20/73 (27%), Gaps = 3/73 (4%)

Query: 69  QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
             LD S N L       L  L   D S N +  +    L     L  L      + +I  
Sbjct: 215 TFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSK---LTTLHCIQTDLLEIDL 271

Query: 129 EAFINVPKLNLED 141
                +     E 
Sbjct: 272 THNTQLIYFQAEG 284

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 3/73 (4%)

Query: 69  QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
             L  + N +      +  NL  L    N++  +    +  + +L  L    N + K+  
Sbjct: 67  TKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDV 123

Query: 129 EAFINVPKLNLED 141
                +  LN   
Sbjct: 124 SQNPLLTYLNCAR 136

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 3/71 (4%)

Query: 69  QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
             L    N L       L  L  L+   N++  +          L  L  + N + +I  
Sbjct: 88  TYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPL---LTYLNCARNTLTEIDV 144

Query: 129 EAFINVPKLNL 139
                + +L+ 
Sbjct: 145 SHNTQLTELDC 155

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 69  QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
            +LD     +      +   LV L L+  ++  +    +    +L+ L      IQ  + 
Sbjct: 300 YLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFS- 355

Query: 129 EAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLS 166
            +   +P LN  +F        +  +     +  + +S
Sbjct: 356 -SVGKIPALN-NNFEAEGQTITMPKETLTNNSLTIAVS 391

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 3/73 (4%)

Query: 69  QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
             LD S N +      +   L  L+   N I  +    L+  ++L  L  S N + +I  
Sbjct: 173 TTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEIDV 229

Query: 129 EAFINVPKLNLED 141
                +   +   
Sbjct: 230 TPLTQLTYFDCSV 242

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 2/86 (2%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRE 115
             T +    +     L+ + N L          L ELD   N+        +    +L  
Sbjct: 117 KLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTT 174

Query: 116 LKLSGNPIQKITHEAFINVPKLNLED 141
           L  S N I ++       + +LN + 
Sbjct: 175 LDCSFNKITELDVSQNKLLNRLNCDT 200

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 2/71 (2%)

Query: 71  LDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEA 130
                   D  +  +L  L  LD   + I  +    ++ +  L +L  + N I  +    
Sbjct: 26  AAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTLDLSQ 83

Query: 131 FINVPKLNLED 141
             N+  L  + 
Sbjct: 84  NTNLTYLACDS 94

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 9/72 (12%), Positives = 19/72 (26%), Gaps = 4/72 (5%)

Query: 71  LDLSD-NFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHE 129
                   +          L  LD     I  +    L    +L  L L+   + ++   
Sbjct: 280 FQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELDVS 336

Query: 130 AFINVPKLNLED 141
               +  L+  +
Sbjct: 337 HNTKLKSLSCVN 348

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 15/90 (16%)

Query: 58  TTIPE---QLDVGTQVLDLSDNFLDRYTFRKLI-NLVELDLSYNQIQFVPSHI--LDSIL 111
           T++P    +L    + L +S N L   +   L   L+ L +  NQ+  +P  +  L S  
Sbjct: 234 TSLPVLPSEL----KELMVSGNRLT--SLPMLPSGLLSLSVYRNQLTRLPESLIHLSS-- 285

Query: 112 ELRELKLSGNPIQKITHEAFINVPKLNLED 141
               + L GNP+ + T +A   +       
Sbjct: 286 -ETTVNLEGNPLSERTLQALREITSAPGYS 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.7 bits (121), Expect = 5e-07
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 58  TTIPEQLDVGTQVLDLSDNFLDRYTFRKLI-NLVELDLSYNQIQFVPSHILDSILELREL 116
           TT+P+ L      L + DN L   +   L   L  L++S NQ+  +P      +LEL   
Sbjct: 53  TTLPDCLPAHITTLVIPDNNLT--SLPALPPELRTLEVSGNQLTSLPVLP-PGLLELSIF 109

Query: 117 KLSGNPIQKI 126
                 +  +
Sbjct: 110 SNPLTHLPAL 119

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 7/103 (6%)

Query: 41  CKWK--GGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQ 98
             W+     E    +A     +   L+ G  VL++ ++ L         ++  L +  N 
Sbjct: 13  SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNN 72

Query: 99  IQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLED 141
           +  +P        ELR L++SGN +  +       + +L++  
Sbjct: 73  LTSLP----ALPPELRTLEVSGNQLTSLPVL-PPGLLELSIFS 110

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 9/71 (12%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRE 115
           +   +P  L      L +  N L          L EL +S NQ+  +P        EL +
Sbjct: 115 HLPALPSGL----CKLWIFGNQLTSLP-VLPPGLQELSVSDNQLASLP----ALPSELCK 165

Query: 116 LKLSGNPIQKI 126
           L    N +  +
Sbjct: 166 LWAYNNQLTSL 176

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 17/101 (16%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHI--LD--- 108
           N T++P       + L++S N L         L+ L         +  +PS +  L    
Sbjct: 72  NLTSLPALPP-ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFG 130

Query: 109 --------SILELRELKLSGNPIQKITHEAFINVPKLNLED 141
                       L+EL +S N +  +       + KL   +
Sbjct: 131 NQLTSLPVLPPGLQELSVSDNQLASLPAL-PSELCKLWAYN 170

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 8/72 (11%)

Query: 56  NFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLI-NLVELDLSYNQIQFVPSHILDSILELR 114
              ++P         L   +N L   +   L   L EL +S NQ+  +P        EL 
Sbjct: 152 QLASLPALPS-ELCKLWAYNNQLT--SLPMLPSGLQELSVSDNQLASLP----TLPSELY 204

Query: 115 ELKLSGNPIQKI 126
           +L    N +  +
Sbjct: 205 KLWAYNNRLTSL 216

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 14/75 (18%)

Query: 56  NFTTIPE---QLDVGTQVLDLSDNFLDRYTFRKLI-NLVELDLSYNQIQFVPSHILDSIL 111
              ++P    +L      L   +N L   +   L   L EL +S N++  +P        
Sbjct: 192 QLASLPTLPSEL----YKLWAYNNRLT--SLPALPSGLKELIVSGNRLTSLP----VLPS 241

Query: 112 ELRELKLSGNPIQKI 126
           EL+EL +SGN +  +
Sbjct: 242 ELKELMVSGNRLTSL 256

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 27/90 (30%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFT--TIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVEL 92
           CP+ C C        V C  +  T  ++P    V T  L L+                  
Sbjct: 2   CPAPCSCA----GTLVDCGRRGLTWASLPTAFPVDTTELVLTG----------------- 40

Query: 93  DLSYNQIQFVPSHILDSILELRELKLSGNP 122
               N +  +P  +LD++  LR   L  NP
Sbjct: 41  ----NNLTALPPGLLDALPALRTAHLGANP 66

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 8/96 (8%)

Query: 49  TVLCKAKNFTTIPE----QLDVGTQVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQF 101
            ++       ++P+    +L      L+L+ N L       F KL NL ELDLSYNQ+Q 
Sbjct: 113 ELVLVENQLQSLPDGVFDKL-TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171

Query: 102 VPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
           +P  + D + +L++L+L  N ++ +    F  +  L
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 3/80 (3%)

Query: 48  ETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHI 106
           ET+          P+     T   +L    +    T  +L ++ ++  + + I+ V    
Sbjct: 1   ETITVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-- 58

Query: 107 LDSILELRELKLSGNPIQKI 126
           +  +  +R L L GN +  I
Sbjct: 59  IQYLPNVRYLALGGNKLHDI 78

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 66  VGTQVLDLSDN---FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
                L L+ N    L    F KL NL EL L  NQ+Q +P  + D +  L  L L+ N 
Sbjct: 85  TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144

Query: 123 IQKITHEAF---INVPKLNLED 141
           +Q +    F    N+ +L+L  
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSY 166

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 5/99 (5%)

Query: 48  ETVLCKAKNFTTIPE-QLDVGTQVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSH 105
           + ++    +  ++   Q     + L L  N L      ++L NL  L L+ NQ+Q +P+ 
Sbjct: 44  DQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNG 103

Query: 106 ILDSILELRELKLSGNPIQKITHEAF---INVPKLNLED 141
           + D +  L+EL L  N +Q +    F    N+  LNL  
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 69  QVLDLSDNFLDRY---TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP 122
             LDLS N L       F KL  L +L L  NQ++ VP  + D +  L+ + L  NP
Sbjct: 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B* Length = 120

 Score = 48.8 bits (116), Expect = 1e-07
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 9/93 (9%)

Query: 153 PDVTAEENENVTLSCRATGS----PVPKIKW-----IFKEKIIANISSGLANMNKRQYII 203
           P++   E  +  L C    S     +  + W     +  +++          +       
Sbjct: 15  PEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSR 74

Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
              +  + L I  V   D+ IY CR +     V
Sbjct: 75  FLHDHQAELHIRDVRGHDASIYVCRVEVLGLGV 107

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 21/117 (17%)

Query: 153 PDVTAEENENVTLSCRATGSP-----VPKIKWIFKEK----IIANISSGLANMNKRQY-- 201
             V     ++VTL C           V ++ W    +     + + + G +    ++   
Sbjct: 8   TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEF 67

Query: 202 -IIKTINSLSN--LTIVAVTMSDSGIYTCR-AKNGAGEVFTNISLNVIKVETAVAQP 254
              +    L N  L +  + + D G YTC       G    +I L V+      A+P
Sbjct: 68  VAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL------AKP 118

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 10/98 (10%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
             L L  N +   +    L  L  L    N++  V S  L ++  +  L    N I  + 
Sbjct: 312 TYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDL- 368

Query: 128 HEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTL 165
                N+    +     +      T +       NV++
Sbjct: 369 -TPLANLT--RITQLGLNDQ--AWT-NAPVNYKANVSI 400

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 69  QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
           Q L   +   D      L  L  LD+S N++  +    L  +  L  L  + N I  I  
Sbjct: 159 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDI-- 214

Query: 129 EAFINVPKLN 138
                +  L+
Sbjct: 215 TPLGILTNLD 224

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 69  QVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
             L L+ N L    T   L NL +LDL+ NQI  +    L  + +L ELKL  N I  I 
Sbjct: 224 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI- 280

Query: 128 HEAFINVPKLN 138
                 +  L 
Sbjct: 281 -SPLAGLTALT 290

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
             + +++N +   T    L NL  L L  NQI  +    L ++  L  L+LS N I  I 
Sbjct: 93  VDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI- 149

Query: 128 HEAFINVPKLNLEDFACSPNIRPITP 153
             A   +  L    F     +  + P
Sbjct: 150 -SALSGLTSLQQLSFGN--QVTDLKP 172

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
             ++ S+N L   T  + L  LV++ ++ NQI  +    L ++  L  L L  N I  I 
Sbjct: 71  TQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128

Query: 128 H-EAFINVPKLNLED 141
             +   N+ +L L  
Sbjct: 129 PLKNLTNLNRLELSS 143

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
             L L  N +   +    L  L  L+L+ NQ++ +    + ++  L  L L  N I  I 
Sbjct: 268 TELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI- 324

Query: 128 HEAFINVPKL 137
                ++ KL
Sbjct: 325 -SPVSSLTKL 333

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 56  NFTTIPEQLDVGT-QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILEL 113
           N T    Q D+     L      +        L NL +++ S NQ+  +    L ++ +L
Sbjct: 35  NVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKL 92

Query: 114 RELKLSGNPIQKITH-EAFINVPKLNLED 141
            ++ ++ N I  IT      N+  L L +
Sbjct: 93  VDILMNNNQIADITPLANLTNLTGLTLFN 121

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
           + L  ++N +   T    L NL EL L+ NQ++ + +  L S+  L +L L+ N I  + 
Sbjct: 202 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNL- 258

Query: 128 HEAFINVPKL 137
                 + KL
Sbjct: 259 -APLSGLTKL 267

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 69  QVLDLSDNFL-DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
             L L +N + D    + L NL  L+LS N I  + +  L  +  L++L           
Sbjct: 115 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLKP 172

Query: 128 HEAFINVPKLNLED 141
                 + +L++  
Sbjct: 173 LANLTTLERLDISS 186

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
           + L   +  L       KL  L +L+LS N++      + +    L  L LSGN I+ ++
Sbjct: 45  EFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS 104

Query: 128 H-EAFINVPKL 137
             E    +  L
Sbjct: 105 TIEPLKKLENL 115

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 69  QVLDLSDNFLDR---YTFRKLINLVELDLSYNQIQFVPS-HILDSILELRELKLSGNPIQ 124
           + L+LSDN +         K  NL  L+LS N+I+ + +   L  +  L+ L L    + 
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

Query: 125 KITH 128
            +  
Sbjct: 127 NLND 130

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 11/80 (13%)

Query: 55  KNFTTIPEQLDVGT----QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHI-- 106
           +      + L+  T      L+L    L +      +L +L  + +    +  +P  +  
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQ 125

Query: 107 LDSILELRELKLSGNPIQKI 126
                 L  L L+ NP++ +
Sbjct: 126 FAG---LETLTLARNPLRAL 142

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 56  NFTTIPEQLDVGT----QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHI--L 107
                P+Q         Q + +    L     T ++   L  L L+ N ++ +P+ I  L
Sbjct: 92  PLPQFPDQA--FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASL 149

Query: 108 DSILELRELKLSGNP 122
           +    LREL +   P
Sbjct: 150 NR---LRELSIRACP 161

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 23/89 (25%)

Query: 56  NFTTIPEQLDVGT----QVLDLSD------------NFLDRYTFRKLINLVELDLSYNQI 99
               +P  +   +    + L +              +       + L+NL  L L +  I
Sbjct: 138 PLRALPASI--ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195

Query: 100 QFVPSHI--LDSILELRELKLSGNPIQKI 126
           + +P+ I  L +   L+ LK+  +P+  +
Sbjct: 196 RSLPASIANLQN---LKSLKIRNSPLSAL 221

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 7/57 (12%)

Query: 69  QVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHI--LDSILELRELKLSGN 121
           Q L L    +     +   L NL  L +  + +  +   I  L     L EL L G 
Sbjct: 186 QSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK---LEELDLRGC 239

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 49.5 bits (117), Expect = 3e-07
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 13/101 (12%)

Query: 136 KLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLAN 195
           K +  D          TP   +     V L+C     P  +I W   +K I         
Sbjct: 104 KKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQ--YPGSEILWQHNDKNI--------G 153

Query: 196 MNKRQYIIKTINSLSNLTIVAVT-MSDSGIYTCRAKNGAGE 235
            ++    I +     +L++   + +  SG Y C  +    E
Sbjct: 154 GDEDDKNIGSDED--HLSLKEFSELEQSGYYVCYPRGSKPE 192

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 42.6 bits (99), Expect = 6e-05
 Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 19/79 (24%)

Query: 157 AEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVA 216
            +E+ +V L+C    +    I W    K+I  ++                       + +
Sbjct: 15  YQEDGSVLLTC---DAEAKNITWFKDGKMIGFLTE----------------DKKKWNLGS 55

Query: 217 VTMSDSGIYTCRAKNGAGE 235
                 G+Y C+      +
Sbjct: 56  NAKDPRGMYQCKGSQNKSK 74

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 49.1 bits (116), Expect = 4e-07
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 15/98 (15%)

Query: 148 IRPITPDVTAEENENVTLSCRATGS-PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI 206
           + P  P V      +  L+CR   +     ++W   +  +  + S               
Sbjct: 10  VEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGR----------- 58

Query: 207 NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
              S LT+   ++S +G   C    G       + L V
Sbjct: 59  ---SVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus} Length = 115

 Score = 46.9 bits (111), Expect = 6e-07
 Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 12/105 (11%)

Query: 152 TPDVTAEENENVTLSCRATGSP--VPKIKW--------IFKEKIIANISSGLANMNKRQY 201
              V       VTL C  +     +  + W             +I      + +    +Y
Sbjct: 4   HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRY 63

Query: 202 IIKTINSLSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
            +K   S  N  LTI    + D G Y C  +      F +  L V
Sbjct: 64  QLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEV 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
           + L L +  L   +   KL  L +L+LS N+I      + + +  L  L LSGN ++ I+
Sbjct: 52  EFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIS 111

Query: 128 H-EAFINVPKL 137
             E    +  L
Sbjct: 112 TLEPLKKLECL 122

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 69  QVLDLSDNFLDR---YTFRKLINLVELDLSYNQIQFVPS-HILDSILELRELKLSGNPIQ 124
           + L+LS+N +         KL NL  L+LS N+++ + +   L  +  L+ L L    + 
Sbjct: 74  KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

Query: 125 KITH---EAFINVPKLNLEDF 142
            +       F  +P+L   D 
Sbjct: 134 NLNDYRESVFKLLPQLTYLDG 154

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
           Q  +  ++ +      +   NL EL LS+NQI  +    L  + +L EL ++ N ++ + 
Sbjct: 44  QNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLN 101

Query: 128 HEAFINVPKLNLED 141
                 + +L L++
Sbjct: 102 GIPSACLSRLFLDN 115

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
           ++L + +N L        L  L  LDL  N+I       L  + ++  + L+G       
Sbjct: 131 EILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEP 188

Query: 128 HEAFINVPKLNLEDFACSPNIRPITPD 154
            +    +   N       P+ R I+P 
Sbjct: 189 VKYQPELYITNTVK---DPDGRWISPY 212

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 69  QVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
           + L ++ N L          L  L L  N+++   S  L  +  L  L +  N ++ I  
Sbjct: 88  EELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIVM 145

Query: 129 -EAFINVPKLNLED 141
                 +  L+L  
Sbjct: 146 LGFLSKLEVLDLHG 159

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 69  QVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
              +L    +    + ++L  +   +   + IQ +    +     L+EL LS N I  ++
Sbjct: 22  VKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLS 79

Query: 128 H-EAFINVPKLNLED 141
             +    + +L++  
Sbjct: 80  PLKDLTKLEELSVNR 94

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 85  KLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH-EAFINVPKLNL 139
            L N V+ +L    +  + S     +  ++      + IQ +   + F N+ +L+L
Sbjct: 17  GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHL 70

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 3/71 (4%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
             L L DN +        L  L  L LS N I  + +  L  +  L  L+L         
Sbjct: 159 DTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP 216

Query: 128 HEAFINVPKLN 138
                N+   N
Sbjct: 217 INHQSNLVVPN 227

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
             L L+ N L        L NL  L L  N+++ + S  L  + +L+ L L  N I  I 
Sbjct: 71  TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDI- 127

Query: 128 HEAFINVPKLN 138
               +++P+L 
Sbjct: 128 -NGLVHLPQLE 137

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 12/70 (17%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
             +  +++ +      + L N+ +L L+ N++  +    L ++  L  L L  N ++ + 
Sbjct: 49  DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL- 105

Query: 128 HEAFINVPKL 137
             +  ++ KL
Sbjct: 106 -SSLKDLKKL 114

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
           + L L  N +        L  L  L L  N+I  +    L  + +L  L L  N I  I 
Sbjct: 115 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDI- 171

Query: 128 HEAFINVPKLN 138
                 + KL 
Sbjct: 172 -VPLAGLTKLQ 181

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 69  QVLDLSDNFL-DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
              +L    + D  T  +L ++ ++  + + I+ V    +  +  + +L L+GN +  I 
Sbjct: 27  IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIK 84

Query: 128 H-EAFINVPKLNL 139
                 N+  L L
Sbjct: 85  PLANLKNLGWLFL 97

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 11/102 (10%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN---PIQ 124
           Q L LS N +        L NL  L+L   +    P +   +++    +K +       +
Sbjct: 181 QNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE 240

Query: 125 KITHEAFINVPKLNLEDFACSPNIRPITPDVTAEENENVTLS 166
            I+ +     P +         ++   T +V+    + VT+ 
Sbjct: 241 IISDDGDYEKPNVKW-------HLPEFTNEVSFIFYQPVTIG 275

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* Length = 109

 Score = 46.5 bits (110), Expect = 8e-07
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 15/105 (14%)

Query: 155 VTAEENENVTLSCRATGSP---VPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS- 210
              E  +N  L C  T      +  + W       +  ++ L   ++R    +  +    
Sbjct: 4   YKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQL 63

Query: 211 ---------NLTIVAVTMSDSGIYTCRAKNG--AGEVFTNISLNV 244
                    +L I  VT+ D G Y CR +      +    + L++
Sbjct: 64  KGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDI 108

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
             +D SDN + +   F  L  L  L ++ N+I  +   +  ++ +L EL L+ N + ++ 
Sbjct: 45  DAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 104

Query: 128 H-EAFINVPKL 137
             +   ++  L
Sbjct: 105 DLDPLASLKSL 115

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 15/100 (15%)

Query: 69  QVLDLSDNF---LDRYTFRKLINLVELDLSYNQIQFVPS-HILDSILELRELKLSGNPIQ 124
           + L +++N    +     + L +L EL L+ N +  +     L S+  L  L +  NP+ 
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

Query: 125 KITH---EAFINVPKLNLEDFACSPNIRPITPD--VTAEE 159
              H        VP++ + DF      + +       AE+
Sbjct: 127 NKKHYRLYVIYKVPQVRVLDF------QKVKLKERQEAEK 160

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 11/74 (14%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 70  VLDLSDNFL-DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH 128
           ++ L+   +     +   +   ELDL   +I  +  ++  ++ +   +  S N I+K+  
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDG 59

Query: 129 -EAFINVPKLNLED 141
                 +  L + +
Sbjct: 60  FPLLRRLKTLLVNN 73

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 69  QVLDLSDNFLDRYT--FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI 126
           + LDL    +         L     +D S N+I+ +       +  L+ L ++ N I +I
Sbjct: 22  RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRI 79

Query: 127 THEAFINVPKLN 138
                  +P L 
Sbjct: 80  GEGLDQALPDLT 91

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 23/98 (23%), Positives = 32/98 (32%), Gaps = 4/98 (4%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
             L L DN +        L  L  L LS N I  + +  L  +  L  L+L         
Sbjct: 156 DTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP 213

Query: 128 HEAFINVPKLN-LEDFACSPNIRPITPDVTAEENENVT 164
                N+   N +++   S     I  D    E  NV 
Sbjct: 214 INHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK 251

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
             L L+ N L        L NL  L L  N+I+ + S  L  + +L+ L L  N I  I 
Sbjct: 68  TKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDIN 125

Query: 128 H-EAFINVPKLNLED 141
                  +  L L +
Sbjct: 126 GLVHLPQLESLYLGN 140

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
           + L L +N +   T   +L  L  L L  NQI  +    L  + +L+ L LS N I  + 
Sbjct: 134 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL- 190

Query: 128 HEAFINVPKLN 138
             A   +  L+
Sbjct: 191 -RALAGLKNLD 200

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 14/75 (18%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
             +  +++ +      + L N+ +L L+ N++  +    L ++  L  L L  N I+ ++
Sbjct: 46  DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS 103

Query: 128 H-EAFINVPKLNLED 141
             +    +  L+LE 
Sbjct: 104 SLKDLKKLKSLSLEH 118

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.9 bits (103), Expect = 6e-05
 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
           + L L  N +        L  L  L L  N+I  +    L  + +L  L L  N I  I 
Sbjct: 112 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDI- 168

Query: 128 HEAFINVPKLN 138
                 + KL 
Sbjct: 169 -VPLAGLTKLQ 178

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.6 bits (102), Expect = 8e-05
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 69  QVLDLSDNFL-DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
              +L    + D  T  +L ++ ++  + + I+ V    +  +  + +L L+GN +  I 
Sbjct: 24  IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIK 81

Query: 128 H-EAFINVPKLNL 139
                 N+  L L
Sbjct: 82  PLTNLKNLGWLFL 94

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 40.5 bits (94), Expect = 7e-04
 Identities = 10/79 (12%), Positives = 28/79 (35%), Gaps = 10/79 (12%)

Query: 62  EQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN 121
           E + V T +  +                ++ +L    +    +   + +  + ++  + +
Sbjct: 3   ETITVSTPIKQIFP-------DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS 53

Query: 122 PIQKITH-EAFINVPKLNL 139
            I+ +   +   NV KL L
Sbjct: 54  DIKSVQGIQYLPNVTKLFL 72

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 1/86 (1%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
           + L +++     Y     L NL  L +    +       L  +  L  L +S +      
Sbjct: 69  KDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 128 HEAFINVPKLNLEDFACSPNIRPITP 153
                 +PK+N  D + +  I  I P
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 69  QVLDLSDNFL--DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI 126
             +DLS N    D    + L  L  L++ ++ +       ++   +L +L      I   
Sbjct: 139 NSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPS-HILDSILELRELKLSGNPIQKI 126
           + L +S N +   +   KL+NL  L +S N+I        L ++ +L +L L+GNP+   
Sbjct: 96  EELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155

Query: 127 THE 129
             E
Sbjct: 156 YKE 158

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 6/90 (6%)

Query: 52  CKAKNFTTIPEQLDVGT--QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILD 108
                   +   L      + L LS N +++ +    + NL  L L  N I+ +  ++  
Sbjct: 32  GMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKI-ENLDA 90

Query: 109 SILELRELKLSGNPIQKITHEAFINVPKLN 138
               L EL +S N I  +       +  L 
Sbjct: 91  VADTLEELWISYNQIASL--SGIEKLVNLR 118

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A Length = 110

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 6/98 (6%)

Query: 153 PDVTAEENENVTLSCRAT-GSPVPKIKWIFKE--KIIANISSGLANMNKRQYI--IKTIN 207
           PD+ A    NVTL        P  +I W+  +  KI+    +    + + ++   +    
Sbjct: 11  PDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEE 70

Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
           +   L I  V   D G Y  R           I+L V 
Sbjct: 71  NNGALHISNVRKEDKGTYYMRVLRETENELK-ITLEVF 107

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 46.4 bits (109), Expect = 4e-06
 Identities = 19/101 (18%), Positives = 24/101 (23%), Gaps = 21/101 (20%)

Query: 150 PITPDVTAEENENVTLSCRAT----GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
            I      E      LSC         P     W                 N    +   
Sbjct: 128 DIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSW---------------TGNALSPLDPE 172

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN--ISLNV 244
               S LT+           TC+ K    +V T   + LNV
Sbjct: 173 TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 42.1 bits (98), Expect = 9e-05
 Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 21/137 (15%)

Query: 153 PDVTAEENENVTLSCRAT-------GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
             VT +E   V + C  +        SP   + W    +I         N   R+   +T
Sbjct: 8   KSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPET 67

Query: 206 INSLS----------NLTIVAVTMSDSGIYTCRAKNGAGEVFT----NISLNVIKVETAV 251
                          +L+I    M D+G Y  R + G    ++     ++L V  +    
Sbjct: 68  QGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKP 127

Query: 252 AQPDPVYLVASLTTVVT 268
                  L +   T ++
Sbjct: 128 DIHFLEPLESGRPTRLS 144

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 46.8 bits (110), Expect = 6e-06
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 16/92 (17%)

Query: 154 DVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
            +T+   ++VTL+C          + W+ ++    +  S            +       L
Sbjct: 15  VLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPS------------RWAGMGRRL 62

Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
            + +V + DSG Y+C     AG     + L V
Sbjct: 63  LLRSVQLHDSGNYSCYR---AGRPAGTVHLLV 91

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 14/103 (13%)

Query: 56  NFT-TIPEQLDVGT----QVLDLSDNFLD----RYTFRKLINLVELDLSYNQIQ-FVPSH 105
           +F   +P     G+    + L LS N         T  K+  L  LDLS+N+    +P  
Sbjct: 305 HFYGAVPPFF--GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362

Query: 106 ILDSILELRELKLSGNPIQ-KITHEAFINVPKLNLEDFACSPN 147
           + +    L  L LS N     I        PK  L++     N
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPN-LCQNPKNTLQELYLQNN 404

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 6/59 (10%)

Query: 69  QVLDLSDNFL-----DRYTFRKLINLVELDLSYNQIQFV-PSHILDSILELRELKLSGN 121
             LDLS N L        +      L  L++S N + F         +  L  L LS N
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 12/78 (15%)

Query: 56  NFT-TIPEQLDVGT----QVLDLSDNFLDRY----TFRKLINLVELDLSYNQIQ-FVPSH 105
           + +  +     +G+    + L++S N LD         KL +L  LDLS N I       
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170

Query: 106 I--LDSILELRELKLSGN 121
               D   EL+ L +SGN
Sbjct: 171 WVLSDGCGELKHLAISGN 188

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 26/122 (21%)

Query: 37  STCECKWKGGKETVLCK--------------AKNFTTIPEQLDVGT--QVLDLSDNFLDR 80
               C + G    V C+                 F+ +   L   T  + L LS++ ++ 
Sbjct: 37  KNP-CTFDG----VTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING 91

Query: 81  Y--TFRKLINLVELDLSYNQI--QFVPSHILDSILELRELKLSGNPIQ-KITHEAFINVP 135
               F+   +L  LDLS N +         L S   L+ L +S N +         + + 
Sbjct: 92  SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151

Query: 136 KL 137
            L
Sbjct: 152 SL 153

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 25/93 (26%), Positives = 33/93 (35%), Gaps = 18/93 (19%)

Query: 56  NFT-TIPE-----QLDVGTQVLDLSDNFLDR---YTFRKLINLVELDLSYNQIQ-FVPSH 105
           NF+  IP       L    Q LD+S N L             L  L++S NQ    +P  
Sbjct: 211 NFSTGIPFLGDCSAL----QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266

Query: 106 ILDSILELRELKLSGNPIQ-KITHEAFINVPKL 137
            L S   L+ L L+ N    +I          L
Sbjct: 267 PLKS---LQYLSLAENKFTGEIPDFLSGACDTL 296

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 7/91 (7%)

Query: 56  NFT-TIPEQLDVGT--QVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQ-FVPSHILD 108
             T  IP+ +       +L LS+N              +L+ LDL+ N     +P+ +  
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560

Query: 109 SILELRELKLSGNPIQKITHEAFINVPKLNL 139
              ++    ++G     I ++          
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 11/71 (15%)

Query: 59  TIPEQLD--VGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILEL 113
              EQL+        +++          TF    +++ LD+SYN +     +I   I  +
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS---GYIPKEIGSM 655

Query: 114 RELK---LSGN 121
             L    L  N
Sbjct: 656 PYLFILNLGHN 666

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.3 bits (95), Expect = 8e-04
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 56  NFT-TIPEQLDVGT-----QVLDLSDNFLD-RYTFRKLINLVELDLSYNQIQ-FVPSHIL 107
           + +        +       + L +S N +       + +NL  LD+S N     +P   L
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--L 219

Query: 108 DSILELRELKLSGN 121
                L+ L +SGN
Sbjct: 220 GDCSALQHLDISGN 233

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 43.8 bits (103), Expect = 6e-06
 Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 10/104 (9%)

Query: 145 SPNIRPITP--DVTAEENENVTLSCRATGSPVPKIKWIFK--EKIIANISSGLANMNKRQ 200
           S   R +    DV   + E+   S     S + +  W F   E++ +N   G       +
Sbjct: 6   SGTARLVAGLEDVQVYDGEDAVFSLDL--STIIQGTW-FLNGEELKSNEPEGQVEPGALR 62

Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           Y I+       L + AV   DSG            V  + +L +
Sbjct: 63  YRIEQKGLQHRLILHAVKHQDSGALV---GFSCPGVQDSAALTI 103

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S* Length = 119

 Score = 43.8 bits (103), Expect = 7e-06
 Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 12/108 (11%)

Query: 153 PDVTAEENENVTLSCR---ATGSPVPKIKWIFK-----EKIIANISSGLANMNK----RQ 200
             VT     +V + C      G     +KW+ +       I    S+G          R 
Sbjct: 9   ESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRL 68

Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE 248
            +   +    +L I  + M D   YTC       +    I   +I++ 
Sbjct: 69  KVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELR 116

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
             L      +      + L NL+ L+L  NQI  +    L ++ ++ EL+LSGNP++ + 
Sbjct: 44  TTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV- 100

Query: 128 HEAFINVPKL 137
             A   +  +
Sbjct: 101 -SAIAGLQSI 109

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
             L+LS N L   +    L ++  LDL+  QI  V    L  +  L+ L L  N I  I 
Sbjct: 88  TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNI- 144

Query: 128 HEAFINVPKLN 138
                 +  L 
Sbjct: 145 -SPLAGLTNLQ 154

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 33/160 (20%), Positives = 55/160 (34%), Gaps = 27/160 (16%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
           QVL L  N +   +    L NL  L +   Q+  +    L ++ +L  LK   N I  I 
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDI- 188

Query: 128 HEAFINVPKLNLEDFACSPN-IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKII 186
                ++P  NL +     N I  ++P         VTL+       +      +   ++
Sbjct: 189 -SPLASLP--NLIEVHLKNNQISDVSPLANTSNLFIVTLT----NQTITNQPVFYNNNLV 241

Query: 187 ANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYT 226
                          +   +   S   I   T+SD+G Y 
Sbjct: 242 ---------------VPNVVKGPSGAPIAPATISDNGTYA 266

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 12/88 (13%), Positives = 29/88 (32%), Gaps = 10/88 (11%)

Query: 69  QVLDLSDNFL-DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
             +    + + D  T   L  +  L      +  +    +  +  L  L+L  N I  + 
Sbjct: 22  IKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLA 79

Query: 128 HEAFINVPKL-NLEDFACSPN-IRPITP 153
                 +  L  + +   S N ++ ++ 
Sbjct: 80  -----PLKNLTKITELELSGNPLKNVSA 102

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N Length = 113

 Score = 43.5 bits (103), Expect = 9e-06
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 17/91 (18%)

Query: 153 PDVTAEENENVTLSCRATGSPVPK--IKWIFK-------EKIIANISSGLANMNKRQYII 203
             VT E  E++T++C    +        W ++       E+ I+     +  +N      
Sbjct: 8   RSVTKETGESLTINCVLRDASYALGSTCW-YRKKSGEGNEESISKGGRYVETVNSGS--- 63

Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKNGAG 234
               S S L I  +T+ D G Y C      G
Sbjct: 64  ---KSFS-LRINDLTVEDGGTYRCGLGVAGG 90

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} Length = 128

 Score = 43.8 bits (103), Expect = 9e-06
 Identities = 21/119 (17%), Positives = 34/119 (28%), Gaps = 27/119 (22%)

Query: 153 PDVTAEENENVTLSCR----ATGSPVPKIKWIFKEK-------IIANISSGLANMNKRQY 201
           P+V  +    V L C       G  +  + W   +           +   G +  + +  
Sbjct: 10  PEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPG 69

Query: 202 -------------IIKTINSLSN--LTIVAVTMSDSGIYTCRAKN-GAGEVFTNISLNV 244
                           T   L +  L +  +T+ D G YTC       G V     L V
Sbjct: 70  SERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128

>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1 Length = 117

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 16/105 (15%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 155 VTAEENENVTLSCRATGSPVPK--IKWIFKE------KIIANISSGLANMNKRQYIIK-- 204
           V + E  +V+++C    + V +   K+  ++        + +    +++    +  +   
Sbjct: 10  VNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNF 69

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVET 249
             N    + I  ++  DSG Y C     +  +  ++SL V++   
Sbjct: 70  PENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVLEHHH 114

>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC, H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A {Mus musculus} SCOP: b.1.1.1 Length = 142

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 15/87 (17%)

Query: 153 PDVTAEENENVTLSCR-ATGSPVPKIKW---------IFKEKIIANISSGLANMNKRQYI 202
             ++  E   VT+ C   T      + W         +F   +I   S    N     Y 
Sbjct: 8   TSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVF---LIRQDSYKKENATVGHYS 64

Query: 203 IK--TINSLSNLTIVAVTMSDSGIYTC 227
           +      S   L I A  + DS +Y C
Sbjct: 65  LNFQKPKSSIGLIITATQIEDSAVYFC 91

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens} Length = 124

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 14/99 (14%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKE------KIIANISSGLANMNKRQYII---KT 205
           V   E  ++T+ C         +KW  +       KI+   S     + + +  I   + 
Sbjct: 12  VNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQK 71

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
             + + +T+  +  +D+  Y C  +    ++   + + +
Sbjct: 72  NRTFT-VTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTI 109

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A* Length = 116

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 15/87 (17%)

Query: 153 PDVTAEENENVTLSCR-ATGSPVPKIKW---------IFKEKIIANISSGLANMNKRQYI 202
             ++  E   VT+ C   T      + W         +F   +I   S    N     Y 
Sbjct: 8   TSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVF---LIRQDSYKKENATVGHYS 64

Query: 203 IK--TINSLSNLTIVAVTMSDSGIYTC 227
           +      S   L I A  + DS +Y C
Sbjct: 65  LNFQKPKSSIGLIITATQIEDSAVYFC 91

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X* Length = 116

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 15/109 (13%)

Query: 155 VTAEENENVTLSCR--ATGSPVPKIKWI--------FKEKIIANISSGLANMNKRQYIIK 204
           +     + VTL C   +       + W            +++    + + +    +Y + 
Sbjct: 6   IIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLL 65

Query: 205 TINSLSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV-IKVETA 250
                    LTI      DSG+Y CR +      F ++  NV +++  A
Sbjct: 66  GKVQFGEVSLTISNTNRGDSGVYCCRIEVPG--WFNDVKKNVRLELRRA 112

>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 Length = 185

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 26/121 (21%), Positives = 37/121 (30%), Gaps = 25/121 (20%)

Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKR--QYII 203
             +T  E E   L+C    S      W + +        +IA         + R   +  
Sbjct: 8   QSLTVWEGETAILNCSYEDSTFDYFPW-YHQFPGESPALLIAIRPVSNKKEDGRFTIFFN 66

Query: 204 KTINSLSNLTIVAVTMSDSGIYTCRAKN-----GAGEVFTNISLNVIKVETAVAQPDP-V 257
           K     S L I      DS  Y C A +     G G            V+  +  P+P V
Sbjct: 67  KREKKFS-LHIADSQPGDSATYFCAASDNRIFFGDGTQLV--------VKPNIQNPEPAV 117

Query: 258 Y 258
           Y
Sbjct: 118 Y 118

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} Length = 259

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 14/88 (15%)

Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNK------RQY 201
             V  +   +  ++C         I W   +     + +    S  +++         +Y
Sbjct: 10  KSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKY 69

Query: 202 II--KTINSLSNLTIVAVTMSDSGIYTC 227
                T  +L  + +  +  +DSG+Y C
Sbjct: 70  DTYGSTRKNLR-MILRNLIENDSGVYYC 96

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} Length = 259

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 10/84 (11%)

Query: 153 PDVTAEENENVTLSCRATGS-PVPKIKWIFKE-----KIIANISSGLANMNKRQYII--- 203
             V+    + VTL+C    S     I W  +        +    S   N    +Y +   
Sbjct: 144 SSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFK 203

Query: 204 KTINSLSNLTIVAVTMSDSGIYTC 227
           K   S++ LTI A+ + DS  Y C
Sbjct: 204 KAAKSVA-LTISALQLEDSAKYFC 226

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1 Length = 124

 Score = 41.9 bits (98), Expect = 4e-05
 Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 19/112 (16%)

Query: 153 PDVTAEENENVTLSCRATGSPVPK----IKWIFKEKIIANISSGLANMNKRQYI------ 202
            +V       VTL C    S          W ++ +   +  S       + YI      
Sbjct: 7   REVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTF 66

Query: 203 ---IKTINSLSN----LTIVAVTMSDSGIYTCRAKN--GAGEVFTNISLNVI 245
              I+ +   S     + I  +  SD+G +TC  KN        + ++L V 
Sbjct: 67  KERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A Length = 203

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 7/89 (7%)

Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTIN 207
             ++  E EN+ L+C  T S +  ++W  ++       +  I S        +       
Sbjct: 8   AALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDK 67

Query: 208 S--LSNLTIVAVTMSDSGIYTCRAKNGAG 234
           S   S L I A    DS  Y C  +  +G
Sbjct: 68  SSGRSTLYIAASQPGDSATYLCAVRPTSG 96

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus} Length = 113

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 10/105 (9%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKE------KIIANISSGLANMNKRQYII---K 204
           +V+ +E  ++T+ CR T       K+  +       K +    +    + K +  I   +
Sbjct: 10  EVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQ 69

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVET 249
                + +T+  + MSD+GIY C    G  +    +++N+  V T
Sbjct: 70  RDFIFT-VTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIGPVPT 113

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 16/105 (15%)

Query: 155 VTAEENENVTLSCR---ATGSPVPKIKWIFKEK-----IIANISSGLANMNKRQYIIKTI 206
           + A   +   L CR      +   ++ W ++        +             +Y  +T 
Sbjct: 16  IRALVGDEAELPCRISPGKNATGMEVGW-YRSPFSRVVHLYRNGKDQDAEQAPEYRGRTE 74

Query: 207 NSLSN-------LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
               +       L I  V  SD G YTC  ++ + +    + L V
Sbjct: 75  LLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 119

>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule, IGV, immunoglobulin variable, IGC, immunoglobulin constant, signaling protein; 2.04A {Homo sapiens} Length = 111

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 17/100 (17%), Positives = 25/100 (25%), Gaps = 10/100 (10%)

Query: 155 VTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYI-------IKTI 206
           V     E+VT          V  I W  K  +                        I  +
Sbjct: 9   VNGILGESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHAL 68

Query: 207 NSLSNLTIVAVTMSDSGIYTCR--AKNGAGEVFTNISLNV 244
               NL I  + M D+G Y      +          +L +
Sbjct: 69  GPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 11/84 (13%)

Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
           P     +   VTL C+  G    +   +++E                +   + +      
Sbjct: 12  PGSVITQGSPVTLRCQ--GGQETQEYRLYRE--------KKTAPWITRIPQELVKK-GQF 60

Query: 213 TIVAVTMSDSGIYTCRAKNGAGEV 236
            I ++T   +G Y C   +     
Sbjct: 61  PIPSITWEHTGRYRCYYGSDTAGR 84

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 12/102 (11%)

Query: 155 VTAEENENVTLSCRATGSP--VPKIKWIFKE-----KIIANISSGLANMNKRQYII---K 204
           + +   + +T+ C+   +     K  W  +        +   S         ++ I    
Sbjct: 20  LQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDP 79

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRA-KNGAGEVFTNISLNVI 245
                + +T+  +   DSG Y CR  +     V  ++   ++
Sbjct: 80  DAGFFT-VTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLV 120

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 11/82 (13%)

Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
           P     + + VT+ C+  G+       +  E        G      R    + IN     
Sbjct: 11  PHFMVPKEKQVTICCQ--GNYGAVEYQLHFE--------GSLFAVDRPKPPERINK-VKF 59

Query: 213 TIVAVTMSDSGIYTCRAKNGAG 234
            I  +    +G Y+C  + G  
Sbjct: 60  YIPDMNSRMAGQYSCIYRVGEL 81

>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A 3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A* 2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B 3e3q_D Length = 226

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 15/116 (12%)

Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKRQYII-- 203
             VT  E  ++ L C+ + S  P + W + +        ++   S          +    
Sbjct: 17  ARVTVSEGASLQLRCKYSYSATPYLFW-YVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEF 75

Query: 204 -KTINSLSNLTIVAVTMSDSGIYTC--RAKNGAGEVFTNISLNVIKVETAVAQPDP 256
            K+ +S   L   +V  SDS +Y C   AK    ++       +  V   +  PDP
Sbjct: 76  SKSDSSFH-LRKASVHWSDSAVYFCAVSAKGTGSKLSFGKGAKLT-VSPNIQNPDP 129

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 21/129 (16%), Positives = 41/129 (31%), Gaps = 14/129 (10%)

Query: 153 PDVTAEENENVTLSCRATGSPVP-----KIKWIFK-----EKIIANISSGLANMNKRQYI 202
                  N+NVT+ C    S         I W +K     +++      G      R   
Sbjct: 11  GTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGA 70

Query: 203 IKTINSLSN----LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVY 258
           I +   L +    L +  + + ++G Y C       +    + L V+    +    D V 
Sbjct: 71  IVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVG 130

Query: 259 LVASLTTVV 267
           +  +    +
Sbjct: 131 MKENEDKYM 139

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 11/82 (13%)

Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
           P     + + VT+ C+  G+       +  E        G      R    + IN     
Sbjct: 14  PHFMVPKEKQVTICCQ--GNYGAVEYQLHFE--------GSLFAVDRPKPPERINK-VKF 62

Query: 213 TIVAVTMSDSGIYTCRAKNGAG 234
            I  +    +G Y+C  + G  
Sbjct: 63  YIPDMNSRMAGQYSCIYRVGEL 84

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 13/116 (11%)

Query: 140 EDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKR 199
           +   C    +        +      L C    S + ++ W F+  ++   S         
Sbjct: 528 DASVCPDKSKGSYRQHFFKHGGTAELKCSQK-SNLARVFWKFQNGVLKAESPK------- 579

Query: 200 QYIIKTINSLSNLTIVAVTMSDSGIYTCRAK-NGAGEVFTNISLNVIKVETAVAQP 254
            Y +       NL I  ++  DSG+Y C ++     +    +    +     V +P
Sbjct: 580 -YGLMGRK---NLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKP 631

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 9/74 (12%)

Query: 161 ENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMS 220
            +V + C+        +  +   K      +       R+             I  +  +
Sbjct: 24  GSVKIQCQ--AIREAYLTQLMIIK------NSTYREIGRRLKFWNETD-PEFVIDHMDAN 74

Query: 221 DSGIYTCRAKNGAG 234
            +G Y C+ + G  
Sbjct: 75  KAGRYQCQYRIGHY 88

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 16/124 (12%)

Query: 151 ITPD--VTAEENENVTLSCRATGSPVPK---IKWIFK--EKIIANISSG-------LANM 196
           + P   + A   E+  L C    +   +   +KW+     +++   + G        A  
Sbjct: 8   LGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPY 67

Query: 197 NKRQYIIKTINSLSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQP 254
             R  I++   +     L I  VT SDSG Y C  ++G       + L V  + + +   
Sbjct: 68  RGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVD 127

Query: 255 DPVY 258
              Y
Sbjct: 128 VKGY 131

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 10/93 (10%)

Query: 145 SPNIRPITPDVTAEENENVTLSCRATG-SPVPKIKWIFKEKIIANISSGLANMNKRQYII 203
           +     +  DV   ++  + L CR+TG  P P+I+W          + G         ++
Sbjct: 118 AALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWS--------NNKGENIPTVEAPVV 169

Query: 204 KTINSLSNLT-IVAVTMSDSGIYTCRAKNGAGE 235
                L  +   V +  S     +C  ++    
Sbjct: 170 ADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLG 202

>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens} Length = 199

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 11/94 (11%)

Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKRQYIIKT 205
             +  +E ++   +C    S    + W ++ +       +     +G      R      
Sbjct: 8   QSLHVQEGDSTNFTCSFPSSNFYALHW-YRWETAKSPEALFVMTLNGDEKKKGR-ISATL 65

Query: 206 INS--LSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
                 S L I      DS  Y C    G    F
Sbjct: 66  NTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYF 99

>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A* Length = 194

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 11/116 (9%)

Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKR-QYIIK 204
             VT  E   V L+C    +  P + W + +        ++ + +      ++     + 
Sbjct: 9   GLVTLTEGLPVMLNCTYQSTYSPFLFW-YVQHLNEAPKLLLKSFTDNKRPEHQGFHATLH 67

Query: 205 TINSLSNLTIVAVTMSDSGIYTC--RAKNGAGEVFTNISLNVIKVETAVAQPDPVY 258
             +S  +L   +  +SDS +Y C     + +           + V   +  P+P  
Sbjct: 68  KSSSSFHLQKSSAQLSDSALYYCALFLASSSFSKLVFGQGTSLSVVPNIQNPEPAV 123

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 28/133 (21%), Positives = 44/133 (33%), Gaps = 9/133 (6%)

Query: 153 PDVTAEENENVTLSCRATGS-PVPKIKWIF-----KEKIIANISSGLANMNKRQYIIKTI 206
             V+    E+  L C  T   PV  I+W       +E I          +       K  
Sbjct: 11  KSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRE 70

Query: 207 NSLSNLTIVAVTMSDSGIYTCRA--KNGAGEVFTNISLNVIKVETAVAQPDPVYLVASLT 264
           N   +++I  +T +D+G Y C    K      F + +   + V    + P      A  T
Sbjct: 71  NMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARAT 130

Query: 265 TVVTIILTACFVV 277
              T+  T C   
Sbjct: 131 PQHTVSFT-CESH 142

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus} Length = 105

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 21/115 (18%), Positives = 34/115 (29%), Gaps = 27/115 (23%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P++  + P       + VTL C            ++          G    +K +   + 
Sbjct: 6   PSLS-LHPSQGVSLGDTVTLRCHLPRMAA--WVQLWLN--------GTLRFDKEKDKEQD 54

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVYLV 260
               S        + D+G Y CR +       +N S             DPV LV
Sbjct: 55  AAEFS---FAVTNLEDAGTYQCRYQVSEPLWTSNQS-------------DPVELV 93

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 11/82 (13%)

Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
           P        +VT+ C+  G+   +   + KE               RQ  ++  N  +  
Sbjct: 12  PGSVISWGNSVTIWCQ--GTLEAREYRLDKE--------ESPAPWDRQNPLEPKNK-ARF 60

Query: 213 TIVAVTMSDSGIYTCRAKNGAG 234
           +I ++T   +G Y C  ++  G
Sbjct: 61  SIPSMTEDYAGRYRCYYRSPVG 82

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1 Length = 116

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 19/90 (21%)

Query: 153 PDVTAEENENVTLSCRATGS------------PVPKIKWIFKEKIIANISSGLANMNKRQ 200
           PD T      V L C                 P    +++F      +  S  A+  + +
Sbjct: 8   PDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFY---GDDSRSEGADFTQGR 64

Query: 201 YII---KTINSLSNLTIVAVTMSDSGIYTC 227
           + +    T  +   L I  V   DS  Y C
Sbjct: 65  FSVKHILTQKAFH-LVISPVRTEDSATYYC 93

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 11/76 (14%)

Query: 158 EENENVTLSCRATGSPVPKIKWIF-KEKIIANISSGLANMNKRQYIIKTINSLSNLTIVA 216
           +  E V L C    S +    +   KE I  + S  +  ++          S +N +I  
Sbjct: 131 KSGERVILQCW---SDIMFEHFFLHKEGISKDPSRLVGQIHDGV-------SKANFSIGP 180

Query: 217 VTMSDSGIYTCRAKNG 232
           + ++ +G Y C     
Sbjct: 181 MMLALAGTYRCYGSVT 196

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A Length = 110

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 15/106 (14%)

Query: 155 VTAEENENVTLSCRATGSPVPK-----IKWIFKEK-IIANISSGLANMNK--RQYIIKTI 206
           + A  NE   L C+   S         + W  +E  ++  +  G    +    +Y+ +T 
Sbjct: 4   IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTS 63

Query: 207 NSLSNLT--IVAVTMSDSGIYTCR--AKNGAGEVF---TNISLNVI 245
               + T  +  + + D G+Y C    K   G +     N  L+V+
Sbjct: 64  FDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVL 109

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 8/64 (12%)

Query: 69  QVLDLSDNFLDRYTFRKLI----NLVELDLSYNQIQFVPSHILDSILE----LRELKLSG 120
           Q LD+    L    + +L+        + L    +       + S L     L EL L  
Sbjct: 6   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 65

Query: 121 NPIQ 124
           N + 
Sbjct: 66  NELG 69

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 19/90 (21%)

Query: 161 ENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMS 220
            +V L+C         +KW    + +          + +  +++  +           + 
Sbjct: 15  TSVELTCPL--DSDENLKWEKNGQELPQ-------KHDKHLVLQDFSE----------VE 55

Query: 221 DSGIYTCRAKNGAGEVFTNISLNVIKVETA 250
           DSG Y C         +  +   V   + A
Sbjct: 56  DSGYYVCYTPASNKNTYLYLKARVGSADDA 85

>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate binding, immune system; HET: SIA GAL GLC; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A* 1qfp_A 2bve_A* 1url_A* Length = 119

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 14/102 (13%), Positives = 28/102 (27%), Gaps = 14/102 (13%)

Query: 153 PDVTAEENENVTLSCR------ATGSPVPKIKWIFK-----EKIIANISSGLANMNKRQY 201
            +V       + + C          S      W +      + +I +    L +   R  
Sbjct: 8   KNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGR 67

Query: 202 IIKTINSLSN---LTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
                N       L +  +   DSG Y  R +      + ++
Sbjct: 68  AELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISDSNRWLDV 109

>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A Length = 200

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKR-QYIIK 204
             VT  EN+ + ++C  + +  P + W + +        ++   ++     ++  +    
Sbjct: 8   GQVTLSENDFLFINCTYSTTGYPTLFW-YVQYSGEGPQLLLQVTTANNKGSSRGFEATYD 66

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
              +  +L   +V   DS +Y C A +G  + F
Sbjct: 67  KGTTSFHLQKTSVQEIDSAVYYCAANSGTYQRF 99

>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ... Length = 208

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 20/133 (15%), Positives = 43/133 (32%), Gaps = 12/133 (9%)

Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEK-------IIANISSGLANMNKRQYIIKT 205
             ++  E    +L+C ++        W +++        +++  S G     +    +  
Sbjct: 10  ESLSVPEGGMASLNCTSSDRNFQYFWW-YRQHSGEGPKALMSIFSDGDKKEGRFTAHLNK 68

Query: 206 INSLSNLTIVAVTMSDSGIYTC--RAKNGAGEVFTNISLNVIKVETAVAQPDPVYLVASL 263
            +   +L I     SDS +Y C    +N   +  T      + V   +  PDP       
Sbjct: 69  ASLHVSLHIRDSQPSDSALYFCAASEQNNYAQGLTFGLGTRVSVFPYIQNPDPAVYQLRD 128

Query: 264 TTVVTIILTACFV 276
           +       + C  
Sbjct: 129 SKSSDK--SVCLF 139

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 11/110 (10%)

Query: 137 LNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANM 196
             L+ F        +      E +   T+ C   G        +        ++  +   
Sbjct: 180 YQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYG 239

Query: 197 NKRQYIIKTINSLSNLTIVAVTMSDSGIY--TCRAKNGAGEVFTNISLNV 244
           N         +S S    V+VT  D G    TC    G     T  ++ +
Sbjct: 240 N---------DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 280

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 38.2 bits (88), Expect = 5e-04
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 19/92 (20%)

Query: 152 TPDVTAEENE------NVTLSCRATGSPVPKIKWIFKEKII-ANISSGLANMNKRQYIIK 204
              +T    +       V L+C     P  +I W   +K I  +        ++    +K
Sbjct: 7   MGGITQTPYKVSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLK 64

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV 236
             +           +  SG Y C  +    E 
Sbjct: 65  EFS----------ELEQSGYYVCYPRGSKPED 86

>1smo_A Triggering receptor expressed on myeloid cells 1; activating receptors, TREM-1, innate immune system receptor, system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1 Length = 119

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 15/107 (14%)

Query: 155 VTAEENENVTLSCRATGSPVPK-IKWIFKEK------IIANISSGLANMN---KRQYIIK 204
              +E + + + C  T        K     +       +A       N +     + I++
Sbjct: 9   YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILE 68

Query: 205 TINSLS--NLTIVAVTMSDSGIYTC---RAKNGAGEVFTNISLNVIK 246
             +      + +V + + DSG+Y C   +       +F  I L V K
Sbjct: 69  DYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVTK 115

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 17/129 (13%), Positives = 30/129 (23%), Gaps = 26/129 (20%)

Query: 153 PDVTAEENENVTLSCR-------ATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
                + + N T  C                I W      I            ++     
Sbjct: 11  ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTI-----------PKEQYTII 59

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPD--PVYLVASL 263
             + S++T   +  S +   TC         F  +  NV  +      P   P  L   +
Sbjct: 60  NRTASSVTFTDIA-SLNIQLTCNILT-----FGQLEQNVYGITIISGLPPEKPKNLSCIV 113

Query: 264 TTVVTIILT 272
                +   
Sbjct: 114 NEGKKMRCE 122

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae} Length = 135

 Score = 38.7 bits (89), Expect = 7e-04
 Identities = 14/103 (13%), Positives = 22/103 (21%), Gaps = 23/103 (22%)

Query: 153 PDVTAEENENVTLSCRATGSP---VPKIKWIF----KEKIIANISSGLANMNKRQYIIKT 205
            +V       V L C    +     P I W+              +         ++   
Sbjct: 12  TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 71

Query: 206 INSLS----------------NLTIVAVTMSDSGIYTCRAKNG 232
               S                 L +  V   D G Y C+    
Sbjct: 72  SYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQW 114

>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick filament, immune system, cell adhesion; NMR {Mus musculus} Length = 142

 Score = 38.4 bits (89), Expect = 7e-04
 Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 172 SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN 231
           S   K+ +IF EK I        ++++   II+       + +  +   D G YT + ++
Sbjct: 65  SSNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIE-------MFMEKLQDEDEGTYTFQIQD 117

Query: 232 GAGEVFTNISLNVIK 246
           G      + +L +I 
Sbjct: 118 GKAT--GHSTLVLIG 130

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 9/74 (12%)

Query: 159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT 218
             E V L C      + +   + +E +  +    +   +          S +N +I  +T
Sbjct: 21  SEETVILQCW--SDVMFEHFLLHREGMFNDTLRLIGEHHDGV-------SKANFSISRMT 71

Query: 219 MSDSGIYTCRAKNG 232
              +G Y C     
Sbjct: 72  QDLAGTYRCYGSVT 85

>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ... Length = 229

 Score = 39.7 bits (92), Expect = 7e-04
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 9/111 (8%)

Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTIN 207
             +   + EN  L C  + +P   ++W  ++      ++  +       +  +Y      
Sbjct: 9   QSLVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDK 68

Query: 208 SL--SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDP 256
               S L I A  + D+  Y C   +    +F   S   + V   +  P+P
Sbjct: 69  DAKHSTLHITATLLDDTATYFCVVGDRGSALF--GSGTQLIVIPYIQNPEP 117

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 18/92 (19%)

Query: 51  LCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKL--------INLVELDLSYNQIQFV 102
           L K     +IP  +      LDLS N L   ++ +L         ++V L+L  N +   
Sbjct: 187 LAKF--LASIPASV----TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240

Query: 103 PSHILDSILE----LRELKLSGNPIQKITHEA 130
               L  + +    L+ + L  + ++ ++ E 
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ 272

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	369
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.95
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.84
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.79
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.78
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.69
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.69
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.67
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.66
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.66
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.64
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.63
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.62
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.58
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.57
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.55
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.55
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.55
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.54
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.54
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.54
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.53
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.53
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.53
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.52
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.51
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.5
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.5
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.5
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.49
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.49
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.47
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.46
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.46
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.45
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.45
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.45
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.45
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.44
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.44
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.44
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.44
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.44
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.43
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.42
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.42
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.42
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.41
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.41
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.4
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.39
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.39
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.39
1he7_A	126	High affinity nerve growth factor receptor; transf	99.39
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.39
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.39
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.38
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.38
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.36
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.36
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.36
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.35
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.34
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.33
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.33
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.33
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.33
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.32
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.31
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	99.31
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.3
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.3
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.29
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.29
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.28
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.27
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.27
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.27
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.26
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.26
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.26
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.26
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.25
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.25
2ens_A	96	Advanced glycosylation END product-specific recept	99.25
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.25
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.25
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.24
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.24
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.24
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.24
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.24
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.23
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.22
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.22
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.2
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.2
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.2
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.2
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.2
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.2
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.19
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.19
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.19
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.18
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.18
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.17
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.17
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.17
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.16
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.16
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.16
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.16
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.15
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.15
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.13
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.13
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.12
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.12
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.11
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.11
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	99.11
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.1
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.1
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.09
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.09
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.09
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.08
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.08
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.08
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.07
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.06
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.05
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	99.05
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.05
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	99.05
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.05
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.05
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.04
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	99.04
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.04
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.04
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.04
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.04
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.03
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.03
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.03
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.03
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	99.03
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.03
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.03
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.03
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.03
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.03
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.03
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.03
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	99.03
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.02
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.02
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.01
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.01
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.01
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.0
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.0
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.0
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.0
3khq_A	133	B-cell antigen receptor complex-associated protei	98.99
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.99
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	98.99
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	98.98
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	98.98
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.97
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	98.97
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	98.97
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	98.96
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	98.96
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.96
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	98.96
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	98.96
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.96
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	98.95
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.95
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.95
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	98.95
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.94
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	98.94
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	98.93
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.93
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	98.93
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	98.93
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	98.92
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	98.92
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.92
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.92
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	98.92
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	98.92
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.92
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.92
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	98.92
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.91
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	98.91
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	98.91
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	98.9
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	98.9
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.9
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.9
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	98.9
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	98.9
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.9
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	98.89
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.89
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.89
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	98.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.89
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	98.89
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.88
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.88
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	98.88
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.88
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	98.88
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	98.87
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	98.87
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.87
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	98.87
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	98.86
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	98.86
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.86
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.86
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.86
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	98.86
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.86
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.85
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	98.85
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.85
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	98.85
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	98.85
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	98.84
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.84
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	98.84
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.84
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.84
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.84
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.84
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.84
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	98.83
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	98.83
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	98.83
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.83
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.83
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.83
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	98.83
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	98.82
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	98.82
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.81
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.81
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	98.81
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.81
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.81
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	98.8
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.8
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.8
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	98.8
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.8
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.8
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.8
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	98.8
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	98.8
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	98.8
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.79
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	98.79
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	98.79
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	98.79
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.79
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	98.78
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.78
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.78
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	98.78
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	98.78
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.77
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.77
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	98.77
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	98.77
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.77
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	98.77
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.77
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	98.77
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	98.77
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	98.77
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.77
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.77
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.77
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.77
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.76
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	98.76
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	98.76
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.76
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.76
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	98.76
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	98.76
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.76
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	98.75
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.75
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.75
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.75
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.74
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.74
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.74
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	98.74
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.73
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.73
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.73
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.73
1xt5_A	135	Variable region-containing chitin-binding protein	98.73
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	98.73
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	98.73
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.72
3kg5_A	134	B-cell antigen receptor complex-associated protei	98.72
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.72
1p4b_L	135	Antibody variable light chain; FV antibody, antige	98.72
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	98.72
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.72
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.72
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	98.72
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.72
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	98.72
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	98.71
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	98.71
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	98.71
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	98.71
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	98.71
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.71
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	98.71
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	98.71
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	98.71
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	98.71
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	98.17
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	98.7
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	98.7
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.7
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.7
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.7
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	98.7
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.7
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	98.7
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	98.7
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.7
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	98.7
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	98.69
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	98.69
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	98.69
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	98.69
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	98.69
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	98.69
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.68
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.68
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	98.68
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	98.68
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.68
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	98.68
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	98.68
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.68
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	98.68
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	98.67
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	98.67
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	98.67
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.67
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	98.67
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	98.67
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	98.66
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	98.66
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	98.66
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.66
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.66
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.66
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.66
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.65
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	98.65
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.65
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	98.65
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	98.64
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	98.64
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	98.63
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.63
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	98.62
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	98.62
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	98.62
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	98.62
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.62
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.61
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	98.61
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	98.61
2otu_A	115	FV light chain variable domain; antibody FV polygl	98.61
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	98.61
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.6
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.6
2hp4_A	114	T-cell surface glycoprotein CD8 alpha chain; CO-re	98.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.6
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.6
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	98.59
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.59
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.59
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.58
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.58
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.58
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.58
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.57
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.57
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.57
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	98.57
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.56
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	98.56
1nez_G	128	T-cell surface glycoprotein CD8 alpha chain; immun	98.55
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	98.55
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.55
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.54
1xed_A	117	Polymeric-immunoglobulin receptor; IG-like fold, i	98.54
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.54
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.54
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.54
3dmm_D	150	T-cell surface glycoprotein CD8 beta chain; T cell	98.54
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.54
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.54
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	98.53
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.53
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	98.53
3bdb_A	137	Novel immune-type receptor 11; immunoglobulin vari	98.53
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.53
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.53
2h32_A	126	Immunoglobulin IOTA chain; beta sheets, V and C-ty	98.53
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	98.52
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.52
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.52
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	98.52
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.52
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	98.52
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	98.52
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	98.51
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.51
2ol3_A	142	BM3.3 T-cell receptor alpha-chain; T cell receptor	98.51
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.51
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.51
3r8b_B	125	G5-8, enterotoxin type B; immunoglobulin-like, OB-	98.51
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.5
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.5
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	98.5
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.5
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.5
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	98.5
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.5
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.5
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.5
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.5
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.5
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.49
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	98.49
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	98.49
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.49
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.49
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.49
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.49
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.49
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.49
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.49
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.48
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.48
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	98.48
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.48
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	98.48
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.48
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	98.48
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.48
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.47
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.47
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.47
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.47
2frg_P	106	TREM-like transcript-1; immunoglobulin-like, beta-	98.47
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.47
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.46
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.46

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=1.1e-28  Score=232.57  Aligned_cols=95  Identities=26%  Similarity=0.446  Sum_probs=70.2

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+..+.+.+|++++|.|.+ +.|.|.+.|+++++.+......     ..++.+   ...+.|.|.+++.+|+|.|
T Consensus       342 P~i~~~~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~-----~~~~~~---~~~~~L~I~~v~~~D~G~Y  412 (440)
T 3zyj_A          342 PVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAY-----KVRIAV---LSDGTLNFTNVTVQDTGMY  412 (440)
T ss_dssp             CCEEECCCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSC-----CSSEEE---CTTCCEEESSCCSTTCEEE
T ss_pred             CcccccccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccCC-----CceEEE---ccCCeEEEccCChhhCEEE
Confidence            334445677889999999999999 6789999999966554432110     112221   2346799999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEeecCC
Q psy12695        226 TCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      +|.|.|..|..++.+.+.|...+.
T Consensus       413 ~C~a~N~~G~~~~~~~~~v~~~~~  436 (440)
T 3zyj_A          413 TCMVSNSVGNTTASATLNVTGTHH  436 (440)
T ss_dssp             EEEEECSSCEEEEEEEEEEC----
T ss_pred             EEEEEcCCCcEEEEEEEEEecccc
Confidence            999999999999999999987654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.96  E-value=8.3e-28  Score=220.73  Aligned_cols=204  Identities=22%  Similarity=0.354  Sum_probs=138.8

Q ss_pred             CcCcCCCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hh------------------------
Q psy12695         29 LQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RY------------------------   81 (369)
Q Consensus        29 ~~~~~~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~------------------------   81 (369)
                      ......||..|.|..    ..++|++++|+.+|..+|..++.|+|++|+|.   +.                        
T Consensus         6 ~~~~~~Cp~~C~C~~----~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~   81 (361)
T 2xot_A            6 GRSVVSCPANCLCAS----NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS   81 (361)
T ss_dssp             -CCCTTCCTTCEEET----TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT
T ss_pred             CCcCCCCCCCCEECC----CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh
Confidence            356789999999984    58999999999999999998999999888833   33                        


Q ss_pred             -hccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCcccccCcC-----------------------
Q psy12695         82 -TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL-----------------------  137 (369)
Q Consensus        82 -~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l-----------------------  137 (369)
                       +|.++++|+.|+|++|+|+.+++..|.++++|+.|+|++|.|+.+.++.|.++++|                       
T Consensus        82 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~  161 (361)
T 2xot_A           82 EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK  161 (361)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----
T ss_pred             hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc
Confidence             45555555555555555555555555555555555555555544443333322210                       


Q ss_pred             -----------------------------------ccccccCC-----------------------------CCc-----
Q psy12695        138 -----------------------------------NLEDFACS-----------------------------PNI-----  148 (369)
Q Consensus       138 -----------------------------------~~~~~~c~-----------------------------p~i-----  148 (369)
                                                         ..+.+.|.                             |..     
T Consensus       162 l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~  241 (361)
T 2xot_A          162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIF  241 (361)
T ss_dssp             CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHTTCHHHHTTGGGCEEESSSCCEEGG
T ss_pred             CCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHhcCCchhccCcCCEeCCChHHcCcc
Confidence                                               11112221                             100     


Q ss_pred             --------cCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCC
Q psy12695        149 --------RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMS  220 (369)
Q Consensus       149 --------~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~  220 (369)
                              ...+.++++.+|+.+.|.|.+.| |.|.|.|+++++.+.....     ...++.+    ..+.|.|.+++.+
T Consensus       242 ~~~~~~C~~~~~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~-----~~~r~~~----~~~~L~I~~v~~~  311 (361)
T 2xot_A          242 SLDFFNCSEYKESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQG-----SNGSVSV----RNGDLFFKKVQVE  311 (361)
T ss_dssp             GCCCTTCCSCCCCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCC-----SSSSEEE----ETTEEEESSCCTT
T ss_pred             ccccccCCCccccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecc-----cCCceEe----ecCeEEEeecCcc
Confidence                    01245678999999999999999 9999999998765433211     1112322    3567999999999


Q ss_pred             CCEEEEEEEEeCCceEEEEEEEEEee
Q psy12695        221 DSGIYTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       221 D~G~Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      |+|.|+|.|.|..|..+..+.|.|..
T Consensus       312 D~G~Y~C~a~N~~g~~~~~~~l~V~~  337 (361)
T 2xot_A          312 DGGVYTCYAMGETFNETLSVELKVYN  337 (361)
T ss_dssp             SCEEEEEEEECSSCEEEEEEEEEEES
T ss_pred             cCEEEEEEEecCCCccEEEEEEEEEe
Confidence            99999999999999999999999965

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=6.5e-28  Score=228.20  Aligned_cols=94  Identities=28%  Similarity=0.464  Sum_probs=69.2

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+....+.+|+.++|.|.+.  |.|.|.|+++++........     ..++.+   ...+.|.|.+++.+|+|.|
T Consensus       353 P~i~~~~~~~~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~~-----~~~~~~---~~~g~L~i~~v~~~D~G~Y  422 (452)
T 3zyi_A          353 PFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASR-----HPRISV---LNDGTLNFSHVLLSDTGVY  422 (452)
T ss_dssp             CCCSBCCCCEECCTTSCCEECCBCC--TTSEEEEECTTSCEECSSCC-----CSSCEE---CTTSCEECSSCCTTCCEEE
T ss_pred             cccccccccccccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccCCC-----CCCEEE---CCCCeEEEeecCHHHCEEE
Confidence            4455567778999999999999998  99999999966544322110     111111   2346799999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEeecCC
Q psy12695        226 TCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      +|.|.|..|..++.+.|.|...+.
T Consensus       423 ~C~a~N~~G~~~~~~~l~v~~~~~  446 (452)
T 3zyi_A          423 TCMVTNVAGNSNASAYLNVSTAGT  446 (452)
T ss_dssp             EEEEECSSCEEEEEEEEEC-----
T ss_pred             EEEEEcCCCcEEEEEEEEEEcccc
Confidence            999999999999999999987654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.95  E-value=1.4e-28  Score=224.69  Aligned_cols=199  Identities=20%  Similarity=0.340  Sum_probs=162.8

Q ss_pred             CCCCC-eecccCCceEEEecCC-CCCccCCCCCCC--ccEEEeec-cee---ChhhccCCcccCeeeccCCcccccCCcc
Q psy12695         35 CPSTC-ECKWKGGKETVLCKAK-NFTTIPEQLDVG--TQVLDLSD-NFL---DRYTFRKLINLVELDLSYNQIQFVPSHI  106 (369)
Q Consensus        35 cp~~C-~c~~~~~~~~~~c~~~-~l~~ip~~~~~~--~~~L~l~~-n~i---~~~~f~~l~~L~~L~Ls~N~l~~i~~~~  106 (369)
                      ||..| .|.+    ..++|+++ +|+.||. ++..  ++.|+|++ |+|   .+.+|.+|++|+.|+|++|+|+.+++.+
T Consensus         1 cp~~c~~C~~----~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~   75 (347)
T 2ifg_A            1 CPDACCPHGS----SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA   75 (347)
T ss_dssp             CCSSSCCSSS----SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG
T ss_pred             CCCcCccccC----CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHH
Confidence            99999 9985    46899998 9999999 8754  99999996 885   4788999999999999999999999999


Q ss_pred             cccccccccccccccceecccCCcccccC--c---------------------------CccccccC-------------
Q psy12695        107 LDSILELRELKLSGNPIQKITHEAFINVP--K---------------------------LNLEDFAC-------------  144 (369)
Q Consensus       107 f~~l~~L~~L~L~~N~l~~~~~~~f~~l~--~---------------------------l~~~~~~c-------------  144 (369)
                      |.+|++|+.|+|++|.|+.+++..|..+.  .                           ++.+.+.|             
T Consensus        76 ~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~l~~l~~~~  155 (347)
T 2ifg_A           76 FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNAS  155 (347)
T ss_dssp             GGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCCCTT
T ss_pred             hcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCChHHhcCCccc
Confidence            99999999999999999999998887543  1                           11233444             


Q ss_pred             --CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        145 --SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       145 --~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                        .|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+......           ......+.|.|.+++.+|+
T Consensus       156 c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~-----------~~~~~~~~L~i~~v~~~D~  224 (347)
T 2ifg_A          156 CGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK-----------SGGLPSLGLTLANVTSDLN  224 (347)
T ss_dssp             CCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC-----------CCCSSEEEEEEESCCSTTT
T ss_pred             CCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccccc-----------ceecccceEEEeeCChHHC
Confidence              244444567788999999999999999999999999988654321110           0123467899999999999


Q ss_pred             E-EEEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        223 G-IYTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       223 G-~Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      | .|+|.|.|..|..+..+.|.|..++.
T Consensus       225 G~~Y~C~a~n~~g~~~~~~~l~V~~~P~  252 (347)
T 2ifg_A          225 RKNVTCWAENDVGRAEVSVQVNVSFPAS  252 (347)
T ss_dssp             TCCEEECCEETTEECCEEECCCCBEEEE
T ss_pred             CCeEEEEEEcCCCCEEEEEEEEEcCCCe
Confidence            9 99999999999988888888766554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=8.6e-25  Score=208.20  Aligned_cols=84  Identities=27%  Similarity=0.466  Sum_probs=66.0

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ..+.+.+|+.++|.|.+.|.|.|.+.|+++++.+.....      ..++.+   ...+.|.|.+++.+|+|.|+|.|.|.
T Consensus       393 ~~~~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~------~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~  463 (477)
T 2id5_A          393 QQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKS------NGRLTV---FPDGTLEVRYAQVQDNGTYLCIAANA  463 (477)
T ss_dssp             EEEEEETTCCEEECCCEEEESCCEEEEECTTSCBC-------------CEE---CTTSCEEESSCCSTTCEEEEEEEEET
T ss_pred             ccEEEeCCCeEEEEEeccccCCCEEEEEECCccccccCC------CceEEe---CCCCEEEEeeCChHHCEEEEEEEEeC
Confidence            456788999999999999999999999998876542111      111111   22467999999999999999999999


Q ss_pred             CceEEEEEEEEEe
Q psy12695        233 AGEVFTNISLNVI  245 (369)
Q Consensus       233 ~g~~~~~~~l~v~  245 (369)
                      .|..+..+.|.|.
T Consensus       464 ~g~~~~~~~l~V~  476 (477)
T 2id5_A          464 GGNDSMPAHLHVR  476 (477)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEe
Confidence            9999999888885

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.84  E-value=3e-20  Score=169.50  Aligned_cols=193  Identities=19%  Similarity=0.238  Sum_probs=141.4

Q ss_pred             ceEEEecC-CCCCccCCC-C--CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccccccccccc
Q psy12695         47 KETVLCKA-KNFTTIPEQ-L--DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLS  119 (369)
Q Consensus        47 ~~~~~c~~-~~l~~ip~~-~--~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  119 (369)
                      .+.++.++ |.|+.+|.. +  ...++.|+|++|+|.   +.+|.+|++|+.|||++|+|+.+++..|..+. |+.|+|.
T Consensus        33 L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~  111 (347)
T 2ifg_A           33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLS  111 (347)
T ss_dssp             CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECC
T ss_pred             eeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEee
Confidence            67899996 999999864 3  357999999999954   78999999999999999999999999999886 9999999


Q ss_pred             ccceecccC-----------------C--------cccccC-------c-------------------------------
Q psy12695        120 GNPIQKITH-----------------E--------AFINVP-------K-------------------------------  136 (369)
Q Consensus       120 ~N~l~~~~~-----------------~--------~f~~l~-------~-------------------------------  136 (369)
                      +|+|.+.+.                 +        .+..++       .                               
T Consensus       112 ~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~l~~l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~  191 (347)
T 2ifg_A          112 GNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAG  191 (347)
T ss_dssp             SSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCC
T ss_pred             CCCccCCCccHHHHHHHHhCcccccccCCCCCCChHHhcCCcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEE
Confidence            999875332                 0        011111       0                               


Q ss_pred             ------------------------------Cccc-cccCCCCcc-------------CCCC--CeeeccCCeEEEEEEee
Q psy12695        137 ------------------------------LNLE-DFACSPNIR-------------PITP--DVTAEENENVTLSCRAT  170 (369)
Q Consensus       137 ------------------------------l~~~-~~~c~p~i~-------------~~~~--~~~~~~G~~~~l~C~~~  170 (369)
                                                    -+.+ .|.|...-.             ..|.  ...+.+|+.+.|.|.+.
T Consensus       192 W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i~~~~~~~g~~v~l~C~~~  271 (347)
T 2ifg_A          192 WILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVD  271 (347)
T ss_dssp             EEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEEEECCCEESSSEEEEEEEE
T ss_pred             EEcCCceeecccccceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCeeeeccCccCceEEEEEEee
Confidence                                          1122 455521100             0011  22345699999999999


Q ss_pred             CCCCCeEEEEeCCeEeeecccccccCCcceEEEEe-----ecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy12695        171 GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT-----INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       171 g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      |.|.|.|.|++++..+......       ......     ....+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus       272 g~P~p~i~W~~~g~~l~~~~~~-------~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  344 (347)
T 2ifg_A          272 GQPAPSLRWLFNGSVLNETSFI-------FTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM  344 (347)
T ss_dssp             EESCCEEEEEETTEECCCCSSE-------EEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSC
T ss_pred             ecCCCcEEEEeCCEECCCCcce-------eeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEec
Confidence            9999999999999876532110       000000     1235679999999999999999999999999999988886


Q ss_pred             ec
Q psy12695        246 KV  247 (369)
Q Consensus       246 ~~  247 (369)
                      .+
T Consensus       345 ~~  346 (347)
T 2ifg_A          345 DN  346 (347)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.79  E-value=3.8e-19  Score=145.56  Aligned_cols=112  Identities=28%  Similarity=0.538  Sum_probs=100.9

Q ss_pred             CcCCCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccc
Q psy12695         31 VFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHIL  107 (369)
Q Consensus        31 ~~~~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f  107 (369)
                      .+.+||..|.|.    .+.++|++++|+.+|..++..++.|+|++|+|.   +..|.++++|+.|+|++|+|+.+++..|
T Consensus         2 ~~~~CP~~C~C~----~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~   77 (174)
T 2r9u_A            2 HSAGCPSQCSCD----QTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF   77 (174)
T ss_dssp             CCCSSCTTSEEC----SSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCCCCCCCCEEC----CcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHh
Confidence            467899999997    468999999999999999999999999999965   6789999999999999999999999999


Q ss_pred             ccccccccccccccceecccCCcccccCcCcc-----ccccCCC
Q psy12695        108 DSILELRELKLSGNPIQKITHEAFINVPKLNL-----EDFACSP  146 (369)
Q Consensus       108 ~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~-----~~~~c~p  146 (369)
                      ..+++|+.|+|++|.|+.++++.|..+++|..     +.+.|.+
T Consensus        78 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           78 DKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             CCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            99999999999999999999988998888654     4455544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.78  E-value=3.8e-19  Score=145.00  Aligned_cols=109  Identities=34%  Similarity=0.621  Sum_probs=98.0

Q ss_pred             CCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccc
Q psy12695         34 ECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSI  110 (369)
Q Consensus        34 ~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l  110 (369)
                      +||..|.|.+    +.++|++++|+.+|..++..++.|+|++|+|.   +.+|.++++|+.|+|++|+|+.+++++|.++
T Consensus         2 ~CP~~C~C~~----~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l   77 (170)
T 3g39_A            2 ACPSQCSCSG----TTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL   77 (170)
T ss_dssp             CCC-CCEEET----TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred             cCcCcCCcCC----CEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCC
Confidence            7999999984    57999999999999999999999999999965   6789999999999999999999999999999


Q ss_pred             cccccccccccceecccCCcccccCcCcc-----ccccCCC
Q psy12695        111 LELRELKLSGNPIQKITHEAFINVPKLNL-----EDFACSP  146 (369)
Q Consensus       111 ~~L~~L~L~~N~l~~~~~~~f~~l~~l~~-----~~~~c~p  146 (369)
                      ++|+.|+|++|+|+.++++.|..+++|..     +.+.|.+
T Consensus        78 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           78 TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            99999999999999999999998888654     4455543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.75  E-value=2.8e-18  Score=142.84  Aligned_cols=107  Identities=24%  Similarity=0.400  Sum_probs=96.7

Q ss_pred             CCCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCcccccc
Q psy12695         33 AECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSI  110 (369)
Q Consensus        33 ~~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l  110 (369)
                      ..||..|.|.+    +.++|++++++.+|..+|.+++.|+|++|+|.  +.+|.++++|+.|+|++|+|+.+++.+|.++
T Consensus         2 ~~CP~~C~C~~----~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l   77 (193)
T 2wfh_A            2 SRCPTECTCLD----TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM   77 (193)
T ss_dssp             --CCTTCEEET----TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCCCCCEeCC----CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCC
Confidence            47999999984    58999999999999999999999999999976  4689999999999999999999999999999


Q ss_pred             cccccccccccceecccCCcccccCcCcccccc
Q psy12695        111 LELRELKLSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       111 ~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      ++|+.|+|++|+|+.++++.|.++++|...++.
T Consensus        78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            999999999999999999999998887665544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=7.5e-18  Score=143.35  Aligned_cols=108  Identities=28%  Similarity=0.441  Sum_probs=98.8

Q ss_pred             cCCCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccc
Q psy12695         32 FAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILD  108 (369)
Q Consensus        32 ~~~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~  108 (369)
                      ...||..|.|.+    ..++|++++|+.||..+|..++.|+|++|+|.   +.+|.++++|+.|+|++|+|+.+.+.+|.
T Consensus         2 ~~~CP~~C~C~~----~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~   77 (220)
T 2v9t_B            2 SLHCPAACTCSN----NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ   77 (220)
T ss_dssp             CCCSCTTSEEET----TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CCCCCCCCEECC----CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh
Confidence            468999999984    57999999999999999999999999999955   66899999999999999999999999999


Q ss_pred             cccccccccccccceecccCCcccccCcCcccccc
Q psy12695        109 SILELRELKLSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       109 ~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      ++++|+.|+|++|.|+.++.+.|.++++|...++.
T Consensus        78 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~  112 (220)
T 2v9t_B           78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN  112 (220)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence            99999999999999999999999988887765554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.69  E-value=4e-17  Score=135.77  Aligned_cols=106  Identities=29%  Similarity=0.548  Sum_probs=96.9

Q ss_pred             CCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---h-hhccCCcccCeeeccCCcccccCCccccc
Q psy12695         34 ECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---R-YTFRKLINLVELDLSYNQIQFVPSHILDS  109 (369)
Q Consensus        34 ~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~  109 (369)
                      +||..|.|.+    +.++|++++|+.||..++..++.|+|++|+|.   + ..|.++++|+.|+|++|+|+.+++.+|.+
T Consensus         1 ~CP~~C~C~~----~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~   76 (192)
T 1w8a_A            1 DCPAMCHCEG----TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG   76 (192)
T ss_dssp             CCCTTSEEET----TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred             CcCCCCEECC----CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC
Confidence            5999999995    57999999999999999999999999999976   2 35999999999999999999999999999


Q ss_pred             ccccccccccccceecccCCcccccCcCcccccc
Q psy12695        110 ILELRELKLSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       110 l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      +++|+.|+|++|+|+.+++..|.++++|...++.
T Consensus        77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  110 (192)
T 1w8a_A           77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY  110 (192)
T ss_dssp             CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECC
T ss_pred             cccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence            9999999999999999999999988887766554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.69  E-value=4.1e-17  Score=138.73  Aligned_cols=108  Identities=25%  Similarity=0.445  Sum_probs=97.0

Q ss_pred             cCCCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC----hhhccCCcccCeeeccCCcccccCCccc
Q psy12695         32 FAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD----RYTFRKLINLVELDLSYNQIQFVPSHIL  107 (369)
Q Consensus        32 ~~~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~----~~~f~~l~~L~~L~Ls~N~l~~i~~~~f  107 (369)
                      ...||..|.|.+    +.++|++++++.||..++..++.|+|++|+|.    ..+|.++++|+.|+|++|+|+.+++.+|
T Consensus         2 ~~~CP~~C~C~~----~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~   77 (220)
T 2v70_A            2 SLACPEKCRCEG----TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF   77 (220)
T ss_dssp             --CCCTTCEEET----TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT
T ss_pred             CCCCCCCCEECC----CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHh
Confidence            458999999995    47999999999999999999999999999965    3569999999999999999999999999


Q ss_pred             ccccccccccccccceecccCCcccccCcCcccccc
Q psy12695        108 DSILELRELKLSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       108 ~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      .++++|+.|+|++|.|+.++++.|.++++|...++.
T Consensus        78 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           78 EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             TTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred             CCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence            999999999999999999999999988887765554

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.67  E-value=2.7e-16  Score=117.56  Aligned_cols=96  Identities=23%  Similarity=0.434  Sum_probs=79.5

Q ss_pred             CCCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        144 CSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       144 c~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      .+|.|...+.++.+.+|+.+.|.|.+.|.|.|.|.|++++..+...         .++.+........|.|.+++.+|+|
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~---------~~~~~~~~~~~~~L~I~~v~~~D~G   82 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS---------ERLSFPADGAEHGLLLTAALPTDAG   82 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC---------SSEECCEETTEEEEEESSCCGGGCE
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccce---------eeEEEeecCceEEEEEecCChhhCE
Confidence            3567777788999999999999999999999999999999877532         2333333445668999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEeecC
Q psy12695        224 IYTCRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      .|+|.|.|..|..+..+.|.|..+|
T Consensus        83 ~Y~C~a~N~~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           83 VYVCRARNAAGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEC--
T ss_pred             EEEEEEEECCCEEEEEEEEEEEcCC
Confidence            9999999999999999999987653

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.66  E-value=5.7e-16  Score=114.29  Aligned_cols=95  Identities=24%  Similarity=0.529  Sum_probs=79.1

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +|.|...+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+....       ..++.+........|.|.+++.+|+|.
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~-------~~~~~~~~~~~~~~L~I~~~~~~D~G~   77 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQE-------QGRFHIENTDDLTTLIIMDVQKQDGGL   77 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTG-------GGTEEEEECSSEEEEEESSCCGGGCEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeec-------cceeeeecccceEEEEEcCCCccCCEE
Confidence            3566667788999999999999999999999999999998775322       123444444556789999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEee
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      |+|.|.|..|..+..+.|.|..
T Consensus        78 Y~C~a~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           78 YTLSLGNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEECCCEEEEEEEEEEEE
Confidence            9999999999999999998864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.66  E-value=2.1e-16  Score=129.63  Aligned_cols=105  Identities=31%  Similarity=0.550  Sum_probs=95.8

Q ss_pred             CCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccc
Q psy12695         35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSIL  111 (369)
Q Consensus        35 cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~  111 (369)
                      ||..|.|.+    +.++|++++++.+|..++..++.|+|++|+|.   +..|.++++|+.|+|++|+|+.+++..|..++
T Consensus         1 Cp~~C~C~~----~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~   76 (177)
T 2o6r_A            1 CPSRCSCSG----TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT   76 (177)
T ss_dssp             CCTTCEEET----TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             CcCCCEeCC----CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC
Confidence            999999985    47999999999999999999999999999965   56789999999999999999999999999999


Q ss_pred             ccccccccccceecccCCcccccCcCcccccc
Q psy12695        112 ELRELKLSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       112 ~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      +|+.|+|++|.|+.+++..|..+++|...++.
T Consensus        77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           77 KLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             ccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            99999999999999999888888887665543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.64  E-value=2.2e-16  Score=155.15  Aligned_cols=110  Identities=34%  Similarity=0.398  Sum_probs=92.4

Q ss_pred             cCcCCCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcc
Q psy12695         30 QVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHI  106 (369)
Q Consensus        30 ~~~~~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~  106 (369)
                      ...+.|+..|.|...  ..+++|++.+|++||.++|.++++|+|++|+|.   +.+|.++++|+.|||++|+|+.|++++
T Consensus        18 ~~~p~~~~~c~~~~~--~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~   95 (635)
T 4g8a_A           18 SSIPESWEPCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA   95 (635)
T ss_dssp             -------CCSEEEET--TTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             CCCCCCCCCccccCC--CCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhH
Confidence            334455566887754  468999999999999999999999999999954   689999999999999999999999999


Q ss_pred             cccccccccccccccceecccCCcccccCcCcccc
Q psy12695        107 LDSILELRELKLSGNPIQKITHEAFINVPKLNLED  141 (369)
Q Consensus       107 f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~  141 (369)
                      |.+|++|++|+|++|+|+.+++++|.++.+|...+
T Consensus        96 f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           96 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             hcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            99999999999999999999999999888765433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.63  E-value=3.6e-16  Score=142.57  Aligned_cols=106  Identities=24%  Similarity=0.425  Sum_probs=93.1

Q ss_pred             CCCCC-CeecccCCceEEEecCCCCCccCCCCCCCccEEEeeccee---ChhhccCCcccCeeeccCCcc-cccCCcccc
Q psy12695         34 ECPST-CECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLVELDLSYNQI-QFVPSHILD  108 (369)
Q Consensus        34 ~cp~~-C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i---~~~~f~~l~~L~~L~Ls~N~l-~~i~~~~f~  108 (369)
                      +||++ |.|.+    ++|+|++++|++||.++|.+++.|+|++|+|   .+++|.+|++|++|+|++|+| +.|+.++|.
T Consensus         1 gCp~~~C~C~~----~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~   76 (350)
T 4ay9_X            1 GCHHRICHCSN----RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS   76 (350)
T ss_dssp             -CCCSSSEEET----TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC
T ss_pred             CCCCCccEeeC----CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh
Confidence            59976 99984    5799999999999999999999999999995   478999999999999999997 558999999


Q ss_pred             ccccccc-ccccccceecccCCcccccCcCcccccc
Q psy12695        109 SILELRE-LKLSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       109 ~l~~L~~-L~L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      ++++|.. +.+++|+|+.+++++|..+++|...++.
T Consensus        77 ~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~  112 (350)
T 4ay9_X           77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS  112 (350)
T ss_dssp             SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEE
T ss_pred             cchhhhhhhcccCCcccccCchhhhhcccccccccc
Confidence            9998775 6678899999999999999987765443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.62  E-value=9.7e-16  Score=129.05  Aligned_cols=105  Identities=30%  Similarity=0.511  Sum_probs=96.3

Q ss_pred             CCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccc
Q psy12695         35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSIL  111 (369)
Q Consensus        35 cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~  111 (369)
                      ||..|.|.|    +.++|.+++++.+|..++..++.|+|++|+|.   +..|.++++|++|+|++|+|+.+++..|..++
T Consensus         1 Cp~~C~C~~----~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~   76 (208)
T 2o6s_A            1 CPSRCSCSG----TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT   76 (208)
T ss_dssp             CCTTCEEET----TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             CcCCCEECC----CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC
Confidence            999999986    47999999999999999999999999999965   56799999999999999999999999999999


Q ss_pred             ccccccccccceecccCCcccccCcCcccccc
Q psy12695        112 ELRELKLSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       112 ~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      +|+.|+|++|.|+.+++..|..+++|...++.
T Consensus        77 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            99999999999999999888888887766554

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.58  E-value=2.5e-14  Score=108.12  Aligned_cols=99  Identities=23%  Similarity=0.311  Sum_probs=82.1

Q ss_pred             CCCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        144 CSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       144 c~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      .+|.+...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+...         .++.+........|.|.+++.+|+|
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~---------~~~~~~~~~~~~~L~I~~v~~~D~G   76 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES---------EHMKVENSENGSKLTILAARQEHCG   76 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCS---------SSEEEEECSSEEEEEETTCCTTTCE
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCC---------CCEEEEEcCCEEEEEECCCChhcCE
Confidence            4577777888999999999999999999999999999998766421         1333333344678999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEeecCCcc
Q psy12695        224 IYTCRAKNGAGEVFTNISLNVIKVETAV  251 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v~~~~~~~  251 (369)
                      .|+|.|.|..|.....+.|.|...+...
T Consensus        77 ~Y~C~a~N~~g~~~~~~~l~V~~~p~~P  104 (114)
T 2cqv_A           77 CYTLLVENKLGSRQAQVNLTVVDKPDPP  104 (114)
T ss_dssp             EEEEEEECSSCEEECCEEEEEECSCSCC
T ss_pred             EEEEEEEECCCcEEEEEEEEEECCCCCC
Confidence            9999999999999999999998766543

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.57  E-value=2.4e-14  Score=106.07  Aligned_cols=97  Identities=18%  Similarity=0.249  Sum_probs=80.3

Q ss_pred             ccCCCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCC
Q psy12695        142 FACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD  221 (369)
Q Consensus       142 ~~c~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D  221 (369)
                      +...|.+...+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+...         .++.+........|.|.+++.+|
T Consensus         5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~---------~~~~~~~~~~~~~L~i~~~~~~D   75 (103)
T 3qp3_A            5 LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQES---------SKIHYTNTSGVLTLEILDCHTDD   75 (103)
T ss_dssp             TCEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCC---------SSEEEEEETTEEEEEECSCCGGG
T ss_pred             CCCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCC---------CCEEEEECCCEEEEEEcCCCccc
Confidence            345667777788899999999999999999999999999999776532         13333344456689999999999


Q ss_pred             CEEEEEEEEeCCceEEEEEEEEEeec
Q psy12695        222 SGIYTCRAKNGAGEVFTNISLNVIKV  247 (369)
Q Consensus       222 ~G~Y~C~a~n~~g~~~~~~~l~v~~~  247 (369)
                      +|.|.|.|.|..|.....+.|.|...
T Consensus        76 ~G~Y~C~a~N~~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           76 SGTYRAVCTNYKGEASDYATLDVTGG  101 (103)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CEEEEEEEEeCCCcEEEEEEEEEECC
Confidence            99999999999999999999988754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.55  E-value=1.1e-14  Score=124.47  Aligned_cols=106  Identities=32%  Similarity=0.520  Sum_probs=96.4

Q ss_pred             CCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccc
Q psy12695         34 ECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSI  110 (369)
Q Consensus        34 ~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l  110 (369)
                      ..-..|.|+|    +.|+|++++++.+|..+|.+++.|+|++|+|.   +.+|.++++|+.|+|++|+|+.+++..|.++
T Consensus        12 ~~~~~~~Cs~----~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l   87 (229)
T 3e6j_A           12 ACPSQCSCSG----TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL   87 (229)
T ss_dssp             CCCTTCEEET----TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cCCCCCEEeC----CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccC
Confidence            3456799995    46999999999999999999999999999965   6789999999999999999999999999999


Q ss_pred             cccccccccccceecccCCcccccCcCcccccc
Q psy12695        111 LELRELKLSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       111 ~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      ++|+.|+|++|.|+.+++..|..+++|...++.
T Consensus        88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls  120 (229)
T 3e6j_A           88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC  120 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcCEEECCCCcCCccChhHhCcchhhCeEecc
Confidence            999999999999999999999988888776654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.55  E-value=1e-14  Score=128.90  Aligned_cols=109  Identities=23%  Similarity=0.387  Sum_probs=96.7

Q ss_pred             CCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccc
Q psy12695         34 ECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSI  110 (369)
Q Consensus        34 ~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l  110 (369)
                      .||..|.|.... .+.++|++++++.+|..+|..++.|+|++|+|.   +.+|.++++|+.|+|++|+|+.+.+.+|..+
T Consensus         1 ~CP~~C~C~~~~-~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l   79 (285)
T 1ozn_A            1 PCPGACVCYNEP-KVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL   79 (285)
T ss_dssp             CCCTTCEEECSS-SCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CcCCCceECCCC-CeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCc
Confidence            599999997542 478999999999999999999999999999965   5679999999999999999999999999999


Q ss_pred             cccccccccccc-eecccCCcccccCcCcccccc
Q psy12695        111 LELRELKLSGNP-IQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       111 ~~L~~L~L~~N~-l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      ++|+.|+|++|. +..+.+..|..+++|...++.
T Consensus        80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~  113 (285)
T 1ozn_A           80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD  113 (285)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred             cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECC
Confidence            999999999997 999988888888887665543

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.55  E-value=5.5e-14  Score=103.25  Aligned_cols=93  Identities=26%  Similarity=0.291  Sum_probs=75.6

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+....        .............|.|.+++.+|+|.|
T Consensus         6 P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~--------~~~~~~~~~~~~~L~i~~v~~~D~G~Y   77 (99)
T 1g1c_A            6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSD--------RIYWYWPEDNVCELVIRDVTGEDSASI   77 (99)
T ss_dssp             EEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCS--------SEEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCC--------CEEEEEcCCCEEEEEECCCCcCCCEEE
Confidence            455566788899999999999999999999999999998765311        122222234566899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEee
Q psy12695        226 TCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      +|.|.|..|.....+.|.|..
T Consensus        78 ~C~a~N~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           78 MVKAINIAGETSSHAFLLVQA   98 (99)
T ss_dssp             EEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEECCCcEEEEEEEEEec
Confidence            999999999999998888864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.54  E-value=7.3e-15  Score=126.44  Aligned_cols=107  Identities=23%  Similarity=0.398  Sum_probs=94.5

Q ss_pred             CCCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCc-ccccCCcccc
Q psy12695         33 AECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQ-IQFVPSHILD  108 (369)
Q Consensus        33 ~~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~  108 (369)
                      +.||..|.|... ....|+|.+  ++.+|. +|..++.|+|++|+|.   +.+|.++++|+.|+|++|+ |+.+++.+|.
T Consensus         2 ~~cp~~C~C~~~-~~~~v~c~~--l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~   77 (239)
T 2xwt_C            2 GCSSPPCECHQE-EDFRVTCKD--IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY   77 (239)
T ss_dssp             -CCSSSCSEEEC-STTEEEECS--CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEE
T ss_pred             CCCCCCCeeCCC-CcceeEccC--ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcC
Confidence            479999999851 135788977  999999 9999999999999954   6789999999999999997 9999999999


Q ss_pred             cccccccccccc-cceecccCCcccccCcCcccccc
Q psy12695        109 SILELRELKLSG-NPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       109 ~l~~L~~L~L~~-N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      ++++|+.|+|++ |.|+.++++.|.++++|...++.
T Consensus        78 ~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~  113 (239)
T 2xwt_C           78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF  113 (239)
T ss_dssp             SCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEE
T ss_pred             CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCC
Confidence            999999999998 99999999999998887765543

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.54  E-value=5.8e-14  Score=103.32  Aligned_cols=95  Identities=24%  Similarity=0.496  Sum_probs=76.3

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +|.+...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+......       . ......+...|.|.+++.+|+|.
T Consensus         5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~-------~-~~~~~~~~~~L~i~~v~~~D~G~   76 (100)
T 2kdg_A            5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLH-------K-MIVSEKGLHSLIFEVVRASDAGA   76 (100)
T ss_dssp             EEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSS-------C-EEEETTTEEEEEESSCCGGGCEE
T ss_pred             CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcE-------E-EEEcCCCeEEEEECCCCcccCEE
Confidence            355666778899999999999999999999999999999876542211       1 11122334589999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeec
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKV  247 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~  247 (369)
                      |+|.|.|..|.....+.|.|...
T Consensus        77 Y~C~a~n~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           77 YACVAKNRAGEATFTVQLDVLAK   99 (100)
T ss_dssp             EEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEEEcCCCeEEEEEEEEEEec
Confidence            99999999999999999988754

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.54  E-value=3.2e-14  Score=103.33  Aligned_cols=88  Identities=20%  Similarity=0.324  Sum_probs=71.9

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--eEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      |.+...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++  ..+...           ...........|.|.+++.+|+|
T Consensus         3 P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~-----------~~~~~~~~~~~L~i~~~~~~D~G   71 (93)
T 1wit_A            3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE-----------LLVDAKSSTTSIFFPSAKRADSG   71 (93)
T ss_dssp             CEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTT-----------SEEEEETTEEEEECTTBCGGGCE
T ss_pred             CeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCc-----------EEEEecCCEEEEEECCCChhcCE
Confidence            55666677889999999999999999999999999998  554311           11122344578999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEE
Q psy12695        224 IYTCRAKNGAGEVFTNISLNV  244 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v  244 (369)
                      .|+|.|.|..|.....+.|.|
T Consensus        72 ~Y~C~a~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           72 NYKLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEcCCCeEEEEEEEEE
Confidence            999999999999988888876

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.53  E-value=5.9e-14  Score=103.07  Aligned_cols=93  Identities=27%  Similarity=0.476  Sum_probs=75.4

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...        ..++..........|.|.+++.+|+|.|
T Consensus         6 P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~--------~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   77 (99)
T 1u2h_A            6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPD--------QRRFAEEAEGGLCRLRILAAERGDAGFY   77 (99)
T ss_dssp             EEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCB--------TTEEEEECGGGEEEEEESSCCGGGCEEE
T ss_pred             CEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCC--------CCEEEEECCCCEEEEEEccCCcCCCEEE
Confidence            45556677889999999999999999999999999999766431        1233333333445799999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEee
Q psy12695        226 TCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      +|.|.|..|.....+.|.|..
T Consensus        78 ~C~a~N~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           78 TCKAVNEYGARQCEARLEVRG   98 (99)
T ss_dssp             EEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEECCCceeEEEEEEEEC
Confidence            999999999999998888864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.53  E-value=8.9e-15  Score=133.47  Aligned_cols=111  Identities=22%  Similarity=0.319  Sum_probs=92.5

Q ss_pred             cCcCCCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcc
Q psy12695         30 QVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHI  106 (369)
Q Consensus        30 ~~~~~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~  106 (369)
                      .....|+..|.|.+..   .++|++++++.+|..++..++.|+|++|+|.   ..+|.++++|+.|+|++|+|+.+++.+
T Consensus        19 ~~~~~~~~~~~C~~~~---~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (353)
T 2z80_A           19 KEESSNQASLSCDRNG---ICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS   95 (353)
T ss_dssp             --------CCEECTTS---EEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred             CccCCCccCCCCCCCe---EeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh
Confidence            3455688899999753   5899999999999999999999999999965   568999999999999999999999999


Q ss_pred             cccccccccccccccceecccCCcccccCcCcccccc
Q psy12695        107 LDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       107 f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      |.++++|+.|+|++|.|+.++...|.++++|...++.
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            9999999999999999999998888888887665543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.53  E-value=7.8e-15  Score=127.26  Aligned_cols=108  Identities=30%  Similarity=0.524  Sum_probs=96.7

Q ss_pred             CCCCC--CeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccc
Q psy12695         34 ECPST--CECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILD  108 (369)
Q Consensus        34 ~cp~~--C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~  108 (369)
                      +||..  |.|...  .+.++|++++++.+|..+|..++.|+|++|+|.   +.+|.++++|++|+|++|+|+.+++.+|.
T Consensus         3 ~Cp~~~gC~C~~~--~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   80 (251)
T 3m19_A            3 TCETVTGCTCNEG--KKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD   80 (251)
T ss_dssp             -CHHHHSSEEEGG--GTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             cCCCCCceEcCCC--CeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc
Confidence            68877  999532  468999999999999999999999999999965   66899999999999999999999999999


Q ss_pred             cccccccccccccceecccCCcccccCcCcccccc
Q psy12695        109 SILELRELKLSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       109 ~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      ++++|+.|+|++|.|+.+++..|..+++|...++.
T Consensus        81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence            99999999999999999999999988887766554

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.52  E-value=2.3e-13  Score=103.11  Aligned_cols=97  Identities=25%  Similarity=0.324  Sum_probs=79.3

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeec-ceeeEEEcccCCCCCE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN-SLSNLTIVAVTMSDSG  223 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G  223 (369)
                      .|.+...+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+...        ..++.+.... +...|.|.+++.+|+|
T Consensus        15 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~--------~~~~~~~~~~~~~~~L~I~~v~~~D~G   86 (116)
T 2kkq_A           15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFN--------TDRISLYQDNTGRVTLLIKDVNKKDAG   86 (116)
T ss_dssp             CCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCC--------BTTEEEEECTTCEEEEEEEEECGGGCE
T ss_pred             CCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCC--------CCeEEEEeCCCCeEEEEECCCCcccCE
Confidence            577888889999999999999999999999999999999776431        1223222221 2348999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        224 IYTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      .|+|.|.|..|.....+.|.|...+.
T Consensus        87 ~Y~C~a~N~~G~~~~~~~l~V~~~p~  112 (116)
T 2kkq_A           87 WYTVSAVNEAGVTTCNTRLDVTARPN  112 (116)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECCSC
T ss_pred             EEEEEEEcCCCeEEEEEEEEEeCCCC
Confidence            99999999999999999999987654

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.51  E-value=1.5e-13  Score=100.82  Aligned_cols=93  Identities=30%  Similarity=0.428  Sum_probs=76.4

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .|.+...+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+..         ..++.+........|.|.+++.+|+|.
T Consensus         6 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~---------~~~~~~~~~~~~~~L~i~~~~~~d~G~   76 (99)
T 3puc_A            6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQ---------GGKYKLSEDKGGFFLEIHKTDTSDSGL   76 (99)
T ss_dssp             EEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCS---------SSSEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcC---------CCCEEEEEeCCEEEEEECCCCcccCEE
Confidence            35566667888999999999999999999999999999876642         123444444455689999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEee
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      |.|.|.|..|.....+.|.|..
T Consensus        77 Y~C~a~n~~g~~~~~~~l~V~~   98 (99)
T 3puc_A           77 YTCTVKNSAGSVSSSCKLTIKA   98 (99)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEeCCCcEeEEEEEEEEe
Confidence            9999999999999888888763

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.50  E-value=1.1e-13  Score=103.51  Aligned_cols=94  Identities=18%  Similarity=0.211  Sum_probs=71.4

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCC---CeEEEEeCCeEeeecccccccCCcceEEEEe--e----cceeeEEEcc
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPV---PKIKWIFKEKIIANISSGLANMNKRQYIIKT--I----NSLSNLTIVA  216 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~---p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~L~I~~  216 (369)
                      |.+...|..+.+.+|+.++|.|.+.|.|.   |.|.|++++.......      ...++.+..  .    ...+.|.|.+
T Consensus         5 p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~L~I~~   78 (108)
T 3cx2_A            5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSK------VGQHLQLHDSYDRASKVYLFELHITD   78 (108)
T ss_dssp             CSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGG------CBTTEEEEEEEETTTTEEEEEEEECS
T ss_pred             cEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCccccccc------CCceEEEeeEEecccccceEEEEEec
Confidence            56677788999999999999999999998   9999999763221110      011222211  0    1246899999


Q ss_pred             cCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy12695        217 VTMSDSGIYTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       217 v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      ++.+|+|.|+|.|.|..|..++.+.|.|.
T Consensus        79 v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           79 AQPAFTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             CCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CCCccCEEEEEEEecCCCceEEEEEEEEe
Confidence            99999999999999999999999999885

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.2e-13  Score=102.19  Aligned_cols=97  Identities=30%  Similarity=0.406  Sum_probs=78.5

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEee-cceeeEEEcccCCCCCE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI-NSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G  223 (369)
                      .|.+...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+...        ..++.+... .+...|.|.+++.+|+|
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~--------~~~~~~~~~~~~~~~L~i~~v~~~D~G   79 (110)
T 2dm2_A            8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPK--------SDHYTIQRDLDGTCSLHTTASTLDDDG   79 (110)
T ss_dssp             CCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTT--------CSSEEEEECTTCEEEEEESSCCTTTCS
T ss_pred             CCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCC--------CCeEEEEECCCcEEEEEECCCChhhCE
Confidence            567777788899999999999999999999999999988765421        123333222 23347999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        224 IYTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      .|+|.|.|..|.....+.|.|...+.
T Consensus        80 ~Y~C~a~N~~g~~~~~~~l~V~~~~~  105 (110)
T 2dm2_A           80 NYTIMAANPQGRISCTGRLMVQAVNS  105 (110)
T ss_dssp             CCEEEEECTTCCEEECCCEEEECCSC
T ss_pred             EEEEEEEECCCeEEEEEEEEEECCCC
Confidence            99999999999999999999987654

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.49  E-value=5.7e-13  Score=97.42  Aligned_cols=89  Identities=22%  Similarity=0.368  Sum_probs=73.6

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeCC-CCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695        149 RPITPDVTAEENENVTLSCRATGS-PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      ...+.++.+.+|+.+.|.|.+.|. |.|.+.|++++..+..         ..++.+....+...|.|.+++.+|+|.|.|
T Consensus         5 ~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~---------~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   75 (97)
T 2bk8_A            5 SGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLEN---------SEKYEITYEDGVAILYVKDITKLDDGTYRC   75 (97)
T ss_dssp             ECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCS---------SSSEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             eccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcC---------CCCEEEEEcCCeEEEEEecCChhhCeEEEE
Confidence            345678999999999999999997 9999999999876642         123333334455689999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEee
Q psy12695        228 RAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       228 ~a~n~~g~~~~~~~l~v~~  246 (369)
                      .|.|..|.....+.|.|..
T Consensus        76 ~a~n~~g~~~~~~~l~V~~   94 (97)
T 2bk8_A           76 KVVNDYGEDSSYAELFVKG   94 (97)
T ss_dssp             EEECSSCEEEEEEEEEETT
T ss_pred             EEECCCCeEeEEEEEEEEe
Confidence            9999999999988888864

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=4.4e-13  Score=101.88  Aligned_cols=94  Identities=18%  Similarity=0.267  Sum_probs=75.3

Q ss_pred             CCCccC---CCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCC
Q psy12695        145 SPNIRP---ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD  221 (369)
Q Consensus       145 ~p~i~~---~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D  221 (369)
                      .|.+..   .+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+..          .++.+........|.|.+++.+|
T Consensus        21 ~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~----------~~~~~~~~~~~~~L~i~~~~~~D   90 (118)
T 2e7c_A           21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT----------SRVHVRTSDFDTVFFVRQAARSD   90 (118)
T ss_dssp             EEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCC----------SSCEEEECSSEEEEEESSCCTTT
T ss_pred             CCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCC----------CcEEEEECCCeEEEEECCCChhc
Confidence            455532   34678899999999999999999999999999977641          11222233445679999999999


Q ss_pred             CEEEEEEEEeCCceEEEEEEEEEeecC
Q psy12695        222 SGIYTCRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       222 ~G~Y~C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      +|.|+|.|.|..|.....+.|.|...|
T Consensus        91 ~G~Y~C~a~N~~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           91 SGEYELSVQIENMKDTATIRIRVVEKA  117 (118)
T ss_dssp             CEEEEEEEECSSCEECCEEEEEEECCC
T ss_pred             CEEEEEEEEeCCCeEEEEEEEEEEcCC
Confidence            999999999999999999999987654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.46  E-value=1.3e-13  Score=120.86  Aligned_cols=105  Identities=29%  Similarity=0.464  Sum_probs=93.9

Q ss_pred             CCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccccc
Q psy12695         37 STCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILEL  113 (369)
Q Consensus        37 ~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L  113 (369)
                      ..|.|...  .+.++|++++|+.+|..+|.+++.|+|++|+|.   +.+|.++++|++|+|++|+|+.+++..|..+++|
T Consensus        10 ~~C~c~~~--~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L   87 (270)
T 2o6q_A           10 GVCSCNNN--KNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL   87 (270)
T ss_dssp             CSBEEETT--TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC
T ss_pred             CCCEeCCC--CCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCC
Confidence            46899742  468999999999999999999999999999965   5689999999999999999999999999999999


Q ss_pred             ccccccccceecccCCcccccCcCcccccc
Q psy12695        114 RELKLSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       114 ~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      +.|+|++|.|+.++...|..+++|...++.
T Consensus        88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           88 ETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            999999999999999999888887665543

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.45  E-value=6.1e-14  Score=104.52  Aligned_cols=92  Identities=25%  Similarity=0.461  Sum_probs=75.9

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .|.+...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+..         ..++.+......+.|.|.+++.+|+|.
T Consensus        14 ~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~---------~~~~~~~~~~~~~~L~I~~v~~~D~G~   84 (106)
T 1nct_A           14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLST---------SARHQVTTTKYKSTFEISSVQASDEGN   84 (106)
T ss_dssp             CCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTT---------CSSEEEEECSSEEEEEECCCCSSCCSE
T ss_pred             CCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCC---------CCCEEEEECCCEEEEEECcCCchhCEE
Confidence            46677778899999999999999999999999999998865532         123333334446789999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEe
Q psy12695        225 YTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      |+|.|.|..|.....+.|.|.
T Consensus        85 Y~C~a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           85 YSVVVENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             EEECCBCSSCBCCEEEEEEEC
T ss_pred             EEEEEEeCCCeEEEEEEEEEE
Confidence            999999999998888888774

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.45  E-value=8.4e-13  Score=98.35  Aligned_cols=102  Identities=21%  Similarity=0.278  Sum_probs=75.0

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEE-eecceeeEEEcccCCCCCE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK-TINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G  223 (369)
                      .|.+...+.++.+.+|++++|.|.+.+.|.+.+.|++++............ ...++.+. .......|.|.+++.+|+|
T Consensus         6 ~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~L~I~~v~~~D~G   84 (108)
T 3m45_A            6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKAL-RDNRIELVRASWHELSISVSDVSLSDEG   84 (108)
T ss_dssp             --CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECS-CCTTEEEEEESSSEEEEEECSCCGGGCE
T ss_pred             CCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCccc-ccCcEEEeecCCCcEEEEECCCChhHCe
Confidence            456666788999999999999999999999999999987622211111111 11233322 2234678999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEeecC
Q psy12695        224 IYTCRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      .|.|.+.| .|.....+.|.|..+|
T Consensus        85 ~Y~C~~~n-~~~~~~~~~L~V~~~P  108 (108)
T 3m45_A           85 QYTCSLFT-MPVKTSKAYLTVLGVP  108 (108)
T ss_dssp             EEEEEECS-SSCEEEEEEEEEECCC
T ss_pred             EEEEEEEc-CCCcEEEEEEEEEcCC
Confidence            99999999 8888889999887653

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=3.6e-13  Score=99.12  Aligned_cols=91  Identities=18%  Similarity=0.180  Sum_probs=72.3

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .|.+...+.++.+.+|+.+.|.|.+  .|.|.+.|++++..+...         .++.+........|.|.+++.+|+|.
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~---------~r~~i~~~~~~~~L~I~~v~~~D~G~   75 (100)
T 2yuz_A            7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQES---------DRLKVVQKGRIHKLVIANALTEDEGD   75 (100)
T ss_dssp             CCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCC---------SSEEEEECSSEEEEEESSCCGGGCSE
T ss_pred             CCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCC---------CcEEEEEeCCEEEEEECCCChhhCEE
Confidence            4566777889999999999999999  788999999999876531         23333333445689999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeecC
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      |+|.|.|.  ..+..+.|.|..+|
T Consensus        76 Y~C~a~N~--~~~~~a~L~V~~~P   97 (100)
T 2yuz_A           76 YVFAPDAY--NVTLPAKVHVISGP   97 (100)
T ss_dssp             EEEEESSS--CCCEEEEEEEECCS
T ss_pred             EEEEEcCC--CeeEEEEEEEeCCC
Confidence            99999998  44566778887665

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=2.8e-13  Score=99.68  Aligned_cols=92  Identities=28%  Similarity=0.460  Sum_probs=74.6

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .|.+...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+....        .++..   ...+.|.|.+++.+|+|.
T Consensus         8 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~--------~~~~~---~~~~~L~i~~v~~~d~G~   76 (100)
T 2edj_A            8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRD--------PRATI---QEQGTLQIKNLRISDTGT   76 (100)
T ss_dssp             SCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSC--------SSCEE---CTTCCEEEESCCTTTCCE
T ss_pred             CCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCC--------CCEEE---cCCCEEEEccCCcccCEE
Confidence            4556667788899999999999999999999999999987664211        11111   234579999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeec
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKV  247 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~  247 (369)
                      |+|.|.|..|.....+.|.|..+
T Consensus        77 Y~C~a~n~~g~~~~~~~l~V~~~   99 (100)
T 2edj_A           77 YTCVATSSSGETSWSAVLDVTES   99 (100)
T ss_dssp             EEEEEECSSCCCBCCEEEEEESC
T ss_pred             EEEEEEcCCCCEEEEEEEEEecC
Confidence            99999999999888888888764

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=1.9e-13  Score=100.43  Aligned_cols=88  Identities=27%  Similarity=0.539  Sum_probs=72.0

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +|.+...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+....         .   ........|.|.+++.+|+|.
T Consensus        11 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~---------~---~~~~~~~~L~i~~v~~~D~G~   78 (99)
T 2yr3_A           11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYAR---------S---TCEAGVAELHIQDALPEDHGT   78 (99)
T ss_dssp             EEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCC---------C---EEETTEEEEEECSCCTTCCBC
T ss_pred             CCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccc---------e---EeeCCeEEEEECCCChhhCEE
Confidence            4556666788899999999999999999999999999887654211         1   112345789999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEE
Q psy12695        225 YTCRAKNGAGEVFTNISLNV  244 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v  244 (369)
                      |.|.|.|..|.....+.|.|
T Consensus        79 Y~C~a~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           79 YTCLAENALGQVSCSAWVTV   98 (99)
T ss_dssp             EEEEEECSSCEEEEECCEEE
T ss_pred             EEEEEEECCCeEEEEEEEEE
Confidence            99999999999888887776

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.44  E-value=4.3e-13  Score=100.10  Aligned_cols=94  Identities=27%  Similarity=0.423  Sum_probs=67.8

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....         ++.  .....+.|.|.+++.+|+|.
T Consensus        10 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---------~~~--~~~~~~~L~i~~v~~~D~G~   78 (108)
T 3kvq_A           10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS---------GIV--LKDGNRNLTIRRVRKEDEGL   78 (108)
T ss_dssp             -CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBT---------TEE--EETTTTEEEECSCCGGGCEE
T ss_pred             CCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCC---------CeE--EeCCCcEEEEeecCcccCEE
Confidence            4677777888999999999999999999999999999987654311         111  12345689999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      |.|.|.|..|.....+.|.|...+.
T Consensus        79 Y~C~a~n~~g~~~~~~~l~V~~~~~  103 (108)
T 3kvq_A           79 YTCQACSVLGCAKVEAFFIIEGAQE  103 (108)
T ss_dssp             EEEEEC----CEEEEEEEEEEC---
T ss_pred             EEEEEEeCCCceEEEEEEEEeCCCc
Confidence            9999999999999999999987653

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.44  E-value=7.6e-13  Score=96.37  Aligned_cols=86  Identities=19%  Similarity=0.310  Sum_probs=70.5

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +|.+...+..+.+.+|+.+.|.|.+.|.| |.+.|++++..+...         .++..    ..+.|.|.+++.+|+|.
T Consensus         9 pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~---------~~~~~----~~~~L~i~~~~~~D~G~   74 (95)
T 2ckn_A            9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVES---------NRTRI----TGEEVEVRDSIPADSGL   74 (95)
T ss_dssp             SCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCC---------SSEEE----CSSEEEESSCCGGGSEE
T ss_pred             CCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCC---------CCEEE----eCCEEEECCCChHHCEE
Confidence            45666677889999999999999999998 899999988765421         12222    15689999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEE
Q psy12695        225 YTCRAKNGAGEVFTNISLNV  244 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v  244 (369)
                      |.|.|.|..|.....+.|.|
T Consensus        75 Y~C~a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           75 YACVTSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             EEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEeccCCCcEEEEEEEEE
Confidence            99999999999888888876

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=1.1e-13  Score=103.82  Aligned_cols=97  Identities=30%  Similarity=0.504  Sum_probs=78.0

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+....        .............|.|.+++.+|+|.
T Consensus         9 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~--------~~~~~~~~~~~~~L~i~~v~~~D~G~   80 (110)
T 2dm3_A            9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDS--------AHKMLVRENGVHSLIIEPVTSRDAGI   80 (110)
T ss_dssp             CCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCS--------SEEEEECTTSCEEEEESSCCGGGCSB
T ss_pred             CCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCC--------ceEEEEecCCeEEEEEeeCCcccCEE
Confidence            5667777888999999999999999999999999999887654211        11112222234689999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      |+|.|.|..|.....+.|.|...+.
T Consensus        81 Y~C~a~n~~g~~~~~~~l~V~~~p~  105 (110)
T 2dm3_A           81 YTCIATNRAGQNSFSLELVVAAKES  105 (110)
T ss_dssp             BCEEEECSSCEEEECCEEEEECCCC
T ss_pred             EEEEEECCCCEEEEEEEEEEeCCCC
Confidence            9999999999999999999987654

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.44  E-value=3.9e-13  Score=102.37  Aligned_cols=95  Identities=15%  Similarity=0.159  Sum_probs=71.8

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCC---CCCeEEEEeCCeEeeecccccccCCcceEEEEee------cceeeEEEcc
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGS---PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI------NSLSNLTIVA  216 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~---p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~L~I~~  216 (369)
                      |.+...|.++.+.+|+.++|.|.+.|.   |.|.|.|+|+.........      ..++.+...      .....|.|.+
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~------~~~~~~~~~~~~~~~~~~~~L~I~~   81 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKA------GKHLQLKETFERHSRVYTFEMQIIK   81 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHT------TSSEEEEEEEETTTTEEEEEEEECS
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCC------CceEEEccccccccccceEEEEEcc
Confidence            446667899999999999999999875   8999999996421110000      011222110      0247899999


Q ss_pred             cCCCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy12695        217 VTMSDSGIYTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       217 v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      +..+|+|.|+|.|.|..|..++.+.|.|..
T Consensus        82 v~~~DaG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           82 AKDNFAGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             CCTTSCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             CCcccCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            999999999999999999999999999998

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.43  E-value=2.4e-13  Score=122.70  Aligned_cols=106  Identities=25%  Similarity=0.452  Sum_probs=93.5

Q ss_pred             cCcCCCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcc
Q psy12695         30 QVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHI  106 (369)
Q Consensus        30 ~~~~~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~  106 (369)
                      .....||..|.|.    .+.++|++++++.+|..++..++.|+|++|+|.   +.+|.++++|++|+|++|+|+.+.+.+
T Consensus        20 ~~~~~cp~~c~c~----l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (330)
T 1xku_A           20 PMGPVCPFRCQCH----LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA   95 (330)
T ss_dssp             --CCCCCTTCEEE----TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred             cccCCCCCCCcCC----CeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH
Confidence            3456899999998    458999999999999999999999999999965   568999999999999999999999999


Q ss_pred             cccccccccccccccceecccCCcccccCcCcc
Q psy12695        107 LDSILELRELKLSGNPIQKITHEAFINVPKLNL  139 (369)
Q Consensus       107 f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~  139 (369)
                      |..+++|+.|+|++|.|+.++...+.++..|..
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l  128 (330)
T 1xku_A           96 FAPLVKLERLYLSKNQLKELPEKMPKTLQELRV  128 (330)
T ss_dssp             TTTCTTCCEEECCSSCCSBCCSSCCTTCCEEEC
T ss_pred             hcCCCCCCEEECCCCcCCccChhhcccccEEEC
Confidence            999999999999999999999887766555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.43  E-value=2.3e-13  Score=122.98  Aligned_cols=105  Identities=25%  Similarity=0.435  Sum_probs=92.5

Q ss_pred             cCcCCCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcc
Q psy12695         30 QVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHI  106 (369)
Q Consensus        30 ~~~~~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~  106 (369)
                      .....||..|.|.    .+.++|++++++.+|..++..++.|+|++|+|.   +.+|.++++|++|+|++|+|+.+.+.+
T Consensus        22 ~~~~~cp~~c~c~----l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   97 (332)
T 2ft3_A           22 TYSAMCPFGCHCH----LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA   97 (332)
T ss_dssp             ---CCCCSSCEEE----TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred             cccCCCCCCCccc----CCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH
Confidence            3456899999998    457999999999999999999999999999965   678999999999999999999999999


Q ss_pred             cccccccccccccccceecccCCcccccCcCc
Q psy12695        107 LDSILELRELKLSGNPIQKITHEAFINVPKLN  138 (369)
Q Consensus       107 f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~  138 (369)
                      |..+++|+.|+|++|.|+.++...+.++..|+
T Consensus        98 ~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~  129 (332)
T 2ft3_A           98 FSPLRKLQKLYISKNHLVEIPPNLPSSLVELR  129 (332)
T ss_dssp             STTCTTCCEEECCSSCCCSCCSSCCTTCCEEE
T ss_pred             hhCcCCCCEEECCCCcCCccCccccccCCEEE
Confidence            99999999999999999999988875555543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.42  E-value=1.9e-13  Score=133.60  Aligned_cols=107  Identities=29%  Similarity=0.351  Sum_probs=91.7

Q ss_pred             CCCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccc
Q psy12695         33 AECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDS  109 (369)
Q Consensus        33 ~~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~  109 (369)
                      ..|+..|.|...  ...++|.+.+++.+|..+|..++.|+|++|+|.   +.+|.++++|++|+|++|+|+.+.+.+|.+
T Consensus         2 ~~~~~~C~~~~~--~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~   79 (606)
T 3t6q_A            2 TSSDQKCIEKEV--NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS   79 (606)
T ss_dssp             ----CCCEEEET--TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTT
T ss_pred             ccccCceecccC--CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccC
Confidence            468899999753  458999999999999999999999999999955   678999999999999999999999999999


Q ss_pred             ccccccccccccceecccCCcccccCcCcccc
Q psy12695        110 ILELRELKLSGNPIQKITHEAFINVPKLNLED  141 (369)
Q Consensus       110 l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~  141 (369)
                      +++|+.|+|++|.++.+.+..|.++++|...+
T Consensus        80 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           80 QHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             ccccCeeeCCCCcccccChhhhcccccccEee
Confidence            99999999999999999888888877765443

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=1.1e-12  Score=99.74  Aligned_cols=94  Identities=29%  Similarity=0.398  Sum_probs=77.0

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .|.+...+..+.+.+|+.+.|.|.+.|.|.+.+.|++++..+...        ..++...   ..+.|.|.+++.+|+|.
T Consensus         8 pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~--------~~~~~~~---~~~~L~i~~v~~~D~G~   76 (118)
T 2eo9_A            8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQ--------DSRIKQL---ENGVLQIRYAKLGDTGR   76 (118)
T ss_dssp             SCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTT--------STTEEEE---ETTEEEEESCCGGGCCC
T ss_pred             CCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCC--------CCeEEEc---cCCEEEEccCCcCCCEE
Confidence            567777788899999999999999999999999999988765421        1122221   24589999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      |+|.|.|..|.....+.|.|...+.
T Consensus        77 Y~C~a~n~~g~~~~~~~l~V~~~~~  101 (118)
T 2eo9_A           77 YTCIASTPSGEATWSAYIEVQEFGV  101 (118)
T ss_dssp             EEEEEECSSCEEEEECCEEEECCSC
T ss_pred             EEEEEEcCCCcEEEEEEEEEEeCCC
Confidence            9999999999999999999987654

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.42  E-value=1.6e-12  Score=94.28  Aligned_cols=87  Identities=15%  Similarity=0.093  Sum_probs=66.5

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .|.+...+.++.+.+|+.++|.|.+.+ +.+.+.|++++..+...         .++.+........|.|.+++.+|+|.
T Consensus         5 ~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~---------~~~~i~~~g~~~~L~I~~v~~~D~G~   74 (93)
T 1waa_A            5 LIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAAS---------PDCEIIEDGKKHILILHNCQLGMTGE   74 (93)
T ss_dssp             CCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCB---------TTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCC---------CCEEEEEECCEEEEEECCCChhhCEE
Confidence            355666778899999999999999986 45789999999876531         23333344455689999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEe
Q psy12695        225 YTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      |+|.|.|.    ...+.|.|.
T Consensus        75 Y~C~a~n~----~~sa~L~V~   91 (93)
T 1waa_A           75 VSFQAANT----KSAANLKVK   91 (93)
T ss_dssp             EEEEETTE----EEEEEEEEE
T ss_pred             EEEEECCC----cEEEEEEEE
Confidence            99999874    345566664

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=3.8e-13  Score=101.28  Aligned_cols=95  Identities=18%  Similarity=0.222  Sum_probs=71.0

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCC---CCCeEEEEeCCeEeeecccccccCCcceEEEEee------cceeeEEEccc
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGS---PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI------NSLSNLTIVAV  217 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~---p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~L~I~~v  217 (369)
                      .+...|.++.+.+|+.++|.|.+.|.   |.|.|.|+++.........      ..++.+...      .....|.|.++
T Consensus        14 ~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~------~~~~~~~~~~~~~~~~~~~~L~I~~v   87 (118)
T 2edn_A           14 VFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKS------GARFSFKESHNSASNVYTVELHIGKV   87 (118)
T ss_dssp             SCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCST------TSSCEEEEEECSSSCEEEEEEEESSC
T ss_pred             eEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCC------ccEEEeccccccccccceEEEEEeeC
Confidence            45566889999999999999999875   7899999996421111000      011111110      12578999999


Q ss_pred             CCCCCEEEEEEEEeCCceEEEEEEEEEeec
Q psy12695        218 TMSDSGIYTCRAKNGAGEVFTNISLNVIKV  247 (369)
Q Consensus       218 ~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~  247 (369)
                      ..+|+|.|.|.+.|..|..++.+.|.|..+
T Consensus        88 ~~~D~G~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           88 VLGDRGYYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             CTTTCSCEEEEEECSSCEEEEEECCEEECC
T ss_pred             ChhhCEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence            999999999999999999999999999764

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.41  E-value=1.5e-12  Score=103.98  Aligned_cols=97  Identities=25%  Similarity=0.422  Sum_probs=77.1

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEe-ecceeeEEEcccCCCCCE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT-INSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G  223 (369)
                      .|.+...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+...         .++.+.. ......|.|.+++..|+|
T Consensus        41 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~---------~~~~~~~~~~~~~~L~I~~v~~~D~G  111 (154)
T 1fhg_A           41 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES---------RHFQIDYDEEGNCSLTISEVCGDDDA  111 (154)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCS---------SSEEEEECTTCEEEEEESSCCGGGCE
T ss_pred             CCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCC---------CcEEEEECCCCeEEEEECCCChhcCE
Confidence            455666677899999999999999999999999999999776431         1222222 123468999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEeecCCc
Q psy12695        224 IYTCRAKNGAGEVFTNISLNVIKVETA  250 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v~~~~~~  250 (369)
                      .|+|.|.|..|.....+.|.|...+..
T Consensus       112 ~Y~C~a~N~~G~~~~~~~l~V~~~p~~  138 (154)
T 1fhg_A          112 KYTCKAVNSLGEATCTAELLVETMGKE  138 (154)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECC---
T ss_pred             EEEEEEEECCCeEEEEEEEEEeCcCcC
Confidence            999999999999999999999877643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.40  E-value=2e-13  Score=121.84  Aligned_cols=102  Identities=30%  Similarity=0.498  Sum_probs=84.5

Q ss_pred             CCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccC--Cccccc
Q psy12695         35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVP--SHILDS  109 (369)
Q Consensus        35 cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~--~~~f~~  109 (369)
                      ||..|.|.+    +.++|++++++.+|..+|..++.|+|++|+|.   ...|.++++|+.|+|++|+|+.+.  +..+.+
T Consensus         1 CP~~C~C~~----~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~   76 (306)
T 2z66_A            1 CPSRCSCSG----TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG   76 (306)
T ss_dssp             CCTTCEEET----TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS
T ss_pred             CcCCCeeCC----CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccc
Confidence            999999995    47999999999999999999999999999965   567899999999999999998763  345667


Q ss_pred             ccccccccccccceecccCCcccccCcCcccc
Q psy12695        110 ILELRELKLSGNPIQKITHEAFINVPKLNLED  141 (369)
Q Consensus       110 l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~  141 (369)
                      +++|+.|+|++|.+..++.. |..+++|...+
T Consensus        77 ~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~  107 (306)
T 2z66_A           77 TTSLKYLDLSFNGVITMSSN-FLGLEQLEHLD  107 (306)
T ss_dssp             CSCCCEEECCSCSEEEEEEE-EETCTTCCEEE
T ss_pred             ccccCEEECCCCccccChhh-cCCCCCCCEEE
Confidence            88888888888888887653 66666655443

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.39  E-value=1.3e-12  Score=92.72  Aligned_cols=81  Identities=16%  Similarity=0.282  Sum_probs=62.0

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ..++.+.+|+.+.|.|.+.| |.|.|.|++++..+...         .++.+........|.|.+++.+|+|.|.|.|.|
T Consensus         3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~---------~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   72 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQ---------GRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ   72 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCC---------SSEEEEECSSCEEEEESSCSSTTCEEEEEECTT
T ss_pred             CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEcccc---------ccEEEeecCCeEEEEecCCCCcccEEEEEEECC
Confidence            35788999999999999976 88999999999887532         233333344456899999999999999999866


Q ss_pred             CCceEEEEEEEEEee
Q psy12695        232 GAGEVFTNISLNVIK  246 (369)
Q Consensus       232 ~~g~~~~~~~l~v~~  246 (369)
                      .    ...+.|.|..
T Consensus        73 ~----~~~a~l~V~e   83 (84)
T 2lu7_A           73 D----SRIFLVSVEE   83 (84)
T ss_dssp             T----CEEEEEEECC
T ss_pred             E----EEEEEEEEEC
Confidence            4    3455666643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.39  E-value=3.9e-13  Score=130.30  Aligned_cols=95  Identities=25%  Similarity=0.257  Sum_probs=77.6

Q ss_pred             cCCCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccc
Q psy12695         32 FAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILD  108 (369)
Q Consensus        32 ~~~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~  108 (369)
                      ...|+..|.|..   .+.++|++++|+.||..+|..++.|+|++|+|.   +.+|.++++|+.|+|++|+|+.+++++|.
T Consensus        21 ~~~~~~~~~~~~---~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~   97 (562)
T 3a79_B           21 IVGSMTPFSNEL---ESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL   97 (562)
T ss_dssp             ---------------CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT
T ss_pred             HhccccccccCC---CcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC
Confidence            345566677773   368999999999999999999999999999965   57899999999999999999999999999


Q ss_pred             cccccccccccccceecccCC
Q psy12695        109 SILELRELKLSGNPIQKITHE  129 (369)
Q Consensus       109 ~l~~L~~L~L~~N~l~~~~~~  129 (369)
                      ++++|+.|+|++|.|+.++..
T Consensus        98 ~l~~L~~L~Ls~N~l~~lp~~  118 (562)
T 3a79_B           98 FNQDLEYLDVSHNRLQNISCC  118 (562)
T ss_dssp             TCTTCCEEECTTSCCCEECSC
T ss_pred             CCCCCCEEECCCCcCCccCcc
Confidence            999999999999999998876

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.39  E-value=4.4e-12  Score=93.80  Aligned_cols=87  Identities=18%  Similarity=0.269  Sum_probs=66.2

Q ss_pred             eccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEE-EeecceeeEEEcccCCCCCEEEEEEEEeCCce
Q psy12695        157 AEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYII-KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE  235 (369)
Q Consensus       157 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~  235 (369)
                      ...|+.+.|.|.+.|.|.|.+.|++++..+.......     ..+.. ......+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus        13 ~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~-----~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   87 (103)
T 1wwb_X           13 PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYIC-----TKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK   87 (103)
T ss_dssp             CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEE-----EEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCE
T ss_pred             ceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEe-----EEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCc
Confidence            3568899999999999999999999998775321100     00000 00112456999999999999999999999999


Q ss_pred             EEEEEEEEEeecC
Q psy12695        236 VFTNISLNVIKVE  248 (369)
Q Consensus       236 ~~~~~~l~v~~~~  248 (369)
                      ....+.|.|...|
T Consensus        88 ~~~~~~l~V~~~P  100 (103)
T 1wwb_X           88 DEKQISAHFMGWP  100 (103)
T ss_dssp             EEEEEEECCSCCC
T ss_pred             EeEEEEEEECCCC
Confidence            9999999887665

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.39  E-value=3.5e-12  Score=97.00  Aligned_cols=86  Identities=19%  Similarity=0.244  Sum_probs=67.5

Q ss_pred             ccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEe-----ecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT-----INSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ..+..+.|.|.+.|.|.|.|+|+++|..+......       ......     ....+.|.|.++...|+|.|+|.|.|.
T Consensus        13 ~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~-------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~   85 (126)
T 1he7_A           13 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFI-------FTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP   85 (126)
T ss_dssp             CCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSE-------EEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEET
T ss_pred             ccCccEEEEEEEeeeCCCeEEEEECCEECCCCCce-------eEEEeeccccccccceEEEECcCCCCCCEEEEEEEEEC
Confidence            46788999999999999999999999877532210       001110     012468999999999999999999999


Q ss_pred             CceEEEEEEEEEeecCCc
Q psy12695        233 AGEVFTNISLNVIKVETA  250 (369)
Q Consensus       233 ~g~~~~~~~l~v~~~~~~  250 (369)
                      .|...+++.|.|...|..
T Consensus        86 ~G~~~~t~~l~v~~~P~~  103 (126)
T 1he7_A           86 FGQASASIMAAFMDNPFE  103 (126)
T ss_dssp             TEEEEEEEEECCCSCTTS
T ss_pred             CCeEEEEEEEEEEcCCCC
Confidence            999999999998877654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.39  E-value=4.8e-13  Score=126.13  Aligned_cols=105  Identities=21%  Similarity=0.320  Sum_probs=86.3

Q ss_pred             CCCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCccc-ccCCcccc
Q psy12695         33 AECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQ-FVPSHILD  108 (369)
Q Consensus        33 ~~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~  108 (369)
                      ..||..|.|.    ...++|.+++++.+|. +|..+++|+|++|+|.   +.+|.++++|++|+|++|.+. .+++.+|.
T Consensus         2 ~p~~~~c~~~----~~~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~   76 (455)
T 3v47_A            2 DPGTSECSVI----GYNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR   76 (455)
T ss_dssp             -----CCEEE----TTEEECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTT
T ss_pred             CCccceeEEE----ccccCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccc
Confidence            4689999998    4579999999999999 9999999999999965   668889999999999999886 68888899


Q ss_pred             cccccccccccccceecccCCcccccCcCccccc
Q psy12695        109 SILELRELKLSGNPIQKITHEAFINVPKLNLEDF  142 (369)
Q Consensus       109 ~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~  142 (369)
                      ++++|+.|+|++|.++.+.+..|.++++|...++
T Consensus        77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  110 (455)
T 3v47_A           77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL  110 (455)
T ss_dssp             TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence            9999999999999998888888888777655443

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.39  E-value=7.8e-13  Score=97.22  Aligned_cols=84  Identities=27%  Similarity=0.424  Sum_probs=67.3

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+.......      .+  ......+.|.|.+++.+|+|.|.|.|.|.
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~------~~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   87 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG------GY--KVRNQHWSLIMESVVPSDKGNYTCVVENE   87 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTT------CC--EEEGGGTEEEECSCCGGGCEEEEEEEEET
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccc------cE--EEecCeEEEEEccCCcCCCEEEEEEEEeC
Confidence            46778999999999999999999999999987765322110      01  12233458999999999999999999999


Q ss_pred             CceEEEEEEEEE
Q psy12695        233 AGEVFTNISLNV  244 (369)
Q Consensus       233 ~g~~~~~~~l~v  244 (369)
                      .|.....+.|.|
T Consensus        88 ~g~~~~~~~l~V   99 (100)
T 3caf_A           88 YGSINHTYHLDV   99 (100)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            999888888876

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.38  E-value=9.2e-13  Score=109.33  Aligned_cols=95  Identities=28%  Similarity=0.501  Sum_probs=85.5

Q ss_pred             CceEEEecCCCCCccCCCCC--CCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQLD--VGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG  120 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~~~--~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  120 (369)
                      ..+.++.++|.++.+|..+.  ..++.|+|++|+|.   +.+|.++++|+.|+|++|+|+.+++.+|.++++|+.|+|++
T Consensus        32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  111 (193)
T 2wfh_A           32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG  111 (193)
T ss_dssp             TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence            35789999999999997663  57999999999965   67899999999999999999999999999999999999999


Q ss_pred             cceecccCCcccccCcCccc
Q psy12695        121 NPIQKITHEAFINVPKLNLE  140 (369)
Q Consensus       121 N~l~~~~~~~f~~l~~l~~~  140 (369)
                      |.|+.++.+.|..+++|...
T Consensus       112 N~l~~~~~~~~~~l~~L~~L  131 (193)
T 2wfh_A          112 NDISVVPEGAFNDLSALSHL  131 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEE
T ss_pred             CCCCeeChhhhhcCccccEE
Confidence            99999999999988876543

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.38  E-value=4.6e-12  Score=97.09  Aligned_cols=99  Identities=17%  Similarity=0.312  Sum_probs=73.1

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEE-eecceeeEEEcccCCCCCEEEEE
Q psy12695        149 RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK-TINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      ...+..+.+.+|++++|.|.+.+.|.+.+.|+++++.+....... .....++.+. .......|.|.+++.+|+|.|+|
T Consensus         5 ~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   83 (124)
T 3rbg_A            5 TNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYP-VLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKC   83 (124)
T ss_dssp             CCSEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEE-CSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             cCCCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccc-cccCCcEEEEeCCCCEEEEEECCCChHHCEEEEE
Confidence            344567889999999999999999999999998765433211110 0112233332 23346799999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEeecCC
Q psy12695        228 RAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       228 ~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      .+.|. |.....+.|.|...|.
T Consensus        84 ~a~n~-g~~~~~~~l~V~~~P~  104 (124)
T 3rbg_A           84 LHYSD-SVSTKEVKVIVLATMK  104 (124)
T ss_dssp             EEESS-SEEEEEEEEEEECC--
T ss_pred             EEEcC-CCCcEEEEEEEEeCCC
Confidence            99999 9999999999987764

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.36  E-value=2e-12  Score=93.28  Aligned_cols=82  Identities=18%  Similarity=0.310  Sum_probs=67.0

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      +.+...|....+.+|+.+.|.|.+.|.|.|.+.|++++..+...                  ....|.|.+++.+|+|.|
T Consensus         4 ~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~------------------~~~~L~i~~v~~~d~G~Y   65 (91)
T 3bfo_A            4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE------------------TKKLYMVPYVDLEHQGTY   65 (91)
T ss_dssp             CEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTC------------------CSSEEEESSCCGGGCEEE
T ss_pred             eEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcC------------------CCCeEEECCCCHHhCEEE
Confidence            34555677888999999999999999999999999998765421                  134799999999999999


Q ss_pred             EEEEEeCCceEE-EEEEEEEe
Q psy12695        226 TCRAKNGAGEVF-TNISLNVI  245 (369)
Q Consensus       226 ~C~a~n~~g~~~-~~~~l~v~  245 (369)
                      .|.|.|..|... ..+.|.|.
T Consensus        66 ~C~a~n~~g~~~s~~~~l~V~   86 (91)
T 3bfo_A           66 WCHVYNDRDSQDSKKVEIIID   86 (91)
T ss_dssp             EEEEECSSCEEECCCEEEEEC
T ss_pred             EEEEEcCCCCEEeeeEEEEEe
Confidence            999999999754 44666664

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.36  E-value=8.4e-12  Score=92.22  Aligned_cols=90  Identities=21%  Similarity=0.231  Sum_probs=69.8

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      +...+.++.+.+|+.++|.|.+.+ |.+.+.|++++..+.....       .++.+........|.|.+++.+|+|.|+|
T Consensus        10 ~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~-------~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C   81 (103)
T 1x44_A           10 VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPK-------SRYRIRVEGKKHILIIEGATKADAAEYSV   81 (103)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTT-------CSEEEEEETTEEEEEEEEECTTTCSEEEE
T ss_pred             eeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCc-------eEEEEEEcCCEEEEEECCCCcccCEEEEE
Confidence            566678899999999999999988 7799999999987653211       13344444456789999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEeecCC
Q psy12695        228 RAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       228 ~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      .|.|    ....+.|.|...+.
T Consensus        82 ~a~n----~~~~~~l~V~~~p~   99 (103)
T 1x44_A           82 MTTG----GQSSAKLSVDLKSG   99 (103)
T ss_dssp             EETT----EEEEEEEEEECCCS
T ss_pred             EECC----CcEEEEEEEeCCCC
Confidence            9987    46667777776553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.36  E-value=1.3e-12  Score=114.84  Aligned_cols=104  Identities=35%  Similarity=0.416  Sum_probs=92.9

Q ss_pred             CCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccc
Q psy12695         38 TCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELR  114 (369)
Q Consensus        38 ~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~  114 (369)
                      .|.|...  ...++|.+.+++.+|..+|.+++.|+|++|+|.   +.+|.++++|+.|+|++|+|+.+++.+|..+++|+
T Consensus         2 ~C~~~~~--~~~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~   79 (276)
T 2z62_A            2 PCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS   79 (276)
T ss_dssp             CSEEEET--TTEEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             CceeccC--CceEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCC
Confidence            4777653  357999999999999999999999999999965   56899999999999999999999999999999999


Q ss_pred             cccccccceecccCCcccccCcCcccccc
Q psy12695        115 ELKLSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       115 ~L~L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      .|+|++|.|+.+++..|.++++|...++.
T Consensus        80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           80 TLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             EEECCCCccCccChhhhcCCccccEEECC
Confidence            99999999999999999988887665543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.35  E-value=1.4e-12  Score=115.47  Aligned_cols=106  Identities=23%  Similarity=0.303  Sum_probs=82.0

Q ss_pred             CCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCC----------
Q psy12695         38 TCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPS----------  104 (369)
Q Consensus        38 ~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~----------  104 (369)
                      .|.|......+.++|++++|+.+|..+|..++.|+|++|+|.   +.+|.++++|+.|+|++|+|+.++.          
T Consensus         3 ~C~~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L   82 (290)
T 1p9a_G            3 ICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL   82 (290)
T ss_dssp             SSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred             cccccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence            478876666789999999999999999999999999999954   4566666665555555555544332          


Q ss_pred             -----------cccccccccccccccccceecccCCcccccCcCcccccc
Q psy12695        105 -----------HILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       105 -----------~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                                 ..|..+++|+.|+|++|.|+.++++.|.++++|...++.
T Consensus        83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~  132 (290)
T 1p9a_G           83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK  132 (290)
T ss_dssp             ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT
T ss_pred             ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC
Confidence                       246778889999999999999998889888887665544

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=7.3e-12  Score=92.68  Aligned_cols=90  Identities=19%  Similarity=0.324  Sum_probs=69.1

Q ss_pred             CCCccCCCCC---eeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCC
Q psy12695        145 SPNIRPITPD---VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD  221 (369)
Q Consensus       145 ~p~i~~~~~~---~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D  221 (369)
                      .|.+...+..   +.+.+|+.++|.|.+.+.|.+ +.|++++..+...         .++.+........|.|.+++.+|
T Consensus         7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~---------~~~~~~~~~~~~~L~I~~~~~~D   76 (104)
T 2e6p_A            7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEES---------ELLVVKMDGRKHRLILPEAKVQD   76 (104)
T ss_dssp             SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCB---------TTBEEEEETTEEEEEESSCCTTT
T ss_pred             CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCC---------CCEEEEeCCCEEEEEECCCChhh
Confidence            4556666666   789999999999999999999 9999999876432         12233334455689999999999


Q ss_pred             CEEEEEEEEeCCceEEEEEEEEEeecC
Q psy12695        222 SGIYTCRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       222 ~G~Y~C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      +|.|.|.+.|..+    .+.|.|..++
T Consensus        77 ~G~Y~C~a~n~~~----~~~l~V~~~P   99 (104)
T 2e6p_A           77 SGEFECRTEGVSA----FFGVTVQDPS   99 (104)
T ss_dssp             CEEEEEECSSCCC----CEEEEEECCC
T ss_pred             CEEEEEEECCceE----EEEEEEcCCC
Confidence            9999999999754    4566666554

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=5.3e-12  Score=93.29  Aligned_cols=91  Identities=22%  Similarity=0.371  Sum_probs=70.7

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +|.+...+.++.+.+|+.+.|.|.+.+ |.+.+.|++++..+..         ..++.+........|.|.+++.+|+|.
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~---------~~~~~~~~~~~~~~L~I~~v~~~D~G~   77 (103)
T 2edf_A            8 PAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRK---------SQKYDVVCEGTMAMLVIRGASLKDAGE   77 (103)
T ss_dssp             CCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCC---------SSSEEEEEETTEEEEEESSCCTTTCSE
T ss_pred             CcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccC---------CCCEEEEECCCEEEEEECCCCcccCEE
Confidence            355556678899999999999999997 8889999999876642         123344444445689999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      |.|.|.|    ....+.|.|...+.
T Consensus        78 Y~C~a~n----~~~~~~l~V~~~p~   98 (103)
T 2edf_A           78 YTCEVEA----SKSTASLHVEEKAS   98 (103)
T ss_dssp             EEEECSS----CEEEEEEEECCCSS
T ss_pred             EEEEEcc----CCcEEEEEEeCCCC
Confidence            9999999    35667788876654

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=6.2e-12  Score=92.23  Aligned_cols=85  Identities=20%  Similarity=0.322  Sum_probs=68.6

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      .+..+.+.+|+.++|.|.+.|.| |.+.|++++..+....         ++.+    ....|.|.+++.+|+|.|.|.|.
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~---------~~~~----~~~~L~i~~v~~~D~G~Y~C~a~   74 (99)
T 2cr3_A            9 EVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESN---------RTRI----TGEEVEVQDSVPADSGLYACVTS   74 (99)
T ss_dssp             CEEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCS---------SEEE----CSSEEEETTCCTTTCEEEEEEEE
T ss_pred             CCcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCC---------cEEE----ECCEEEEccCCHHHCEEEEEEEE
Confidence            45667889999999999999987 7999999986653211         2221    14589999999999999999999


Q ss_pred             eCCceEEEEEEEEEeecCC
Q psy12695        231 NGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       231 n~~g~~~~~~~l~v~~~~~  249 (369)
                      |..|.....+.|.|...+.
T Consensus        75 n~~g~~~~~~~l~V~~~~~   93 (99)
T 2cr3_A           75 SPSGSDTTYFSVNVSDALP   93 (99)
T ss_dssp             ETTEEEEEEEEECBCSCCS
T ss_pred             eCCceEEEEEEEEEecCCC
Confidence            9999998888888876654

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.33  E-value=1.7e-11  Score=89.16  Aligned_cols=86  Identities=20%  Similarity=0.256  Sum_probs=67.0

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      +.+...+.++.+.+|+.+.|.|.+ +.|.+.+.|++++..+...         .++.+........|.|.+++.+|+|.|
T Consensus         9 ~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~---------~~~~~~~~~~~~~L~I~~v~~~D~G~Y   78 (95)
T 2k1m_A            9 SAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISAS---------NKYGLATEGTRHTLTVREVGPADQGSY   78 (95)
T ss_dssp             CCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSS---------TTCEEEEETTEEEEEESSCCTTCCSEE
T ss_pred             CeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCC---------CcEEEEEcCCEEEEEEcCCCcccCEEE
Confidence            456666788999999999999999 8888999999998776421         123333334456899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEe
Q psy12695        226 TCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v~  245 (369)
                      .|.|    |.....+.|.|.
T Consensus        79 ~C~a----g~~~~~~~l~V~   94 (95)
T 2k1m_A           79 AVIA----GSSKVKFDLKVI   94 (95)
T ss_dssp             EEEE----TTEEEEEEEEEE
T ss_pred             EEEE----CCceEEEEEEEe
Confidence            9999    556666777664

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.33  E-value=3.3e-12  Score=91.99  Aligned_cols=76  Identities=20%  Similarity=0.310  Sum_probs=57.1

Q ss_pred             CccCCCCC--eeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        147 NIRPITPD--VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       147 ~i~~~~~~--~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .|..+..+  +.+.+|+.+.|.|.+.+ |.|.+.|+++|..+...         .++.+........|.|.+++.+|+|.
T Consensus         6 ~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~---------~~~~i~~~~~~~~L~I~~v~~~D~G~   75 (91)
T 2lvc_A            6 HIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEES---------DFVVLENEGPHRRLVLPATQPSDGGE   75 (91)
T ss_dssp             CCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCC---------SSCEEEEETTEEEEEESSCCGGGCSE
T ss_pred             EEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeee---------eeeeEEecCCeEEEEeCCCChhhcEE
Confidence            34444444  34578999999999966 88899999999876532         23333444555689999999999999


Q ss_pred             EEEEEEeC
Q psy12695        225 YTCRAKNG  232 (369)
Q Consensus       225 Y~C~a~n~  232 (369)
                      |.|.|.|.
T Consensus        76 Y~C~a~n~   83 (91)
T 2lvc_A           76 FQCVAGDE   83 (91)
T ss_dssp             EEEECSSC
T ss_pred             EEEEEcce
Confidence            99998775

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.32  E-value=1.5e-12  Score=118.67  Aligned_cols=134  Identities=24%  Similarity=0.328  Sum_probs=95.9

Q ss_pred             hhHHHHHHHHHHHHh--HhccCcCcCCCCCCCeecccC------------CceEEEecCCCCCccCCC-C--CCCccEEE
Q psy12695         10 VMMIYEWRVYIMVLV--CTGCLQVFAECPSTCECKWKG------------GKETVLCKAKNFTTIPEQ-L--DVGTQVLD   72 (369)
Q Consensus        10 ~~~~~~~~~~~~~~~--~~~~~~~~~~cp~~C~c~~~~------------~~~~~~c~~~~l~~ip~~-~--~~~~~~L~   72 (369)
                      .+++.+|.++++++.  ..........||..|.|....            ..+.++.++++++.+|.. +  ...++.|+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~   82 (353)
T 2z80_A            3 HTLWMVWVLGVIISLSKEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALV   82 (353)
T ss_dssp             ------------------------CCEECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             ceeHHHhhhhheeeccCccCCCccCCCCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEE
Confidence            344444443333322  223345677899988776432            356899999999998873 3  35799999


Q ss_pred             eecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccccceecccC-CcccccCcCcccccc
Q psy12695         73 LSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITH-EAFINVPKLNLEDFA  143 (369)
Q Consensus        73 l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-~~f~~l~~l~~~~~~  143 (369)
                      |++|+|.   +.+|.++++|++|+|++|+|+.+++.+|..+++|+.|+|++|.++.++. ..|..+++|...++.
T Consensus        83 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~  157 (353)
T 2z80_A           83 LTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG  157 (353)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEE
T ss_pred             CCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECC
Confidence            9999965   6789999999999999999999999889999999999999999999988 788888887776554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.32  E-value=2.2e-12  Score=126.10  Aligned_cols=101  Identities=28%  Similarity=0.414  Sum_probs=87.0

Q ss_pred             CeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccccccc
Q psy12695         39 CECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRE  115 (369)
Q Consensus        39 C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~  115 (369)
                      |.|...  ...++|++++++.+|..+|..++.|+|++|+|.   +.+|.++++|+.|+|++|+|+.+++.+|.++++|+.
T Consensus         7 c~~~~~--~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~   84 (606)
T 3vq2_A            7 CIEVVP--NITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN   84 (606)
T ss_dssp             CEEEET--TTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             ceecCC--CCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCE
Confidence            666433  458999999999999999999999999999954   568999999999999999999998889999999999


Q ss_pred             ccccccceecccCCcccccCcCcccc
Q psy12695        116 LKLSGNPIQKITHEAFINVPKLNLED  141 (369)
Q Consensus       116 L~L~~N~l~~~~~~~f~~l~~l~~~~  141 (369)
                      |+|++|.|+.+.++.|.++++|...+
T Consensus        85 L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           85 LILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             EECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             eECCCCcccccChhhcCCcccCCEEE
Confidence            99999999998888888877765543

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.31  E-value=1.9e-11  Score=89.71  Aligned_cols=90  Identities=19%  Similarity=0.227  Sum_probs=70.1

Q ss_pred             CCCccCCCCC-eeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        145 SPNIRPITPD-VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       145 ~p~i~~~~~~-~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      .|.+...+.+ ..+.+|+.+.|.|.+. .|.|.+.|++++..+...         .++.+........|.|.+++.+|+|
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~---------~~~~~~~~~~~~~L~I~~~~~~D~G   76 (100)
T 2yuv_A            7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPS---------TKYIFEHKGCQRILFINNCQMTDDS   76 (100)
T ss_dssp             SCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCB---------TTEEEEEETTEEEEEEEEECTTTCC
T ss_pred             CCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCC---------CCEEEEecCCEEEEEEcCCCcCcCE
Confidence            4666655665 6789999999999998 789999999998766431         1333334444568999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEeecC
Q psy12695        224 IYTCRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      .|.|.|    |.....+.|.|..++
T Consensus        77 ~Y~C~a----g~~~~~~~l~V~~~P   97 (100)
T 2yuv_A           77 EYYVTA----GDEKCSTELFVRSGP   97 (100)
T ss_dssp             EEEEEE----TTEEEEEEEEECCSC
T ss_pred             EEEEEE----CCceEEEEEEEecCC
Confidence            999999    667778888887765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=99.31  E-value=2.3e-12  Score=99.30  Aligned_cols=62  Identities=29%  Similarity=0.463  Sum_probs=44.1

Q ss_pred             CCCCCCeecccCCceEEEecCCCCC--ccCCCCCCCccEEEeeccee---ChhhccCCcccCeeeccCCcc
Q psy12695         34 ECPSTCECKWKGGKETVLCKAKNFT--TIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLVELDLSYNQI   99 (369)
Q Consensus        34 ~cp~~C~c~~~~~~~~~~c~~~~l~--~ip~~~~~~~~~L~l~~n~i---~~~~f~~l~~L~~L~Ls~N~l   99 (369)
                      .||..|.|.    ..+|+|++++|+  .||..+|.+++.|+|++|+|   .+++|.++++|+.|+|++|.+
T Consensus         1 ~CP~~C~C~----~~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A            1 PCPAPCSCA----GTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CCCTTCEEE----TTEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CcCCCCEEc----CCEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            599999998    458999999999  99999987766655555553   244555555555555555544

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=9.7e-12  Score=92.10  Aligned_cols=91  Identities=14%  Similarity=0.176  Sum_probs=70.2

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +.+...+.++.+.+|+.++|.|.+.+.|.+ .+.|++++..+...         .++.+........|.|.+++.+|+|.
T Consensus         9 ~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~---------~r~~~~~~~~~~~L~I~~v~~~D~G~   79 (104)
T 2eny_A            9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSS---------SRFQATRQGRKYILVVREAAPSDAGE   79 (104)
T ss_dssp             CCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBC---------SSCEEEEETTEEEEEECSCCTTTCSC
T ss_pred             CEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCC---------CCEEEEEcCCEEEEEECCCCHHHCEE
Confidence            456667788999999999999999988754 79999998766431         13333334455689999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      |+|.+.|    ....+.|.|..++.
T Consensus        80 Y~C~a~~----~~~~a~L~V~~~p~  100 (104)
T 2eny_A           80 VVFSVRG----LTSKASLIVRERSG  100 (104)
T ss_dssp             EEEEETT----EEEEECEEEECCCS
T ss_pred             EEEEECC----eeEEEEEEEeCCCc
Confidence            9998844    55778888887653

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.30  E-value=8.4e-12  Score=91.27  Aligned_cols=81  Identities=25%  Similarity=0.274  Sum_probs=64.8

Q ss_pred             CCCCeeeccCCeEEEEEEee-CCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEE
Q psy12695        151 ITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA  229 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  229 (369)
                      .+..+.+.+|+.++|.|.+. |.|.+.+.|++++.....         ....     ...+.|.|.+++.+|+|.|.|.+
T Consensus        16 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~---------~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a   81 (98)
T 1gl4_B           16 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP---------SRAM-----DFNGILTIRNVQPSDAGTYVCTG   81 (98)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCC---------TTEE-----EETTEEEECSCCGGGCEEEEEEE
T ss_pred             CCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCC---------ceee-----cCCCEEEEeCCChhhCEEEEEEe
Confidence            35667899999999999998 789999999997533211         0011     12458999999999999999999


Q ss_pred             EeCCceEEEEEEEEEe
Q psy12695        230 KNGAGEVFTNISLNVI  245 (369)
Q Consensus       230 ~n~~g~~~~~~~l~v~  245 (369)
                      .|..|.....+.|.|.
T Consensus        82 ~n~~g~~~~~~~l~V~   97 (98)
T 1gl4_B           82 SNMFAMDQGTATLHVQ   97 (98)
T ss_dssp             ECSSCEEEEEEEEEEC
T ss_pred             cCCCCccccEEEEEEe
Confidence            9999999888888774

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.29  E-value=4.3e-12  Score=123.05  Aligned_cols=102  Identities=35%  Similarity=0.431  Sum_probs=89.2

Q ss_pred             CCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccc
Q psy12695         38 TCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELR  114 (369)
Q Consensus        38 ~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~  114 (369)
                      .|.|...  ...++|++.+++.||..+|..++.|+|++|+|.   +.+|.++++|+.|||++|+|+.+++.+|.++++|+
T Consensus         2 ~c~~~~~--~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~   79 (570)
T 2z63_A            2 PCVEVVP--NITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS   79 (570)
T ss_dssp             CSEEEET--TTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             CccccCC--CcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCC
Confidence            5777643  468999999999999999999999999999954   66899999999999999999999999999999999


Q ss_pred             cccccccceecccCCcccccCcCcccc
Q psy12695        115 ELKLSGNPIQKITHEAFINVPKLNLED  141 (369)
Q Consensus       115 ~L~L~~N~l~~~~~~~f~~l~~l~~~~  141 (369)
                      .|+|++|.++.++++.|.++++|...+
T Consensus        80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           80 TLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             EEeCcCCcCCccCHhhhcCcccccccc
Confidence            999999999999888888777755433

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.29  E-value=1.7e-11  Score=91.61  Aligned_cols=96  Identities=17%  Similarity=0.310  Sum_probs=68.5

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCC--CCCeEEEEeCCeEeeecccc---cccCCcceEEEEeecceeeEEEcccCC
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGS--PVPKIKWIFKEKIIANISSG---LANMNKRQYIIKTINSLSNLTIVAVTM  219 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~--p~p~i~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~I~~v~~  219 (369)
                      .|.+...+....+.+|+.++|.|.+.+.  +.+.+.|++++..+......   ........    .....+.|.|.+++.
T Consensus        10 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~I~~v~~   85 (112)
T 3so5_A           10 XPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE----LMEYTTILRLRNVEF   85 (112)
T ss_dssp             SCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSS----CEEEEEEEEECSCCG
T ss_pred             CCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCC----ccccceEEEEecccc
Confidence            4667777888999999999999999855  45789999998765421100   00000000    001146899999999


Q ss_pred             CCCEEEEEEEEeCCce-EEEEEEEEE
Q psy12695        220 SDSGIYTCRAKNGAGE-VFTNISLNV  244 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~g~-~~~~~~l~v  244 (369)
                      +|+|.|.|.|.|..|. .+..+.|.|
T Consensus        86 ~D~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           86 TSEGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ccCCeEEEEEEeCCCcEEEeEEEEEe
Confidence            9999999999999998 446677765

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.28  E-value=2e-11  Score=93.17  Aligned_cols=97  Identities=23%  Similarity=0.253  Sum_probs=68.7

Q ss_pred             CCCeeeccCCeEEEEEEeeC--CCCCeEEEEeCCeEeeecccccccCCcceEEEE-eecceeeEEEcccCCCCCEEEEEE
Q psy12695        152 TPDVTAEENENVTLSCRATG--SPVPKIKWIFKEKIIANISSGLANMNKRQYIIK-TINSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g--~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      +..+.+.+|+.+.|.|.+.|  .|.+.+.|++++..+......  ......+... .....+.|.|.+++.+|+|.|+|.
T Consensus        15 ~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   92 (122)
T 3s35_X           15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLV--NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCA   92 (122)
T ss_dssp             CSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHB--CCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceee--eeccccccCCceeeEEEEEEECCCCcccCEEEEEE
Confidence            34568899999999999998  445689999987643210000  0000011000 012356899999999999999999


Q ss_pred             EEeCCceEEEEEEEEEeecCCc
Q psy12695        229 AKNGAGEVFTNISLNVIKVETA  250 (369)
Q Consensus       229 a~n~~g~~~~~~~l~v~~~~~~  250 (369)
                      |.|..|.....+.|.|...+..
T Consensus        93 a~n~~g~~~~~~~l~V~~~p~i  114 (122)
T 3s35_X           93 ASSGLMTKKNSTFVRVHEKPFV  114 (122)
T ss_dssp             EECSSCEEEEEEEEEEEEEECC
T ss_pred             EccCCCceEEEEEEEEeccCeE
Confidence            9999999999999999887643

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=4.4e-11  Score=88.23  Aligned_cols=92  Identities=20%  Similarity=0.256  Sum_probs=72.1

Q ss_pred             CCCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        144 CSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       144 c~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      ..|.+...+.++.+.+|+.+.|.|. .+.|.+.+.|++++..+...         .++.+........|.|.+++.+|+|
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~---------~~~~~~~~~~~~~L~I~~v~~~D~G   76 (103)
T 2dku_A            7 GANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRAS---------GKHQPSQEGLTLRLTISALEKADSD   76 (103)
T ss_dssp             CCCCCSSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCCSS---------SSEEEEEETTEEEEEEESCCTTTCS
T ss_pred             CCCEeEecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCCC---------CeEEEEeCCCEEEEEECCCCcccCE
Confidence            3567777788999999999999999 48899999999998765421         2344433444558999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        224 IYTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      .|+|.    .|.....+.|.|...+.
T Consensus        77 ~Y~C~----~g~~~~~~~l~V~~~p~   98 (103)
T 2dku_A           77 TYTCD----IGQAQSRAQLLVQGRRS   98 (103)
T ss_dssp             EEEEE----CSSCBCCEEEEEECSCC
T ss_pred             EEEEE----eCCceEEEEEEEeCccC
Confidence            99998    56666778888877654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.27  E-value=3.4e-12  Score=123.20  Aligned_cols=94  Identities=26%  Similarity=0.313  Sum_probs=83.6

Q ss_pred             EEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccccceecc
Q psy12695         50 VLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI  126 (369)
Q Consensus        50 ~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~  126 (369)
                      ++|++++++.||..++..+++|+|++|+|.   +.+|.++++|++|+|++|+|+.+++.+|..+++|+.|+|++|.++.+
T Consensus        10 c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~   89 (549)
T 2z81_A           10 CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL   89 (549)
T ss_dssp             EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred             EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence            467889999999999999999999999965   57899999999999999999999999999999999999999999999


Q ss_pred             cCCcccccCcCcccccc
Q psy12695        127 THEAFINVPKLNLEDFA  143 (369)
Q Consensus       127 ~~~~f~~l~~l~~~~~~  143 (369)
                      ++..|.++++|...++.
T Consensus        90 ~~~~~~~l~~L~~L~Ls  106 (549)
T 2z81_A           90 SSSWFGPLSSLKYLNLM  106 (549)
T ss_dssp             CHHHHTTCTTCCEEECT
T ss_pred             CHHHhccCCCCcEEECC
Confidence            98888888887655443

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.27  E-value=1.8e-11  Score=102.70  Aligned_cols=80  Identities=21%  Similarity=0.300  Sum_probs=65.7

Q ss_pred             CeeeccCCeEEEEEEeeCC-CCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        154 DVTAEENENVTLSCRATGS-PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      +..+.+|+.+.|.|.+.|. |.|.|.|++++..+.....  .         ....+...|.|.+++.+|+|.|+|.|.|.
T Consensus       125 ~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~--~---------~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  193 (207)
T 3rbs_A          125 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK--H---------DFKDGICTLLITEFSKKDAGIYEVILKDD  193 (207)
T ss_dssp             EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCC--C---------CCSSEEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCc--e---------EcCCCEEEEEECCCCcccCEEEEEEEEcC
Confidence            3678899999999999999 9999999999988754211  1         11123457999999999999999999999


Q ss_pred             CceEEEEEEEEE
Q psy12695        233 AGEVFTNISLNV  244 (369)
Q Consensus       233 ~g~~~~~~~l~v  244 (369)
                      .|.....+.|.+
T Consensus       194 ~G~~~~~~~L~~  205 (207)
T 3rbs_A          194 RGKDKSRLKLVD  205 (207)
T ss_dssp             TEEEEEEEEECC
T ss_pred             CCEEEEEEEEec
Confidence            999998888754

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.27  E-value=1.9e-11  Score=90.24  Aligned_cols=92  Identities=21%  Similarity=0.439  Sum_probs=71.2

Q ss_pred             CCCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        144 CSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       144 c~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      .+|.+...+.++.+.+|+.+.|.|.+.+.|.+ +.|++++..+..         ..++.+........|.|.+++.+|+|
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~---------~~~~~~~~~~~~~~L~I~~v~~~D~G   76 (103)
T 2e7b_A            7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRP---------GDKYSLRQEGAMLELVVRNLRPQDSG   76 (103)
T ss_dssp             CCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCC---------SSSEEEEECSSEEEEEECSCCTTTCC
T ss_pred             CCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCC---------CCcEEEEEcCCEEEEEEccCCcccCE
Confidence            35667777888999999999999999999999 999998876532         12334443444567999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        224 IYTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      .|.|.    .|.....+.|.|...+.
T Consensus        77 ~Y~C~----~g~~~~~~~l~V~~~p~   98 (103)
T 2e7b_A           77 RYSCS----FGDQTTSATLTVTALPS   98 (103)
T ss_dssp             CEEEE----CSSCBCCBCEEEECCCC
T ss_pred             EEEEE----ECCcEEEEEEEEEeccc
Confidence            99998    55566667788876653

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.26  E-value=5e-12  Score=93.99  Aligned_cols=89  Identities=20%  Similarity=0.281  Sum_probs=68.2

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .|.+...+.++.+.+|+.+.|.|.+.+.|.+ +.|++++..+...         .++.+........|.|.+++.+|+|.
T Consensus         8 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~---------~~~~~~~~~~~~~L~I~~v~~~D~G~   77 (106)
T 2dlt_A            8 QLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPS---------KRITISHVGRFHKLVIDDVRPEDEGD   77 (106)
T ss_dssp             CCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCC---------SSCEEEEETTEEEEEESSCCTTTCSC
T ss_pred             CCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCC---------CCEEEEEeCCEEEEEECCCCcCCCEE
Confidence            4666677888999999999999999999888 9999998766421         12333333445689999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEe
Q psy12695        225 YTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      |+|.|.|..  ....+.|.|.
T Consensus        78 Y~C~a~n~~--~~~~~~l~V~   96 (106)
T 2dlt_A           78 YTFVPDGYA--LSLSAKLNFL   96 (106)
T ss_dssp             EEEEEETSC--CCCCBCEEEE
T ss_pred             EEEEEccCC--ceEEEEEEEE
Confidence            999999983  3344555554

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.26  E-value=6.9e-11  Score=88.79  Aligned_cols=89  Identities=17%  Similarity=0.278  Sum_probs=69.9

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+.++.+.+|+.+.|.|.+.+.  |.+.|++++..+..         ..++.+........|.|.+++.+|+|.|
T Consensus        20 p~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~---------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (113)
T 2edh_A           20 IKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRD---------GDRHSLRQDGARCELQIRGLVAEDAGEY   88 (113)
T ss_dssp             CCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCC---------SSSEEEEEETTEEEEEECSCCSTTCEEE
T ss_pred             CcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCC---------CCcEEEEECCCEEEEEECCCChhhCEEE
Confidence            455566778899999999999999775  68999999876542         1234444444456899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEeecCC
Q psy12695        226 TCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      .|.|    |.....+.|.|...+.
T Consensus        89 ~C~a----~~~~~~~~l~V~~~p~  108 (113)
T 2edh_A           89 LCMC----GKERTSAMLTVRAMPS  108 (113)
T ss_dssp             EEEE----TTEEEEEEEEECCCCC
T ss_pred             EEEe----CCCCEEEEEEEeCCCC
Confidence            9999    6777888898887664

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.26  E-value=7.1e-11  Score=89.51  Aligned_cols=82  Identities=20%  Similarity=0.180  Sum_probs=63.9

Q ss_pred             CeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEee--cceeeEEEcccCCCCCEEEEEEEEeCCceEEE
Q psy12695        161 ENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI--NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT  238 (369)
Q Consensus       161 ~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~  238 (369)
                      +...|.|.+.|.|.|.+.|++++..+......       .......  ...+.|.|.+++.+|+|.|.|.|.|..|....
T Consensus        21 ~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~-------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~   93 (118)
T 1wwc_A           21 LEHCIEFVVRGNPPPTLHWLHNGQPLRESKII-------HVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQ   93 (118)
T ss_dssp             CEEEEEEEEECSSCCEEEEEETTEECCCSSSE-------EEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEE
T ss_pred             cceEEEEEeeeeCCCeEEEEECCEECCCCCce-------eEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEee
Confidence            66788999999999999999999876532211       1111110  13568999999999999999999999999999


Q ss_pred             EEEEEEeecCC
Q psy12695        239 NISLNVIKVET  249 (369)
Q Consensus       239 ~~~l~v~~~~~  249 (369)
                      .+.|.|...|.
T Consensus        94 ~~~l~v~~~P~  104 (118)
T 1wwc_A           94 TINGHFLKEPF  104 (118)
T ss_dssp             EEEECCSCCCC
T ss_pred             EEEEEEccCCC
Confidence            99998877664

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.26  E-value=6.9e-11  Score=93.13  Aligned_cols=98  Identities=17%  Similarity=0.277  Sum_probs=72.2

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEE-EeecceeeEEEcccCCCCCEEEEE
Q psy12695        149 RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYII-KTINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      ...+..+.+.+|++++|.|.+.+.|.+.+.|++.+........... ....++.. ........|.|.+++.+|+|.|+|
T Consensus        42 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~-~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C  120 (145)
T 1z9m_A           42 QPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRA-LRDNRIQLVTSTPHELSISISNVALADEGEYTC  120 (145)
T ss_dssp             CCBCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEEC-SCCTTEEEEEECSSEEEEEECSCCGGGCEEEEE
T ss_pred             ecCCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCcee-cccCCEEEecCCCCeEEEEECCCChhhCEEEEE
Confidence            3456789999999999999999999899999965433221111111 11123332 223346789999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEeecC
Q psy12695        228 RAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       228 ~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      .+.|. |.....+.|.|..+|
T Consensus       121 ~~~n~-~~~~~~~~L~V~~~P  140 (145)
T 1z9m_A          121 SIFTM-PVRTAKSLVTVLGIP  140 (145)
T ss_dssp             EECSS-SCEEEEEEEEEECCC
T ss_pred             EEEcC-CCceEEEEEEEEeCC
Confidence            99999 889999999998765

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.25  E-value=2.1e-11  Score=88.60  Aligned_cols=83  Identities=19%  Similarity=0.263  Sum_probs=66.8

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      .|....+.+|+.+.|.|.+.|  .|.+.|++++..+...         .++..    ..+.|.|.+++.+|+|.|.|.|.
T Consensus         7 ~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~---------~~~~~----~~~~L~i~~~~~~D~G~Y~C~a~   71 (95)
T 4hwu_A            7 QPEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPN---------NRTVL----IGEYLQIKGATPRDSGLYACTAA   71 (95)
T ss_dssp             -CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCC---------SSEEE----ETTEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCC---------ceEEE----eCCEEEECcCCcccCEEEEEEEc
Confidence            456788999999999999987  4799999998776421         12222    14589999999999999999999


Q ss_pred             eCCceEEEEEEEEEeecC
Q psy12695        231 NGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       231 n~~g~~~~~~~l~v~~~~  248 (369)
                      |..|.....+.|.|..+.
T Consensus        72 n~~g~~~~~~~l~V~~~~   89 (95)
T 4hwu_A           72 RTVDSETWIFMVNVTDAA   89 (95)
T ss_dssp             CSSCEEEEEEEEEECCC-
T ss_pred             cCCCcEEEEEEEEEeCCc
Confidence            999999999999887654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.25  E-value=1.2e-11  Score=104.91  Aligned_cols=98  Identities=24%  Similarity=0.327  Sum_probs=86.4

Q ss_pred             CceEEEecCCCCCccCCCC---CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQL---DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLS  119 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~~---~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  119 (369)
                      ..+.++.++++++.+|...   ...++.|+|++|+|.   +.+|.++++|+.|+|++|+|+.+++..|.++++|+.|+|+
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~  112 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN  112 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence            3578999999999988643   257999999999954   6899999999999999999999999999999999999999


Q ss_pred             ccceecccCCcccccCcCcccccc
Q psy12695        120 GNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       120 ~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      +|.|+.+.++.|..+++|...++.
T Consensus       113 ~N~l~~~~~~~~~~l~~L~~L~L~  136 (220)
T 2v9t_B          113 ANKINCLRVDAFQDLHNLNLLSLY  136 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCCCEeCHHHcCCCCCCCEEECC
Confidence            999999999999988887665543

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=5.4e-12  Score=91.99  Aligned_cols=82  Identities=20%  Similarity=0.355  Sum_probs=64.4

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...                  ....|.|.+++.+|+|.|
T Consensus        11 ~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~------------------~~~~L~i~~v~~~d~G~Y   72 (96)
T 2ens_A           11 VQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP------------------PSPVLILPEIGPQDQGTY   72 (96)
T ss_dssp             CCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSC------------------CCSEEEEESCCTTTCEEE
T ss_pred             CEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCC------------------CCCEEEECCCCcccCEEE
Confidence            44555667888999999999999999999999999988655321                  245799999999999999


Q ss_pred             EEEEEeCCce--EEEEEEEEEe
Q psy12695        226 TCRAKNGAGE--VFTNISLNVI  245 (369)
Q Consensus       226 ~C~a~n~~g~--~~~~~~l~v~  245 (369)
                      .|.+.|..|.  .+..+.|.|.
T Consensus        73 ~C~a~n~~~~~~~s~~~~v~V~   94 (96)
T 2ens_A           73 SCVATHSSHGPQESRAVSISII   94 (96)
T ss_dssp             ECEECCSSCCCEECCCEEEEEC
T ss_pred             EEEEEeCCCCcEEEEEEEEEEe
Confidence            9999997554  3344555553

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.25  E-value=2.4e-12  Score=98.42  Aligned_cols=97  Identities=29%  Similarity=0.448  Sum_probs=75.2

Q ss_pred             CCCCccCCCCCeeeccCCeEEEEEEeeCCCCCe-EEEEeCCeEeeecccccccCCcceEEEE--eecc--eeeEEEcccC
Q psy12695        144 CSPNIRPITPDVTAEENENVTLSCRATGSPVPK-IKWIFKEKIIANISSGLANMNKRQYIIK--TINS--LSNLTIVAVT  218 (369)
Q Consensus       144 c~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~L~I~~v~  218 (369)
                      .+|.+.. +..+.+.+|+.+.|.|.+.|.|.|. +.|++++..+.....       .++.+.  ....  .+.|.|.+++
T Consensus        13 ~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~L~I~~v~   84 (122)
T 2cry_A           13 GPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTS-------GRYTVETISTEEGVISTLTISNIV   84 (122)
T ss_dssp             SSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEE-------TTEEEEEEEETTEEEEEEECTTCC
T ss_pred             cCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCC-------CCEEEEEecCCCceEEEEEEcCCC
Confidence            3455555 6778899999999999999999997 999999877653211       122221  1122  4589999999


Q ss_pred             CCCC-EEEEEEEEeCCceEEEEEEEEEeecC
Q psy12695        219 MSDS-GIYTCRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       219 ~~D~-G~Y~C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      .+|+ |.|.|.|.|..|.....+.|.|....
T Consensus        85 ~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~~~  115 (122)
T 2cry_A           85 RADFQTIYNCTAWNSFGSDTEIIRLKEQGSE  115 (122)
T ss_dssp             HHHHHSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred             hhhCCceEEEEEECCCCeEEEEEEEEECCCC
Confidence            9999 99999999999999988888887654

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.25  E-value=6.5e-11  Score=88.13  Aligned_cols=92  Identities=18%  Similarity=0.315  Sum_probs=70.1

Q ss_pred             CCCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        144 CSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       144 c~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      .+|.+...+..+.+.+|+.++|.|.+.+.  |.+.|++++..+..         ..++.+........|.|.+++.+|+|
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~---------~~~~~~~~~~~~~~L~I~~v~~~D~G   75 (108)
T 2dm7_A            7 GPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRD---------GGRYSLKQDGTRCELQIHDLSVADAG   75 (108)
T ss_dssp             CCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCS---------SSSCEEEEETTEEEEEESSCCTTTCS
T ss_pred             CCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCC---------CCCEEEEecCCEEEEEECCCCcccCE
Confidence            45777777788999999999999999876  68999999876542         12333333444567999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEeecCCc
Q psy12695        224 IYTCRAKNGAGEVFTNISLNVIKVETA  250 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v~~~~~~  250 (369)
                      .|+|.+.|    ....+.|.|...+..
T Consensus        76 ~Y~C~a~n----~~~~~~l~V~~~p~~   98 (108)
T 2dm7_A           76 EYSCMCGQ----ERTSATLTVRALPAR   98 (108)
T ss_dssp             EEEEEETT----EEEEEECEEECCCSS
T ss_pred             EEEEEEcC----CEEEEEEEEecCCHH
Confidence            99999944    567778888776543

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.24  E-value=5.6e-11  Score=87.91  Aligned_cols=88  Identities=18%  Similarity=0.295  Sum_probs=64.4

Q ss_pred             CCCccCCCCC-eeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        145 SPNIRPITPD-VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       145 ~p~i~~~~~~-~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      .|.+...+.. +.+.+|+.+.|.|.+ +.|.+.+.|++++..+...        ..++.+........|.|.+++.+|+|
T Consensus        15 ~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~--------~~~~~~~~~~~~~~L~I~~v~~~D~G   85 (104)
T 1pd6_A           15 STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMS--------GSKYIFESIGAKRTLTISQCSLADDA   85 (104)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCC--------SSSSEEEEETTEEEEEECSCSSSSCE
T ss_pred             CCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCC--------CCeEEEEecCCEEEEEECCCCcccCE
Confidence            4556555555 889999999999999 7899999999999876532        01333333344558999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEe
Q psy12695        224 IYTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      .|.|.+.    .....+.|.|.
T Consensus        86 ~Y~C~a~----~~~~~~~l~V~  103 (104)
T 1pd6_A           86 AYQCVVG----GEKCSTELFVK  103 (104)
T ss_dssp             EEEEEET----TEEECCEEEEE
T ss_pred             EEEEEEC----CCcEEEEEEEe
Confidence            9999993    34444555553

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.24  E-value=1.6e-11  Score=101.73  Aligned_cols=95  Identities=20%  Similarity=0.259  Sum_probs=84.5

Q ss_pred             CceEEEecCCCCCccCCC--C--CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQ--L--DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKL  118 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~--~--~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  118 (369)
                      ..+.++.+++.++.+|..  +  ...++.|+|++|+|.   +.+|.++++|++|+|++|+|+.+++.+|.++++|+.|+|
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            357899999999988863  3  357999999999965   678999999999999999999999999999999999999


Q ss_pred             cccceecccCCcccccCcCccc
Q psy12695        119 SGNPIQKITHEAFINVPKLNLE  140 (369)
Q Consensus       119 ~~N~l~~~~~~~f~~l~~l~~~  140 (369)
                      ++|.|+.+.+..|..+++|...
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L  131 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSL  131 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEE
T ss_pred             CCCcCCeeCHHHhhcCCCCCEE
Confidence            9999999999999888876543

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=3.3e-12  Score=94.05  Aligned_cols=92  Identities=17%  Similarity=0.161  Sum_probs=67.0

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+.++.+.+|+.+.|.|.+.+.| +.+.|++++..+......     ..++.+........|.|.+++.+|+|.|
T Consensus         9 ~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~-----~~~~~~~~~~~~~~L~I~~~~~~D~G~Y   82 (101)
T 2edk_A            9 VLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSF-----KARYRFKKDGKRHILIFSDVVQEDRGRY   82 (101)
T ss_dssp             CCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCS-----SCCCEEEECSSEEEEECSSCCGGGCSBE
T ss_pred             CEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCc-----ceeEEEEECCCEEEEEECCCChhhCEEE
Confidence            4555667788999999999999999998 999999998766432210     0033333344456899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEeec
Q psy12695        226 TCRAKNGAGEVFTNISLNVIKV  247 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v~~~  247 (369)
                      +|.|.|.    ...+.|.|...
T Consensus        83 ~C~a~n~----~~~~~l~V~~~  100 (101)
T 2edk_A           83 QVITNGG----QCEAELIVEEK  100 (101)
T ss_dssp             EEECSSC----EECCBEEEECC
T ss_pred             EEEEcCC----cEEEEEEEeCC
Confidence            9999872    33455665543

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.24  E-value=4.6e-11  Score=98.88  Aligned_cols=85  Identities=28%  Similarity=0.396  Sum_probs=69.8

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcc-cCCCCCEEEEEEEE
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVA-VTMSDSGIYTCRAK  230 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~-v~~~D~G~Y~C~a~  230 (369)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..+...         .++.+......+.|.|.+ +..+|+|.|+|.|.
T Consensus       111 ~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~---------~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~  181 (197)
T 2j8h_A          111 MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN---------GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK  181 (197)
T ss_dssp             BEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSS---------SSCEEEECSSEEEEECTTCCCGGGCEEEEEEEE
T ss_pred             cCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecC---------CCEEEEEcCCceEEEEeCCCCcccCEeEEEEEE
Confidence            35567889999999999999999999999998776521         122333334567899999 99999999999999


Q ss_pred             eCCceEEEEEEEEEe
Q psy12695        231 NGAGEVFTNISLNVI  245 (369)
Q Consensus       231 n~~g~~~~~~~l~v~  245 (369)
                      |..|.....+.|.|.
T Consensus       182 N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          182 NRFGIDQKTVELDVA  196 (197)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCcEeEEEEEEEe
Confidence            999999998888875

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=2.2e-11  Score=91.96  Aligned_cols=95  Identities=19%  Similarity=0.304  Sum_probs=72.1

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEE-eecceeeEEEcccCCCCCEEE
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK-TINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      .+...+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+.......         +. .......|.|.+++.+|+|.|
T Consensus        15 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~---------~~~~~~~~~~L~I~~v~~~D~G~Y   85 (115)
T 2cr6_A           15 HIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNE---------IDAQPGGYHVLTLRQLALKDSGTI   85 (115)
T ss_dssp             EEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCC---------BCCBTTTBCCBEECSCCTTTCEEE
T ss_pred             eEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEE---------EEEcCCCEEEEEEcCCChhhCEEE
Confidence            34455678899999999999999999999999999998765322111         11 112345799999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEeecCCcccCC
Q psy12695        226 TCRAKNGAGEVFTNISLNVIKVETAVAQP  254 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v~~~~~~~~~~  254 (369)
                      +|.    .|.....+.|.|...+.....+
T Consensus        86 ~C~----~g~~~~~~~L~V~~~p~~~~~~  110 (115)
T 2cr6_A           86 YFE----AGDQRASAALRVTEKPSVFSRS  110 (115)
T ss_dssp             EEE----ETTEECCEEEEEECCSSCCSSS
T ss_pred             EEE----ECCeeEEEEEEEECCCceeccC
Confidence            999    4667777889998877654443

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.23  E-value=1.2e-10  Score=102.28  Aligned_cols=92  Identities=25%  Similarity=0.437  Sum_probs=75.7

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...         .++.+........|.|.+++.+|+|.
T Consensus       192 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~---------~~~~~~~~~~~~~L~i~~v~~~d~G~  262 (284)
T 2rik_A          192 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG---------KKYKIMSENFLTSIHILNVDSADIGE  262 (284)
T ss_dssp             CCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBT---------TTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCC---------CCEEEEEcCCEEEEEEcCCCcccCEE
Confidence            355666677788999999999999999999999999999877532         12333334445789999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEe
Q psy12695        225 YTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      |+|.|.|..|.....+.|.|.
T Consensus       263 Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          263 YQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             EEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEeCCCceeEEEEEEEc
Confidence            999999999999999988875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.23  E-value=8.2e-12  Score=123.77  Aligned_cols=97  Identities=24%  Similarity=0.447  Sum_probs=71.9

Q ss_pred             CeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccccccc
Q psy12695         39 CECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRE  115 (369)
Q Consensus        39 C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~  115 (369)
                      |.|.    ...++|++++|+.||..+|..++.|+|++|+|.   +.+|.++++|+.|+|++|+|+.+++.+|.++++|+.
T Consensus         2 C~~~----~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~   77 (680)
T 1ziw_A            2 CTVS----HEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKV   77 (680)
T ss_dssp             --CB----SSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCE
T ss_pred             ceeE----CCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCE
Confidence            7777    357999999999999999999999999999854   456777777777777777777776666766777777


Q ss_pred             ccccccceecccCCcccccCcCcc
Q psy12695        116 LKLSGNPIQKITHEAFINVPKLNL  139 (369)
Q Consensus       116 L~L~~N~l~~~~~~~f~~l~~l~~  139 (369)
                      |+|++|.|+.++++.|.++++|..
T Consensus        78 L~L~~n~l~~l~~~~~~~l~~L~~  101 (680)
T 1ziw_A           78 LNLQHNELSQLSDKTFAFCTNLTE  101 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSE
T ss_pred             EECCCCccCccChhhhccCCCCCE
Confidence            777777777666666666555443

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=9.9e-11  Score=87.87  Aligned_cols=83  Identities=20%  Similarity=0.438  Sum_probs=63.6

Q ss_pred             eeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695        155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG  234 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g  234 (369)
                      +.+.+|+.+.|.|.+. .|.+.+.|++++..+....         ++.+........|.|.+++.+|+|.|.|.+.|   
T Consensus        23 ~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~---------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n---   89 (113)
T 2cpc_A           23 VAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESP---------ALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD---   89 (113)
T ss_dssp             EEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBT---------TBEEEECSSEEEEEESSCCTTTCEEEEEESSS---
T ss_pred             EEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCC---------CEEEEECCCEEEEEECCCCcccCEEEEEEEec---
Confidence            6788999999999995 7889999999997764321         22222223346899999999999999999998   


Q ss_pred             eEEEEEEEEEeecCCcc
Q psy12695        235 EVFTNISLNVIKVETAV  251 (369)
Q Consensus       235 ~~~~~~~l~v~~~~~~~  251 (369)
                       ....+.|.|...+...
T Consensus        90 -~~~~~~l~V~~~p~~~  105 (113)
T 2cpc_A           90 -ESASFTVTVTEPPVRI  105 (113)
T ss_dssp             -CEEEEEEEEECCCCCC
T ss_pred             -CcEEEEEEEecCCchh
Confidence             4567788887766443

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.22  E-value=1.5e-11  Score=93.12  Aligned_cols=96  Identities=26%  Similarity=0.464  Sum_probs=66.8

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEE-----cccCC
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTI-----VAVTM  219 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I-----~~v~~  219 (369)
                      +|.+...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+.......    ......   ...+.+.+     .+++.
T Consensus         9 pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~i~~~~v~~   81 (117)
T 2v9t_A            9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDP----RSHRML---LPSGSLFFLRIVHGRKSR   81 (117)
T ss_dssp             EEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCS----SCSEEE---CTTSCEEESSCCCBTTBC
T ss_pred             CCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCC----cceeEE---ecCCcEEEEEEEeCCCCc
Confidence            4666667788899999999999999999999999999988765322110    001111   11223333     35689


Q ss_pred             CCCEEEEEEEEeCCceEEEE-EEEEEeec
Q psy12695        220 SDSGIYTCRAKNGAGEVFTN-ISLNVIKV  247 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~g~~~~~-~~l~v~~~  247 (369)
                      +|+|.|.|.|.|..|..... +.+.+...
T Consensus        82 ~D~G~Y~C~a~N~~G~~~s~~~~l~~~~~  110 (117)
T 2v9t_A           82 PDEGVYVCVARNYLGEAVSHDASLEVAAA  110 (117)
T ss_dssp             SSCEEEEEEEEETTEEEECCCEEEEEC--
T ss_pred             CcCEEEEEEEEeCccceEeeeEEEEhhhh
Confidence            99999999999999986544 66666543

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.20  E-value=5e-11  Score=92.93  Aligned_cols=97  Identities=26%  Similarity=0.379  Sum_probs=66.8

Q ss_pred             ccccCCCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeeccccccc-CCcceEEEE---eecceeeEEEc
Q psy12695        140 EDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLAN-MNKRQYIIK---TINSLSNLTIV  215 (369)
Q Consensus       140 ~~~~c~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~L~I~  215 (369)
                      ....++|.+...+..+.+.+|+.++|.|.+.|.|.|.+.|++++..+......... ....++...   .....+.|.|.
T Consensus        16 ~~~~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~   95 (137)
T 3qr2_A           16 PRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISID   95 (137)
T ss_dssp             -----CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEEC
T ss_pred             CCCCCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEEC
Confidence            34556788888899999999999999999999999999999976543211000000 001111111   11235689999


Q ss_pred             ccCCCCCEEEEEEEEeCCceE
Q psy12695        216 AVTMSDSGIYTCRAKNGAGEV  236 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n~~g~~  236 (369)
                      +++.+|+|.|.|.|.|..|..
T Consensus        96 ~v~~~D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           96 TLVEEDTGTYECRASNDPDRN  116 (137)
T ss_dssp             SCCGGGCEEEEEEEECCTTSS
T ss_pred             CCCcccCEEEEEEEEecCCcc
Confidence            999999999999999999875

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.20  E-value=1.6e-10  Score=96.65  Aligned_cols=88  Identities=27%  Similarity=0.451  Sum_probs=71.9

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEee-cceeeEEEcccCCCCCEEEEEEE
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI-NSLSNLTIVAVTMSDSGIYTCRA  229 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a  229 (369)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....         ++.+... .....|.|.+++.+|+|.|.|.|
T Consensus       123 ~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~---------~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  193 (212)
T 2r15_A          123 LPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTD---------HCNLKFEAGRTAYFTINGVSTADSGKYGLVV  193 (212)
T ss_dssp             CCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCS---------SEEEEEETTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCC---------CEEEEEcCCCEEEEEEcCcchHHCeEEEEEE
Confidence            3456788999999999999999999999999998775321         2222222 34568999999999999999999


Q ss_pred             EeCCceEEEEEEEEEeec
Q psy12695        230 KNGAGEVFTNISLNVIKV  247 (369)
Q Consensus       230 ~n~~g~~~~~~~l~v~~~  247 (369)
                      .|..|.....+.|.|..+
T Consensus       194 ~N~~g~~~~~~~l~V~~P  211 (212)
T 2r15_A          194 KNKYGSETSDFTVSVFIP  211 (212)
T ss_dssp             EETTEEEEEEEEEEEECC
T ss_pred             EcCCCcEEEEEEEEEEcc
Confidence            999999999999988753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.20  E-value=4e-11  Score=101.59  Aligned_cols=97  Identities=18%  Similarity=0.291  Sum_probs=80.4

Q ss_pred             ceEEEecCCCCCccC-CCC---CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIP-EQL---DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLS  119 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip-~~~---~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  119 (369)
                      .+.++.++|+++.++ ...   ...++.|+|++|+|.   +.+|.++++|+.|+|++|+|+.+++.+|.++++|+.|+|+
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence            457999999999874 332   357899999999854   6689999999999999999999999889999999999999


Q ss_pred             ccceecccCCcccccCcCcccccc
Q psy12695        120 GNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       120 ~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      +|.|+.+.+..|..+++|...++.
T Consensus       114 ~N~l~~~~~~~~~~l~~L~~L~L~  137 (220)
T 2v70_A          114 SNRITCVGNDSFIGLSSVRLLSLY  137 (220)
T ss_dssp             TSCCCCBCTTSSTTCTTCSEEECT
T ss_pred             CCcCCeECHhHcCCCccCCEEECC
Confidence            999999988888888887665443

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.20  E-value=1.4e-10  Score=95.91  Aligned_cols=97  Identities=30%  Similarity=0.437  Sum_probs=77.4

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEE-eecceeeEEEcccCCCCCE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK-TINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G  223 (369)
                      +|.+...+..+.+.+|+.+.|.|.+.|.|.+.+.|++++..+...        ..++.+. ...+...|.|.+++.+|+|
T Consensus         4 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~--------~~~~~~~~~~~~~~~L~i~~~~~~d~G   75 (197)
T 2j8h_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD--------GLKYRIQEFKGGYHQLIIASVTDDDAT   75 (197)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCC--------SSSEEEEEETTTEEEEEECSCCGGGCS
T ss_pred             CCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccC--------CCcEEEEEcCCCEEEEEECcCCHHhCE
Confidence            456666778899999999999999999999999999998776531        1122222 2233458999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        224 IYTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      .|.|.+.|..|.....+.|.|...+.
T Consensus        76 ~Y~C~~~n~~g~~~~~~~l~V~~~p~  101 (197)
T 2j8h_A           76 VYQVRATNQGGSVSGTASLEVEVPAK  101 (197)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred             EEEEEEEECCCceeEEEEEEEcCCCc
Confidence            99999999999988888888876543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.20  E-value=2.6e-11  Score=123.07  Aligned_cols=94  Identities=23%  Similarity=0.293  Sum_probs=67.0

Q ss_pred             CeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCC-cccccCCcccccccccc
Q psy12695         39 CECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYN-QIQFVPSHILDSILELR  114 (369)
Q Consensus        39 C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~  114 (369)
                      |.|.    ...++|++++|+.||. +|..++.|+|++|+|.   +.+|.++++|+.|||++| .+..|++.+|.++++|+
T Consensus         2 C~~~----~~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~   76 (844)
T 3j0a_A            2 CSFD----GRIAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR   76 (844)
T ss_dssp             CBTT----TEEEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCC
T ss_pred             ceEe----ceEEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCC
Confidence            7776    4689999999999999 9999999999999944   455666666666666666 34455556666666666


Q ss_pred             cccccccceecccCCcccccCcC
Q psy12695        115 ELKLSGNPIQKITHEAFINVPKL  137 (369)
Q Consensus       115 ~L~L~~N~l~~~~~~~f~~l~~l  137 (369)
                      .|+|++|.|+.+.++.|.++++|
T Consensus        77 ~L~Ls~N~l~~~~p~~~~~l~~L   99 (844)
T 3j0a_A           77 ILDLGSSKIYFLHPDAFQGLFHL   99 (844)
T ss_dssp             EEECTTCCCCEECTTSSCSCSSC
T ss_pred             EEECCCCcCcccCHhHccCCccc
Confidence            66666666666655555555554

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.20  E-value=2e-10  Score=100.75  Aligned_cols=98  Identities=28%  Similarity=0.383  Sum_probs=80.4

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +|.+...+..+.+.+|+.++|.|.+.|.|.+.+.|++++..+...         .++.+........|.|.+++.+|+|.
T Consensus         5 pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~---------~~~~~~~~~~~~~L~i~~v~~~d~G~   75 (284)
T 2rik_A            5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG---------GNYKMTLVENTATLTVLKVTKGDAGQ   75 (284)
T ss_dssp             CCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSS---------SSEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCC---------CcEEEEEcCCEEEEEEecCCcccCEE
Confidence            455666678889999999999999999999999999999876421         12333344556899999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeecCCcc
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKVETAV  251 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~~~~~  251 (369)
                      |.|.+.|..|.....+.|.|...+...
T Consensus        76 Y~C~~~n~~g~~~~~~~l~V~~~p~~~  102 (284)
T 2rik_A           76 YTCYASNVAGKDSCSAQLGVQEPPRFI  102 (284)
T ss_dssp             EEEEEEETTEEEEEEEEEEEECCCEEE
T ss_pred             EEEEEEECCceEEEEEEEEccCCCccc
Confidence            999999999999889999998776543

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=2.4e-10  Score=85.28  Aligned_cols=99  Identities=16%  Similarity=0.184  Sum_probs=70.4

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeeccc-ccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISS-GLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |.+...+.++.+.+|+.+.|.|.+.+  .|.+.|+++|..+..... ........++.+........|.|.+++.+|+|.
T Consensus         9 ~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~   86 (112)
T 2e6q_A            9 ARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGA   86 (112)
T ss_dssp             CCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSE
T ss_pred             cEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCcc
Confidence            45666778999999999999999998  778999999988764320 000001114444333345689999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      |+|...+   .....+.|.|...|.
T Consensus        87 Y~~~~~~---~~~ssA~L~V~~~p~  108 (112)
T 2e6q_A           87 LVGFSCP---GVQDSAALTIQESSG  108 (112)
T ss_dssp             EEEEEET---TEEEEEEEEEECSSC
T ss_pred             EEEEEEC---CeeEEEEEEEeCCCc
Confidence            9875543   345678898887664

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.19  E-value=1.1e-10  Score=98.14  Aligned_cols=96  Identities=21%  Similarity=0.311  Sum_probs=77.1

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+ ..+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+....       ..++.+......+.|.|.++..+|+|.|
T Consensus        20 P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~-------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y   91 (215)
T 3mtr_A           20 PKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSN-------YSNIKIYNTPSASYLEVTPDSENDFGNY   91 (215)
T ss_dssp             EEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSS-------SCSEEEEEETTEEEEEECCCSGGGCEEE
T ss_pred             Ccc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCC-------CccEEEecCCCeeEEEEecCChhhCeEE
Confidence            444 35667889999999999999999999999999998764321       1233333344568999999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEeecCC
Q psy12695        226 TCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      .|.|.|..|.....+.+.|...+.
T Consensus        92 ~C~a~n~~g~~~~~~~l~v~~~P~  115 (215)
T 3mtr_A           92 NCTAVNRIGQESLEFILVQADTPS  115 (215)
T ss_dssp             EEEEECSSCEEEEEEEEEECCCCC
T ss_pred             EEEEEECCCceEEEEEEEECCCCC
Confidence            999999999999999998876553

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.19  E-value=2.8e-10  Score=93.68  Aligned_cols=95  Identities=22%  Similarity=0.418  Sum_probs=73.9

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEe--CCeEeeecccccccCCcceEEEEeecceeeEEEcccC-CCC
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIF--KEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT-MSD  221 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D  221 (369)
                      .|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++  ++..+....      ...++.+......+.|.|.+++ .+|
T Consensus        92 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~------~~~~~~~~~~~~~~~L~i~~~~~~~d  165 (190)
T 2wv3_A           92 APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISN------SSGRFFIINKENYTELNIVNLQITED  165 (190)
T ss_dssp             CCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCC------TTSCEEEEECSSEEEEEECSCCTTTS
T ss_pred             CCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeec------CCCeEEEecCCCeeEEEEEeccccCC
Confidence            4555555667789999999999999999999999999  555443211      1223444334445689999999 799


Q ss_pred             CEEEEEEEEeCCceEEEEEEEEEe
Q psy12695        222 SGIYTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       222 ~G~Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      +|.|.|.|.|..|.....+.|.|.
T Consensus       166 ~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          166 PGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CEEEEEEEEecCCcceeEEEEEEE
Confidence            999999999999999998888875

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.18  E-value=3.3e-10  Score=92.67  Aligned_cols=97  Identities=21%  Similarity=0.402  Sum_probs=74.7

Q ss_pred             CCCCccCCCCCeeeccCCeEEEEEEeeCCC-CCeEEEEe---CCeEeeecccccccCCcceEEEEeecceeeEEEcccC-
Q psy12695        144 CSPNIRPITPDVTAEENENVTLSCRATGSP-VPKIKWIF---KEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT-  218 (369)
Q Consensus       144 c~p~i~~~~~~~~~~~G~~~~l~C~~~g~p-~p~i~W~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-  218 (369)
                      ..|.+...+....+.+|+.+.|.|.+.|.| .|.+.|++   ++.......      ...++.+........|.|.+++ 
T Consensus        82 ~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~L~i~~v~~  155 (184)
T 3b5h_A           82 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNG------SESRFFVSSSQGRSELHIENLNM  155 (184)
T ss_dssp             CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTT------GGGTEEEEEETTEEEEEECSCCT
T ss_pred             cCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecC------CCCEEEEEecCCeeEEEEeeccc
Confidence            356666666677889999999999999999 79999999   444332111      1134444444556789999999 


Q ss_pred             CCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy12695        219 MSDSGIYTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       219 ~~D~G~Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      .+|+|.|.|.|.|..|.....+.|.|..
T Consensus       156 ~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  183 (184)
T 3b5h_A          156 EADPGQYRCNGTSSKGSDQAIITLRVRS  183 (184)
T ss_dssp             TTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             cccCceEEEEEEeCCCcceEEEEEEEec
Confidence            8999999999999999999888888853

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.18  E-value=1.3e-10  Score=95.87  Aligned_cols=97  Identities=34%  Similarity=0.526  Sum_probs=78.2

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .|.+...+.++.+.+|+.+.|.|.+.|.|.+.+.|++++..+...         .++.+........|.|.+++.+|+|.
T Consensus         7 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~---------~~~~~~~~~~~~~L~i~~~~~~d~G~   77 (197)
T 3lcy_A            7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQS---------RKYKMSSDGRTHTLTVMTEEQEDEGV   77 (197)
T ss_dssp             EEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCC---------SSEEEEESSSEEEEEEECCSGGGCEE
T ss_pred             CCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCC---------ccEEEEeCCCEEEEEEecCCccCCEE
Confidence            355666678899999999999999999999999999999876431         22333333445589999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeecCCc
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKVETA  250 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~~~~  250 (369)
                      |+|.+.|..|.....+.+.|...+..
T Consensus        78 Y~C~~~n~~~~~~~~~~l~v~~~p~~  103 (197)
T 3lcy_A           78 YTCIATNEVGEVETSSKLLLQATPQF  103 (197)
T ss_dssp             EEEEEECSSCEEEEEEEEEEEEEEEE
T ss_pred             EEEEEECCCCceeEEEEEEEEcCCCC
Confidence            99999999999888888888766543

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.17  E-value=1.1e-10  Score=96.22  Aligned_cols=95  Identities=27%  Similarity=0.427  Sum_probs=76.0

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.....       .++..........|.|.+++.+|+|.
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~-------~~~~~~~~~~~~~L~i~~~~~~d~G~   77 (194)
T 2a38_A            5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTL-------PGVQISFSDGRAKLTIPAVTKANSGR   77 (194)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTS-------TTCEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccC-------CceEEEeCCCEEEEEECCCCcccCEE
Confidence            35566667888999999999999999999999999998876543221       12223334556789999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEee
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      |.|.+.|..|.....+.+.|..
T Consensus        78 Y~C~~~n~~~~~~~~~~l~v~~   99 (194)
T 2a38_A           78 YSLKATNGSGQATSTAELLVKA   99 (194)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEcCCceEeEEEEEEEcc
Confidence            9999999999988888888874

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.17  E-value=1.3e-10  Score=95.76  Aligned_cols=90  Identities=28%  Similarity=0.382  Sum_probs=72.5

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...         .++..........|.|.+++.+|+|.|
T Consensus       104 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~---------~~~~~~~~~~~~~L~i~~~~~~d~G~Y  174 (194)
T 2a38_A          104 PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSS---------LDFQISQEGDLYSLLIAEAYPEDSGTY  174 (194)
T ss_dssp             EEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCS---------SSEEEEEETTEEEEEEEEECGGGCEEE
T ss_pred             CEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCC---------CcEEEEEcCCEEEEEECCCChhcCeEE
Confidence            44444566788999999999999999999999999999876431         123333334455899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEE
Q psy12695        226 TCRAKNGAGEVFTNISLNV  244 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v  244 (369)
                      +|.|.|..|.....+.|.|
T Consensus       175 ~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          175 SVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEeCCCceEEEEEEEE
Confidence            9999999999988888876

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.17  E-value=3.4e-10  Score=94.96  Aligned_cols=96  Identities=25%  Similarity=0.450  Sum_probs=76.8

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEe-ecceeeEEEcccCC-CCC
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT-INSLSNLTIVAVTM-SDS  222 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~-~D~  222 (369)
                      +|.+...+.++.+.+|+.+.|.|.+.|.|.+.+.|++++..+...        ..++.+.. ..+...|.|.+++. +|+
T Consensus         6 pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~--------~~~~~~~~~~~~~~~L~i~~v~~~~d~   77 (212)
T 2yd1_A            6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGT--------QSRYTVLEQPGGISILRIEPVRAGRDD   77 (212)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTT--------STTEEEEEETTTEEEEEESSCCTTTTC
T ss_pred             CCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCC--------cceeEEEEcCCCeEEEEEEecCCCCcC
Confidence            466677788899999999999999999999999999998776411        12222222 23347899999999 999


Q ss_pred             EEEEEEEEeCCce-EEEEEEEEEeecC
Q psy12695        223 GIYTCRAKNGAGE-VFTNISLNVIKVE  248 (369)
Q Consensus       223 G~Y~C~a~n~~g~-~~~~~~l~v~~~~  248 (369)
                      |.|.|.+.|..|. ....+.|.|...+
T Consensus        78 G~Y~C~~~n~~g~~~~~~~~l~V~~~~  104 (212)
T 2yd1_A           78 APYECVAENGVGDAVSADATLTIYEGD  104 (212)
T ss_dssp             SEEEEEEECSSSCEEEEEEEEEEECTT
T ss_pred             ceEEEEEEeCCCCeEEeeEEEEEeccc
Confidence            9999999999998 7888889887653

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.16  E-value=2.6e-10  Score=95.69  Aligned_cols=95  Identities=33%  Similarity=0.448  Sum_probs=75.2

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEccc-CCCCCE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV-TMSDSG  223 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G  223 (369)
                      +|.+...+.++.+.+|+.+.|.|.+.|.|.+.+.|++++..+...        ..............|.|.++ ..+|+|
T Consensus         6 ~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~--------~~~~~~~~~~~~~~L~i~~v~~~~d~G   77 (212)
T 2yd6_A            6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQ--------RFEVIEFDDGSGSVLRIQPLRTPRDEA   77 (212)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCT--------TEEEEEEGGGTEEEEEECSCCTTTTCE
T ss_pred             CCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCC--------ceeEEEEcCCCceEEEEeccCCCCCCe
Confidence            456666778899999999999999999999999999998776421        11111111224567999999 599999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEeec
Q psy12695        224 IYTCRAKNGAGEVFTNISLNVIKV  247 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v~~~  247 (369)
                      .|+|.+.|..|.....+.|.|...
T Consensus        78 ~Y~C~a~n~~g~~~~~~~l~V~~~  101 (212)
T 2yd6_A           78 IYECVASNNVGEISVSTRLTVLRE  101 (212)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECG
T ss_pred             EEEEEEEcCCCcEEEEEEEEEecc
Confidence            999999999999888889988764

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.16  E-value=1.9e-10  Score=111.64  Aligned_cols=100  Identities=24%  Similarity=0.394  Sum_probs=80.4

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +|.+...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+...         .++.+........|.|.++..+|+|.
T Consensus       384 ~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~---------~~~~~~~~~~~~~L~i~~v~~~D~G~  454 (570)
T 3b43_A          384 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSG---------KKYKIMSENFLTSIHILNVDSADIGE  454 (570)
T ss_dssp             CCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSS---------SSEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCC---------CCEEEEEcCCEEEEEECCCChhhCEE
Confidence            355556677888899999999999999999999999999876421         12333333445689999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeecCCcccC
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKVETAVAQ  253 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~  253 (369)
                      |.|.|.|..|.....+.|.|..+|.....
T Consensus       455 Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~  483 (570)
T 3b43_A          455 YQCKASNDVGSDTCVGSITLKAPPRFVKK  483 (570)
T ss_dssp             EEEEEECSSCEEEEEEEEEECCCCEEEEC
T ss_pred             EEEEEEECCCeEEEEEEEEeccCCccccc
Confidence            99999999999999999999877654433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.16  E-value=7.8e-11  Score=96.16  Aligned_cols=96  Identities=23%  Similarity=0.333  Sum_probs=84.3

Q ss_pred             CceEEEecCCCCCccCCCC---CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQL---DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLS  119 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~~---~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  119 (369)
                      ..+.++.++++++.+|...   ...++.|+|++|+|.   +..|.++++|+.|+|++|+|+.+++..|..+++|+.|+|+
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            3578999999999988754   357999999999965   5678999999999999999999999999999999999999


Q ss_pred             ccceecccCCcccccCcCcccc
Q psy12695        120 GNPIQKITHEAFINVPKLNLED  141 (369)
Q Consensus       120 ~N~l~~~~~~~f~~l~~l~~~~  141 (369)
                      +|.|+.++...|..+++|...+
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~  130 (177)
T 2o6r_A          109 TNQLKSVPDGIFDRLTSLQKIW  130 (177)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CCcceEeCHHHhcCCcccCEEE
Confidence            9999999998888887765443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.16  E-value=3.3e-11  Score=118.13  Aligned_cols=97  Identities=16%  Similarity=0.142  Sum_probs=86.0

Q ss_pred             CceEEEecCCCCCccCCC-C--CCCccEEEeeccee---ChhhccCCcccCeeeccCCcccccCCccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQ-L--DVGTQVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLS  119 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~-~--~~~~~~L~l~~n~i---~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  119 (369)
                      ..+.++.++|.|+.+|.. +  -..+++|+|++|+|   .+++|.+|++|++|+|++|+|+.+++++|.++.+|+.|+|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            357899999999999864 3  25799999999994   57899999999999999999999999999999999999999


Q ss_pred             ccceecccCCcccccCcCccccc
Q psy12695        120 GNPIQKITHEAFINVPKLNLEDF  142 (369)
Q Consensus       120 ~N~l~~~~~~~f~~l~~l~~~~~  142 (369)
                      +|.|+.+++..|.++++|...++
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~L~L  155 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKELNV  155 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEEC
T ss_pred             CCcCCCCChhhhhcCcccCeecc
Confidence            99999999999998888665443

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.16  E-value=2.5e-10  Score=85.02  Aligned_cols=84  Identities=20%  Similarity=0.302  Sum_probs=60.0

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCe-----EeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK-----IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      ..|..+.+.+|++++|.|.+.+.|.+.+.|+++..     .+.............++.+........|.|.+++.+|+|.
T Consensus         6 q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~   85 (108)
T 1jhl_L            6 QSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAM   85 (108)
T ss_dssp             EECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSE
T ss_pred             ccCCeeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHHHCEE
Confidence            44667889999999999999999989999998541     1221111100011235555444456789999999999999


Q ss_pred             EEEEEEeCC
Q psy12695        225 YTCRAKNGA  233 (369)
Q Consensus       225 Y~C~a~n~~  233 (369)
                      |.|.+.|..
T Consensus        86 Y~C~~~n~~   94 (108)
T 1jhl_L           86 YICQQHNEY   94 (108)
T ss_dssp             EEEEECSSS
T ss_pred             EEEEEccCC
Confidence            999999874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.15  E-value=6.2e-11  Score=104.83  Aligned_cols=91  Identities=27%  Similarity=0.330  Sum_probs=45.0

Q ss_pred             eEEEecCCCCCccCCC-CCCCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCccccccccccccccccccee
Q psy12695         48 ETVLCKAKNFTTIPEQ-LDVGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ  124 (369)
Q Consensus        48 ~~~~c~~~~l~~ip~~-~~~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~  124 (369)
                      +.++.+++.++.+|.. -...++.|+|++|+|.  +..|.++++|+.|+|++|+|+.+++++|.++++|+.|+|++|.|+
T Consensus        58 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  137 (290)
T 1p9a_G           58 TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK  137 (290)
T ss_dssp             CEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred             CEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence            4455555555544431 1234555555555543  233445555555555555555555555555555555555555555


Q ss_pred             cccCCcccccCcCc
Q psy12695        125 KITHEAFINVPKLN  138 (369)
Q Consensus       125 ~~~~~~f~~l~~l~  138 (369)
                      .++++.|..+++|.
T Consensus       138 ~~~~~~~~~l~~L~  151 (290)
T 1p9a_G          138 TLPPGLLTPTPKLE  151 (290)
T ss_dssp             CCCTTTTTTCTTCC
T ss_pred             ccChhhcccccCCC
Confidence            55555554444443

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.15  E-value=2.9e-10  Score=93.97  Aligned_cols=100  Identities=18%  Similarity=0.279  Sum_probs=75.9

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEee-CCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecc-------eeeEEEccc
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS-------LSNLTIVAV  217 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~L~I~~v  217 (369)
                      |.+...+.+..+.+|+.+.|.|.+. |.|.+.+.|++++..+.....       .++.+.....       .+.|.|.++
T Consensus         3 ~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~L~i~~~   75 (195)
T 2c5d_C            3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADS-------TQTQVPLGEDEQDDWIVVSQLRITSL   75 (195)
T ss_dssp             CSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEE-------EEEEEECSSSTTSEEEEEEEEEESSC
T ss_pred             CeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCC-------CceEEEEccccccceeeccEEEEEec
Confidence            5666778899999999999999999 999999999999877653211       1122222111       468999999


Q ss_pred             CCCCCEEEEEEEEeCCceEEEE-EEEEEeecCCccc
Q psy12695        218 TMSDSGIYTCRAKNGAGEVFTN-ISLNVIKVETAVA  252 (369)
Q Consensus       218 ~~~D~G~Y~C~a~n~~g~~~~~-~~l~v~~~~~~~~  252 (369)
                      +.+|+|.|.|.+.|..|..... +.|.|...+....
T Consensus        76 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~  111 (195)
T 2c5d_C           76 QLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLE  111 (195)
T ss_dssp             CSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEE
T ss_pred             cccCCcEEEEEEEeCCCceecccEEEEEecCCeEEc
Confidence            9999999999999998875444 7888877664433

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.13  E-value=9.2e-11  Score=107.97  Aligned_cols=88  Identities=32%  Similarity=0.595  Sum_probs=72.4

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...         .++.+    ..+.|.|.++..+|+|.|
T Consensus       296 P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~---------~~~~~----~~~~L~i~~v~~~D~G~Y  362 (384)
T 3kld_A          296 PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTR---------DRIQI----EQGTLNITIVNLSDAGMY  362 (384)
T ss_dssp             EEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCB---------TTEEE----ETTEEEESSCCGGGCEEE
T ss_pred             CccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCC---------ccEEE----eCCEEEEeecChhhCEEE
Confidence            45555667888999999999999999999999999999876421         12221    235899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEee
Q psy12695        226 TCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      +|.|.|..|.....+.|.|..
T Consensus       363 ~C~A~N~~G~~~~~a~L~V~~  383 (384)
T 3kld_A          363 QCVAENKHGVIFSSAELSVIA  383 (384)
T ss_dssp             EEEEEETTEEEEEEEEEEEC-
T ss_pred             EEEEEeCCceEEeceEEEEec
Confidence            999999999999999998863

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.13  E-value=2.4e-11  Score=101.60  Aligned_cols=85  Identities=16%  Similarity=0.209  Sum_probs=56.7

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA  229 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  229 (369)
                      ..+....+.+|+.++|.|.+.|.|.|.|.|+++++.+.....     ...++.+........+.|.+++.+|+|.|+|.|
T Consensus       111 ~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~-----~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A  185 (203)
T 4fa8_A          111 VHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTA-----ANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVG  185 (203)
T ss_dssp             EEEEECCSSCSCCEEEEEEEEEESCCEEEECCC-----------------CCEECTTSCEEEEEEEEECSSCCCCEEEEE
T ss_pred             ecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCccc-----ccceEEEeCCCCEEEEEECCCCHHHCEEEEEEE
Confidence            345567788999999999999999999999987765432111     111222221122234566789999999999999


Q ss_pred             EeCCceEEEE
Q psy12695        230 KNGAGEVFTN  239 (369)
Q Consensus       230 ~n~~g~~~~~  239 (369)
                      .|..|.+...
T Consensus       186 ~N~~G~a~~v  195 (203)
T 4fa8_A          186 KNDKEEAHGV  195 (203)
T ss_dssp             ESSSCEEEEE
T ss_pred             EcCCCEEEEE
Confidence            9999987653

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.12  E-value=4.2e-10  Score=94.42  Aligned_cols=97  Identities=26%  Similarity=0.373  Sum_probs=71.2

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.....      ..++........+.|.|.+++.+|+|.|
T Consensus       109 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  182 (212)
T 2yd6_A          109 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNN------NGRIKQLRSESIGALQIEQSEESDQGKY  182 (212)
T ss_dssp             CEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------------CCEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             ceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCC------CceEEEEecCCeEEEEEcCCCcccCEEE
Confidence            4444456677889999999999999999999999999987653211      1123333334568999999999999999


Q ss_pred             EEEEEeCCceEEE-EEEEEEeecC
Q psy12695        226 TCRAKNGAGEVFT-NISLNVIKVE  248 (369)
Q Consensus       226 ~C~a~n~~g~~~~-~~~l~v~~~~  248 (369)
                      +|.|.|..|.... .+.|.|...+
T Consensus       183 ~C~a~N~~G~~~s~~a~l~~~~~~  206 (212)
T 2yd6_A          183 ECVATNSAGTRYSAPANLYVRGTK  206 (212)
T ss_dssp             EEEEEETTEEEECCCEEEEEEC--
T ss_pred             EEEEECCCCccccccccEEEEecc
Confidence            9999999998654 4677776544

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.12  E-value=1.7e-10  Score=96.28  Aligned_cols=96  Identities=26%  Similarity=0.266  Sum_probs=70.6

Q ss_pred             CeeeccCCeEEEEEE---eeCCCCCeEEEEeCCeEeee-----ccccc---ccCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        154 DVTAEENENVTLSCR---ATGSPVPKIKWIFKEKIIAN-----ISSGL---ANMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~---~~g~p~p~i~W~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      .+++..|+.++|.|.   +.+.|.|.|.|++++.....     .....   ......++......+...|.|.+++.+|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            578899999999995   67889999999997632111     00000   00112234444555677899999999999


Q ss_pred             EEEEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        223 GIYTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       223 G~Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      |.|.|.|.|..|.....+.|.|..++.
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~~p~~  108 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVVKPLT  108 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecCCce
Confidence            999999999999999999999977654

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.11  E-value=1.8e-10  Score=94.76  Aligned_cols=90  Identities=28%  Similarity=0.476  Sum_probs=69.9

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....         ++..   ...+.|.|.++..+|+|.|
T Consensus       101 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~---------~~~~---~~~~~L~i~~~~~~d~G~Y  168 (192)
T 2iep_A          101 PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENS---------RIAV---LESGSLRIHNVQKEDAGQY  168 (192)
T ss_dssp             EEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCS---------SEEE---CTTSCEEESSCCGGGCEEE
T ss_pred             CccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCC---------cEEE---ecCCcEEEecCChhhCEEE
Confidence            444445667888999999999999999999999999987665321         1111   1245799999999999999


Q ss_pred             EEEEEeCCceEE-EEEEEEEeec
Q psy12695        226 TCRAKNGAGEVF-TNISLNVIKV  247 (369)
Q Consensus       226 ~C~a~n~~g~~~-~~~~l~v~~~  247 (369)
                      +|.|.|..|... ..+.|.|..+
T Consensus       169 ~C~a~n~~g~~~s~~~~l~V~~p  191 (192)
T 2iep_A          169 RCVAKNSLGTAYSKLVKLEVEVF  191 (192)
T ss_dssp             EEEEEETTEEEECCCEEEEEEC-
T ss_pred             EEEEEcCCCcEEEEEEEEEEEeC
Confidence            999999999874 4577877654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.11  E-value=1.6e-10  Score=99.85  Aligned_cols=97  Identities=26%  Similarity=0.326  Sum_probs=79.1

Q ss_pred             ceEEEecCCCCCccCCCC---CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQL---DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG  120 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~---~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  120 (369)
                      .+.++.+++.++.++...   ...++.|+|++|+|.   +..|.++++|+.|+|++|+|+.+++..|..+++|+.|+|++
T Consensus        61 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  140 (251)
T 3m19_A           61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT  140 (251)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC
Confidence            568889999998877643   357889999999865   56788889999999999999998888888888999999999


Q ss_pred             cceecccCCcccccCcCcccccc
Q psy12695        121 NPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       121 N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      |.|+.++++.|..+++|...++.
T Consensus       141 N~l~~~~~~~~~~l~~L~~L~L~  163 (251)
T 3m19_A          141 NQLQSIPAGAFDKLTNLQTLSLS  163 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcCCccCHHHcCcCcCCCEEECC
Confidence            99998888888887776655443

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.11  E-value=6.2e-10  Score=102.26  Aligned_cols=101  Identities=29%  Similarity=0.418  Sum_probs=77.6

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeC--CeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFK--EKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      |.+.. +.+..+.+|+.+.|.|.+.|.|.|.|.|+++  +..+......    ...++.+......+.|.|.+++.+|+|
T Consensus         2 P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~L~i~~v~~~D~G   76 (389)
T 2jll_A            2 PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKS----LDGRIEVKGQHGSSSLHIKDVKLSDSG   76 (389)
T ss_dssp             CEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CC----SSSSEEEEECSSEEEEEEESCCGGGCE
T ss_pred             CeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCC----CCCeEEEeccCCcceEEEcccChhhCE
Confidence            34443 5677888999999999999999999999999  7665431110    122344433345679999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEeecCCcc
Q psy12695        224 IYTCRAKNGAGEVFTNISLNVIKVETAV  251 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v~~~~~~~  251 (369)
                      .|.|.|.|..|..+..+.|.|...|...
T Consensus        77 ~Y~C~a~n~~g~~~~~~~l~V~~~P~~~  104 (389)
T 2jll_A           77 RYDCEAASRIGGHQKSMYLDIEYAPKFI  104 (389)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEEEEEEEC
T ss_pred             EEEEEEEeCCCCcceEEEEEEEeCCEEe
Confidence            9999999999999999999998766543

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=99.11  E-value=2.2e-10  Score=87.34  Aligned_cols=105  Identities=24%  Similarity=0.364  Sum_probs=70.9

Q ss_pred             ccCCCCccCCCCCeeeccCCeEEEEEEeeCCCC----CeEEEEeCC-------eEeeecccccc-----cCCcceEEEEe
Q psy12695        142 FACSPNIRPITPDVTAEENENVTLSCRATGSPV----PKIKWIFKE-------KIIANISSGLA-----NMNKRQYIIKT  205 (369)
Q Consensus       142 ~~c~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~----p~i~W~~~~-------~~~~~~~~~~~-----~~~~~~~~~~~  205 (369)
                      +.+...+...+..+.+.+|++++|.|.+.+.+.    +.+.|++++       ..+........     ..-..++.+..
T Consensus         2 ~~~~~~v~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~   81 (126)
T 1eaj_A            2 FARSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTS   81 (126)
T ss_dssp             CCSSCEESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECC
T ss_pred             ccccEEEECCCceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEc
Confidence            344445555567788999999999999987665    349999864       22211111100     01112333221


Q ss_pred             ---ecceeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy12695        206 ---INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       206 ---~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                         ......|.|.+++.+|+|.|.|.+.|..|.....+.|.|..
T Consensus        82 ~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~  125 (126)
T 1eaj_A           82 NDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV  125 (126)
T ss_dssp             SCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ccccCCeEEEEECcCChHHCeEEEEEEEcCCccCCcEEEEEEEc
Confidence               12346899999999999999999999999888888888864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.10  E-value=1.4e-10  Score=94.08  Aligned_cols=83  Identities=24%  Similarity=0.312  Sum_probs=73.9

Q ss_pred             CceEEEecCCCCCccCCC-C--CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQ-L--DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLS  119 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~-~--~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  119 (369)
                      ..+.++.++|+++.++.. +  ...++.|+|++|+|.   +.+|.++++|+.|+|++|+|+.+++.+|..+++|+.|+|+
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence            357899999999988654 3  357999999999955   6789999999999999999999999999999999999999


Q ss_pred             ccceecccC
Q psy12695        120 GNPIQKITH  128 (369)
Q Consensus       120 ~N~l~~~~~  128 (369)
                      +|++.+.+.
T Consensus       111 ~N~~~c~c~  119 (170)
T 3g39_A          111 NNPWDCACS  119 (170)
T ss_dssp             SSCBCTTBG
T ss_pred             CCCCCCCch
Confidence            999998764

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.10  E-value=4.7e-10  Score=99.47  Aligned_cols=96  Identities=30%  Similarity=0.441  Sum_probs=77.2

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEE-eecceeeEEEcccCCCCCE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK-TINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G  223 (369)
                      .|.+...+.++.+.+|+.+.|.|.+.|.|.+.+.|++++..+...        ..++... ...+...|.|.+++.+|+|
T Consensus         4 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~--------~~~~~~~~~~~~~~~L~i~~v~~~d~G   75 (305)
T 2nzi_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD--------GLKYRIQEFKGGYHQLIIASVTDDDAT   75 (305)
T ss_dssp             CCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCC--------SSSEEEEEETTTEEEEEESSCCGGGCS
T ss_pred             CCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccC--------CCeEEEEECCCCEEEEEEccCChhhCe
Confidence            466666778899999999999999999999999999998776521        1122222 2234468999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEeecC
Q psy12695        224 IYTCRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      .|.|.|.|..|.....+.|.|...+
T Consensus        76 ~Y~C~a~n~~g~~~~~~~l~V~~~p  100 (305)
T 2nzi_A           76 VYQVRATNQGGSVSGTASLEVEVPA  100 (305)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECEEE
T ss_pred             EEEEEEEcCCCCccceEEEEEecCC
Confidence            9999999999998888888887654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.09  E-value=1.9e-10  Score=96.43  Aligned_cols=97  Identities=26%  Similarity=0.368  Sum_probs=83.8

Q ss_pred             ceEEEecCCCCCccCCCC---CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQL---DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG  120 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~---~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  120 (369)
                      .+.++.++++++.+|...   ...++.|+|++|+|.   +..|.++++|++|+|++|+|+.+++..|..+++|+.|+|++
T Consensus        30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  109 (208)
T 2o6s_A           30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT  109 (208)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence            568999999999888754   357999999999965   56789999999999999999999999999999999999999


Q ss_pred             cceecccCCcccccCcCcccccc
Q psy12695        121 NPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       121 N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      |.|+.+++..|..+++|...++.
T Consensus       110 N~l~~~~~~~~~~l~~L~~L~l~  132 (208)
T 2o6s_A          110 NQLQSLPDGVFDKLTQLKDLRLY  132 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcCcccCHhHhccCCcCCEEECC
Confidence            99999998888888887665543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.09  E-value=9.6e-11  Score=112.32  Aligned_cols=82  Identities=27%  Similarity=0.336  Sum_probs=76.4

Q ss_pred             eEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccccccccccccccee
Q psy12695         48 ETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ  124 (369)
Q Consensus        48 ~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~  124 (369)
                      +.++|++++|+.||..++..++.|+|++|+|.   +.+|.++++|++|+|++|+|+.+++.+|.++++|++|+|++|.|+
T Consensus         3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~   82 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV   82 (520)
T ss_dssp             CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred             ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence            57999999999999999999999999999965   578999999999999999999998889999999999999999999


Q ss_pred             cccCC
Q psy12695        125 KITHE  129 (369)
Q Consensus       125 ~~~~~  129 (369)
                      .++..
T Consensus        83 ~lp~~   87 (520)
T 2z7x_B           83 KISCH   87 (520)
T ss_dssp             EEECC
T ss_pred             ecCcc
Confidence            98876

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=5.7e-10  Score=82.00  Aligned_cols=81  Identities=20%  Similarity=0.382  Sum_probs=61.9

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      .++.+.+|+.++|.|.+. .|.+.+.|++++..+...         .++.+........|.|.+++.+|+|.|.|.+.| 
T Consensus        19 ~~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~---------~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~-   87 (102)
T 2eo1_A           19 REVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSS---------SKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG-   87 (102)
T ss_dssp             EEEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCC---------SSEEEEEETTEEEEEETTCCTTTCSCEEEEETT-
T ss_pred             ccEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCC---------CCEEEEEcCCEEEEEECCCCcccCEEEEEEcCC-
Confidence            456889999999999998 888999999999876421         133333334457899999999999999999853 


Q ss_pred             CceEEEEEEEEEeec
Q psy12695        233 AGEVFTNISLNVIKV  247 (369)
Q Consensus       233 ~g~~~~~~~l~v~~~  247 (369)
                         ....+.|.|..+
T Consensus        88 ---~~~~~~l~V~~p   99 (102)
T 2eo1_A           88 ---QQLSFRLQVAGQ   99 (102)
T ss_dssp             ---EECCEEEEEESC
T ss_pred             ---CcEEEEEEEeCC
Confidence               345577777654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.09  E-value=1.8e-10  Score=93.69  Aligned_cols=83  Identities=25%  Similarity=0.338  Sum_probs=73.8

Q ss_pred             CceEEEecCCCCCccCCC-C--CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQ-L--DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLS  119 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~-~--~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  119 (369)
                      ..+.++.++|.++.++.. +  ...++.|+|++|+|.   +..|.++++|+.|+|++|+|+.+++.+|..+++|+.|+|+
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence            357899999999988653 3  357999999999965   6679999999999999999999999999999999999999


Q ss_pred             ccceecccC
Q psy12695        120 GNPIQKITH  128 (369)
Q Consensus       120 ~N~l~~~~~  128 (369)
                      +|++.+.+.
T Consensus       114 ~N~~~c~~~  122 (174)
T 2r9u_A          114 NNPWDCECR  122 (174)
T ss_dssp             SSCBCTTBG
T ss_pred             CCCcccccc
Confidence            999998875

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.08  E-value=7.8e-10  Score=98.47  Aligned_cols=87  Identities=28%  Similarity=0.434  Sum_probs=71.1

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEee-cceeeEEEcccCCCCCEEEEEEEE
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI-NSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..+....         ++.+... .....|.|.+++.+|+|.|+|.|.
T Consensus       229 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~---------~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  299 (317)
T 2y25_A          229 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDD---------HCNLKFEAGRTAYFTINGVSTADSGKYGLVVK  299 (317)
T ss_dssp             CSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCS---------SEEECCBTTTEEEEEEBSCCSTTCEEEEEEEE
T ss_pred             CccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCC---------cEEEEEcCCCEEEEEECCCCHHHCEEEEEEEE
Confidence            445788999999999999999999999999998775321         2222222 334589999999999999999999


Q ss_pred             eCCceEEEEEEEEEeec
Q psy12695        231 NGAGEVFTNISLNVIKV  247 (369)
Q Consensus       231 n~~g~~~~~~~l~v~~~  247 (369)
                      |..|..+..+.|.|..+
T Consensus       300 N~~g~~~~~~~l~V~~P  316 (317)
T 2y25_A          300 NKYGSETSDFTVSVFIP  316 (317)
T ss_dssp             ETTEEEEEEEEEEEECC
T ss_pred             eCCCeEEEEEEEEEEcC
Confidence            99999999999988754

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.08  E-value=6.1e-10  Score=90.81  Aligned_cols=99  Identities=22%  Similarity=0.404  Sum_probs=72.9

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEee--cceeeEEEcccCCCCCE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI--NSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G  223 (369)
                      |.+...+.++.+.+|+.+.|.|.+.|.|.+.+.|++++..+....         +......  ...+.|.|.+++.+|+|
T Consensus         3 ~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~---------~~~~~~~~~~~~~~L~i~~~~~~d~G   73 (182)
T 1rhf_A            3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLD---------QLYIPVSEQHWIGFLSLKSVERSDAG   73 (182)
T ss_dssp             ----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSE---------EEEEEEETTEEEEEEEESSCCGGGCE
T ss_pred             CEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCC---------ceEEEecCCCceEEEEEeecCcccCe
Confidence            456667788999999999999999999999999999987664321         1111111  12468999999999999


Q ss_pred             EEEEEEEeCCce-EEEEEEEEEeecCCcccC
Q psy12695        224 IYTCRAKNGAGE-VFTNISLNVIKVETAVAQ  253 (369)
Q Consensus       224 ~Y~C~a~n~~g~-~~~~~~l~v~~~~~~~~~  253 (369)
                      .|.|.+.|..|. .+..+.|.|..++.....
T Consensus        74 ~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~  104 (182)
T 1rhf_A           74 RYWCQVEDGGETEISQPVWLTVEGVPFFTVE  104 (182)
T ss_dssp             EEEEEESSCTTCEECCCEEEEEECSCEEEEC
T ss_pred             EEEEEEEcCCCcEEEEEEEEEEecCCeEEec
Confidence            999999998775 456788888876644333

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.08  E-value=1.4e-09  Score=89.27  Aligned_cols=97  Identities=14%  Similarity=0.280  Sum_probs=73.4

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCCC-CCeEEEEe-CCeEeeecccccccCCcceEEE-EeecceeeEEEcccCCCCCE
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGSP-VPKIKWIF-KEKIIANISSGLANMNKRQYII-KTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p-~p~i~W~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G  223 (369)
                      .+...+.+..+.+|+.+.|.|.+.+.| .+.+.|++ ++..+...        ..++.. ......+.|.|.+++.+|+|
T Consensus         4 ~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~--------~~~~~~~~~~~~~~~L~i~~~~~~d~G   75 (191)
T 1epf_A            4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPN--------QQRISVVWNDDDSSTLTIYNANIDDAG   75 (191)
T ss_dssp             CEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCB--------SSSEEEEEEETTEEEEEECSCCGGGCE
T ss_pred             EEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCC--------CCeEEEEECCCCceEEEEccCCcccCE
Confidence            344567788999999999999999977 78999999 66655421        112222 22345678999999999999


Q ss_pred             EEEEEEEeCC-ceEEEEEEEEEeecCCcc
Q psy12695        224 IYTCRAKNGA-GEVFTNISLNVIKVETAV  251 (369)
Q Consensus       224 ~Y~C~a~n~~-g~~~~~~~l~v~~~~~~~  251 (369)
                      .|.|.+.|.. +.....+.|.|..++...
T Consensus        76 ~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~  104 (191)
T 1epf_A           76 IYKCVVTAEDGTQSEATVNVKIFQKLMFK  104 (191)
T ss_dssp             EEEEEEEETTTEEEEEEEEEEEECCSEEE
T ss_pred             EEEEEEEcCCCcceEEEEEEEeecCceEe
Confidence            9999999998 567777888887665443

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.07  E-value=3.5e-10  Score=100.91  Aligned_cols=83  Identities=17%  Similarity=0.253  Sum_probs=67.4

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ....+.+|+.++|.|.+.|.|.| .|.|+++++.+....               ....+.|.|.+++.+|+|.|+|.|.|
T Consensus       225 ~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~---------------~~~~~~L~i~~v~~~d~G~Y~C~a~N  289 (313)
T 4fqp_A          225 DNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA---------------VAQGAQLLIRPVDKPINTTLICNVTN  289 (313)
T ss_dssp             CSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE---------------EEETTEEEECCCSSCCEEEEEEEEEC
T ss_pred             cceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCce---------------EEeCCEEEECcCChhhCEEEEEEEEe
Confidence            44556778999999999999999 599999987654210               01245799999999999999999999


Q ss_pred             CCceEEEEEEEEEeecCCc
Q psy12695        232 GAGEVFTNISLNVIKVETA  250 (369)
Q Consensus       232 ~~g~~~~~~~l~v~~~~~~  250 (369)
                      ..|..+..+.|.|...|+.
T Consensus       290 ~~G~~~~~~~l~V~~~PP~  308 (313)
T 4fqp_A          290 ALGARQAELTVQVKEGPPH  308 (313)
T ss_dssp             SSCEEEEEEEEEEECCC--
T ss_pred             CCCcEEEEEEEEEEeCCCC
Confidence            9999999999999887753

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.06  E-value=4.5e-10  Score=92.95  Aligned_cols=86  Identities=33%  Similarity=0.455  Sum_probs=69.4

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEE
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYT  226 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  226 (369)
                      .+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...         ..    .....+.|.|.++..+|+|.|+
T Consensus       115 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~---------~~----~~~~~~~L~i~~v~~~d~G~Y~  181 (201)
T 3s97_C          115 DIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPST---------AE----ISTSGAVLKIFNIQLEDEGIYE  181 (201)
T ss_dssp             EEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTT---------CE----EETTTTEEEECSCCGGGCEEEE
T ss_pred             ceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCc---------ee----ecCCCCEEEEccCChhhCEEEE
Confidence            3443445778899999999999999999999999998754321         01    1223568999999999999999


Q ss_pred             EEEEeCCceEEEEEEEEEe
Q psy12695        227 CRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       227 C~a~n~~g~~~~~~~l~v~  245 (369)
                      |.|.|..|.....+.|.|.
T Consensus       182 C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          182 CEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEecCCceeeeEEEEEe
Confidence            9999999999999888875

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.06  E-value=3.6e-10  Score=96.29  Aligned_cols=95  Identities=22%  Similarity=0.342  Sum_probs=77.7

Q ss_pred             ceEEEecCCCCCccCCC-C--CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQ-L--DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG  120 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~-~--~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  120 (369)
                      .+.++.+++.++.++.. +  ...++.|+|++|+|.   +..|.++++|+.|+|++|+|+.+++..|..+++|+.|+|++
T Consensus        42 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~  121 (229)
T 3e6j_A           42 AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC  121 (229)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccC
Confidence            56899999999987543 3  357999999999965   56789999999999999999999999999999999999999


Q ss_pred             cceecccCCcccccCcCccccc
Q psy12695        121 NPIQKITHEAFINVPKLNLEDF  142 (369)
Q Consensus       121 N~l~~~~~~~f~~l~~l~~~~~  142 (369)
                      |.|+.++. .|..+++|...++
T Consensus       122 N~l~~lp~-~~~~l~~L~~L~L  142 (229)
T 3e6j_A          122 NKLTELPR-GIERLTHLTHLAL  142 (229)
T ss_dssp             SCCCSCCT-TGGGCTTCSEEEC
T ss_pred             CcccccCc-ccccCCCCCEEEC
Confidence            99998864 4566666655443

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=99.05  E-value=9.8e-10  Score=83.30  Aligned_cols=85  Identities=18%  Similarity=0.285  Sum_probs=60.6

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      +...|..+.+.+|++++|.|.+.+.+.+.+.|+++.  .   .+.............++.+........|.|.+++.+|+
T Consensus         6 v~q~p~~v~v~~G~~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds   85 (119)
T 2e27_L            6 MTQSPSSLSASLGGKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSGRDYSFSISNLEPEDA   85 (119)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             eEecCCeEEEeCCCCEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccCCEEEEEECCCChHHC
Confidence            334567788999999999999999888899999853  1   12211111111113456555455667899999999999


Q ss_pred             EEEEEEEEeC
Q psy12695        223 GIYTCRAKNG  232 (369)
Q Consensus       223 G~Y~C~a~n~  232 (369)
                      |.|.|.+.|.
T Consensus        86 G~Y~C~~~~~   95 (119)
T 2e27_L           86 ATYYCLQYDN   95 (119)
T ss_dssp             EEEEEEECGG
T ss_pred             EEEEEEEccC
Confidence            9999999875

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.05  E-value=5.8e-10  Score=91.65  Aligned_cols=96  Identities=32%  Similarity=0.442  Sum_probs=73.6

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .|.+...+..+.+.+|+.+.|.|.+.|.|.+.+.|++++..+...        ..++.+  ......|.|.+++.+|+|.
T Consensus         7 ~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~--------~~~~~~--~~~~~~L~i~~~~~~d~G~   76 (192)
T 2iep_A            7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLF--------DTRYSI--RENGQLLTILSVEDSDDGI   76 (192)
T ss_dssp             EEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTT--------CTTEEE--EGGGTEEEESSCCGGGCEE
T ss_pred             CceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEcccc--------CccEEE--cCCccEEEEcCCCcccCeE
Confidence            355666677788999999999999999999999999998766421        112222  2234579999999999999


Q ss_pred             EEEEEEeCCce-EEEEEEEEEeecCCc
Q psy12695        225 YTCRAKNGAGE-VFTNISLNVIKVETA  250 (369)
Q Consensus       225 Y~C~a~n~~g~-~~~~~~l~v~~~~~~  250 (369)
                      |.|.+.|..|. ....+.+.|...+..
T Consensus        77 Y~C~~~~~~~~~~~~~~~l~v~~~p~~  103 (192)
T 2iep_A           77 YCCTANNGVGGAVESCGALQVKMKPKI  103 (192)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEEEEE
T ss_pred             EEEEEEcCCCceeEeEEEEEEEeCCcc
Confidence            99999998887 556677777765543

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=99.05  E-value=7.4e-10  Score=82.57  Aligned_cols=85  Identities=16%  Similarity=0.291  Sum_probs=60.6

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      +...|..+.+.+|++++|.|.+.+.+.+.+.|+++.  .   .+.............++.+........|.|.+++.+|+
T Consensus         6 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds   85 (109)
T 2q20_A            6 MTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDI   85 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEecCCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccCCEEEEEECCCChhhC
Confidence            444567789999999999999998888899999864  1   12211111111113455555445567899999999999


Q ss_pred             EEEEEEEEeC
Q psy12695        223 GIYTCRAKNG  232 (369)
Q Consensus       223 G~Y~C~a~n~  232 (369)
                      |.|.|.+.+.
T Consensus        86 G~Y~C~~~~~   95 (109)
T 2q20_A           86 ATYYCQQYDN   95 (109)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEEEEeeC
Confidence            9999999874

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.05  E-value=8.9e-10  Score=90.14  Aligned_cols=78  Identities=17%  Similarity=0.272  Sum_probs=67.2

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      +....+.+|+.++|.|.+.+.|.|.+.|++++..+.                   ...+.|.|.+++.+|+|.|+|.|.|
T Consensus       104 ~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~-------------------~~~~~L~i~~v~~~d~G~Y~C~a~n  164 (184)
T 2ny1_B          104 NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-------------------QGGKTLSVSQLELQDSGTWTCTVLQ  164 (184)
T ss_dssp             SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEE-------------------EESSEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccc-------------------cCceEEEEecCCcCCCeEEEEEEEE
Confidence            345578999999999999999999999999875432                   1256899999999999999999999


Q ss_pred             CCceEEEEEEEEEeecC
Q psy12695        232 GAGEVFTNISLNVIKVE  248 (369)
Q Consensus       232 ~~g~~~~~~~l~v~~~~  248 (369)
                      ..+.....+.|.|...+
T Consensus       165 ~~~~~~~~~~l~V~~~p  181 (184)
T 2ny1_B          165 NQKKVEFKIDIVVLAFQ  181 (184)
T ss_dssp             TTEEEEEEEEEEEECCC
T ss_pred             CCceEEEEEEEEEEecC
Confidence            99999999999998765

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.05  E-value=6.2e-10  Score=107.95  Aligned_cols=93  Identities=23%  Similarity=0.345  Sum_probs=74.6

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|+++++.+...+        .++.+......+.|.|.+++.+|+|.
T Consensus       477 ~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~--------~~~~~~~~~~~~~L~i~~~~~~d~G~  548 (570)
T 3b43_A          477 PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRES--------DNIWISYSENIATLQFSRAEPANAGK  548 (570)
T ss_dssp             CCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCT--------TTEEECCCSSEEEEEESSCCTTCCEE
T ss_pred             CCcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCC--------CeEEEEECCCEEEEEECcCCHHHCEE
Confidence            3556666678889999999999999999999999999986554221        12222223346789999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEe
Q psy12695        225 YTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      |+|.|.|..|.....+.|.|.
T Consensus       549 Y~C~a~N~~G~~~~~a~L~V~  569 (570)
T 3b43_A          549 YTCQIKNEAGTQECFATLSVL  569 (570)
T ss_dssp             EEEEEECSSCEEEEEEEECCB
T ss_pred             EEEEEEECCcEEEEEEEEEEe
Confidence            999999999999999998775

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.04  E-value=4.1e-10  Score=94.44  Aligned_cols=92  Identities=26%  Similarity=0.411  Sum_probs=71.5

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...        ..++..    ..+.|.|.+++.+|+|.|
T Consensus       111 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~--------~~~~~~----~~~~L~i~~v~~~d~G~Y  178 (212)
T 2yd1_A          111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMS--------NPRYSL----KDGFLQIENSREEDQGKY  178 (212)
T ss_dssp             CEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTT--------STTEEE----ETTEEEECSCCGGGCEEE
T ss_pred             CeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccC--------CCeEEc----cCCeEEEccCChhhCEEE
Confidence            44555566788899999999999999999999999998776431        112221    235899999999999999


Q ss_pred             EEEEEeCCceEEEE-EEEEEeecCC
Q psy12695        226 TCRAKNGAGEVFTN-ISLNVIKVET  249 (369)
Q Consensus       226 ~C~a~n~~g~~~~~-~~l~v~~~~~  249 (369)
                      +|.|.|..|..... +.|.|.....
T Consensus       179 ~C~a~N~~G~~~s~~~~l~V~~~~~  203 (212)
T 2yd1_A          179 ECVAENSMGTEHSKATNLYVKVRRV  203 (212)
T ss_dssp             EEEEEETTEEEECCCEEEEEEC---
T ss_pred             EEEeecCCCceeEEEEEEEEEeccc
Confidence            99999999998765 7888876543

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=99.04  E-value=9e-10  Score=81.96  Aligned_cols=84  Identities=19%  Similarity=0.220  Sum_probs=58.6

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCe-----EeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK-----IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      ..|..+.+.+|++++|.|.+.+.+.+.+.|+++..     .+.............++.+........|.|.+++.+|+|.
T Consensus         6 q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~   85 (108)
T 1qfw_M            6 QSPKSMSMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSATDFTLTISSVQAEDFAD   85 (108)
T ss_dssp             EECSCEECCTTCCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCSSEEEEEESSCCTTCCSE
T ss_pred             EeCCeEEEcCCCCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCCCEEEEEECCCChhhCEE
Confidence            34677899999999999999988888899998541     1221111110011234544333445689999999999999


Q ss_pred             EEEEEEeCC
Q psy12695        225 YTCRAKNGA  233 (369)
Q Consensus       225 Y~C~a~n~~  233 (369)
                      |.|.+.+..
T Consensus        86 Y~C~~~~~~   94 (108)
T 1qfw_M           86 YHCGQTYNH   94 (108)
T ss_dssp             EEEEECSSS
T ss_pred             EEEEEccCC
Confidence            999998753

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.04  E-value=1.4e-09  Score=89.59  Aligned_cols=86  Identities=19%  Similarity=0.353  Sum_probs=69.5

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCC-CCCEEEEEEEE
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM-SDSGIYTCRAK  230 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~  230 (369)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..+...         .++........+.|.|.++.. +|+|.|+|.|.
T Consensus       110 ~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~---------~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~  180 (197)
T 3lcy_A          110 KEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNS---------ENITIENTEHYTHLVMKNVQRKTHAGKYKVQLS  180 (197)
T ss_dssp             CSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC---------SSEEEEECSSEEEEEESSCCHHHHCEEEEEEEE
T ss_pred             CcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCC---------CceEEEEcCCEEEEEEccccchhhCceEEEEEE
Confidence            34567889999999999999999999999998776432         123333333447899999985 89999999999


Q ss_pred             eCCceEEEEEEEEEee
Q psy12695        231 NGAGEVFTNISLNVIK  246 (369)
Q Consensus       231 n~~g~~~~~~~l~v~~  246 (369)
                      |..|.....+.|.|..
T Consensus       181 n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          181 NVFGTVDAILDVEIQD  196 (197)
T ss_dssp             CSSCEEEEEEEEEEEC
T ss_pred             cCcCceEEEEEEEEec
Confidence            9999999999988864

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.04  E-value=4.7e-09  Score=81.78  Aligned_cols=98  Identities=18%  Similarity=0.184  Sum_probs=67.1

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCC---CeEEEEeCCeE--eeeccccc------ccCCcceEEEEe---ecceeeEEEcc
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPV---PKIKWIFKEKI--IANISSGL------ANMNKRQYIIKT---INSLSNLTIVA  216 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~---p~i~W~~~~~~--~~~~~~~~------~~~~~~~~~~~~---~~~~~~L~I~~  216 (369)
                      .+..+.+.+|++++|.|.+.+.+.   +.+.|++++..  +.......      ...-..++.+..   ..+...|.|.+
T Consensus        12 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~   91 (139)
T 1pko_A           12 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQN   91 (139)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESS
T ss_pred             CCCCEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEcc
Confidence            445788999999999999986543   68999997641  11110000      000112333322   22356899999


Q ss_pred             cCCCCCEEEEEEEEeCCceEEEEEEEEEeecC
Q psy12695        217 VTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       217 v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      ++.+|+|.|+|.+.+..|.....+.|.|..+.
T Consensus        92 v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~P~  123 (139)
T 1pko_A           92 VRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF  123 (139)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred             CCHHHCEEEEEEEEcCCCceEEEEEEEEecCc
Confidence            99999999999999999988888999998543

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.04  E-value=3.3e-10  Score=94.72  Aligned_cols=83  Identities=19%  Similarity=0.293  Sum_probs=63.7

Q ss_pred             CCeeeccCCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        153 PDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ....+.+|+.+.|.|.+ .|.|.|.+.|++++..........           .....+.|.|.+++.+|+|.|+|.|.|
T Consensus       129 ~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~-----------~~~~~~~L~i~~~~~~d~G~Y~C~a~N  197 (214)
T 3jz7_A          129 VDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWL-----------AEMTSPVISVKNASSEYSGTYSCTVQN  197 (214)
T ss_dssp             EESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGG-----------GGTTSSEEEECSCCGGGCEEEEEEEEC
T ss_pred             eecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCccce-----------eccCCCEEEEecCCHHHCEEEEEEEEc
Confidence            34457889999999999 899999999999543221111000           011245899999999999999999999


Q ss_pred             CCceEEEEEEEEEee
Q psy12695        232 GAGEVFTNISLNVIK  246 (369)
Q Consensus       232 ~~g~~~~~~~l~v~~  246 (369)
                      ..|.....+.|.|..
T Consensus       198 ~~g~~~~~~~l~V~~  212 (214)
T 3jz7_A          198 RVGSDQCMLRLDVVP  212 (214)
T ss_dssp             SSCEEEEEEEECCBC
T ss_pred             CCCcEEEEEEEEEeC
Confidence            999999998888874

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.03  E-value=1.1e-09  Score=96.23  Aligned_cols=85  Identities=41%  Similarity=0.626  Sum_probs=66.9

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ...+.+|+.+.|.|.+.|.|.|.+.|++++..+....         ++.  .....+.|.|.++..+|+|.|+|.|.|..
T Consensus       203 ~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~---------~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~  271 (291)
T 2wim_A          203 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE---------KYI--LKGSNTELTVRNIINSDGGPYVCRATNKA  271 (291)
T ss_dssp             ECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTT---------TEE--ECSTTCEEEEESCCSTTCEEEEEEEEETT
T ss_pred             cceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCc---------cEE--EcCCccEEEEeeCCcccCEEEEEEEEECC
Confidence            4567889999999999999999999999998765321         111  12235689999999999999999999999


Q ss_pred             ceEEEEEEEEEeecCC
Q psy12695        234 GEVFTNISLNVIKVET  249 (369)
Q Consensus       234 g~~~~~~~l~v~~~~~  249 (369)
                      |.....+.|.|...+.
T Consensus       272 G~~~~~~~l~v~~~~~  287 (291)
T 2wim_A          272 GEDEKQAFLQVFVQHH  287 (291)
T ss_dssp             EEEEEEEEEEC-----
T ss_pred             CceeeeEEEEEEEecc
Confidence            9999999999987654

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.03  E-value=1.4e-09  Score=105.07  Aligned_cols=92  Identities=26%  Similarity=0.355  Sum_probs=78.9

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .|.+...+.+..+.+|+++.+.|.+.|.|.|.++|++++..+..         ..++.+........|.|.++..+|+|.
T Consensus       482 ~P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~---------s~~~~i~~~~~~~~L~I~~~~~~D~G~  552 (573)
T 3uto_A          482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQ---------SVKYMKRYNGNDYGLTINRVKGDDKGE  552 (573)
T ss_dssp             SCEEEECCCCEEECTTSCEEEEEEEECSSCCEEEEEETTEECCS---------SSSEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCccccCCCCcEEeCCCcEEEEEEEEccCCCeEEEEECCEEccc---------CCcEEEEEcCCEEEEEEcCCCcccCcE
Confidence            45566667888999999999999999999999999999987753         234555556677889999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEe
Q psy12695        225 YTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      |+|.|.|..|..++.+.|+|.
T Consensus       553 Yt~~A~N~~G~~~~~v~l~Vt  573 (573)
T 3uto_A          553 YTVRAKNSYGTKEEIVFLNVT  573 (573)
T ss_dssp             EEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEeCCCcEEEEEEEEEC
Confidence            999999999999999999874

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.03  E-value=2.5e-09  Score=89.52  Aligned_cols=99  Identities=12%  Similarity=0.204  Sum_probs=70.5

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeC--CeE---eeecccccccCCcceEEEEeecceeeEEEcccCCCC
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFK--EKI---IANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD  221 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D  221 (369)
                      .+...+ .+.+.+|+.++|.|.+.+.|.+.+.|++.  +..   +.............++..........|.|.+++.+|
T Consensus         3 ~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   81 (213)
T 3mj8_L            3 TLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGD   81 (213)
T ss_dssp             CBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhh
Confidence            344555 88899999999999999999999999983  211   111111111112234554445667889999999999


Q ss_pred             CEEEEEEEEeCCc---eEEEEEEEEEee
Q psy12695        222 SGIYTCRAKNGAG---EVFTNISLNVIK  246 (369)
Q Consensus       222 ~G~Y~C~a~n~~g---~~~~~~~l~v~~  246 (369)
                      +|.|.|.+.|..|   .....+.|.|..
T Consensus        82 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  109 (213)
T 3mj8_L           82 EADYYCQSWDGTNSAWVFGSGTKVTVLG  109 (213)
T ss_dssp             CEEEEEEEEETTTTEEEEBCCEEEEEEC
T ss_pred             CEEEEEEeccCCcceeEEcCceEEEEeC
Confidence            9999999999988   445567777773

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.03  E-value=9.2e-10  Score=97.66  Aligned_cols=93  Identities=24%  Similarity=0.437  Sum_probs=69.9

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEe--ecceeeEEEcccCC-CC
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT--INSLSNLTIVAVTM-SD  221 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~-~D  221 (369)
                      +|.+...+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+...          ++....  ......|.|.+++. +|
T Consensus         6 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~----------~~~~~~~~~~~~~~L~i~~~~~~~D   75 (304)
T 2yd9_A            6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ----------RFETIEFDESAGAVLRIQPLRTPRD   75 (304)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CT----------TEEEEEETTTTEEEEEECSCCTTTT
T ss_pred             CCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC----------ceEEEEecCCCceEEEEecccccCC
Confidence            466677788899999999999999999999999999998765321          111111  12236899999998 99


Q ss_pred             CEEEEEEEEeCCceEEEEEEEEEeec
Q psy12695        222 SGIYTCRAKNGAGEVFTNISLNVIKV  247 (369)
Q Consensus       222 ~G~Y~C~a~n~~g~~~~~~~l~v~~~  247 (369)
                      +|.|+|.|.|..|.....+.|.|...
T Consensus        76 ~G~Y~C~a~n~~g~~~~~~~l~V~~~  101 (304)
T 2yd9_A           76 ENVYECVAQNSVGEITVHAKLTVLRE  101 (304)
T ss_dssp             CSEEEEEEECSSCEECCEEEEEEECG
T ss_pred             CeEEEEEEECCCCeEEEEEEEEEecc
Confidence            99999999999999888889988765

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=99.03  E-value=9.1e-10  Score=83.63  Aligned_cols=97  Identities=19%  Similarity=0.275  Sum_probs=64.8

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      ..|..+.+.+|++++|.|.+.+.+.+.+.|+++.  .   .+.............++.+........|.|.+++.+|+|.
T Consensus         6 q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~   85 (120)
T 1mqk_L            6 QTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGS   85 (120)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             ecCCeEEEcCCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccCCEEEEEECCCCHHHCEE
Confidence            3467788999999999999998888899999853  2   1221111111111345655545566789999999999999


Q ss_pred             EEEEEEeCC-ce-EEEEEEEEEee
Q psy12695        225 YTCRAKNGA-GE-VFTNISLNVIK  246 (369)
Q Consensus       225 Y~C~a~n~~-g~-~~~~~~l~v~~  246 (369)
                      |.|.+.|.. .. ......|.|..
T Consensus        86 Y~C~~~~~~~~~~fg~gt~L~V~~  109 (120)
T 1mqk_L           86 YYCQHHYGTPPLTFGGGTKLEIKR  109 (120)
T ss_dssp             EEEEECSSSSSCCBCCCEEEEEC-
T ss_pred             EEEEEEeCCCceEECCCeEEEEec
Confidence            999998753 21 22234555543

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.03  E-value=6.6e-10  Score=92.80  Aligned_cols=93  Identities=26%  Similarity=0.421  Sum_probs=70.5

Q ss_pred             CccCCCCCeeeccCCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        147 NIRPITPDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      .+...+....+.+|+.+.|.|.+ .|.|.|.+.|++++..+....        .++..    ..+.|.|.+++.+|+|.|
T Consensus       113 ~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~--------~~~~~----~~~~L~i~~~~~~d~G~Y  180 (212)
T 2v9r_A          113 DFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKD--------ERITI----RGGKLMITYTRKSDAGKY  180 (212)
T ss_dssp             SCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTS--------TTEEE----ETTEEEESSCCGGGCEEE
T ss_pred             cceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCc--------ceEEc----cCCeEEEeeCCHhhCeeE
Confidence            34445677889999999999999 899999999999998765321        12211    245899999999999999


Q ss_pred             EEEEEeCCceEEEE-EEEEEeecCCcc
Q psy12695        226 TCRAKNGAGEVFTN-ISLNVIKVETAV  251 (369)
Q Consensus       226 ~C~a~n~~g~~~~~-~~l~v~~~~~~~  251 (369)
                      .|.|.|..|..... +.|.|...|...
T Consensus       181 ~C~a~N~~g~~~s~~~~l~V~~~P~~~  207 (212)
T 2v9r_A          181 VCVGTNMVGERESEVAELTVLERPSFV  207 (212)
T ss_dssp             EEEEEETTEEEECCCEEEEEEC-----
T ss_pred             EEEEecccCceecceEEEEEEeCchHh
Confidence            99999999986654 889888776543

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.03  E-value=1.1e-09  Score=89.92  Aligned_cols=90  Identities=21%  Similarity=0.202  Sum_probs=70.5

Q ss_pred             CCccCCCCCeeecc-CCeEEEEEEeeCCCC--CeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        146 PNIRPITPDVTAEE-NENVTLSCRATGSPV--PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       146 p~i~~~~~~~~~~~-G~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      |.+.. +....+.+ |+.+.|.|.+.+.|.  +.+.|++++..+.....              ....+.|.|.+++.+|+
T Consensus         4 P~i~~-~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~--------------~~~~~~L~i~~~~~~d~   68 (190)
T 2wv3_A            4 PRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK--------------NASNMEYRINKPRAEDS   68 (190)
T ss_dssp             CEEEE-CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCB--------------CCSEEEEEESSCCGGGC
T ss_pred             Ccccc-cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccce--------------EeccEEEEEecCCcccC
Confidence            44443 45566666 999999999999887  78999999876642110              01357899999999999


Q ss_pred             EEEEEEEEeCCceEEEEEEEEEeecCCcc
Q psy12695        223 GIYTCRAKNGAGEVFTNISLNVIKVETAV  251 (369)
Q Consensus       223 G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~  251 (369)
                      |.|.|.+.|. |.....+.|.|...+...
T Consensus        69 G~Y~C~~~n~-~~~~~~~~l~V~~~p~~~   96 (190)
T 2wv3_A           69 GEYHCVYHFV-SAPKANATIEVKAAPDIT   96 (190)
T ss_dssp             EEEEEEEEET-TEEEEEEEEEEECCCEEE
T ss_pred             EEEEEEEEeC-CcccccEEEEEecCCccc
Confidence            9999999999 888899999998776443

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.03  E-value=6.4e-10  Score=97.93  Aligned_cols=100  Identities=17%  Similarity=0.255  Sum_probs=70.2

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCe-EEEEeCCeEeeecccccccCCcceEEEE-eecceeeEEEcccCCCCC
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPK-IKWIFKEKIIANISSGLANMNKRQYIIK-TINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~  222 (369)
                      .|.+...+....+.+|+.+.|.|.+.|.|.|. +.|++++..+......   .....+... .....+.|.|.+++.+|+
T Consensus       188 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~d~  264 (290)
T 2o26_X          188 IPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQV---KHNSWHRGDFNYERQETLTISSARVDDS  264 (290)
T ss_dssp             CCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCE---ECCEEEEETTEEEEEEEEEESSCCSSSC
T ss_pred             CCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceee---cccccccCceeeEEEEEEEEcCCCcccC
Confidence            34454555667889999999999999999997 9999988763100000   000001000 112356899999999999


Q ss_pred             EEEEEEEEeCCceEEEEEEEEEeec
Q psy12695        223 GIYTCRAKNGAGEVFTNISLNVIKV  247 (369)
Q Consensus       223 G~Y~C~a~n~~g~~~~~~~l~v~~~  247 (369)
                      |.|.|.|.|..|.....+.|.|...
T Consensus       265 G~Y~C~a~N~~g~~~~~~~l~V~~~  289 (290)
T 2o26_X          265 GVFMCYANNTFGSANVTTTLKVVEK  289 (290)
T ss_dssp             EEEEEEEECSSCEEEEEEEECC---
T ss_pred             eEEEEEEeCCCCcEEEEEEEEEEeC
Confidence            9999999999999998888888654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.03  E-value=2.6e-10  Score=92.95  Aligned_cols=97  Identities=18%  Similarity=0.195  Sum_probs=81.2

Q ss_pred             ceEEEecCCCCCccCCC--CCCCccEEEeecceeCh-hhccCCcccCeeeccCCcccccCCcccccccccccccccccce
Q psy12695         47 KETVLCKAKNFTTIPEQ--LDVGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI  123 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~--~~~~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l  123 (369)
                      .+.+++++++++.+|..  +.+.++.|+|++|+|.. ..|.++++|+.|+|++|+|+.+++..|..+++|+.|+|++|.|
T Consensus        21 L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i  100 (176)
T 1a9n_A           21 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL  100 (176)
T ss_dssp             CEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred             ceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC
Confidence            57899999999988752  23489999999999764 5788999999999999999999988889999999999999999


Q ss_pred             ecccC-CcccccCcCcccccc
Q psy12695        124 QKITH-EAFINVPKLNLEDFA  143 (369)
Q Consensus       124 ~~~~~-~~f~~l~~l~~~~~~  143 (369)
                      +.++. ..|..+++|...++.
T Consensus       101 ~~~~~~~~l~~l~~L~~L~l~  121 (176)
T 1a9n_A          101 VELGDLDPLASLKSLTYLCIL  121 (176)
T ss_dssp             CCGGGGGGGGGCTTCCEEECC
T ss_pred             CcchhhHhhhcCCCCCEEEec
Confidence            98875 467777776554443

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.03  E-value=1.3e-09  Score=89.86  Aligned_cols=84  Identities=23%  Similarity=0.437  Sum_probs=68.3

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      .|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++++..+......              ...+.|.|.+++  |+|
T Consensus       106 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~--------------~~~~~L~i~~~~--d~G  169 (195)
T 2c5d_C          106 LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH--------------GPQRSLHVPGLN--KTS  169 (195)
T ss_dssp             SCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS--------------SCCEEEEECCCS--SCE
T ss_pred             CCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc--------------CCCCeEEEcccc--cCc
Confidence            4556666677889999999999999999999 99999998766432110              235689999887  899


Q ss_pred             EEEEEEEeCCceEE-EEEEEEE
Q psy12695        224 IYTCRAKNGAGEVF-TNISLNV  244 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~-~~~~l~v  244 (369)
                      .|.|.|.|..|... ..+.|.|
T Consensus       170 ~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          170 SFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEE
T ss_pred             eEEEEEEcCCCceEEEEEEEEE
Confidence            99999999999986 7888888

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.03  E-value=1.3e-09  Score=95.73  Aligned_cols=98  Identities=22%  Similarity=0.443  Sum_probs=70.8

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEE-eecceeeEEEcccCCCCCEEE
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK-TINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      .+...+....+.+|+.+.|.|.+.|.|.|.+.|++++...........     ..... .....+.|.|.+++.+|+|.|
T Consensus       183 ~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~L~I~~v~~~D~G~Y  257 (289)
T 3mjg_X          183 NVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVT-----DFLLDMPYHIRSILHIPSAELEDSGTY  257 (289)
T ss_dssp             CCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEE-----EESCTTTTEEEEEEEESSCCSSCCEEE
T ss_pred             CcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccc-----cccCCcceEEEEEEEEcccChhhCcEE
Confidence            333334557789999999999999999999999987643211000000     00000 011356899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEeecCC
Q psy12695        226 TCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      .|.|.|..|.....+.|.|...+.
T Consensus       258 ~C~a~N~~G~~~~~~~l~v~~~~~  281 (289)
T 3mjg_X          258 TCNVTESVNDHQDEKAINITVVES  281 (289)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEEC-
T ss_pred             EEEeecCCCCceeEEEEEEEEEec
Confidence            999999999999999999987664

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.03  E-value=5.6e-10  Score=102.98  Aligned_cols=90  Identities=30%  Similarity=0.517  Sum_probs=73.5

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+....         ++..   ...+.|.|.++..+|+|.|
T Consensus       313 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~---------~~~~---~~~~~L~i~~v~~~d~G~Y  380 (403)
T 3laf_A          313 PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSD---------YFQI---VGGSNLRILGVVKSDEGFY  380 (403)
T ss_dssp             EEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSS---------SEEE---ETTTEEEESSCCGGGCEEE
T ss_pred             CcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCC---------cEEE---ecCccEEEeccccccCEEE
Confidence            445556677888999999999999999999999999998764321         1111   1346799999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEeec
Q psy12695        226 TCRAKNGAGEVFTNISLNVIKV  247 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v~~~  247 (369)
                      .|.|.|..|.....+.|.|..+
T Consensus       381 ~C~a~N~~G~~~~~~~l~V~~P  402 (403)
T 3laf_A          381 QCVAENEAGNAQSSAQLIVPKP  402 (403)
T ss_dssp             EEEEEETTEEEEEEEEEECCCC
T ss_pred             EEEEEcCCceEEEEEEEEEeCC
Confidence            9999999999999999988764

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=99.03  E-value=1.3e-09  Score=80.98  Aligned_cols=84  Identities=14%  Similarity=0.215  Sum_probs=59.7

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      ..|..+.+.+|++++|.|.+.+.+.+.+.|+++.  .   .+.............++.+........|.|.+++.+|+|.
T Consensus         6 q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~   85 (107)
T 1i8k_A            6 QSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGD   85 (107)
T ss_dssp             EECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eCCCeEEecCCCCEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccCCEEEEEECCCCHHHCEE
Confidence            3466788999999999999998888899999853  1   1221111111111345655545556789999999999999


Q ss_pred             EEEEEEeCC
Q psy12695        225 YTCRAKNGA  233 (369)
Q Consensus       225 Y~C~a~n~~  233 (369)
                      |.|.+.+..
T Consensus        86 Y~C~~~~~~   94 (107)
T 1i8k_A           86 YYCLQSFNV   94 (107)
T ss_dssp             EEEEECSSS
T ss_pred             EEEEEeeCC
Confidence            999998753

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.02  E-value=1.2e-09  Score=89.53  Aligned_cols=82  Identities=43%  Similarity=0.655  Sum_probs=67.0

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ...+.+|+.+.|.|.+.|.|.|.+.|++++..+....         ++.  .....+.|.|.++..+|+|.|+|.|.|..
T Consensus       107 ~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~---------~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  175 (189)
T 2v5t_A          107 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE---------KYI--LKGSNTELTVRNIINSDGGPYVCRATNKA  175 (189)
T ss_dssp             EEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSS---------SEE--EETTTTEEEECSCCGGGCEEEEEEEEETT
T ss_pred             cccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCC---------cEE--EecCCCEEEEcCCChhhCeeEEEEEEeCC
Confidence            4567889999999999999999999999987664321         111  12335679999999999999999999999


Q ss_pred             ceEEEEEEEEEee
Q psy12695        234 GEVFTNISLNVIK  246 (369)
Q Consensus       234 g~~~~~~~l~v~~  246 (369)
                      |.....+.|.|..
T Consensus       176 g~~~~~~~l~V~v  188 (189)
T 2v5t_A          176 GEDEKQAFLQVFV  188 (189)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             CceeEEEEEEEEe
Confidence            9999888888763

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.02  E-value=1.1e-09  Score=100.90  Aligned_cols=91  Identities=19%  Similarity=0.406  Sum_probs=72.4

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+......      ....    ...+.|.|.+++.+|+|.|
T Consensus       313 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~------~~~~----~~~~~L~i~~v~~~d~G~Y  382 (404)
T 3p3y_A          313 PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPN------PNRE----VAGDTIIFRDTQISSRAVY  382 (404)
T ss_dssp             EEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCC------TTEE----EETTEEEESSCCSSCCCEE
T ss_pred             CeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCC------ceEE----ecCCEEEEeecCHHHCEEE
Confidence            44555667788999999999999999999999999999876532211      0111    1245899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEee
Q psy12695        226 TCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      +|.|.|..|.....+.|.|..
T Consensus       383 ~C~a~N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          383 QCNTSNEHGYLLANAFVSVLD  403 (404)
T ss_dssp             EEEEEETTEEEEEEEEEEEC-
T ss_pred             EEEEEeCCCcEEEEEEEEEEe
Confidence            999999999999999988754

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.01  E-value=1.6e-09  Score=90.37  Aligned_cols=83  Identities=20%  Similarity=0.346  Sum_probs=64.0

Q ss_pred             eeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695        155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG  234 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g  234 (369)
                      +.+.+|+.++|.|.+.|.|.|.+.|++......         .. ..  ......+.|.|.+++.+|+|.|.|.|.|..|
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~---------~~-~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~   78 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL---------NG-KV--TNEGTTSTLTMNPVSFGNEHSYLCTATCESR   78 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCC---------SS-EE--EEETTEEEEEESSCCGGGCSEEEEEEEETTE
T ss_pred             EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCc---------cc-eE--EEcCCccEEEECcCCHHHCEEEEEEEEECCc
Confidence            345599999999999999999999988432110         00 10  1122356799999999999999999999999


Q ss_pred             eEEEEEEEEEeecCC
Q psy12695        235 EVFTNISLNVIKVET  249 (369)
Q Consensus       235 ~~~~~~~l~v~~~~~  249 (369)
                      ..+..+.|.|...+.
T Consensus        79 ~~~~~~~l~V~~~p~   93 (202)
T 1vca_A           79 KLEKGIQVEIYSFPK   93 (202)
T ss_dssp             EEEEEEEEEEEBCCS
T ss_pred             eEeeEEEEEEEeCCC
Confidence            888889999987654

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.01  E-value=5.2e-10  Score=102.70  Aligned_cols=76  Identities=26%  Similarity=0.475  Sum_probs=66.5

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA  229 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  229 (369)
                      ..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..                   ..+.|.|.++..+|+|.|+|.|
T Consensus       312 ~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~-------------------~~~~L~i~~v~~~d~G~Y~C~a  372 (388)
T 2v5m_A          312 IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH-------------------SESVLRIESVKKEDKGMYQCFV  372 (388)
T ss_dssp             EESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSC-------------------CSSEEEESSCCGGGCEEEEEEE
T ss_pred             cCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECcc-------------------CCCEEEEecCChhhCEEEEEEE
Confidence            345677889999999999999999999999999876532                   2457999999999999999999


Q ss_pred             EeCCceEEEEEEEEE
Q psy12695        230 KNGAGEVFTNISLNV  244 (369)
Q Consensus       230 ~n~~g~~~~~~~l~v  244 (369)
                      .|..|.....+.|.|
T Consensus       373 ~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          373 RNDRESAEASAELKL  387 (388)
T ss_dssp             ECSSCEEEEEEEEEE
T ss_pred             EcCCCcEEEEEEEEe
Confidence            999999999888876

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.00  E-value=1.8e-09  Score=90.61  Aligned_cols=97  Identities=23%  Similarity=0.330  Sum_probs=71.1

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |.+...+....+.+|+.+.|.|.+ .|.|.|.+.|++++..+.......... ..++..   ...+.|.|.+++.+|+|.
T Consensus       109 ~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~-~~~~~~---~~~~~L~i~~~~~~d~G~  184 (217)
T 2vr9_A          109 DDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGA-SSRVRI---VDGGNLLISNVEPIDEGN  184 (217)
T ss_dssp             CSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---C-CCSEEE---ETTTEEEESSCCSTTCEE
T ss_pred             CCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCccccccccc-CCcEEe---cCCCcEEEeeCCHHHCeE
Confidence            445555677889999999999999 899999999999998776432211111 112211   134579999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEee
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      |+|.|.|..|.......+.+..
T Consensus       185 Y~C~a~N~~G~~~~~~~~lv~~  206 (217)
T 2vr9_A          185 YKCIAQNLVGTRESSYAKLIVQ  206 (217)
T ss_dssp             EEEEEEETTEEEECCCEEEEEC
T ss_pred             EEEEEEcccceeccccEEEEEE
Confidence            9999999999987775555543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.00  E-value=7.7e-10  Score=96.67  Aligned_cols=97  Identities=24%  Similarity=0.408  Sum_probs=82.7

Q ss_pred             ceEEEecCCCCCccCCC-C--CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQ-L--DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG  120 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~-~--~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  120 (369)
                      .+.++.++++++.+|.. +  ...++.|+|++|+|.   ...|.++++|++|+|++|+|+.+++..|..+++|+.|+|++
T Consensus        39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  118 (270)
T 2o6q_A           39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR  118 (270)
T ss_dssp             CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS
T ss_pred             CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC
Confidence            56899999999988863 3  257899999999854   66789999999999999999999999999999999999999


Q ss_pred             cceecccCCcccccCcCcccccc
Q psy12695        121 NPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       121 N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      |.|+.+++..|..+++|...++.
T Consensus       119 n~l~~~~~~~~~~l~~L~~L~Ls  141 (270)
T 2o6q_A          119 NQLKSLPPRVFDSLTKLTYLSLG  141 (270)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CccCeeCHHHhCcCcCCCEEECC
Confidence            99999998888888887665554

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.00  E-value=1.2e-09  Score=89.78  Aligned_cols=89  Identities=20%  Similarity=0.310  Sum_probs=67.0

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.....       .++..   ...+.|.|.+++.+|+|.|
T Consensus       101 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~-------~~~~~---~~~~~L~i~~~~~~d~G~Y  170 (191)
T 1epf_A          101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD-------VRFIV---LSNNYLQIRGIKKTDEGTY  170 (191)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCC-------TTEEE---CTTSCEEETTCCGGGCEEE
T ss_pred             ceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCC-------ceEEE---ecCCeEEECCCChhhCEEE
Confidence            4454556778889999999999999999999999999977643221       11211   1245799999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEE
Q psy12695        226 TCRAKNGAGEVFTNISLNV  244 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v  244 (369)
                      +|.|.|..|.......+.|
T Consensus       171 ~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          171 RCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             EEEEEEGGGTEEEEEEEEE
T ss_pred             EEEEEEecceeEEEEEEEE
Confidence            9999999876555444444

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=98.99  E-value=1.1e-09  Score=84.66  Aligned_cols=95  Identities=19%  Similarity=0.292  Sum_probs=65.5

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--eEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .+...|..+.+.+|++++|.|.+.+.  +.+.|+++.  .......     ....+|.+........|.|.+++.+|+|.
T Consensus        19 ~v~q~p~~~~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~-----~~~~r~~~~~~~~~~~L~I~~~~~~DsG~   91 (133)
T 3khq_A           19 QIWQHPRFAAKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELV-----SEEGRIVQTQNGSVYTLTIQNIQYEDNGI   91 (133)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECC-----CTTTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             ceEEcCceEEEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEE-----EeCCCEEEEcCCCEEEEEECCCChHHCEE
Confidence            44556778899999999999999887  889999873  2111100     12335555545556789999999999999


Q ss_pred             EEEEEEeCCce----EEEEEEEEEeecC
Q psy12695        225 YTCRAKNGAGE----VFTNISLNVIKVE  248 (369)
Q Consensus       225 Y~C~a~n~~g~----~~~~~~l~v~~~~  248 (369)
                      |+|.+.|..|.    ......|.|...+
T Consensus        92 Y~C~a~n~~g~~~~~~g~gt~L~V~~~p  119 (133)
T 3khq_A           92 YFCKQKCDSANHNVTDSCGTELLVLGFS  119 (133)
T ss_dssp             EEEEESSCC-------CCCEEEEEC---
T ss_pred             EEEEEEeCCCCcceeECCCEEEEEEecc
Confidence            99999998762    2344667776643

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.99  E-value=2.1e-09  Score=90.31  Aligned_cols=93  Identities=23%  Similarity=0.271  Sum_probs=65.0

Q ss_pred             CCeeeccCCeEEEEEEeeCCCC--CeEEEEeCCeEeeeccc-c-cccCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695        153 PDVTAEENENVTLSCRATGSPV--PKIKWIFKEKIIANISS-G-LANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      ..+.+.+|+.++|.|.+.|.|.  +.+.|++++..+..... . ........   ......+.|.|.+++.+|+|.|+|.
T Consensus       113 ~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~I~~v~~~D~G~Y~C~  189 (213)
T 2x1w_L          113 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS---EMKKFLSTLTIDGVTRSDQGLYTCA  189 (213)
T ss_dssp             SCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSC---SCEEEEEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCc---cceeeeEEEEECCCCcccCEEEEEE
Confidence            4458999999999999998654  47999998865321100 0 00000000   0011245799999999999999999


Q ss_pred             EEeCCceEEEEEEEEEeecC
Q psy12695        229 AKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       229 a~n~~g~~~~~~~l~v~~~~  248 (369)
                      |.|..|..+..+.|.|...+
T Consensus       190 a~N~~g~~~~~~~l~V~~~p  209 (213)
T 2x1w_L          190 ASSGLMTKKNSTFVRVHEDP  209 (213)
T ss_dssp             EECSSCEEEEEEEEEEEC--
T ss_pred             EecCCCcEEEEEEEEEeccc
Confidence            99999999999999998765

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=98.99  E-value=3.1e-09  Score=94.13  Aligned_cols=89  Identities=28%  Similarity=0.391  Sum_probs=72.3

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcc-cCCCCCEEEEEEEE
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVA-VTMSDSGIYTCRAK  230 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~-v~~~D~G~Y~C~a~  230 (369)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..+...         .++.+........|.|.+ +..+|+|.|+|.|.
T Consensus       111 ~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~---------~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~  181 (305)
T 2nzi_A          111 MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN---------GHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK  181 (305)
T ss_dssp             SCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSS---------SSCEEEECSSEEEEEETTCCCSTTCEEEEEEEE
T ss_pred             cccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCC---------CcEEEEEcCCceEEEEecCCccCccEEEEEEEE
Confidence            35677889999999999999999999999988665421         122333334567899999 99999999999999


Q ss_pred             eCCceEEEEEEEEEeecCC
Q psy12695        231 NGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       231 n~~g~~~~~~~l~v~~~~~  249 (369)
                      |..|.....+.|.|...+.
T Consensus       182 N~~G~~~~~~~l~v~~~P~  200 (305)
T 2nzi_A          182 NRFGIDQKTVELDVADVPD  200 (305)
T ss_dssp             ETTEEEEEEEEEEEEBCCC
T ss_pred             eCCCceeeEEEEEEecCCC
Confidence            9999999999999886653

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=98.98  E-value=3e-09  Score=79.74  Aligned_cols=98  Identities=21%  Similarity=0.325  Sum_probs=66.4

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCC-CeEEEEeCCe-----EeeecccccccCCcceEEEEe--ecceeeEEEcccCCCCC
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPV-PKIKWIFKEK-----IIANISSGLANMNKRQYIIKT--INSLSNLTIVAVTMSDS  222 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~-p~i~W~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~  222 (369)
                      .|..+.+.+|++++|.|.+.+... ..+.|+++..     .+.............++.+..  ......|.|.+++.+|+
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds   86 (113)
T 1zox_A            7 GPEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDA   86 (113)
T ss_dssp             CCSEEEEETTSCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CCCEEEEeCCCcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHHHC
Confidence            356788999999999999976543 3599999652     122111110011123444432  23456899999999999


Q ss_pred             EEEEEEEEeCCceEEEEEEEEEeecC
Q psy12695        223 GIYTCRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       223 G~Y~C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      |.|.|.+.+........+.|.|...|
T Consensus        87 G~Y~C~v~~~~~~~~~~v~L~V~~~p  112 (113)
T 1zox_A           87 GIYWCGITKGGLDPMFKVTVNIGPVP  112 (113)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEEECC-
T ss_pred             EEEEEeeEcCCCCccEEEEEEEEcCC
Confidence            99999998876666778888887543

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=98.98  E-value=1.9e-09  Score=80.57  Aligned_cols=87  Identities=14%  Similarity=0.196  Sum_probs=61.4

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCe-----EeeecccccccCCcceEEEEeecceeeEEEcccCCCC
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK-----IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD  221 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D  221 (369)
                      .+...|..+.+.+|++++|.|.+.+.+.+.+.|+++..     .+.............++..........|+|.+++.+|
T Consensus         6 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~D   85 (111)
T 1i3g_L            6 VLTQSHKFMSTSVGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSED   85 (111)
T ss_dssp             CEEESCSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEEeCCEEEEcCCCCEEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcCCCEEEEEECCCCHHH
Confidence            34455677899999999999999888778899998641     1221111111111345655545556789999999999


Q ss_pred             CEEEEEEEEeCC
Q psy12695        222 SGIYTCRAKNGA  233 (369)
Q Consensus       222 ~G~Y~C~a~n~~  233 (369)
                      +|.|.|.+.+..
T Consensus        86 sG~Y~C~~~~~~   97 (111)
T 1i3g_L           86 LADYFCQQYSSY   97 (111)
T ss_dssp             CSEEEEEECSSS
T ss_pred             CEEEEEEEecCC
Confidence            999999998753

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.97  E-value=1.1e-09  Score=92.63  Aligned_cols=88  Identities=25%  Similarity=0.382  Sum_probs=70.5

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ....+.+|+.+.|.|.+.|.|.+.+.|++++..+.......      .  .........|.|.+++.+|+|.|+|.+.|.
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~------~--~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   98 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG------G--YKVRNQHWSLIMESVVPSDKGNYTCVVENE   98 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTT------C--CEEEGGGTEEEECSCCGGGCEEEEEEEEET
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEECCcccccccccc------c--eeeecCcceEEEecCCcccCEEEEEEEecc
Confidence            67789999999999999999999999999998765322110      0  012234568999999999999999999999


Q ss_pred             CceEEEEEEEEEeecC
Q psy12695        233 AGEVFTNISLNVIKVE  248 (369)
Q Consensus       233 ~g~~~~~~~l~v~~~~  248 (369)
                      .|.....+.+.|...+
T Consensus        99 ~~~~~~~~~l~V~~~~  114 (231)
T 3ojm_B           99 YGSINHTYHLDVVERS  114 (231)
T ss_dssp             TEEEEEEEEEEEECCC
T ss_pred             cCcccccEEEEEEcCC
Confidence            9998888888887643

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=98.97  E-value=1.7e-09  Score=95.02  Aligned_cols=86  Identities=35%  Similarity=0.491  Sum_probs=68.2

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ...+.+|+.+.|.|.+.|.|.|.+.|++++..+......     ..++.  .......|.|.+++.+|+|.|+|.|.|..
T Consensus       205 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~-----~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  277 (291)
T 1qz1_A          205 NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEED-----DEKHI--FSDDSSELTIRNVDKNDEAEYVCIAENKA  277 (291)
T ss_dssp             EEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--C-----CSSEE--ECTTSCEEEECSCCGGGCEEEEEEEEETT
T ss_pred             ccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCC-----CcceE--EcCCCcEEEEEecChhcCEEEEEEEEeCC
Confidence            456789999999999999999999999999876532210     01111  22345689999999999999999999999


Q ss_pred             ceEEEEEEEEEee
Q psy12695        234 GEVFTNISLNVIK  246 (369)
Q Consensus       234 g~~~~~~~l~v~~  246 (369)
                      |.....+.|.|..
T Consensus       278 G~~~~~~~l~V~~  290 (291)
T 1qz1_A          278 GEQDASIHLKVFA  290 (291)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             CceEEEEEEEEEc
Confidence            9999999998864

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=98.97  E-value=2.9e-09  Score=81.53  Aligned_cols=100  Identities=21%  Similarity=0.298  Sum_probs=68.1

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCC----CCeEEEEeCC-----eEeeecccccccCCcceEEEEeecceeeEEEcccC
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSP----VPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT  218 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p----~p~i~W~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~  218 (369)
                      +...|..+.+.+|++++|.|.+.+.+    .+.+.|++..     ..+.............++..........|+|.+++
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~sL~I~~v~   83 (126)
T 4ffy_L            4 LTQSPASLAVSLGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDSVE   83 (126)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC
T ss_pred             EEeCCCeEEEeCCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecCCCEEEEEECCCC
Confidence            34456678999999999999998876    5679999853     12221111111112345655555567789999999


Q ss_pred             CCCCEEEEEEEEeCCceEE-EEEEEEEeec
Q psy12695        219 MSDSGIYTCRAKNGAGEVF-TNISLNVIKV  247 (369)
Q Consensus       219 ~~D~G~Y~C~a~n~~g~~~-~~~~l~v~~~  247 (369)
                      .+|+|.|.|.+.+...... ....|.|...
T Consensus        84 ~~DsG~Y~C~~~~~~~~~fg~gT~L~V~~~  113 (126)
T 4ffy_L           84 TDDAATYYCQQNNEDPYTFGGGTKLEIKGG  113 (126)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEEEC-
T ss_pred             HHHCEEEEEEEecCCCcEECCCEEEEEecC
Confidence            9999999999988654433 3366777654

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=98.96  E-value=2.7e-09  Score=93.63  Aligned_cols=97  Identities=19%  Similarity=0.283  Sum_probs=71.0

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeC-CCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATG-SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |.+...+....+.+|+.+.|.|.+.| .|.+.+.|++++..+........  ...     .....+.|.|.+++.+|+|.
T Consensus       187 p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~--~~~-----~~~~~~~L~i~~v~~~d~G~  259 (289)
T 3ejj_X          187 PQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDF--QDN-----YYKKVRALSLNAVDFQDAGI  259 (289)
T ss_dssp             CEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEE--CSS-----SEEEEEEEEESSCCSSSCEE
T ss_pred             CeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCccc--ccc-----eEEeeEEEEEEeecccCCEE
Confidence            44444456677789999999999988 78999999999876643211100  000     11125689999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      |+|.|.|..|...+.+.|.+...+.
T Consensus       260 Y~C~a~N~~G~~~~s~~L~~~~~~~  284 (289)
T 3ejj_X          260 YSCVASNDVGTRTATMNFQVVESHH  284 (289)
T ss_dssp             EEEEEECSSCEEEEEEEEECC----
T ss_pred             EEEEEEcCCCCccccEEEEEEeccc
Confidence            9999999999999999998876543

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=98.96  E-value=1.3e-09  Score=99.82  Aligned_cols=87  Identities=28%  Similarity=0.558  Sum_probs=72.0

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...         .++.+    ..+.|.|.++..+|+|.|
T Consensus       295 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~---------~~~~~----~~~~L~i~~v~~~d~G~Y  361 (382)
T 1cs6_A          295 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQ---------NRIEV----SGGELRFSKLVLEDSGMY  361 (382)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCC---------SSEEE----ETTEEEESSCCGGGCEEE
T ss_pred             CCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCC---------ceEEE----ECCEEEECcCCcccCEEE
Confidence            44555567788999999999999999999999999999876532         12222    235899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEe
Q psy12695        226 TCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v~  245 (369)
                      +|.|.|..|.....+.|.|.
T Consensus       362 ~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          362 QCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEeCCCeEEEEEEEEEe
Confidence            99999999999999998885

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.96  E-value=1.7e-09  Score=92.30  Aligned_cols=97  Identities=21%  Similarity=0.335  Sum_probs=67.3

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEe----CCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIF----KEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++    ++..+........ .....+........+.|.|.++..+|+|.|+|
T Consensus       121 ~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  199 (241)
T 3grw_A          121 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYV-TVLKSWISESVEADVRLRLANVSERDGGEYLC  199 (241)
T ss_dssp             TCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCE-EEEEEEECSBSEEEEEEEECSCCGGGCEEEEE
T ss_pred             CccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceee-eeeeEeeeeecCCceEEEECcCCcccCcEEEE
Confidence            567788999999999999999999999999    5544332111100 00000000111235689999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEeecCC
Q psy12695        228 RAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       228 ~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      .|.|..|.....+.|.|..++.
T Consensus       200 ~a~N~~g~~~~~~~l~V~~~p~  221 (241)
T 3grw_A          200 RATNFIGVAEKAFWLSVHGPRA  221 (241)
T ss_dssp             EEECSSCEEEEEEEEEC-----
T ss_pred             EEecCcceEEEEEEEEecCCCC
Confidence            9999999999999999987664

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=98.96  E-value=3.6e-09  Score=83.04  Aligned_cols=103  Identities=18%  Similarity=0.264  Sum_probs=67.7

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC-----eEeeecccccccCCcceEEEEeecceeeEEEcccCCC
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMS  220 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~  220 (369)
                      +.+...+..+.+.+|++++|.|.+.+.+.+.+.|+++.     ..+.............+|..........|+|.+++.+
T Consensus        17 ~~v~q~p~~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~v~~~   96 (146)
T 2yc1_B           17 IVLTQSPATLSVSPGERATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGSGTDFTLTISSLEPE   96 (146)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             ceEEEeCCEEEEecCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEecCCCEEEEEECCCCHH
Confidence            33445567788999999999999988877889999854     1222211111111234666555556678999999999


Q ss_pred             CCEEEEEEEEeCCceEE-EEEEEEEeecC
Q psy12695        221 DSGIYTCRAKNGAGEVF-TNISLNVIKVE  248 (369)
Q Consensus       221 D~G~Y~C~a~n~~g~~~-~~~~l~v~~~~  248 (369)
                      |+|.|.|.+.+...... ....|.|....
T Consensus        97 DsG~Y~C~~~~~~~~~fg~GT~L~V~~~~  125 (146)
T 2yc1_B           97 DFAIYYCQQYRYSPRTFGQGTKVEIKRAA  125 (146)
T ss_dssp             GCSEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             HCEEEEEEEecCCCCeECCCEEEEEeCCc
Confidence            99999999987643222 23456665443

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=98.96  E-value=6.4e-09  Score=91.32  Aligned_cols=101  Identities=16%  Similarity=0.305  Sum_probs=73.6

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCC-CCeEEEEe-CCeEeeecccccccCCcceEEE-EeecceeeEEEcccCCCCC
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSP-VPKIKWIF-KEKIIANISSGLANMNKRQYII-KTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p-~p~i~W~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~  222 (369)
                      +.+...|.+..+.+|+.+.|.|.+.|.| .+.+.|++ ++..+...        ..++.+ ......+.|.|.+++.+|+
T Consensus         3 ~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~--------~~~~~~~~~~~~~~~L~i~~~~~~D~   74 (291)
T 1qz1_A            3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPN--------QQRISVVWNDDDSSTLTIYNANIDDA   74 (291)
T ss_dssp             CCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSS--------CSSEEEEEEETTEEEEEECSCCGGGC
T ss_pred             cceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccC--------CceEEEEEcCCCeEEEEEecCCCCCC
Confidence            3455567888999999999999999987 68999999 55444311        112222 2234567899999999999


Q ss_pred             EEEEEEEEeCCce-EEEEEEEEEeecCCcccCC
Q psy12695        223 GIYTCRAKNGAGE-VFTNISLNVIKVETAVAQP  254 (369)
Q Consensus       223 G~Y~C~a~n~~g~-~~~~~~l~v~~~~~~~~~~  254 (369)
                      |.|.|.+.|..|. .+..+.|.|...+.....+
T Consensus        75 G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~  107 (291)
T 1qz1_A           75 GIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP  107 (291)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEEECCSEEEECC
T ss_pred             EEEEEEEEcCCCCeeEEEEEEEeeccccccCCC
Confidence            9999999999864 5677888887665443333

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.96  E-value=8.6e-10  Score=100.66  Aligned_cols=58  Identities=29%  Similarity=0.407  Sum_probs=47.5

Q ss_pred             CCcccCeeeccCCcccccCCcccccccccccccccccceecccCCcccccCcCccccc
Q psy12695         85 KLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDF  142 (369)
Q Consensus        85 ~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~  142 (369)
                      ++++|+.|+|++|+|+.+++.+|.++++|+.|+|++|.|+.++++.|.++++|...++
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  119 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL  119 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence            5677888888888888888888888888888888888888888888888877665444

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=98.95  E-value=1.7e-09  Score=82.79  Aligned_cols=96  Identities=19%  Similarity=0.263  Sum_probs=63.5

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCC---eEEEEeCCeEe--eecccc------cccCCcceEEEEe---ecceeeEEEc
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVP---KIKWIFKEKII--ANISSG------LANMNKRQYIIKT---INSLSNLTIV  215 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p---~i~W~~~~~~~--~~~~~~------~~~~~~~~~~~~~---~~~~~~L~I~  215 (369)
                      ..+..+.+..|++++|.|.+...+.+   .|.|++++...  ......      ....-..+..+..   ..+...|.|.
T Consensus        10 ~~~~~v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~   89 (125)
T 4gos_A           10 VTTVASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLK   89 (125)
T ss_dssp             EEEECEEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEES
T ss_pred             ccCceEEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEEC
Confidence            34456778899999999998654433   58999865321  000000      0000011222211   1234689999


Q ss_pred             ccCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy12695        216 AVTMSDSGIYTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      +++.+|+|.|.|.+.|..|..++.+.|.|=
T Consensus        90 ~v~~~D~G~Y~C~v~~~~g~~~~~v~LkVG  119 (125)
T 4gos_A           90 NVQLTDAGTYKCYIITSKGKGNANLEYKTG  119 (125)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCChHHCEEEEEEEEeCCCeEEEEEEEEEC
Confidence            999999999999999999999999988873

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.95  E-value=1.4e-09  Score=91.61  Aligned_cols=84  Identities=18%  Similarity=0.315  Sum_probs=68.4

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...                  ....|.|.+++.+|+|.|
T Consensus       119 p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~------------------~~~~L~i~~v~~~d~G~Y  180 (218)
T 3k0w_A          119 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE------------------TKKLYMVPYVDLEHQGTY  180 (218)
T ss_dssp             CEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTC------------------CSSEEEESSCCGGGCEEE
T ss_pred             ceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCC------------------CCCEEEEeecChhcCEEE
Confidence            44455567788999999999999999999999999998765421                  134799999999999999


Q ss_pred             EEEEEeCCce-EEEEEEEEEeec
Q psy12695        226 TCRAKNGAGE-VFTNISLNVIKV  247 (369)
Q Consensus       226 ~C~a~n~~g~-~~~~~~l~v~~~  247 (369)
                      +|.|.|..|. .+..+.|.|...
T Consensus       181 ~C~a~n~~g~~~s~~~~l~V~~~  203 (218)
T 3k0w_A          181 WCHVYNDRDSQDSKKVEIIIDEL  203 (218)
T ss_dssp             EEEEECSSCEEECCCEEEEECC-
T ss_pred             EEEEEcCCCCceeeeEEEEEeCC
Confidence            9999998887 556677777653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.95  E-value=1.4e-09  Score=95.17  Aligned_cols=96  Identities=28%  Similarity=0.344  Sum_probs=75.2

Q ss_pred             ceEEEecCCCCCccCCCC--CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN  121 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N  121 (369)
                      .+.++.+++.++.++. +  ...++.|+|++|.|.   +..|.++++|++|+|++|+|+.+++..|..+++|+.|+|++|
T Consensus        65 L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  143 (272)
T 3rfs_A           65 VRYLALGGNKLHDISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN  143 (272)
T ss_dssp             CCEEECTTSCCCCCGG-GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEECCCCCCCCchh-hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC
Confidence            5678888888887653 3  356888888888855   456888888888888888888888888888888888888888


Q ss_pred             ceecccCCcccccCcCcccccc
Q psy12695        122 PIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       122 ~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      .|+.+++..|..+++|...++.
T Consensus       144 ~l~~~~~~~~~~l~~L~~L~l~  165 (272)
T 3rfs_A          144 QLQSLPKGVFDKLTNLTELDLS  165 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECC
T ss_pred             ccCccCHHHhccCccCCEEECC
Confidence            8888888778777776655443

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=98.95  E-value=4.2e-09  Score=87.42  Aligned_cols=91  Identities=18%  Similarity=0.148  Sum_probs=66.7

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCC-----CeEEEEeCCeEeeecccccccCCcceEEEEe---ecceeeEEEcccCCCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPV-----PKIKWIFKEKIIANISSGLANMNKRQYIIKT---INSLSNLTIVAVTMSD  221 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~-----p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~v~~~D  221 (369)
                      ..+..+.+.+|+.+.|.|.+.+.|.     +.+.|++.+.......        .++.+..   ..+...|.|.+++.+|
T Consensus         7 ~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~--------~r~~~~~~~~~~~~~~L~I~~v~~~D   78 (202)
T 3bp6_B            7 APKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQS--------ERATLLEEQLPLGKALFHIPSVQVRD   78 (202)
T ss_dssp             CSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBC--------SSCEECGGGGGGTEEEEEECSCCGGG
T ss_pred             cCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccC--------CceEEeeccccCCeeEEEECCCCHHH
Confidence            3445688999999999999999886     8899999443322111        1111111   1145789999999999


Q ss_pred             CEEEEEEEEeCCceEEEEEEEEEeecC
Q psy12695        222 SGIYTCRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       222 ~G~Y~C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      +|.|.|.+.|..|.....+.|.|...+
T Consensus        79 ~G~Y~C~~~~~~~~~~~~~~l~V~~~~  105 (202)
T 3bp6_B           79 SGQYRCLVICGAAWDYKYLTVKVKASY  105 (202)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEEBCC
T ss_pred             CcEEEEEEEeCCCcceEEEEEEecCCC
Confidence            999999999999988888888888654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.94  E-value=1.8e-09  Score=94.45  Aligned_cols=97  Identities=27%  Similarity=0.372  Sum_probs=78.1

Q ss_pred             ceEEEecCCCCCccCCCC---CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQL---DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG  120 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~---~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  120 (369)
                      .+.++.++++++.+|...   ...++.|+|++|+|.   +..|.++++|+.|+|++|+|+.+++..|..+++|+.|+|++
T Consensus        87 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  166 (272)
T 3rfs_A           87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY  166 (272)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC
Confidence            567888888888877654   357888999998855   55688888899999999998888888888888899999999


Q ss_pred             cceecccCCcccccCcCcccccc
Q psy12695        121 NPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       121 N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      |.|+.+++..|..+++|...++.
T Consensus       167 n~l~~~~~~~~~~l~~L~~L~L~  189 (272)
T 3rfs_A          167 NQLQSLPEGVFDKLTQLKDLRLY  189 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcCccCHHHhcCCccCCEEECC
Confidence            98888888888877776655443

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=98.94  E-value=1.5e-09  Score=90.58  Aligned_cols=79  Identities=19%  Similarity=0.303  Sum_probs=61.0

Q ss_pred             CeeeccCCeEEEEEEeeCC-CCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        154 DVTAEENENVTLSCRATGS-PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ...+.+|+.+.|.|.+.+. |.+.+.|++++..+..                 ....+.|.|.+++.+|+|.|+|.|.|.
T Consensus        97 ~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~-----------------~~~~~~L~i~~v~~~D~G~Y~C~a~n~  159 (204)
T 3sgj_C           97 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY-----------------FHHNSDFYIPKATLKDSGSYFCRGLVG  159 (204)
T ss_dssp             CSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE-----------------EEECCCEEESSCCGGGCEEEEEEEEET
T ss_pred             ceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec-----------------ccCCceEEECcCCcccCEEEEEEEEeC
Confidence            3678899999999999665 5688999999976532                 112468999999999999999999994


Q ss_pred             -CceEEEEEEEEEeecCC
Q psy12695        233 -AGEVFTNISLNVIKVET  249 (369)
Q Consensus       233 -~g~~~~~~~l~v~~~~~  249 (369)
                       .+..+..+.|.|...+.
T Consensus       160 ~~~~~s~~~~l~V~~~~~  177 (204)
T 3sgj_C          160 SKNVSSETVQITITQGLA  177 (204)
T ss_dssp             TEEEECCCEEEEEEC---
T ss_pred             CCceecCcEEEEEeCcCC
Confidence             44566678888876553

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=98.93  E-value=2.2e-09  Score=90.15  Aligned_cols=98  Identities=27%  Similarity=0.426  Sum_probs=69.6

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .|.+...+..+.+.+|+.+.|.|.+.|.|.+.+.|++++..+......     ..++..........+.|.+++.+|+|.
T Consensus         9 ~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~-----~~~~~~~~~~~~~~l~i~~v~~~d~G~   83 (217)
T 2vr9_A            9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKK-----SHRVQFKDGALFFYRTMQGKKEQDGGE   83 (217)
T ss_dssp             CCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSS-----SSEEECTTSCEEESSCCBSSSCBCCEE
T ss_pred             CCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCcc-----ceeEEecCCceEEEEEeccCCcccCce
Confidence            466666778899999999999999999999999999998876542211     111111000111234788999999999


Q ss_pred             EEEEEEeCCceEE-EEEEEEEeec
Q psy12695        225 YTCRAKNGAGEVF-TNISLNVIKV  247 (369)
Q Consensus       225 Y~C~a~n~~g~~~-~~~~l~v~~~  247 (369)
                      |+|.+.|..|... ..+.+.|...
T Consensus        84 Y~C~~~n~~g~~~~~~~~l~v~~~  107 (217)
T 2vr9_A           84 YWCVAKNRVGQAVSRHASLQIAVL  107 (217)
T ss_dssp             EEEEEEETTEEEECCCEEEEECEE
T ss_pred             EEEEEecCCCccccccceEEEEEe
Confidence            9999999998763 3566666653

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.93  E-value=1.9e-09  Score=89.88  Aligned_cols=100  Identities=20%  Similarity=0.358  Sum_probs=69.1

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEE-eeCCCCCeEEEEeCCe-EeeecccccccCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCR-ATGSPVPKIKWIFKEK-IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~-~~g~p~p~i~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      .|.+...+....+.+|+.+.|.|. +.|.|.|.+.|++++. .+.............++.  .....+.|.|.+++.+|+
T Consensus       104 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~L~i~~~~~~d~  181 (212)
T 1f97_A          104 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT--IDPKSGDLIFDPVTAFDS  181 (212)
T ss_dssp             CCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEE--ECTTTCCEEESSCCGGGC
T ss_pred             CCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeE--ecCCCceEEEEecChhhC
Confidence            344443344567899999999999 7999999999999998 654322211111111221  223457899999999999


Q ss_pred             EEEEEEEEeCCceE--EEEEEEEEee
Q psy12695        223 GIYTCRAKNGAGEV--FTNISLNVIK  246 (369)
Q Consensus       223 G~Y~C~a~n~~g~~--~~~~~l~v~~  246 (369)
                      |.|+|.|.|..|..  +..+.|.|..
T Consensus       182 G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          182 GEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             EEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             cEEEEEEccccCCccccceEEEEEEE
Confidence            99999999999987  4456666654

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=98.93  E-value=4.3e-09  Score=85.72  Aligned_cols=82  Identities=27%  Similarity=0.435  Sum_probs=65.8

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      .|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++++..+....                .....|.|.++  +|+|
T Consensus        98 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~----------------~~~~~L~i~~~--~d~G  159 (182)
T 1rhf_A           98 VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA----------------PSPSVLNVTGV--TQST  159 (182)
T ss_dssp             SCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE----------------ESSEEEEECCC--SSCE
T ss_pred             CCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCC----------------CCceEEEEecc--ccCe
Confidence            4555556677889999999999999999999 999999987664211                03568999988  5899


Q ss_pred             EEEEEEEeCCceEEE-EEEEEE
Q psy12695        224 IYTCRAKNGAGEVFT-NISLNV  244 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~-~~~l~v  244 (369)
                      .|+|.|.|..|.... .+.|.|
T Consensus       160 ~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          160 MFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             EEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEEEECCCCCcccceEEEEe
Confidence            999999999998753 677665

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=98.93  E-value=2.8e-09  Score=86.53  Aligned_cols=77  Identities=21%  Similarity=0.379  Sum_probs=61.1

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ....+.+|+.+.|.|.+.+.+++ .+.|++++..+..                 ......|.|.+++.+|+|.|.|.|.|
T Consensus        96 ~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~-----------------~~~~~~L~i~~v~~~d~G~Y~C~a~n  158 (175)
T 1fnl_A           96 PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY-----------------FHHNSDFHIPKATLKDSGSYFCRGLV  158 (175)
T ss_dssp             SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE-----------------EEECCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC-----------------CCCCCEEEEcccChhhCeEEEEEEEc
Confidence            44668899999999999887665 8999999876632                 11256899999999999999999999


Q ss_pred             CCce-EEEEEEEEEee
Q psy12695        232 GAGE-VFTNISLNVIK  246 (369)
Q Consensus       232 ~~g~-~~~~~~l~v~~  246 (369)
                      ..|. .+..+.|.|..
T Consensus       159 ~~~~~~s~~~~l~V~~  174 (175)
T 1fnl_A          159 GSKNVSSETVNITITQ  174 (175)
T ss_dssp             TTEEEECCCEEEEEEC
T ss_pred             CCCCccCccEEEEEeC
Confidence            7664 45567777654

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=98.92  E-value=3.5e-09  Score=97.29  Aligned_cols=90  Identities=28%  Similarity=0.359  Sum_probs=69.9

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|+++++......        .+    .....+.|.|.+++.+|+|.|+|.|.|
T Consensus       212 ~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~--------~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~N  279 (384)
T 3kld_A          212 PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARK--------AR----RHKSNGILEIPNFQQEDAGSYECVAEN  279 (384)
T ss_dssp             CSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTT--------CE----ECTTSCEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCceEecCCCcEEEEEEEeecCCCcEEEEeCCCcccccc--------ce----ecCCCcEEEECCCChhhCEEEEEEEEc
Confidence            345667899999999999999999999999654322110        00    112356899999999999999999999


Q ss_pred             CCceEEEEEEEEEeecCCcccC
Q psy12695        232 GAGEVFTNISLNVIKVETAVAQ  253 (369)
Q Consensus       232 ~~g~~~~~~~l~v~~~~~~~~~  253 (369)
                      ..|.....+.|.|...|.....
T Consensus       280 ~~G~~~~~~~l~v~~~P~~~~~  301 (384)
T 3kld_A          280 SRGKNVAKGQLTFYAQPNWVQI  301 (384)
T ss_dssp             TTEEEEEEEEEEEEEEEEEEEC
T ss_pred             CCCeEEEEEEEEEecCCccccC
Confidence            9999999999998877654433

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=98.92  E-value=5.8e-09  Score=95.71  Aligned_cols=97  Identities=20%  Similarity=0.319  Sum_probs=74.3

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.....       .++.+........|.|.++..+|+|.
T Consensus       100 ~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~-------~~~~~~~~~~~~~L~i~~~~~~d~G~  172 (389)
T 2jll_A          100 APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNT-------TNLKTYSTGRKMILEIAPTSDNDFGR  172 (389)
T ss_dssp             EEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTC-------TTEEEEECSSCEEEEECCCSTTSSEE
T ss_pred             CCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccC-------ceEEEeccCCEEEEEECCCChhhCEE
Confidence            34454444445788999999999999999999999999977653221       12223333345689999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeecC
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      |.|.|.|..|.....+.+.+...+
T Consensus       173 Y~C~a~N~~G~~~~~~~l~v~~~P  196 (389)
T 2jll_A          173 YNCTATNHIGTRFQEYILALADVP  196 (389)
T ss_dssp             EEEEEEETTEEEEEEEEEEECCCC
T ss_pred             EEEEEEcCCCcEEEEEEEEecCCC
Confidence            999999999998888888775544

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.92  E-value=4.6e-09  Score=87.55  Aligned_cols=100  Identities=24%  Similarity=0.397  Sum_probs=71.8

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeeccc--ccc-cCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISS--GLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+.....  ... .....++...    .+.|.|.+++.+|+|.
T Consensus         4 v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~----~~~L~i~~v~~~D~G~   79 (212)
T 1f97_A            4 VYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS----SSGITFSSVTRKDNGE   79 (212)
T ss_dssp             EECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE----TTEEEESCCCGGGCEE
T ss_pred             EEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee----ceeEEEcccCcccCeE
Confidence            44556788899999999999999999999999997754321100  000 0011122221    2789999999999999


Q ss_pred             EEEEEEeCCc--eEEEEEEEEEeecCCcc
Q psy12695        225 YTCRAKNGAG--EVFTNISLNVIKVETAV  251 (369)
Q Consensus       225 Y~C~a~n~~g--~~~~~~~l~v~~~~~~~  251 (369)
                      |.|.+.|..|  .....+.|.|...+...
T Consensus        80 Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~  108 (212)
T 1f97_A           80 YTCMVSEEGGQNYGEVSIHLTVLVPPSKP  108 (212)
T ss_dssp             EEEEEEETTSSSEEEEEEEEEEEBCCCCC
T ss_pred             EEEEEEccCCCcccEEEEEEEEEcCCCCc
Confidence            9999999877  56777888888766543

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.92  E-value=2.8e-09  Score=89.80  Aligned_cols=87  Identities=29%  Similarity=0.391  Sum_probs=71.0

Q ss_pred             CCCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        144 CSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       144 c~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      ..+.+...+..+.+.+|+.+.|.|.+.|.|.+.+.|++++..+...                  ..+.|.|.+++.+|+|
T Consensus        17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~------------------~~~~L~i~~v~~~d~G   78 (218)
T 3k0w_A           17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG------------------NTSELIFNAVHVKDAG   78 (218)
T ss_dssp             --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC------------------CSSEEEETTCCGGGCE
T ss_pred             CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC------------------CCCEEEEccCChhhCe
Confidence            3466777888999999999999999999999999999998765321                  2457999999999999


Q ss_pred             EEEEEEEeCCceE-EEEEEEEEeecC
Q psy12695        224 IYTCRAKNGAGEV-FTNISLNVIKVE  248 (369)
Q Consensus       224 ~Y~C~a~n~~g~~-~~~~~l~v~~~~  248 (369)
                      .|.|.+.|..|.. +..+.|.|...+
T Consensus        79 ~Y~C~~~n~~~~~~s~~~~l~V~~~~  104 (218)
T 3k0w_A           79 FYVCRVNNNFTFEFSQWSQLDVCDIP  104 (218)
T ss_dssp             EEEEEEECTTCCEECCCEEEEEECCC
T ss_pred             EeEEEEEcCCCCceeeEEEEEEEccC
Confidence            9999999998764 555777776653

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=98.92  E-value=7.4e-09  Score=77.87  Aligned_cols=97  Identities=19%  Similarity=0.246  Sum_probs=63.3

Q ss_pred             CCCeeeccCCeEEEEEEe-eCCCCCe----EEEEeCCeEe--ee--cccccccCCcceEEEEee---c--ceeeEEEccc
Q psy12695        152 TPDVTAEENENVTLSCRA-TGSPVPK----IKWIFKEKII--AN--ISSGLANMNKRQYIIKTI---N--SLSNLTIVAV  217 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~-~g~p~p~----i~W~~~~~~~--~~--~~~~~~~~~~~~~~~~~~---~--~~~~L~I~~v  217 (369)
                      +..+.+.+|++++|.|.+ .+.+.+.    +.|++++...  ..  ...........+......   .  ....|.|.++
T Consensus         7 p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v   86 (118)
T 3udw_C            7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGL   86 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSC
T ss_pred             CCeEEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeec
Confidence            445889999999999999 4555444    9999974221  00  000000001222222111   0  1568999999


Q ss_pred             CCCCCEEEEEEEEe-CCceEEEEEEEEEeecC
Q psy12695        218 TMSDSGIYTCRAKN-GAGEVFTNISLNVIKVE  248 (369)
Q Consensus       218 ~~~D~G~Y~C~a~n-~~g~~~~~~~l~v~~~~  248 (369)
                      +.+|+|.|.|.+.+ ..|.....+.|.|..+|
T Consensus        87 ~~~D~G~Y~C~v~~~~~~~~~~~~~L~V~~~P  118 (118)
T 3udw_C           87 RVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP  118 (118)
T ss_dssp             CGGGCEEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred             ChHHCeEEEEEEEECCCCCccceEEEEEEeCC
Confidence            99999999999998 78888888889887653

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=98.92  E-value=7.6e-09  Score=90.86  Aligned_cols=103  Identities=22%  Similarity=0.384  Sum_probs=76.2

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEe-CCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIF-KEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      .|.+...+.++.+.+|+.+.|.|.+.|.|. .+.|++ ++..+..         ..++..........|.|.+++.+|+|
T Consensus         4 ~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~---------~~~~~~~~~~~~~~L~i~~~~~~D~G   73 (291)
T 2wim_A            4 LLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIIS---------TQRVVVQKEGVRSRLTIYNANIEDAG   73 (291)
T ss_dssp             CCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCC---------BTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccC---------CCcEEEecCCCEEEEEEccCCcccCE
Confidence            466666778899999999999999999875 899999 4443321         12333333444568999999999999


Q ss_pred             EEEEEEEeCCceE-EEEEEEEEeecCCcccCCCCc
Q psy12695        224 IYTCRAKNGAGEV-FTNISLNVIKVETAVAQPDPV  257 (369)
Q Consensus       224 ~Y~C~a~n~~g~~-~~~~~l~v~~~~~~~~~~~~~  257 (369)
                      .|.|.+.|..|.. ...+.|.|...+.....+...
T Consensus        74 ~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~  108 (291)
T 2wim_A           74 IYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQ  108 (291)
T ss_dssp             EEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCSE
T ss_pred             EEEEEEecccCceEEEEEEEEecCCcceEeCCCCh
Confidence            9999999998876 566788887766544444333

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.92  E-value=1.8e-09  Score=87.63  Aligned_cols=79  Identities=22%  Similarity=0.281  Sum_probs=62.4

Q ss_pred             CCeeeccCCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        153 PDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...                 ...+.|.|.+++.+|+|.|+|.|.|
T Consensus        93 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~-----------------~~~~~L~i~~v~~~d~G~Y~C~a~n  155 (176)
T 1f2q_A           93 SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW-----------------YENHNISITNATVEDSGTYYCTGKV  155 (176)
T ss_dssp             SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC-----------------CCSSEEEESSCCGGGCEEEEEEEEE
T ss_pred             CcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee-----------------cCCCeEEECCCCcccCEEEEEEEEe
Confidence            34577899999999999 56777799999998765311                 1246899999999999999999999


Q ss_pred             CCce-EEEEEEEEEeecC
Q psy12695        232 GAGE-VFTNISLNVIKVE  248 (369)
Q Consensus       232 ~~g~-~~~~~~l~v~~~~  248 (369)
                      ..+. .+..+.|.|...+
T Consensus       156 ~~~~~~s~~~~l~V~~~p  173 (176)
T 1f2q_A          156 WQLDYESEPLNITVIKAP  173 (176)
T ss_dssp             TTEEEECCCEEEEEECSC
T ss_pred             CCcceEecCEEEEEecCC
Confidence            7544 4556888887765

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.92  E-value=4.2e-09  Score=88.15  Aligned_cols=98  Identities=16%  Similarity=0.251  Sum_probs=67.5

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC---e--EeeecccccccCCcceEEEEeecceeeEEEcccCCCC
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE---K--IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD  221 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D  221 (369)
                      .+...+..+.+.+|+.++|.|.+.+.|.+.+.|++..   .  .+.............++..........|.|.+++.+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (213)
T 3r06_A            3 QMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESED   82 (213)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCccc
Confidence            3444567789999999999999999999999999843   1  1111111111112335555445567799999999999


Q ss_pred             CEEEEEEEEeCCce-EEEEEEEEE
Q psy12695        222 SGIYTCRAKNGAGE-VFTNISLNV  244 (369)
Q Consensus       222 ~G~Y~C~a~n~~g~-~~~~~~l~v  244 (369)
                      +|.|.|.+.|..+. ......|.|
T Consensus        83 ~G~Y~C~~~~~~~~~~~~~~~l~V  106 (213)
T 3r06_A           83 IGSYYCQQYYNYPWTFGPGTKLEI  106 (213)
T ss_dssp             CSEEEEEECSSSSCEECCCEEEEE
T ss_pred             CEEEEEecccCCceEEcCCceEEE
Confidence            99999999987653 333456666

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=98.92  E-value=7.7e-09  Score=78.05  Aligned_cols=96  Identities=22%  Similarity=0.376  Sum_probs=66.6

Q ss_pred             CCCCeeeccCCeEEEEEEeeC--CCCCeEEEEeCCeEeeeccccc---c-cCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        151 ITPDVTAEENENVTLSCRATG--SPVPKIKWIFKEKIIANISSGL---A-NMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g--~p~p~i~W~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .+..+.+.+|++++|.|.+.+  .+.+.+.|++++..+.......   . ..-..|+.+   .....|.|.+++.+|+|.
T Consensus         9 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~---~~~~sL~I~~v~~~D~G~   85 (117)
T 3q0h_A            9 TTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP---GPGLGLTLQSLTVNDTGE   85 (117)
T ss_dssp             ESCCEEEETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEE---CSTTCEEECSCCGGGCEE
T ss_pred             ccCCEEEecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEe---CCceEEEEeeCChhhCEE
Confidence            356788999999999999987  3344699999875443221100   0 000123332   235689999999999999


Q ss_pred             EEEEEE-eCCceEEEEEEEEEeecCC
Q psy12695        225 YTCRAK-NGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       225 Y~C~a~-n~~g~~~~~~~l~v~~~~~  249 (369)
                      |+|.+. +..|.....+.|.|..++.
T Consensus        86 Y~C~v~~~~~g~~~~~~~L~V~~pp~  111 (117)
T 3q0h_A           86 YFCIYHTYPDGTYTGRIFLEVLESSV  111 (117)
T ss_dssp             EEEEEEEETTCCEEEEEEEEEECC--
T ss_pred             EEEEEEECCCCCeEEEEEEEEEccCc
Confidence            999974 5678888899999988764

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.91  E-value=4.5e-09  Score=89.68  Aligned_cols=88  Identities=25%  Similarity=0.398  Sum_probs=70.5

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      +..+.+.+|+.+.|.|.+.|.|.+.+.|++++..+.......    .    .........|.|.+++.+|+|.|+|.+.|
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~----~----~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   93 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG----G----IKLRHQQWSLVMESVVPSDRGNYTCVVEN   93 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTT----C----CEEEGGGTEEEECSCCGGGCEEEEEEEEE
T ss_pred             CcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCccc----c----eeeeccceEEEEEeCCcccCEEEEEEEee
Confidence            456789999999999999999999999999998765322110    0    01223456899999999999999999999


Q ss_pred             CCceEEEEEEEEEeec
Q psy12695        232 GAGEVFTNISLNVIKV  247 (369)
Q Consensus       232 ~~g~~~~~~~l~v~~~  247 (369)
                      ..|.....+.+.|...
T Consensus        94 ~~~~~~~~~~l~V~~~  109 (241)
T 3grw_A           94 KFGSIRQTYTLDVLER  109 (241)
T ss_dssp             TTEEEEEEEEEEEECC
T ss_pred             cCCceEEEEEEEEecc
Confidence            9999888888888764

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=98.91  E-value=6e-09  Score=78.22  Aligned_cols=84  Identities=14%  Similarity=0.255  Sum_probs=58.8

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCC------CeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPV------PKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVT  218 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~------p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~  218 (369)
                      ..|..+.+.+|++++|.|.+.+.+.      +.+.|+++.  .   .+.............++..........|.|.+++
T Consensus         6 q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   85 (114)
T 1eeq_A            6 QSPDSLAVSLGERATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQ   85 (114)
T ss_dssp             EECSEEEECTTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             ecCCeEEEcCCCeEEEEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEeecCCEEEEEECCCC
Confidence            3467789999999999999988763      679999853  1   1221111111111345655545556789999999


Q ss_pred             CCCCEEEEEEEEeCC
Q psy12695        219 MSDSGIYTCRAKNGA  233 (369)
Q Consensus       219 ~~D~G~Y~C~a~n~~  233 (369)
                      .+|+|.|.|.+.+..
T Consensus        86 ~~DsG~Y~C~~~~~~  100 (114)
T 1eeq_A           86 AEDVAVYYCQQYYSH  100 (114)
T ss_dssp             GGGCEEEEEEECSSS
T ss_pred             cccCEEEEEEEeeCC
Confidence            999999999998753

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=98.91  E-value=3.3e-09  Score=94.02  Aligned_cols=88  Identities=23%  Similarity=0.355  Sum_probs=64.2

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEE
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYT  226 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  226 (369)
                      .+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.....             ...+...|.|.++  +|+|.|+
T Consensus       207 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~-------------~~~~~~~L~i~~~--~d~G~Y~  271 (304)
T 2yd9_A          207 RFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDD-------------MPVGRNVLELTDV--KDSANYT  271 (304)
T ss_dssp             EEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSS-------------CCBSEEEEEECSC--CSCEEEE
T ss_pred             cEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCccc-------------ccCCcEEEEEccc--ccCEEEE
Confidence            334445667789999999999999999999999999977643211             0112345777665  6999999


Q ss_pred             EEEEeCCceEEEEEEEEEeecCC
Q psy12695        227 CRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       227 C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      |.|.|..|.....+.|.|...+.
T Consensus       272 C~a~N~~G~~~~~~~l~V~~~~~  294 (304)
T 2yd9_A          272 CVAMSSLGVIEAVAQITVKSLPK  294 (304)
T ss_dssp             EEEEETTEEEEEEEEEC------
T ss_pred             EEEEeCCCcEEEEEEEEEecCcc
Confidence            99999999999999999887654

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=98.90  E-value=3.3e-09  Score=81.56  Aligned_cols=99  Identities=16%  Similarity=0.227  Sum_probs=66.2

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCC-CCeEEEEeCC--e---Eeeeccccc-ccCCcceEEEEe--ecceeeEEEcccCCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSP-VPKIKWIFKE--K---IIANISSGL-ANMNKRQYIIKT--INSLSNLTIVAVTMS  220 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p-~p~i~W~~~~--~---~~~~~~~~~-~~~~~~~~~~~~--~~~~~~L~I~~v~~~  220 (369)
                      ..|..+.+.+|++++|.|.+.+.. ...+.|+++.  +   .+....... ......+|.+..  ......|.|.+++.+
T Consensus         6 Q~P~~~~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~   85 (129)
T 3rrq_A            6 FSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRN   85 (129)
T ss_dssp             EECSEEEEETTSCEEEEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSCCGG
T ss_pred             ECCCEEEEeCCCCEEEEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCCChh
Confidence            446778999999999999998765 4579999742  1   121111110 011123555542  334678999999999


Q ss_pred             CCEEEEEEEEeCCceE----EEEEEEEEeecC
Q psy12695        221 DSGIYTCRAKNGAGEV----FTNISLNVIKVE  248 (369)
Q Consensus       221 D~G~Y~C~a~n~~g~~----~~~~~l~v~~~~  248 (369)
                      |+|.|.|.+.+..+..    ...+.|.|...+
T Consensus        86 Dsg~Y~C~~~~~~~~~~~~~s~~~~L~V~~~~  117 (129)
T 3rrq_A           86 DSGTYLCGAISLAPKLQIKESLRAELRVTERR  117 (129)
T ss_dssp             GCEEEEEEEEECGGGCEEEECCCEEEEEECCC
T ss_pred             HCEEEEEEEEecCCCceeeEeceEEEEEecCc
Confidence            9999999999977654    445788887654

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.90  E-value=2.9e-09  Score=97.85  Aligned_cols=85  Identities=27%  Similarity=0.554  Sum_probs=69.1

Q ss_pred             CCccCCCCC-eeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        146 PNIRPITPD-VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       146 p~i~~~~~~-~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |.+...+.. ..+.+|+.+.|.|.+.|.|.|.+.|++++..+...          ++..    ..+.|.|.++..+|+|.
T Consensus       309 P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~----------~~~~----~~~~L~i~~~~~~d~G~  374 (395)
T 1bih_A          309 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG----------RATV----TDSGLVIKGVKNGDKGY  374 (395)
T ss_dssp             EEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS----------SEEE----ETTEEEESSCCSTTCEE
T ss_pred             CccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC----------ceEE----ECCEEEEeeCCcccCEE
Confidence            344444555 77899999999999999999999999999776421          2222    13489999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEE
Q psy12695        225 YTCRAKNGAGEVFTNISLNV  244 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v  244 (369)
                      |+|.|.|..|.....+.|.|
T Consensus       375 Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          375 YGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             EEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEccCCCceEEEEEEE
Confidence            99999999999999888877

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.90  E-value=5.4e-09  Score=85.47  Aligned_cols=93  Identities=25%  Similarity=0.527  Sum_probs=65.9

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+......       ++..   ...+.|.|.+++.+|+|.|
T Consensus         3 ~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-------~~~~---~~~~~L~i~~~~~~d~G~Y   72 (189)
T 2v5t_A            3 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN-------RFAM---LANNNLQILNINKSDEGIY   72 (189)
T ss_dssp             CEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCT-------TEEE---CTTSCEEETTCCGGGCEEE
T ss_pred             ceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCC-------eEEE---ecCCCEEEeeCCHhHCcEE
Confidence            45556678889999999999999999999999999998766432211       2211   1245799999999999999


Q ss_pred             EEEEEeCCceE--EEEEEEEEeecC
Q psy12695        226 TCRAKNGAGEV--FTNISLNVIKVE  248 (369)
Q Consensus       226 ~C~a~n~~g~~--~~~~~l~v~~~~  248 (369)
                      .|.+.|..+..  ...+.+.+..++
T Consensus        73 ~C~~~~~~~~~~~~~~~~l~v~~~p   97 (189)
T 2v5t_A           73 RCEGRVEARGEIDFRDIIVIVNVPP   97 (189)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEEEEE
T ss_pred             EEEEEEcCCCceEEEEEEEEecCCC
Confidence            99999987543  345566665554

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.90  E-value=4.1e-09  Score=89.13  Aligned_cols=92  Identities=20%  Similarity=0.346  Sum_probs=69.2

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEe----CCeEeeecccccccCCcceEEEE----eecceeeEEEcccCCCCCE
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIF----KEKIIANISSGLANMNKRQYIIK----TINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G  223 (369)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++    ++..+.......      .....    .....+.|.|.++..+|+|
T Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~L~i~~~~~~d~G  198 (231)
T 3ojm_B          125 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPY------LKVLKHSGINSSNAEVLALFNVTEADAG  198 (231)
T ss_dssp             SCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBC------EEEEEECSTTCSCTTEEEECSCCGGGCE
T ss_pred             CCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcce------EeEecccccccCCccEEEEecCCHHHCe
Confidence            567888999999999999999999999999    554432211100      00000    0122357999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        224 IYTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      .|+|.|.|..|.....+.|.|...+.
T Consensus       199 ~Y~C~a~n~~g~~~~~~~l~V~~~p~  224 (231)
T 3ojm_B          199 EYICKVSNYIGQANQSAWLTVLPKQQ  224 (231)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECCC-
T ss_pred             EEEEEEEeccceEeeEEEEEEecCCC
Confidence            99999999999999999999987664

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=98.90  E-value=4.3e-09  Score=78.63  Aligned_cols=83  Identities=20%  Similarity=0.282  Sum_probs=58.3

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCC----CCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSP----VPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMS  220 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p----~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~  220 (369)
                      ..|..+.+.+|++++|.|.+.+.+    .+.+.|+++.  .   .+.............++.+........|.|.+++.+
T Consensus         6 q~p~~~~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   85 (111)
T 1j05_L            6 QSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEAD   85 (111)
T ss_dssp             EECSEEECCTTSCEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             EeCCEEEEeCCCCEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEccCCEEEEEECCCCcc
Confidence            346678899999999999998876    4679999853  2   122111111111134565554555678999999999


Q ss_pred             CCEEEEEEEEeC
Q psy12695        221 DSGIYTCRAKNG  232 (369)
Q Consensus       221 D~G~Y~C~a~n~  232 (369)
                      |+|.|.|.+.+.
T Consensus        86 DsG~Y~C~~~~~   97 (111)
T 1j05_L           86 DVATYYCQQTNE   97 (111)
T ss_dssp             GCEEEEEEECSS
T ss_pred             cCEEEEEEEecC
Confidence            999999999875

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=98.90  E-value=5.6e-09  Score=87.38  Aligned_cols=80  Identities=21%  Similarity=0.283  Sum_probs=60.0

Q ss_pred             CCCeeeccCCeEEEEEEee-CCCCCeEEEEeCCeEeeecccccccCCcceEEEEeec--ceeeEEEcccCCCCCEEEEEE
Q psy12695        152 TPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN--SLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      +.++.+.+|+.+.|.|.+. +.|.|.|.|++++..+....         ++.+....  +...|.|.+++.+|+|.|+|.
T Consensus         9 ~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~---------~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~   79 (207)
T 3rbs_A            9 ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGP---------KYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQ   79 (207)
T ss_dssp             EEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSS---------SCEEEECTTTCEEEEEESCCCGGGCEEEEEE
T ss_pred             CCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCC---------CEEEEEeCCCCEEEEEECCCChhhCEEEEEE
Confidence            4568899999999999996 47999999999998875322         12222222  345799999999999999999


Q ss_pred             EEeCCceEEEEEEE
Q psy12695        229 AKNGAGEVFTNISL  242 (369)
Q Consensus       229 a~n~~g~~~~~~~l  242 (369)
                      |.|  |.......+
T Consensus        80 a~N--g~a~~~~~~   91 (207)
T 3rbs_A           80 LQD--GKATNHSTV   91 (207)
T ss_dssp             EEE--TTEEEEEEE
T ss_pred             EEC--CCeEEEEEE
Confidence            999  444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.90  E-value=1.8e-09  Score=87.13  Aligned_cols=93  Identities=24%  Similarity=0.211  Sum_probs=52.4

Q ss_pred             ceEEEecCCCCC--ccCCCC--CCCccEEEeecceeCh-hhccCCcccCeeeccCCcccccCCccccccccccccccccc
Q psy12695         47 KETVLCKAKNFT--TIPEQL--DVGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN  121 (369)
Q Consensus        47 ~~~~~c~~~~l~--~ip~~~--~~~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N  121 (369)
                      .+.++.++++++  .+|..+  ...++.|+|++|.|.. ..|.++++|+.|+|++|+|+...+..|..+++|+.|+|++|
T Consensus        26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  105 (168)
T 2ell_A           26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN  105 (168)
T ss_dssp             CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS
T ss_pred             CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC
Confidence            345666666665  565543  2356666666666442 35556666666666666666644445555666666666666


Q ss_pred             ceecccC-CcccccCcCcc
Q psy12695        122 PIQKITH-EAFINVPKLNL  139 (369)
Q Consensus       122 ~l~~~~~-~~f~~l~~l~~  139 (369)
                      .|+.++. ..|..+++|..
T Consensus       106 ~l~~~~~~~~l~~l~~L~~  124 (168)
T 2ell_A          106 KLKDISTLEPLKKLECLKS  124 (168)
T ss_dssp             SCCSSGGGGGGSSCSCCCE
T ss_pred             ccCcchhHHHHhcCCCCCE
Confidence            6666543 44555555443

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.89  E-value=2.7e-09  Score=95.91  Aligned_cols=98  Identities=24%  Similarity=0.338  Sum_probs=69.2

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEe----CCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIF----KEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++    ++..+.......................+.|.|.+++.+|+|.|+|
T Consensus       229 ~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  308 (334)
T 1ry7_B          229 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTC  308 (334)
T ss_dssp             SCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEE
T ss_pred             CCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEE
Confidence            467889999999999999999999999999    4443322111000000000000001123479999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEeecCC
Q psy12695        228 RAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       228 ~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      .|.|..|.....+.|.|...+.
T Consensus       309 ~a~N~~G~~~~~~~l~V~~~~~  330 (334)
T 1ry7_B          309 LAGNSIGFSHHSAWLVVLPAEE  330 (334)
T ss_dssp             EEEESSCCEEEEEEEEEECSCC
T ss_pred             EEeCCCCeEEEEEEEEEEECCC
Confidence            9999999999999999987654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.89  E-value=1.4e-09  Score=87.69  Aligned_cols=96  Identities=23%  Similarity=0.238  Sum_probs=80.3

Q ss_pred             ceEEEecCCCCCccCCCC--CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCC-cccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPS-HILDSILELRELKLSG  120 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~~  120 (369)
                      .+.++.+++.++.+ ..+  ...++.|+|++|+|.   +..|.++++|+.|+|++|+|+.++. ..|..+++|+.|+|++
T Consensus        51 L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~  129 (168)
T 2ell_A           51 LEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN  129 (168)
T ss_dssp             CCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCS
T ss_pred             CCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeC
Confidence            57899999999988 444  357999999999976   4567789999999999999999865 6789999999999999


Q ss_pred             cceecccC---CcccccCcCcccccc
Q psy12695        121 NPIQKITH---EAFINVPKLNLEDFA  143 (369)
Q Consensus       121 N~l~~~~~---~~f~~l~~l~~~~~~  143 (369)
                      |+++.++.   ..|..+++|...++.
T Consensus       130 N~l~~~~~~~~~~~~~l~~L~~L~l~  155 (168)
T 2ell_A          130 CEVTNLNDYRESVFKLLPQLTYLDGY  155 (168)
T ss_dssp             SGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred             CcCcchHHHHHHHHHhCccCcEecCC
Confidence            99999887   578888887765554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.89  E-value=1.8e-09  Score=104.14  Aligned_cols=94  Identities=26%  Similarity=0.293  Sum_probs=80.9

Q ss_pred             ceEEEecCCCCCccCCCCC--CCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCcccccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQLD--VGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP  122 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~~--~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~  122 (369)
                      .+.+++++|+|+.+|. +.  ..++.|+|++|+|.  +..|.++++|+.|+|++|+|+.||  .|..+++|+.|+|++|.
T Consensus       443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSC
T ss_pred             ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCC
Confidence            4579999999999987 53  47999999999987  568999999999999999999987  68999999999999999


Q ss_pred             eeccc-CCcccccCcCcccccc
Q psy12695        123 IQKIT-HEAFINVPKLNLEDFA  143 (369)
Q Consensus       123 l~~~~-~~~f~~l~~l~~~~~~  143 (369)
                      |+.+. +..|..+++|...++.
T Consensus       520 l~~~~~p~~l~~l~~L~~L~L~  541 (567)
T 1dce_A          520 LQQSAAIQPLVSCPRLVLLNLQ  541 (567)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECT
T ss_pred             CCCCCCcHHHhcCCCCCEEEec
Confidence            99997 7788888887665544

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=98.89  E-value=3.4e-09  Score=87.67  Aligned_cols=89  Identities=15%  Similarity=0.127  Sum_probs=64.8

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...|.. .+.+|+.++|.|.+.+ +.+.+.|++++..+......          .......+.|.|.+++.+|+|.|
T Consensus         6 P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~----------~~~~~~~~~L~i~~v~~~D~G~Y   73 (196)
T 3p2t_A            6 PTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQN----------PLEPKNKARFSIPSMTEDYAGRY   73 (196)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEEC----------CCSSSSEEEEEESSCCGGGCEEE
T ss_pred             CEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccc----------cccCCceEEEEeccCCcccCceE
Confidence            444444555 7899999999999988 67899999988654321100          00112357899999999999999


Q ss_pred             EEEEEeCCce--EEEEEEEEEee
Q psy12695        226 TCRAKNGAGE--VFTNISLNVIK  246 (369)
Q Consensus       226 ~C~a~n~~g~--~~~~~~l~v~~  246 (369)
                      .|.|.|..|.  .+..+.|.|..
T Consensus        74 ~C~a~n~~g~~~~s~~~~l~V~~   96 (196)
T 3p2t_A           74 RCYYRSPVGWSQPSDPLELVMTG   96 (196)
T ss_dssp             EEEEEETTEEBCCCCCEEEEEEC
T ss_pred             EEEEeCCCcccCCCccEEEEecC
Confidence            9999999883  35556777754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.89  E-value=1.9e-09  Score=92.28  Aligned_cols=91  Identities=13%  Similarity=0.233  Sum_probs=80.1

Q ss_pred             CceEEEecCCCCCccCCCC---CCCccEEEeecce----eChhhccCCcccCeeeccC-CcccccCCccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQL---DVGTQVLDLSDNF----LDRYTFRKLINLVELDLSY-NQIQFVPSHILDSILELRELK  117 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~~---~~~~~~L~l~~n~----i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~  117 (369)
                      ..+.++.++++++.+|...   ...++.|+|++|+    |.+.+|.++++|++|+|++ |+|+.+++.+|.++++|+.|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            3678999999999998743   3579999999996    4577999999999999999 999999999999999999999


Q ss_pred             ccccceecccCCcccccCcCc
Q psy12695        118 LSGNPIQKITHEAFINVPKLN  138 (369)
Q Consensus       118 L~~N~l~~~~~~~f~~l~~l~  138 (369)
                      |++|.++.++.  |..+.+|.
T Consensus       112 l~~n~l~~lp~--~~~l~~L~  130 (239)
T 2xwt_C          112 IFNTGLKMFPD--LTKVYSTD  130 (239)
T ss_dssp             EEEECCCSCCC--CTTCCBCC
T ss_pred             CCCCCCccccc--cccccccc
Confidence            99999999875  77777665

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=98.89  E-value=1.5e-09  Score=96.46  Aligned_cols=83  Identities=18%  Similarity=0.253  Sum_probs=66.4

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ....+..|+.++|.|.+.|.|.| .+.|++++..+....              ...+...|.|.+++.+|+|.|+|.|.|
T Consensus       220 ~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~--------------~~~~~~~l~i~~v~~~d~G~Y~C~A~N  285 (308)
T 4fom_A          220 DGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGL--------------LASDNTLHFVHPLTFNYSGVYICKVTN  285 (308)
T ss_dssp             CSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSC--------------BCSTTEEECCSCCCSCCCSEEEEEEEE
T ss_pred             ceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcE--------------EEcCCeEEEECCCChhhCEEEEEEEEe
Confidence            44566789999999999999998 599999887654211              011234577889999999999999999


Q ss_pred             CCceEEEEEEEEEeecCC
Q psy12695        232 GAGEVFTNISLNVIKVET  249 (369)
Q Consensus       232 ~~g~~~~~~~l~v~~~~~  249 (369)
                      ..|..+..+.|.|..+|.
T Consensus       286 ~~G~~~~~~~l~V~~~P~  303 (308)
T 4fom_A          286 SLGQRSDQKVIYISDPPH  303 (308)
T ss_dssp             TTEEEEEEEECCEECCC-
T ss_pred             CCCcEEEEEEEEEEcCCC
Confidence            999999999999988764

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.88  E-value=9.5e-09  Score=86.24  Aligned_cols=99  Identities=11%  Similarity=0.208  Sum_probs=67.7

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCC-CCCeEEEEeCC---e--Eeeeccc----ccccCCcceEEEEeecceeeEEEcc
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGS-PVPKIKWIFKE---K--IIANISS----GLANMNKRQYIIKTINSLSNLTIVA  216 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~---~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~L~I~~  216 (369)
                      .+...+ .+.+.+|+.++|.|.+.+. |.+.+.|++..   .  .+.....    ........++.+........|.|.+
T Consensus         3 ~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   81 (218)
T 3s96_B            3 VLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISN   81 (218)
T ss_dssp             SEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESS
T ss_pred             eEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEcc
Confidence            344455 7889999999999999998 89999999832   1  1111111    0000112345444455677899999


Q ss_pred             cCCCCCEEEEEEEEeCCc-----eEEEEEEEEEee
Q psy12695        217 VTMSDSGIYTCRAKNGAG-----EVFTNISLNVIK  246 (369)
Q Consensus       217 v~~~D~G~Y~C~a~n~~g-----~~~~~~~l~v~~  246 (369)
                      ++.+|+|.|.|.+.|..|     .....+.|.|..
T Consensus        82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~  116 (218)
T 3s96_B           82 IQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLG  116 (218)
T ss_dssp             CCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEES
T ss_pred             CCcccCEEEEEEEecCCCCceeEEEcCcEEEEEec
Confidence            999999999999999876     233446777764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.88  E-value=3.2e-09  Score=95.52  Aligned_cols=97  Identities=27%  Similarity=0.333  Sum_probs=84.1

Q ss_pred             CceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP  122 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~  122 (369)
                      ..+.+++++++++.+|..++..++.|+|++|+|.   +.+|.++++|+.|+|++|+|+.+++..|..+++|+.|+|++|.
T Consensus       172 ~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  251 (330)
T 1xku_A          172 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK  251 (330)
T ss_dssp             TCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred             CcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence            3578999999999999999999999999999965   6789999999999999999999999899999999999999999


Q ss_pred             eecccCCcccccCcCcccccc
Q psy12695        123 IQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       123 l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      |+.++. .|..++.|...++.
T Consensus       252 l~~lp~-~l~~l~~L~~L~l~  271 (330)
T 1xku_A          252 LVKVPG-GLADHKYIQVVYLH  271 (330)
T ss_dssp             CSSCCT-TTTTCSSCCEEECC
T ss_pred             CccCCh-hhccCCCcCEEECC
Confidence            998875 36666666554443

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=98.88  E-value=5.1e-09  Score=92.87  Aligned_cols=79  Identities=22%  Similarity=0.293  Sum_probs=65.1

Q ss_pred             eeeccCCeEEEEEEeeCCCCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        155 VTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ..+.+|+.+.|.|.+.|.|.| .+.|++++..+......         .+  ..+...|.|.+++.+|+|.|.|.|.|..
T Consensus       231 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~---------~~--~~~~~~L~I~~v~~~d~G~Y~C~a~N~~  299 (312)
T 2y23_A          231 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKH---------DF--KDGICTLLITEFSKKDAGIYEVILKDDR  299 (312)
T ss_dssp             EEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC---------------CEEEEEECSCSGGGCEEEEEEEESTT
T ss_pred             EEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcE---------EE--ECCEEEEEECcCCHHHCEEEEEEEEcCC
Confidence            578899999999999999998 99999999887642211         11  1235689999999999999999999999


Q ss_pred             ceEEEEEEEEE
Q psy12695        234 GEVFTNISLNV  244 (369)
Q Consensus       234 g~~~~~~~l~v  244 (369)
                      |.....+.|.+
T Consensus       300 G~~~~~~~l~i  310 (312)
T 2y23_A          300 GKDKSRLKLVD  310 (312)
T ss_dssp             CCEEEEEEECS
T ss_pred             CceeeeeEEEe
Confidence            99998888765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.88  E-value=1.1e-09  Score=86.43  Aligned_cols=92  Identities=20%  Similarity=0.191  Sum_probs=51.8

Q ss_pred             eEEEecCCCCC--ccCCCC--CCCccEEEeecceeCh-hhccCCcccCeeeccCCcccccCCcccccccccccccccccc
Q psy12695         48 ETVLCKAKNFT--TIPEQL--DVGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP  122 (369)
Q Consensus        48 ~~~~c~~~~l~--~ip~~~--~~~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~  122 (369)
                      +.+++++++++  .+|..+  ...++.|+|++|+|.. ..|.++++|+.|+|++|+|+...+..|..+++|+.|+|++|.
T Consensus        20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~   99 (149)
T 2je0_A           20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK   99 (149)
T ss_dssp             SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC
T ss_pred             eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc
Confidence            45666666665  555433  2356666666666543 445566666666666666666334445556666666666666


Q ss_pred             eeccc-CCcccccCcCcc
Q psy12695        123 IQKIT-HEAFINVPKLNL  139 (369)
Q Consensus       123 l~~~~-~~~f~~l~~l~~  139 (369)
                      |+.++ ...|..+++|..
T Consensus       100 i~~~~~~~~~~~l~~L~~  117 (149)
T 2je0_A          100 IKDLSTIEPLKKLENLKS  117 (149)
T ss_dssp             CCSHHHHGGGGGCTTCCE
T ss_pred             CCChHHHHHHhhCCCCCE
Confidence            66553 244555555443

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=98.88  E-value=6.7e-09  Score=92.45  Aligned_cols=97  Identities=21%  Similarity=0.283  Sum_probs=70.2

Q ss_pred             CCccCCCCC-eeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEe------ecceeeEEEcccC
Q psy12695        146 PNIRPITPD-VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT------INSLSNLTIVAVT  218 (369)
Q Consensus       146 p~i~~~~~~-~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~L~I~~v~  218 (369)
                      |.+...+.. +.+.+|+.+.|.|.+.|.|.|.+.|++++..+........   ...+....      ....+.|.|.+++
T Consensus       209 P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~i~~v~  285 (315)
T 1itb_B          209 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLG---EDYYSVENPANKRRSTLITVLNISEIE  285 (315)
T ss_dssp             CEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEE---EEEEEECCSSCGGGEEEEEEEEESSCC
T ss_pred             CEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCccccccc---ccceeeeccCCCceeEEEEEEEEeecC
Confidence            344333332 5789999999999999999999999999887654221100   00111100      0124589999999


Q ss_pred             CCC-CEEEEEEEEeCCceEEEEEEEEEe
Q psy12695        219 MSD-SGIYTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       219 ~~D-~G~Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      .+| +|.|+|.|.|..|.....+.|.|.
T Consensus       286 ~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          286 SRFYKHPFTCFAKNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             GGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred             HHHcCCceEEEEecCCCceeEEEEEEec
Confidence            999 999999999999999999888774

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=98.87  E-value=8.5e-09  Score=96.09  Aligned_cols=100  Identities=14%  Similarity=0.206  Sum_probs=64.8

Q ss_pred             cccccCC-----CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEE
Q psy12695        139 LEDFACS-----PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT  213 (369)
Q Consensus       139 ~~~~~c~-----p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  213 (369)
                      ..+|.|.     +++...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+.....  .  .      ........|.
T Consensus        37 ~~~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~--~--~------~~~~~~~sL~  106 (423)
T 3qs7_E           37 PEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH--F--D------LQNRGVVSMV  106 (423)
T ss_dssp             -------------------CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCB--C-------------CEEEEE
T ss_pred             HHHcCCccCCCCCcceeccccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccce--e--c------cccceEEEEE
Confidence            3456662     2344455688999999999999999999999999999876542111  0  0      0011134699


Q ss_pred             EcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecC
Q psy12695        214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       214 I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      |.+++.+|+|.|+|.|.|..|.....+.|.|...+
T Consensus       107 I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p  141 (423)
T 3qs7_E          107 ILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTL  141 (423)
T ss_dssp             ESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC---
T ss_pred             EeecCcccCEEEEEEEEcCCCcEEEEEEEEEecCc
Confidence            99999999999999999999999888888887543

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=98.87  E-value=1.1e-08  Score=85.29  Aligned_cols=82  Identities=17%  Similarity=0.254  Sum_probs=66.3

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        154 DVTAEENENVTLSCRATGSPVP--KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      .+.+..|++++|.|.+ |.|.|  .|.|++.+..+          ++ .   ........|.|.+++.+|+|.|.|.|.|
T Consensus        16 ~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l----------~~-~---~~~~~~~~L~I~~v~~~d~G~Y~C~a~n   80 (210)
T 1gsm_A           16 VVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL----------GA-V---QSDTGRSVLTVRNASLSAAGTRVCVGSC   80 (210)
T ss_dssp             EEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT----------CC-E---EEESSEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc----------Cc-E---EecCCccEEEECccCcccCceEEEEEEe
Confidence            3689999999999999 99888  99999854221          11 1   1124467899999999999999999999


Q ss_pred             CCceEEEEEEEEEeecCCc
Q psy12695        232 GAGEVFTNISLNVIKVETA  250 (369)
Q Consensus       232 ~~g~~~~~~~l~v~~~~~~  250 (369)
                      ..|.....+.|.|...|..
T Consensus        81 ~~~~~~~~~~ltV~~~P~~   99 (210)
T 1gsm_A           81 GGRTFQHTVQLLVYAFPNQ   99 (210)
T ss_dssp             TTEEEEEEEEEEEEBCCSE
T ss_pred             CCCceEEEEEEEEEecCCC
Confidence            9999888999999987643

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=98.87  E-value=1.3e-08  Score=76.15  Aligned_cols=84  Identities=15%  Similarity=0.262  Sum_probs=58.5

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCC-----CCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSP-----VPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM  219 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p-----~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~  219 (369)
                      ..|..+.+.+|++++|.|.+.+.+     .+.+.|++..  .   .+.............++..........|.|.+++.
T Consensus         6 q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~   85 (113)
T 1dlf_L            6 QTPLSLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEA   85 (113)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCG
T ss_pred             EeCCEEEEcCCCCEEEEEEccccccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEccCCEEEEEECCCCh
Confidence            346678999999999999998766     4679999853  1   12211111111113456555455567899999999


Q ss_pred             CCCEEEEEEEEeCC
Q psy12695        220 SDSGIYTCRAKNGA  233 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~  233 (369)
                      +|+|.|.|.+.+..
T Consensus        86 ~DsG~Y~C~~~~~~   99 (113)
T 1dlf_L           86 EDLGVYFCSQSTHV   99 (113)
T ss_dssp             GGCEEEEEEECSSS
T ss_pred             HHCEEEEEEEecCC
Confidence            99999999998753

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.87  E-value=3.4e-09  Score=92.77  Aligned_cols=98  Identities=17%  Similarity=0.149  Sum_probs=84.8

Q ss_pred             CceEEEecCCCCCccCC-CC--CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPE-QL--DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLS  119 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~-~~--~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  119 (369)
                      ..+.++.++++++.++. .+  ...++.|+|++|+|.   +.+|.++++|+.|+|++|+|+.+++.+|.++++|+.|+|+
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            35789999999998886 33  357999999999954   6789999999999999999999999999999999999999


Q ss_pred             ccceecccCCcccccCcCcccccc
Q psy12695        120 GNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       120 ~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      +|.+..+....|..+++|...++.
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~  132 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVA  132 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECC
T ss_pred             CCCccccCchhcccCCCCCEEECc
Confidence            999999988888888887665544

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=98.87  E-value=1e-08  Score=80.18  Aligned_cols=97  Identities=18%  Similarity=0.218  Sum_probs=65.3

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC-----eEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      ..|..+.+.+|++++|.|.+.+.+...+.|++..     ..+.............+|..........|+|.+++.+|+|.
T Consensus         5 Q~p~~v~v~~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~l~~~DsG~   84 (143)
T 3u6r_L            5 QSPATLSLSPGERATLSCRASQSVNKYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISNLEPEDFAV   84 (143)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             ECCCEEEEeCCCCEEEEEEECCCCceeeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEccCCEEEEEEccCcccCCEE
Confidence            4466788999999999999988777789999853     12222111111112345665555567799999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEee
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      |+|.+.+..........|.|..
T Consensus        85 Y~C~~~~~~~~fg~gt~L~V~~  106 (143)
T 3u6r_L           85 YYCQQRSDWVTFGGGTKVEIKA  106 (143)
T ss_dssp             EEEEECSSBCEECCCEEEEEC-
T ss_pred             EEEEEecCCCEECCCEEEEECC
Confidence            9999976542222335566653

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=98.86  E-value=1.5e-08  Score=85.75  Aligned_cols=96  Identities=22%  Similarity=0.263  Sum_probs=63.8

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCC---eEEEEeCCeEee--eccccc------ccCCcceEEEE---eecceeeEEEccc
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVP---KIKWIFKEKIIA--NISSGL------ANMNKRQYIIK---TINSLSNLTIVAV  217 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p---~i~W~~~~~~~~--~~~~~~------~~~~~~~~~~~---~~~~~~~L~I~~v  217 (369)
                      ...+.+.+|++++|.|.+.+.+.+   .|.|++++....  ....+.      ...-..+....   ...+...|.|.++
T Consensus        11 ~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   90 (226)
T 4f80_A           11 SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNV   90 (226)
T ss_dssp             SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSC
T ss_pred             CCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeC
Confidence            345889999999999999887665   599999764211  000000      00001111111   1234568999999


Q ss_pred             CCCCCEEEEEEEEeCCceEEEEEEEEEeec
Q psy12695        218 TMSDSGIYTCRAKNGAGEVFTNISLNVIKV  247 (369)
Q Consensus       218 ~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~  247 (369)
                      +.+|+|.|.|.|.|..|.....+.+.+...
T Consensus        91 ~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~  120 (226)
T 4f80_A           91 TASDSGKYLCYFQDGDFYEKALVELKVAAL  120 (226)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEEBC
T ss_pred             chHHCeeEEEEEECCCcEEEEEEEEeeccc
Confidence            999999999999999988877766665543

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=98.86  E-value=7.5e-09  Score=77.80  Aligned_cols=95  Identities=22%  Similarity=0.229  Sum_probs=60.9

Q ss_pred             CCCeeeccCCeEEEEEEeeC-CCCCeEEEEeCCeE-------eeecccc-cccCCcceEEEE--eecceeeEEEcccCCC
Q psy12695        152 TPDVTAEENENVTLSCRATG-SPVPKIKWIFKEKI-------IANISSG-LANMNKRQYIIK--TINSLSNLTIVAVTMS  220 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~-------~~~~~~~-~~~~~~~~~~~~--~~~~~~~L~I~~v~~~  220 (369)
                      +..+.+.+|++++|.|.+.+ .....+.|++....       +...... .......++.+.  .......|.|.+++.+
T Consensus         4 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~   83 (116)
T 2or8_A            4 YVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVES   83 (116)
T ss_dssp             CEEEEEETTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGG
T ss_pred             cceEEEEeCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCcc
Confidence            45688999999999999865 34567999997521       1111000 000112233321  1234568999999999


Q ss_pred             CCEEEEEEEEeCCceE--EEEEEEEEee
Q psy12695        221 DSGIYTCRAKNGAGEV--FTNISLNVIK  246 (369)
Q Consensus       221 D~G~Y~C~a~n~~g~~--~~~~~l~v~~  246 (369)
                      |+|.|.|.+.+..+..  ...+.|.|..
T Consensus        84 DsG~Y~C~v~~~~~~~~~~~~~~l~V~p  111 (116)
T 2or8_A           84 DSGLYCCRVEIPGWFNDQKVTFSLQVKP  111 (116)
T ss_dssp             GCEEEEEEECCSSTTCCEEEEEEEEEEC
T ss_pred             cCEEEEEEEEcCCcccccEEEEEEEECC
Confidence            9999999998875443  5556666643

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.86  E-value=1.1e-08  Score=88.05  Aligned_cols=100  Identities=22%  Similarity=0.313  Sum_probs=68.9

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC-----eEeeecccccccCCcceEEEEeecceeeEEEcccCCCC
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD  221 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D  221 (369)
                      .+...+..+.+.+|+.++|.|.+.+.|.+.+.|+++.     ..+.............++..........|.|.+++.+|
T Consensus         6 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   85 (250)
T 3esu_F            6 VLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQED   85 (250)
T ss_dssp             CEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhh
Confidence            3455677888999999999999999999999999853     11111111111112234555555566789999999999


Q ss_pred             CEEEEEEEEeCCceEE-EEEEEEEee
Q psy12695        222 SGIYTCRAKNGAGEVF-TNISLNVIK  246 (369)
Q Consensus       222 ~G~Y~C~a~n~~g~~~-~~~~l~v~~  246 (369)
                      +|.|.|.+.|..+... ....|.|..
T Consensus        86 ~G~Y~C~~~n~~~~~~~~~~~l~V~~  111 (250)
T 3esu_F           86 IGTYFCQQGNTLPWTFGGGTKLEIRR  111 (250)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             CEEEEEEEeeCCCceECCCEEEEEEC
Confidence            9999999998766532 334566654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.86  E-value=1.7e-09  Score=88.03  Aligned_cols=97  Identities=20%  Similarity=0.219  Sum_probs=80.8

Q ss_pred             CceEEEecCCCCCccCCCCC--CCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCC-ccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQLD--VGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPS-HILDSILELRELKLS  119 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~~~--~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~  119 (369)
                      ..+.++.++|.++.++ .+.  ..++.|+|++|+|.   +..|.++++|+.|+|++|+|+.++. ..|..+++|+.|+|+
T Consensus        43 ~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~  121 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL  121 (176)
T ss_dssp             CCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred             CCCEEECCCCCCCccc-ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence            3678999999999884 343  57999999999966   4668999999999999999999886 578899999999999


Q ss_pred             ccceecccCC---cccccCcCcccccc
Q psy12695        120 GNPIQKITHE---AFINVPKLNLEDFA  143 (369)
Q Consensus       120 ~N~l~~~~~~---~f~~l~~l~~~~~~  143 (369)
                      +|+++.++..   .|..+++|...++.
T Consensus       122 ~N~i~~~~~~~~~~~~~l~~L~~Ld~~  148 (176)
T 1a9n_A          122 RNPVTNKKHYRLYVIYKVPQVRVLDFQ  148 (176)
T ss_dssp             SSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             CCCCCCcHhHHHHHHHHCCccceeCCC
Confidence            9999988765   57777777665543

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.86  E-value=5.1e-09  Score=87.40  Aligned_cols=86  Identities=20%  Similarity=0.227  Sum_probs=64.3

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      .....+..|+.+.+.|.+.|.|.|.|.|++++..+........   ...     ....+.|.|.++..+|.|.|+|.|.|
T Consensus       125 ~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~~~---~~~-----~~~~s~L~i~~~~~~d~g~YtC~a~N  196 (218)
T 4frw_A          125 GPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKH---SRS-----AAVTSEFHLVPSRSMNGQPLTCVVSH  196 (218)
T ss_dssp             CSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEEC---SSS-----EEEEEEEEECCCGGGTTCEEEEEEEC
T ss_pred             eeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceEec---CCc-----EEEEEEEEEeeCCHHhCeEEEEEEEe
Confidence            4556778899999999999999999999999876543221100   000     11246799999999999999999999


Q ss_pred             CCceEEEEEEEEEe
Q psy12695        232 GAGEVFTNISLNVI  245 (369)
Q Consensus       232 ~~g~~~~~~~l~v~  245 (369)
                      ..|.....+.+.|.
T Consensus       197 ~~g~~~~~~t~~v~  210 (218)
T 4frw_A          197 PGLLQDQRITHILH  210 (218)
T ss_dssp             TTCSSCEEEEEECC
T ss_pred             CCCCeEEEEEEEEE
Confidence            99987666655544

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=98.86  E-value=5.8e-09  Score=79.41  Aligned_cols=99  Identities=20%  Similarity=0.254  Sum_probs=61.5

Q ss_pred             CCCCeeeccCCeEEEEEEeeCC----CCCeEEEEeCCeE------eeecccccc-----cCCcceEEEEe--ecceeeEE
Q psy12695        151 ITPDVTAEENENVTLSCRATGS----PVPKIKWIFKEKI------IANISSGLA-----NMNKRQYIIKT--INSLSNLT  213 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~----p~p~i~W~~~~~~------~~~~~~~~~-----~~~~~~~~~~~--~~~~~~L~  213 (369)
                      .+..+.+.+|++++|.|.+.+.    +.+.+.|++++..      +........     ..-..++.+..  ......|.
T Consensus         5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   84 (124)
T 1neu_A            5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIV   84 (124)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEE
T ss_pred             cCCeEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEEE
Confidence            3466889999999999998643    4678999985420      111111000     00122333321  23456899


Q ss_pred             EcccCCCCCEEEEEEEEeCCce--EEEEEEEEEeecCC
Q psy12695        214 IVAVTMSDSGIYTCRAKNGAGE--VFTNISLNVIKVET  249 (369)
Q Consensus       214 I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~l~v~~~~~  249 (369)
                      |.+++.+|+|.|.|.+.+..+.  ....+.|.|...++
T Consensus        85 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~~p~  122 (124)
T 1neu_A           85 IHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVP  122 (124)
T ss_dssp             ECSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC---
T ss_pred             EccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEecCCC
Confidence            9999999999999999987764  46778888877653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.86  E-value=6.7e-10  Score=108.12  Aligned_cols=97  Identities=24%  Similarity=0.249  Sum_probs=78.7

Q ss_pred             CCCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeChhhccCCcccCeeeccCCcccccCCcccccccc
Q psy12695         33 AECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILE  112 (369)
Q Consensus        33 ~~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~  112 (369)
                      ..||..|.|... ..+.++|++++|+.+|..++.+++.|+|++|+|..-.- .+++|+.|+|++|+|+.||.    .+++
T Consensus        29 ~~~~~~~~c~~~-~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~lp~----~l~~  102 (622)
T 3g06_A           29 AVVQKMRACLNN-GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLTSLPV----LPPG  102 (622)
T ss_dssp             HHHHHHHHHHHH-CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCSCCCC----CCTT
T ss_pred             ccCcccccccCC-CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCCcCCC----CCCC
Confidence            357777888754 35789999999999999999999999999999773222 67899999999999999887    5688


Q ss_pred             cccccccccceecccCCcccccCc
Q psy12695        113 LRELKLSGNPIQKITHEAFINVPK  136 (369)
Q Consensus       113 L~~L~L~~N~l~~~~~~~f~~l~~  136 (369)
                      |+.|+|++|.|+.++. .+.++..
T Consensus       103 L~~L~Ls~N~l~~l~~-~l~~L~~  125 (622)
T 3g06_A          103 LLELSIFSNPLTHLPA-LPSGLCK  125 (622)
T ss_dssp             CCEEEECSCCCCCCCC-CCTTCCE
T ss_pred             CCEEECcCCcCCCCCC-CCCCcCE
Confidence            9999999998888876 4444444

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.85  E-value=2.1e-08  Score=83.74  Aligned_cols=95  Identities=15%  Similarity=0.216  Sum_probs=66.3

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeC--CeEe---eecccccccCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFK--EKII---ANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      +...+ .+.+.+|+.++|.|.+.  |.+.+.|+++  +...   .............++..........|.|.+++.+|+
T Consensus         4 v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   80 (211)
T 3tv3_L            4 LTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDE   80 (211)
T ss_dssp             CBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             EEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHC
Confidence            34445 78899999999999998  8889999984  2211   111111111122345544455677899999999999


Q ss_pred             EEEEEEEEeCCc--eEEEEEEEEEe
Q psy12695        223 GIYTCRAKNGAG--EVFTNISLNVI  245 (369)
Q Consensus       223 G~Y~C~a~n~~g--~~~~~~~l~v~  245 (369)
                      |.|.|.+.|..|  .....+.|.|.
T Consensus        81 G~Y~C~~~~~~~~~~~~~~~~l~V~  105 (211)
T 3tv3_L           81 AVYYCGSLVGNWDVIFGGGTKLTVL  105 (211)
T ss_dssp             EEEEEEEEETTTEEEECCCEEEEEC
T ss_pred             EEEEEEEecCCCceeECCCceEEEe
Confidence            999999999988  34455677776

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=98.85  E-value=1.3e-08  Score=85.05  Aligned_cols=95  Identities=23%  Similarity=0.349  Sum_probs=65.9

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--eEe---eecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEE
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKE--KII---ANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYT  226 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  226 (369)
                      |..+.+.+|+.++|.|.+.|.|.+.+.|+++.  ...   .............++..........|.|.+++.+|+|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            67889999999999999999998999999843  211   1100000001123455444455679999999999999999


Q ss_pred             EEEEeCCceEEE-EEEEEEee
Q psy12695        227 CRAKNGAGEVFT-NISLNVIK  246 (369)
Q Consensus       227 C~a~n~~g~~~~-~~~l~v~~  246 (369)
                      |.+.|..+.... ...|.|..
T Consensus        87 C~~~~~~~~~~~~~~~l~V~~  107 (210)
T 1lk3_L           87 CQQSWNGPLTFGAGTKLELKR  107 (210)
T ss_dssp             EEECSSSSCEECCCEEEEECC
T ss_pred             EEEEcCCCceeCCCEEEEEcC
Confidence            999998775432 34566654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.85  E-value=1.6e-09  Score=85.49  Aligned_cols=95  Identities=26%  Similarity=0.285  Sum_probs=79.1

Q ss_pred             CceEEEecCCCCCccCCCC--CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccC-Cccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVP-SHILDSILELRELKLS  119 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~L~  119 (369)
                      ..+.++.+++.++.+ ..+  ...++.|+|++|+|.   +..|.++++|+.|+|++|+|+.++ ...|..+++|+.|+|+
T Consensus        43 ~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~  121 (149)
T 2je0_A           43 ELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF  121 (149)
T ss_dssp             TCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECT
T ss_pred             CCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCc
Confidence            367899999999988 334  357999999999986   456778999999999999999975 3678999999999999


Q ss_pred             ccceecccC---CcccccCcCcccc
Q psy12695        120 GNPIQKITH---EAFINVPKLNLED  141 (369)
Q Consensus       120 ~N~l~~~~~---~~f~~l~~l~~~~  141 (369)
                      +|.++.++.   ..|..+++|...+
T Consensus       122 ~N~l~~~~~~~~~~~~~l~~L~~L~  146 (149)
T 2je0_A          122 NCEVTNLNDYRENVFKLLPQLTYLD  146 (149)
T ss_dssp             TCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred             CCcccchHHHHHHHHHHCCCccccc
Confidence            999999887   5777777766544

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=98.85  E-value=1.4e-09  Score=75.75  Aligned_cols=61  Identities=18%  Similarity=0.310  Sum_probs=50.0

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEccc-CCCCCEEEEEEE
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV-TMSDSGIYTCRA  229 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a  229 (369)
                      .|....+..|++++|.|.+.|.|.  |.|++++..+...                  ..+.|.|.++ ..+|+|.|.|.|
T Consensus         5 ~p~~~v~~~G~~v~L~C~~~g~P~--i~W~kdg~~l~~~------------------~~~~L~I~~v~~~~DsG~Y~C~A   64 (82)
T 3r08_E            5 NIEYKVSISGTSVELTCPLDSDEN--LKWEKNGQELPQK------------------HDKHLVLQDFSEVEDSGYYVCYT   64 (82)
T ss_dssp             CCCCEEEEETTEEEEECSSCCCSS--CEEEETTEECTTC------------------CSSCCBCCSCCTTTTCSCEEEEC
T ss_pred             CCceeEEEcCCeEEEEEECCCCCc--EEEEECCEECcCC------------------CCCEEEECccCccCcCEEEEEEE
Confidence            356677889999999999999983  9999999766421                  2457999996 789999999998


Q ss_pred             Ee
Q psy12695        230 KN  231 (369)
Q Consensus       230 ~n  231 (369)
                      .+
T Consensus        65 ~t   66 (82)
T 3r08_E           65 PA   66 (82)
T ss_dssp             SS
T ss_pred             cc
Confidence            65

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=98.85  E-value=1.3e-09  Score=90.66  Aligned_cols=98  Identities=20%  Similarity=0.443  Sum_probs=67.7

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      .|.+...+....+.+|+.+.|.|.+ .|.|.|.+.|++++..+.............++.  .....+.|.|.+++.+|+|
T Consensus       107 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~~~~~d~G  184 (209)
T 1nbq_A          107 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV--LNPTTGELVFDPLSASDTG  184 (209)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCC--CCTTTCCEEESSCCGGGCC
T ss_pred             CCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceE--EcCCcceEEEEeccccCCe
Confidence            3444444455678999999999997 899999999999987665432211111111111  1123568999999999999


Q ss_pred             EEEEEEEeCCceEEE--EEEEEE
Q psy12695        224 IYTCRAKNGAGEVFT--NISLNV  244 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~--~~~l~v  244 (369)
                      .|+|.|.|..|....  .+.|.|
T Consensus       185 ~Y~C~a~n~~g~~~~s~~v~l~V  207 (209)
T 1nbq_A          185 EYSCEARNGYGTPMTSNAVRMEA  207 (209)
T ss_dssp             CEEEEEECSSSCCEECCCBCCEE
T ss_pred             EEEEEEeCCcCcccccccEEEEE
Confidence            999999999998733  344444

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=98.84  E-value=1e-08  Score=73.55  Aligned_cols=92  Identities=14%  Similarity=0.190  Sum_probs=60.1

Q ss_pred             CCCeeeccCCeEEEEEEeeC-CCCCeEEEEeCCeEeeecccccccCCcceEEEE--eecceeeEEEcccCCCCCEEEEEE
Q psy12695        152 TPDVTAEENENVTLSCRATG-SPVPKIKWIFKEKIIANISSGLANMNKRQYIIK--TINSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      .+..++..|+.+.|.|.+.+ .|.|.|+|.|.+......-....   ..+-...  .......|.|.+|..+|+|.|.|.
T Consensus        21 ~S~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~---q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCs   97 (122)
T 1xau_A           21 NSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGP---QLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCS   97 (122)
T ss_dssp             TEEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBT---TEEEEEECSSSSCEEEEEETTCCGGGCEEEEEE
T ss_pred             eccEEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccce---eeecceeccCCceeEEEEEeeEEEcCCccEEEE
Confidence            34567899999999999955 68999999997642211000000   0000000  011245899999999999999999


Q ss_pred             EEeCCceEEE-EEEEEEee
Q psy12695        229 AKNGAGEVFT-NISLNVIK  246 (369)
Q Consensus       229 a~n~~g~~~~-~~~l~v~~  246 (369)
                      |.|..|.... .+.+.|..
T Consensus        98 An~~~g~ieSHs~ti~V~~  116 (122)
T 1xau_A           98 TNFNSQVINSHSVTIHVRE  116 (122)
T ss_dssp             EEETTEEEECCCEEEEEC-
T ss_pred             eeCCCCceeeeEEEEEEEe
Confidence            9999887543 35555554

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.84  E-value=6.9e-09  Score=83.49  Aligned_cols=75  Identities=21%  Similarity=0.357  Sum_probs=59.3

Q ss_pred             CCeeeccCCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        153 PDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..                 ......|.|.+++.+|+|.|+|.|.|
T Consensus        93 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~-----------------~~~~~~L~i~~v~~~d~G~Y~C~a~n  155 (170)
T 3ry4_A           93 PHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF-----------------SHLDPTFSIPQANHSHSGDYHCTGNI  155 (170)
T ss_dssp             SCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE-----------------ESSCCEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCceeecCCeEEEEEECCCCCCCceEEEEECCeEccc-----------------cCCCCeEEEEeccccCCEEEEEEEEe
Confidence            45567899999999999 5566789999999876542                 11245799999999999999999999


Q ss_pred             CCce-EEEEEEEEE
Q psy12695        232 GAGE-VFTNISLNV  244 (369)
Q Consensus       232 ~~g~-~~~~~~l~v  244 (369)
                      ..|. .+..+.|.|
T Consensus       156 ~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          156 GYTLFSSKPVTITV  169 (170)
T ss_dssp             TTEEEECCCEEEEE
T ss_pred             CcCccccccEEEEE
Confidence            9987 444555554

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=98.84  E-value=9.3e-09  Score=77.03  Aligned_cols=82  Identities=21%  Similarity=0.372  Sum_probs=56.2

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--eE---eeecccccccCCcceEEEEe---ecceeeEEEcccCCCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--KI---IANISSGLANMNKRQYIIKT---INSLSNLTIVAVTMSD  221 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~L~I~~v~~~D  221 (369)
                      ..|..+.+.+|++++|.|.+.+.+ +.+.|+++.  ..   +......  .....++.+..   ......|.|.+++.+|
T Consensus         6 q~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~--~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D   82 (113)
T 1h5b_A            6 QSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASG--TKENGRLKSAFDSERARYSTLHIRDAQLED   82 (113)
T ss_dssp             EECSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSS--EEEETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred             ECCCEEEEecCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCC--CccCCceEEEEccCCCCEEEEEECCCChhh
Confidence            346778899999999999998765 689999854  11   1111100  01122333322   2345689999999999


Q ss_pred             CEEEEEEEEeCCc
Q psy12695        222 SGIYTCRAKNGAG  234 (369)
Q Consensus       222 ~G~Y~C~a~n~~g  234 (369)
                      +|.|.|.+.|..|
T Consensus        83 sG~Y~C~~~n~~~   95 (113)
T 1h5b_A           83 SGTYFCAAEASSG   95 (113)
T ss_dssp             CEEEEEEEECSSS
T ss_pred             CEEEEEEEecCCC
Confidence            9999999998765

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.84  E-value=1.3e-08  Score=87.20  Aligned_cols=101  Identities=17%  Similarity=0.204  Sum_probs=67.1

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      +...|..+.+.+|++++|.|.+.+.|.+.+.|+++.  .   .+.............++.+........|.|.+++.+|+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (242)
T 2znx_A            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (242)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHC
Confidence            344567789999999999999999999999999853  1   11111100000112355554445567899999999999


Q ss_pred             EEEEEEEEeCCceE-EEEEEEEEeecC
Q psy12695        223 GIYTCRAKNGAGEV-FTNISLNVIKVE  248 (369)
Q Consensus       223 G~Y~C~a~n~~g~~-~~~~~l~v~~~~  248 (369)
                      |.|.|.+.|..+.. ...+.|.|...+
T Consensus        84 G~Y~C~~~n~~~~~~~~~~~L~V~~~~  110 (242)
T 2znx_A           84 GMYFCQQSNSXPYTFGGGTKLEITGGG  110 (242)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             EEEEEeEecCCceEECCCEEEEEcCCC
Confidence            99999999876542 233566665543

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.84  E-value=1.1e-08  Score=85.52  Aligned_cols=97  Identities=20%  Similarity=0.275  Sum_probs=66.7

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCe--Ee---eecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK--II---ANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      ..|..+.+.+|+.+.|.|.+.|.|.+.|.|++++.  ..   .............++..........|.|.+++.+|+|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   85 (213)
T 3d9a_L            6 QSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGM   85 (213)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEE
Confidence            34677889999999999999999999999998531  11   11000000011234544444556789999999999999


Q ss_pred             EEEEEEeCCceEEE-EEEEEEee
Q psy12695        225 YTCRAKNGAGEVFT-NISLNVIK  246 (369)
Q Consensus       225 Y~C~a~n~~g~~~~-~~~l~v~~  246 (369)
                      |.|.+.|..|.... .+.|.|..
T Consensus        86 Y~C~~~~~~~~~~~~~~~l~V~~  108 (213)
T 3d9a_L           86 YFCQQSNSWPYTFGGGTKLEIKR  108 (213)
T ss_dssp             EEEEECSSSSCEECCCEEEEECC
T ss_pred             EEEeeecCCcceeCCCEEEEEec
Confidence            99999998876433 34666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.84  E-value=5.7e-09  Score=91.83  Aligned_cols=98  Identities=20%  Similarity=0.275  Sum_probs=84.1

Q ss_pred             CceEEEecCCCCCccCCC-C--CCCccEEEeecceeC---hhhccCCcccCeeeccCCc-ccccCCcccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQ-L--DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQ-IQFVPSHILDSILELRELKL  118 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~-~--~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L  118 (369)
                      ..+.++.++++++.+|.. +  ...++.|+|++|+|.   +.+|.++++|++|+|++|+ ++.+++..|..+++|+.|+|
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            357899999999988854 3  357999999999855   6789999999999999997 99998889999999999999


Q ss_pred             cccceecccCCcccccCcCcccccc
Q psy12695        119 SGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       119 ~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      ++|.++.+.+..|.++++|...++.
T Consensus       113 ~~n~l~~~~~~~~~~l~~L~~L~l~  137 (285)
T 1ozn_A          113 DRCGLQELGPGLFRGLAALQYLYLQ  137 (285)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCcCCEECHhHhhCCcCCCEEECC
Confidence            9999999988888888887665544

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.84  E-value=1.2e-08  Score=88.24  Aligned_cols=105  Identities=18%  Similarity=0.274  Sum_probs=69.9

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--eEe---eecccccccCCcceEEEEeecceeeEEEcccCC
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--KII---ANISSGLANMNKRQYIIKTINSLSNLTIVAVTM  219 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~  219 (369)
                      .|.+...+..+.+.+|++++|.|.+.+.|.+.+.|+++.  ...   .............++..........|.|.+++.
T Consensus       138 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  217 (256)
T 3umt_A          138 DIQLTQSPSSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLES  217 (256)
T ss_dssp             CCCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCG
T ss_pred             ccEEEcCCCeEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCCh
Confidence            344555567788999999999999999999999999842  211   111111111112355555555667899999999


Q ss_pred             CCCEEEEEEEEeCCceEEE-EEEEEEeecCC
Q psy12695        220 SDSGIYTCRAKNGAGEVFT-NISLNVIKVET  249 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~g~~~~-~~~l~v~~~~~  249 (369)
                      +|+|.|+|.+.|..+.... ...|.|...+.
T Consensus       218 ~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~~~  248 (256)
T 3umt_A          218 EDFVDYYCLQYASSPPTFGGGTKLEIKRAAA  248 (256)
T ss_dssp             GGCSEEEEEECSSSSCEECCCEEEEEC----
T ss_pred             hHCEEEEEEEeeCCCcEECCCEEEEEECCCc
Confidence            9999999999987655433 46677765543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.84  E-value=2.5e-09  Score=98.53  Aligned_cols=96  Identities=24%  Similarity=0.446  Sum_probs=74.1

Q ss_pred             ceEEEecCCCCCccCCCC---CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQL---DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG  120 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~---~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  120 (369)
                      .+.++..++.++.+|..+   ...+++|+|++|+|.   +.+|.++++|++|+|++|+|+.+++.+|.++++|+.|+|++
T Consensus        47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  126 (390)
T 3o6n_A           47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER  126 (390)
T ss_dssp             CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC
Confidence            456777788888888654   256888888888854   46788888888888888888888888888888888888888


Q ss_pred             cceecccCCcccccCcCccccc
Q psy12695        121 NPIQKITHEAFINVPKLNLEDF  142 (369)
Q Consensus       121 N~l~~~~~~~f~~l~~l~~~~~  142 (369)
                      |.|+.++.+.|..+++|...++
T Consensus       127 n~l~~l~~~~~~~l~~L~~L~L  148 (390)
T 3o6n_A          127 NDLSSLPRGIFHNTPKLTTLSM  148 (390)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CccCcCCHHHhcCCCCCcEEEC
Confidence            8888888777777777655443

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=98.83  E-value=3.9e-08  Score=74.77  Aligned_cols=86  Identities=14%  Similarity=0.254  Sum_probs=59.9

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCCC--CCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCC
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGSP--VPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM  219 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~  219 (369)
                      .+.. |..+.+.+|++++|.|.+.+.+  ...+.|++..  .   .+.............+|..........|+|.+++.
T Consensus         3 ~v~Q-p~~v~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~l~~   81 (123)
T 3t0v_A            3 VLTQ-SPSVSGTPGQKVTIFCSGSSSNVEDNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGSKSGTSASLAISGLRS   81 (123)
T ss_dssp             SBEE-CCCEEECTTCCEEEEEECCTTTTTTSCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCG
T ss_pred             ccCc-cCeEEEcCCCCEEEEEecCCCccCCCeEEEEEECCCCCCEEEEEECCcCCCCCcCCEEEEccCCEEEEEECCCCH
Confidence            3344 5688999999999999998754  3679999842  1   22221111111123456655556678999999999


Q ss_pred             CCCEEEEEEEEeCC
Q psy12695        220 SDSGIYTCRAKNGA  233 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~  233 (369)
                      +|+|.|.|.+.+..
T Consensus        82 ~DsG~Y~C~~~~~~   95 (123)
T 3t0v_A           82 EDEADYYCLSWDDS   95 (123)
T ss_dssp             GGCEEEEEEEEETT
T ss_pred             HHCEEEEEEEEcCC
Confidence            99999999998764

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=98.83  E-value=2.2e-08  Score=74.41  Aligned_cols=82  Identities=16%  Similarity=0.278  Sum_probs=56.3

Q ss_pred             CCCeeeccCCeEEEEEE-eeCCC-CCeEEEEeCCeEe---eecccccccCCcceEEEE--eecceeeEEEcccCCCCCEE
Q psy12695        152 TPDVTAEENENVTLSCR-ATGSP-VPKIKWIFKEKII---ANISSGLANMNKRQYIIK--TINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~-~~g~p-~p~i~W~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |..+.+.+|++++|.|. +.+.+ .+.+.|+++....   .............++.+.  .......|+|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~   86 (109)
T 1pew_A            7 PHSVSESPGKTVTISCTRSSGNIASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEAD   86 (109)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCEEEcCCCCEEEEEEeCCCCCCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCChhhCEE
Confidence            67788999999999999 77665 4789999976221   111111111113455554  33446789999999999999


Q ss_pred             EEEEEEeCC
Q psy12695        225 YTCRAKNGA  233 (369)
Q Consensus       225 Y~C~a~n~~  233 (369)
                      |.|.+.+..
T Consensus        87 Y~C~~~~~~   95 (109)
T 1pew_A           87 YYCQSYDAR   95 (109)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEeCC
Confidence            999998854

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=98.83  E-value=4.6e-09  Score=88.94  Aligned_cols=89  Identities=17%  Similarity=0.234  Sum_probs=58.7

Q ss_pred             CCCCeeeccCCeEEEEEEeeC-CCCCeEEEEeCCeEeeecccccc-cCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695        151 ITPDVTAEENENVTLSCRATG-SPVPKIKWIFKEKIIANISSGLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      .+....+.+|+.+.+.|.+.| .|.|.|.|+++++.......... .....        ....+.+..++.+|+|.|+|.
T Consensus       124 ~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g--------~~~v~s~l~v~~~d~G~YtC~  195 (226)
T 4f80_A          124 LHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVG--------LYAVAASVIMRGSSGEGVSCT  195 (226)
T ss_dssp             CEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCEECTTS--------CEEEEEEEEECC----CEEEE
T ss_pred             ccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEEECCCC--------cEEEEEEEEechhcCcEEEEE
Confidence            344567789999999999988 59999999997654432111111 00111        112344556788999999999


Q ss_pred             EEeCCceEEEEEEEEEeec
Q psy12695        229 AKNGAGEVFTNISLNVIKV  247 (369)
Q Consensus       229 a~n~~g~~~~~~~l~v~~~  247 (369)
                      |.|..|.....+.|.|..+
T Consensus       196 a~N~~g~~~~~~~v~v~ep  214 (226)
T 4f80_A          196 IRSSLLGLEKTASISIADP  214 (226)
T ss_dssp             EEETTTTEEEEEEECCCTT
T ss_pred             EEeCCCCeEEEEEEEECCC
Confidence            9999999998888887653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.83  E-value=1.7e-09  Score=97.50  Aligned_cols=96  Identities=22%  Similarity=0.288  Sum_probs=78.7

Q ss_pred             ceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccccce
Q psy12695         47 KETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI  123 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l  123 (369)
                      .+.++.+++.++.+|..++..++.|+|++|.|.   +.+|.++++|+.|+|++|+|+.+++.+|..+++|+.|+|++|.|
T Consensus       174 L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  253 (332)
T 2ft3_A          174 LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL  253 (332)
T ss_dssp             CSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred             cCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence            456777788888888888888999999999865   46788999999999999999999888899999999999999999


Q ss_pred             ecccCCcccccCcCcccccc
Q psy12695        124 QKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       124 ~~~~~~~f~~l~~l~~~~~~  143 (369)
                      +.++.. |..++.|...++.
T Consensus       254 ~~lp~~-l~~l~~L~~L~l~  272 (332)
T 2ft3_A          254 SRVPAG-LPDLKLLQVVYLH  272 (332)
T ss_dssp             CBCCTT-GGGCTTCCEEECC
T ss_pred             eecChh-hhcCccCCEEECC
Confidence            988754 6677766554443

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.83  E-value=7.4e-09  Score=90.64  Aligned_cols=102  Identities=15%  Similarity=0.195  Sum_probs=67.8

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCe-----EeeecccccccCCcceEEEEeecceeeEEEcccCCC
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK-----IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMS  220 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~  220 (369)
                      +.+...|..+.+.+|++++|.|.+.+.|.+.+.|++++.     .+.............++.+........|.|.+++.+
T Consensus        13 ~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   92 (276)
T 3auv_A           13 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPE   92 (276)
T ss_dssp             CCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChh
Confidence            344555778889999999999999999999999998642     121111111111123555544455668999999999


Q ss_pred             CCEEEEEEEEeCCce-EEEEEEEEEeec
Q psy12695        221 DSGIYTCRAKNGAGE-VFTNISLNVIKV  247 (369)
Q Consensus       221 D~G~Y~C~a~n~~g~-~~~~~~l~v~~~  247 (369)
                      |+|.|.|.+.|..+. ....+.|.|...
T Consensus        93 DsG~Y~C~~~n~~~~~~~~~~~l~V~~~  120 (276)
T 3auv_A           93 DFATYYCQQHYTTPPTFGCGTKVEIKGG  120 (276)
T ss_dssp             GCEEEEEEECSSSSCCCCCCEEEEC---
T ss_pred             hCEEEEEEEecCCcccccCCEEEEEecC
Confidence            999999999987554 222345555543

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.83  E-value=1.8e-08  Score=85.64  Aligned_cols=100  Identities=16%  Similarity=0.243  Sum_probs=68.3

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCCCC
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD  221 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D  221 (369)
                      .+...+..+.+.+|++++|.|.+.+.|.+.+.|++++  .   .+.............++..........|.|.+++.+|
T Consensus        26 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  105 (237)
T 3sob_L           26 QMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPED  105 (237)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhh
Confidence            3444567789999999999999999999999999843  1   1111111111112335555555567789999999999


Q ss_pred             CEEEEEEEEeCCceE-EEEEEEEEee
Q psy12695        222 SGIYTCRAKNGAGEV-FTNISLNVIK  246 (369)
Q Consensus       222 ~G~Y~C~a~n~~g~~-~~~~~l~v~~  246 (369)
                      +|.|.|.+.|..+.. .....+.|..
T Consensus       106 ~G~Y~C~~~~~~~~~~~~~~~l~V~~  131 (237)
T 3sob_L          106 FATYYCQQSYTTPPTFGQGTKVEIKR  131 (237)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEEC
T ss_pred             CeEEEEeeccCCceEEcCcEEEEEec
Confidence            999999998877542 2334566644

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=98.83  E-value=1.2e-08  Score=82.96  Aligned_cols=91  Identities=15%  Similarity=0.292  Sum_probs=64.6

Q ss_pred             CeeeccCCeEEEEEEeeC--CCCCeEEEEeCCeEeeeccccc-ccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        154 DVTAEENENVTLSCRATG--SPVPKIKWIFKEKIIANISSGL-ANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g--~p~p~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      .+.+.+|+.+.|.|...+  .+.+.|.|++++..+....... ......++.+   ...+.|.|.+++.+|+|.|.|.+.
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~---~~~gsL~I~~v~~~D~G~Y~C~~~   81 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEI---LANGDLKIKNLTRDDSGTYNVTVY   81 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEE---CTTSCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEE---CCCCcEEEcccccccCEEEEEEEE
Confidence            366789999999996543  6667899999987654221111 0111233333   234569999999999999999999


Q ss_pred             eCCceE--EEEEEEEEeec
Q psy12695        231 NGAGEV--FTNISLNVIKV  247 (369)
Q Consensus       231 n~~g~~--~~~~~l~v~~~  247 (369)
                      |..|..  ...+.|.|...
T Consensus        82 n~~g~~~~~~~~~l~V~~~  100 (176)
T 1hng_A           82 STNGTRILNKALDLRILEM  100 (176)
T ss_dssp             ETTCCEEEEEEEEEEEECC
T ss_pred             eCCCCEEEEEEEEEEEeCC
Confidence            999986  66778888764

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=98.82  E-value=4.3e-09  Score=87.85  Aligned_cols=83  Identities=25%  Similarity=0.346  Sum_probs=64.6

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCe-EEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPK-IKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |.+...+....+.+|+.++|.|.+.+.|.+. +.|++++..+..                   ..+.|.|.+++.+|+|.
T Consensus         8 p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~-------------------~~~~L~i~~v~~~D~G~   68 (204)
T 3sgj_C            8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISS-------------------QASSYFIDAATVDDSGE   68 (204)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESC-------------------CSSEEEESSCCGGGCEE
T ss_pred             CeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEccc-------------------CccEEEEecccccCCEE
Confidence            3444456668899999999999999998876 999999876542                   12689999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      |.|.+.|..  .+..+.|.|...+.
T Consensus        69 Y~C~a~n~~--~s~~~~l~V~~~p~   91 (204)
T 3sgj_C           69 YRCQTQLST--LSDPVQLEVHIGWL   91 (204)
T ss_dssp             EEEEETTSB--CCCCEEEEEECSSE
T ss_pred             EEEEeCCCc--ccccEEEEEecCce
Confidence            999998853  34456677765543

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=98.82  E-value=4.1e-09  Score=85.35  Aligned_cols=90  Identities=19%  Similarity=0.216  Sum_probs=64.2

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeeccccccc-C--CcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLAN-M--NKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      .+.+.+|++++|.|.+.+ |.+.|.|++++..+......... .  -+.+..  .....+.|.|.+++.+|+|.|.|.+.
T Consensus         4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~--~~~~~~sL~I~~v~~~DsG~Y~C~~~   80 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVY--LDTVSGSLTIYNLTSSDEDEYEMESP   80 (171)
T ss_dssp             EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEE--ECTTTCCEEECSCCGGGCEEEEEECT
T ss_pred             EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEE--EeCCCCeEEECCCChhhCceEEEEEe
Confidence            467899999999999854 88899999988754432211000 0  011222  22345789999999999999999999


Q ss_pred             eCCceEEEEEEEEEeecC
Q psy12695        231 NGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       231 n~~g~~~~~~~l~v~~~~  248 (369)
                      |..|  ...+.|.|..++
T Consensus        81 n~~~--~~~~~L~V~~~~   96 (171)
T 1ccz_A           81 NITD--TMKFFLYVLEMV   96 (171)
T ss_dssp             TCCS--CEEEEEEEECCC
T ss_pred             CCCC--cEEEEEEEECcC
Confidence            9888  667788887653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.81  E-value=8e-09  Score=97.11  Aligned_cols=96  Identities=22%  Similarity=0.315  Sum_probs=65.9

Q ss_pred             ceEEEecCCCCCccCC-CC--CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPE-QL--DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG  120 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~-~~--~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  120 (369)
                      .+.++.+++.+..++. .+  ...++.|+|++|+|.   +.+|.++++|+.|+|++|+|+.+++..|..+++|+.|+|++
T Consensus       277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  356 (455)
T 3v47_A          277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY  356 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred             ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence            4567777777775433 23  246777777777754   45677777777777777777777777777777777777777


Q ss_pred             cceecccCCcccccCcCccccc
Q psy12695        121 NPIQKITHEAFINVPKLNLEDF  142 (369)
Q Consensus       121 N~l~~~~~~~f~~l~~l~~~~~  142 (369)
                      |.|+.+.+..|..+++|...++
T Consensus       357 N~l~~~~~~~~~~l~~L~~L~L  378 (455)
T 3v47_A          357 NHIRALGDQSFLGLPNLKELAL  378 (455)
T ss_dssp             SCCCEECTTTTTTCTTCCEEEC
T ss_pred             CcccccChhhccccccccEEEC
Confidence            7777776667776666555443

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.81  E-value=3.6e-09  Score=91.61  Aligned_cols=102  Identities=16%  Similarity=0.257  Sum_probs=56.8

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---Eeeecc--ccc----ccCCcceEE-EEeecceeeEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANIS--SGL----ANMNKRQYI-IKTINSLSNLT  213 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~--~~~----~~~~~~~~~-~~~~~~~~~L~  213 (369)
                      |.+...+..+.+.+|++++|.|.+.+.+.+.+.|++..  .   .+....  ...    .....+++. .........|.
T Consensus         3 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (259)
T 3omz_A            3 SNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMI   82 (259)
T ss_dssp             --------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEE
T ss_pred             cccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEE
Confidence            44556678899999999999999999999999999832  1   111111  000    001111221 12233456799


Q ss_pred             EcccCCCCCEEEEEEEEeCCc---eEEEEEEEEEeec
Q psy12695        214 IVAVTMSDSGIYTCRAKNGAG---EVFTNISLNVIKV  247 (369)
Q Consensus       214 I~~v~~~D~G~Y~C~a~n~~g---~~~~~~~l~v~~~  247 (369)
                      |.+++.+|+|.|.|.+.|..+   .......|.|...
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~  119 (259)
T 3omz_A           83 LRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDK  119 (259)
T ss_dssp             ESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC-
T ss_pred             ECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecC
Confidence            999999999999999999876   3344466777653

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=98.81  E-value=1.4e-08  Score=93.60  Aligned_cols=89  Identities=29%  Similarity=0.393  Sum_probs=71.5

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ...+.+|+.+.|.|.+.|.|.|.+.|++++..+....        .    ......+.|.|.+++.+|+|.|+|.|.|..
T Consensus       231 ~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~--------~----~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  298 (404)
T 3p3y_A          231 SQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDK--------A----KFENFNKALRITNVSEEDSGEYFCLASNKM  298 (404)
T ss_dssp             EEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTT--------E----EEEGGGTEEEESSCCGGGCEEEEEEEECSS
T ss_pred             CceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCc--------c----cccccCceEEEccCCHhHCEEEEEEEEeCC
Confidence            3568899999999999999999999999987654211        1    112235689999999999999999999999


Q ss_pred             ceEEEEEEEEEeecCCcccCC
Q psy12695        234 GEVFTNISLNVIKVETAVAQP  254 (369)
Q Consensus       234 g~~~~~~~l~v~~~~~~~~~~  254 (369)
                      |.....+.|.|...+.....+
T Consensus       299 g~~~~~~~l~V~~~p~~~~~~  319 (404)
T 3p3y_A          299 GSIRHTISVRVKAAPYWLDEP  319 (404)
T ss_dssp             CEEEEEEEEEEEEEEEEEECC
T ss_pred             CcEEEEEEEEEeCCCeeeccC
Confidence            999999999998776544433

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.81  E-value=1e-08  Score=87.51  Aligned_cols=99  Identities=18%  Similarity=0.205  Sum_probs=68.1

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeCCC----CCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCC
Q psy12695        149 RPITPDVTAEENENVTLSCRATGSP----VPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM  219 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g~p----~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~  219 (369)
                      ...|..+.+.+|+.++|.|.+.+.|    .+.+.|+++.  .   .+.............++.+........|.|.+++.
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   84 (240)
T 1moe_A            5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEA   84 (240)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCCh
Confidence            3456778899999999999999998    7889999853  1   11111110011112355554445566899999999


Q ss_pred             CCCEEEEEEEEeCCce-EEEEEEEEEeec
Q psy12695        220 SDSGIYTCRAKNGAGE-VFTNISLNVIKV  247 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~g~-~~~~~~l~v~~~  247 (369)
                      +|+|.|.|.+.|..+. ....+.|.|...
T Consensus        85 ~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~  113 (240)
T 1moe_A           85 DDVATYYCQQTNEDPYTFGGGTKLEIKGG  113 (240)
T ss_dssp             GGCEEEEEEECSSSSCCBCCCEEEEECCC
T ss_pred             hhCEEEEEEEccCCceeecCCEEEEEecC
Confidence            9999999999998654 334456777654

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.81  E-value=7.1e-09  Score=86.29  Aligned_cols=80  Identities=24%  Similarity=0.392  Sum_probs=60.8

Q ss_pred             eccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceE
Q psy12695        157 AEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV  236 (369)
Q Consensus       157 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~  236 (369)
                      +.+|+.+.|.|.+.+.| |.+.|++++..+....         ++.  .....+.|.|.++..+|+|.|+|.|.|..|..
T Consensus       122 ~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~---------~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  189 (208)
T 3r4d_A          122 VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTE---------RMT--LSQNNSILRIDPIKREDAGEYQCEISNPVSVR  189 (208)
T ss_dssp             CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCS---------SEE--EETTTTEEEESSCCGGGCEEEEEEEECTTCCE
T ss_pred             EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCC---------CeE--EcCCCCEEEEeccCHHhCeEEEEEEecCCCcc
Confidence            88999999999999976 7999999987764211         111  22334689999999999999999999999985


Q ss_pred             E-EEEEEEEeecC
Q psy12695        237 F-TNISLNVIKVE  248 (369)
Q Consensus       237 ~-~~~~l~v~~~~  248 (369)
                      . ..+.|.|..++
T Consensus       190 ~s~~~~l~v~~~~  202 (208)
T 3r4d_A          190 RSNSIKLDIIFDP  202 (208)
T ss_dssp             ECCCEEECCC---
T ss_pred             cCCceeeeEEeCC
Confidence            4 44777766554

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=98.80  E-value=3e-08  Score=75.07  Aligned_cols=95  Identities=22%  Similarity=0.311  Sum_probs=62.5

Q ss_pred             CCeeeccCCeEEEEEEeeCCC---CCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        153 PDVTAEENENVTLSCRATGSP---VPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p---~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      ..+.+.+|++++|.|.+.+.+   .+.+.|+++.  .   .+.............++..........|.|.+++.+|+|.
T Consensus         8 ~~~~~~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~~DsG~   87 (120)
T 1oaq_L            8 SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAI   87 (120)
T ss_dssp             SEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEE
T ss_pred             CcEEEcCCCCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEecCCCeEEEEECCCChhhCeE
Confidence            348899999999999998765   5679999843  1   1211111111111345655545556789999999999999


Q ss_pred             EEEEEEeCCceEE-EEEEEEEeec
Q psy12695        225 YTCRAKNGAGEVF-TNISLNVIKV  247 (369)
Q Consensus       225 Y~C~a~n~~g~~~-~~~~l~v~~~  247 (369)
                      |.|.+.+..+... ....|.|...
T Consensus        88 Y~C~~~~~~~~~fg~gt~L~V~~~  111 (120)
T 1oaq_L           88 YFCALWYSNHLVFGGGTKLTVLGQ  111 (120)
T ss_dssp             EEEEEEETTEEEECCCEEEEECC-
T ss_pred             EEEEEccCCCcEECCCEEEEEcCC
Confidence            9999988754322 2246666544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.80  E-value=6.6e-09  Score=100.52  Aligned_cols=95  Identities=23%  Similarity=0.255  Sum_probs=81.4

Q ss_pred             CceEEEecCCCCCccCC-CC--CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPE-QL--DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLS  119 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~-~~--~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  119 (369)
                      ..+.++.+++.++.+|. .+  ...+++|+|++|+|.   +.+|.++++|++|||++|+|+.||..   .+++|+.|+|+
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls  129 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLS  129 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEECC
T ss_pred             CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEECC
Confidence            35789999999998884 34  357999999999954   78899999999999999999999886   78999999999


Q ss_pred             ccceeccc-CCcccccCcCcccccc
Q psy12695        120 GNPIQKIT-HEAFINVPKLNLEDFA  143 (369)
Q Consensus       120 ~N~l~~~~-~~~f~~l~~l~~~~~~  143 (369)
                      +|.|+.++ +..|.++++|...++.
T Consensus       130 ~N~l~~l~~p~~~~~l~~L~~L~L~  154 (562)
T 3a79_B          130 FNDFDVLPVCKEFGNLTKLTFLGLS  154 (562)
T ss_dssp             SSCCSBCCCCGGGGGCTTCCEEEEE
T ss_pred             CCCccccCchHhhcccCcccEEecC
Confidence            99999987 4788888887765544

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.80  E-value=5.4e-09  Score=87.19  Aligned_cols=101  Identities=25%  Similarity=0.431  Sum_probs=69.7

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecc--eeeEEEcccCCCCC
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS--LSNLTIVAVTMSDS  222 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~I~~v~~~D~  222 (369)
                      +|.+...+..+.+.+|+.+.|.|.+.|.|.+.+.|++++..+.......    ...........  ...+.|.+++.+|+
T Consensus         9 pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~   84 (212)
T 2v9r_A            9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDP----RSHRMLLPSGSLFFLRIVHGRKSRPDE   84 (212)
T ss_dssp             EEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCT----TCSEEECTTSCEEESSCCCCSSCCCSC
T ss_pred             CcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeecccccc----ccceEEecCCcEEEEEEEecCCCcccC
Confidence            3556667788999999999999999999999999999987765322110    00000000000  12355567799999


Q ss_pred             EEEEEEEEeCCceE-EEEEEEEEeecCC
Q psy12695        223 GIYTCRAKNGAGEV-FTNISLNVIKVET  249 (369)
Q Consensus       223 G~Y~C~a~n~~g~~-~~~~~l~v~~~~~  249 (369)
                      |.|.|.+.|..|.. ...+.+.|...+.
T Consensus        85 G~Y~C~~~n~~g~~~~~~~~l~V~~~~~  112 (212)
T 2v9r_A           85 GVYVCVARNYLGEAVSHDASLEVAILRD  112 (212)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEECEECS
T ss_pred             eEEEEEEECCCCceeecceEEEEEeccc
Confidence            99999999998875 4467777765443

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=98.80  E-value=9e-09  Score=85.54  Aligned_cols=103  Identities=22%  Similarity=0.383  Sum_probs=71.4

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeeccc--ccc-cCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISS--GLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      .+...+..+.+.+|+.+.|.|.+.|.|.+.+.|++++..+.....  ... .....++...    ...|.|.+++.+|+|
T Consensus         6 ~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~----~~~L~i~~~~~~d~G   81 (209)
T 1nbq_A            6 TVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL----PTGITFKSVTREDTG   81 (209)
T ss_dssp             EEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE----TTEEECSCCCTTSCS
T ss_pred             EEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEee----ccEEEEeeCCHHHCc
Confidence            344567788899999999999999999999999997754321100  000 0011122211    268999999999999


Q ss_pred             EEEEEEEeCCc--eEEEEEEEEEeecCCcccC
Q psy12695        224 IYTCRAKNGAG--EVFTNISLNVIKVETAVAQ  253 (369)
Q Consensus       224 ~Y~C~a~n~~g--~~~~~~~l~v~~~~~~~~~  253 (369)
                      .|.|.+.|..|  .....+.|.|...+.....
T Consensus        82 ~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~  113 (209)
T 1nbq_A           82 TYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTV  113 (209)
T ss_dssp             EEEEEEEETTSSCEECCEEECCEEBCCCCCCC
T ss_pred             EEEEEEecCCCCccceEEEEEEEecCCcCCCc
Confidence            99999999865  4456677778776654433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.80  E-value=7.9e-09  Score=95.19  Aligned_cols=96  Identities=20%  Similarity=0.232  Sum_probs=80.5

Q ss_pred             ceEEEecCCCCCccCCC-C--CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQ-L--DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG  120 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~-~--~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  120 (369)
                      .+.++.+++.++.+|.. +  ...++.|+|++|+|.   +.+|.++++|+.|+|++|+|+.+++..|..+++|+.|+|++
T Consensus        71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~  150 (390)
T 3o6n_A           71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN  150 (390)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCC
Confidence            56789999999888753 3  357899999999955   56789999999999999999999998899999999999999


Q ss_pred             cceecccCCcccccCcCccccc
Q psy12695        121 NPIQKITHEAFINVPKLNLEDF  142 (369)
Q Consensus       121 N~l~~~~~~~f~~l~~l~~~~~  142 (369)
                      |.++.+++..|..+++|...++
T Consensus       151 n~l~~~~~~~~~~l~~L~~L~l  172 (390)
T 3o6n_A          151 NNLERIEDDTFQATTSLQNLQL  172 (390)
T ss_dssp             SCCCBCCTTTTSSCTTCCEEEC
T ss_pred             CccCccChhhccCCCCCCEEEC
Confidence            9999998888888877665444

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.80  E-value=1.2e-08  Score=87.06  Aligned_cols=87  Identities=21%  Similarity=0.277  Sum_probs=59.4

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCe-----EeeecccccccCCcceEEEE--eecceeeEEEcccCC
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK-----IIANISSGLANMNKRQYIIK--TINSLSNLTIVAVTM  219 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~v~~  219 (369)
                      .+...+..+.+.+|+.++|.|.+.|.|.|.+.|++++.     .+.............++.+.  .......|.|.+++.
T Consensus       129 ~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  208 (238)
T 2p1y_A          129 QVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQP  208 (238)
T ss_dssp             CCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCG
T ss_pred             eEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCH
Confidence            34444667789999999999999999999999999641     11111100000112233332  123356899999999


Q ss_pred             CCCEEEEEEEEeCC
Q psy12695        220 SDSGIYTCRAKNGA  233 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~  233 (369)
                      +|+|.|+|.|.|..
T Consensus       209 ~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          209 GDSATYFCAAIDTN  222 (238)
T ss_dssp             GGCEEEEEEEEETT
T ss_pred             HHCEEEEEEEeeCC
Confidence            99999999999984

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.80  E-value=1.4e-08  Score=83.90  Aligned_cols=95  Identities=20%  Similarity=0.285  Sum_probs=67.9

Q ss_pred             CCCCeeeccCCeEEEEEEeeC-CCCCeEEEEeCCeEeeecccccc------cCC---cceEEEEeecceeeEEEcccCCC
Q psy12695        151 ITPDVTAEENENVTLSCRATG-SPVPKIKWIFKEKIIANISSGLA------NMN---KRQYIIKTINSLSNLTIVAVTMS  220 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~~~L~I~~v~~~  220 (369)
                      .|..+.+.+|++++|.|.+.+ .+.+.|.|++++..+........      ...   ..++.+.   ..+.|.|.+++.+
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~   80 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT---QSYSLQLSNLKME   80 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC---TTCCEEECSCCGG
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC---CCeEEEECCCCcc
Confidence            356788999999999999975 55578999998765432111000      000   0122221   3578999999999


Q ss_pred             CCEEEEEEEEeCCceEEEEEEEEEeecC
Q psy12695        221 DSGIYTCRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       221 D~G~Y~C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      |+|.|.|.+.|..|.....+.|.|...+
T Consensus        81 D~G~Y~C~~~~~~~~~~~~~~L~V~~~~  108 (193)
T 2if7_A           81 DTGSYRAQISTKTSAKLSSYTLRILRQL  108 (193)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred             cCceEEEEEEecCCCeEEEEEEEEEccC
Confidence            9999999999999887778888887654

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=98.80  E-value=6.7e-09  Score=84.20  Aligned_cols=81  Identities=26%  Similarity=0.368  Sum_probs=63.9

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCe-EEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPK-IKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |.+...+....+.+|+.+.|.|.+.+.|.+. +.|++++..+..                   ..+.|.|.+++.+|+|.
T Consensus         8 p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~-------------------~~~~L~i~~~~~~d~G~   68 (175)
T 1fnl_A            8 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS-------------------QASSYFIDAATVNDSGE   68 (175)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES-------------------SCSEEEESSCCGGGCEE
T ss_pred             CEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC-------------------CceEEEEeCCCcccCEE
Confidence            4444556677899999999999999998877 889999876642                   24589999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeec
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKV  247 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~  247 (369)
                      |.|.+.|..+.  ..+.+.|...
T Consensus        69 Y~C~~~n~~~s--~~~~l~V~~~   89 (175)
T 1fnl_A           69 YRCQTNLSTLS--DPVQLEVHIG   89 (175)
T ss_dssp             EEEECSSSCCC--CCEEEEEECS
T ss_pred             EEEEeeCCccc--ccEEEEEeCC
Confidence            99999986653  4456666543

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=98.80  E-value=1.1e-08  Score=98.15  Aligned_cols=84  Identities=18%  Similarity=0.298  Sum_probs=68.6

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      .+.+.+|+.+.|.|.+.|.|.|.|.|++++..+......             ......|.|.+++.+|+|.|+|.|.|..
T Consensus       335 ~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~-------------~~~~~~L~I~~v~~~D~G~YtC~A~N~~  401 (527)
T 3qs9_E          335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG-------------LDNGYSISKFCNHKHQPGEYIFHAENDD  401 (527)
T ss_dssp             EECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCB-------------CSSSSEEEEECCCTTCCSCEEEEEEETT
T ss_pred             cEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCccc-------------ccCCcEEEEecCCcccCEEEEEEEEeCC
Confidence            467889999999999999999999999999887532210             1134579999999999999999999999


Q ss_pred             ceEEEEEEEEEeecCCc
Q psy12695        234 GEVFTNISLNVIKVETA  250 (369)
Q Consensus       234 g~~~~~~~l~v~~~~~~  250 (369)
                      |.....+.|.|..+|..
T Consensus       402 g~~~~~~~L~V~~~P~i  418 (527)
T 3qs9_E          402 AQFTKMFTLNIRRKPQV  418 (527)
T ss_dssp             EEEEEEEEEC--CCCEE
T ss_pred             CcEEEEEEEEEecCCeE
Confidence            99999999999877644

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=98.80  E-value=1.7e-08  Score=99.16  Aligned_cols=76  Identities=24%  Similarity=0.385  Sum_probs=66.2

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+..                    ...|.|.++..+|+|.|+|.|.
T Consensus       565 ~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~--------------------~~~L~i~~~~~~d~G~Y~C~a~  624 (642)
T 1e07_A          565 SPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQH--------------------TQVLFIAKITPNNNGTYACFVS  624 (642)
T ss_pred             cCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECcc--------------------CceEEECcccccCCeEEEEEEE
Confidence            45677889999999999999999999999999876531                    3479999999999999999999


Q ss_pred             eCCceEEEEEEEEEee
Q psy12695        231 NGAGEVFTNISLNVIK  246 (369)
Q Consensus       231 n~~g~~~~~~~l~v~~  246 (369)
                      |..|.....+.|.|..
T Consensus       625 N~~G~~~~s~~l~V~v  640 (642)
T 1e07_A          625 NLATGRNNSIVKSITV  640 (642)
T ss_pred             ecccCcceeEEEEEEE
Confidence            9999988888887764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.79  E-value=8.9e-09  Score=85.38  Aligned_cols=97  Identities=15%  Similarity=0.129  Sum_probs=81.3

Q ss_pred             CceEEEecCCCCCccCCCC--CCCccEEEeecceeC-hhhccCCcccCeeeccCCcccccCCcccccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLD-RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP  122 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~  122 (369)
                      ..+.+++++++++.+| .+  ..+++.|+|++|.+. ...|.++++|++|+|++|+|+...+..|..+++|+.|+|++|.
T Consensus        45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  123 (197)
T 4ezg_A           45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA  123 (197)
T ss_dssp             TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB
T ss_pred             CccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc
Confidence            3578999999999888 44  467999999999976 3478899999999999999998667789999999999999999


Q ss_pred             eecccCCcccccCcCcccccc
Q psy12695        123 IQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       123 l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      ++......|..+++|...++.
T Consensus       124 i~~~~~~~l~~l~~L~~L~L~  144 (197)
T 4ezg_A          124 HDDSILTKINTLPKVNSIDLS  144 (197)
T ss_dssp             CBGGGHHHHTTCSSCCEEECC
T ss_pred             cCcHhHHHHhhCCCCCEEEcc
Confidence            998666778888877766554

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=98.79  E-value=1.5e-08  Score=75.13  Aligned_cols=92  Identities=20%  Similarity=0.186  Sum_probs=59.2

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC---eEEEEeCCeE-------eeecccccc-cCCcceEEEEe--ecceeeEEEcccCCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVP---KIKWIFKEKI-------IANISSGLA-NMNKRQYIIKT--INSLSNLTIVAVTMS  220 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p---~i~W~~~~~~-------~~~~~~~~~-~~~~~~~~~~~--~~~~~~L~I~~v~~~  220 (369)
                      .+.+.+|++++|.|.+.+.+.+   .+.|+++...       +........ .....++.+..  ..+...|.|.+++.+
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~   82 (109)
T 2oyp_A            3 GYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLD   82 (109)
T ss_dssp             EEEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCGG
T ss_pred             CEEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCCh
Confidence            4678999999999999776533   4999996521       111110000 01122333221  223468999999999


Q ss_pred             CCEEEEEEEEeCCceEEEEEEEEEe
Q psy12695        221 DSGIYTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       221 D~G~Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      |+|.|.|.+.+..+.....+.|.|.
T Consensus        83 D~G~Y~C~v~~~~~~~~~~~~l~V~  107 (109)
T 2oyp_A           83 DHGTYCCRIQFPGLMNDKKLELKLD  107 (109)
T ss_dssp             GCEEEEEEECCSSTTCCEEEEEEEE
T ss_pred             hCeEEEEEEEcCCcccceEEEEEEE
Confidence            9999999999887665556666654

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=98.79  E-value=8.1e-09  Score=76.70  Aligned_cols=75  Identities=17%  Similarity=0.258  Sum_probs=51.8

Q ss_pred             eeeccCCeEEEEEEeeCCCCC-----eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEE
Q psy12695        155 VTAEENENVTLSCRATGSPVP-----KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA  229 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p-----~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  229 (369)
                      ..+.+|+.++|.|.+.+.+..     .+.|++++..+..                 ......|.|.+++.+|+|.|.|.+
T Consensus        17 ~~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~-----------------~~~~~~l~i~~v~~~dsG~Y~C~~   79 (108)
T 4hwn_A           17 AEPQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQS-----------------RGLSSEFQIPTASEDHSGSYWCEA   79 (108)
T ss_dssp             SSCBTTCCEEEEEEC---------CCEEEEEETTEEEEE-----------------EESCCEEEESSCCGGGCEEEEEEE
T ss_pred             CcCCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccC-----------------CCcccEEEeCccCcccCeEEEEEE
Confidence            357899999999999766554     4999999976541                 112467999999999999999999


Q ss_pred             EeCCce---EEEEEEEEEee
Q psy12695        230 KNGAGE---VFTNISLNVIK  246 (369)
Q Consensus       230 ~n~~g~---~~~~~~l~v~~  246 (369)
                      .+..|.   .+..+.|.|..
T Consensus        80 ~~~~~~~~~~S~~l~L~V~g   99 (108)
T 4hwn_A           80 ATEDNQVWKQSPQLEIRVQG   99 (108)
T ss_dssp             ECTTSSSEEECCCEEECCBC
T ss_pred             EeCCCceeccCCCEEEEEEe
Confidence            987652   23334554443

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=98.79  E-value=5.8e-09  Score=90.56  Aligned_cols=73  Identities=30%  Similarity=0.484  Sum_probs=60.1

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      +.+..+.+|+.+.|.|.+.|.|.|.+.|++++.....                    .+.+.  .++.+|+|.|+|.|.|
T Consensus       192 p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~--------------------~g~~~--~v~~~d~G~Y~C~a~N  249 (265)
T 2oz4_A          192 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP--------------------IGESV--TVTRDLEGTYLCRARS  249 (265)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECC--------------------TTSCE--ECCGGGCEEEEEEEEE
T ss_pred             CCccEEcCCCeEEEEeECccCCCCeEEEEECCcccCC--------------------CCcEE--EeehhhCeEEEEEEEC
Confidence            4567889999999999999999999999999872211                    11222  3778999999999999


Q ss_pred             CCceEEEEEEEEEee
Q psy12695        232 GAGEVFTNISLNVIK  246 (369)
Q Consensus       232 ~~g~~~~~~~l~v~~  246 (369)
                      ..|.....+.|.|..
T Consensus       250 ~~G~~~~~~~l~V~~  264 (265)
T 2oz4_A          250 TQGEVTREVTVNVLS  264 (265)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEec
Confidence            999999999998864

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.79  E-value=3.7e-08  Score=84.99  Aligned_cols=98  Identities=15%  Similarity=0.267  Sum_probs=65.2

Q ss_pred             CCCCeeeccCCeEEEEEEeeCC--CCCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        151 ITPDVTAEENENVTLSCRATGS--PVPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~--p~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      .+..+.+.+|++++|.|.+.+.  +.+.+.|+++.  .   .+.............++..........|.|.+++.+|+|
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG   87 (256)
T 3ux9_B            8 QPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEA   87 (256)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             cCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCE
Confidence            3456889999999999999887  78899999853  1   111111111111223555555555678999999999999


Q ss_pred             EEEEEEEeCCce---EEEEEEEEEeecC
Q psy12695        224 IYTCRAKNGAGE---VFTNISLNVIKVE  248 (369)
Q Consensus       224 ~Y~C~a~n~~g~---~~~~~~l~v~~~~  248 (369)
                      .|.|.+.|..+.   ....+.|.|...+
T Consensus        88 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~  115 (256)
T 3ux9_B           88 DYYCQVRDNNENEWVFGGGTKLTVLGSG  115 (256)
T ss_dssp             EEEEEEEETTTTEEEECCCEEEEEC---
T ss_pred             EEEEEEEECCCCceEECCCEEEEEECCC
Confidence            999999997542   2234566666543

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=98.78  E-value=8.5e-09  Score=92.38  Aligned_cols=83  Identities=18%  Similarity=0.281  Sum_probs=66.7

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCe-EEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEc-ccCCCCCEEEEEEE
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPK-IKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIV-AVTMSDSGIYTCRA  229 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~-~v~~~D~G~Y~C~a  229 (369)
                      +....+.+|+.+.|.|.+.|.|.|. +.|++++..+...           ..    ...+.|.|. ++..+|+|.|+|.|
T Consensus       239 ~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~-----------~~----~~~~~L~i~~~v~~~d~G~Y~C~a  303 (331)
T 3u83_A          239 FDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG-----------VE----AQNRTLFFKGPINYSLAGTYICEA  303 (331)
T ss_dssp             CCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT-----------EE----EETTEEEECSCCCGGGCEEEEEEE
T ss_pred             CCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCccccc-----------ce----ecCcEEEEeCCCccccCeEEEEEE
Confidence            3455688999999999999999998 9999998765321           00    124579999 89999999999999


Q ss_pred             EeCCceEEEEEEEEEeecCC
Q psy12695        230 KNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       230 ~n~~g~~~~~~~l~v~~~~~  249 (369)
                      .|..|.....+.|.|...+.
T Consensus       304 ~N~~G~~~~~~~l~V~~~~~  323 (331)
T 3u83_A          304 TNPIGTRSGQVEVNITEAAA  323 (331)
T ss_dssp             EETTEEEEEEEEECCBC---
T ss_pred             EeccccceEEEEEEEeccch
Confidence            99999999999998877653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.78  E-value=3.9e-09  Score=104.99  Aligned_cols=93  Identities=24%  Similarity=0.217  Sum_probs=77.2

Q ss_pred             ceEEEecCCCCCccCCCCC--CCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCcccccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQLD--VGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP  122 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~~--~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~  122 (369)
                      .+.++++++.+..+|..+.  ..++.|+|++|.|.  +..|.+|++|+.|||++|+|+.||. .|..|.+|+.|+|++|.
T Consensus       226 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~  304 (727)
T 4b8c_D          226 WHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA-ELGSCFQLKYFYFFDNM  304 (727)
T ss_dssp             CCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCS-SGGGGTTCSEEECCSSC
T ss_pred             CcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccCh-hhcCCCCCCEEECCCCC
Confidence            5689999999999987763  56899999999976  5678899999999999999998855 58889999999999999


Q ss_pred             eecccCCcccccCcCcccc
Q psy12695        123 IQKITHEAFINVPKLNLED  141 (369)
Q Consensus       123 l~~~~~~~f~~l~~l~~~~  141 (369)
                      |+.++.. |..+++|...+
T Consensus       305 l~~lp~~-~~~l~~L~~L~  322 (727)
T 4b8c_D          305 VTTLPWE-FGNLCNLQFLG  322 (727)
T ss_dssp             CCCCCSS-TTSCTTCCCEE
T ss_pred             CCccChh-hhcCCCccEEe
Confidence            9988765 77777765443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.78  E-value=8.3e-09  Score=97.05  Aligned_cols=112  Identities=27%  Similarity=0.418  Sum_probs=93.7

Q ss_pred             CcCcCCCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCc
Q psy12695         29 LQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSH  105 (369)
Q Consensus        29 ~~~~~~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~  105 (369)
                      ......||..|.|...  ...++|++.+|+.+|..+|.+++.|+|++|+|.   +.+|.++++|+.|+|++|+|+.+++.
T Consensus        40 ~~~~~~Cp~~C~C~~~--~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~  117 (452)
T 3zyi_A           40 SAGPQNCPSVCSCSNQ--FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG  117 (452)
T ss_dssp             ----CCCCTTSEECSS--SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             cCCcCCCCCCCEECCC--CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChh
Confidence            3456799999999854  357999999999999999999999999999954   67888999999999999999998888


Q ss_pred             ccccccccccccccccceecccCCcccccCcCccccc
Q psy12695        106 ILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDF  142 (369)
Q Consensus       106 ~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~  142 (369)
                      +|.++++|+.|+|++|.|+.++++.|..+++|...++
T Consensus       118 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A          118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             hccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            8888889999999999888888888887777655443

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.78  E-value=1.5e-08  Score=93.10  Aligned_cols=96  Identities=19%  Similarity=0.302  Sum_probs=72.2

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..+.......       +..........|.|.+++.+|+|.|.|.|.|
T Consensus       219 ~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~-------~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n  291 (395)
T 1bih_A          219 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDR-------ITRHNRTSGKRLLFKTTLPEDEGVYTCEVDN  291 (395)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSS-------EESCSSSTTSEEEESSCCGGGCEEEEEEECC
T ss_pred             CCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCcee-------EEEEecCCCceEEEccCChhhCEEEEEEEEe
Confidence            356778999999999999999999999999997765322211       1111112234799999999999999999999


Q ss_pred             CCceEEE-EEEEEEeecCCcccCC
Q psy12695        232 GAGEVFT-NISLNVIKVETAVAQP  254 (369)
Q Consensus       232 ~~g~~~~-~~~l~v~~~~~~~~~~  254 (369)
                      ..|.... .+.|.|...|.....+
T Consensus       292 ~~g~~~~~~~~l~V~~~P~~~~~~  315 (395)
T 1bih_A          292 GVGKPQKHSLKLTVVSAPKYEQKP  315 (395)
T ss_dssp             SSSSCEEEEEEEEEEEEEEEEECC
T ss_pred             CCCCceEEEEEEEEEcCCccccCC
Confidence            9998655 8888888766544333

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.77  E-value=2.6e-08  Score=82.95  Aligned_cols=100  Identities=20%  Similarity=0.333  Sum_probs=69.0

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCC----CCeEEEEeCCe-------Eeeeccccccc-----CCcceEEEE---eecceee
Q psy12695        151 ITPDVTAEENENVTLSCRATGSP----VPKIKWIFKEK-------IIANISSGLAN-----MNKRQYIIK---TINSLSN  211 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p----~p~i~W~~~~~-------~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~  211 (369)
                      .+..+.+.+|+.+.|.|.+.+.+    .+.+.|++.+.       .+.........     .-..+....   .......
T Consensus         6 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~   85 (214)
T 3jz7_A            6 PEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDAS   85 (214)
T ss_dssp             CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCC
T ss_pred             CCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCccc
Confidence            34567899999999999999877    46899998431       11100000000     001122221   1224578


Q ss_pred             EEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCc
Q psy12695        212 LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETA  250 (369)
Q Consensus       212 L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~  250 (369)
                      |.|.+++.+|+|.|.|.+.|..|.....+.|.|...+..
T Consensus        86 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~  124 (214)
T 3jz7_A           86 INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSG  124 (214)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBS
T ss_pred             EEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCC
Confidence            999999999999999999999999888999999877643

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.77  E-value=2.6e-08  Score=83.82  Aligned_cols=88  Identities=14%  Similarity=0.213  Sum_probs=60.0

Q ss_pred             CeeeccCCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEe--ecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        154 DVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT--INSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      ...+.+|+.+.|.|.+ .|.|.|.+.|++++.......        .......  ......|.|.+++.+|+|.|+|.|.
T Consensus       119 ~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~  190 (222)
T 4i0k_A          119 NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGN--------VTTSQMANERGLFDVHSVLRVVLGANGTYSCLVR  190 (222)
T ss_dssp             -----CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSE--------EEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEE
T ss_pred             CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCC--------cceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEE
Confidence            3467889999999999 899999999998543322110        0000000  1112348899999999999999999


Q ss_pred             eCCceEEEEEEEEEeecCC
Q psy12695        231 NGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       231 n~~g~~~~~~~l~v~~~~~  249 (369)
                      |..|.....+.|.|...+.
T Consensus       191 n~~g~~~~~~~l~V~~~p~  209 (222)
T 4i0k_A          191 NPVLQQDAHGSVTITGQPL  209 (222)
T ss_dssp             ETTTTEEEEEEEECCC---
T ss_pred             CCCCCCceEEEEEEeCCcc
Confidence            9999999999999987664

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=98.77  E-value=1.2e-08  Score=84.34  Aligned_cols=89  Identities=15%  Similarity=0.143  Sum_probs=64.1

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...|. ..+.+|++++|.|.+.+.|. .+.|++++..+......          .......+.|.|.+++.+|+|.|
T Consensus         6 P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~----------~~~~~~~~~L~i~~v~~~D~G~Y   73 (196)
T 2d3v_A            6 ATLWAEPG-SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQN----------PLEPKNKARFSIPSMTEHHAGRY   73 (196)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEEC----------CCSSTTEEEEEESSCCGGGCEEE
T ss_pred             CEEEeCCC-CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCccccc----------ccCCccccEEEeccCChhHCeEE
Confidence            44444444 47899999999999998776 99999998654321100          00122457899999999999999


Q ss_pred             EEEEEeCCceE--EEEEEEEEee
Q psy12695        226 TCRAKNGAGEV--FTNISLNVIK  246 (369)
Q Consensus       226 ~C~a~n~~g~~--~~~~~l~v~~  246 (369)
                      .|.+.|..|..  +..+.|.|..
T Consensus        74 ~C~a~n~~g~~~~s~~~~l~V~~   96 (196)
T 2d3v_A           74 RCYYYSPAGWSEPSDPLELVVTG   96 (196)
T ss_dssp             EEEEEETTEECBCCCCEEEEEEC
T ss_pred             EEEEeCCCCcCCcCccEEEEecC
Confidence            99999988743  3456777765

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=98.77  E-value=9.8e-09  Score=84.03  Aligned_cols=80  Identities=20%  Similarity=0.211  Sum_probs=60.8

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+. ..+.+|++++|.|.+.+ +.+.+.|++++...                   ....+.|.|.+++.+|+|.|
T Consensus         9 P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~-------------------~~~~~~L~i~~v~~~D~G~Y   67 (184)
T 2gi7_A            9 PSLQALPS-SLVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR-------------------YQDQAVLFIPAMKRSLAGRY   67 (184)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEECST-TCSEEEEEETTTCC-------------------EESSSEEEESSCCGGGCEEE
T ss_pred             CeEEeCCC-ccccCCCcEEEEEeCCC-CCCEEEEEECCccc-------------------cCcccEEEECcCChhhCceE
Confidence            34444444 37899999999999988 78899999987541                   11356899999999999999


Q ss_pred             EEEEEeCCce--EEEEEEEEEee
Q psy12695        226 TCRAKNGAGE--VFTNISLNVIK  246 (369)
Q Consensus       226 ~C~a~n~~g~--~~~~~~l~v~~  246 (369)
                      .|.+.|..|.  .+..+.|.|..
T Consensus        68 ~C~a~n~~g~~~~s~~~~l~V~~   90 (184)
T 2gi7_A           68 RCSYQNGSLWSLPSDQLELVATG   90 (184)
T ss_dssp             EEEEEETTEEBCCCCCEEEEEES
T ss_pred             EEEEEcCCCccCCCCCEEEEecC
Confidence            9999998764  23456676644

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.77  E-value=5e-09  Score=102.12  Aligned_cols=95  Identities=24%  Similarity=0.445  Sum_probs=70.9

Q ss_pred             ceEEEecCCCCCccCCCC---CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQL---DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG  120 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~---~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  120 (369)
                      .+.+++.++.++.+|..+   ...++.|+|++|.|.   +.+|.++++|+.|+|++|.|+.+++..|.++++|+.|+|++
T Consensus        53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  132 (597)
T 3oja_B           53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER  132 (597)
T ss_dssp             CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC
Confidence            356777777777777654   246888888888854   45788888888888888888888887788888888888888


Q ss_pred             cceecccCCcccccCcCcccc
Q psy12695        121 NPIQKITHEAFINVPKLNLED  141 (369)
Q Consensus       121 N~l~~~~~~~f~~l~~l~~~~  141 (369)
                      |.|+.+++..|.++++|...+
T Consensus       133 n~l~~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B          133 NDLSSLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCCCHHHhccCCCCCEEE
Confidence            888888777777776655443

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=98.77  E-value=3e-08  Score=75.46  Aligned_cols=97  Identities=18%  Similarity=0.221  Sum_probs=61.3

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCCC---eEEEEeCCeE-----eeeccc-cccc---CCcceEEEE---eecceeeEEEc
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPVP---KIKWIFKEKI-----IANISS-GLAN---MNKRQYIIK---TINSLSNLTIV  215 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~p---~i~W~~~~~~-----~~~~~~-~~~~---~~~~~~~~~---~~~~~~~L~I~  215 (369)
                      .|..+++.+|++++|.|.+.+.+..   .|.|++....     +..... ....   .-..|+.+.   .......|.|.
T Consensus         6 ~p~~vtv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~   85 (123)
T 4gjt_B            6 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   85 (123)
T ss_dssp             CCSEEECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEE
T ss_pred             cCCEEEEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEEC
Confidence            3567889999999999999776543   4789985421     110000 0000   001122211   12234679999


Q ss_pred             ccCCCCCEEEEEEEEe-CCceEEEEEEEEEeec
Q psy12695        216 AVTMSDSGIYTCRAKN-GAGEVFTNISLNVIKV  247 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n-~~g~~~~~~~l~v~~~  247 (369)
                      +++.+|+|.|.|.+.+ ..|.....+.|.|...
T Consensus        86 ~v~~~DsG~Y~C~v~t~~~g~~~~~~~L~VlE~  118 (123)
T 4gjt_B           86 NAVQADEGEYECRVSTFPAGSFQARLRLRVLEH  118 (123)
T ss_dssp             SCCSSSCSEEEEEEEESSSCEEEEEEEEEC---
T ss_pred             CCChHHCEEEEEEEEECCCCeEEeEEEEEEEEC
Confidence            9999999999999876 5778888888888753

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.77  E-value=1.2e-08  Score=88.27  Aligned_cols=99  Identities=16%  Similarity=0.167  Sum_probs=65.4

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEe--CCeEe---eecccccccCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIF--KEKII---ANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      +...+..+.+.+|+.++|.|.+.+.|.+.+.|++  ++..+   .............++..........|.|.+++.+|+
T Consensus       142 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~  221 (257)
T 1f3r_B          142 LTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDV  221 (257)
T ss_dssp             SCEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGC
T ss_pred             EEccCCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhC
Confidence            3344567788999999999999999989999999  44322   111110001112345444444567899999999999


Q ss_pred             EEEEEEEEeCCceEEEEEEEEEee
Q psy12695        223 GIYTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       223 G~Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      |.|+|.|.|..........|.|..
T Consensus       222 G~Y~C~a~n~~~~~g~gt~l~V~~  245 (257)
T 1f3r_B          222 ATYFCYQYNNGYTFGAGTKLELKA  245 (257)
T ss_dssp             SEEEEEEESSSEEECCCCEECCSS
T ss_pred             EEEEEEEeCCCCeECCCEEEEEeC
Confidence            999999999751122234555544

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=98.77  E-value=1.9e-08  Score=74.88  Aligned_cols=90  Identities=19%  Similarity=0.196  Sum_probs=60.2

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeE-----eeeccccc--cc---CCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKI-----IANISSGL--AN---MNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~-----~~~~~~~~--~~---~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      ...+.+|+++.|.|.....+.+.+.|++....     +.......  ..   .-..|..+   ..+++|.|.+++.+|+|
T Consensus         9 p~~~~~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~---~~ngSL~I~nvt~~D~G   85 (111)
T 2qsq_A            9 PFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII---YPNASLLIQNIIQNDAG   85 (111)
T ss_dssp             SSEEETTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEE---CTTSCEEECSCCGGGCE
T ss_pred             cceeccCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEE---ecCCcEEEccCcccCCe
Confidence            35689999999999864444457999986532     11111000  00   01122222   24679999999999999


Q ss_pred             EEEEEEEeCCc-eEEEEEEEEEee
Q psy12695        224 IYTCRAKNGAG-EVFTNISLNVIK  246 (369)
Q Consensus       224 ~Y~C~a~n~~g-~~~~~~~l~v~~  246 (369)
                      .|+|.+.+..+ .....+.|.|..
T Consensus        86 ~Ytc~v~~~~~~~~~~~~~L~V~~  109 (111)
T 2qsq_A           86 FYTLHVIKSDLVNEEATGQFRVYP  109 (111)
T ss_dssp             EEEEEEEETTSCCEEEEEEEEEEC
T ss_pred             EEEEEEEeCCCcEEEEEEEEEEec
Confidence            99999999876 467788888864

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=98.77  E-value=1.7e-08  Score=74.46  Aligned_cols=74  Identities=14%  Similarity=0.296  Sum_probs=53.7

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...|.. .+.+|++|+|.|.+.+.+ ..+.|++++.......            .........|.|.+++.+|+|.|
T Consensus         6 P~i~~~p~~-~v~~G~~VtL~C~~~~~~-~~~~w~k~g~~~~~~~------------~~~~~~~~~l~I~~v~~~dsG~Y   71 (105)
T 2vsd_A            6 PSLSLHPSQ-GVSLGDTVTLRCHLPRMA-AWVQLWLNGTLRFDKE------------KDKEQDAAEFSFAVTNLEDAGTY   71 (105)
T ss_dssp             CEEEEESCS-SCCTTCEEEEEEECCSSC-EEEEEEETTEEEEEEE------------ECTTCSEEEEEEECCSGGGCEEE
T ss_pred             CEEEeCCCC-CcCcCCCEEEEEEcCCCC-cEEEEEECCccceeee------------ccCCCCEEEEEECCCCHHHCeEE
Confidence            344444444 689999999999997753 5789999987543210            01122356899999999999999


Q ss_pred             EEEEEeCC
Q psy12695        226 TCRAKNGA  233 (369)
Q Consensus       226 ~C~a~n~~  233 (369)
                      .|.+.|..
T Consensus        72 ~C~~~n~~   79 (105)
T 2vsd_A           72 QCRYQVSE   79 (105)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEcCC
Confidence            99998854

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=98.77  E-value=1.4e-08  Score=75.67  Aligned_cols=81  Identities=16%  Similarity=0.238  Sum_probs=54.8

Q ss_pred             CCCeeeccCCeEEEEEEeeCCC-CCeEEEEeCCeE-----eeecccccccCCcceEEEEe--ecceeeEEEcccCCCCCE
Q psy12695        152 TPDVTAEENENVTLSCRATGSP-VPKIKWIFKEKI-----IANISSGLANMNKRQYIIKT--INSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p-~p~i~W~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G  223 (369)
                      |..+.+.+|++++|.|.+.+.. .+.+.|+++...     +........ ....++.+..  ......|+|.+++.+|+|
T Consensus         3 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~-~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG   81 (110)
T 2q87_A            3 ARTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAG-KRNGRVSIRDSPANLSFTVTLENLTEEDAG   81 (110)
T ss_dssp             EEEEEECTTSCEEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTC-SEETTEEEEEEGGGTEEEEEESSCCGGGCE
T ss_pred             CcEEEEeCCCcEEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccc-cccCCEEEEEcCcCCEEEEEEccCCHHHCE
Confidence            3467899999999999997643 368999986421     111111000 1223444432  234568999999999999


Q ss_pred             EEEEEEEeCC
Q psy12695        224 IYTCRAKNGA  233 (369)
Q Consensus       224 ~Y~C~a~n~~  233 (369)
                      .|.|.+.+..
T Consensus        82 ~Y~C~~~~~~   91 (110)
T 2q87_A           82 TYWCGVDTPW   91 (110)
T ss_dssp             EEEEEEECTT
T ss_pred             EEEEEEecCc
Confidence            9999999875

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.77  E-value=7.6e-09  Score=88.69  Aligned_cols=89  Identities=18%  Similarity=0.309  Sum_probs=60.7

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccc---------------cCCcceEEEEeecceeeEEEcc
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLA---------------NMNKRQYIIKTINSLSNLTIVA  216 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~L~I~~  216 (369)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+........               ..-..+.   .....+.|.|.+
T Consensus       143 ~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~  219 (250)
T 2fbo_J          143 AEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRA---SFSGARNLVIRA  219 (250)
T ss_dssp             CSEEECCTTCCEEECCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSE---EEETTTEEEECS
T ss_pred             CceEEecCCCcEEEEEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEeccc---ccCCccEEEEec
Confidence            3456778899999999999999999999998765532110000               0000000   011236899999


Q ss_pred             cCCCCCEEEEEEEEe---CCceEEEEEEEE
Q psy12695        217 VTMSDSGIYTCRAKN---GAGEVFTNISLN  243 (369)
Q Consensus       217 v~~~D~G~Y~C~a~n---~~g~~~~~~~l~  243 (369)
                      ++.+|+|.|+|.|.|   ..|.....+.|.
T Consensus       220 v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l~  249 (250)
T 2fbo_J          220 AKITDAGRVWCELATGQGELDADRSSTILK  249 (250)
T ss_dssp             CCGGGCEEEEEEEESSSSGGGEEEEEEEEE
T ss_pred             CCcccCEEEEEEecCCccccCccceeEEEe
Confidence            999999999999999   445556555554

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.77  E-value=2.5e-08  Score=85.60  Aligned_cols=99  Identities=14%  Similarity=0.160  Sum_probs=66.2

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeCCC-----CCeEEEEeCC--eE---eeecccccccCCcceEEEEeecceeeEEEcccC
Q psy12695        149 RPITPDVTAEENENVTLSCRATGSP-----VPKIKWIFKE--KI---IANISSGLANMNKRQYIIKTINSLSNLTIVAVT  218 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g~p-----~p~i~W~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~  218 (369)
                      ...|..+.+.+|+.++|.|.+.+.|     .+.+.|+++.  ..   +.............++.+........|.|.+++
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   84 (247)
T 1svz_A            5 TQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVE   84 (247)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             EecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCC
Confidence            3456778999999999999999988     6889999843  11   111111000011235555444556789999999


Q ss_pred             CCCCEEEEEEEEeCCceE-EEEEEEEEeec
Q psy12695        219 MSDSGIYTCRAKNGAGEV-FTNISLNVIKV  247 (369)
Q Consensus       219 ~~D~G~Y~C~a~n~~g~~-~~~~~l~v~~~  247 (369)
                      .+|+|.|.|.+.|..+.. ...+.|.|...
T Consensus        85 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~  114 (247)
T 1svz_A           85 AEDLGIYYCFQGSHFPPTFGGGTKLEIKGG  114 (247)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEEC--
T ss_pred             HHHCEEEEEEEccCCccEECCCEEEEEECC
Confidence            999999999999886542 23356666553

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.77  E-value=6.1e-08  Score=81.43  Aligned_cols=99  Identities=18%  Similarity=0.281  Sum_probs=67.5

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCC-----CeEEEEeCCeEeeecccccc------cCCcceEEEEe---ecceeeEEEc
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPV-----PKIKWIFKEKIIANISSGLA------NMNKRQYIIKT---INSLSNLTIV  215 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~-----p~i~W~~~~~~~~~~~~~~~------~~~~~~~~~~~---~~~~~~L~I~  215 (369)
                      ..+..+.+.+|+.+.|.|.+.+.|.     +.+.|++++..+........      ..-..+..+..   ..+...|.|.
T Consensus         6 ~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~   85 (222)
T 3sbw_C            6 VPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQIT   85 (222)
T ss_dssp             CSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEES
T ss_pred             cCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEc
Confidence            3456678999999999999988774     38999998744332211100      00011222211   1234689999


Q ss_pred             ccCCCCCEEEEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        216 AVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      +++.+|+|.|.|.+.| .|.....+.|.|..++.
T Consensus        86 ~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~  118 (222)
T 3sbw_C           86 DVKLQDAGVYRCMISY-GGADYKRITVKVNAPYN  118 (222)
T ss_dssp             SCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCC
T ss_pred             CcccccCeEEEEEEEe-CCCceeEEEEEEECCCC
Confidence            9999999999999999 67777788888886543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.77  E-value=9.8e-09  Score=96.19  Aligned_cols=71  Identities=30%  Similarity=0.439  Sum_probs=42.1

Q ss_pred             CccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCcccccCcC
Q psy12695         67 GTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL  137 (369)
Q Consensus        67 ~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l  137 (369)
                      .++.|+|++|+|.   +.+|.++++|+.|+|++|+|+.+++.+|.++++|+.|+|++|+|+.++...|..+++|
T Consensus       208 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  281 (440)
T 3zyj_A          208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL  281 (440)
T ss_dssp             SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred             ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence            4555555555533   4556666666666666666666666666666666666666666666666555555543

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.76  E-value=3.3e-08  Score=84.76  Aligned_cols=98  Identities=19%  Similarity=0.238  Sum_probs=65.7

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEe--CCeEee---ecccccccCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIF--KEKIIA---NISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      +...+..+.+.+|+.++|.|.+.+.|.+.+.|++  ++..+.   ............++..........|.|.+++.+|+
T Consensus       138 ~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~  217 (247)
T 2ghw_B          138 LTQSPATLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDF  217 (247)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGC
T ss_pred             EEccCCEEEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHC
Confidence            4444567789999999999999999999999999  443221   11100001112344443344566899999999999


Q ss_pred             EEEEEEEEeCCceEE-EEEEEEEe
Q psy12695        223 GIYTCRAKNGAGEVF-TNISLNVI  245 (369)
Q Consensus       223 G~Y~C~a~n~~g~~~-~~~~l~v~  245 (369)
                      |.|.|.|.|..+... ....|.|.
T Consensus       218 G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          218 AVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEEEEccCCCceEcCCEEEEEC
Confidence            999999998654433 33456664

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=98.76  E-value=1.7e-08  Score=93.01  Aligned_cols=92  Identities=30%  Similarity=0.478  Sum_probs=72.8

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      +....+.+|+.+.|.|.+.|.|.+.+.|++++..+....        .++..   ...+.|.|.+++.+|+|.|+|.|.|
T Consensus       228 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~--------~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~n  296 (403)
T 3laf_A          228 PSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRS--------KKYSL---LGGSNLLISNVTDDDSGTYTCVVTY  296 (403)
T ss_dssp             CCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSS--------SSEEE---ETTTEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCC--------ceEEE---CCccEEEEeCCCHHHCEEEEEEEEc
Confidence            456778899999999999999999999999987664211        11111   1345799999999999999999999


Q ss_pred             CCceEEEEEEEEEeecCCcccCC
Q psy12695        232 GAGEVFTNISLNVIKVETAVAQP  254 (369)
Q Consensus       232 ~~g~~~~~~~l~v~~~~~~~~~~  254 (369)
                      ..|.....+.|.|..++.....+
T Consensus       297 ~~g~~~~~~~l~V~~~p~~~~~~  319 (403)
T 3laf_A          297 KNENISASAELTVLVPPWFLNHP  319 (403)
T ss_dssp             TTEEEEEEEEEEEEEEEEEEECC
T ss_pred             CCCceEEEEEEEEECCCcEeecC
Confidence            99999999999998766544333

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=98.76  E-value=1.6e-07  Score=71.50  Aligned_cols=99  Identities=14%  Similarity=0.176  Sum_probs=66.0

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCC-CeEEEEeCCe-----EeeecccccccCCcceEEEEe--ecceeeEEEcccCCCCC
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPV-PKIKWIFKEK-----IIANISSGLANMNKRQYIIKT--INSLSNLTIVAVTMSDS  222 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~-p~i~W~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~  222 (369)
                      .|..+.+.+|++++|.|.+.+... ..+.|+++..     .+.............++.+..  ......|+|.+++.+|+
T Consensus         8 ~p~~v~~~~G~svtL~C~~s~~~~~~~~~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~Ds   87 (124)
T 2nms_A            8 GPTTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDA   87 (124)
T ss_dssp             CCSEEEEETTCCEEEEEEECTTCTTSEEEEEESSSSTTCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             cccEEEEeCCCCEEEEeEEeCCcccccEEEEeCCCCCCceEEEEcCCcccceeCCCEEEEEcCcCCEEEEEEeCCCHHHC
Confidence            356678899999999999976543 3599998642     121111111111223454432  23456899999999999


Q ss_pred             EEEEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        223 GIYTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       223 G~Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      |.|.|.+..........+.|.|...+.
T Consensus        88 g~Y~C~~~~~~~~~~~~v~L~V~~~~~  114 (124)
T 2nms_A           88 DTYWCGIEKTGNDLGVTVQVTIDPAPV  114 (124)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEECCC-
T ss_pred             EEEEEEEEcCCCCccEEEEEEEeCCCc
Confidence            999999988765566678888876654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.76  E-value=1.1e-08  Score=99.97  Aligned_cols=96  Identities=16%  Similarity=0.123  Sum_probs=76.1

Q ss_pred             CceEEEecCCCCCccCC-CC--CCCccEEEeeccee---ChhhccCCcccCeeeccCCcccccCCccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPE-QL--DVGTQVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLS  119 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~-~~--~~~~~~L~l~~n~i---~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  119 (369)
                      ..+.++.+++.++.++. .+  -..+++|+|++|+|   .+.+|.++++|++|+|++|+|+.+++.+|.++++|+.|+|+
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  112 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV  112 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred             CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence            35678899999988776 33  24688899998884   46788888889999999888888888888888888888888


Q ss_pred             ccceecccCCcccccCcCcccc
Q psy12695        120 GNPIQKITHEAFINVPKLNLED  141 (369)
Q Consensus       120 ~N~l~~~~~~~f~~l~~l~~~~  141 (369)
                      +|.++.+++..|.++.+|...+
T Consensus       113 ~n~l~~~~~~~~~~l~~L~~L~  134 (606)
T 3vq2_A          113 ETKLASLESFPIGQLITLKKLN  134 (606)
T ss_dssp             TSCCCCSSSSCCTTCTTCCEEE
T ss_pred             CCccccccccccCCCCCCCEEe
Confidence            8888888877777777655433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.76  E-value=1.4e-08  Score=97.92  Aligned_cols=94  Identities=21%  Similarity=0.235  Sum_probs=79.5

Q ss_pred             CceEEEecCCCCCccCCCCCCCccEEEeecceeChhhccCCcccCeeeccCCcccccCCcccccccccccccccccceec
Q psy12695         46 GKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK  125 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~  125 (369)
                      ..+.+++++|+++.+|..+|..++.|+|++|+|... +.++++|++|+|++|+|+.||..  ..+++|+.|+|++|+|+.
T Consensus       411 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~-~~~l~~L~~L~Ls~N~l~~ip~~--~~l~~L~~L~Ls~N~l~~  487 (549)
T 2z81_A          411 KMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF-SLFLPRLQELYISRNKLKTLPDA--SLFPVLLVMKISRNQLKS  487 (549)
T ss_dssp             TCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCC-CCCCTTCCEEECCSSCCSSCCCG--GGCTTCCEEECCSSCCCC
T ss_pred             cccEEECCCCCcccccchhcCCceEEECCCCChhhh-cccCChhcEEECCCCccCcCCCc--ccCccCCEEecCCCccCC
Confidence            457788888888888888888899999999998753 46899999999999999999874  468899999999999999


Q ss_pred             ccCCcccccCcCccccc
Q psy12695        126 ITHEAFINVPKLNLEDF  142 (369)
Q Consensus       126 ~~~~~f~~l~~l~~~~~  142 (369)
                      +++..|..+++|...++
T Consensus       488 ~~~~~~~~l~~L~~L~l  504 (549)
T 2z81_A          488 VPDGIFDRLTSLQKIWL  504 (549)
T ss_dssp             CCTTGGGGCTTCCEEEC
T ss_pred             cCHHHHhcCcccCEEEe
Confidence            99988988887655443

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=98.76  E-value=2.8e-08  Score=96.35  Aligned_cols=109  Identities=15%  Similarity=0.181  Sum_probs=75.4

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCC---eEEEEeCCeE-----eeecccccccCCcceEEEEe--ecceeeEEEcccCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVP---KIKWIFKEKI-----IANISSGLANMNKRQYIIKT--INSLSNLTIVAVTM  219 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p---~i~W~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~  219 (369)
                      ..|.++.+.+|+.++|.|.+.+.|.+   .+.|++++..     +.............++.+..  ..+...|.|.+++.
T Consensus         5 ~~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~   84 (585)
T 2ocw_A            5 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ   84 (585)
T ss_pred             cCcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCc
Confidence            34677899999999999999988754   7999998752     21111000000112333322  23345799999999


Q ss_pred             CCCEEEEEEEEeCCceEEEEEEEEEeecCCcccCCCCce
Q psy12695        220 SDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPVY  258 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~  258 (369)
                      +|+|.|.|.+.|..|..+..+.|.|...+.....+....
T Consensus        85 ~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~~~  123 (585)
T 2ocw_A           85 DDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYT  123 (585)
T ss_pred             ccCEEEEEEcccCCCCceEEEEEEEecCccccCCCccEE
Confidence            999999999999998888889999988776544443333

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=98.76  E-value=2.4e-08  Score=74.54  Aligned_cols=77  Identities=19%  Similarity=0.297  Sum_probs=54.5

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCC--CCCeEEEEeCC--eEeeecccccccCCcceEEEEe--ecceeeEEEcccCCCCCE
Q psy12695        150 PITPDVTAEENENVTLSCRATGS--PVPKIKWIFKE--KIIANISSGLANMNKRQYIIKT--INSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~--p~p~i~W~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G  223 (369)
                      ..|..+.+.+|++++|.|.+.+.  +.+.+.|+++.  ......     .....++....  ......|.|.+++.+|+|
T Consensus         5 q~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~-----~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG   79 (111)
T 2ywz_A            5 QTPRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKT-----ISIGGRYDETVDKGSKSFSLRISDLRVEDSG   79 (111)
T ss_dssp             EECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEE-----CCSBTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             ECCCcEEEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceEe-----eEeCCCEEEEEeCCCCEEEEEECCCChhcCE
Confidence            34677889999999999999876  56789999852  111000     00122343322  234678999999999999


Q ss_pred             EEEEEEEe
Q psy12695        224 IYTCRAKN  231 (369)
Q Consensus       224 ~Y~C~a~n  231 (369)
                      .|.|.+.|
T Consensus        80 ~Y~C~~~~   87 (111)
T 2ywz_A           80 TYKCQADY   87 (111)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEc
Confidence            99999998

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.76  E-value=1.1e-08  Score=99.58  Aligned_cols=97  Identities=20%  Similarity=0.231  Sum_probs=81.4

Q ss_pred             CceEEEecCCCCCccCC-CC--CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPE-QL--DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLS  119 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~-~~--~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  119 (369)
                      ..+.++.+++.++.+|. .+  ...++.|+|++|.|.   +..|.++++|+.|+|++|.|+.+++..|..+++|+.|+|+
T Consensus        76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls  155 (597)
T 3oja_B           76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS  155 (597)
T ss_dssp             CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence            35689999999998775 33  357899999999954   6678999999999999999999999889999999999999


Q ss_pred             ccceecccCCcccccCcCccccc
Q psy12695        120 GNPIQKITHEAFINVPKLNLEDF  142 (369)
Q Consensus       120 ~N~l~~~~~~~f~~l~~l~~~~~  142 (369)
                      +|.|+.+++..|..+++|...++
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~L  178 (597)
T 3oja_B          156 NNNLERIEDDTFQATTSLQNLQL  178 (597)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCcCCCCChhhhhcCCcCcEEEC
Confidence            99999999888888887665443

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=98.75  E-value=2.2e-08  Score=74.48  Aligned_cols=92  Identities=26%  Similarity=0.344  Sum_probs=61.7

Q ss_pred             CCCeeeccCCeEEEEEEe-eCCCCCeEEEEeCCeE-eeecc--ccc--c-cCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        152 TPDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKI-IANIS--SGL--A-NMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~-~~~~~--~~~--~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +..+.+.+|++++|.|.+ .+.+.+.+.|++..+. +....  ...  . ..-..++.+.  .....|.|.+++.+|+|.
T Consensus        10 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~--~~~~sL~I~~v~~~DsG~   87 (110)
T 2ptt_A           10 IPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLE--ENNGALHISNVRKEDKGT   87 (110)
T ss_dssp             CCSEEEETTSCEEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEEC--TTTCCEEESSCCGGGCEE
T ss_pred             CCCEEEecCCcEEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEe--CCCccEEECCCCcccCeE
Confidence            356889999999999998 6777789999994322 22110  000  0 0011244332  256789999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEee
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      |.|.+.+.. .....+.|.|..
T Consensus        88 Y~C~v~~~~-~~~~~~~L~V~d  108 (110)
T 2ptt_A           88 YYMRVLRET-ENELKITLEVFD  108 (110)
T ss_dssp             EEEEEESSS-BCCEEEEEEEEC
T ss_pred             EEEEEEcCC-CcEEEEEEEEEc
Confidence            999998765 334467777764

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.75  E-value=1.6e-08  Score=87.16  Aligned_cols=103  Identities=17%  Similarity=0.220  Sum_probs=68.9

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCC----eEEEEeCC--eE---eeecccccccCCcceEEEEeecceeeEEEcc
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVP----KIKWIFKE--KI---IANISSGLANMNKRQYIIKTINSLSNLTIVA  216 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p----~i~W~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~  216 (369)
                      |.+...+..+.+.+|++++|.|.+.+.+.+    .+.|+++.  ..   +.............++..........|.|.+
T Consensus       134 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~  213 (253)
T 3uzq_A          134 LVMTQTPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINP  213 (253)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             ceEECcCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECC
Confidence            344445667889999999999999998887    89999842  21   1111111111112345555555667899999


Q ss_pred             cCCCCCEEEEEEEEeCCceEEE-EEEEEEeecC
Q psy12695        217 VTMSDSGIYTCRAKNGAGEVFT-NISLNVIKVE  248 (369)
Q Consensus       217 v~~~D~G~Y~C~a~n~~g~~~~-~~~l~v~~~~  248 (369)
                      ++.+|+|.|.|.+.|..+.... ...|.|...+
T Consensus       214 v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~~  246 (253)
T 3uzq_A          214 VEADDVATYFCQRSNEVPWTFGGGTKLEIKRPL  246 (253)
T ss_dssp             CCGGGCEEEEEEECSSSSCCBCCCEEEEECCC-
T ss_pred             CCHHHCEEEEEEEccCCCcEECCCEEEEEcCCC
Confidence            9999999999999987655433 3556665544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.75  E-value=9.6e-09  Score=99.14  Aligned_cols=84  Identities=26%  Similarity=0.202  Sum_probs=75.2

Q ss_pred             CceEEEecCCCCCccCCCCC--CCccEEEeecceeCh-hhccCCcccCeeeccCCcccccC-Cccccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQLD--VGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVP-SHILDSILELRELKLSGN  121 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~~~--~~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~L~~N  121 (369)
                      ..+.++.++|.|+.+|..+.  ..++.|+|++|+|.. ..|.++++|+.|+|++|+|+.++ +..|..+++|+.|+|++|
T Consensus       464 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N  543 (567)
T 1dce_A          464 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN  543 (567)
T ss_dssp             TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             cCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence            46789999999999998774  679999999999762 27999999999999999999997 778999999999999999


Q ss_pred             ceecccCC
Q psy12695        122 PIQKITHE  129 (369)
Q Consensus       122 ~l~~~~~~  129 (369)
                      +|+.+++.
T Consensus       544 ~l~~~~~~  551 (567)
T 1dce_A          544 SLCQEEGI  551 (567)
T ss_dssp             GGGGSSSC
T ss_pred             cCCCCccH
Confidence            99998764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.75  E-value=1.7e-08  Score=90.02  Aligned_cols=97  Identities=21%  Similarity=0.174  Sum_probs=80.7

Q ss_pred             ceEEEecCCCCC---ccCCCCC--CCccEEEeec-ceeC---hhhccCCcccCeeeccCCcccccCCccccccccccccc
Q psy12695         47 KETVLCKAKNFT---TIPEQLD--VGTQVLDLSD-NFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELK  117 (369)
Q Consensus        47 ~~~~~c~~~~l~---~ip~~~~--~~~~~L~l~~-n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~  117 (369)
                      .+.++.++++++   .+|..+.  ..+++|+|++ |++.   +.+|.++++|++|+|++|+|+...+..|..+++|+.|+
T Consensus        52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  131 (313)
T 1ogq_A           52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence            456888888887   5787663  5799999995 7754   67899999999999999999976677899999999999


Q ss_pred             ccccceecccCCcccccCcCcccccc
Q psy12695        118 LSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       118 L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      |++|.|+...+..|..+++|...++.
T Consensus       132 Ls~N~l~~~~p~~~~~l~~L~~L~L~  157 (313)
T 1ogq_A          132 FSYNALSGTLPPSISSLPNLVGITFD  157 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred             CCCCccCCcCChHHhcCCCCCeEECc
Confidence            99999997777788888887765554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.75  E-value=1.3e-08  Score=100.70  Aligned_cols=97  Identities=22%  Similarity=0.315  Sum_probs=79.0

Q ss_pred             ceEEEecCCCCCccCCCC---CCCccEEEeecceeChh-----------hccCCcccCeeeccCCcccccCCcccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQL---DVGTQVLDLSDNFLDRY-----------TFRKLINLVELDLSYNQIQFVPSHILDSILE  112 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~---~~~~~~L~l~~n~i~~~-----------~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~  112 (369)
                      .+.+++++|+++.+|...   ...++.|+|++|+|..-           .|.++++|+.|+|++|+|+.|++.+|.++++
T Consensus       482 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~  561 (680)
T 1ziw_A          482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE  561 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccC
Confidence            567888888888887653   24688899999986531           3788899999999999999999888999999


Q ss_pred             cccccccccceecccCCcccccCcCcccccc
Q psy12695        113 LRELKLSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       113 L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      |+.|+|++|.|+.++++.|.+++.|...++.
T Consensus       562 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~  592 (680)
T 1ziw_A          562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ  592 (680)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cceeECCCCCCCcCCHhHhCCCCCCCEEECC
Confidence            9999999999999998888888877665543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.75  E-value=1.6e-08  Score=87.89  Aligned_cols=76  Identities=17%  Similarity=0.179  Sum_probs=34.6

Q ss_pred             ceEEEecCCCCCccCCCC--CCCccEEEeecceeChh-hccCCcccCeeeccCCcccccCCcccccccccccccccccce
Q psy12695         47 KETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI  123 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~~~-~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l  123 (369)
                      .+.++.+++.++.+|. +  ...++.|+|++|+|..- .+.. ++|+.|+|++|+|+.++  .|..+++|+.|+|++|+|
T Consensus        65 L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i  140 (263)
T 1xeu_A           65 LKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKL  140 (263)
T ss_dssp             CCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCC
T ss_pred             CCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcC
Confidence            3455555555555543 2  13455555555554321 1112 44444444444444442  244444444444444444


Q ss_pred             ecc
Q psy12695        124 QKI  126 (369)
Q Consensus       124 ~~~  126 (369)
                      +.+
T Consensus       141 ~~~  143 (263)
T 1xeu_A          141 KSI  143 (263)
T ss_dssp             CBC
T ss_pred             CCC
Confidence            444

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.75  E-value=6.7e-09  Score=84.25  Aligned_cols=79  Identities=27%  Similarity=0.408  Sum_probs=61.0

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |.+...+..+.+.+|+.+.|.|.+.+.|.+ .+.|++++..+..                   ..+.|.|.+++.+|+|.
T Consensus         5 P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~-------------------~~~~L~i~~v~~~d~G~   65 (176)
T 1f2q_A            5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-------------------TNSSLNIVNAKFEDSGE   65 (176)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC-------------------CSSEEEECSCCGGGCEE
T ss_pred             CEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC-------------------CceEEEEeccceecCEE
Confidence            555566777889999999999999998886 6999999876531                   24689999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEe
Q psy12695        225 YTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      |.|.+.|..+..  .+.|.|.
T Consensus        66 Y~C~~~~~~~s~--~~~l~V~   84 (176)
T 1f2q_A           66 YKCQHQQVNESE--PVYLEVF   84 (176)
T ss_dssp             EEEECTTSSCCC--CEEEEEE
T ss_pred             EEEEcCCccccc--cEEEEEe
Confidence            999999876644  4555555

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.74  E-value=1.9e-08  Score=90.46  Aligned_cols=96  Identities=21%  Similarity=0.193  Sum_probs=66.2

Q ss_pred             ceEEEecCC-CCCccCCCC-----------CCCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCcccccccc
Q psy12695         47 KETVLCKAK-NFTTIPEQL-----------DVGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILE  112 (369)
Q Consensus        47 ~~~~~c~~~-~l~~ip~~~-----------~~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~  112 (369)
                      .+.++.+++ .+..+|..+           ...++.|+|++|+|.  +..|.++++|+.|+|++|+|+.+++ .|..+++
T Consensus       152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~  230 (328)
T 4fcg_A          152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPK  230 (328)
T ss_dssp             CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCG-GGGGCTT
T ss_pred             CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCch-hhccCCC
Confidence            456777664 345677655           456777888887765  3457777778888888887777766 4677777


Q ss_pred             cccccccccceecccCCcccccCcCcccccc
Q psy12695        113 LRELKLSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       113 L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      |+.|+|++|.+....+..|..+++|...++.
T Consensus       231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~  261 (328)
T 4fcg_A          231 LEELDLRGCTALRNYPPIFGGRAPLKRLILK  261 (328)
T ss_dssp             CCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred             CCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence            7788887777766666667766666554443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.74  E-value=1.2e-08  Score=99.47  Aligned_cols=96  Identities=21%  Similarity=0.196  Sum_probs=82.7

Q ss_pred             ceEEEecCCCCCccCC-CC--CCCccEEEeeccee---ChhhccCCcccCeeeccCCcccccCCcccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPE-QL--DVGTQVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG  120 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~-~~--~~~~~~L~l~~n~i---~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  120 (369)
                      .+.++.+++.++.++. .+  -..+++|+|++|+|   .+.+|.++++|++|+|++|+|+.+++.+|.++++|+.|+|++
T Consensus        35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  114 (606)
T 3t6q_A           35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ  114 (606)
T ss_dssp             CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTT
T ss_pred             CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccc
Confidence            5789999999998854 44  25799999999985   478899999999999999999999999999999999999999


Q ss_pred             cceecccCCcccccCcCccccc
Q psy12695        121 NPIQKITHEAFINVPKLNLEDF  142 (369)
Q Consensus       121 N~l~~~~~~~f~~l~~l~~~~~  142 (369)
                      |.|+.+.+..|.++++|...++
T Consensus       115 n~i~~l~~~~~~~l~~L~~L~L  136 (606)
T 3t6q_A          115 TGISSIDFIPLHNQKTLESLYL  136 (606)
T ss_dssp             SCCSCGGGSCCTTCTTCCEEEC
T ss_pred             cCcccCCcchhccCCcccEEEC
Confidence            9999998888888887665443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.74  E-value=1.4e-08  Score=92.07  Aligned_cols=94  Identities=15%  Similarity=0.146  Sum_probs=80.8

Q ss_pred             CceEEEecCCCCCccCCCCC---CCccEEEeecce----eChhhccCCcccCe-eeccCCcccccCCccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQLD---VGTQVLDLSDNF----LDRYTFRKLINLVE-LDLSYNQIQFVPSHILDSILELRELK  117 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~~~---~~~~~L~l~~n~----i~~~~f~~l~~L~~-L~Ls~N~l~~i~~~~f~~l~~L~~L~  117 (369)
                      ..+.++.++|+|+.||.+..   ..++.|+|++|+    |+.++|.++++|++ +++++|+|+.|++++|.++++|+.|+
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~  110 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  110 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence            35789999999999997643   579999999998    45789999999876 67788999999999999999999999


Q ss_pred             ccccceecccCCcccccCcCcc
Q psy12695        118 LSGNPIQKITHEAFINVPKLNL  139 (369)
Q Consensus       118 L~~N~l~~~~~~~f~~l~~l~~  139 (369)
                      +++|.|+.+++..|....++..
T Consensus       111 l~~n~l~~~~~~~~~~~~~l~~  132 (350)
T 4ay9_X          111 ISNTGIKHLPDVHKIHSLQKVL  132 (350)
T ss_dssp             EEEECCSSCCCCTTCCBSSCEE
T ss_pred             ccccccccCCchhhcccchhhh
Confidence            9999999999888776655443

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=98.74  E-value=1.1e-09  Score=109.82  Aligned_cols=93  Identities=27%  Similarity=0.411  Sum_probs=0.0

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+.+..+.+|+.++|.|.+.|.|.|.|.|++++..+.....         +  ......+.|.|.++..+|+|.|
T Consensus       667 P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~---------~--~~~~~~~~L~I~~v~~~D~G~Y  735 (772)
T 3v2a_R          667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSG---------I--VLKDGNRNLTIRRVRKEDEGLY  735 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCC---------e--EEcCCCcEEEECcCCHHHCEEE
Confidence            4444455667889999999999999999999999999887653221         1  1122356899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEeecCC
Q psy12695        226 TCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      .|.|.|..|.....+.|.|...+.
T Consensus       736 ~C~a~N~~G~~~~~~~l~V~~~p~  759 (772)
T 3v2a_R          736 TCQACSVLGCAKVEAFFIIEGAQE  759 (772)
T ss_dssp             ------------------------
T ss_pred             EEEEEeCCcceeEEEEEEEECCCC
Confidence            999999999999999999988764

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.73  E-value=4.2e-08  Score=81.96  Aligned_cols=94  Identities=22%  Similarity=0.350  Sum_probs=64.2

Q ss_pred             CCCeeeccCCeEEEEEEeeCCC---CCeEEEEeCC--eEe---eecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        152 TPDVTAEENENVTLSCRATGSP---VPKIKWIFKE--KII---ANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p---~p~i~W~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      |..+.+.+|+.++|.|.+.|.|   .+.+.|++++  ...   .............++..........|.|.+++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            6778899999999999999987   4789999853  221   1100000001123454444455678999999999999


Q ss_pred             EEEEEEEeCCceEE-EEEEEEEe
Q psy12695        224 IYTCRAKNGAGEVF-TNISLNVI  245 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~-~~~~l~v~  245 (369)
                      .|.|.+.|..+... ....+.|.
T Consensus        87 ~Y~C~~~~~~~~~~~~~~~l~V~  109 (212)
T 1q0x_L           87 IYFCALWSNNKLVFGGGTKLTVL  109 (212)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEC
T ss_pred             EEEEEEecCchhhcCCCeEEEEe
Confidence            99999999876532 33456664

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.73  E-value=1.2e-08  Score=83.79  Aligned_cols=61  Identities=18%  Similarity=0.396  Sum_probs=51.5

Q ss_pred             eccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceE
Q psy12695        157 AEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV  236 (369)
Q Consensus       157 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~  236 (369)
                      +.+|+.+.|.|.+   |.|.+.|++++..+....                ...+.|.|.++..+|+|.|+|.|.|..|..
T Consensus       119 ~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~----------------~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          119 SRGDGSVLLTCGL---TDKTIKWLKDGSIISPLN----------------ATKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CSSSCEEEEECSS---SCSCEEEEETTEECCCSS----------------CCSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             cCCCCeEEEEeeC---CCCeEEEEECCEECcccC----------------CCcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            4599999999998   889999999998764211                135689999999999999999999998876

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.73  E-value=4.3e-08  Score=84.62  Aligned_cols=90  Identities=18%  Similarity=0.225  Sum_probs=62.3

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCC-CeEEEEeC--CeE---eeecccccccCCcceEEEEeecceeeEEEcccCC
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPV-PKIKWIFK--EKI---IANISSGLANMNKRQYIIKTINSLSNLTIVAVTM  219 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~-p~i~W~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~  219 (369)
                      +.+...+..+.+.+|++++|.|.+.+.+. +.+.|+++  +..   +.............++.+........|.|.+++.
T Consensus       150 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  229 (256)
T 3juy_B          150 IVLTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEP  229 (256)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             eEEEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCH
Confidence            34455577888999999999999999886 89999983  221   1111111111122345554455567899999999


Q ss_pred             CCCEEEEEEEEeCCce
Q psy12695        220 SDSGIYTCRAKNGAGE  235 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~g~  235 (369)
                      +|+|.|.|.|.|..+.
T Consensus       230 ~DsG~Y~C~~~~~~~~  245 (256)
T 3juy_B          230 EDFALYYCQVYGASSY  245 (256)
T ss_dssp             GGCSEEEEEECCSSCC
T ss_pred             hHCEEEEEEEeeCCCc
Confidence            9999999999986544

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.73  E-value=3.9e-08  Score=85.05  Aligned_cols=103  Identities=16%  Similarity=0.215  Sum_probs=67.5

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCC-----eEEEEe--CCeEee---ecccccccCCcceEEEEeecceeeEEEc
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVP-----KIKWIF--KEKIIA---NISSGLANMNKRQYIIKTINSLSNLTIV  215 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p-----~i~W~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~I~  215 (369)
                      |.+...+..+.+.+|++++|.|.+.+.|.+     .+.|++  ++..+.   ............++..........|.|.
T Consensus       122 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~  201 (256)
T 1nqb_A          122 IELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKIS  201 (256)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             ccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEEC
Confidence            334445667789999999999999998875     899999  444321   1111000111234544444556789999


Q ss_pred             ccCCCCCEEEEEEEEeCCceEE-EEEEEEEeecC
Q psy12695        216 AVTMSDSGIYTCRAKNGAGEVF-TNISLNVIKVE  248 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n~~g~~~-~~~~l~v~~~~  248 (369)
                      +++.+|+|.|+|.+.|..+... ....|.|....
T Consensus       202 ~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~~  235 (256)
T 1nqb_A          202 RVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRAA  235 (256)
T ss_dssp             SCCGGGCEEEEEEECSSSSCEECCCEEEEECC--
T ss_pred             CCChHHCEEEEEEEccCCceEECCCEEEEEECCC
Confidence            9999999999999998654433 23566665443

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=98.73  E-value=2.2e-08  Score=77.34  Aligned_cols=96  Identities=17%  Similarity=0.175  Sum_probs=63.4

Q ss_pred             CCCCCeeeccCCeEEEEEEeeC---CCCCeEEEEeCCeEe----eec-----cc------c--cc----cCCcceEEEEe
Q psy12695        150 PITPDVTAEENENVTLSCRATG---SPVPKIKWIFKEKII----ANI-----SS------G--LA----NMNKRQYIIKT  205 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g---~p~p~i~W~~~~~~~----~~~-----~~------~--~~----~~~~~~~~~~~  205 (369)
                      ..+..+.+.+|++++|.|.+.+   .+.+.+.|++++...    ...     ..      .  ..    ..-..++.+..
T Consensus         9 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~   88 (135)
T 1xt5_A            9 TTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN   88 (135)
T ss_dssp             CSCSEEEEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEESC
T ss_pred             CCCceEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEEec
Confidence            3456788999999999999853   677889999865321    100     00      0  00    00012333221


Q ss_pred             ecceeeEEEcccCCCCCEEEEEEEEeC-----CceEEEEEEEEEee
Q psy12695        206 INSLSNLTIVAVTMSDSGIYTCRAKNG-----AGEVFTNISLNVIK  246 (369)
Q Consensus       206 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~-----~g~~~~~~~l~v~~  246 (369)
                       .....|.|.+++.+|+|.|.|.+.+.     .|.....+.|.|..
T Consensus        89 -~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~g~~~~~~~L~V~g  133 (135)
T 1xt5_A           89 -LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTG  133 (135)
T ss_dssp             -TTSCCEEECSCCGGGCEEEEEEEECSSCCSGGGEEEEEEEEEEET
T ss_pred             -CCCCeEEECCCChhhCcEEEEEEEcCCccccccccceeEEEEEec
Confidence             23468999999999999999999984     45566778887764

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.73  E-value=5e-08  Score=75.63  Aligned_cols=98  Identities=20%  Similarity=0.225  Sum_probs=63.2

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCC-CCCeEEEEeCCeE---eeecccccccCCcceEEE-----EeecceeeEEEcccC
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGS-PVPKIKWIFKEKI---IANISSGLANMNKRQYII-----KTINSLSNLTIVAVT  218 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~L~I~~v~  218 (369)
                      +...+..+.+.+|++++|.|.+.+. +.+.+.|++++..   +........ .  .++..     ........|.|.+++
T Consensus        11 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~-~--~r~~~~~~~~~~~~~~~~L~I~~v~   87 (136)
T 2d9c_A           11 VIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGH-F--PRVTTVSELTKRNNLDFSISISNIT   87 (136)
T ss_dssp             EECCCSEEEEETTSCEEECCEESCCCSCCCCEEEETTTSSCEEEEESSSCC-C--SSBCCSSCSSSSSCCBCCEEESSCC
T ss_pred             EEecCcEEEEcCCCCEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcCCCc-c--cceeeeeeeccCCCCEEEEEECCCC
Confidence            3445677899999999999999875 5678999997621   111111000 0  11111     001225689999999


Q ss_pred             CCCCEEEEEEEEeCCc---eE--E-EEEEEEEeecC
Q psy12695        219 MSDSGIYTCRAKNGAG---EV--F-TNISLNVIKVE  248 (369)
Q Consensus       219 ~~D~G~Y~C~a~n~~g---~~--~-~~~~l~v~~~~  248 (369)
                      .+|+|.|.|.+.+..+   ..  . ..+.|.|...+
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~g~~t~L~V~~~~  123 (136)
T 2d9c_A           88 PADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKP  123 (136)
T ss_dssp             TTTCEEEEEEEEECCSSSCEEEEECCCEEEEEECCC
T ss_pred             HHHCEEEEEEEEeCCCCcccceeeCCCeEEEEEeCC
Confidence            9999999999988643   11  1 34677777654

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=98.73  E-value=2e-08  Score=89.99  Aligned_cols=97  Identities=21%  Similarity=0.244  Sum_probs=66.7

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCC-CCCeEEEEeCCeEe----eecccccccCCcceEEEEe-----ecceeeEEEccc
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGS-PVPKIKWIFKEKII----ANISSGLANMNKRQYIIKT-----INSLSNLTIVAV  217 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~~~~----~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~v  217 (369)
                      +...+..+.+.+|+.+.|.|.+.+. |.+.|.|++++...    ......    ...++....     ......|.|.++
T Consensus         6 v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~----~~~r~~~~~~~~~~~~~~~~L~I~~v   81 (327)
T 2wng_A            6 VIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEG----HFPRVTTVSESTKRENMDFSISISNI   81 (327)
T ss_dssp             EECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSS----CCTTEEECC---CTTCCBCCEEECSC
T ss_pred             EEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCC----CcceeeeecccccccCceeEEEEccC
Confidence            4455778899999999999999987 88999999987431    111110    001111111     134568999999


Q ss_pred             CCCCCEEEEEEEEeCCceE-----EEEEEEEEeecC
Q psy12695        218 TMSDSGIYTCRAKNGAGEV-----FTNISLNVIKVE  248 (369)
Q Consensus       218 ~~~D~G~Y~C~a~n~~g~~-----~~~~~l~v~~~~  248 (369)
                      +.+|+|.|+|.+.|..+..     ...+.|.|...+
T Consensus        82 ~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p  117 (327)
T 2wng_A           82 TPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKP  117 (327)
T ss_dssp             CGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCC
T ss_pred             ccccCeEEEEEeecCCCcceeEeecCcEEEEEEecC
Confidence            9999999999999987641     134567776554

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.72  E-value=4.1e-08  Score=84.54  Aligned_cols=99  Identities=16%  Similarity=0.243  Sum_probs=66.4

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCC-----CCeEEEEeCCe-----EeeecccccccCCcceEEEEeecceeeEEEccc
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSP-----VPKIKWIFKEK-----IIANISSGLANMNKRQYIIKTINSLSNLTIVAV  217 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p-----~p~i~W~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v  217 (369)
                      +...+..+.+.+|++++|.|.+.+.|     .+.+.|++++.     .+.............++..........|.|.++
T Consensus        37 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v  116 (252)
T 3bkj_L           37 MTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRV  116 (252)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCC
Confidence            34446778899999999999999988     68899998541     111110000001123455544455668999999


Q ss_pred             CCCCCEEEEEEEEeCCceEE-EEEEEEEee
Q psy12695        218 TMSDSGIYTCRAKNGAGEVF-TNISLNVIK  246 (369)
Q Consensus       218 ~~~D~G~Y~C~a~n~~g~~~-~~~~l~v~~  246 (369)
                      +.+|+|.|.|.+.|..+... ....|.|..
T Consensus       117 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  146 (252)
T 3bkj_L          117 EAEDLGVYYCFQASLVPLTFGAGTKLELKR  146 (252)
T ss_dssp             CGGGCEEEEEEECSBSSCEECCCEEEEECC
T ss_pred             CcccCEEEEEEEEcCCccEECCCEEEEEeC
Confidence            99999999999998766432 234566643

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=98.72  E-value=6.4e-08  Score=74.67  Aligned_cols=95  Identities=21%  Similarity=0.366  Sum_probs=65.2

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeC---CeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFK---EKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +...|..+.+.+|++++|.|.+.+. ...+.|+++   +.......     ....+|..........|+|.+++.+|+|.
T Consensus        21 v~Q~p~~~~v~~G~svtL~C~~s~~-~~~v~Wyrq~~~g~~~~~l~-----~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~   94 (134)
T 3kg5_A           21 IWQSPRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQLK-----LEKGRMEESQNESLATLTIQGIRFEDNGI   94 (134)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCCT-TCCCEEEEESSSSSCCEECC-----CCTTTEEEEECSSEEEEEECSCCTTTCEE
T ss_pred             EEEeCCEEEEeCCCCEEEEEEECCC-CceEEEEEECCCCCCcEEEE-----EECCeEEEEccCCEEEEEECCCCcCcCEE
Confidence            4445677899999999999999775 467999987   32221110     01235555545566789999999999999


Q ss_pred             EEEEEEeCCc-e--EEEEEEEEEeecC
Q psy12695        225 YTCRAKNGAG-E--VFTNISLNVIKVE  248 (369)
Q Consensus       225 Y~C~a~n~~g-~--~~~~~~l~v~~~~  248 (369)
                      |.|.+.+..+ .  ......|.|...+
T Consensus        95 Y~C~~~~~~~~~~~fg~GT~L~V~~~p  121 (134)
T 3kg5_A           95 YFCQQKCNNTSEVYQGCGTELRVMGFS  121 (134)
T ss_dssp             EEEEEECTTTCCEEECCCEEEEEECC-
T ss_pred             EEEEEEcCCCCceEECCCEEEEEecCC
Confidence            9999988632 1  2233567776544

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.72  E-value=2.4e-08  Score=83.69  Aligned_cols=97  Identities=16%  Similarity=0.237  Sum_probs=62.6

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCe---EEEEeCCeEeeeccccc-------ccCCcceEEE-------EeecceeeEEE
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPK---IKWIFKEKIIANISSGL-------ANMNKRQYII-------KTINSLSNLTI  214 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~---i~W~~~~~~~~~~~~~~-------~~~~~~~~~~-------~~~~~~~~L~I  214 (369)
                      |.++.+..|++++|.|.+.+.+.+.   |.|++++..........       ......+...       ......+.|.|
T Consensus         8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I   87 (225)
T 4fmk_A            8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF   87 (225)
T ss_dssp             CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred             CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence            5668899999999999999888764   89999775442211000       0000111111       11223567999


Q ss_pred             cccCCCCCEEEEEEEEeCCceEEEE-EEEEEeecC
Q psy12695        215 VAVTMSDSGIYTCRAKNGAGEVFTN-ISLNVIKVE  248 (369)
Q Consensus       215 ~~v~~~D~G~Y~C~a~n~~g~~~~~-~~l~v~~~~  248 (369)
                      .+++.+|+|.|.|.+.|..|..... ..+.+...+
T Consensus        88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~  122 (225)
T 4fmk_A           88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQP  122 (225)
T ss_dssp             CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCC
T ss_pred             ccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCC
Confidence            9999999999999999887765443 444444433

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=98.72  E-value=7.5e-08  Score=74.46  Aligned_cols=95  Identities=22%  Similarity=0.302  Sum_probs=61.9

Q ss_pred             CCCeeeccCCeEEEEEEeeCCC---CCeEEEEeCCe-----EeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        152 TPDVTAEENENVTLSCRATGSP---VPKIKWIFKEK-----IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p---~p~i~W~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      +..+.+.+|++++|.|.+.+.+   .+.+.|+++..     .+.............++.+........|+|.+++.+|+|
T Consensus        12 ~~~v~v~~G~~vtL~C~~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~~~~~~sL~I~~v~~~DsG   91 (135)
T 1p4b_L           12 ESALTTSPGETVTLTCRSSTGAVTTSNYASWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   91 (135)
T ss_dssp             CSEEEECTTCEEEEEEEETTSSCCGGGCCEEEEEEGGGEEEEEEETTTEECTTCCTTEEEEEETTEEEEEEESCCGGGCE
T ss_pred             CCcEEEcCCCCEEEEEEecCCCcCCCCEEEEEEECCCCCCEEEEEeCCccCCCCCCCEEEEcCCCEEEEEECCCChhHCE
Confidence            3448999999999999998765   56799998531     121111111111234566555555678999999999999


Q ss_pred             EEEEEEEeCCceEE-EEEEEEEee
Q psy12695        224 IYTCRAKNGAGEVF-TNISLNVIK  246 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~-~~~~l~v~~  246 (369)
                      .|.|.+.+...... ....|.|..
T Consensus        92 ~Y~C~~~~~~~~~fg~GT~L~V~~  115 (135)
T 1p4b_L           92 IYFCALWYSNHWVFGGGTKLTVLG  115 (135)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEC-
T ss_pred             EEEEEEecCCCCEECCCEEEEEEc
Confidence            99999987643222 234555544

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=98.72  E-value=2.8e-08  Score=82.86  Aligned_cols=79  Identities=18%  Similarity=0.120  Sum_probs=61.1

Q ss_pred             ccCCeEEEEEEeeCC-CCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceE
Q psy12695        158 EENENVTLSCRATGS-PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV  236 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~-p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~  236 (369)
                      -.|+.+.|.|.+.+. |.+.+.|++++..+...         .++..........|.|.+++.+|+|.|+|.+.|..|..
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~---------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~   85 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS---------DRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGH   85 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCC---------SSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEE
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEccCC---------CeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcce
Confidence            467888899998875 57899999999776532         23333344455679999999999999999999999988


Q ss_pred             EEEEEEEEe
Q psy12695        237 FTNISLNVI  245 (369)
Q Consensus       237 ~~~~~l~v~  245 (369)
                      ...+.+.|.
T Consensus        86 ~~~~~l~v~   94 (212)
T 2r15_A           86 QKTVDLSGQ   94 (212)
T ss_dssp             EEEEEECHH
T ss_pred             EEEEEEEEe
Confidence            877777554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.72  E-value=1.7e-08  Score=97.73  Aligned_cols=94  Identities=17%  Similarity=0.130  Sum_probs=68.9

Q ss_pred             ceEEEecCCCCCccCCC-C--CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQ-L--DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG  120 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~-~--~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  120 (369)
                      .+.++.++++++.++.. +  ...+++|+|++|+|.   +.+|.++++|++|+|++|+|+.+++.+|.++.+|+.|+|++
T Consensus        30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  109 (570)
T 2z63_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE  109 (570)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccc
Confidence            45788888888877643 3  246788888888743   56788888888888888888888777788888888888888


Q ss_pred             cceecccCCcccccCcCccc
Q psy12695        121 NPIQKITHEAFINVPKLNLE  140 (369)
Q Consensus       121 N~l~~~~~~~f~~l~~l~~~  140 (369)
                      |.++.++...|.++.+|...
T Consensus       110 n~l~~l~~~~~~~l~~L~~L  129 (570)
T 2z63_A          110 TNLASLENFPIGHLKTLKEL  129 (570)
T ss_dssp             SCCCCSTTCSCTTCTTCCEE
T ss_pred             cccccCCCccccccccccEE
Confidence            87777776666666665443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.72  E-value=1.7e-08  Score=89.64  Aligned_cols=94  Identities=20%  Similarity=0.201  Sum_probs=49.0

Q ss_pred             eEEEecCCCCCccCCC-C--CCCccEEEeecceeC----hhhccCCcccCeeeccCCcccccCCcccccccccccccccc
Q psy12695         48 ETVLCKAKNFTTIPEQ-L--DVGTQVLDLSDNFLD----RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG  120 (369)
Q Consensus        48 ~~~~c~~~~l~~ip~~-~--~~~~~~L~l~~n~i~----~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  120 (369)
                      +.++.+++.+..++.. +  ...++.|+|++|.+.    +..|.++++|+.|+|++|+|+.+++..|..+++|+.|+|++
T Consensus       129 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  208 (306)
T 2z66_A          129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  208 (306)
T ss_dssp             CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC
Confidence            3445555554433222 2  134555555555543    24455555666666666666655555555555666666666


Q ss_pred             cceecccCCcccccCcCcccc
Q psy12695        121 NPIQKITHEAFINVPKLNLED  141 (369)
Q Consensus       121 N~l~~~~~~~f~~l~~l~~~~  141 (369)
                      |.|+.++...|..+++|...+
T Consensus       209 N~l~~~~~~~~~~l~~L~~L~  229 (306)
T 2z66_A          209 NNFFSLDTFPYKCLNSLQVLD  229 (306)
T ss_dssp             SCCSBCCSGGGTTCTTCCEEE
T ss_pred             CccCccChhhccCcccCCEeE
Confidence            666555555555555544433

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=98.72  E-value=2.4e-08  Score=95.64  Aligned_cols=90  Identities=19%  Similarity=0.290  Sum_probs=71.4

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCCe-EEEEeCCeEeeecccccccCCcceEEEEeec----ceeeEEEcccCCCCCEEEEE
Q psy12695        153 PDVTAEENENVTLSCRATGSPVPK-IKWIFKEKIIANISSGLANMNKRQYIIKTIN----SLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      ....+.+|+.+.|.|.+.|.|.|. +.|++++..+.....        ++......    ..+.|.|.+++.+|+|.|+|
T Consensus       321 ~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~--------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  392 (524)
T 2ec8_A          321 TTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWE--------DYPKSENESNIRYVSELHLTRLKGTEGGTYTF  392 (524)
T ss_dssp             SEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBC--------CEESCCSSSCCEEEEEEEECSCCGGGCEEEEE
T ss_pred             ceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCcc--------ceeEEccCCCceeEEEEEEeecCcccCeEEEE
Confidence            357889999999999999999999 999999876653221        11111111    24689999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEeecCCc
Q psy12695        228 RAKNGAGEVFTNISLNVIKVETA  250 (369)
Q Consensus       228 ~a~n~~g~~~~~~~l~v~~~~~~  250 (369)
                      .|.|..|.....+.|.|..+|..
T Consensus       393 ~a~N~~g~~~~~~~l~V~~~P~i  415 (524)
T 2ec8_A          393 LVSNSDVNAAIAFNVYVNTKPEI  415 (524)
T ss_dssp             EEECSSCEEEEEEEEEECEEEEE
T ss_pred             EEEecCceEEEEEEEEEecCCeE
Confidence            99999999999999999876643

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.72  E-value=8.4e-09  Score=86.06  Aligned_cols=75  Identities=20%  Similarity=0.352  Sum_probs=56.4

Q ss_pred             ccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEccc-CCCCCEEEEEEEEeCCce-
Q psy12695        158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV-TMSDSGIYTCRAKNGAGE-  235 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~n~~g~-  235 (369)
                      .+|+.++|.|.  |.|.|.+.|++++..+......      ....    ...+.|.|.++ +.+|+|.|+|.|.|..|. 
T Consensus       126 ~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~------~~~~----~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~  193 (204)
T 1sy6_A          126 ISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDD------KNIG----SDEDHLSLKEFSELEQSGYYVCYPRGSKPED  193 (204)
T ss_dssp             EETTEEEEECS--CCCSSCEEEEETTEEESCCTTC------TTEE----EETTEEEETTCCHHHHCEEEEEEETTSCGGG
T ss_pred             ecCCcEEEEcC--CCCCCceEEEECCEECCCccCC------ceEe----cCCCEEEEeeCCccccCEEEEEEeccCCCCc
Confidence            38999999998  8899999999999876432111      0111    12568999999 999999999999999996 


Q ss_pred             EEEEEEEEE
Q psy12695        236 VFTNISLNV  244 (369)
Q Consensus       236 ~~~~~~l~v  244 (369)
                      .+..+.|.+
T Consensus       194 ~s~~l~l~~  202 (204)
T 1sy6_A          194 ANFYLYLRA  202 (204)
T ss_dssp             SSCEEEEEE
T ss_pred             eeEEEEEEE
Confidence            345555554

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=98.72  E-value=1.8e-08  Score=88.52  Aligned_cols=96  Identities=17%  Similarity=0.276  Sum_probs=66.0

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCC-CeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPV-PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~-p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |.+...+....+.+|+.+.|.|.+.|.|. +.+.|++++..+.........  ..+     ....+.|.|.+++.+|+|.
T Consensus       187 p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~~~-----~~~~~~L~i~~v~~~d~G~  259 (292)
T 4dkd_C          187 PALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFH--NNR-----YQKVLTLNLDQVDFQHAGN  259 (292)
T ss_dssp             CEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEE--TTE-----EEEEEEEEESSCCTTSCEE
T ss_pred             CeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceec--cce-----eeeEEEEEECccChhcCeE
Confidence            33444455666789999999999998775 457888877644321111000  001     1134689999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeecC
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      |+|.|.|..|.....+.|.|....
T Consensus       260 Y~C~a~N~~g~~~~~~~l~V~~~~  283 (292)
T 4dkd_C          260 YSCVASNVQGKHSTSMFFRVVESA  283 (292)
T ss_dssp             EEEEEECSSCEEEEEEEECC----
T ss_pred             EEEEEecCCCCceeEEEEEEeeCC
Confidence            999999999999999999887654

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=98.71  E-value=2.2e-09  Score=97.13  Aligned_cols=90  Identities=20%  Similarity=0.282  Sum_probs=39.7

Q ss_pred             eeccCCeEEEEEEee----CCCCCeEEEEeCCeEeeecccccccCCcceEEEE---eecceeeEEEcccCCCCC-EEEEE
Q psy12695        156 TAEENENVTLSCRAT----GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK---TINSLSNLTIVAVTMSDS-GIYTC  227 (369)
Q Consensus       156 ~~~~G~~~~l~C~~~----g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~v~~~D~-G~Y~C  227 (369)
                      .+.+|+.+.|.|.+.    |.|.|.+.|++++..+...... ..... .....   .....+.|.|.++..+|+ |.|+|
T Consensus       237 ~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~-~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C  314 (349)
T 4dep_C          237 EKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITID-VTINE-SISHSRTEDETRTQILSIKKVTSEDLKRSYVC  314 (349)
T ss_dssp             --------CCCEEEEECCCTTCCCEEEEESSCC---------CCCCE-EEECCTTCCEEEEECC-------------CEE
T ss_pred             EEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCc-ccccc-ceeeecCCCcEEEEEEEEeeccHHHcCCcEEE
Confidence            788999999999998    6789999999998776541111 10000 00000   011245699999999999 99999


Q ss_pred             EEEeCCceEEEEEEEEEeec
Q psy12695        228 RAKNGAGEVFTNISLNVIKV  247 (369)
Q Consensus       228 ~a~n~~g~~~~~~~l~v~~~  247 (369)
                      .|.|..|.....+.|.|..+
T Consensus       315 ~a~N~~G~~~~~~~l~v~~~  334 (349)
T 4dep_C          315 HARSAKGEVAKAAKVKQKVP  334 (349)
T ss_dssp             EEECSSCEEEEECC------
T ss_pred             EEEcCCCcEEEEEEEeeecC
Confidence            99999999999999888653

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1

Probab=98.71  E-value=1.5e-07  Score=71.42  Aligned_cols=97  Identities=14%  Similarity=0.211  Sum_probs=61.6

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCC--CCCeEEEEeCCe-----EeeecccccccCCcceEEEE--eecceeeEEEcccC
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGS--PVPKIKWIFKEK-----IIANISSGLANMNKRQYIIK--TINSLSNLTIVAVT  218 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~--p~p~i~W~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~v~  218 (369)
                      +...+..+.+.+|++++|.|...+.  ....+.|+++..     .+.............++.+.  ...+...|+|.+++
T Consensus        13 ~~~~~~~v~~~~G~svtL~C~~s~~~~~~~~v~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~   92 (122)
T 1hkf_A           13 AQSKAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLR   92 (122)
T ss_dssp             --CCCEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCC
T ss_pred             hccCCceEEEecCCCEEEEeEccCCCCcccEEEEEcCCCCCCceEEEEeCCeEeEeecCcEEEEEcCcCCEEEEEEeCCC
Confidence            3445677889999999999998753  235799998631     12211111111223455552  33456789999999


Q ss_pred             CCCCEEEEEEEEeCC-ceEEEEEEEEE
Q psy12695        219 MSDSGIYTCRAKNGA-GEVFTNISLNV  244 (369)
Q Consensus       219 ~~D~G~Y~C~a~n~~-g~~~~~~~l~v  244 (369)
                      .+|+|.|.|.+.... ......+.|.+
T Consensus        93 ~~Dsg~Y~C~v~~~~~~~~~~~~~l~L  119 (122)
T 1hkf_A           93 EEDSGHYWCRIYRPSDNSVSKSVRFYL  119 (122)
T ss_dssp             GGGCEEEEEEEECTTTCCEEEEEEEEE
T ss_pred             HHHCEEEEEEEEcCCCCcccccEEEEE
Confidence            999999999998764 23444444443

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=98.71  E-value=3.6e-08  Score=73.55  Aligned_cols=83  Identities=20%  Similarity=0.324  Sum_probs=58.4

Q ss_pred             CCCCeeeccCCeEEEEEEee-CCCCCeEEEEeCC--e---Eeeecc-cc-cc----cCCcceEEEEeecceeeEEEcccC
Q psy12695        151 ITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKE--K---IIANIS-SG-LA----NMNKRQYIIKTINSLSNLTIVAVT  218 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~-g~p~p~i~W~~~~--~---~~~~~~-~~-~~----~~~~~~~~~~~~~~~~~L~I~~v~  218 (369)
                      .|..+.+.+|++++|.|.+. +.+.+.+.|++..  .   .+.... .. ..    .....++.+........|+|.+++
T Consensus         5 ~p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~   84 (111)
T 2qhl_A            5 ELHVKTVKRGENVTMECSMSKVKDKDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQKFDLNIIGTR   84 (111)
T ss_dssp             BCEEEECCTTCCEEECCBCTTCSCGGGEEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEESSSBEEEEESSCC
T ss_pred             CCceEEEeCCCCEEEEEEccCCcccceEEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEEEcCCeEEEEECCCC
Confidence            45678899999999999997 7777789999853  1   122111 11 00    011345666544556789999999


Q ss_pred             CCCCEEEEEEEEeCC
Q psy12695        219 MSDSGIYTCRAKNGA  233 (369)
Q Consensus       219 ~~D~G~Y~C~a~n~~  233 (369)
                      .+|+|.|.|.+.+..
T Consensus        85 ~~DsG~Y~C~~~~~~   99 (111)
T 2qhl_A           85 EDDGGEYFCGEVEGN   99 (111)
T ss_dssp             GGGCEEEEEEEEETT
T ss_pred             hhHCEEEEEEEccCC
Confidence            999999999998864

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=98.71  E-value=1.4e-08  Score=94.56  Aligned_cols=84  Identities=19%  Similarity=0.276  Sum_probs=60.7

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+........             ....+.+.....+|+|.|+|.|.|.
T Consensus       334 ~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~-------------~~~~~~~~~~~~~D~G~YtC~A~N~  400 (423)
T 3qs7_E          334 EDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLD-------------NGYSISKFCNHKHQPGEYIFHAEND  400 (423)
T ss_dssp             CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCS-------------SSSEEEEECCCTTCCSCEEEEEEET
T ss_pred             ccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCcccccc-------------CCcEEEEEecccccCEEEEEEEEcC
Confidence            356788999999999999999999999999988764321000             0111222456678999999999999


Q ss_pred             CceEEEEEEEEEeecCC
Q psy12695        233 AGEVFTNISLNVIKVET  249 (369)
Q Consensus       233 ~g~~~~~~~l~v~~~~~  249 (369)
                      .|.....+.|.|...+.
T Consensus       401 ~G~~~~s~~L~v~~~p~  417 (423)
T 3qs7_E          401 DAQFTKMFTLNIRSGTK  417 (423)
T ss_dssp             TEEEEEEEEEC------
T ss_pred             CceEEEEEEEEEecCCc
Confidence            99999999999987764

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=98.71  E-value=3.9e-08  Score=89.94  Aligned_cols=87  Identities=29%  Similarity=0.353  Sum_probs=70.8

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..+...               .......|.|.+++.+|+|.|.|.|.|
T Consensus       214 ~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~---------------~~~~~~~L~i~~~~~~d~G~Y~C~a~n  278 (382)
T 1cs6_A          214 PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK---------------WLSSEPLLHIQNVDFEDEGTYECEAEN  278 (382)
T ss_dssp             CSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC---------------CSBSSSEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccE---------------EecCCcEEEEccCChhhCEEEEEEEEc
Confidence            45677889999999999999999999999987654320               112356899999999999999999999


Q ss_pred             CCceEEEEEEEEEeecCCcccC
Q psy12695        232 GAGEVFTNISLNVIKVETAVAQ  253 (369)
Q Consensus       232 ~~g~~~~~~~l~v~~~~~~~~~  253 (369)
                      ..|.....+.|.|...+.....
T Consensus       279 ~~g~~~~~~~l~V~~~p~~~~~  300 (382)
T 1cs6_A          279 IKGRDTYQGRIIIHAQPDWLDV  300 (382)
T ss_dssp             TTEEEEEEEEEEEEEEEEEEEC
T ss_pred             CCCeEEEEEEEEEecCCCcccC
Confidence            9999999999998876654433

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.71  E-value=2.5e-08  Score=86.50  Aligned_cols=96  Identities=23%  Similarity=0.369  Sum_probs=66.7

Q ss_pred             CCCCeeeccCCeEEEEEEe---eCCCCCeEEEEeCCeE------eeec----------ccccccCCcceEEE--Eeecce
Q psy12695        151 ITPDVTAEENENVTLSCRA---TGSPVPKIKWIFKEKI------IANI----------SSGLANMNKRQYII--KTINSL  209 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~---~g~p~p~i~W~~~~~~------~~~~----------~~~~~~~~~~~~~~--~~~~~~  209 (369)
                      .+....+.+|+.+.|.|.+   .+.|.|.+.|+++++.      ....          ....+  . .+...  ......
T Consensus       124 ~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~r~~~~~~~~~~~  200 (268)
T 3mj6_A          124 EPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRF--R-NRVDLTGDISRND  200 (268)
T ss_dssp             CCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTT--T-TTEEECSCGGGTB
T ss_pred             CCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCcccccccccc--c-cceEeeccCCCCe
Confidence            3456788999999999999   6779999999994321      1100          00000  0 01111  011346


Q ss_pred             eeEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       210 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      +.|.|.+++.+|+|.|+|.|.|..|.....+.|.|...++
T Consensus       201 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p  240 (268)
T 3mj6_A          201 GSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEF  240 (268)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC--
T ss_pred             EEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcCCC
Confidence            7899999999999999999999999999999999965443

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=98.71  E-value=1e-08  Score=83.30  Aligned_cols=66  Identities=17%  Similarity=0.189  Sum_probs=53.0

Q ss_pred             cCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEE
Q psy12695        159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT  238 (369)
Q Consensus       159 ~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~  238 (369)
                      .+..+.|.|.+.|.|.|.+.|++++..+...                    ..+.|.+++.+|+|.|.|.|.|..|....
T Consensus       109 ~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~--------------------~~~~i~~~~~~d~G~Y~C~a~N~~g~~~~  168 (176)
T 1hng_A          109 ECSNATLTCEVLEGTDVELKLYQGKEHLRSL--------------------RQKTMSYQWTNLRAPFKCKAVNRVSQESE  168 (176)
T ss_dssp             ETTTTEEEEECSSCSSCEEEEEETTEEEEEE--------------------SSSEEEEECSCCSSCEEEEEEETTEEEEE
T ss_pred             cCCcEEEEEEecCCCCcEEEEEECCEECCCC--------------------CcEEEEEEEccCCeEEEEEEEecCCCcee
Confidence            3556999999999999999999998776531                    12445577899999999999999999887


Q ss_pred             EEEEEE
Q psy12695        239 NISLNV  244 (369)
Q Consensus       239 ~~~l~v  244 (369)
                      .+.|.+
T Consensus       169 ~~~l~~  174 (176)
T 1hng_A          169 MEVVNC  174 (176)
T ss_dssp             EECCCC
T ss_pred             cccccC
Confidence            766544

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=98.71  E-value=4.2e-08  Score=73.61  Aligned_cols=97  Identities=20%  Similarity=0.253  Sum_probs=61.8

Q ss_pred             CCCCeeeccCCeEEEEEEeeCC--CCCeEEEEeCC-------eEeeecccccc-cCCcceEEEE--eecceeeEEEcccC
Q psy12695        151 ITPDVTAEENENVTLSCRATGS--PVPKIKWIFKE-------KIIANISSGLA-NMNKRQYIIK--TINSLSNLTIVAVT  218 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~--p~p~i~W~~~~-------~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~L~I~~v~  218 (369)
                      .|..+.+.+|++++|.|.+...  ....+.|++..       ..+........ .....++.+.  ...+...|+|.+++
T Consensus         3 sp~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   82 (115)
T 2or7_A            3 SHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTV   82 (115)
T ss_dssp             ---CEEEETTSCEEECCBCCHHHHCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCC
T ss_pred             CccEEEEEcCCCEEEEEEeecCCCCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecCccCCeEEEEEccCC
Confidence            3567889999999999998653  24579999975       22221111100 0112233322  12345689999999


Q ss_pred             CCCCEEEEEEEEeCCceEEEEEEEEEeec
Q psy12695        219 MSDSGIYTCRAKNGAGEVFTNISLNVIKV  247 (369)
Q Consensus       219 ~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~  247 (369)
                      .+|+|.|.|.+.+........+.|.|...
T Consensus        83 ~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~  111 (115)
T 2or7_A           83 VGDGGPYCCVVEIPGAFHFVDYMLEVKPE  111 (115)
T ss_dssp             GGGCEEEEEEECCTTSCEEEEEEEEEESC
T ss_pred             HHHCEEEEEEEECCCceeEEEEEEEEcCC
Confidence            99999999999876555566677777543

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=98.71  E-value=4.8e-08  Score=72.62  Aligned_cols=86  Identities=17%  Similarity=0.276  Sum_probs=56.0

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC-----eEEEEeCCeEee-ecccccc------cCCcceEEEEeecceeeEEEcccCCCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVP-----KIKWIFKEKIIA-NISSGLA------NMNKRQYIIKTINSLSNLTIVAVTMSD  221 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p-----~i~W~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~L~I~~v~~~D  221 (369)
                      .+.+.+|++++|.|.+.+.|.+     .+.|++++.... ....+..      ..-..+...  ......|.|.+++.+|
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~sL~I~~v~~~D   80 (110)
T 1ncn_A            3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSF--DSDSWTLRLHNLQIKD   80 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEE--ETTTTEEEECSCCGGG
T ss_pred             EEEEEeCCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEE--ECCCEEEEEcCCChHH
Confidence            4678999999999999876544     399999764211 1100000      000112222  2235789999999999


Q ss_pred             CEEEEEEEEeCCceEEEEEE
Q psy12695        222 SGIYTCRAKNGAGEVFTNIS  241 (369)
Q Consensus       222 ~G~Y~C~a~n~~g~~~~~~~  241 (369)
                      +|.|.|.+.+..+.....+.
T Consensus        81 ~G~Y~C~v~~~~~~~~~~~~  100 (110)
T 1ncn_A           81 KGLYQCIIHHKKPTGMIRIH  100 (110)
T ss_dssp             CEEEEEEEEEECSSSEEEEE
T ss_pred             CEEEEEEEEcCCCCceEEEE
Confidence            99999999988766544443

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=98.71  E-value=2.8e-08  Score=82.20  Aligned_cols=72  Identities=15%  Similarity=0.080  Sum_probs=50.2

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEE-eecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK-TINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ...+.+|+.++|.|.+.+. .+.+.|++++..+.....        .+... .......|.|.+++.+|+|.|.|.|.|.
T Consensus       109 ~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~--------~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~  179 (198)
T 1ugn_A          109 SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCL--------NSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS  179 (198)
T ss_dssp             CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEE--------EC------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred             ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccc--------cccccCCCcceeEEEecccCcccCeEEEEEEEeC
Confidence            3678899999999999988 789999999876532110        00000 1112478999999999999999999998


Q ss_pred             Cc
Q psy12695        233 AG  234 (369)
Q Consensus       233 ~g  234 (369)
                      .+
T Consensus       180 ~~  181 (198)
T 1ugn_A          180 NS  181 (198)
T ss_dssp             TS
T ss_pred             CC
Confidence            65

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=98.17  E-value=1.6e-09  Score=80.83  Aligned_cols=83  Identities=20%  Similarity=0.202  Sum_probs=56.9

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCe--Ee---eecccccccCCcceEEEEe--ecceeeEEEcccCCCCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK--II---ANISSGLANMNKRQYIIKT--INSLSNLTIVAVTMSDS  222 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~--~~---~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~  222 (369)
                      ..|..+.+.+|++++|.|.+.+.+.+.+.|+++..  ..   .............++.+..  ......|+|.+++.+|+
T Consensus         4 Q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~Ds   83 (110)
T 1u3h_A            4 QSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDS   83 (110)
Confidence            44677889999999999999888888999998642  11   1000000011123444332  33456899999999999


Q ss_pred             EEEEEEEEeC
Q psy12695        223 GIYTCRAKNG  232 (369)
Q Consensus       223 G~Y~C~a~n~  232 (369)
                      |.|.|.+.+.
T Consensus        84 G~Y~C~~~~~   93 (110)
T 1u3h_A           84 ATYFCAASAN   93 (110)
Confidence            9999999875

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=98.70  E-value=7.1e-08  Score=80.21  Aligned_cols=90  Identities=16%  Similarity=0.100  Sum_probs=61.6

Q ss_pred             eeeccCCeEEEEEEeeCCCC---CeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        155 VTAEENENVTLSCRATGSPV---PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~---p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ..+.+|+.++|.|.+.|.++   +.|.|++++..+..............     ......|.|..+..+|.|.|+|.|.|
T Consensus       101 ~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~d~~g~ytC~A~n  175 (202)
T 1vca_A          101 GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSL-----ETKSLEVTFTPVIEDIGKVLVCRAKL  175 (202)
T ss_dssp             SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCC-----EEEEEEEEECCCGGGTTCEEEEEEEE
T ss_pred             eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcc-----eEEEEEEEEEeeeccCCCeEEEEEEc
Confidence            56889999999999988643   36899999987653211000000000     11234678888888899999999999


Q ss_pred             CCce-------EEEEEEEEEeecCC
Q psy12695        232 GAGE-------VFTNISLNVIKVET  249 (369)
Q Consensus       232 ~~g~-------~~~~~~l~v~~~~~  249 (369)
                      ..|.       ....+.|.|..+|.
T Consensus       176 ~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          176 HIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             CSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             cccCCCCcceeEeeEEEEEEecCCC
Confidence            8765       45678888887653

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=98.70  E-value=6.9e-08  Score=72.09  Aligned_cols=82  Identities=16%  Similarity=0.271  Sum_probs=56.4

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---Eeeeccccccc----CCcceEEEEeecceeeEEEcccCCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANISSGLAN----MNKRQYIIKTINSLSNLTIVAVTMS  220 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~L~I~~v~~~  220 (369)
                      ..|..+.+.+|++++|.|.+.+.+.+.+.|++..  .   .+.........    ....++........ .|.|.+++.+
T Consensus         6 q~p~~~~v~~G~~vtL~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~-~L~I~~~~~~   84 (112)
T 1fo0_B            6 QNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDT-ELRLQVANMS   84 (112)
T ss_dssp             EECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETT-EEEEEEESCC
T ss_pred             eCCCeEEEecCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEEeCCCceecCccccCCEEEEcCCCC-eEEEcCCCHh
Confidence            3466788999999999999977677889999853  1   12211111100    01145655444444 8999999999


Q ss_pred             CCEEEEEEEEeC
Q psy12695        221 DSGIYTCRAKNG  232 (369)
Q Consensus       221 D~G~Y~C~a~n~  232 (369)
                      |+|.|.|.+.+.
T Consensus        85 Dsg~Y~C~~~~~   96 (112)
T 1fo0_B           85 QGRTLYCTCSAD   96 (112)
T ss_dssp             SCEEEEEEEESS
T ss_pred             HCEEEEEEEEcC
Confidence            999999999764

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.70  E-value=1.4e-08  Score=83.26  Aligned_cols=71  Identities=17%  Similarity=0.310  Sum_probs=56.6

Q ss_pred             eeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcc-cCCCCCEEEEEEEEeCC
Q psy12695        155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVA-VTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~-v~~~D~G~Y~C~a~n~~  233 (369)
                      ..+..|+.+.|.|.+.+ +. .|.|++++..+...                  ....|.|.+ ++.+|+|.|+|.|.|..
T Consensus         9 ~v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~------------------~~~~L~I~~~~~~~D~G~Y~C~a~n~~   68 (186)
T 1jbj_A            9 KVSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK------------------HDKHLVLQDFSEVEDSGYYVCYTPASN   68 (186)
T ss_dssp             EEEEETTEEEEECSSCC-CT-TCEEEETTEEECSC------------------CCSEEEEESCCTTTSCEEEEEECSSCC
T ss_pred             EEEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC------------------CCCEEEECCCCccccCEEEEEEEEeCC
Confidence            44578999999999988 44 49999999876531                  134799999 99999999999999999


Q ss_pred             ceEEEEEEEEEe
Q psy12695        234 GEVFTNISLNVI  245 (369)
Q Consensus       234 g~~~~~~~l~v~  245 (369)
                      |.....+.+.|.
T Consensus        69 g~~~~~~~~~v~   80 (186)
T 1jbj_A           69 KNTYLYLKARVG   80 (186)
T ss_dssp             CCCCEEECCCCC
T ss_pred             CcEEEEEEEEEe
Confidence            886555555554

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.70  E-value=9e-08  Score=80.18  Aligned_cols=94  Identities=15%  Similarity=0.192  Sum_probs=62.2

Q ss_pred             CCCeeeccCCeEEEEEEeeC-CC-CCeEEEEeCCe--Ee---eecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        152 TPDVTAEENENVTLSCRATG-SP-VPKIKWIFKEK--II---ANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g-~p-~p~i~W~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |..+.+.+|+.++|.|.+.+ .+ .+.+.|++++.  ..   .............++..........|.|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            67788999999999999644 43 57899998541  11   11110000111234555445556789999999999999


Q ss_pred             EEEEEEeCCc-e-EEEEEEEEEe
Q psy12695        225 YTCRAKNGAG-E-VFTNISLNVI  245 (369)
Q Consensus       225 Y~C~a~n~~g-~-~~~~~~l~v~  245 (369)
                      |.|.+.|..+ . ......|.|.
T Consensus        87 Y~C~~~~~~~~~~~~~~~~l~V~  109 (216)
T 2xzc_L           87 YYCGTWDSSLNPVFGGGTKLEIK  109 (216)
T ss_dssp             EEEEEECTTSCEEEBCCEEEEEC
T ss_pred             EEEEEEeCCCcceECCCEEEEEc
Confidence            9999999886 2 2233456664

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.70  E-value=4.9e-08  Score=84.02  Aligned_cols=100  Identities=16%  Similarity=0.252  Sum_probs=66.7

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCC-----CCeEEEEeCC--eEe---eecccccccCCcceEEEEeecceeeEEEc
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSP-----VPKIKWIFKE--KII---ANISSGLANMNKRQYIIKTINSLSNLTIV  215 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p-----~p~i~W~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~I~  215 (369)
                      +.+...+..+.+.+|+.++|.|.+.+.|     .+.+.|++++  ...   .............++..........|.|.
T Consensus        39 ~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~  118 (254)
T 2c1o_A           39 LVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKIS  118 (254)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             eeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEEC
Confidence            4444457788999999999999999988     4899999743  211   11000000111234554444556689999


Q ss_pred             ccCCCCCEEEEEEEEeCCceEEE-EEEEEEe
Q psy12695        216 AVTMSDSGIYTCRAKNGAGEVFT-NISLNVI  245 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n~~g~~~~-~~~l~v~  245 (369)
                      +++.+|+|.|.|.+.|..+.... ...+.|.
T Consensus       119 ~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~  149 (254)
T 2c1o_A          119 RVEAEDLGIYYCVQGSHFPPTFGAGTKLELK  149 (254)
T ss_dssp             SCCGGGCSEEEEEECSSSSCEEBCCEEEEEC
T ss_pred             cCCcccCEEEEEEEEcCcceEecCCEEEEEC
Confidence            99999999999999998664322 2355554

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=98.70  E-value=2.6e-08  Score=89.97  Aligned_cols=97  Identities=13%  Similarity=0.171  Sum_probs=69.1

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeCCCC-----------CeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEccc
Q psy12695        149 RPITPDVTAEENENVTLSCRATGSPV-----------PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV  217 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g~p~-----------p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v  217 (369)
                      .....++.+.+|+.+.|.|.+.+.|.           +.+.|++++................+..    ...+.|.|.++
T Consensus        11 ~~~~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~~   86 (349)
T 4dep_C           11 LDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRIS----KEKDVLWFRPT   86 (349)
T ss_dssp             ECCCCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEE----EETTEEEESSC
T ss_pred             cceeeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEe----ecCCEEEEccC
Confidence            33456788999999999999998765           8999999874211000000000111211    12458999999


Q ss_pred             CCCCCEEEEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        218 TMSDSGIYTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       218 ~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      +.+|+|.|.|.|.|..|.....+.|.|...+.
T Consensus        87 ~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~  118 (349)
T 4dep_C           87 LLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDS  118 (349)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEEEEECCCT
T ss_pred             ChhhCEEEEEEEecCCceEEEEEEEEEecCCc
Confidence            99999999999999999988889999987553

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.70  E-value=3e-08  Score=83.82  Aligned_cols=100  Identities=22%  Similarity=0.389  Sum_probs=67.7

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCC-CeEEEEeCCeEee--ecccccccCCcceEEEE---------eecceeeEEEccc
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPV-PKIKWIFKEKIIA--NISSGLANMNKRQYIIK---------TINSLSNLTIVAV  217 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~-p~i~W~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~~~~~L~I~~v  217 (369)
                      ..|.++.+.+|+.+.|.|.+.+.|. +.+.|++++....  ...............+.         .....+.|.|.++
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v   84 (231)
T 2pet_A            5 SVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEA   84 (231)
T ss_dssp             CCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSC
T ss_pred             cCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEccc
Confidence            3567889999999999999999985 8999998653211  00000000000000011         0122345999999


Q ss_pred             CCCCCEEEEEEEEeCC-ceEEEEEEEEEeecCC
Q psy12695        218 TMSDSGIYTCRAKNGA-GEVFTNISLNVIKVET  249 (369)
Q Consensus       218 ~~~D~G~Y~C~a~n~~-g~~~~~~~l~v~~~~~  249 (369)
                      +.+|+|.|.|.+.+.. |.....+.|.|...+.
T Consensus        85 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~  117 (231)
T 2pet_A           85 QVGDERDYVCVVRAGAAGTAEATARLNVFAKPE  117 (231)
T ss_dssp             CGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCC
T ss_pred             CcccCceEEEEEEecCCCceEEEEEEEEEecCC
Confidence            9999999999999987 7888888999987653

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=98.70  E-value=1.6e-08  Score=83.49  Aligned_cols=70  Identities=14%  Similarity=0.218  Sum_probs=52.5

Q ss_pred             eeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695        156 TAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG  234 (369)
Q Consensus       156 ~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g  234 (369)
                      .+.+|+.++|.|.+.+. .+.+.|++++..+....        ...........+.|.|.+++.+|+|.|+|.|.|..+
T Consensus       110 ~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~--------~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          110 LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLC--------LRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGS--------EEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             eecCCCeEEEEEecCCC-CCEEEEEeCCCccccee--------ecccccccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            67899999999999884 56899999986543211        111111223457899999999999999999999876

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=98.70  E-value=4.9e-08  Score=72.89  Aligned_cols=81  Identities=20%  Similarity=0.304  Sum_probs=55.6

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCe-----EeeecccccccCCcceEEEE--eecceeeEEEcccCCCCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK-----IIANISSGLANMNKRQYIIK--TINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~  222 (369)
                      ..+..+.+.+|++++|.|.+.+.+.+.+.|+++..     .+.............++.+.  .......|.|.+++.+|+
T Consensus         5 q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds   84 (112)
T 2z35_A            5 QTGGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDS   84 (112)
T ss_dssp             CSCSEEEEETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCSTTC
T ss_pred             eCCCcEEEcCCCCEEEEEEECCCCCCeEEEEEECCCCCcEEeEEEecccCCccCCCEEEEEcCCCCEEEEEECCCChhhC
Confidence            45677889999999999999887778899998531     12111111100112345443  223456899999999999


Q ss_pred             EEEEEEEE
Q psy12695        223 GIYTCRAK  230 (369)
Q Consensus       223 G~Y~C~a~  230 (369)
                      |.|.|.+.
T Consensus        85 G~Y~C~~~   92 (112)
T 2z35_A           85 AVYYCALS   92 (112)
T ss_dssp             SEEEEEEE
T ss_pred             EEEEEEEE
Confidence            99999987

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.70  E-value=5e-08  Score=84.77  Aligned_cols=101  Identities=13%  Similarity=0.174  Sum_probs=68.4

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCCC------CCeEEEEeCC--eE---eeecccccccCCcceEEEEeecceeeEEEc
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGSP------VPKIKWIFKE--KI---IANISSGLANMNKRQYIIKTINSLSNLTIV  215 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p------~p~i~W~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~  215 (369)
                      .+...|..+.+.+|++++|.|.+.+.|      .+.+.|+++.  ..   +.............++.+........|.|.
T Consensus         7 ~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~   86 (264)
T 2gjj_A            7 VLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIG   86 (264)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEES
T ss_pred             ceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEEC
Confidence            344557788999999999999999887      6789999852  21   111110000011235555444556789999


Q ss_pred             ccCCCCCEEEEEEEEeCCceE-EEEEEEEEeec
Q psy12695        216 AVTMSDSGIYTCRAKNGAGEV-FTNISLNVIKV  247 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~v~~~  247 (369)
                      +++.+|+|.|.|.+.|..+.. ...+.|.|...
T Consensus        87 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~  119 (264)
T 2gjj_A           87 SVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRG  119 (264)
T ss_dssp             SCCGGGCEEEEEEECSSSSCEECCCEEEEEECC
T ss_pred             CCCHHHCEEEEEEEecCCccEecCCEEEEEEcC
Confidence            999999999999999876532 23356777654

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=98.70  E-value=1.4e-08  Score=91.40  Aligned_cols=95  Identities=19%  Similarity=0.195  Sum_probs=74.2

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEee-------CCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccC
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRAT-------GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT  218 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~-------g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~  218 (369)
                      |.+...+.++.+.+|+.+.|.|.+.       +.|.+.+.|++++..+.....     ...++..    ..+.|.|.+++
T Consensus        19 p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~-----~~~~~~~----~~~~L~i~~v~   89 (339)
T 3o4o_C           19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGE-----EETRMWA----QDGALWLLPAL   89 (339)
T ss_dssp             EEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCC-----SSSCEEE----ETTEEEESSBC
T ss_pred             HhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCcc-----ccccEEe----eCCeEEECCCC
Confidence            4555667889999999999999998       899999999998865321110     0112211    24589999999


Q ss_pred             CCCCEEEEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        219 MSDSGIYTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       219 ~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      .+|+|.|.|.+.|..|.....+.|.|...+.
T Consensus        90 ~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~  120 (339)
T 3o4o_C           90 QEDSGTYVCTTRNASYCDKMSIELRVFENTD  120 (339)
T ss_dssp             TTCCEEEECCEEETTEEEEEEEEEEEECSCG
T ss_pred             cccCEEEEEEEECCcceEEEEEEEEEEcCCC
Confidence            9999999999999999988889999987654

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=98.69  E-value=4.8e-08  Score=73.48  Aligned_cols=82  Identities=18%  Similarity=0.299  Sum_probs=56.6

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCC-CCCeEEEEeCC--e---Eeeecc-cccccCCcceEEEE--eecceeeEEEcccCCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGS-PVPKIKWIFKE--K---IIANIS-SGLANMNKRQYIIK--TINSLSNLTIVAVTMS  220 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~--~---~~~~~~-~~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~  220 (369)
                      ..|..+.+.+|++++|.|.+.+. +.+.+.|+++.  .   .+.... .........++.+.  .......|+|.+++.+
T Consensus         5 q~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~   84 (116)
T 1fo0_A            5 QTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIE   84 (116)
T ss_dssp             CCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             cCCCcEEEecCCcEEEEeEecCCCCCeEEEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEEeCCCCEEEEEECCCChh
Confidence            44677899999999999999876 55689999853  1   111111 11111123455553  3345668999999999


Q ss_pred             CCEEEEEEEEe
Q psy12695        221 DSGIYTCRAKN  231 (369)
Q Consensus       221 D~G~Y~C~a~n  231 (369)
                      |+|.|.|.+.+
T Consensus        85 DsG~Y~C~~~~   95 (116)
T 1fo0_A           85 DSAVYFCAMRG   95 (116)
T ss_dssp             GCEEEEEEEEC
T ss_pred             hCEEEEEEEEc
Confidence            99999999987

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=98.69  E-value=6.6e-08  Score=72.68  Aligned_cols=83  Identities=19%  Similarity=0.304  Sum_probs=56.7

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCC-CCCeEEEEeCC--e---Eeeecccccc---cCCcceEEEEe--ecceeeEEEcccC
Q psy12695        150 PITPDVTAEENENVTLSCRATGS-PVPKIKWIFKE--K---IIANISSGLA---NMNKRQYIIKT--INSLSNLTIVAVT  218 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~--~---~~~~~~~~~~---~~~~~~~~~~~--~~~~~~L~I~~v~  218 (369)
                      ..|..+.+.+|++++|.|.+.+. +.+.+.|++..  .   .+........   .....++.+..  ......|+|.+++
T Consensus         5 q~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~   84 (116)
T 1tvd_A            5 QSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVR   84 (116)
T ss_dssp             CCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             cCCCcEEEecCCeEEEEeEeEcCCCCcEEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEecCCCEEEEEEccCC
Confidence            45678899999999999999764 55679999853  1   1211111100   01134555443  3455689999999


Q ss_pred             CCCCEEEEEEEEeC
Q psy12695        219 MSDSGIYTCRAKNG  232 (369)
Q Consensus       219 ~~D~G~Y~C~a~n~  232 (369)
                      .+|+|.|.|.+.+.
T Consensus        85 ~~DsG~Y~C~~~~~   98 (116)
T 1tvd_A           85 TEDSATYYCAFTLP   98 (116)
T ss_dssp             GGGCEEEEEEEECT
T ss_pred             hHHCEEEEEEEeCC
Confidence            99999999999874

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=98.69  E-value=7.8e-08  Score=92.00  Aligned_cols=99  Identities=18%  Similarity=0.292  Sum_probs=72.6

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCe-EEEEeCCeEe--eecccccccCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPK-IKWIFKEKII--ANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~-i~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      |.+...+....+.+|+.+.|.|.+.|.|.|. +.|++++..+  ......... ...     .....+.|.|.+++.+|+
T Consensus       212 p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~L~I~~~~~~D~  285 (524)
T 2ec8_A          212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHH-GDF-----NYERQATLTISSARVNDS  285 (524)
T ss_dssp             CEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEEC-SSS-----CEEEEEEEEESSCCTTTC
T ss_pred             CcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccc-cCC-----ccceEEEEEECCCCHHHC
Confidence            3333445566789999999999999999887 9999998762  111000000 000     112357899999999999


Q ss_pred             EEEEEEEEeCCceEEEEEEEEEeecCCc
Q psy12695        223 GIYTCRAKNGAGEVFTNISLNVIKVETA  250 (369)
Q Consensus       223 G~Y~C~a~n~~g~~~~~~~l~v~~~~~~  250 (369)
                      |.|.|.|.|..|.....+.|.|...+..
T Consensus       286 G~Y~C~a~n~~g~~~~~~~l~V~~~p~~  313 (524)
T 2ec8_A          286 GVFMCYANNTFGSANVTTTLEVVDKGFI  313 (524)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEESSCEE
T ss_pred             EEEEEEEEecCCceEEEEEEEEeccCce
Confidence            9999999999999988999999876543

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=98.69  E-value=3.5e-08  Score=75.28  Aligned_cols=80  Identities=19%  Similarity=0.250  Sum_probs=55.7

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeCC--CCCeEEEEeC--CeEeeecccccccCCcceEEEEe--ecceeeEEEcccCCCCC
Q psy12695        149 RPITPDVTAEENENVTLSCRATGS--PVPKIKWIFK--EKIIANISSGLANMNKRQYIIKT--INSLSNLTIVAVTMSDS  222 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g~--p~p~i~W~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~  222 (369)
                      .+.|..+.+.+|++++|.|.+.+.  +.+.+.|+++  +......     .....++....  ......|+|.+++.+|+
T Consensus         4 ~Q~p~~v~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~l-----i~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds   78 (126)
T 3moq_A            4 DQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQS-----ISIGGRYVETVNKGSKSFSLRISDLRVEDS   78 (126)
T ss_dssp             EEECSEEEEETTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEE-----CCCBTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EECCceEEEeCCCCEEEEEEeecCccCCceEEEEEeCCCCCceEE-----EEeCCcEEEEEeCCCCEEEEEECcCChHhC
Confidence            345677899999999999999875  5667999984  2211000     00122443332  23467899999999999


Q ss_pred             EEEEEEEEeCC
Q psy12695        223 GIYTCRAKNGA  233 (369)
Q Consensus       223 G~Y~C~a~n~~  233 (369)
                      |.|.|.+.+..
T Consensus        79 G~Y~C~~~~~~   89 (126)
T 3moq_A           79 GTYKCQAFYVF   89 (126)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEcC
Confidence            99999998754

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.69  E-value=6.2e-08  Score=79.47  Aligned_cols=89  Identities=16%  Similarity=0.146  Sum_probs=62.6

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...|.. .+.+|++++|.|.+.+. .+.+.|++++..+.......          ......+.|.|.+++.+|+|.|
T Consensus         5 P~i~~~p~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~----------~~~~~~~~L~I~~v~~~D~G~Y   72 (188)
T 1oll_A            5 PFIWAEPHF-MVPKEKQVTICCQGNYG-AVEYQLHFEGSLFAVDRPKP----------PERINKVKFYIPDMNSRMAGQY   72 (188)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCTT-CCEEEEEETTEEEEEECCSS----------CTTCCEEEEEESSCCGGGCEEE
T ss_pred             CEEEeecCC-cCCCCCCEEEEEecCCC-CCEEEEEECCCccccccccc----------CCCcceeEEEeCcCCcccCeEE
Confidence            344444555 78999999999999764 46899999987654211100          0112356899999999999999


Q ss_pred             EEEEEeCCceE--EEEEEEEEee
Q psy12695        226 TCRAKNGAGEV--FTNISLNVIK  246 (369)
Q Consensus       226 ~C~a~n~~g~~--~~~~~l~v~~  246 (369)
                      .|.+.|..|..  +..+.|.|..
T Consensus        73 ~C~~~~~~~~~~~s~~~~l~V~~   95 (188)
T 1oll_A           73 SCIYRVGELWSEPSNLLDLVVTE   95 (188)
T ss_dssp             EEEEEETTEECCCCCCEEEEEES
T ss_pred             EEEecCCCCCCCCCCceEEEecc
Confidence            99999876532  4456677764

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.68  E-value=2.3e-08  Score=85.83  Aligned_cols=99  Identities=15%  Similarity=0.200  Sum_probs=67.1

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCCCe-----EEEEeCCeEee------ecccccc--cCCcceEE-EEeecceeeEEEcc
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPVPK-----IKWIFKEKIIA------NISSGLA--NMNKRQYI-IKTINSLSNLTIVA  216 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~p~-----i~W~~~~~~~~------~~~~~~~--~~~~~~~~-~~~~~~~~~L~I~~  216 (369)
                      .+..+.+.+|+.++|.|.+.|.|.+.     +.|++++....      .......  ..+..++. .....+...|.|.+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   88 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG   88 (248)
T ss_dssp             TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred             CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence            35567899999999999999988876     99998642110      0000000  00000000 00112345699999


Q ss_pred             cCCCCCEEEEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        217 VTMSDSGIYTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       217 v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      ++.+|+|.|+|.+.|..+.....+.|.|...|.
T Consensus        89 v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~  121 (248)
T 3pv7_A           89 IQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPA  121 (248)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCE
T ss_pred             CCHHHCeEEEEEEEeCCccceeEEEEEEecCCc
Confidence            999999999999999999888889999987554

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.68  E-value=5e-08  Score=84.24  Aligned_cols=100  Identities=19%  Similarity=0.268  Sum_probs=66.3

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---Eeeec-ccccccCCcceEEE--EeecceeeEEEcccC
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANI-SSGLANMNKRQYII--KTINSLSNLTIVAVT  218 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~-~~~~~~~~~~~~~~--~~~~~~~~L~I~~v~  218 (369)
                      .+...+..+.+.+|++++|.|.+.+.|.+.+.|++..  .   .+... ..........++..  ........|.|.+++
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   84 (256)
T 3tf7_C            5 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH   84 (256)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC
T ss_pred             EEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC
Confidence            3455677889999999999999999999999999843  1   11111 00000011223333  223456789999999


Q ss_pred             CCCCEEEEEEEEeCCce----EEEEEEEEEee
Q psy12695        219 MSDSGIYTCRAKNGAGE----VFTNISLNVIK  246 (369)
Q Consensus       219 ~~D~G~Y~C~a~n~~g~----~~~~~~l~v~~  246 (369)
                      .+|+|.|.|.+.|..+.    ....+.|.|..
T Consensus        85 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~  116 (256)
T 3tf7_C           85 RSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSP  116 (256)
T ss_dssp             GGGCSEEEEEEECTTCTTCEEECCCEEEEEEC
T ss_pred             cccCEEEEEEEecCCCccceEECCCeEEEEeC
Confidence            99999999999987642    22335666664

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=98.68  E-value=2.9e-08  Score=85.55  Aligned_cols=81  Identities=23%  Similarity=0.373  Sum_probs=65.3

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+..                   ....|.|.+++.+|+|.
T Consensus         2 P~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~-------------------~~~~l~i~~~~~~d~G~   62 (262)
T 3rjd_A            2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQT-------------------STPSYRITSASVNDSGE   62 (262)
T ss_dssp             CEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSC-------------------CSSEEEESSCCGGGCEE
T ss_pred             CeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeec-------------------cCCeEEEecCCcccCeE
Confidence            555666778899999999999999999988 8999999876532                   14579999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeec
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKV  247 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~  247 (369)
                      |.|.+.|..+..  .+.+.|...
T Consensus        63 Y~C~~~~~~~s~--~~~l~v~~~   83 (262)
T 3rjd_A           63 YRCQRGLSGRSD--PIQLEIHRG   83 (262)
T ss_dssp             EEEEESSSCCCC--CEEEEEECS
T ss_pred             EEEEEecCCccc--cEEEEEecc
Confidence            999999877654  455555544

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=98.68  E-value=1.4e-08  Score=84.13  Aligned_cols=89  Identities=18%  Similarity=0.256  Sum_probs=63.7

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...|. ..+.+|+.++|.|.+.+.|. .+.|++++..+.......          ......+.|.|.+++.+|+|.|
T Consensus         6 P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~----------~~~~~~~~L~i~~v~~~D~G~Y   73 (198)
T 1ugn_A            6 PTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIP----------QELVKKGQFPIPSITWEHTGRY   73 (198)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSC----------HHHHTTTEEEESSCCGGGCEEE
T ss_pred             CeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCcccccccccc----------ccCCcccEEEECCCCHHHCeEE
Confidence            34444444 47899999999999998876 799999987553211000          0012346799999999999999


Q ss_pred             EEEEEeCC-c--eEEEEEEEEEee
Q psy12695        226 TCRAKNGA-G--EVFTNISLNVIK  246 (369)
Q Consensus       226 ~C~a~n~~-g--~~~~~~~l~v~~  246 (369)
                      .|.+.|.. |  ..+..+.|.|..
T Consensus        74 ~C~a~n~~~g~~~~s~~~~l~V~~   97 (198)
T 1ugn_A           74 RCYYGSDTAGRSESSDPLELVVTG   97 (198)
T ss_dssp             EEEEEETTTEECCCCCCEEEEEEC
T ss_pred             EEEEECCCCCcccCCccEEEEEcc
Confidence            99999987 5  335567777776

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.68  E-value=4.7e-08  Score=85.06  Aligned_cols=102  Identities=14%  Similarity=0.209  Sum_probs=66.3

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCC-----CCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSP-----VPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTI  214 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p-----~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I  214 (369)
                      .+.+...|..+.+.+|++++|.|.+.+.+     .+.+.|+++.  .   .+.............++.+........|.|
T Consensus        15 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I   94 (268)
T 1x9q_A           15 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKI   94 (268)
T ss_dssp             CCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             cceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEE
Confidence            34455557788899999999999998887     4789999853  1   121111100001123555544455678999


Q ss_pred             cccCCCCCEEEEEEEEeCCceE-EEEEEEEEee
Q psy12695        215 VAVTMSDSGIYTCRAKNGAGEV-FTNISLNVIK  246 (369)
Q Consensus       215 ~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~v~~  246 (369)
                      .+++.+|+|.|.|.+.|..+.. ...+.|.|..
T Consensus        95 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~  127 (268)
T 1x9q_A           95 NRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKS  127 (268)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEC---
T ss_pred             CCCChhHCEEEEEEEecCCCceEcCCEEEEEcc
Confidence            9999999999999999875532 2334555554

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=98.68  E-value=2.2e-08  Score=88.95  Aligned_cols=89  Identities=20%  Similarity=0.240  Sum_probs=67.3

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCC-CCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGS-PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |.+. .+.+..+.+|+.+.|.|.+.+. |.+.+.|++++..+.....         +.  ...+...|.|.+++.+|+|.
T Consensus         8 P~~~-~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~---------~~--~~~~~~~L~i~~~~~~d~G~   75 (317)
T 2y25_A            8 PHFV-EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK---------HD--FKDGICTLLITEFSKKDAGI   75 (317)
T ss_dssp             CEEE-EEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC----------------CCEEEEETTCCSTTCSC
T ss_pred             CcEe-eeeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCc---------EE--EECCeEEEEEccCCcccCeE
Confidence            4444 3345889999999999999887 7789999999987653211         11  11345689999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEee
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      |.|.+.|..|.....+.|.|..
T Consensus        76 Y~C~~~n~~g~~~~~~~l~v~~   97 (317)
T 2y25_A           76 YEVILKDDRGKDKSRLKLVDEA   97 (317)
T ss_dssp             EEEEEESSSCEEEEEECCSTHH
T ss_pred             EEEEEECCCCcEEEEEEEEEec
Confidence            9999999999887776665543

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=98.68  E-value=3.2e-08  Score=83.40  Aligned_cols=89  Identities=13%  Similarity=0.169  Sum_probs=62.0

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeeccee--eEEEcccCCCCCE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS--NLTIVAVTMSDSG  223 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G  223 (369)
                      |.+...|. ..+.+|++++|.|.+.+ +.+.+.|++++..+.....        .  ........  .|.|.+++.+|+|
T Consensus        10 P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~--------~--~~~~~~~~~~~L~I~~v~~~D~G   77 (218)
T 1uct_A           10 PFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIG--------R--RLKFWNETDPEFVIDHMDANKAG   77 (218)
T ss_dssp             CCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECS--------E--ECC----CCCEEEECSCCGGGCE
T ss_pred             CEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccccc--------c--cCCCCcceeeEEEEcccccccCE
Confidence            44544444 57899999999999987 6789999998765432110        0  00011234  8999999999999


Q ss_pred             EEEEEEEeCCceE--EEEEEEEEee
Q psy12695        224 IYTCRAKNGAGEV--FTNISLNVIK  246 (369)
Q Consensus       224 ~Y~C~a~n~~g~~--~~~~~l~v~~  246 (369)
                      .|.|.+.|..|..  +..+.|.|..
T Consensus        78 ~Y~C~a~n~~~~~~~s~~~~l~V~~  102 (218)
T 1uct_A           78 RYQCQYRIGHYRFRYSDTLELVVTG  102 (218)
T ss_dssp             EEEEEEEETTTEEEECCCEEEEEEC
T ss_pred             EEEEEEEcCCCceeecCCEEEEEcC
Confidence            9999999987643  3446777765

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.68  E-value=1.3e-07  Score=81.59  Aligned_cols=102  Identities=20%  Similarity=0.241  Sum_probs=67.9

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCC-eEEEEeC--CeEe---eecccccccCCcceEEEEeecceeeEEEcccCC
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFK--EKII---ANISSGLANMNKRQYIIKTINSLSNLTIVAVTM  219 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p-~i~W~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~  219 (369)
                      +.+...+....+.+|++++|.|.+.+.+.+ .+.|+++  +...   .............++..........|.|.+++.
T Consensus       142 ~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  221 (257)
T 3gkz_A          142 IVLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEA  221 (257)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             eEEEcCCceEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCCh
Confidence            444555667889999999999999998888 8999984  2211   111110001112345554455567899999999


Q ss_pred             CCCEEEEEEEEeCCceEEEE-EEEEEeec
Q psy12695        220 SDSGIYTCRAKNGAGEVFTN-ISLNVIKV  247 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~g~~~~~-~~l~v~~~  247 (369)
                      +|+|.|.|.+.+........ ..|.|...
T Consensus       222 ~D~G~Y~C~~~~~~~~~fg~gt~l~v~~~  250 (257)
T 3gkz_A          222 EDAASYFCHQWSSFPFTFGSGTKLEIKRA  250 (257)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEECCC
T ss_pred             HHCEEEEEEEccCCceEEcCCEEEEEEeC
Confidence            99999999998865544433 45555543

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=98.68  E-value=9.8e-08  Score=92.53  Aligned_cols=108  Identities=17%  Similarity=0.245  Sum_probs=74.5

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeE----EEEe--CCe--EeeecccccccCCcceEEEEe--ecceeeEEEc
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKI----KWIF--KEK--IIANISSGLANMNKRQYIIKT--INSLSNLTIV  215 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i----~W~~--~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~  215 (369)
                      |.+...+..+.+.+|+.+.|.|.+.|.|.|.+    .|++  ++.  .+.............++.+..  ..+...|.|.
T Consensus       332 p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~  411 (585)
T 2ocw_A          332 STIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILN  411 (585)
T ss_pred             cccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEEC
Confidence            44444567788899999999999999999987    7998  775  443221110011112232221  1223459999


Q ss_pred             ccCCCCCEEEEEEEEeCCceEEEEEEEEEeecCCcccCC
Q psy12695        216 AVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQP  254 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~  254 (369)
                      +++.+|+|.|+|.| |..|.....+.|.|...++....+
T Consensus       412 ~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~  449 (585)
T 2ocw_A          412 QLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKVP  449 (585)
T ss_pred             CCChhhCEEEEEcc-cCCCccceeEEEEEecCccccccC
Confidence            99999999999999 999998889999998765444333

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=98.67  E-value=4.1e-08  Score=89.95  Aligned_cols=98  Identities=19%  Similarity=0.435  Sum_probs=69.9

Q ss_pred             CCccCCCCC-eeeccCCeEEEEEEeeCCCCCeEEEEe-CCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCC--
Q psy12695        146 PNIRPITPD-VTAEENENVTLSCRATGSPVPKIKWIF-KEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD--  221 (369)
Q Consensus       146 p~i~~~~~~-~~~~~G~~~~l~C~~~g~p~p~i~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D--  221 (369)
                      |.+...|.. +.+.+|+.++|.|.+.|.|.|.+.|++ ++..+.....       .+.    ....+.|.|.+++.+|  
T Consensus         4 P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~-------~~~----~~~~~~L~i~~~~~~d~~   72 (388)
T 2v5m_A            4 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPG-------LRQ----ISSDGKLVFPPFRAEDYR   72 (388)
T ss_dssp             EEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTT-------TBE----ECSTTEEEECCCCGGGCC
T ss_pred             CchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCC-------ceE----EcCCceEEecccChhhcc
Confidence            444444544 567899999999999999999999999 5654432111       011    1234679999999987  


Q ss_pred             ----CEEEEEEEEeCCceE-EEEEEEEEeecCCcccCC
Q psy12695        222 ----SGIYTCRAKNGAGEV-FTNISLNVIKVETAVAQP  254 (369)
Q Consensus       222 ----~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~~~~~~  254 (369)
                          +|.|+|.|.|..|.. +..+.+.+...+.....+
T Consensus        73 ~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~  110 (388)
T 2v5m_A           73 QEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV  110 (388)
T ss_dssp             HHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCBC
T ss_pred             ccccCceEEEEEEccCCeEEecceEEEEccccccccCc
Confidence                999999999999874 456777777665544333

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.67  E-value=1.5e-08  Score=94.90  Aligned_cols=72  Identities=32%  Similarity=0.493  Sum_probs=60.3

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      .+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...                   +..+   .++.+|+|.|+|.|.|.
T Consensus       378 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~-------------------g~~~---~v~~~d~G~Y~C~a~N~  435 (450)
T 1z7z_I          378 GNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-------------------GESV---TVTRDLEGTYLCRARST  435 (450)
T ss_dssp             SEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT-------------------TSCE---ECCGGGCEEEEEEEEET
T ss_pred             CceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCC-------------------CCeE---eEehhhCeEEEEEEEeC
Confidence            5678999999999999999999999999998733210                   1112   57889999999999999


Q ss_pred             CceEEEEEEEEEee
Q psy12695        233 AGEVFTNISLNVIK  246 (369)
Q Consensus       233 ~g~~~~~~~l~v~~  246 (369)
                      .|.....+.|.|..
T Consensus       436 ~G~~~~~~~l~V~~  449 (450)
T 1z7z_I          436 QGEVTREVTVNVLS  449 (450)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             CCceeEEEEEEEEc
Confidence            99999999998865

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=98.67  E-value=4.9e-08  Score=73.06  Aligned_cols=78  Identities=21%  Similarity=0.294  Sum_probs=54.9

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCC--CCeEEEEeCC--eEeeecccccccCCcceEEEEe--ecceeeEEEcccCCCCCE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSP--VPKIKWIFKE--KIIANISSGLANMNKRQYIIKT--INSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G  223 (369)
                      ..|..+.+.+|++++|.|.+.+.+  .+.+.|+++.  ......     .....++....  ......|+|.+++.+|+|
T Consensus         5 q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~-----~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG   79 (113)
T 1sq2_N            5 QTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEES-----ISKGGRYVETVNSGSKSFSLRINDLTVEDGG   79 (113)
T ss_dssp             EECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEE-----CCCBTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             eCCccEEEecCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceEe-----EEeCCCEEEEEeCCCCEEEEEECCCChhhCE
Confidence            346778899999999999998765  5689999853  211100     01122444332  234678999999999999


Q ss_pred             EEEEEEEeC
Q psy12695        224 IYTCRAKNG  232 (369)
Q Consensus       224 ~Y~C~a~n~  232 (369)
                      .|.|.+.+.
T Consensus        80 ~Y~C~~~~~   88 (113)
T 1sq2_N           80 TYRCGLGVA   88 (113)
T ss_dssp             EEEEEECBT
T ss_pred             EEEEEEEeC
Confidence            999999873

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.67  E-value=1.4e-07  Score=83.24  Aligned_cols=101  Identities=17%  Similarity=0.238  Sum_probs=66.9

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCCCCC------eEEEEeCC--eE---eeecccccccCCcceEEEEeecceeeEEEc
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGSPVP------KIKWIFKE--KI---IANISSGLANMNKRQYIIKTINSLSNLTIV  215 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p~p------~i~W~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~  215 (369)
                      .+...+..+.+.+|++++|.|.+.+.+.+      .+.|+++.  ..   +.............++..........|.|.
T Consensus       161 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~  240 (291)
T 2gki_A          161 VMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTIS  240 (291)
T ss_dssp             CEECSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             eEEcCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEEC
Confidence            34445667889999999999999998876      89999963  21   111111000011234554444456789999


Q ss_pred             ccCCCCCEEEEEEEEeCCceEEEE-EEEEEeec
Q psy12695        216 AVTMSDSGIYTCRAKNGAGEVFTN-ISLNVIKV  247 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n~~g~~~~~-~~l~v~~~  247 (369)
                      +++.+|+|.|+|.+.|.....+.. ..|.|...
T Consensus       241 ~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~v~~~  273 (291)
T 2gki_A          241 SVQAEDLAVYYCKQSYYHMYTFGSGTKLEIKHH  273 (291)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEECCCEEEEEECC
T ss_pred             CCCHHHCEEEEEEEccCCceEEcCCEEEEEEee
Confidence            999999999999999976544443 34555443

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=98.67  E-value=9e-08  Score=91.53  Aligned_cols=96  Identities=17%  Similarity=0.251  Sum_probs=66.2

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCe--E---eeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK--I---IANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      ..|..+.+.+|+.+.|.|.+.|.|.+.+.|++++.  .   +.............++..........|.|.+++.+|+|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   84 (523)
T 2rcj_C            5 TQPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESD   84 (523)
T ss_pred             ccCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEE
Confidence            44678899999999999999999999999999641  1   111000000011234443333456689999999999999


Q ss_pred             EEEEEEeCCce---EEEEEEEEEe
Q psy12695        225 YTCRAKNGAGE---VFTNISLNVI  245 (369)
Q Consensus       225 Y~C~a~n~~g~---~~~~~~l~v~  245 (369)
                      |.|.|.|..|.   ....+.|.|.
T Consensus        85 Y~C~a~n~~g~~~~~~~~~~l~V~  108 (523)
T 2rcj_C           85 YYCASWNSSDNSYVFGTGTKVTVL  108 (523)
T ss_pred             EEEEEccCCCccccccCceEEEec
Confidence            99999998763   2344667774

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=98.67  E-value=1e-07  Score=85.52  Aligned_cols=87  Identities=21%  Similarity=0.270  Sum_probs=66.2

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCC---CC-eEEEEeCCeEeeecccccccCCcceEEE---EeecceeeEEEcccCCCCCE
Q psy12695        151 ITPDVTAEENENVTLSCRATGSP---VP-KIKWIFKEKIIANISSGLANMNKRQYII---KTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p---~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~I~~v~~~D~G  223 (369)
                      .+....+.+|+.+.|.|.+.|.|   .| .+.|++++..+.....       ..+..   ......+.|.|.+++.+|+|
T Consensus       234 ~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~-------~~~~~~~~~~~~~~~~L~I~~v~~~D~G  306 (329)
T 3oq3_B          234 LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDF-------GVYSILTSSGGITEATLYFENVTEEYIG  306 (329)
T ss_dssp             CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCS-------SEEEEEEEETTEEEEEEEESSCCGGGTT
T ss_pred             cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCC-------ceeeeecccCceeEeEEEEEeccHHHCC
Confidence            34557889999999999999998   77 8899999876432111       11110   00113578999999999999


Q ss_pred             -EEEEEEEeCCceEEEEEEEEE
Q psy12695        224 -IYTCRAKNGAGEVFTNISLNV  244 (369)
Q Consensus       224 -~Y~C~a~n~~g~~~~~~~l~v  244 (369)
                       .|+|.|.|..|.....+.|.|
T Consensus       307 ~~Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          307 NTYTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             CEEEEEEECSSCEEEEEEEEEE
T ss_pred             CcEEEEEEecCCceEEEEEEEe
Confidence             999999999999988888776

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.66  E-value=2e-08  Score=90.12  Aligned_cols=87  Identities=25%  Similarity=0.392  Sum_probs=68.7

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ...+.+|+.+.|.|.+.|.|.+.+.|++++..+.......        ..........|.|.+++.+|+|.|.|.+.|..
T Consensus       132 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~--------~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  203 (334)
T 1ry7_B          132 LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG--------GIKLRHQQWSLVMESVVPSDRGNYTCVVENKF  203 (334)
T ss_dssp             EEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTT--------CCCCCTTTTEEEECSCCGGGCCCEEEEEEETT
T ss_pred             eEEecCCCcEEEEEEccCCCCCeEEEEECCEECccccccc--------ceecccceEEEEECCCCcccCEEEEEEEEeCC
Confidence            4678899999999999999999999999987664322110        00112235689999999999999999999999


Q ss_pred             ceEEEEEEEEEeecC
Q psy12695        234 GEVFTNISLNVIKVE  248 (369)
Q Consensus       234 g~~~~~~~l~v~~~~  248 (369)
                      |.....+.|.|...+
T Consensus       204 g~~~~~~~l~V~~~~  218 (334)
T 1ry7_B          204 GSIRQTYTLDVLERS  218 (334)
T ss_dssp             EEEEEEEEEEEECCC
T ss_pred             CCEEEEEEEEEecCC
Confidence            999888999987643

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=98.66  E-value=7.4e-08  Score=83.00  Aligned_cols=80  Identities=24%  Similarity=0.302  Sum_probs=66.7

Q ss_pred             CCCCeeeccCCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEE
Q psy12695        151 ITPDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA  229 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  229 (369)
                      .+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...                 .....|.|.+++.+|+|.|.|.+
T Consensus        88 ~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~-----------------~~~~~l~i~~~~~~d~G~Y~C~~  150 (262)
T 3rjd_A           88 QVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF-----------------HWNSNLTILKTNISHNGTYHCSG  150 (262)
T ss_dssp             EESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----------------EECCCEEESSCCGGGCEEEEEEE
T ss_pred             cCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc-----------------CCCCeEEEEECChhhCEEEEEEE
Confidence            3455678899999999999 78888899999998766421                 12467999999999999999999


Q ss_pred             EeCCceEEEEEEEEEeec
Q psy12695        230 KNGAGEVFTNISLNVIKV  247 (369)
Q Consensus       230 ~n~~g~~~~~~~l~v~~~  247 (369)
                      .|..+..+..+.|.|...
T Consensus       151 ~n~~~~~~~~~~l~V~~~  168 (262)
T 3rjd_A          151 MGKHRYTSAGISVTVKEL  168 (262)
T ss_dssp             ESSSEEEEECEEEEEECS
T ss_pred             eCCCCccccceEEEeccC
Confidence            999988888888888764

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=98.66  E-value=4.6e-08  Score=72.55  Aligned_cols=77  Identities=21%  Similarity=0.321  Sum_probs=54.0

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCC--CCeEEEEeCC--eEeeecccccccCCcceEEEEe--ecceeeEEEcccCCCCCE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSP--VPKIKWIFKE--KIIANISSGLANMNKRQYIIKT--INSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G  223 (369)
                      ..|..+.+.+|++++|.|.+.+.+  .+.+.|+++.  ......     .....++....  ......|.|.+++.+|+|
T Consensus         5 q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~-----~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG   79 (108)
T 2coq_A            5 QTPRIATKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQT-----ISIGGRYSETVDEGSNSASLTIRDLRVEDSG   79 (108)
T ss_dssp             EECSEEEECTTCCEEEEEEECCSSEEEEEEEEEEEETTCCCEEE-----CCCBTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             eCCceEEEcCCCCEEEEeEeCCCcCCCCEEEEEEcCCCCCcEEE-----EEeCCceEEEEcCCCCEEEEEECCCCcccCE
Confidence            346778899999999999998764  5679999863  211000     00122443322  234678999999999999


Q ss_pred             EEEEEEEe
Q psy12695        224 IYTCRAKN  231 (369)
Q Consensus       224 ~Y~C~a~n  231 (369)
                      .|.|.+.+
T Consensus        80 ~Y~C~~~~   87 (108)
T 2coq_A           80 TYKCKAYR   87 (108)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            99999987

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.66  E-value=1.1e-07  Score=79.85  Aligned_cols=86  Identities=12%  Similarity=0.261  Sum_probs=57.7

Q ss_pred             eeccCCeEEEEEEeeCCCCCeEEEEeC-CeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695        156 TAEENENVTLSCRATGSPVPKIKWIFK-EKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG  234 (369)
Q Consensus       156 ~~~~G~~~~l~C~~~g~p~p~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g  234 (369)
                      .+.+|+.+.|.|.+.|.|.|.+.|+++ +..+...........       .........+..+..+|.|.|+|.|.|..|
T Consensus       127 ~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~~-------~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g  199 (222)
T 3sbw_C          127 VDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKR-------EEKLFNVTSTLRINTTTNEIFYCTFRRLDP  199 (222)
T ss_dssp             EETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC-----------CEEEEEEEEEECCTTCEEEEEEEETTT
T ss_pred             eecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceEEEcC-------CCCCEEEEEEEEEeccCCcEEEEEEEeCcc
Confidence            567899999999999999999999998 433322110000000       000011122224567899999999999999


Q ss_pred             eEEEEEEEEEeecC
Q psy12695        235 EVFTNISLNVIKVE  248 (369)
Q Consensus       235 ~~~~~~~l~v~~~~  248 (369)
                      .....+.|.|...+
T Consensus       200 ~~~~~~~l~v~~~p  213 (222)
T 3sbw_C          200 EENHTAELVIPELP  213 (222)
T ss_dssp             TEEEEEEEECCCC-
T ss_pred             ceeeEEEEEecCCc
Confidence            99999999887554

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.66  E-value=6.2e-08  Score=80.88  Aligned_cols=81  Identities=19%  Similarity=0.291  Sum_probs=57.8

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--eEee---ecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEE
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKE--KIIA---NISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYT  226 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  226 (369)
                      |..+.+.+|+.++|.|.+.+.|.+.+.|++++  ..+.   ............++..........|.|.+++.+|+|.|.
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            67788999999999999999888899999853  2211   100000001123455544556678999999999999999


Q ss_pred             EEEEeC
Q psy12695        227 CRAKNG  232 (369)
Q Consensus       227 C~a~n~  232 (369)
                      |.+.|.
T Consensus        86 C~~~n~   91 (212)
T 1nfd_E           86 CLSSYG   91 (212)
T ss_dssp             EEEEET
T ss_pred             EEEEcc
Confidence            999973

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.66  E-value=7.4e-08  Score=81.72  Aligned_cols=94  Identities=15%  Similarity=0.246  Sum_probs=62.9

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCC-C-eEEEEeCC--eE---eeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        152 TPDVTAEENENVTLSCRATGSPV-P-KIKWIFKE--KI---IANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~-p-~i~W~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |..+.+.+|+.++|.|.+.+.+. + .+.|++++  ..   +.............++..........|.|.+++.+|+|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            67788999999999999988654 4 69999863  11   111110000111234554444556789999999999999


Q ss_pred             EEEEEEeCCce---EEEEEEEEEe
Q psy12695        225 YTCRAKNGAGE---VFTNISLNVI  245 (369)
Q Consensus       225 Y~C~a~n~~g~---~~~~~~l~v~  245 (369)
                      |.|.+.|..+.   ....+.|.|.
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~  129 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVL  129 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBC
T ss_pred             EEEEEEcCCcceeEecCCEEEEEe
Confidence            99999999872   2223455553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.66  E-value=4.4e-08  Score=81.16  Aligned_cols=94  Identities=15%  Similarity=0.131  Sum_probs=74.2

Q ss_pred             ceEEEecCCCCCccCCCC--CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN  121 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N  121 (369)
                      .+.++.+++.++.++. +  ...++.|+|++|+|.   ...|.++++|+.|+|++|+|+...+..|..+++|+.|+|++|
T Consensus        68 L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n  146 (197)
T 4ezg_A           68 IKDLTINNIHATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN  146 (197)
T ss_dssp             CSEEEEESCCCSCCGG-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred             CCEEEccCCCCCcchh-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence            5678888888876653 3  357899999999976   567888999999999999998866677888899999999999


Q ss_pred             c-eecccCCcccccCcCcccccc
Q psy12695        122 P-IQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       122 ~-l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      . ++.++  .|..+++|...++.
T Consensus       147 ~~i~~~~--~l~~l~~L~~L~l~  167 (197)
T 4ezg_A          147 GAITDIM--PLKTLPELKSLNIQ  167 (197)
T ss_dssp             TBCCCCG--GGGGCSSCCEEECT
T ss_pred             CCccccH--hhcCCCCCCEEECC
Confidence            7 88776  57777776655543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.66  E-value=2e-08  Score=96.63  Aligned_cols=83  Identities=20%  Similarity=0.337  Sum_probs=69.0

Q ss_pred             CCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeChhhccCCcccCeeeccCCcccccCCccccccccccccc
Q psy12695         38 TCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELK  117 (369)
Q Consensus        38 ~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~  117 (369)
                      .|.|.   ..+.+++++++|+.+|..++..++.|+|++|+|..-. ..+++|+.|+|++|+|+.||.  |..  +|+.|+
T Consensus        55 ~C~~~---~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~  126 (571)
T 3cvr_A           55 ECLIN---QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE--LPA--SLKHLD  126 (571)
T ss_dssp             HHHHT---TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEE
T ss_pred             ccccC---CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch--hhc--CCCEEE
Confidence            45543   3678999999999999988899999999999987433 567889999999999999887  554  888899


Q ss_pred             ccccceecccC
Q psy12695        118 LSGNPIQKITH  128 (369)
Q Consensus       118 L~~N~l~~~~~  128 (369)
                      |++|.|+.++.
T Consensus       127 Ls~N~l~~lp~  137 (571)
T 3cvr_A          127 VDNNQLTMLPE  137 (571)
T ss_dssp             CCSSCCSCCCC
T ss_pred             CCCCcCCCCCC
Confidence            99998888876

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.65  E-value=3.1e-08  Score=93.76  Aligned_cols=108  Identities=31%  Similarity=0.573  Sum_probs=92.9

Q ss_pred             CCCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccc
Q psy12695         33 AECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDS  109 (369)
Q Consensus        33 ~~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~  109 (369)
                      .+||..|.|...  .+.++|++++|+.||..+|..++.|+|++|+|.   +.+|.++++|++|+|++|+|+.+.+.+|.+
T Consensus         1 ~~Cp~~C~C~~~--~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~   78 (477)
T 2id5_A            1 TGCPPRCECSAQ--DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN   78 (477)
T ss_dssp             CCCSTTCEEETT--TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             CcccCCCeECCC--CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC
Confidence            379999999843  358999999999999999999999999999955   568899999999999999999988888999


Q ss_pred             ccccccccccccceecccCCcccccCcCccccc
Q psy12695        110 ILELRELKLSGNPIQKITHEAFINVPKLNLEDF  142 (369)
Q Consensus       110 l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~  142 (369)
                      +++|+.|+|++|.|+.++.+.|.++++|...++
T Consensus        79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            999999999999998888888887777655443

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=98.65  E-value=3.7e-08  Score=88.37  Aligned_cols=82  Identities=20%  Similarity=0.235  Sum_probs=62.2

Q ss_pred             eeeccCCeEEEEEEeeCCC-CCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC-
Q psy12695        155 VTAEENENVTLSCRATGSP-VPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG-  232 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p-~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~-  232 (369)
                      ..+.+|+.+.|.|.+.|.| .|.+.|++++..+...        ..++...    .+.|.|.+++.+|+|.|+|.|.|. 
T Consensus       138 ~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~--------~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~  205 (329)
T 3oq3_B          138 LGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIID--------GTKYSQS----GQNLIIHNPELEDSGRYDCYVHYDD  205 (329)
T ss_dssp             TTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCS--------SSSEEEE----TTEEEECSCCGGGCEEEEEEEEECC
T ss_pred             eEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCC--------CceEecC----CCEEEEeecChhhCEEEEEEEEecc
Confidence            3467899999999999999 8999999999876321        1122221    468999999999999999999997 


Q ss_pred             -CceE----EEEEEEEEeecC
Q psy12695        233 -AGEV----FTNISLNVIKVE  248 (369)
Q Consensus       233 -~g~~----~~~~~l~v~~~~  248 (369)
                       .|..    +..+.|.|...+
T Consensus       206 ~~g~~~~~~s~~~~l~V~~~~  226 (329)
T 3oq3_B          206 VRIKNDIVVSRCKILTVIPSQ  226 (329)
T ss_dssp             TTSSSCEEEEEEEEEEEECCC
T ss_pred             cCCCceeEEEeeEEEEEECCC
Confidence             5443    233677777655

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.65  E-value=9.3e-08  Score=83.87  Aligned_cols=98  Identities=19%  Similarity=0.292  Sum_probs=65.4

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEe--CCeEee---ecccccccCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIF--KEKIIA---NISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      +...+..+.+.+|++++|.|.+.+.| +.+.|++  ++..+.   ............++..........|.|.+++.+|+
T Consensus       165 ~~~~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds  243 (282)
T 1qok_A          165 LTQSPAIMSASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDA  243 (282)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EecCCCEEEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHC
Confidence            34446677899999999999999999 8999999  443221   11110001112345444445567899999999999


Q ss_pred             EEEEEEEEeCCceEE-EEEEEEEee
Q psy12695        223 GIYTCRAKNGAGEVF-TNISLNVIK  246 (369)
Q Consensus       223 G~Y~C~a~n~~g~~~-~~~~l~v~~  246 (369)
                      |.|+|.+.|..+... ....|.|..
T Consensus       244 G~Y~C~a~~~~~~~fg~gt~l~V~~  268 (282)
T 1qok_A          244 ATYYCQQRSSYPLTFGAGTKLELKR  268 (282)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             EEEEEEEeeCCCceEeCCEEEEEec
Confidence            999999988654332 335666654

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=98.65  E-value=6.1e-08  Score=74.17  Aligned_cols=81  Identities=22%  Similarity=0.266  Sum_probs=54.6

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCC-CCCeEEEEeCCeE---eeecccccccCCcceEEE-----EeecceeeEEEcccCCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGS-PVPKIKWIFKEKI---IANISSGLANMNKRQYII-----KTINSLSNLTIVAVTMS  220 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~L~I~~v~~~  220 (369)
                      ..+..+.+.+|++++|.|.+.+. +.+.+.|++++..   +.......   ...++..     ........|.|.+++.+
T Consensus         8 q~p~~~~v~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~li~~~~~~---~~~r~~~~~~~~~~~~~~~~L~I~~v~~~   84 (127)
T 2jju_A            8 QPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEG---HFPRVTTVSELTKRNNLDFSISISNITPA   84 (127)
T ss_dssp             CCCSEEEEETTSCEEECCEESCCCSCCCEEEEECSSTTCEEEEESSSS---CCTTEEEC-------CCBCCEEECSCCGG
T ss_pred             eeCCeEEEeCCCCEEEEEEEeCCCCCCEEEEEecCCCCcEEEEECCCC---ccCcEEeeEeeeecCCCEEEEEECCCCHH
Confidence            44567899999999999999775 5678999997521   11111100   0012221     11123568999999999


Q ss_pred             CCEEEEEEEEeCC
Q psy12695        221 DSGIYTCRAKNGA  233 (369)
Q Consensus       221 D~G~Y~C~a~n~~  233 (369)
                      |+|.|.|.+.+..
T Consensus        85 DsG~Y~C~~~~~~   97 (127)
T 2jju_A           85 DAGTYYCVKFRKG   97 (127)
T ss_dssp             GCEEEEEEEEECC
T ss_pred             HCEEEEEEEEcCC
Confidence            9999999998864

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=98.64  E-value=1.3e-07  Score=70.83  Aligned_cols=82  Identities=22%  Similarity=0.377  Sum_probs=55.7

Q ss_pred             CCCCeeeccCCeEEEEEEeeCC-CCCeEEEEeCCe--------Eeeeccc-cc----ccCCcceEEEEe--ecceeeEEE
Q psy12695        151 ITPDVTAEENENVTLSCRATGS-PVPKIKWIFKEK--------IIANISS-GL----ANMNKRQYIIKT--INSLSNLTI  214 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~~--------~~~~~~~-~~----~~~~~~~~~~~~--~~~~~~L~I  214 (369)
                      .|..+.+.+|++++|.|.+.+. +...+.|+++..        .+..... ..    ......++.+..  ......|+|
T Consensus         4 ~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (115)
T 2atp_B            4 TPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSI   83 (115)
T ss_dssp             ECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEE
T ss_pred             CCCCEEEcCCCcEEEEEEecCCCCcccEEEEEeCCCCCCCccEEEEEEeCCCCeEecCCCccCcEEEEEeCCCCEEEEEE
Confidence            3567889999999999999765 466799998542        1111111 00    011234555544  334568999


Q ss_pred             cccCCCCCEEEEEEEEeC
Q psy12695        215 VAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       215 ~~v~~~D~G~Y~C~a~n~  232 (369)
                      .+++.+|+|.|.|.+.+.
T Consensus        84 ~~~~~~DsG~Y~C~~~~~  101 (115)
T 2atp_B           84 MNVKPEDSDFYFCATVGS  101 (115)
T ss_dssp             CSCCGGGCEEEEEEEECS
T ss_pred             CCCCHHHCEEEEEeEccC
Confidence            999999999999998753

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=98.64  E-value=1.6e-07  Score=71.74  Aligned_cols=94  Identities=20%  Similarity=0.289  Sum_probs=60.9

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCCC----eEEEEeCCe-----Eeeec--cccc-ccC---CcceEEEEee---------
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPVP----KIKWIFKEK-----IIANI--SSGL-ANM---NKRQYIIKTI---------  206 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~p----~i~W~~~~~-----~~~~~--~~~~-~~~---~~~~~~~~~~---------  206 (369)
                      .+..+.+.+|++++|.|.+.+.+.+    .+.|++...     .+...  .... ...   -..++.+...         
T Consensus         8 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~   87 (128)
T 3r0n_A            8 VLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTE   87 (128)
T ss_dssp             CCSEEECCTTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCC
T ss_pred             cCCeEEEEcCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEeccccccccccc
Confidence            3567889999999999999887665    799999631     11100  0000 000   1123332211         


Q ss_pred             --cceeeEEEcccCCCCCEEEEEEEEe-CCceEEEEEEEEE
Q psy12695        207 --NSLSNLTIVAVTMSDSGIYTCRAKN-GAGEVFTNISLNV  244 (369)
Q Consensus       207 --~~~~~L~I~~v~~~D~G~Y~C~a~n-~~g~~~~~~~l~v  244 (369)
                        .....|.|.+++.+|+|.|.|.+.+ ..|.....+.|.|
T Consensus        88 ~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L~V  128 (128)
T 3r0n_A           88 AELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV  128 (128)
T ss_dssp             CBCSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             cCCCCeEEEEccCCchhCeEEEEEEEeCCCCCcccEEEEEC
Confidence              1245899999999999999998754 6688777777754

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.63  E-value=4.9e-08  Score=80.11  Aligned_cols=66  Identities=15%  Similarity=0.168  Sum_probs=51.3

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ...+.+|+.++|.|.+.+. .+.+.|++++..+...             .......+.|.|.+++.+|+|.|.|.|.|..
T Consensus       107 ~~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~-------------~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          107 GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQ-------------RGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             CSEEETTCEEEEEEECSSS-CSEEEEEEESSSCEEE-------------EEECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             CCccccCCEEEEEEEcCCC-CCEEEEEECCcccccc-------------ccCCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence            4568899999999998764 5789999988654320             0122346789999999999999999998864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.63  E-value=7.4e-08  Score=86.53  Aligned_cols=96  Identities=22%  Similarity=0.349  Sum_probs=79.4

Q ss_pred             CceEEEecCCCCCccCCCCC--CCccEEEeecceeC---h---------hhccCCcccCeeeccCCcccccCCccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQLD--VGTQVLDLSDNFLD---R---------YTFRKLINLVELDLSYNQIQFVPSHILDSIL  111 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~~~--~~~~~L~l~~n~i~---~---------~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~  111 (369)
                      ..+.++.+++.++.+|..+.  ..++.|+|++|++.   +         +.|.++++|+.|+|++|+|+.+|. .|..++
T Consensus       128 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~  206 (328)
T 4fcg_A          128 GLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA-SIANLQ  206 (328)
T ss_dssp             TCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG-GGGGCT
T ss_pred             CCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH-hhcCCC
Confidence            35789999999999998763  57999999998732   2         236679999999999999999876 489999


Q ss_pred             ccccccccccceecccCCcccccCcCcccccc
Q psy12695        112 ELRELKLSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       112 ~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      +|+.|+|++|.++.+++ .|..+++|...++.
T Consensus       207 ~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~Ls  237 (328)
T 4fcg_A          207 NLKSLKIRNSPLSALGP-AIHHLPKLEELDLR  237 (328)
T ss_dssp             TCCEEEEESSCCCCCCG-GGGGCTTCCEEECT
T ss_pred             CCCEEEccCCCCCcCch-hhccCCCCCEEECc
Confidence            99999999999999876 47788887665554

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=98.62  E-value=2.2e-07  Score=71.81  Aligned_cols=99  Identities=20%  Similarity=0.213  Sum_probs=64.8

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCC-CCeEEEEeCC--e---Eeeecccc-cccCCcceEEEEe--ecceeeEEEcccCCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSP-VPKIKWIFKE--K---IIANISSG-LANMNKRQYIIKT--INSLSNLTIVAVTMS  220 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p-~p~i~W~~~~--~---~~~~~~~~-~~~~~~~~~~~~~--~~~~~~L~I~~v~~~  220 (369)
                      ..+..+.+.+|++++|.|.+.+.. ...+.|+++.  +   .+...... .......+|.+..  ......|.|.+++.+
T Consensus        14 Q~p~~v~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~   93 (134)
T 3bik_B           14 FYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRN   93 (134)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEECSCCGG
T ss_pred             ECCCeEEEeCCCCEEEEEEeCCCCCCcEEEEEEcCCCCCceEEEEEcCCCCCcccCCCEEEEecCCCCEEEEEECCCChH
Confidence            346778899999999999997654 4679999852  2   11111111 0111234565532  344568999999999


Q ss_pred             CCEEEEEEEEeCCce----EEEEEEEEEeecC
Q psy12695        221 DSGIYTCRAKNGAGE----VFTNISLNVIKVE  248 (369)
Q Consensus       221 D~G~Y~C~a~n~~g~----~~~~~~l~v~~~~  248 (369)
                      |+|.|.|.+.+..+.    ....+.|.|....
T Consensus        94 Dsg~Y~C~~~~~~~~~~~~~~~gt~L~V~~~~  125 (134)
T 3bik_B           94 DSGIYLCGAISLHPKAKIEESPGAELVVTERI  125 (134)
T ss_dssp             GCEEEEEEEEECSSSCEEEECCCEEEEEECCC
T ss_pred             HCEEEEEEEEeCCCCceEEEcCCEEEEEeCCC
Confidence            999999999876432    2234677776544

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=98.62  E-value=1.1e-07  Score=83.34  Aligned_cols=84  Identities=21%  Similarity=0.406  Sum_probs=65.8

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .|.+...+..+.+.+|+.++|.|.+.|    .+.|++++..+..                .....+.|.|.+++.+|+|.
T Consensus        12 ~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~~----------------~~~~~~~L~i~~~~~~d~G~   71 (290)
T 2o26_X           12 PPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEM----------------VENKKNEWIQEKAEATRTGT   71 (290)
T ss_dssp             CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSSCE----------------EEECSSEEEETTCCGGGCEE
T ss_pred             CCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCcceee----------------ecCCCceEEEeccCHHhCeE
Confidence            456666678889999999999999988    8999998865410                01123789999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeecCCcc
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKVETAV  251 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~~~~~  251 (369)
                      |+|.+.|  |. ...+.|.|...+...
T Consensus        72 Y~C~~~n--g~-~~~~~l~V~~~~~~~   95 (290)
T 2o26_X           72 YTCSNSN--GL-TSSIYVFVRDPAKLF   95 (290)
T ss_dssp             EEEEESS--SC-EEEEEEEEECSSCCB
T ss_pred             EEEEeeC--Cc-cEEEEEEEeCCCccc
Confidence            9999999  54 677888887766544

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=98.62  E-value=9.2e-08  Score=72.31  Aligned_cols=85  Identities=22%  Similarity=0.300  Sum_probs=55.1

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCC-CCCeEEEEeCCeE---eeecccccccCCcceEEE---EeecceeeEEEcccCCC
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGS-PVPKIKWIFKEKI---IANISSGLANMNKRQYII---KTINSLSNLTIVAVTMS  220 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~L~I~~v~~~  220 (369)
                      +...+..+.+.+|++++|.|.+.+. +.+.+.|++++..   +........ ..+.....   ........|.|.+++.+
T Consensus        10 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~-~~r~~~~~~~~~~~~~~~~L~I~~v~~~   88 (120)
T 2yz1_A           10 VTQPEKSVSVAAGDSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGEH-FPRVTNVSDATKRNNMDFSIRISNVTPE   88 (120)
T ss_dssp             EECCSSEEEECTTCCEEECCEESCCCSCCCEEEEESSSTTCEEEEEECEEC-TTTCCSEEECCBSSTTBCCEEECSCCGG
T ss_pred             EECCCceEEEeCCCCEEEEeEECCCCCCcEEEEEcCCCCCcEEEEEcCCcc-cCcccceeeccccCCCeEEEEECCCCHH
Confidence            3445677889999999999999765 5678999997521   111110000 00000000   01123468999999999


Q ss_pred             CCEEEEEEEEeCC
Q psy12695        221 DSGIYTCRAKNGA  233 (369)
Q Consensus       221 D~G~Y~C~a~n~~  233 (369)
                      |+|.|.|.+.+..
T Consensus        89 DsG~Y~C~~~~~~  101 (120)
T 2yz1_A           89 DAGTYYCVKFQKG  101 (120)
T ss_dssp             GCEEEEEEEEECC
T ss_pred             HCEEEEEEEEcCC
Confidence            9999999998764

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=98.62  E-value=1.9e-07  Score=70.08  Aligned_cols=82  Identities=13%  Similarity=0.243  Sum_probs=54.2

Q ss_pred             CCCeeeccCCeEEEEEEeeCC---CCCeEEEEeCC--e---Eeeeccc-c-c-c-cCCcceEEEEeecc--eeeEEEccc
Q psy12695        152 TPDVTAEENENVTLSCRATGS---PVPKIKWIFKE--K---IIANISS-G-L-A-NMNKRQYIIKTINS--LSNLTIVAV  217 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~---p~p~i~W~~~~--~---~~~~~~~-~-~-~-~~~~~~~~~~~~~~--~~~L~I~~v  217 (369)
                      +..+.+.+|++++|.|.+.+.   +...+.|++..  .   .+..... . . . .....++.......  ...|+|.++
T Consensus         5 ~~~~~~~~G~~v~L~C~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~   84 (116)
T 3bj9_1            5 PPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISEL   84 (116)
T ss_dssp             CSEEEEETTCCEEEEEEECSSSCGGGCCEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCcEEEcCCCcEEEEEEeecCccCCCceEEEEEeCCCCCcEEEEEEecCCCceeCccCCCcEEEEecCCCceEEEEECCC
Confidence            345889999999999999754   45679999853  1   1221110 0 0 0 01124555543332  348999999


Q ss_pred             CCCCCEEEEEEEEeCC
Q psy12695        218 TMSDSGIYTCRAKNGA  233 (369)
Q Consensus       218 ~~~D~G~Y~C~a~n~~  233 (369)
                      +.+|+|.|.|.+.+..
T Consensus        85 ~~~DsG~Y~C~~~~~~  100 (116)
T 3bj9_1           85 QPEDEAMYYCAMGARS  100 (116)
T ss_dssp             CGGGCEEEEEEECCSS
T ss_pred             ChhHCEEEEEEEeCCC
Confidence            9999999999998754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.62  E-value=4.8e-08  Score=87.78  Aligned_cols=93  Identities=20%  Similarity=0.179  Sum_probs=80.2

Q ss_pred             CceEEEecCCCCCccCCCCCC---CccEEEeecce--eChhhccCCcccC-eeeccCCcccccCCccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQLDV---GTQVLDLSDNF--LDRYTFRKLINLV-ELDLSYNQIQFVPSHILDSILELRELKLS  119 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~~~~---~~~~L~l~~n~--i~~~~f~~l~~L~-~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  119 (369)
                      ..+.++..+++++.||.....   .++.|+|.+|-  |..++|.++.+|+ .|+|.+ .++.|++++|.++.+|+.|+|+
T Consensus       227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~  305 (329)
T 3sb4_A          227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLAT  305 (329)
T ss_dssp             TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEEC
T ss_pred             CCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeC
Confidence            356788888889999987643   58899998875  6689999999999 999988 8999999999999999999999


Q ss_pred             ccceecccCCcccccCcCcc
Q psy12695        120 GNPIQKITHEAFINVPKLNL  139 (369)
Q Consensus       120 ~N~l~~~~~~~f~~l~~l~~  139 (369)
                      +|.++.+..++|.++++|..
T Consensus       306 ~n~i~~I~~~aF~~~~~L~~  325 (329)
T 3sb4_A          306 GDKITTLGDELFGNGVPSKL  325 (329)
T ss_dssp             SSCCCEECTTTTCTTCCCCE
T ss_pred             CCccCccchhhhcCCcchhh
Confidence            99999999999998877654

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.61  E-value=1.6e-07  Score=80.37  Aligned_cols=99  Identities=20%  Similarity=0.339  Sum_probs=65.1

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC-----eEeeecc--ccc-c--cCCcceEEEEe-ecceeeEEEcc
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANIS--SGL-A--NMNKRQYIIKT-INSLSNLTIVA  216 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~-----~~~~~~~--~~~-~--~~~~~~~~~~~-~~~~~~L~I~~  216 (369)
                      +...+..+.+.+|+.++|.|.+.+.+.+.+.|++..     ..+....  ... .  .....++.+.. ......|.|.+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~   83 (246)
T 4dzb_B            4 VSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTS   83 (246)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECS
T ss_pred             cEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECC
Confidence            334566788999999999999999999999999821     1111111  000 0  01113444432 24466899999


Q ss_pred             cCCCCCEEEEEEEEeCCc----eEEEEEEEEEee
Q psy12695        217 VTMSDSGIYTCRAKNGAG----EVFTNISLNVIK  246 (369)
Q Consensus       217 v~~~D~G~Y~C~a~n~~g----~~~~~~~l~v~~  246 (369)
                      ++.+|+|.|.|.+.|..+    .......|.|..
T Consensus        84 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  117 (246)
T 4dzb_B           84 AHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLE  117 (246)
T ss_dssp             CCGGGCEEEEEEECCSSGGGCCEECCCEEEEEES
T ss_pred             CCHHHCEEEEEEEecCCCCcceEEcCCEEEEEec
Confidence            999999999999987643    233445666664

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=98.61  E-value=3.9e-08  Score=82.86  Aligned_cols=82  Identities=17%  Similarity=0.258  Sum_probs=59.5

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ...+.+|+.++|.|.+.+.|.+.+.|++++..+...          .   ......+.|.|.+++.+|+|.|+|.|.|..
T Consensus       114 ~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~----------~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          114 GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ----------H---QSGEHPANFSLGPVDLNVSGIYRCYGWYNR  180 (218)
T ss_dssp             CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS----------E---EECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc----------c---cCCCccCEEEEccCCcccCEEEEEEEEcCC
Confidence            457889999999997778888999999998654320          0   112235789999999999999999999864


Q ss_pred             c-----eEEEEEEEEEeecC
Q psy12695        234 G-----EVFTNISLNVIKVE  248 (369)
Q Consensus       234 g-----~~~~~~~l~v~~~~  248 (369)
                      +     ..+..+.|.|....
T Consensus       181 ~~~~~s~~S~~~~l~V~g~~  200 (218)
T 1uct_A          181 SPYLWSFPSNALELVVTDSI  200 (218)
T ss_dssp             STTEECCCCCCEEEEEC---
T ss_pred             CCCcCCCCCCcEEEEEecCC
Confidence            2     23445677776543

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=98.61  E-value=2e-07  Score=71.73  Aligned_cols=97  Identities=21%  Similarity=0.276  Sum_probs=60.4

Q ss_pred             CCCCeeeccCCeEEEEEEee-------CCCCCeEEEEeCCeE------eeeccccc--ccCCcceEEEEe--ecceeeEE
Q psy12695        151 ITPDVTAEENENVTLSCRAT-------GSPVPKIKWIFKEKI------IANISSGL--ANMNKRQYIIKT--INSLSNLT  213 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~-------g~p~p~i~W~~~~~~------~~~~~~~~--~~~~~~~~~~~~--~~~~~~L~  213 (369)
                      .|..+.+.+|+.++|.|.+.       +.....+.|++....      +.......  ......|+.+..  ..+...|.
T Consensus        12 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   91 (132)
T 1nko_A           12 MQSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLS   91 (132)
T ss_dssp             ECSEEEEETTCCEEECEEEECCCCTTTTTSCCEEEEEEC-----CCSCSEESCTTCCCCGGGTTTEEECSCGGGTBCCEE
T ss_pred             CCCEEEEcCCCeEEEEccccCCCccccCCCccEEEEEECCCCCCcccEEEeCCCccccccccCccEEEeCCCCCCceEEE
Confidence            45678899999999999997       345578999996532      11111000  001123554432  23456899


Q ss_pred             EcccCCCCCEEEEEEEEeCCceEE---EEEEEEEeec
Q psy12695        214 IVAVTMSDSGIYTCRAKNGAGEVF---TNISLNVIKV  247 (369)
Q Consensus       214 I~~v~~~D~G~Y~C~a~n~~g~~~---~~~~l~v~~~  247 (369)
                      |.+++.+|+|.|.|.+.+......   ..+.|.|...
T Consensus        92 I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~~l~V~~~  128 (132)
T 1nko_A           92 IRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTAL  128 (132)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEECTTSCEEEEEECC
T ss_pred             EcccCcccCeeEEEEEEcCCCcccccCCceEEEeccc
Confidence            999999999999999987642111   2355666543

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=98.61  E-value=3.5e-07  Score=68.51  Aligned_cols=82  Identities=15%  Similarity=0.308  Sum_probs=57.5

Q ss_pred             CCCeeeccCCeEEEEEEeeCC-CCCeEEEEeCC--e---Eeeeccc-c--cc-cCCcceEEEEeecceeeEEEcccCCCC
Q psy12695        152 TPDVTAEENENVTLSCRATGS-PVPKIKWIFKE--K---IIANISS-G--LA-NMNKRQYIIKTINSLSNLTIVAVTMSD  221 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~--~---~~~~~~~-~--~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D  221 (369)
                      |..+.+.+|++++|.|.+.+. +.+.+.|++..  .   .+..... .  .. ..-..++.+........|+|.+++.+|
T Consensus         8 p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~~D   87 (115)
T 2otu_A            8 SSSASFSLGASAKLTCTLSSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPED   87 (115)
T ss_dssp             CCCEECCTTCCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCCEEECCCCCEEEEEEecCCCCCeEEEEEEeCCCCCceEEEEEecCCceecCcccCCCEEEEccCCEEEEEECCCChhH
Confidence            677899999999999999765 56789999842  1   1221111 0  00 011345665555566789999999999


Q ss_pred             CEEEEEEEEeCC
Q psy12695        222 SGIYTCRAKNGA  233 (369)
Q Consensus       222 ~G~Y~C~a~n~~  233 (369)
                      +|.|.|.+.+..
T Consensus        88 sg~Y~C~~~~~~   99 (115)
T 2otu_A           88 EAIYICGVGDTI   99 (115)
T ss_dssp             CEEEEEEEEECC
T ss_pred             CEEEEEEEecCC
Confidence            999999998754

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=98.61  E-value=4.9e-08  Score=74.05  Aligned_cols=94  Identities=21%  Similarity=0.226  Sum_probs=63.3

Q ss_pred             CCeeeccCCeEEEEEEe-eCCCCCeEEEEeCCe-Eeeeccccc-----ccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        153 PDVTAEENENVTLSCRA-TGSPVPKIKWIFKEK-IIANISSGL-----ANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~-~g~p~p~i~W~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      ..+.+.+|++++|.|.. .......+.|+++.. .+.......     ... +.+..  .....+.|.|.+++.+|+|.|
T Consensus        12 ~pv~~~~G~~VtL~c~~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f-~~R~~--l~~~~~sL~I~nv~~~DsG~Y   88 (121)
T 2edo_A           12 VHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKF-KGRVR--LDPQSGALYISKVQKEDNSTY   88 (121)
T ss_dssp             BCCEEETTSCEEECCSSCCCSSEEEEEEEEETTEEEEEECSSCEEECSCTT-TTTCE--ECTTTCCEEESSCCGGGCSEE
T ss_pred             EEEEEEeCCCEEEeCCCCCCCceeEEEEEcCCCCeEEEEECcCCeEeChhc-CCcEE--EeCCCceEEEeCCCHHHCeEE
Confidence            44788999999999987 444456799999764 232211100     001 11222  223457899999999999999


Q ss_pred             EEEEEeCCc-eEEEEEEEEEeecCC
Q psy12695        226 TCRAKNGAG-EVFTNISLNVIKVET  249 (369)
Q Consensus       226 ~C~a~n~~g-~~~~~~~l~v~~~~~  249 (369)
                      .|.+.+..+ .....+.|.|....+
T Consensus        89 ~c~v~~~~~~~~~~~~~L~V~~~~~  113 (121)
T 2edo_A           89 IMRVLKKTGNEQEWKIKLQVLDPVP  113 (121)
T ss_dssp             EEEEEETTTEEEECCEECEEECCSC
T ss_pred             EEEEEcCCCcEEEEEEEEEEECCCC
Confidence            999988765 456678888877553

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.60  E-value=6.8e-08  Score=80.10  Aligned_cols=92  Identities=14%  Similarity=0.114  Sum_probs=61.4

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...|. ..+.+|++++|.|.+.+ +.+.+.|+|++..+......        .........+.|.|.+++.+|+|.|
T Consensus         9 P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~--------~~~~~~~~~~~l~I~~v~~~D~G~Y   78 (201)
T 1nkr_A            9 PSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLI--------GEHHDGVSKANFSISRMTQDLAGTY   78 (201)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEE--------CEEETTEEEEEEEESSCCGGGCEEE
T ss_pred             CeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceee--------eecCCCCceEEEEeccCCcccCeEE
Confidence            34444444 67889999999999974 77899999988654321100        0001112356899999999999999


Q ss_pred             EEEEEeCC-----ceEEEEEEEEEeec
Q psy12695        226 TCRAKNGA-----GEVFTNISLNVIKV  247 (369)
Q Consensus       226 ~C~a~n~~-----g~~~~~~~l~v~~~  247 (369)
                      .|.+.|..     ...+..+.|.|...
T Consensus        79 ~C~a~~~~~~~~~~~~s~~~~l~V~~~  105 (201)
T 1nkr_A           79 RCYGSVTHSPYQVSAPSDPLDIVIIGL  105 (201)
T ss_dssp             EEEEEBTTBTTCCCCCCCCEEEEEECS
T ss_pred             EEeEecCCCCccccCCCCCEEEEeecc
Confidence            99998753     12344566777653

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.60  E-value=2e-07  Score=78.20  Aligned_cols=95  Identities=21%  Similarity=0.255  Sum_probs=62.8

Q ss_pred             CCCeeeccCCeEEEEEEeeCCC--CCeEEEEeCC--eEeee---ccc--cc---ccCCcceEEEEee--cceeeEEEccc
Q psy12695        152 TPDVTAEENENVTLSCRATGSP--VPKIKWIFKE--KIIAN---ISS--GL---ANMNKRQYIIKTI--NSLSNLTIVAV  217 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~~~~~---~~~--~~---~~~~~~~~~~~~~--~~~~~L~I~~v  217 (369)
                      +..+.+.+|+.++|.|.+.|.|  .+.+.|++++  ..+..   ...  ..   ......++.+...  .....|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (219)
T 1c1e_H            7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNL   86 (219)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCC
Confidence            5667899999999999999876  6789999863  22210   000  00   0001234444322  34578999999


Q ss_pred             CCCCCEEEEEEEEeCCce----EEEEEEEEEee
Q psy12695        218 TMSDSGIYTCRAKNGAGE----VFTNISLNVIK  246 (369)
Q Consensus       218 ~~~D~G~Y~C~a~n~~g~----~~~~~~l~v~~  246 (369)
                      +.+|+|.|.|.+.|..+.    ....+.|.|..
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  119 (219)
T 1c1e_H           87 KNEDMATYFCARGTTIVRAMDYWGQGTSLTVSS  119 (219)
T ss_dssp             CGGGCEEEEEEEEETTTTEEEEECCCEEEEECC
T ss_pred             CcccCEEEEEEEeccCcccceeecCceEEEEec
Confidence            999999999999998742    22345666665

>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A

Probab=98.60  E-value=2.9e-07  Score=68.90  Aligned_cols=83  Identities=22%  Similarity=0.364  Sum_probs=57.4

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCC-CCCeEEEEeC--Ce----E-eeeccccc--cc--CCcceEEEEeecceeeEEEccc
Q psy12695        150 PITPDVTAEENENVTLSCRATGS-PVPKIKWIFK--EK----I-IANISSGL--AN--MNKRQYIIKTINSLSNLTIVAV  217 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~--~~----~-~~~~~~~~--~~--~~~~~~~~~~~~~~~~L~I~~v  217 (369)
                      ..|..+.+.+|++++|.|.+.+. +...+.|+++  ++    . +.......  ..  ....++..........|+|.++
T Consensus         5 q~p~~v~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~   84 (114)
T 2hp4_A            5 VSPLDRTWNLGETVELKCQVLLSNPTSGASWLFQPRGAAASPTFLLYLNQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDF   84 (114)
T ss_dssp             EECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEEESSSSCCCEEEEEESSSSCEECTTCCTTTEEEEEETTEEEEEESSC
T ss_pred             eCCCEEEEcCCCCEEEEEEeecCCCCceEEEEEECCCCCCCcEEEEEEcCCCccccCCCCcccEEEEecCCEEEEEECCC
Confidence            44677889999999999999754 3567999974  32    1 11111110  01  1134666655555678999999


Q ss_pred             CCCCCEEEEEEEEeC
Q psy12695        218 TMSDSGIYTCRAKNG  232 (369)
Q Consensus       218 ~~~D~G~Y~C~a~n~  232 (369)
                      +.+|+|.|.|.+.+.
T Consensus        85 ~~~Dsg~Y~C~~~~~   99 (114)
T 2hp4_A           85 RRENEGYYFCSALSN   99 (114)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             CHHHCEEEEEEEecC
Confidence            999999999999875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.60  E-value=1.2e-08  Score=101.50  Aligned_cols=87  Identities=21%  Similarity=0.275  Sum_probs=76.2

Q ss_pred             CceEEEecCCCCCccCCCC--CCCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCccccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN  121 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N  121 (369)
                      ..+.++.++|.|+.+|..+  ...++.|+|++|+|.  +..|.+|++|+.|+|++|.|+.||.. |..|++|+.|+|++|
T Consensus       248 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          248 FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGN  326 (727)
T ss_dssp             SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTS
T ss_pred             CCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCC
Confidence            3567999999999999876  357999999999977  56799999999999999999999886 999999999999999


Q ss_pred             ceecccCCcccc
Q psy12695        122 PIQKITHEAFIN  133 (369)
Q Consensus       122 ~l~~~~~~~f~~  133 (369)
                      +|+...+..|..
T Consensus       327 ~l~~~~p~~~~~  338 (727)
T 4b8c_D          327 PLEKQFLKILTE  338 (727)
T ss_dssp             CCCSHHHHHHHH
T ss_pred             ccCCCChHHHhh
Confidence            999877666543

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.60  E-value=1.6e-07  Score=81.13  Aligned_cols=98  Identities=19%  Similarity=0.281  Sum_probs=64.3

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCC--CCeEEEEeCC--eEe---eecc--cc---cccCCcceEEEEee--cceeeEEEcc
Q psy12695        151 ITPDVTAEENENVTLSCRATGSP--VPKIKWIFKE--KII---ANIS--SG---LANMNKRQYIIKTI--NSLSNLTIVA  216 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~~~---~~~~--~~---~~~~~~~~~~~~~~--~~~~~L~I~~  216 (369)
                      .|..+.+.+|++++|.|.+.|.|  .+.+.|++++  ...   ....  ..   .......++.+...  .....|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (256)
T 1nqb_A            6 QSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSS   85 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECc
Confidence            35678899999999999999876  6789999842  211   1110  00   00001234444332  3457899999


Q ss_pred             cCCCCCEEEEEEEEeCCce-----EEEEEEEEEeecC
Q psy12695        217 VTMSDSGIYTCRAKNGAGE-----VFTNISLNVIKVE  248 (369)
Q Consensus       217 v~~~D~G~Y~C~a~n~~g~-----~~~~~~l~v~~~~  248 (369)
                      ++.+|+|.|.|.+.|..|.     ....+.|.|...+
T Consensus        86 v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~  122 (256)
T 1nqb_A           86 LTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDI  122 (256)
T ss_dssp             CCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCC
T ss_pred             CChhhCEEEEEEEeeccCccceeEEcCceeeeecccc
Confidence            9999999999999998662     2234567666543

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=98.59  E-value=7.6e-08  Score=79.45  Aligned_cols=74  Identities=14%  Similarity=0.032  Sum_probs=44.8

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ...+.+|+.++|.|.+.+.| +.+.|++++..+.......       .........+.|.|.+++.+|+|.|.|.|.|..
T Consensus       108 ~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~-------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  179 (196)
T 2d3v_A          108 SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDS-------QLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRH  179 (196)
T ss_dssp             ---------CEEEEEESSCC-SEEEEEEC---CCEEEEEC-------EECTTSCEEEEEECCCCBTTBCEEEEEEEEETT
T ss_pred             CccccCCCcEEEEEEcCCCC-CEEEEEccCCccccccccc-------ccccCCCceeEEEeeecCcccCeeEEEEEEccC
Confidence            35788999999999999998 8999999987653211000       000001124689999999999999999999986


Q ss_pred             ce
Q psy12695        234 GE  235 (369)
Q Consensus       234 g~  235 (369)
                      +.
T Consensus       180 ~~  181 (196)
T 2d3v_A          180 IL  181 (196)
T ss_dssp             EE
T ss_pred             CC
Confidence            53

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.59  E-value=5e-08  Score=78.37  Aligned_cols=80  Identities=23%  Similarity=0.399  Sum_probs=60.6

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCC-CCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEE
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSP-VPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYT  226 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p-~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  226 (369)
                      +...+....+.+|+.+.|.|.+.+.| .+.+.|++++..+..                   ....+.|.+++.+|+|.|.
T Consensus         7 i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~-------------------~~~~~~~~~~~~~d~G~Y~   67 (170)
T 3ry4_A            7 LKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPT-------------------HTQPSYRFKANNNDSGEYT   67 (170)
T ss_dssp             EEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTT-------------------CCSSEEEEECCGGGCEEEE
T ss_pred             EEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEccc-------------------CccceEEEecccccCeEEE
Confidence            34446667899999999999999987 578999999876542                   1235677889999999999


Q ss_pred             EEEEeCCceEEEEEEEEEeecC
Q psy12695        227 CRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       227 C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      |.+.|..+.  ..+.|.|...+
T Consensus        68 C~~~~~~~s--~~~~l~v~~~~   87 (170)
T 3ry4_A           68 CQTGQTSLS--DPVHLTVLFEW   87 (170)
T ss_dssp             EEETTSBCC--CCEEEEEECCS
T ss_pred             EEEeCCCce--EeEEEEEECCc
Confidence            999976544  34666666543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.59  E-value=7.9e-08  Score=91.93  Aligned_cols=69  Identities=26%  Similarity=0.447  Sum_probs=33.9

Q ss_pred             CccEEEeecceeChhhccCC-cccCeeeccCCcccccCCcccccccccccccccccceecccCCcccccCc
Q psy12695         67 GTQVLDLSDNFLDRYTFRKL-INLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPK  136 (369)
Q Consensus        67 ~~~~L~l~~n~i~~~~f~~l-~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~  136 (369)
                      .++.|+|++|+|....+..+ ++|+.|+|++|+|+.||...+ .+++|+.|+|++|+|+.++...|..+++
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~  469 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTS  469 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccCHHHhccCCc
Confidence            34444444444443333333 355555555555555554433 4555555555555555555444444444

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.58  E-value=1.2e-07  Score=81.67  Aligned_cols=101  Identities=11%  Similarity=0.168  Sum_probs=66.2

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCC--CCCeEEEEeCC--e---Eeeecc-c----ccccCCcceEEEEe--ecceeeE
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGS--PVPKIKWIFKE--K---IIANIS-S----GLANMNKRQYIIKT--INSLSNL  212 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~--p~p~i~W~~~~--~---~~~~~~-~----~~~~~~~~~~~~~~--~~~~~~L  212 (369)
                      .+...+..+++.+|++++|.|.+.+.  +.+.+.|++..  .   .+.... .    ........++.+..  ......|
T Consensus         8 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   87 (256)
T 3juy_B            8 VQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYM   87 (256)
T ss_dssp             CEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEE
T ss_pred             EEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEE
Confidence            33445688999999999999999883  67789999743  1   111111 0    00001123454442  2345679


Q ss_pred             EEcccCCCCCEEEEEEEEeC------------CceEEEEEEEEEeec
Q psy12695        213 TIVAVTMSDSGIYTCRAKNG------------AGEVFTNISLNVIKV  247 (369)
Q Consensus       213 ~I~~v~~~D~G~Y~C~a~n~------------~g~~~~~~~l~v~~~  247 (369)
                      .|.+++.+|+|.|.|.+.|.            .+.....+.|.|...
T Consensus        88 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~  134 (256)
T 3juy_B           88 ELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSG  134 (256)
T ss_dssp             EECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSC
T ss_pred             EECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCC
Confidence            99999999999999999987            333444566777654

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.58  E-value=7.7e-08  Score=79.24  Aligned_cols=79  Identities=24%  Similarity=0.378  Sum_probs=60.0

Q ss_pred             CCCCeeeccCCeEEEEEE-eeCCCC-CeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695        151 ITPDVTAEENENVTLSCR-ATGSPV-PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~-~~g~p~-p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      .+..+.+.+|+.+.|.|. +.+.|. +.+.|++++..+.....      ...+   .....+.|.|.+++.+|+|.|.|.
T Consensus        14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~------~~~~---~~~~~~~L~i~~v~~~d~G~Y~C~   84 (201)
T 3s97_C           14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMD------KRRF---VSQTNGNLYIANVEASDKGNYSCF   84 (201)
T ss_dssp             CCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCS------SSEE---ECTTTCCEEESSCCGGGCEEEEEE
T ss_pred             CCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeC------CCeE---EEcCCCeEEECcCCcccCeEEEEE
Confidence            457789999999999999 889998 99999998865532111      1111   122356799999999999999999


Q ss_pred             EEeCCceEEE
Q psy12695        229 AKNGAGEVFT  238 (369)
Q Consensus       229 a~n~~g~~~~  238 (369)
                      +.|..+....
T Consensus        85 ~~~~~~~~~~   94 (201)
T 3s97_C           85 VSSPSITKSV   94 (201)
T ss_dssp             EEEGGGTEEE
T ss_pred             EEecCCCcch
Confidence            9997766543

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.58  E-value=2.7e-07  Score=79.66  Aligned_cols=96  Identities=17%  Similarity=0.240  Sum_probs=62.9

Q ss_pred             CCCeeeccCCeEEEEEEeeCCC--CCeEEEEeCC--e---Eeeecc-ccc---ccCCcceEEEEee--cceeeEEEcccC
Q psy12695        152 TPDVTAEENENVTLSCRATGSP--VPKIKWIFKE--K---IIANIS-SGL---ANMNKRQYIIKTI--NSLSNLTIVAVT  218 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~---~~~~~~-~~~---~~~~~~~~~~~~~--~~~~~L~I~~v~  218 (369)
                      +..+.+.+|+.++|.|.+.|.|  .+.+.|++++  .   .+.... ...   ......++.+...  .....|.|.+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   86 (257)
T 1f3r_B            7 SGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQ   86 (257)
T ss_dssp             ECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCC
Confidence            3456799999999999999885  6889999852  1   111100 000   0001234444332  345789999999


Q ss_pred             CCCCEEEEEEEEeCCc-------eE--EEEEEEEEeec
Q psy12695        219 MSDSGIYTCRAKNGAG-------EV--FTNISLNVIKV  247 (369)
Q Consensus       219 ~~D~G~Y~C~a~n~~g-------~~--~~~~~l~v~~~  247 (369)
                      .+|+|.|.|.+.|..|       ..  ...+.|.|...
T Consensus        87 ~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~  124 (257)
T 1f3r_B           87 TDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSG  124 (257)
T ss_dssp             TTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSS
T ss_pred             cccCEEEEEEEcccccCccccccccccCCceEEEEEeC
Confidence            9999999999999854       11  13356777654

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.58  E-value=1.9e-07  Score=94.35  Aligned_cols=96  Identities=32%  Similarity=0.464  Sum_probs=71.7

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA  229 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  229 (369)
                      ..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+........    ..+..........|.|.+++.+|+|.|+|.|
T Consensus       434 ~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~----~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  509 (816)
T 3dmk_A          434 QAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQV----GQYVTVNGDVVSYLNITSVHANDGGLYKCIA  509 (816)
T ss_dssp             EECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEE----EEEECTTSCEEEEEEESSCCTTTCEEEEEEE
T ss_pred             ecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCccc----ccEEecCCCcEEEEEEeeccccCCEEEEEEE
Confidence            345667888999999999999999999999999877643211000    0000000112346999999999999999999


Q ss_pred             EeCCceEEEEEEEEEeecCC
Q psy12695        230 KNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       230 ~n~~g~~~~~~~l~v~~~~~  249 (369)
                      .|..|.....+.|.|...+.
T Consensus       510 ~n~~g~~~~~~~l~V~~~p~  529 (816)
T 3dmk_A          510 KSKVGVAEHSAKLNVYGLPY  529 (816)
T ss_dssp             EETTEEEEEEEEEEECSSCE
T ss_pred             EECCCeEEEEEEEEEecCCe
Confidence            99999999999999987653

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.57  E-value=1.4e-07  Score=78.22  Aligned_cols=93  Identities=17%  Similarity=0.192  Sum_probs=63.8

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeee-----ccccc---c--cCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIAN-----ISSGL---A--NMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~-----~~~~~---~--~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      ....+.+|+.+.|.|.+.+.+.+.+.|++++.....     .....   .  ..-..++.+   ...+.|.|.+++.+|+
T Consensus         7 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~---~~~~~L~i~~v~~~D~   83 (208)
T 3r4d_A            7 VPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII---YSNGSLLFQMITMKDM   83 (208)
T ss_dssp             ESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEE---CTTSCEEECSCCGGGC
T ss_pred             ccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEE---ecCCeEEEccccccCC
Confidence            346788999999999998999999999987532111     00000   0  000112211   1345799999999999


Q ss_pred             EEEEEEEEeCC-ceEEEEEEEEEeecC
Q psy12695        223 GIYTCRAKNGA-GEVFTNISLNVIKVE  248 (369)
Q Consensus       223 G~Y~C~a~n~~-g~~~~~~~l~v~~~~  248 (369)
                      |.|.|.+.+.. +.....+.|.|...+
T Consensus        84 G~Y~C~~~~~~~~~~~~~~~l~V~~~~  110 (208)
T 3r4d_A           84 GVYTLDMTDENYRRTQATVRFHVHQPV  110 (208)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEEECCC
T ss_pred             eEEEEEEEcccCceeEEEEEEEeccCC
Confidence            99999999985 666777888887553

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.57  E-value=5.1e-08  Score=81.46  Aligned_cols=91  Identities=20%  Similarity=0.380  Sum_probs=61.0

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCC-CC-CeEEEEeCCeEeeecccccc-cCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGS-PV-PKIKWIFKEKIIANISSGLA-NMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      |.+...+....+.+|+.++|.|.+.|. |+ +.+.|++++..+........ ......+.     ..+.|.|.++..+|.
T Consensus       115 P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~-----~~s~L~i~~~~~~d~  189 (213)
T 3mj8_L          115 PSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYM-----ATSYLTMTADAWKSR  189 (213)
T ss_dssp             CEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEE-----EEEEEEEESHHHHSC
T ss_pred             CeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEE-----EEEEEEEeHHHcCCC
Confidence            334333444555689999999999885 33 38999999987753211000 00111121     145699999999999


Q ss_pred             EEEEEEEEeCCceEEEEEE
Q psy12695        223 GIYTCRAKNGAGEVFTNIS  241 (369)
Q Consensus       223 G~Y~C~a~n~~g~~~~~~~  241 (369)
                      |.|+|.|.|..+.....+.
T Consensus       190 G~Y~C~a~n~~~~~~~~~~  208 (213)
T 3mj8_L          190 NTFICKVTHGGNTVEKSLS  208 (213)
T ss_dssp             SCEEEEEEETTEEEEEEEC
T ss_pred             CEEEEEEEECCccEEeeec
Confidence            9999999999977666543

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.57  E-value=6e-08  Score=83.01  Aligned_cols=97  Identities=15%  Similarity=0.131  Sum_probs=65.3

Q ss_pred             CCCCCeeeccCCeEEEEEEeeC---CCCCeEEEEeCCeEe----eecccc-----------------cccCCcceEEEEe
Q psy12695        150 PITPDVTAEENENVTLSCRATG---SPVPKIKWIFKEKII----ANISSG-----------------LANMNKRQYIIKT  205 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g---~p~p~i~W~~~~~~~----~~~~~~-----------------~~~~~~~~~~~~~  205 (369)
                      ..+..+.+.+|+.+.|.|.+.+   .|.+.+.|++++...    ......                 .......+..+. 
T Consensus         7 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-   85 (250)
T 2fbo_J            7 TTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVA-   85 (250)
T ss_dssp             CSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECS-
T ss_pred             cCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEec-
Confidence            3456788999999999999988   888999999976431    100000                 000001111111 


Q ss_pred             ecceeeEEEcccCCCCCEEEEEEEEeCCce-----EEEEEEEEEeec
Q psy12695        206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGE-----VFTNISLNVIKV  247 (369)
Q Consensus       206 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-----~~~~~~l~v~~~  247 (369)
                      ..+...|.|.+++.+|+|.|.|.+.|..+.     ....+.|.|...
T Consensus        86 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~  132 (250)
T 2fbo_J           86 NLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH  132 (250)
T ss_dssp             CTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTT
T ss_pred             cCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEecc
Confidence            112458999999999999999999997764     356788888765

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=98.57  E-value=1e-08  Score=92.36  Aligned_cols=100  Identities=18%  Similarity=0.208  Sum_probs=67.4

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEe---eCCC-CCeEEEEeCCeEeeecccccccCCcceEEEEeecc---eeeEEEcccC
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRA---TGSP-VPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS---LSNLTIVAVT  218 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~---~g~p-~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~L~I~~v~  218 (369)
                      |.+...+....+.+|+.+.|.|.+   .|.| .+.+.|++++..+.............++.......   ...|.|.+++
T Consensus       227 P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~  306 (339)
T 3o4o_C          227 PVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVT  306 (339)
T ss_dssp             CEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSC
T ss_pred             CEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEec
Confidence            344445566788999999999999   8999 88899999887653221110000111111111110   2279999999


Q ss_pred             CCCC-EEEEEEEEeCCceEEEEEEEEEe
Q psy12695        219 MSDS-GIYTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       219 ~~D~-G~Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      .+|+ |.|.|.|.|..|..++.+.+.+.
T Consensus       307 ~~d~~G~Y~C~a~N~~G~~~~~~~~~~~  334 (339)
T 3o4o_C          307 REDLHMDFKCVVHNTLSFQTLRTTVKEH  334 (339)
T ss_dssp             CCSCCCCCEEEEEETTEEECCBCCCCC-
T ss_pred             hhhcCccEEEEEEeccCceEEEEEhhHh
Confidence            9997 99999999999998877666543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.56  E-value=1.2e-07  Score=82.33  Aligned_cols=90  Identities=19%  Similarity=0.274  Sum_probs=74.2

Q ss_pred             CceEEEecCCCCCccCCCC--CCCccEEEeecceeChh-hccCCcccCeeeccCCcccccCCcccccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP  122 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~~~-~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~  122 (369)
                      ..+.+++++++++.+|. +  ...++.|+|++|+|... .|.++++|+.|+|++|+|+.++...+   .+|+.|+|++|.
T Consensus        42 ~L~~L~l~~n~i~~l~~-l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~---~~L~~L~L~~N~  117 (263)
T 1xeu_A           42 GVQNFNGDNSNIQSLAG-MQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS---ACLSRLFLDNNE  117 (263)
T ss_dssp             TCSEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCC---SSCCEEECCSSC
T ss_pred             cCcEEECcCCCcccchH-HhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcccc---CcccEEEccCCc
Confidence            45789999999999983 4  46899999999997732 29999999999999999999987544   899999999999


Q ss_pred             eecccCCcccccCcCcccc
Q psy12695        123 IQKITHEAFINVPKLNLED  141 (369)
Q Consensus       123 l~~~~~~~f~~l~~l~~~~  141 (369)
                      |+.++  .|..+++|...+
T Consensus       118 l~~~~--~l~~l~~L~~L~  134 (263)
T 1xeu_A          118 LRDTD--SLIHLKNLEILS  134 (263)
T ss_dssp             CSBSG--GGTTCTTCCEEE
T ss_pred             cCCCh--hhcCcccccEEE
Confidence            99985  466666655433

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=98.56  E-value=1e-07  Score=86.74  Aligned_cols=75  Identities=16%  Similarity=0.258  Sum_probs=63.2

Q ss_pred             eeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695        155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG  234 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g  234 (369)
                      ..+.+|+.+.|.|.+.+.|.|.+.|++++..+.                   .....|.|.+++.+|+|.|.|.|.|..+
T Consensus       106 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~-------------------~~~~~L~i~~v~~~d~G~Y~C~a~~~~~  166 (363)
T 1wio_A          106 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-------------------QGGKTLSVSQLELQDSGTWTCTVLQNQK  166 (363)
T ss_dssp             SSEESBSCEEEEEECCTTCCCCEEEECSSSCEE-------------------EESSEEEECSBCGGGCEECEEEEEETTE
T ss_pred             eEEecCCCEEEEEEcCCCCCCeEEEEcCCCccc-------------------ccceEEEEeeCChhcCCEEEEEEecCCC
Confidence            467899999999999999999999999875432                   1246899999999999999999999988


Q ss_pred             eEEEEEEEEEeecC
Q psy12695        235 EVFTNISLNVIKVE  248 (369)
Q Consensus       235 ~~~~~~~l~v~~~~  248 (369)
                      .....+.+.|...+
T Consensus       167 ~~~~~~~l~v~~~p  180 (363)
T 1wio_A          167 KVEFKIDIVVLAFQ  180 (363)
T ss_dssp             EEEECCEECEECCS
T ss_pred             eEEEEEEEEEecCC
Confidence            88777788777544

>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R

Probab=98.55  E-value=2.6e-07  Score=70.72  Aligned_cols=85  Identities=20%  Similarity=0.400  Sum_probs=58.7

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeC--Ce------Eeeeccc---cc----ccCCcceEEE-Eeecceee
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFK--EK------IIANISS---GL----ANMNKRQYII-KTINSLSN  211 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~--~~------~~~~~~~---~~----~~~~~~~~~~-~~~~~~~~  211 (369)
                      +...|..+.+.+|++++|.|.+.+.....+.|+++  +.      .+.....   ..    ......+|.. ........
T Consensus         7 v~Q~p~~~~v~~G~~vtL~C~~s~~~~~~v~WyrQ~~g~~l~~p~~l~~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~~   86 (128)
T 1nez_G            7 LRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYV   86 (128)
T ss_dssp             EEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEE
T ss_pred             eEECCCeEEEcCCCCEEEEEEeCccCCCcEEEEEeCCCCCCCCcEEEEEEecccCCceeeccccCCCcEEEEeCCCCEEE
Confidence            34456788999999999999998766678999984  22      1222111   00    0112356665 44445678


Q ss_pred             EEEcccCCCCCEEEEEEEEeC
Q psy12695        212 LTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       212 L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      |.|.+++.+|+|.|.|.+...
T Consensus        87 L~I~~~~~~Dsg~YyCa~~~~  107 (128)
T 1nez_G           87 LTLNKFSKENEGYYFCSVISN  107 (128)
T ss_dssp             EEESSCCGGGCEEEEEEEEET
T ss_pred             EEECCCCHHHCEEEEEEEcCC
Confidence            999999999999999998754

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.55  E-value=2.7e-07  Score=75.13  Aligned_cols=93  Identities=22%  Similarity=0.277  Sum_probs=63.9

Q ss_pred             CCeeeccCCeEEEEEEeeC-CCCCeEEEEeC-CeEeeecccc-cc-cC-C--cceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        153 PDVTAEENENVTLSCRATG-SPVPKIKWIFK-EKIIANISSG-LA-NM-N--KRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g-~p~p~i~W~~~-~~~~~~~~~~-~~-~~-~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      ..+.+.+|++++|.|.+.+ .+.+.|.|++. +..+...... .. .. .  +.++.+  ....+.|.|.+++.+|+|.|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l--~~~~~sL~I~~v~~~D~G~Y   84 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL--DKTNGALRIYNVSKEDRGDY   84 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEE--CTTTCCEEECSCCGGGCEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEE--eCCCccEEEcCCCHHHCeEE
Confidence            4678999999999999854 34678999994 4333321111 00 00 1  123332  23567899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEeecC
Q psy12695        226 TCRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      .|.+.+.. .....+.|.|..++
T Consensus        85 ~C~v~~~~-~~~~~~~L~V~~~~  106 (180)
T 2dru_A           85 YMRMLHET-EDQWKITMEVYEMV  106 (180)
T ss_dssp             EEEEESSS-EEEEEEEEEEECCC
T ss_pred             EEEEEcCC-eEEEEEEEEEECCC
Confidence            99998776 66777888887643

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.55  E-value=6.8e-08  Score=83.71  Aligned_cols=99  Identities=19%  Similarity=0.347  Sum_probs=61.6

Q ss_pred             CccCCCCCeeeccCCeEEEEEEee---CCCCCeEEEEeCCeEeeec------ccc-cc--cCCcceEEE--EeecceeeE
Q psy12695        147 NIRPITPDVTAEENENVTLSCRAT---GSPVPKIKWIFKEKIIANI------SSG-LA--NMNKRQYII--KTINSLSNL  212 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~---g~p~p~i~W~~~~~~~~~~------~~~-~~--~~~~~~~~~--~~~~~~~~L  212 (369)
                      .+...+..+.+.+|+.+.|.|.+.   +.+.+.+.|++.+......      ... ..  ..-..++.+  ........|
T Consensus         7 ~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   86 (268)
T 3mj6_A            7 GLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSL   86 (268)
T ss_dssp             -----CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCE
T ss_pred             ccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEE
Confidence            344556778999999999999998   7778889999965321100      000 00  000012211  112234789


Q ss_pred             EEcccCCCCCEEEEEEEEeCCce--EEEEEEEEEe
Q psy12695        213 TIVAVTMSDSGIYTCRAKNGAGE--VFTNISLNVI  245 (369)
Q Consensus       213 ~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~l~v~  245 (369)
                      .|.+++.+|+|.|.|.+.|..+.  ....+.|.|.
T Consensus        87 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~  121 (268)
T 3mj6_A           87 LLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL  121 (268)
T ss_dssp             EECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE
T ss_pred             EECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe
Confidence            99999999999999999987654  3455666665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.54  E-value=6.8e-08  Score=86.15  Aligned_cols=96  Identities=17%  Similarity=0.232  Sum_probs=77.5

Q ss_pred             ceEEEecC-CCCC-ccCCCC--CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccccccccccc
Q psy12695         47 KETVLCKA-KNFT-TIPEQL--DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLS  119 (369)
Q Consensus        47 ~~~~~c~~-~~l~-~ip~~~--~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  119 (369)
                      .+.++.++ +++. .+|..+  -..+++|+|++|+|.   +..|.++++|++|+|++|+|+...+..|..+++|+.|+|+
T Consensus        78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  157 (313)
T 1ogq_A           78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD  157 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred             CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence            46788884 7776 678766  357999999999975   6789999999999999999997667789999999999999


Q ss_pred             ccceecccCCcccccC-cCccccc
Q psy12695        120 GNPIQKITHEAFINVP-KLNLEDF  142 (369)
Q Consensus       120 ~N~l~~~~~~~f~~l~-~l~~~~~  142 (369)
                      +|.|+...+..|..+. .|...++
T Consensus       158 ~N~l~~~~p~~l~~l~~~L~~L~L  181 (313)
T 1ogq_A          158 GNRISGAIPDSYGSFSKLFTSMTI  181 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEEC
T ss_pred             CCcccCcCCHHHhhhhhcCcEEEC
Confidence            9999965556666665 5544433

>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=98.54  E-value=5.4e-07  Score=67.73  Aligned_cols=96  Identities=16%  Similarity=0.252  Sum_probs=60.3

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCC---CCeEEEEeCCe-----EeeecccccccCCcceEEEEe--ecceeeEEEcccCCC
Q psy12695        151 ITPDVTAEENENVTLSCRATGSP---VPKIKWIFKEK-----IIANISSGLANMNKRQYIIKT--INSLSNLTIVAVTMS  220 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p---~p~i~W~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~  220 (369)
                      .|..+.+.+|++++|.|...+..   ...+.|+++..     .+.............++....  ......|+|.+++.+
T Consensus         6 ~p~~v~~~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~   85 (117)
T 1xed_A            6 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   85 (117)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCeEEEecCCCEEEEeEecCCcCCCCceEEEEEeCCCCCCEEEEEeCCeEcceEcCCEEEEecCCCCEEEEEECCCChH
Confidence            45678899999999999986541   35699998642     122211111111233444432  345568999999999


Q ss_pred             CCEEEEEEEEeCCceEEEEEEEEEee
Q psy12695        221 DSGIYTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       221 D~G~Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      |+|.|.|.+............+.|..
T Consensus        86 DsG~Y~C~v~~~~~~l~f~~~~~~~~  111 (117)
T 1xed_A           86 DSGRYKCGLGINSRGLSFDVSLEVLE  111 (117)
T ss_dssp             GCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred             HCEEEEEEEEeCCCCeeEEEEEEEee
Confidence            99999999876533344445555543

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.54  E-value=3.6e-08  Score=83.66  Aligned_cols=100  Identities=13%  Similarity=0.192  Sum_probs=49.9

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCe--E---eeecccccccCCcceEEEEeecceeeEEEcccCCCC
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK--I---IANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSD  221 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D  221 (369)
                      .+...+..+.+.+|++++|.|.+.+.|.+.+.|++++.  .   +.............++..........|.|.+++.+|
T Consensus        25 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  104 (233)
T 3bqu_C           25 TVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSED  104 (233)
T ss_dssp             CEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCC
T ss_pred             eEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHH
Confidence            33444677889999999999999998888999998531  1   111000000001122222222334589999999999


Q ss_pred             CEEEEEEEEeCCceEE-EEEEEEEee
Q psy12695        222 SGIYTCRAKNGAGEVF-TNISLNVIK  246 (369)
Q Consensus       222 ~G~Y~C~a~n~~g~~~-~~~~l~v~~  246 (369)
                      +|.|.|.+.|..+... ....+.|..
T Consensus       105 ~G~Y~C~~~~~~~~~~~~~~~l~V~~  130 (233)
T 3bqu_C          105 VADYYCLQSDNLPYTFGGGTNLEIKR  130 (233)
T ss_dssp             CSEEEEEECSSSSCCBCCCCBC---C
T ss_pred             CEEEEEEEecCCceeecCCEEEEEeC
Confidence            9999999998765322 223455543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.54  E-value=3e-08  Score=88.48  Aligned_cols=90  Identities=19%  Similarity=0.086  Sum_probs=69.1

Q ss_pred             ceEEEecCCCCCc---cCCCC----CCCccEEEeecceeC---h---hhccCCcccCeeeccCCcccccC-Ccccccccc
Q psy12695         47 KETVLCKAKNFTT---IPEQL----DVGTQVLDLSDNFLD---R---YTFRKLINLVELDLSYNQIQFVP-SHILDSILE  112 (369)
Q Consensus        47 ~~~~~c~~~~l~~---ip~~~----~~~~~~L~l~~n~i~---~---~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~  112 (369)
                      .+.++.++|.+..   +|..+    ...++.|+|++|+|.   .   ..|.++++|+.|+|++|+|+.++ ...|.++++
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  254 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ  254 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred             CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence            5789999998753   23222    357899999999987   1   45678899999999999999865 356778899


Q ss_pred             cccccccccceecccCCcccccCc
Q psy12695        113 LRELKLSGNPIQKITHEAFINVPK  136 (369)
Q Consensus       113 L~~L~L~~N~l~~~~~~~f~~l~~  136 (369)
                      |+.|+|++|.|+.++...+.++..
T Consensus       255 L~~L~Ls~N~l~~ip~~~~~~L~~  278 (312)
T 1wwl_A          255 LNSLNLSFTGLKQVPKGLPAKLSV  278 (312)
T ss_dssp             CCEEECTTSCCSSCCSSCCSEEEE
T ss_pred             CCEEECCCCccChhhhhccCCceE
Confidence            999999999999888776644443

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.54  E-value=7.5e-08  Score=81.32  Aligned_cols=81  Identities=16%  Similarity=0.290  Sum_probs=55.0

Q ss_pred             CccCCCCCeeeccCCeE-EEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEe----ec-----ceeeEEEc
Q psy12695        147 NIRPITPDVTAEENENV-TLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT----IN-----SLSNLTIV  215 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~-~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~L~I~  215 (369)
                      .+...+....+.+|+.+ .|.|.+ .|.|.|.+.|++++..+......     ..++.+..    ..     ..+.|.|.
T Consensus       120 ~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~L~i~  194 (231)
T 2pet_A          120 EVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEM-----NPEGYMTSRTVREASGLLSLTSTLYLR  194 (231)
T ss_dssp             EEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSC-----CSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             EEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCcccccc-----ccceeecceeEecCCCeEEEEEEEEEe
Confidence            33444556677899988 999999 89999999999999876543210     00111110    00     02568887


Q ss_pred             ccCCCCCEEEEEEEEeC
Q psy12695        216 AVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n~  232 (369)
                      ....+|.|.|+|.|.|.
T Consensus       195 ~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          195 LRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             CCGGGGGCEEEEEEEEE
T ss_pred             cchhhCCceEEEEEEcC
Confidence            66666799999999994

>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}

Probab=98.54  E-value=4.2e-07  Score=71.58  Aligned_cols=101  Identities=25%  Similarity=0.393  Sum_probs=64.3

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCC-CCCeEEEEeCC-----eE---eeeccc-c----cccCCcceEEEE--eeccee
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGS-PVPKIKWIFKE-----KI---IANISS-G----LANMNKRQYIIK--TINSLS  210 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~-----~~---~~~~~~-~----~~~~~~~~~~~~--~~~~~~  210 (369)
                      .+...|..+.+.+|+.++|.|.+.+. ....+.|+++.     ..   +..... .    .......+|.+.  ......
T Consensus         3 ~v~Q~p~~~~v~~G~svtL~C~~s~~~~~~~v~Wyrq~~g~~g~~~~~l~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~   82 (150)
T 3dmm_D            3 ALIQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRP   82 (150)
T ss_dssp             -CEEECSEEEEETTSCEEEEEECCCSSCCCEEEEEEEECCSSCCEEEEEEEEETTTEEEECTTTTTTCCEEEESTTSSSC
T ss_pred             ccEECCCeEEEeCCCcEEEEEEecCCCCCceEEEEEeCCCCCCCccEEEEEEecCCceEeCCCCccCcEEEEEcCCCCEE
Confidence            34455678899999999999999764 56679999862     11   211111 0    011123466554  344567


Q ss_pred             eEEEcccCCCCCEEEEEEEEeCCceEE-EEEEEEEeec
Q psy12695        211 NLTIVAVTMSDSGIYTCRAKNGAGEVF-TNISLNVIKV  247 (369)
Q Consensus       211 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~-~~~~l~v~~~  247 (369)
                      .|.|.+++.+|+|.|.|.+.......+ ....|.|...
T Consensus        83 sL~I~~l~~~Dsg~Y~C~~~~~~~~~fG~GT~L~V~~~  120 (150)
T 3dmm_D           83 FLSIMNVKPEDSDFYFCATVGSPKMVFGTGTKLTVVDV  120 (150)
T ss_dssp             EEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEESC
T ss_pred             EEEECCCChhhCEEEEEEEecCCcceECCCEEEEEeCC
Confidence            899999999999999999975432222 2245666553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.54  E-value=1.2e-07  Score=96.07  Aligned_cols=96  Identities=23%  Similarity=0.217  Sum_probs=79.2

Q ss_pred             ceEEEecCCCCCccCCCC---CCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQL---DVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG  120 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~---~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  120 (369)
                      .+.++.+++.+..++...   ...++.|+|++|+|.   +.+|.++++|+.|+|++|+|+.+.+.+|.++++|+.|+|++
T Consensus       268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  347 (844)
T 3j0a_A          268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK  347 (844)
T ss_dssp             CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred             ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC
Confidence            567888888888765433   357899999999854   67899999999999999999999888999999999999999


Q ss_pred             cceecccCCcccccCcCccccc
Q psy12695        121 NPIQKITHEAFINVPKLNLEDF  142 (369)
Q Consensus       121 N~l~~~~~~~f~~l~~l~~~~~  142 (369)
                      |.|..+++..|.++++|...++
T Consensus       348 N~i~~~~~~~~~~l~~L~~L~L  369 (844)
T 3j0a_A          348 NHIAIIQDQTFKFLEKLQTLDL  369 (844)
T ss_dssp             CCCCCCCSSCSCSCCCCCEEEE
T ss_pred             CCCCccChhhhcCCCCCCEEEC
Confidence            9999998888888877655433

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.54  E-value=2.6e-07  Score=75.10  Aligned_cols=80  Identities=10%  Similarity=0.199  Sum_probs=57.8

Q ss_pred             eeeccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        155 VTAEENENVTLSCRATGSPVP--KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ..+.+|+.+.|.|.+.|.|.|  .+.|++++..+......              .....|.|.  +.+|+|.|.|.+.|.
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~--------------~~~~~l~i~--~~~d~G~Y~C~~~n~   71 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP--------------GQKTEFKVD--SDDQWGEYSCVFLPE   71 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC--------------CSEEEEEEC--GGGCCEEEEEEEEST
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc--------------CCcEEEEEe--chhhCeEEEEEEECC
Confidence            567899999999999988887  89999998776532211              113456665  689999999999984


Q ss_pred             CceEEEEEEEEEeecCCcccC
Q psy12695        233 AGEVFTNISLNVIKVETAVAQ  253 (369)
Q Consensus       233 ~g~~~~~~~l~v~~~~~~~~~  253 (369)
                      .   ...+.|.|...|.....
T Consensus        72 ~---~~~~~l~V~~~P~~~~~   89 (184)
T 3b5h_A           72 P---MGTANIQLHGPPRVKAV   89 (184)
T ss_dssp             T---SCEEEEEECCSCCCEES
T ss_pred             c---CcEEEEEEecCCceeec
Confidence            3   24567777766644333

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=98.53  E-value=1.6e-07  Score=85.32  Aligned_cols=93  Identities=14%  Similarity=0.112  Sum_probs=66.7

Q ss_pred             CCeeeccCCeEEEEEEeeC-----CCCCeEEEEeCCeEeeecccccccCCcceEEEEe----------ecceeeEEEccc
Q psy12695        153 PDVTAEENENVTLSCRATG-----SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT----------INSLSNLTIVAV  217 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g-----~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~L~I~~v  217 (369)
                      ..+.+.+|+.+.|.|.+.|     .|.|.+.|++++..+.... ..+.....++.+..          ......|.|.++
T Consensus       184 ~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v  262 (363)
T 1wio_A          184 SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSW-ITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQA  262 (363)
T ss_dssp             EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCE-EEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSB
T ss_pred             CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceE-EEEEecCCeeeccccccchhhhcccCCceEEEEccC
Confidence            4566788999999998887     7889999999886553210 00000011222211          112448999999


Q ss_pred             CCCCCEEEEEEEEeC--CceEEEEEEEEEee
Q psy12695        218 TMSDSGIYTCRAKNG--AGEVFTNISLNVIK  246 (369)
Q Consensus       218 ~~~D~G~Y~C~a~n~--~g~~~~~~~l~v~~  246 (369)
                      +.+|+|.|.|.|.|.  .|.....+.|.|..
T Consensus       263 ~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~  293 (363)
T 1wio_A          263 LPQYAGSGNLTLALEAKTGKLHQEVNLVVMR  293 (363)
T ss_dssp             CGGGCEEEEEEECBTTTTCCEEEEEEEEEEE
T ss_pred             CcCcCcEEEEEEEEhhhcCeEEEEEeEEEEE
Confidence            999999999999999  99999999988874

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.53  E-value=2.8e-07  Score=78.87  Aligned_cols=96  Identities=19%  Similarity=0.242  Sum_probs=62.4

Q ss_pred             CCCeeeccCCeEEEEEEeeCCC--CCeEEEEeCC--eE---eeecccc-----cccCCcceEEEEee--cceeeEEEccc
Q psy12695        152 TPDVTAEENENVTLSCRATGSP--VPKIKWIFKE--KI---IANISSG-----LANMNKRQYIIKTI--NSLSNLTIVAV  217 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~~---~~~~~~~-----~~~~~~~~~~~~~~--~~~~~L~I~~v  217 (369)
                      +..+.+.+|+.++|.|.+.|.|  .+.+.|+++.  ..   +......     .......++.+...  .....|.|.++
T Consensus         9 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (247)
T 2ghw_B            9 SGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL   88 (247)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence            3568899999999999999987  5789999843  11   1100000     00011234444332  34568999999


Q ss_pred             CCCCCEEEEEEEEeCCce--EEEEEEEEEeec
Q psy12695        218 TMSDSGIYTCRAKNGAGE--VFTNISLNVIKV  247 (369)
Q Consensus       218 ~~~D~G~Y~C~a~n~~g~--~~~~~~l~v~~~  247 (369)
                      +.+|+|.|.|.+.|..+.  ....+.|.|...
T Consensus        89 ~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~  120 (247)
T 2ghw_B           89 RAEDTAVYYCARDRSYYLDYWGQGTLVTVSSG  120 (247)
T ss_dssp             CGGGCEEEEEEEEETTEEEEECCCEEEEECSC
T ss_pred             CHHHCEEEEEeeeccCCccccCCceEEEEecc
Confidence            999999999999998433  223356777643

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=98.53  E-value=6.5e-07  Score=63.39  Aligned_cols=89  Identities=16%  Similarity=0.230  Sum_probs=59.7

Q ss_pred             CCeeeccCCeEEEEEEeeC-CCCCeEEEEeCCeEe-eecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        153 PDVTAEENENVTLSCRATG-SPVPKIKWIFKEKII-ANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      +..++..|+.+.|.|.+.+ .+.|.++|-+-+... .......     ....-........|.+.++..+|+|.|.|.|.
T Consensus        19 S~hsv~~G~~f~leCpv~yc~~rP~VtWcKln~~~c~~L~~~~-----q~w~E~~N~s~fvLhf~~V~~sDsGsYRCsAn   93 (120)
T 2aw2_A           19 SEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQ-----TSWKEEKNISFFILHFEPVLPNDNGSYRCSAN   93 (120)
T ss_dssp             EEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSC-----EEEEECSSCEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             ccceEecCCeEEEEccEEeccCCCceEEEecCCceEEECcccc-----ccceecCCeeEEEEEEeeeeEcCCcceEEEee
Confidence            4567899999999999998 699999999866321 1111100     00000001113479999999999999999999


Q ss_pred             eCCceEE-EEEEEEEee
Q psy12695        231 NGAGEVF-TNISLNVIK  246 (369)
Q Consensus       231 n~~g~~~-~~~~l~v~~  246 (369)
                      +..|... ..+.+.|.+
T Consensus        94 ~~sg~ieSHsvtI~Vt~  110 (120)
T 2aw2_A           94 FQSNLIESHSTTLYVTD  110 (120)
T ss_dssp             ETTEEEECCCEEEEEEC
T ss_pred             CCCCcEEeeEEEEEEEe
Confidence            9998854 345555543

>3bdb_A Novel immune-type receptor 11; immunoglobulin variable domain-like beta-sandwich, stalk region, immune system; 2.80A {Ictalurus punctatus}

Probab=98.53  E-value=2.7e-07  Score=71.54  Aligned_cols=97  Identities=18%  Similarity=0.249  Sum_probs=65.1

Q ss_pred             CCCeeeccCCeEEEEEEee-CCCCCeEEEEeCC--e---Eeeecc-c-cc--c--cCCcceEEEEeecceeeEEEcccCC
Q psy12695        152 TPDVTAEENENVTLSCRAT-GSPVPKIKWIFKE--K---IIANIS-S-GL--A--NMNKRQYIIKTINSLSNLTIVAVTM  219 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~-g~p~p~i~W~~~~--~---~~~~~~-~-~~--~--~~~~~~~~~~~~~~~~~L~I~~v~~  219 (369)
                      +..+.+.+|++++|.|.+. +.....+.|+++.  +   .+.... . ..  .  .....++..........|+|.+++.
T Consensus         6 p~~v~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~L~I~~~~~   85 (137)
T 3bdb_A            6 LHVKTVKRGENVTMECSMSKVTNKNNLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQKFDLNIIGARE   85 (137)
T ss_dssp             CEECCCCTTCEECCCCBCTTCCCGGGBEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEESSSBEEEEEESCCS
T ss_pred             CCeEEEcCCCCEEEEeecCCCcCcceEEEEEECCCCCCEEEEEEEcCCCcceecCcccCCcEEEEecCCEEEEEECCCCH
Confidence            4567889999999999997 7666789999853  2   222111 1 10  0  0113566665555567899999999


Q ss_pred             CCCEEEEEEEEeCCceE-EEEEEEEEeecC
Q psy12695        220 SDSGIYTCRAKNGAGEV-FTNISLNVIKVE  248 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~g~~-~~~~~l~v~~~~  248 (369)
                      +|+|.|.|.+.+..... .....|.|....
T Consensus        86 ~Dsg~Y~C~~~~~~~~~fg~GT~L~V~~~~  115 (137)
T 3bdb_A           86 DDGGEYFCGEVEGIIIKFTSGTRLQFEGSN  115 (137)
T ss_dssp             TTCEEEEEEEECSSCEEEEEEEEECCCCCC
T ss_pred             HHCEEEEEEEccCCeEEECCCEEEEEECCC
Confidence            99999999998765433 334566666543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.53  E-value=6.4e-08  Score=86.48  Aligned_cols=95  Identities=13%  Similarity=0.096  Sum_probs=74.4

Q ss_pred             CceEEEecCCCCCccCCCCCCCccEEEeecceeChhhccCCcccCeeeccCCcccccCCcccccccccccccccccceec
Q psy12695         46 GKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK  125 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~  125 (369)
                      ..+.++.+++.++.+|..  ..++.|+|++|+|....+..+++|+.|+|++|+|+.+++..|..+++|+.|+|++|.|+.
T Consensus        81 ~L~~L~Ls~n~l~~l~~~--~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  158 (317)
T 3o53_A           81 TLRTLDLNNNYVQELLVG--PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT  158 (317)
T ss_dssp             TCCEEECCSSEEEEEEEC--TTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred             CCCEEECcCCccccccCC--CCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence            356788888888877743  688889999998876666677888899999999988888888888889999999998888


Q ss_pred             ccCCccc-ccCcCccccc
Q psy12695        126 ITHEAFI-NVPKLNLEDF  142 (369)
Q Consensus       126 ~~~~~f~-~l~~l~~~~~  142 (369)
                      +....|. .++.|...++
T Consensus       159 ~~~~~~~~~l~~L~~L~L  176 (317)
T 3o53_A          159 VNFAELAASSDTLEHLNL  176 (317)
T ss_dssp             EEGGGGGGGTTTCCEEEC
T ss_pred             ccHHHHhhccCcCCEEEC
Confidence            7766553 5666555444

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.53  E-value=2.4e-07  Score=75.60  Aligned_cols=92  Identities=17%  Similarity=0.248  Sum_probs=63.5

Q ss_pred             CCeeeccCCeEEEEEEee--CCCCCeEEEEe--CCeEeeeccccccc-CCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695        153 PDVTAEENENVTLSCRAT--GSPVPKIKWIF--KEKIIANISSGLAN-MNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~--g~p~p~i~W~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      ..+.+.+|++++|.|...  +.+.+.|.|++  ++..+......... ....++.+.   .++.|.|.+++.+|+|.|.|
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~---~ngsL~I~~v~~~DsG~Y~c   83 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF---KNGTLKIKHLKTDDQDIYKV   83 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEEC---TTSCEEECSCCGGGCEEEEE
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEEC---CCCCEEECCCChhhCEEEEE
Confidence            456788999999999553  35567899999  77665432111000 012233322   34689999999999999999


Q ss_pred             EEEeCCceEE--EEEEEEEeec
Q psy12695        228 RAKNGAGEVF--TNISLNVIKV  247 (369)
Q Consensus       228 ~a~n~~g~~~--~~~~l~v~~~  247 (369)
                      .+.|..|...  ..+.|.|...
T Consensus        84 ~~~n~~g~~~~~~~~~L~V~~~  105 (182)
T 1hnf_A           84 SIYDTKGKNVLEKIFDLKIQER  105 (182)
T ss_dssp             EEEETTSCEEEEEEEEEEEECC
T ss_pred             EEEeCCCceeEEEEEEEEEcCc
Confidence            9999988753  4667777754

>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}

Probab=98.53  E-value=9.9e-08  Score=72.87  Aligned_cols=94  Identities=13%  Similarity=0.186  Sum_probs=60.5

Q ss_pred             CCCeeeccCCeEEEEEEeeCC---CCCeEEEEeCC--e---Eeee-ccccc--c-cCCcceEEEE--eecceeeEEEccc
Q psy12695        152 TPDVTAEENENVTLSCRATGS---PVPKIKWIFKE--K---IIAN-ISSGL--A-NMNKRQYIIK--TINSLSNLTIVAV  217 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~---p~p~i~W~~~~--~---~~~~-~~~~~--~-~~~~~~~~~~--~~~~~~~L~I~~v  217 (369)
                      +..+.+.+|++++|.|.+.+.   ....+.|++..  .   .+.. .....  . .....+|.+.  .......|.|.++
T Consensus         7 p~~v~v~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~   86 (126)
T 2h32_A            7 PPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISEL   86 (126)
T ss_dssp             CSEEEEETTCCEEEEEEECTTSCGGGCEEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEECCCCCEEEEEEecCCCccccceEEEEEECCCCCCEEEEEEECCCCEEeCCCCCCCEEEEEeCCCCeEEEEECCC
Confidence            456889999999999999764   24579999853  1   1221 11110  0 0113456554  2345678999999


Q ss_pred             CCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy12695        218 TMSDSGIYTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       218 ~~~D~G~Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      +.+|+|.|.|.+.+..+.......|.|.
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~t~l~v~  114 (126)
T 2h32_A           87 QPEDEAMYYCAMGARSSEKEEREREWEE  114 (126)
T ss_dssp             CGGGCEEEEEEEECSCCCCCCTTCC---
T ss_pred             ChhHCEEEEEEEEcCCCCcceeEEEeec
Confidence            9999999999998877655444445443

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=98.52  E-value=1.6e-07  Score=82.24  Aligned_cols=85  Identities=18%  Similarity=0.262  Sum_probs=57.6

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEee-cceeeEEEcccCCCCCEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI-NSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~  224 (369)
                      |.|......+.+.+|+.++|.|.+.|.    +.|++++..+..           +...... ...+.|.|.+++.+|+|.
T Consensus         1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~-----------~~~~~~~~~~~~~L~i~~~~~~D~G~   65 (289)
T 3mjg_X            1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQ-----------EMAKAQDGTFSSVLTLTNLTGLDTGE   65 (289)
T ss_dssp             CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSE-----------EEEECTTSCEEEEEEECSCCGGGCEE
T ss_pred             CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCccc-----------ceeccCCCceeEEEEEccCChhhCEE
Confidence            445555667889999999999999875    999999876521           1110000 114689999999999999


Q ss_pred             EEEEEEeCCce---EEEEEEEEEe
Q psy12695        225 YTCRAKNGAGE---VFTNISLNVI  245 (369)
Q Consensus       225 Y~C~a~n~~g~---~~~~~~l~v~  245 (369)
                      |+|.|.|..|.   ....+.+.|.
T Consensus        66 Y~C~a~n~~g~~~~~~~~~~v~v~   89 (289)
T 3mjg_X           66 YFCTHNDSRGLETDERKRLYIFVP   89 (289)
T ss_dssp             EEEECCC------CCCEEEEEECC
T ss_pred             EEEEEcccCCCCcCcEEeEEEEEE
Confidence            99999998876   2334444444

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.52  E-value=2.5e-07  Score=79.36  Aligned_cols=82  Identities=17%  Similarity=0.290  Sum_probs=55.8

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCC--CCeEEEEeC--CeEeeec---c--cc---cccCCcceEEEEee--cceeeEEEc
Q psy12695        150 PITPDVTAEENENVTLSCRATGSP--VPKIKWIFK--EKIIANI---S--SG---LANMNKRQYIIKTI--NSLSNLTIV  215 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~--~~~~~~~---~--~~---~~~~~~~~~~~~~~--~~~~~L~I~  215 (369)
                      ..+....+.+|+.++|.|.+.+.+  .+.+.|+++  +..+...   .  ..   .......++.+...  .....|.|.
T Consensus       136 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~  215 (250)
T 3esu_F          136 QQSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLS  215 (250)
T ss_dssp             EECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             ecCCceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEEC
Confidence            345667899999999999999877  788999986  3322111   0  00   00011234444322  345579999


Q ss_pred             ccCCCCCEEEEEEEEe
Q psy12695        216 AVTMSDSGIYTCRAKN  231 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n  231 (369)
                      +++.+|+|.|.|.+.+
T Consensus       216 ~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          216 SLTSVDSAVYFCARSG  231 (250)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             CCCcccCEEEEEEEec
Confidence            9999999999999997

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.52  E-value=4.6e-08  Score=87.45  Aligned_cols=92  Identities=14%  Similarity=0.091  Sum_probs=70.8

Q ss_pred             ceEEEecCCCCCccCC-CCCCCccEEEeecceeChhhccCCcccCeeeccCCcccccCCcccccccccccccccccceec
Q psy12695         47 KETVLCKAKNFTTIPE-QLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK  125 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~-~~~~~~~~L~l~~n~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~  125 (369)
                      .+.++.+++.++.++. .-...++.|+|++|+|..  +...++|+.|+|++|+|+.++...   +++|+.|+|++|.|+.
T Consensus        60 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~--l~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~  134 (317)
T 3o53_A           60 LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE--LLVGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITM  134 (317)
T ss_dssp             CCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE--EEECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCS
T ss_pred             CCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc--ccCCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCC
Confidence            5788999998886554 124578999999999763  234588999999999999887665   4678999999999999


Q ss_pred             ccCCcccccCcCcccccc
Q psy12695        126 ITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       126 ~~~~~f~~l~~l~~~~~~  143 (369)
                      +.+..|..+++|...++.
T Consensus       135 ~~~~~~~~l~~L~~L~Ls  152 (317)
T 3o53_A          135 LRDLDEGCRSRVQYLDLK  152 (317)
T ss_dssp             GGGBCTGGGSSEEEEECT
T ss_pred             ccchhhhccCCCCEEECC
Confidence            988888877776554443

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=98.52  E-value=2.2e-07  Score=82.25  Aligned_cols=97  Identities=21%  Similarity=0.307  Sum_probs=62.5

Q ss_pred             CCCeeeccCCeEEEEEEeeCC-CCCeEEEEeCCeEeee----cccc--cc--cCCcceEEE-EeecceeeEEEcccCCCC
Q psy12695        152 TPDVTAEENENVTLSCRATGS-PVPKIKWIFKEKIIAN----ISSG--LA--NMNKRQYII-KTINSLSNLTIVAVTMSD  221 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~~~~~~----~~~~--~~--~~~~~~~~~-~~~~~~~~L~I~~v~~~D  221 (369)
                      +.++++.+|++++|.|.+.+. +.+.|.|++.+.....    ....  ..  .....+... ......+.|.|.+++.+|
T Consensus         6 ~p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D   85 (308)
T 4fom_A            6 EPHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSD   85 (308)
T ss_dssp             CCSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGG
T ss_pred             CCEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHH
Confidence            347889999999999998654 4456999986532111    0000  00  000112211 112245689999999999


Q ss_pred             CEEEEEEEEeC-CceEEEEEEEEEeecC
Q psy12695        222 SGIYTCRAKNG-AGEVFTNISLNVIKVE  248 (369)
Q Consensus       222 ~G~Y~C~a~n~-~g~~~~~~~l~v~~~~  248 (369)
                      +|.|+|.|.|. .|.....+.+.+...+
T Consensus        86 ~G~Y~C~a~n~~~~~~~~~~~~~v~~~~  113 (308)
T 4fom_A           86 SGKYICKAVTFPLGNAQSSTTVTVLVEP  113 (308)
T ss_dssp             CEEEEEEEEETTTEEEEEEEEEEEEBCC
T ss_pred             CEEEEEEEeeCCCcceeeeeEEEeeecc
Confidence            99999999886 5667777777776554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.52  E-value=1.4e-07  Score=84.01  Aligned_cols=77  Identities=29%  Similarity=0.281  Sum_probs=34.8

Q ss_pred             eEEEecCCCCCccCCCC--CCCccEEEeecceeCh-hhccCCcccCeeeccCCcccccCCccccccccccccccccccee
Q psy12695         48 ETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ  124 (369)
Q Consensus        48 ~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~  124 (369)
                      +.++.+++.++.+|. +  ...++.|+|++|+|.. ..|.++++|+.|+|++|+|+.+++  |..+++|+.|+|++|.++
T Consensus        66 ~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  142 (308)
T 1h6u_A           66 IGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT  142 (308)
T ss_dssp             CEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             CEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccC
Confidence            344555555444443 2  1234455555554331 234444444444444444444432  444444444444444444


Q ss_pred             ccc
Q psy12695        125 KIT  127 (369)
Q Consensus       125 ~~~  127 (369)
                      .++
T Consensus       143 ~~~  145 (308)
T 1h6u_A          143 NIS  145 (308)
T ss_dssp             CCG
T ss_pred             cCc
Confidence            443

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=98.52  E-value=1.1e-07  Score=72.03  Aligned_cols=78  Identities=22%  Similarity=0.335  Sum_probs=53.9

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCC----CCeEEEEeCC----eEeeecccccccCCcceEEEEe-----ecceeeEEEccc
Q psy12695        151 ITPDVTAEENENVTLSCRATGSP----VPKIKWIFKE----KIIANISSGLANMNKRQYIIKT-----INSLSNLTIVAV  217 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p----~p~i~W~~~~----~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~v  217 (369)
                      .|..+.+.+|++++|.|.+.+.+    .+.+.|+++.    ..+...   .. ....++....     ......|.|.++
T Consensus        13 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~g~~~~~~---~~-~~~~R~~~~~~~~~~~~~~~sL~I~~v   88 (120)
T 3noi_A           13 QPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNG---TP-EFRGRLAPLASSRFLHDHQAELHIRDV   88 (120)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTSCCCEEEEEEESSCSTTCBCCTT---CT-TTTTCEECCCHHHHHTTCBCCEEESSC
T ss_pred             CCCEEEEEcCCCEEEEeeecCCCCCCceeEEEEEeccCCCCceeccc---cc-ccCCcEEeecccccccCCcEEEEEecC
Confidence            35678899999999999998765    4579999975    222110   00 1122333321     234568999999


Q ss_pred             CCCCCEEEEEEEEeC
Q psy12695        218 TMSDSGIYTCRAKNG  232 (369)
Q Consensus       218 ~~~D~G~Y~C~a~n~  232 (369)
                      +.+|+|.|.|.+...
T Consensus        89 ~~~DsG~Y~C~v~~~  103 (120)
T 3noi_A           89 RGHDASIYVCRVEVL  103 (120)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             ChhhCEEEEEEEEEC
Confidence            999999999999754

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=98.52  E-value=4.3e-08  Score=80.16  Aligned_cols=67  Identities=16%  Similarity=0.208  Sum_probs=51.5

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ...+.+|+.++|.|.+.+.| +.+.|++++..+....         .    .....+.|.|.+++.+|+|.|.|.|.|..
T Consensus       102 ~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~---------~----~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~  167 (184)
T 2gi7_A          102 GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKN---------P----ERWYRASFPIITVTAAHSGTYRCYSFSSR  167 (184)
T ss_dssp             CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCC---------C----CEEEEESSSEEEETTCCSEEEEEEEECTT
T ss_pred             CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCccee---------c----CCCceEEEEEccCCccCCeEEEEEEEeCC
Confidence            45678999999999987665 6999999986543210         0    11235689999999999999999999975


Q ss_pred             c
Q psy12695        234 G  234 (369)
Q Consensus       234 g  234 (369)
                      +
T Consensus       168 ~  168 (184)
T 2gi7_A          168 D  168 (184)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=98.51  E-value=3.5e-07  Score=87.63  Aligned_cols=92  Identities=15%  Similarity=0.244  Sum_probs=64.6

Q ss_pred             CCCCeeeccCCeEEEEEEee-CCCCCeEEEEeCCeEeeecccccccCCcceEEE-EeecceeeEEEcccCCCCCEEEEEE
Q psy12695        151 ITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYII-KTINSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      .+....+.+|+.+.|.|.+. |.|.|.|.|++++..+........    ..+.. ......+.|.|.+++.+|+|.|+|.
T Consensus       233 ~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~----~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~  308 (527)
T 3qs9_E          233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEM----STYSTNRTMIRILFAFVSSVARNDTGYYTCS  308 (527)
T ss_dssp             SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEE----EEEETTTEEEEEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeee----eeeccCcceeeEEEEEEccCCcccCeEEEEE
Confidence            45678889999999999996 999999999999876542110000    00000 0011245799999999999999999


Q ss_pred             EEeCCceEEEEEEEEEeecCC
Q psy12695        229 AKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       229 a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      |.|.   ....+.|.|...+.
T Consensus       309 a~N~---~~~~~~L~V~~~p~  326 (527)
T 3qs9_E          309 SSKH---PSQSALVTIVEKGF  326 (527)
T ss_dssp             ETTE---EEEEEEEEEC--CE
T ss_pred             EEeC---CCceEEEEEEccCc
Confidence            9988   56777888876553

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.51  E-value=1.2e-07  Score=84.52  Aligned_cols=79  Identities=16%  Similarity=0.110  Sum_probs=51.3

Q ss_pred             ceEEEecCCCCC-ccCCCC----CCCccEEEeecceeCh-------hhccCCcccCeeeccCCcccccCCcccccccccc
Q psy12695         47 KETVLCKAKNFT-TIPEQL----DVGTQVLDLSDNFLDR-------YTFRKLINLVELDLSYNQIQFVPSHILDSILELR  114 (369)
Q Consensus        47 ~~~~~c~~~~l~-~ip~~~----~~~~~~L~l~~n~i~~-------~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~  114 (369)
                      .+.++.+++++. .+|..+    ...++.|+|++|+|..       ..|.++++|+.|+|++|+|+.+++..|..+++|+
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  172 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT  172 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence            445666677666 344433    3456777777777653       3445677777777777777777777777777777


Q ss_pred             cccccccceec
Q psy12695        115 ELKLSGNPIQK  125 (369)
Q Consensus       115 ~L~L~~N~l~~  125 (369)
                      .|+|++|++..
T Consensus       173 ~L~Ls~N~l~~  183 (310)
T 4glp_A          173 SLDLSDNPGLG  183 (310)
T ss_dssp             EEECCSCTTCH
T ss_pred             EEECCCCCCcc
Confidence            77777776544

>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC, H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A {Mus musculus} SCOP: b.1.1.1

Probab=98.51  E-value=5.1e-07  Score=70.40  Aligned_cols=83  Identities=18%  Similarity=0.290  Sum_probs=56.2

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeCCC-CCeEEEEeCC--e---Eeeecc-cccccCCcceEEEE--eecceeeEEEcccCC
Q psy12695        149 RPITPDVTAEENENVTLSCRATGSP-VPKIKWIFKE--K---IIANIS-SGLANMNKRQYIIK--TINSLSNLTIVAVTM  219 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g~p-~p~i~W~~~~--~---~~~~~~-~~~~~~~~~~~~~~--~~~~~~~L~I~~v~~  219 (369)
                      ...+..+.+.+|++++|.|.+.+.. ...+.|+++.  .   .+.... .........+|.+.  .......|+|.+++.
T Consensus         4 ~Q~p~~v~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~   83 (142)
T 2ol3_A            4 TQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI   83 (142)
T ss_dssp             BCCCSEEEEETTCCEEECCBCCCCCSSCEEEEEEECTTCCEEEEEEEETTCSSCCEETTEEECCBGGGTBCCEEECSCCT
T ss_pred             EecCCeEEEecCCCEEEEEEecCCcCCceEEEEEeCCCCCcEEEEEECCCCcccccCCCEEEEecCCCCEEEEEECCCCh
Confidence            3446778999999999999987655 4579999853  2   111111 11111123455552  234456899999999


Q ss_pred             CCCEEEEEEEEe
Q psy12695        220 SDSGIYTCRAKN  231 (369)
Q Consensus       220 ~D~G~Y~C~a~n  231 (369)
                      +|+|.|.|.+.+
T Consensus        84 ~Dsg~Y~C~~~~   95 (142)
T 2ol3_A           84 EDSAVYFCAMRG   95 (142)
T ss_dssp             TTCEEEEEEEEC
T ss_pred             hhCEEEEEEEEc
Confidence            999999999986

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.51  E-value=4.9e-07  Score=74.66  Aligned_cols=77  Identities=16%  Similarity=0.303  Sum_probs=52.6

Q ss_pred             ccCCeEEEEEEee-CCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecce-eeEEEcccCCCCCEEEEEEEEeCCce
Q psy12695        158 EENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL-SNLTIVAVTMSDSGIYTCRAKNGAGE  235 (369)
Q Consensus       158 ~~G~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~I~~v~~~D~G~Y~C~a~n~~g~  235 (369)
                      ..|+.+.|.|.+. |.|.|.|.|++++..+.....        .+......+. ....+..+..+|.|.|+|.|.|..|.
T Consensus       119 ~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~--------~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~  190 (201)
T 1dr9_A          119 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINT--------TVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLR  190 (201)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEE--------EEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCC
T ss_pred             CCCCeEEEEEecCCccCCCEEEEEECCEECccccc--------eEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcce
Confidence            5588999999995 999999999999876653211        1111000011 11233455678999999999999999


Q ss_pred             EEEEEEE
Q psy12695        236 VFTNISL  242 (369)
Q Consensus       236 ~~~~~~l  242 (369)
                      .++.+.+
T Consensus       191 ~s~~~~~  197 (201)
T 1dr9_A          191 VNQTFNW  197 (201)
T ss_dssp             EEEEEEE
T ss_pred             eeeEEec
Confidence            8877654

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.51  E-value=1.4e-07  Score=80.23  Aligned_cols=99  Identities=16%  Similarity=0.137  Sum_probs=61.3

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeC--CeE---eeecccccc---cCCcceEEEEe-ecceeeEEEcccCC
Q psy12695        149 RPITPDVTAEENENVTLSCRATGSPVPKIKWIFK--EKI---IANISSGLA---NMNKRQYIIKT-INSLSNLTIVAVTM  219 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~---~~~~~~~~~---~~~~~~~~~~~-~~~~~~L~I~~v~~  219 (369)
                      ...|..+.+.+|++++|.|. .+.|.+.+.|+++  +..   +........   .....++.+.. ......|.|.+++.
T Consensus         4 ~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~   82 (238)
T 2p1y_A            4 TQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATP   82 (238)
T ss_dssp             EEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCG
T ss_pred             eECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCc
Confidence            34467788999999999999 7889999999985  211   111000000   00122333332 22356899999999


Q ss_pred             CCCEEEEEEEEeCCceE-----EEEEEEEEeecC
Q psy12695        220 SDSGIYTCRAKNGAGEV-----FTNISLNVIKVE  248 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~g~~-----~~~~~l~v~~~~  248 (369)
                      +|+|.|.|.+.|..|..     .....|.|...+
T Consensus        83 ~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~  116 (238)
T 2p1y_A           83 SQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSA  116 (238)
T ss_dssp             GGCEEEEEEEEC------CEEECCCEEEEEECCC
T ss_pred             ccCeeEEEEEEeCCCccccceeCCCeEEEEeccC
Confidence            99999999999886521     123466665543

>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}

Probab=98.51  E-value=1.1e-06  Score=66.78  Aligned_cols=99  Identities=21%  Similarity=0.263  Sum_probs=62.8

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---Eeeeccc-cc--ccCCcceEEEEe-ecceeeEEEcccCC
Q psy12695        149 RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANISS-GL--ANMNKRQYIIKT-INSLSNLTIVAVTM  219 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~~-~~--~~~~~~~~~~~~-~~~~~~L~I~~v~~  219 (369)
                      ...|..+.+.+|++++|.|.+.......+.|++..  .   .+..... ..  ......++.+.. ......|+|.+++.
T Consensus         9 ~Q~p~~~~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~Rf~~~~~~~~~~sL~I~~~~~   88 (125)
T 3r8b_B            9 TQSPRNKVAVTGEKVTLSCKQTNSYFNNMYWYRQDTGHELRLIFMSHGIRNVEKGDIPDGYKASRPSQENFSLILELATP   88 (125)
T ss_dssp             EEECSEEEEETTCCEEEEEEEESCCCSEEEEEEECTTSCEEEEEEESSTTCCEECSSCTTCEEEEEETTEEEEEETTCCG
T ss_pred             EecCCeEEEcCCCcEEEEEEECCCCCCeEEEEEECCCCCcEEEEEEcCCccccCCCCCCceEEEecCCCEEEEEECCCCh
Confidence            34466788999999999999987665689999842  1   1211111 00  011123444432 24577899999999


Q ss_pred             CCCEEEEEEEEeCCceEE-EEEEEEEeec
Q psy12695        220 SDSGIYTCRAKNGAGEVF-TNISLNVIKV  247 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~g~~~-~~~~l~v~~~  247 (369)
                      +|+|.|.|.+.+...... ....|.|...
T Consensus        89 ~Dsg~Y~C~~~~~~~~~fg~GT~l~V~~~  117 (125)
T 3r8b_B           89 SQTSVYFCASGGGGTLYFGAGTRLSVLYG  117 (125)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEEEBC
T ss_pred             hhCEEEEEEEcCCCCcEECCCEEEEEeec
Confidence            999999999976532222 2245555543

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.50  E-value=3.2e-07  Score=80.42  Aligned_cols=98  Identities=18%  Similarity=0.244  Sum_probs=64.0

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCC--CCeEEEEeCC--eE---eeeccc-c----cccCCcceEEEEe--ecceeeEEEc
Q psy12695        150 PITPDVTAEENENVTLSCRATGSP--VPKIKWIFKE--KI---IANISS-G----LANMNKRQYIIKT--INSLSNLTIV  215 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~~---~~~~~~-~----~~~~~~~~~~~~~--~~~~~~L~I~  215 (369)
                      ..|..+.+.+|++++|.|.+.|.+  .+.+.|++++  ..   +..... .    .......++.+..  ......|.|.
T Consensus        31 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~  110 (282)
T 1qok_A           31 QQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLS  110 (282)
T ss_dssp             EECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             ECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEEC
Confidence            346678899999999999999875  5789999864  11   111000 0    0000123444433  2245789999


Q ss_pred             ccCCCCCEEEEEEEEeCCc---e--EEEEEEEEEeec
Q psy12695        216 AVTMSDSGIYTCRAKNGAG---E--VFTNISLNVIKV  247 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n~~g---~--~~~~~~l~v~~~  247 (369)
                      +++.+|+|.|.|.+.|..|   .  ....+.|.|...
T Consensus       111 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~  147 (282)
T 1qok_A          111 SLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSG  147 (282)
T ss_dssp             SCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC-
T ss_pred             cCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecC
Confidence            9999999999999999876   1  123356777654

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.50  E-value=4.6e-07  Score=91.44  Aligned_cols=96  Identities=28%  Similarity=0.378  Sum_probs=72.6

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ....+.+|+.++|.|.+.+.+.+ .+.|++++..+.....        ..........+.|.|.++..+|+|.|+|.|.|
T Consensus       627 ~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~--------~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  698 (816)
T 3dmk_A          627 EEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLG--------ITTSRVGRRGSVLTIEAVEASHAGNFTCHARN  698 (816)
T ss_dssp             CSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGT--------CEEEEETTTEEEEEEESCCGGGCEEEEEEEEC
T ss_pred             cccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCC--------eeEEEcCCCeeEEEEccCChhhCEEEEEEEEe
Confidence            45678899999999999876655 8999999876642111        11111223457899999999999999999999


Q ss_pred             CCceEEEEEEEEEeecCCcccCCCC
Q psy12695        232 GAGEVFTNISLNVIKVETAVAQPDP  256 (369)
Q Consensus       232 ~~g~~~~~~~l~v~~~~~~~~~~~~  256 (369)
                      ..|.....+.|.|..+|.....+..
T Consensus       699 ~~g~~~~~~~l~V~~~P~~~~~~~~  723 (816)
T 3dmk_A          699 LAGHQQFTTPLNVYVPPRWILEPTD  723 (816)
T ss_dssp             SSCEEEEEEEECEEEEEEEEECCCC
T ss_pred             CCccEEEEEEEEEEeCCceeeeccc
Confidence            9999999999999877755444433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.50  E-value=4.8e-09  Score=87.10  Aligned_cols=91  Identities=24%  Similarity=0.285  Sum_probs=61.0

Q ss_pred             ceEEEecCCCCCccCCCCC--CCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCcccccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQLD--VGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP  122 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~~--~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~  122 (369)
                      .+.++.++++++.+| .+.  ..++.|+|++|+|.  +..+..+++|+.|+|++|+|+.++  .|..+++|+.|+|++|.
T Consensus        50 L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~  126 (198)
T 1ds9_A           50 CKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             CSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEE
T ss_pred             CCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCc
Confidence            456777777777776 442  56777777777766  334556677777777777777775  46777777777777777


Q ss_pred             eecccC-CcccccCcCccc
Q psy12695        123 IQKITH-EAFINVPKLNLE  140 (369)
Q Consensus       123 l~~~~~-~~f~~l~~l~~~  140 (369)
                      |+.++. ..|..+++|...
T Consensus       127 i~~~~~~~~l~~l~~L~~L  145 (198)
T 1ds9_A          127 ITNWGEIDKLAALDKLEDL  145 (198)
T ss_dssp             CCCHHHHHHHTTTTTCSEE
T ss_pred             CCchhHHHHHhcCCCCCEE
Confidence            776654 345555554443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.50  E-value=6.8e-08  Score=86.11  Aligned_cols=78  Identities=19%  Similarity=0.174  Sum_probs=44.9

Q ss_pred             ceEEEecCCCCC-ccCCCC----CCCccEEEeecceeC--hhhccCC-----cccCeeeccCCcccccCCcccccccccc
Q psy12695         47 KETVLCKAKNFT-TIPEQL----DVGTQVLDLSDNFLD--RYTFRKL-----INLVELDLSYNQIQFVPSHILDSILELR  114 (369)
Q Consensus        47 ~~~~~c~~~~l~-~ip~~~----~~~~~~L~l~~n~i~--~~~f~~l-----~~L~~L~Ls~N~l~~i~~~~f~~l~~L~  114 (369)
                      .+.++.++++++ .+|..+    ...++.|+|++|+|.  +..|.++     ++|++|+|++|+|+.+++..|..+++|+
T Consensus        97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~  176 (312)
T 1wwl_A           97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS  176 (312)
T ss_dssp             CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred             ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence            445666666665 455543    235666666666654  2344444     5666666666666666656666666666


Q ss_pred             ccccccccee
Q psy12695        115 ELKLSGNPIQ  124 (369)
Q Consensus       115 ~L~L~~N~l~  124 (369)
                      .|+|++|++.
T Consensus       177 ~L~Ls~N~l~  186 (312)
T 1wwl_A          177 TLDLSDNPEL  186 (312)
T ss_dssp             EEECCSCTTC
T ss_pred             EEECCCCCcC
Confidence            6666666543

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.50  E-value=1.4e-07  Score=76.80  Aligned_cols=82  Identities=16%  Similarity=0.224  Sum_probs=55.6

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeec-ccccc----cCCcceEEEEe---ecceeeEEEcccCCCCCEE
Q psy12695        153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANI-SSGLA----NMNKRQYIIKT---INSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~----~~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~  224 (369)
                      ..+.+.+|+.+.|.|.+.+.|.+.+.|++++...... .....    .....++....   ..+...|.|.+++.+|+|.
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~   82 (184)
T 2ny1_B            3 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   82 (184)
T ss_dssp             CEEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred             CcEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence            3467899999999999999999999999988632211 00000    00011222111   1224569999999999999


Q ss_pred             EEEEEEeCCc
Q psy12695        225 YTCRAKNGAG  234 (369)
Q Consensus       225 Y~C~a~n~~g  234 (369)
                      |.|.+.|..|
T Consensus        83 Y~C~~~~~~~   92 (184)
T 2ny1_B           83 YICEVEDQKE   92 (184)
T ss_dssp             EEEEETTEEE
T ss_pred             EEEEEEcCCC
Confidence            9999988765

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=98.50  E-value=5.5e-07  Score=77.93  Aligned_cols=79  Identities=18%  Similarity=0.260  Sum_probs=59.9

Q ss_pred             eeeccCCeEEEEEEeeC-CCCC--eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEccc---CCCCCEE--EE
Q psy12695        155 VTAEENENVTLSCRATG-SPVP--KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAV---TMSDSGI--YT  226 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g-~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v---~~~D~G~--Y~  226 (369)
                      ..+.+|+.++|.|.+.| .|.|  .+.|++++..+...             +  ......+.+..+   +.+|+|.  |+
T Consensus        13 ~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~-------------~--~~~~~~~~~~~~~~~~~~d~g~g~Y~   77 (265)
T 2oz4_A           13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT-------------V--TYGNDSFSAKASVSVTAEDEGTQRLT   77 (265)
T ss_dssp             SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCE-------------E--EECSSEEEEEEEEEECGGGCEEEEEE
T ss_pred             ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCce-------------E--eeCCCeEEEEeecccccccCCcceEE
Confidence            46889999999999998 7877  99999999765420             0  011224444444   7788885  99


Q ss_pred             EEEEeCCceEEEEEEEEEeecC
Q psy12695        227 CRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       227 C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      |.+.|..|.....+.|.|...+
T Consensus        78 C~a~n~~~~~~~~~~l~V~~~p   99 (265)
T 2oz4_A           78 CAVILGNQSQETLQTVTIYSFP   99 (265)
T ss_dssp             EEEEETTEEEEEEEEEEEECCC
T ss_pred             EEEecCCCCcEEEEEEEEeCCC
Confidence            9999999998888999997644

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.50  E-value=8.4e-08  Score=80.57  Aligned_cols=82  Identities=21%  Similarity=0.253  Sum_probs=53.6

Q ss_pred             CeeeccCCeEEEEEEeeC-CCCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        154 DVTAEENENVTLSCRATG-SPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g-~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ...+.+|+.++|.|.+.| .|.| .|.|++++..+........... ..+.     ..+.|.|.. ...|.|.|+|.|.|
T Consensus       133 ~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~-~~~~-----~~s~L~i~~-~~~d~g~Y~C~a~n  205 (219)
T 1c1e_H          133 GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQS-DLYT-----LSSSVTVPS-SPRPSETVTCNVAH  205 (219)
T ss_dssp             CSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEESS-SCEE-----EEEEEEEES-SSTTTSCCEEEEEE
T ss_pred             ccccccCCeEEEEEEcccccCCCeEEEEEeCCcccceEecCCcccC-CeEE-----EEEEEEEec-ccCCCCEEEEEEEe
Confidence            345678999999999998 8999 9999998865321111000000 1111     135788844 44466999999999


Q ss_pred             CCceEEEEEEE
Q psy12695        232 GAGEVFTNISL  242 (369)
Q Consensus       232 ~~g~~~~~~~l  242 (369)
                      ..|.......+
T Consensus       206 ~~~~~~~~~~i  216 (219)
T 1c1e_H          206 PASSTKVDKKI  216 (219)
T ss_dssp             GGGTEEEEEEC
T ss_pred             CCCCccEEEec
Confidence            98876554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.50  E-value=8.5e-08  Score=90.97  Aligned_cols=60  Identities=27%  Similarity=0.198  Sum_probs=24.4

Q ss_pred             CccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCcccc-cccccccccccccceecc
Q psy12695         67 GTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILD-SILELRELKLSGNPIQKI  126 (369)
Q Consensus        67 ~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~-~l~~L~~L~L~~N~l~~~  126 (369)
                      .++.|+|++|+|.   +..|.++++|+.|+|++|+|+.+++..|. .+++|+.|+|++|.|+.+
T Consensus       121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            3444444444432   22344444444444444444443333332 334444444444444433

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.50  E-value=3.4e-07  Score=76.09  Aligned_cols=97  Identities=14%  Similarity=0.149  Sum_probs=60.6

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCCCe---EEEEeCCeEeeecc------cccc---cCCcceEEEE---eecceeeEEEc
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPVPK---IKWIFKEKIIANIS------SGLA---NMNKRQYIIK---TINSLSNLTIV  215 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~p~---i~W~~~~~~~~~~~------~~~~---~~~~~~~~~~---~~~~~~~L~I~  215 (369)
                      .+..+++.+|++++|.|.+.+.|.+.   |.|++++.......      ....   .....++...   .....+.|.|.
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            35678899999999999999988764   89998764321100      0000   0000011110   11234579999


Q ss_pred             ccCCCCCEEEEEEEEeCCceEEE-EEEEEEeec
Q psy12695        216 AVTMSDSGIYTCRAKNGAGEVFT-NISLNVIKV  247 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n~~g~~~~-~~~l~v~~~  247 (369)
                      +++.+|+|.|.|.+.+..+.... ...+.+...
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~  117 (218)
T 4frw_A           85 NAVQADEGEYECRVSTFPAGSFQARLRLRVLVP  117 (218)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC
T ss_pred             eccHHHCCceeEEEEeccCceeeeEEEEEEeee
Confidence            99999999999999887665443 344444433

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.50  E-value=6.5e-07  Score=75.57  Aligned_cols=95  Identities=17%  Similarity=0.270  Sum_probs=63.1

Q ss_pred             CCCeeeccCCeEEEEEEeeCCC--CCeEEEEeCC--eEe---eeccc--c-c--ccCCcceEEEEee--cceeeEEEccc
Q psy12695        152 TPDVTAEENENVTLSCRATGSP--VPKIKWIFKE--KII---ANISS--G-L--ANMNKRQYIIKTI--NSLSNLTIVAV  217 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~~~---~~~~~--~-~--~~~~~~~~~~~~~--~~~~~L~I~~v  217 (369)
                      +..+.+.+|++++|.|.+.+.+  .+.+.|+++.  ...   .....  . .  ......++.+...  .....|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (225)
T 1op3_H            7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM   86 (225)
T ss_dssp             ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCC
Confidence            4567899999999999999877  6789999853  211   11100  0 0  0011234444332  34578999999


Q ss_pred             CCCCCEEEEEEEEeCCc-----e---EEEEEEEEEee
Q psy12695        218 TMSDSGIYTCRAKNGAG-----E---VFTNISLNVIK  246 (369)
Q Consensus       218 ~~~D~G~Y~C~a~n~~g-----~---~~~~~~l~v~~  246 (369)
                      +.+|+|.|.|.+.|..|     .   ....+.|.|..
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~  123 (225)
T 1op3_H           87 RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSP  123 (225)
T ss_dssp             CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEES
T ss_pred             ChhhCEEEEEEEecCCCccccccceeecCCEEEeccc
Confidence            99999999999999865     2   12345777765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.49  E-value=1.6e-07  Score=82.90  Aligned_cols=91  Identities=21%  Similarity=0.226  Sum_probs=67.0

Q ss_pred             ceEEEecCCCCCccCCCC--CCCccEEEeecceeCh-hhccCCcccCeeeccCCcccccCCcccccccccccccccccce
Q psy12695         47 KETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI  123 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l  123 (369)
                      .+.++++++.++.+|. +  ...++.|+|++|+|.. ..|.++++|+.|+|++|+|+.+  ..|..+++|+.|+|++|.|
T Consensus        92 L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l  168 (291)
T 1h6t_A           92 LGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI  168 (291)
T ss_dssp             CCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred             CCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence            5678888888887765 3  3568888888888663 4577788888888888888877  3577788888888888888


Q ss_pred             ecccCCcccccCcCccccc
Q psy12695        124 QKITHEAFINVPKLNLEDF  142 (369)
Q Consensus       124 ~~~~~~~f~~l~~l~~~~~  142 (369)
                      +.+++  |..+++|...++
T Consensus       169 ~~~~~--l~~l~~L~~L~L  185 (291)
T 1h6t_A          169 SDIVP--LAGLTKLQNLYL  185 (291)
T ss_dssp             CCCGG--GTTCTTCCEEEC
T ss_pred             ccchh--hcCCCccCEEEC
Confidence            87765  666666554433

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X*

Probab=98.49  E-value=6.9e-07  Score=66.97  Aligned_cols=97  Identities=19%  Similarity=0.278  Sum_probs=59.9

Q ss_pred             CCCeeeccCCeEEEEEEeeC--CCCCeEEEEeCC-eE------eeecccc-cccCCcceEEEE--eecceeeEEEcccCC
Q psy12695        152 TPDVTAEENENVTLSCRATG--SPVPKIKWIFKE-KI------IANISSG-LANMNKRQYIIK--TINSLSNLTIVAVTM  219 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g--~p~p~i~W~~~~-~~------~~~~~~~-~~~~~~~~~~~~--~~~~~~~L~I~~v~~  219 (369)
                      +..+.+.+|++++|.|...+  .....+.|+++. ..      +...... .......++.+.  .......|+|.+++.
T Consensus         3 ~~~v~~~~G~~vtL~C~~~~~~~~~~~v~W~r~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~   82 (116)
T 3bia_X            3 EDTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNR   82 (116)
T ss_dssp             CEEEEEETTSCEEECCBCTTCCTTTCEEEEEESSCCSSSCTTEEEEECSSSEEEESSTTEEECSCGGGTBCCEEECSCCG
T ss_pred             ccEEEEeeCCcEEEEEEeeCCCCCeEEEEEeeecCCCCCCceEEEEECCcccccccCceEEEeccCCCCEEEEEEccCCh
Confidence            35678899999999999873  233469999875 21      1111110 001111233332  233456899999999


Q ss_pred             CCCEEEEEEEEeCC--ceEEEEEEEEEeecC
Q psy12695        220 SDSGIYTCRAKNGA--GEVFTNISLNVIKVE  248 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~--g~~~~~~~l~v~~~~  248 (369)
                      +|+|.|.|.+....  ......+.|.|...+
T Consensus        83 ~Dsg~Y~C~v~~~~~~~~~~~~v~L~V~~~~  113 (116)
T 3bia_X           83 GDSGVYCCRIEVPGWFNDVKKNVRLELRRAL  113 (116)
T ss_dssp             GGCEEEEEEEECSSSSCCEEEEEEEEEECC-
T ss_pred             hHCEEEEEEEEcCCcccceEEEEEEEEecCC
Confidence            99999999997532  233556777776543

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=98.49  E-value=5.9e-07  Score=79.40  Aligned_cols=77  Identities=22%  Similarity=0.294  Sum_probs=59.1

Q ss_pred             CeeeccCCeEEEEEEee-CCCCCeEEEEeCCeEeeecccccccCCcceEEEEee--cceeeEEEcccCCCCCEEEEEEEE
Q psy12695        154 DVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTI--NSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      ...+.+|+.+.|.|.+. +.|.+.+.|++++..+....         ++.+...  .....|.|.+++.+|+|.|.|.+.
T Consensus       116 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~---------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  186 (312)
T 2y23_A          116 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGP---------KYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ  186 (312)
T ss_dssp             EEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSS---------SCEEEEETTTTEEEEEESCCCGGGCEEEEEEEE
T ss_pred             ceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCC---------cEEEEEccCCCEEEEEEccCCcccCEeEEEEEE
Confidence            67889999999999998 89999999999998775321         2222221  334569999999999999999998


Q ss_pred             eCCceEEEE
Q psy12695        231 NGAGEVFTN  239 (369)
Q Consensus       231 n~~g~~~~~  239 (369)
                      |..+.....
T Consensus       187 ~~~~~~~~~  195 (312)
T 2y23_A          187 DGKATNHST  195 (312)
T ss_dssp             SSSCEEEEE
T ss_pred             eCCceEEEE
Confidence            765554433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.49  E-value=6.1e-08  Score=91.94  Aligned_cols=75  Identities=15%  Similarity=0.149  Sum_probs=53.9

Q ss_pred             CccEEEeecceeChhhccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCccc-ccCcCcccc
Q psy12695         67 GTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFI-NVPKLNLED  141 (369)
Q Consensus        67 ~~~~L~l~~n~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~-~l~~l~~~~  141 (369)
                      .++.|+|++|.|.......+++|+.|+|++|+|+.+++..|..+++|+.|+|++|.|+.+.+..|. .++.|...+
T Consensus       100 ~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~  175 (487)
T 3oja_A          100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (487)
T ss_dssp             TCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             CcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence            344444444444444455677888999999999988888888889999999999999887766664 566654443

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.49  E-value=5.2e-07  Score=78.90  Aligned_cols=101  Identities=19%  Similarity=0.299  Sum_probs=65.9

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--eE---eeeccc---ccc--cCCcceEEEEe-ecceeeEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--KI---IANISS---GLA--NMNKRQYIIKT-INSLSNLTI  214 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~---~~~~~~---~~~--~~~~~~~~~~~-~~~~~~L~I  214 (369)
                      +.+...+..+.+.+|++++|.|.+.+.+.+.+.|++++  ..   +.....   ...  .....++.+.. ......|.|
T Consensus        25 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I  104 (279)
T 2wbj_D           25 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV  104 (279)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEE
T ss_pred             ceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEE
Confidence            34445567889999999999999998888899999864  11   111000   000  01123454432 234568999


Q ss_pred             cccCCCCCEEEEEEEEeCCc------eEEEEEEEEEee
Q psy12695        215 VAVTMSDSGIYTCRAKNGAG------EVFTNISLNVIK  246 (369)
Q Consensus       215 ~~v~~~D~G~Y~C~a~n~~g------~~~~~~~l~v~~  246 (369)
                      .+++.+|+|.|.|.+.|..|      .....+.|.|..
T Consensus       105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~  142 (279)
T 2wbj_D          105 TSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTE  142 (279)
T ss_dssp             SSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEES
T ss_pred             ccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEec
Confidence            99999999999999999421      112235666665

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.49  E-value=5e-07  Score=79.11  Aligned_cols=101  Identities=14%  Similarity=0.203  Sum_probs=64.7

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeC-CC-CCeEEEEeCC--eEee---ecccccccCCcceEEEEeecceeeEEEccc
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATG-SP-VPKIKWIFKE--KIIA---NISSGLANMNKRQYIIKTINSLSNLTIVAV  217 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g-~p-~p~i~W~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v  217 (369)
                      .+.+...+. +.+.+|++++|.|.+.+ .+ .+.+.|++..  ....   ............++..........|.|.++
T Consensus       140 ~~~v~~~p~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v  218 (280)
T 3fku_X          140 QPGLTQPPS-VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGL  218 (280)
T ss_dssp             CCSBBCCSE-EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSC
T ss_pred             eeEEEeCCc-EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCC
Confidence            344444455 88999999999999988 44 3789999842  2111   111111111124555555556678999999


Q ss_pred             CCCCCEEEEEEEEeCCc--e-EEEEEEEEEee
Q psy12695        218 TMSDSGIYTCRAKNGAG--E-VFTNISLNVIK  246 (369)
Q Consensus       218 ~~~D~G~Y~C~a~n~~g--~-~~~~~~l~v~~  246 (369)
                      +.+|+|.|+|.+.|..+  . ......|.|..
T Consensus       219 ~~~DsG~Y~C~~~~~~~~~~~~g~~t~l~V~~  250 (280)
T 3fku_X          219 QPEDEADYYCSTWDSSLSAVVFGGGTKLTVLG  250 (280)
T ss_dssp             CGGGCSEEEEEEEETTTTEEEEBCCCEEEEC-
T ss_pred             CHHHCEEEEEEEecCCCCceEECCCEEEEECC
Confidence            99999999999999762  2 22334566644

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.49  E-value=4.2e-07  Score=75.77  Aligned_cols=98  Identities=18%  Similarity=0.301  Sum_probs=64.9

Q ss_pred             CCCCeeeccCCeEEEEEEeeCC-------CCCeEEEEeCCeEe-----ee-cccc--cccCCcceEEEEe--ecceeeEE
Q psy12695        151 ITPDVTAEENENVTLSCRATGS-------PVPKIKWIFKEKII-----AN-ISSG--LANMNKRQYIIKT--INSLSNLT  213 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~-------p~p~i~W~~~~~~~-----~~-~~~~--~~~~~~~~~~~~~--~~~~~~L~  213 (369)
                      .|..+.+.+|+.++|.|.+.+.       +.+.+.|++++...     .. ....  .......++.+..  ......|.
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~   85 (214)
T 2zg1_A            6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLS   85 (214)
T ss_dssp             CCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEE
T ss_pred             CCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEE
Confidence            4567889999999999999764       56789999986421     10 0000  0001122343322  12356899


Q ss_pred             EcccCCCCCEEEEEEEEeCCceEE----EEEEEEEeecC
Q psy12695        214 IVAVTMSDSGIYTCRAKNGAGEVF----TNISLNVIKVE  248 (369)
Q Consensus       214 I~~v~~~D~G~Y~C~a~n~~g~~~----~~~~l~v~~~~  248 (369)
                      |.+++.+|+|.|.|.+.+..+...    ..+.|.|...+
T Consensus        86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~  124 (214)
T 2zg1_A           86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALI  124 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCC
T ss_pred             EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCC
Confidence            999999999999999999874432    35777777643

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.49  E-value=7.4e-07  Score=76.76  Aligned_cols=96  Identities=18%  Similarity=0.194  Sum_probs=60.8

Q ss_pred             CCCeeeccCCeEEEEEEeeCC--CCCeEEEEeCC--eE--ee-ec-ccc---cccCCcceEEEEee--cceeeEEEcccC
Q psy12695        152 TPDVTAEENENVTLSCRATGS--PVPKIKWIFKE--KI--IA-NI-SSG---LANMNKRQYIIKTI--NSLSNLTIVAVT  218 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~--p~p~i~W~~~~--~~--~~-~~-~~~---~~~~~~~~~~~~~~--~~~~~L~I~~v~  218 (369)
                      +..+.+.+|++++|.|.+.+.  +.+.+.|++..  ..  .. .. ...   .......++.+...  .....|.|.+++
T Consensus        15 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   94 (257)
T 3gkz_A           15 SGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVS   94 (257)
T ss_dssp             ECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCC
Confidence            456779999999999999884  47789999842  11  11 00 000   00011234444322  345689999999


Q ss_pred             CCCCEEEEEEEEeC----CceEEEEEEEEEeec
Q psy12695        219 MSDSGIYTCRAKNG----AGEVFTNISLNVIKV  247 (369)
Q Consensus       219 ~~D~G~Y~C~a~n~----~g~~~~~~~l~v~~~  247 (369)
                      .+|+|.|.|.+.|.    .+.....+.|.|...
T Consensus        95 ~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~  127 (257)
T 3gkz_A           95 SEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGG  127 (257)
T ss_dssp             GGGCEEEEEEEECTTCTTCEEECCCEEEEEC--
T ss_pred             hhhCEEEEEEEecCCCcceeEEcCCEEEeecCc
Confidence            99999999999997    222334456777654

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.49  E-value=5.8e-07  Score=77.42  Aligned_cols=95  Identities=19%  Similarity=0.295  Sum_probs=62.5

Q ss_pred             CCCeeeccCCeEEEEEEeeCCC--CCeEEEEeCC--eE---eeecc-----cccccCCcceEEEEee--cceeeEEEccc
Q psy12695        152 TPDVTAEENENVTLSCRATGSP--VPKIKWIFKE--KI---IANIS-----SGLANMNKRQYIIKTI--NSLSNLTIVAV  217 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~~---~~~~~-----~~~~~~~~~~~~~~~~--~~~~~L~I~~v  217 (369)
                      +..+.+.+|++++|.|.+.+.+  .+.+.|++..  ..   +....     .........++.+...  .....|.|.++
T Consensus         9 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (256)
T 3umt_A            9 SGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSL   88 (256)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             cCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCC
Confidence            4557799999999999999876  6789999742  11   11000     0000011234444332  34567999999


Q ss_pred             CCCCCEEEEEEEEeC----CceEEEEEEEEEee
Q psy12695        218 TMSDSGIYTCRAKNG----AGEVFTNISLNVIK  246 (369)
Q Consensus       218 ~~~D~G~Y~C~a~n~----~g~~~~~~~l~v~~  246 (369)
                      +.+|+|.|.|.+.|.    .+.....+.|.|..
T Consensus        89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~  121 (256)
T 3umt_A           89 TSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSS  121 (256)
T ss_dssp             CGGGCEEEEEEECCSTTCCSCEECCCEEEEECC
T ss_pred             CcccCEEEEEEEccCCCccccEECCCEEEEEcC
Confidence            999999999999987    34444556777764

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.49  E-value=9.6e-08  Score=79.73  Aligned_cols=79  Identities=18%  Similarity=0.261  Sum_probs=54.6

Q ss_pred             CCeeeccCCeEEEEEEeeC-CCCC-eEEEEeCCeEeeec-cc--ccccCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695        153 PDVTAEENENVTLSCRATG-SPVP-KIKWIFKEKIIANI-SS--GLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g-~p~p-~i~W~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      ....+..|+.+.|.|.+.| .|.+ .+.|++++..+... ..  .........+.     ..+.|.|.++..+|+|.|+|
T Consensus       120 ~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~-----~~s~L~i~~~~~~d~G~Y~C  194 (213)
T 3d9a_L          120 PSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYS-----MSSTLTLTKDEYERHNSYTC  194 (213)
T ss_dssp             CCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEE-----EEEEEEEEHHHHHHCCEEEE
T ss_pred             CChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEE-----EEEEEEEeccccCCCCEEEE
Confidence            3334457999999999987 6665 79999999876532 00  00001111221     14589999999999999999


Q ss_pred             EEEeCCceE
Q psy12695        228 RAKNGAGEV  236 (369)
Q Consensus       228 ~a~n~~g~~  236 (369)
                      .|.|.....
T Consensus       195 ~a~n~~~~~  203 (213)
T 3d9a_L          195 EATHKTSTS  203 (213)
T ss_dssp             EEECTTCSS
T ss_pred             EEEEccCCC
Confidence            999987653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.48  E-value=2e-07  Score=82.85  Aligned_cols=92  Identities=23%  Similarity=0.324  Sum_probs=76.9

Q ss_pred             CceEEEecCCCCCccCCCC--CCCccEEEeecceeCh-hhccCCcccCeeeccCCcccccCCcccccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP  122 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~  122 (369)
                      ..+.+++.+++++.+|. +  ...++.|+|++|+|.. ..|.++++|+.|+|++|+|+.++  .|..+++|+.|+|++|.
T Consensus        42 ~L~~L~l~~~~i~~l~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~  118 (308)
T 1h6u_A           42 GITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQ  118 (308)
T ss_dssp             TCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTTSC
T ss_pred             CcCEEEeeCCCccCchh-hhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCCCC
Confidence            46789999999999884 4  4689999999999763 22999999999999999999985  58999999999999999


Q ss_pred             eecccCCcccccCcCccccc
Q psy12695        123 IQKITHEAFINVPKLNLEDF  142 (369)
Q Consensus       123 l~~~~~~~f~~l~~l~~~~~  142 (369)
                      |+.++.  |..+++|...++
T Consensus       119 l~~~~~--l~~l~~L~~L~l  136 (308)
T 1h6u_A          119 ITDVTP--LAGLSNLQVLYL  136 (308)
T ss_dssp             CCCCGG--GTTCTTCCEEEC
T ss_pred             CCCchh--hcCCCCCCEEEC
Confidence            999874  777776554433

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.48  E-value=5.9e-07  Score=77.44  Aligned_cols=101  Identities=22%  Similarity=0.322  Sum_probs=63.9

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--eE---eeecc-ccc--ccCCcceEEEEe-ecceeeEEEc
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--KI---IANIS-SGL--ANMNKRQYIIKT-INSLSNLTIV  215 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~---~~~~~-~~~--~~~~~~~~~~~~-~~~~~~L~I~  215 (369)
                      .|.+...+..+.+.+|+.++|.|.+.+. .+.+.|+++.  ..   +.... ...  ......++.... ......|.|.
T Consensus       137 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~  215 (256)
T 3tf7_C          137 EAAVTQSPRNKVTVTGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLE  215 (256)
T ss_dssp             -CCEEESCSEEEEETTCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEES
T ss_pred             ccEEEecCCEEEEeCCCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEEC
Confidence            3455566777888999999999999887 7799999842  11   11000 000  000112333322 2345689999


Q ss_pred             ccCCCCCEEEEEEEEeCCceEEE--EEEEEEee
Q psy12695        216 AVTMSDSGIYTCRAKNGAGEVFT--NISLNVIK  246 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n~~g~~~~--~~~l~v~~  246 (369)
                      +++.+|+|.|+|.|.|..|....  ...|.|..
T Consensus       216 ~v~~~DsG~Y~C~a~n~~g~~~fG~gt~l~v~~  248 (256)
T 3tf7_C          216 SASPSQTSLYFCASSDAPGQLYFGEGSKLTVLE  248 (256)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CCCHHHCEEEEEEecCCCCccEECCCeEEEEEc
Confidence            99999999999999998775322  23455543

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=98.48  E-value=2.7e-07  Score=85.96  Aligned_cols=97  Identities=19%  Similarity=0.203  Sum_probs=66.0

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeCCCCC----eEEEEeCC--eEe---eecccccccCCcceEEEEeecceeeEEEcccCC
Q psy12695        149 RPITPDVTAEENENVTLSCRATGSPVP----KIKWIFKE--KII---ANISSGLANMNKRQYIIKTINSLSNLTIVAVTM  219 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g~p~p----~i~W~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~  219 (369)
                      ...|..+.+.+|+.++|.|.+.+.|.+    .+.|++++  ..+   .............++..........|.|.+++.
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   84 (438)
T 1qgc_4            5 TQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEA   84 (438)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCcC
Confidence            344678889999999999999988874    89999963  211   111000001112345544455567899999999


Q ss_pred             CCCEEEEEEEEeCCceE-EEEEEEEEe
Q psy12695        220 SDSGIYTCRAKNGAGEV-FTNISLNVI  245 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~g~~-~~~~~l~v~  245 (369)
                      +|+|.|+|.|.|..|.. ...+.+.|.
T Consensus        85 ~D~G~Y~C~a~n~~~~~~~~~~~l~V~  111 (438)
T 1qgc_4           85 DDVATYYCQQSNEVPLTFGAGTKLDLK  111 (438)
T ss_dssp             GGCEEEEEEECSSTTCCBCCCEEEEEC
T ss_pred             cCCeeEEEEEecCCCccccCceeEEec
Confidence            99999999999987643 334556664

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.48  E-value=6.8e-07  Score=77.50  Aligned_cols=100  Identities=17%  Similarity=0.260  Sum_probs=64.5

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeC--CeE---eeecccccc----cCCcceEEEEe-ecceeeEEEc
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFK--EKI---IANISSGLA----NMNKRQYIIKT-INSLSNLTIV  215 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~---~~~~~~~~~----~~~~~~~~~~~-~~~~~~L~I~  215 (369)
                      +.+...+..+.+.+|++++|.|.+. .+.+.+.|++.  +..   +........    .....++.+.. ......|.|.
T Consensus        27 ~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~  105 (268)
T 3pl6_D           27 AGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQ  105 (268)
T ss_dssp             SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEEC
T ss_pred             ceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEEC
Confidence            4455566778999999999999986 57789999983  211   111000000    00113444332 2335789999


Q ss_pred             ccCCCCCEEEEEEEEeC--CceEEEEEEEEEee
Q psy12695        216 AVTMSDSGIYTCRAKNG--AGEVFTNISLNVIK  246 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n~--~g~~~~~~~l~v~~  246 (369)
                      +++.+|+|.|.|.+.|.  .+.......+.|..
T Consensus       106 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~  138 (268)
T 3pl6_D          106 RTERGDSAVYLCATSALGDTQYFGPGTRLTVLE  138 (268)
T ss_dssp             SCCGGGCEEEEEEEESSSSSCEECCCEEEEEES
T ss_pred             CCCcccCEEEEEEEecCCCceeeCCcEEEEEec
Confidence            99999999999999973  33444455677765

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=98.48  E-value=4.2e-07  Score=80.65  Aligned_cols=79  Identities=19%  Similarity=0.284  Sum_probs=60.7

Q ss_pred             eeeccCCeEEEEEEe------eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695        155 VTAEENENVTLSCRA------TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~------~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      ..+.+|+.+.|.|.+      .|.|.|.+.|++++..+....        .++.    ...+.|.|.+++.+|+|.|+|.
T Consensus       113 ~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~--------~~~~----~~~~~L~i~~v~~~d~G~Y~C~  180 (315)
T 1itb_B          113 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDN--------IHFS----GVKDRLIVMNVAEKHRGNYTCH  180 (315)
T ss_dssp             EEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCS--------SSEE----EETTEEEESSCCGGGCEEEEEE
T ss_pred             eEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCcc--------ceEe----ecCceEEEEeceehhCcEEEEE
Confidence            567899999999998      899999999999998764311        1111    1245899999999999999999


Q ss_pred             EE-eCCceE---EEEEEEEEe
Q psy12695        229 AK-NGAGEV---FTNISLNVI  245 (369)
Q Consensus       229 a~-n~~g~~---~~~~~l~v~  245 (369)
                      |. |..|..   ...+.+.+.
T Consensus       181 a~~n~~g~~~~~~~~~~~~~~  201 (315)
T 1itb_B          181 ASYTYLGKQYPITRVIEFITL  201 (315)
T ss_dssp             EEEEETTEEEEEEEEEEEEEE
T ss_pred             EEcCCCCcEEEEEEEEEEEEe
Confidence            99 788876   344445444

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.48  E-value=6e-07  Score=77.24  Aligned_cols=95  Identities=16%  Similarity=0.206  Sum_probs=60.9

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---Eeeecccccc---cCCcc-eEEEEeecceeeEEEcccCCCC
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANISSGLA---NMNKR-QYIIKTINSLSNLTIVAVTMSD  221 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~~~~~---~~~~~-~~~~~~~~~~~~L~I~~v~~~D  221 (369)
                      .+..+.+.+|++++|.|.+.+.+.+.+.|++..  .   .+........   ..... ++.+....... |.|.+++.+|
T Consensus         7 ~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~~D   85 (253)
T 3to4_D            7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANMSQ   85 (253)
T ss_dssp             ECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESCSS
T ss_pred             CCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCChhh
Confidence            456788999999999999999999999999832  1   1111111000   00011 44443333333 9999999999


Q ss_pred             CEEEEEEEEeCCc------eEEEEEEEEEee
Q psy12695        222 SGIYTCRAKNGAG------EVFTNISLNVIK  246 (369)
Q Consensus       222 ~G~Y~C~a~n~~g------~~~~~~~l~v~~  246 (369)
                      +|.|.|.+.+..+      .......+.|..
T Consensus        86 sG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~  116 (253)
T 3to4_D           86 GRTLYCTSSADHWTNTGQLYFGEGSKLTVLE  116 (253)
T ss_dssp             CEEEEEEEECSCCSTTCCEEECCCEEEEEES
T ss_pred             CeEEEEEEecCCCCcccceEECCCEEEEEec
Confidence            9999999987643      222334666654

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=98.48  E-value=3e-07  Score=87.91  Aligned_cols=88  Identities=11%  Similarity=0.209  Sum_probs=61.5

Q ss_pred             CeeeccCCeEEEEEEeeCC-CCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        154 DVTAEENENVTLSCRATGS-PVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ...+.+|+.+.|.|.+.|. |.| .|.|++++..+..............+.     ..+.|.|.++..+| |.|+|.|.|
T Consensus       228 ~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~-----~~s~L~i~~~~~~d-G~Y~C~a~n  301 (523)
T 2rcj_C          228 SSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYS-----LSSVVTVPSSSLGT-QTYICNVNH  301 (523)
T ss_pred             CcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEE-----EEEEEEechhhcCC-ceEEEEEEe
Confidence            3456789999999999887 878 899999987542211000000111111     14589999999999 999999999


Q ss_pred             CCceEEEEEEEEEeec
Q psy12695        232 GAGEVFTNISLNVIKV  247 (369)
Q Consensus       232 ~~g~~~~~~~l~v~~~  247 (369)
                      ..|.....+.+.|...
T Consensus       302 ~~g~~~~~~~l~v~~~  317 (523)
T 2rcj_C          302 KPSNTKVDKRVEPLSL  317 (523)
T ss_pred             CCCCcceEEecCCCcC
Confidence            9998776666665433

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.48  E-value=1.2e-07  Score=78.31  Aligned_cols=93  Identities=28%  Similarity=0.412  Sum_probs=62.7

Q ss_pred             CeeeccCCeEEEEEEee----CCCCCeEEEEeCCeEeeecccccccCC---cceEEEEeecceeeEEEcccCCCCCEEEE
Q psy12695        154 DVTAEENENVTLSCRAT----GSPVPKIKWIFKEKIIANISSGLANMN---KRQYIIKTINSLSNLTIVAVTMSDSGIYT  226 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~----g~p~p~i~W~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  226 (369)
                      .+.+.+|+.+.|.|.+.    +.|.+.+.|++++..+...........   ..+..+. ..+...|.|.+++.+|+|.|.
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~-~~~~~~L~I~~v~~~D~G~Y~   81 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD-ITNNLSIVILALRPSDEGTYE   81 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE-STTTTEEEECSCCGGGCEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc-cCCCcEEEEecccchhCeEEE
Confidence            46789999999999995    346678999999876532211110000   0111111 123568999999999999999


Q ss_pred             EEEEeCCceE-----EEEEEEEEeec
Q psy12695        227 CRAKNGAGEV-----FTNISLNVIKV  247 (369)
Q Consensus       227 C~a~n~~g~~-----~~~~~l~v~~~  247 (369)
                      |.+.|..|..     ...+.|.|...
T Consensus        82 C~~~~~~g~~~~~~~~~~~~l~V~~~  107 (201)
T 1dr9_A           82 CVVLKYEKDAFKREHLAEVTLSVKAD  107 (201)
T ss_dssp             EEEEECCTTSCEEEEEEEEEEEEECC
T ss_pred             EEEEcCCCCccccccccEEEEEEcCC
Confidence            9999977543     35667777664

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.47  E-value=4.2e-07  Score=81.99  Aligned_cols=95  Identities=15%  Similarity=0.237  Sum_probs=64.1

Q ss_pred             CCCeeeccCCeEEEEEEeeCCC--CCeEEEEeC--CeEee---eccc-c----cccCCcceEEEEee--cceeeEEEccc
Q psy12695        152 TPDVTAEENENVTLSCRATGSP--VPKIKWIFK--EKIIA---NISS-G----LANMNKRQYIIKTI--NSLSNLTIVAV  217 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~--~~~~~---~~~~-~----~~~~~~~~~~~~~~--~~~~~L~I~~v  217 (369)
                      +..+.+.+|+.++|.|.+.+.+  .+.+.|+++  +..+.   .... .    .......++.+...  .....|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (344)
T 1za6_B            7 SGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSL   86 (344)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCC
Confidence            4568899999999999999874  678999986  32221   0000 0    00011234444322  34578999999


Q ss_pred             CCCCCEEEEEEEEeCCceEEEEEEEEEee
Q psy12695        218 TMSDSGIYTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       218 ~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      +.+|+|.|.|.+.|..+.....+.|.|..
T Consensus        87 ~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~  115 (344)
T 1za6_B           87 RSEDTAVYFCTRSLNMAYWGQGTLVTVSS  115 (344)
T ss_dssp             CGGGCEEEEEEETTTTCEECCCEEEEECS
T ss_pred             CcccCEEEEEEEecCcceecCcEEEEEec
Confidence            99999999999999765555556777763

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.47  E-value=2.8e-07  Score=76.88  Aligned_cols=82  Identities=16%  Similarity=0.263  Sum_probs=54.8

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeeccccc--ccCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP--KIKWIFKEKIIANISSGL--ANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      ....+..|+.++|.|.+.|.+++  .|.|++++..+.......  .......+.     ..+.|.|..+..+|+|.|+|.
T Consensus       123 ~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~-----~~s~L~i~~~~~~d~g~Y~C~  197 (212)
T 1q0x_L          123 PSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYM-----ASSYLTLTARAWERHSSYSCQ  197 (212)
T ss_dssp             CCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEE-----EEEEEEEEHHHHTTCCEEEEE
T ss_pred             CCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEE-----EEEEEEEcHHHccCCCcEEEE
Confidence            33344579999999999885443  799999988764321100  000111111     135799999999999999999


Q ss_pred             EEeCCceEEEE
Q psy12695        229 AKNGAGEVFTN  239 (369)
Q Consensus       229 a~n~~g~~~~~  239 (369)
                      |.|.......+
T Consensus       198 a~n~~~~~~~~  208 (212)
T 1q0x_L          198 VTHEGHSSNKT  208 (212)
T ss_dssp             EEETTEEEEEE
T ss_pred             EEeCCcceeee
Confidence            99987664444

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.47  E-value=9e-07  Score=74.42  Aligned_cols=95  Identities=20%  Similarity=0.246  Sum_probs=62.9

Q ss_pred             CCCeeeccCCeEEEEEEeeCCC--CCeEEEEeCC--eE---eeecccc-----cccCCcceEEEEee--cceeeEEEccc
Q psy12695        152 TPDVTAEENENVTLSCRATGSP--VPKIKWIFKE--KI---IANISSG-----LANMNKRQYIIKTI--NSLSNLTIVAV  217 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~~---~~~~~~~-----~~~~~~~~~~~~~~--~~~~~L~I~~v  217 (369)
                      +..+.+.+|++++|.|.+.+.+  .+.+.|+++.  ..   +......     .......++.+...  .+...|.|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (220)
T 2fbj_H            7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence            4568899999999999999876  5789999853  11   1111100     00011235544332  34568999999


Q ss_pred             CCCCCEEEEEEEEeCCce---EEEEEEEEEee
Q psy12695        218 TMSDSGIYTCRAKNGAGE---VFTNISLNVIK  246 (369)
Q Consensus       218 ~~~D~G~Y~C~a~n~~g~---~~~~~~l~v~~  246 (369)
                      +.+|+|.|.|.+.+..+.   ....+.|.|..
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~  118 (220)
T 2fbj_H           87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSA  118 (220)
T ss_dssp             CGGGCEEEEEEEEETTTEEEEECCCEEEEECS
T ss_pred             ChhhCEEEEEEEeccccccceecCCEEEEecC
Confidence            999999999999997653   22335677764

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.47  E-value=7.1e-07  Score=74.88  Aligned_cols=95  Identities=22%  Similarity=0.341  Sum_probs=62.2

Q ss_pred             CCCeeeccCCeEEEEEEeeCCC--CCeEEEEeCC--eE---eeeccc--cc----c-cCCcceEEEEee--cceeeEEEc
Q psy12695        152 TPDVTAEENENVTLSCRATGSP--VPKIKWIFKE--KI---IANISS--GL----A-NMNKRQYIIKTI--NSLSNLTIV  215 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~~---~~~~~~--~~----~-~~~~~~~~~~~~--~~~~~L~I~  215 (369)
                      +..+.+.+|++++|.|.+.+.+  .+.+.|++++  ..   +.....  ..    . ..-..++.+...  .+...|.|.
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (220)
T 1pz5_B            7 SGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMN   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             cCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEc
Confidence            4667899999999999999876  6789999853  11   111110  00    0 000234444332  245589999


Q ss_pred             ccCCCCCEEEEEEEEeCCceE-E--EEEEEEEee
Q psy12695        216 AVTMSDSGIYTCRAKNGAGEV-F--TNISLNVIK  246 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n~~g~~-~--~~~~l~v~~  246 (369)
                      +++.+|+|.|.|.+.|..+.. .  ..+.|.|..
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  120 (220)
T 1pz5_B           87 NLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSS  120 (220)
T ss_dssp             SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECS
T ss_pred             cCCHHHCEEEEEEEecCCcccceECCCEEEEEcc
Confidence            999999999999999976432 1  345666653

>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell surface receptor, triggering receptor, platelet receptor, ITIM, immune system; 1.19A {Homo sapiens}

Probab=98.47  E-value=1.7e-06  Score=63.70  Aligned_cols=94  Identities=16%  Similarity=0.258  Sum_probs=58.4

Q ss_pred             CCCeeeccCCeEEEEEEeeCC-CCCeEEEEeC--Ce--EeeecccccccCCcceEEEE-eecceeeEEEcccCCCCCEEE
Q psy12695        152 TPDVTAEENENVTLSCRATGS-PVPKIKWIFK--EK--IIANISSGLANMNKRQYIIK-TINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~--~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |..+.+.+|++++|.|..... ....+.|+++  ++  .+.............++.+. ...+...|+|.+++.+|+|.|
T Consensus         4 p~~v~~~~G~svtl~C~~s~~~~~~~~~Wyrq~~g~~~~li~~~~~~~~~~~~R~s~~~~~~~~~~L~I~~l~~~Dsg~Y   83 (106)
T 2frg_P            4 PEVLQAPVGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGGLLQVEMVTLQEEDAGEY   83 (106)
T ss_dssp             CEEEEECTTCCEEEEEECCGGGTTSEEEEEEEETTEEEEEEECCBTCEEEETTTEEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CcEEEEecCCcEEEEeEecCCcccCcEEEEECCCCCCcEEEEeCCcEeeecCCCEEEEcCCCCEEEEEEccCCHHHCEEE
Confidence            456778999999999998632 2335789984  22  11111111111113345442 234457899999999999999


Q ss_pred             EEEEEeCCceE-EEEEEEEEe
Q psy12695        226 TCRAKNGAGEV-FTNISLNVI  245 (369)
Q Consensus       226 ~C~a~n~~g~~-~~~~~l~v~  245 (369)
                      .|.+....+.. ...+.|.|.
T Consensus        84 ~C~~~~~~~~d~~~~v~L~V~  104 (106)
T 2frg_P           84 GCMVDGARGPQILHRVSLNIL  104 (106)
T ss_dssp             EEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEeecCCCCCEeEEEEEEEe
Confidence            99998776443 344555553

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.47  E-value=7.9e-08  Score=80.94  Aligned_cols=80  Identities=21%  Similarity=0.275  Sum_probs=54.9

Q ss_pred             eeccCCeEEEEEEeeCC-CCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        156 TAEENENVTLSCRATGS-PVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       156 ~~~~G~~~~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      .+.+|+.++|.|.+.|. |.| .+.|++++..+......... ....+.     ..+.|.|.++..+| |.|+|.|.|..
T Consensus       138 ~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~-~~~~~~-----~~s~L~i~~~~~~d-g~y~C~a~n~~  210 (222)
T 1q9r_B          138 AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVL-QSDLYT-----LSSSVTVPSSTWPS-ETVTCNVAHPA  210 (222)
T ss_dssp             CCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEEEEEE-ETTEEE-----EEEEEEEETTTTTT-SCCEEEEEEGG
T ss_pred             cccCCCcEEEEEEEccEECCCCEEEEecCCeEcceEeccccc-cCCcEE-----EEEEEEECchhcCC-CeEEEEEEccC
Confidence            45689999999999985 888 99999987653211000000 001121     13579999999899 99999999999


Q ss_pred             ceEEEEEEE
Q psy12695        234 GEVFTNISL  242 (369)
Q Consensus       234 g~~~~~~~l  242 (369)
                      |.......+
T Consensus       211 ~~~~~~~~i  219 (222)
T 1q9r_B          211 SSTKVDKKI  219 (222)
T ss_dssp             GTEEEEEEC
T ss_pred             CCCcEEEec
Confidence            876544433

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.46  E-value=4.7e-07  Score=77.87  Aligned_cols=97  Identities=16%  Similarity=0.228  Sum_probs=63.3

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCC--CCeEEEEeC--CeEeeec---c-----cccccCCcceEEEEee--cceeeEEEc
Q psy12695        150 PITPDVTAEENENVTLSCRATGSP--VPKIKWIFK--EKIIANI---S-----SGLANMNKRQYIIKTI--NSLSNLTIV  215 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~--~~~~~~~---~-----~~~~~~~~~~~~~~~~--~~~~~L~I~  215 (369)
                      ..+..+.+.+|++++|.|.+.|.+  .+.+.|++.  +......   .     .........++.+...  .....|.|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   85 (253)
T 3uzq_A            6 EQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLS   85 (253)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             ecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeC
Confidence            346778899999999999998854  678999983  2111100   0     0000011224444322  235569999


Q ss_pred             ccCCCCCEEEEEEEEeCCceEE-EEEEEEEee
Q psy12695        216 AVTMSDSGIYTCRAKNGAGEVF-TNISLNVIK  246 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n~~g~~~-~~~~l~v~~  246 (369)
                      +++.+|+|.|.|.+.|..+... ..+.|.|..
T Consensus        86 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~  117 (253)
T 3uzq_A           86 SLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSA  117 (253)
T ss_dssp             SCCGGGCEEEEEEECSSSCCEECCCEEEEECS
T ss_pred             CCCcccCEEEEEEEeeCCccEECCCcEEEEec
Confidence            9999999999999999766543 446677764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.46  E-value=2.1e-07  Score=82.08  Aligned_cols=92  Identities=23%  Similarity=0.239  Sum_probs=74.6

Q ss_pred             CceEEEecCCCCCccCCCC--CCCccEEEeecceeC-hhhccCCcccCeeeccCCcccccCCcccccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLD-RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP  122 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~  122 (369)
                      ..+.++++++.++.++. +  ...++.|+|++|+|. ...|.++++|+.|+|++|+|+.++  .|..+++|+.|+|++|.
T Consensus        69 ~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~  145 (291)
T 1h6t_A           69 NVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNK  145 (291)
T ss_dssp             TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSC
T ss_pred             CCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCCh--hhcCCCCCCEEEccCCc
Confidence            35789999999998876 4  357899999999976 345889999999999999999884  57889999999999999


Q ss_pred             eecccCCcccccCcCccccc
Q psy12695        123 IQKITHEAFINVPKLNLEDF  142 (369)
Q Consensus       123 l~~~~~~~f~~l~~l~~~~~  142 (369)
                      |+.+  ..|..+++|...++
T Consensus       146 l~~~--~~l~~l~~L~~L~L  163 (291)
T 1h6t_A          146 ITDI--TVLSRLTKLDTLSL  163 (291)
T ss_dssp             CCCC--GGGGGCTTCSEEEC
T ss_pred             CCcc--hhhccCCCCCEEEc
Confidence            9988  36777777655444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	369
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	3e-16
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	7e-16
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	3e-15
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	4e-15
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	2e-14
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	5e-14
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	8e-14
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	9e-14
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-13
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	6e-13
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	8e-13
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	1e-12
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-12
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	3e-12
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	2e-11
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	4e-11
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	5e-11
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	7e-11
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	8e-11
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	9e-11
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	9e-11
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	1e-10
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	1e-10
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	3e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-04
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	2e-09
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	4e-09
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	4e-09
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	4e-09
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	1e-08
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	2e-08
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	3e-08
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	3e-08
d2nxyb1	97	b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Ho	3e-08
d1dr9a1	105	b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (	4e-08
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	4e-08
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	4e-08
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	6e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-08
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	8e-08
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	8e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	2e-07
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	2e-07
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	5e-07
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	5e-07
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	5e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	7e-07
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	1e-06
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	2e-06
d1ncna_	110	b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human	2e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-06
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	4e-06
d1xeda_	116	b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PI	6e-06
d1l6za1	107	b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C	9e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d2g5ra1	121	b.1.1.1 (A:24-144) N-terminal domain of sialic aci	1e-05
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	2e-05
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	2e-05
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-05
d1lk3l1	106	b.1.1.1 (L:1-106) Immunoglobulin light chain kappa	5e-05
d1neua_	119	b.1.1.1 (A:) Myelin membrane adhesion molecule P0	7e-05
d1biha2	111	b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	1e-04
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	1e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-04
d1vcaa2	90	b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1qfoa_	118	b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mo	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2aq2a1	110	b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (	4e-04
d1nezg_	122	b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 100	4e-04
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	4e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-04
d1sq2n_	112	b.1.1.1 (N:) Novel antigen receptor (against lysoz	7e-04
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	7e-04
d8faba1	103	b.1.1.1 (A:3-105) Immunoglobulin light chain lambd	7e-04
d1h5ba_	113	b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus m	9e-04
d2nxyb2	84	b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (H	0.001
d2rhea_	114	b.1.1.1 (A:) Immunoglobulin light chain lambda var	0.001
d1fnla1	84	b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1q0xl2	102	b.1.1.2 (L:108-212) Immunoglobulin light chain lam	0.003

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 3e-16
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 8/91 (8%)

Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTI 214
                   V   C A G+P+P ++W+   K              R    K  N   +L +
Sbjct: 15  HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF--------KQEHRIGGYKVRNQHWSLIM 66

Query: 215 VAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
            +V  SD G YTC  +N  G +     L+V+
Sbjct: 67  ESVVPSDKGNYTCVVENEYGSINHTYHLDVV 97

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (171), Expect = 7e-16
 Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 9/100 (9%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P I     D      E+V L  + TG+      W+   K I                ++ 
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQI---------QESEHMKVEN 51

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
             + S LTI+A      G YT   +N  G     ++L V+
Sbjct: 52  SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 91

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 1e-15
 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 5/105 (4%)

Query: 146 PNIRPITP-DVTAEENENVTLSCRATGSPVPKIKWIFKEKI----IANISSGLANMNKRQ 200
           P ++   P + +     +V   C+      P I+WI   +               + K  
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
            +  T   +  L I  VT  D+G YTC A N  G  F +  L V+
Sbjct: 65  GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.5 bits (179), Expect = 3e-15
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 7/107 (6%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLVE 91
           CP  C+C  +     V C       +P+ L   T +LDL +N +       F+ L NL  
Sbjct: 4   CPFRCQCHLR----VVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT 59

Query: 92  LDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLN 138
           L L  N+I  +       +++L  L LS N ++++  +    + +L 
Sbjct: 60  LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR 106

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 7e-04
 Identities = 9/50 (18%), Positives = 13/50 (26%), Gaps = 6/50 (12%)

Query: 81  YTFRKLINLVELDLSYNQIQ------FVPSHILDSILELRELKLSGNPIQ 124
                   +  + L  N I       F P            + L  NP+Q
Sbjct: 236 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 82  TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLED 141
            F+ +  L  + ++   I  +P  +  S   L EL L GN I K+   +   +  L    
Sbjct: 145 AFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 142 FAC 144
            + 
Sbjct: 202 LSF 204

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 68.2 bits (166), Expect = 3e-15
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 14/97 (14%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
            +     +  ++ ++VT+ C+ TG P P + W                  K     +   
Sbjct: 6   EQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH--------------NAKPLSGGRATV 51

Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           + S L I  V   D G Y CRA N  G+ +    + V
Sbjct: 52  TDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.4 bits (166), Expect = 4e-15
 Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 19/115 (16%)

Query: 133 NVPKLNLEDFACSPNI--RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANIS 190
           NVP          P +  R    + TA   ++VTL C A G P P + W    + I N  
Sbjct: 1   NVP----------PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN-- 48

Query: 191 SGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
                  +        +  S LTI  V  +D   Y C A+N AGE   +I L V 
Sbjct: 49  -----EEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 98

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 66.0 bits (160), Expect = 2e-14
 Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 16/100 (16%)

Query: 146 PNIRPITP-DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
           P+I+   P D  A   + VTL C A G+PVP+IKW                        K
Sbjct: 5   PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWR---------------KLDGSQTSK 49

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
            ++S   L I  V   D G Y C A+N  G       + +
Sbjct: 50  WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII 89

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 5e-14
 Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
            +T  + + V L+C   G   P I+W+    ++ N       +++    +   + +  L+
Sbjct: 5   KLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQN-------LDQLYIPVSEQHWIGFLS 57

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFT-NISLNV 244
           + +V  SD+G Y C+ ++G     +  + L V
Sbjct: 58  LKSVERSDAGRYWCQVEDGGETEISQPVWLTV 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 64.5 bits (156), Expect = 8e-14
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
            +T  E E+   SC   G PVP + W+ K ++++  +       K +   +  +      
Sbjct: 8   SMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS------ 61

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
              V  SD G Y+   +N  G+     +L +
Sbjct: 62  ---VQASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 64.5 bits (156), Expect = 9e-14
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
                E ++    CR   S  P + W   ++               +Y+ +   +   LT
Sbjct: 10  GTEVGEGQSANFYCRVIASSPPVVTWHKDDRE---------LKQSVKYMKRYNGNDYGLT 60

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
           I  V   D G YT RAKN  G     + LNV +
Sbjct: 61  INRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTR 93

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 64.1 bits (155), Expect = 1e-13
 Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P I       T  +  +     R  G P P+ +W      I          + R Y    
Sbjct: 5   PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKI--------ERSDRIYWYWP 56

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
            +++  L I  VT  DS     +A N AGE  ++  L V
Sbjct: 57  EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 95

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (152), Expect = 6e-13
 Identities = 24/131 (18%), Positives = 41/131 (31%), Gaps = 26/131 (19%)

Query: 135 PKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANIS---- 190
           PK++L+     P+       +       + L    +G P P + W               
Sbjct: 5   PKIHLDCPGRIPD------TIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPA 58

Query: 191 ----------------SGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG 234
                             L    + +  ++T    S  T+      D G+YT   KN  G
Sbjct: 59  PDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVG 118

Query: 235 EVFTNISLNVI 245
           E   N+++ VI
Sbjct: 119 EDQVNLTVKVI 129

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 61.8 bits (149), Expect = 8e-13
 Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 146 PNIRPI----TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQY 201
           P+++P       D+   E       C+  G P P++ W   +  +          ++   
Sbjct: 5   PHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPV--------KESRHFQ 56

Query: 202 IIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           I        +LTI  V   D   YTC+A N  GE      L V
Sbjct: 57  IDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 1e-12
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 3/100 (3%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P ++ +       E E   L C++   P       +K     + +    N ++ ++ + +
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALM--NGSESRFFVSS 60

Query: 206 INSLSNLTIVAVTMSD-SGIYTCRAKNGAGEVFTNISLNV 244
               S L I  + M    G Y C   +  G     I+L V
Sbjct: 61  SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 60.3 bits (145), Expect = 2e-12
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 13/91 (14%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           D  A+   ++  SC A+G P P ++W+              +        +   S   L 
Sbjct: 10  DTEADIGSDLRWSCVASGKPRPAVRWLR-------------DGQPLASQNRIEVSGGELR 56

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
              + + DSG+Y C A+N  G V+ +  L V
Sbjct: 57  FSKLVLEDSGMYQCVAENKHGTVYASAELTV 87

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 3e-12
 Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 154 DVTAEENENVTLSCRATGSPV---PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
           D       ++T S R  G+ +   P +KW   + +  +   G        Y   +   L 
Sbjct: 13  DGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLF 72

Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
            L I     + +G Y C          +N +L V
Sbjct: 73  ELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.5 bits (140), Expect = 2e-11
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 2/108 (1%)

Query: 146 PNIRPITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
           P+   I+   +        L+C    GSP  +  W      +   +              
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLT-ADAKKTRAFMNSSFT 61

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVA 252
                 +L    VT  DSG Y C+A+NG G    + + ++  VE  V 
Sbjct: 62  IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNVG 109

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 56.8 bits (136), Expect = 4e-11
 Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 8/98 (8%)

Query: 149 RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS 208
           + ++ D+ A+  +   + C    +P+    +    K +           + +       S
Sbjct: 7   QYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDV-------NGNPEDRITRHNRTS 59

Query: 209 LSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNVI 245
              L        D G+YTC   NG G+   + + L V+
Sbjct: 60  GKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 97

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 5e-11
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 156 TAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIV 215
           TA E  +  +     G P P ++W+F   ++   S         +           L + 
Sbjct: 11  TAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSF--IFTEFLEPAANETVRHGCLRLN 68

Query: 216 AVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
             T  ++G YT  A N  G+   +I    +
Sbjct: 69  QPTHVNNGNYTLLAANPFGQASASIMAAFM 98

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 7e-11
 Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 7/95 (7%)

Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
           +P+   I  +V     +  T  C A G  V   +   +   + +         K   +  
Sbjct: 2   TPHFLRIQ-NVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDA------PLKEIKVTS 54

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN 239
           +   +++  +V  T  D+G Y C  +   G   +N
Sbjct: 55  SRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISN 89

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 8e-11
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 4/95 (4%)

Query: 152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISS-GLANMNKRQYIIKTINSLS 210
           +  +      NVT     +  P+ ++ W  ++  +A + +      +  +  +       
Sbjct: 2   SQQIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60

Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
           +LTI  +T SD   Y   + N    +     L V+
Sbjct: 61  SLTIYNLTSSDEDEYEMESPNITDTM--KFFLYVL 93

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 9e-11
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 1/101 (0%)

Query: 145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
           S  +    P+V   EN  V LSC  +G   P+++W F +     +     N     Y  +
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCY-NNKITASYEDR 62

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
                + +T  +VT  D+G YTC      G  +  + + +I
Sbjct: 63  VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.7 bits (133), Expect = 9e-11
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
               +E E+  + C    S  P I W  K +          ++  ++ +   + S + L 
Sbjct: 10  PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGR----------DVILKKDVRFIVLSNNYLQ 59

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
           I  +  +D G Y C  +  A        + VI
Sbjct: 60  IRGIKKTDEGTYRCEGRILARGEINFKDIQVI 91

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 1e-10
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 3/104 (2%)

Query: 146 PNIRPITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
           P+   +    +A       L+C    GSP  +  W     +    ++  +          
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIV--MPTNPKSTRAFSNSSYV 60

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE 248
              +   L    ++ SD+G Y+C A+NG G   T+ ++ +  VE
Sbjct: 61  LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 104

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 1e-10
 Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 3/94 (3%)

Query: 154 DVTAEENENVTLSCRATGSPV---PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
             T +  E++T   +     +   P IKW   + +     +G     K  +   +     
Sbjct: 9   GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTF 68

Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
            + I+    + +G Y C           +  L V
Sbjct: 69  EMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEV 102

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (130), Expect = 3e-10
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 1/100 (1%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
            ++     DV   ENE++ L+C  +G   P+++W F +     +     +     Y  + 
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCY-NSQITAPYADRV 60

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
             S S +T  +VT  D+G YTC      G+ +  +S+++ 
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 8e-10
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 39  CECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLVELDLS 95
           CE         V C  +N T +P  L   T +L LS+N L      T      L +L+L 
Sbjct: 4   CEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 96  YNQIQFVPSH 105
             ++  +   
Sbjct: 64  RAELTKLQVD 73

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 8e-04
 Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 78  LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ 124
           L       L NL  L L  N +  +P     S L L    L GNP  
Sbjct: 163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 8e-04
 Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 3/56 (5%)

Query: 82  TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKL 137
              K+ + +E++     +  +P  +         L LS N +   +    +   +L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRL 57

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.8 bits (123), Expect = 2e-09
 Identities = 22/90 (24%), Positives = 29/90 (32%), Gaps = 11/90 (12%)

Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTI 214
                 E VTL+CRA  +P    +W      +         M            L  +  
Sbjct: 17  PEGSAEEKVTLTCRARANPPATYRWKMNGTEL--------KMGPDSRYRLVAGDL--VIS 66

Query: 215 VAVTMSDSGIYTCRAKNGAGEVFT-NISLN 243
             V   D+G Y C A N  G V +   SL 
Sbjct: 67  NPVKAKDAGSYQCVATNARGTVVSREASLR 96

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 4e-09
 Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 4/101 (3%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIAN---ISSGLANMNKRQYIIK 204
           + P    +  +    + L C  TG       W +   +I     +        +     +
Sbjct: 5   VSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKR 64

Query: 205 TINSLSNLTIVAVTMSDSGI-YTCRAKNGAGEVFTNISLNV 244
               ++ L I  +        +TC AKN  G     I L  
Sbjct: 65  RSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 4e-09
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
           IT   +   + +  +     G+P P ++W +   I+         +  + ++        
Sbjct: 7   ITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESK----YICTKIHVTNHTEYHG 62

Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
            L +   T  ++G YT  AKN  G+    IS + +
Sbjct: 63  CLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFM 97

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.0 bits (123), Expect = 4e-09
 Identities = 20/111 (18%), Positives = 33/111 (29%), Gaps = 15/111 (13%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKI------------IANISSGLAN 195
           I P  P + A   +   L CR +         +   +                 +     
Sbjct: 6   IGPGHP-IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPE 64

Query: 196 MNKRQYIIKTINSLSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
              R  ++K         L I  V  SD G YTC  ++ + +    + L V
Sbjct: 65  YRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV 115

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 1e-08
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 6/97 (6%)

Query: 154 DVTAEENENVTLSCRATGSPV-PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
           + +    +   L C        P + W                  +  +  +   S   L
Sbjct: 12  EHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKL----EDRQTSWKEEKNISFFIL 67

Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNVIKVE 248
               V  +D+G Y C A   +  + ++  +L V  V+
Sbjct: 68  HFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDVK 104

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.3 bits (117), Expect = 2e-08
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 2/94 (2%)

Query: 152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQY-IIKTINSLS 210
           +  V       + L+          I  +  E+    ++     M          I +  
Sbjct: 2   SGTVWGALGHGINLNI-PNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG 60

Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           +L I  +T  DSG Y     +  G    N +L++
Sbjct: 61  DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDL 94

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.8 bits (115), Expect = 3e-08
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 9/99 (9%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P I   +  +  +      L     G+P P   W   +                + ++  
Sbjct: 3   PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSG---------AALAPELLVDA 53

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
            +S +++   +   +DSG Y  + KN  GE      + V
Sbjct: 54  KSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 48.9 bits (115), Expect = 3e-08
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 9/95 (9%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P ++    +V   EN    L C   G+         K+           + N +++    
Sbjct: 3   PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDG---------KSYNWQEHNAAL 53

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
                +L  +    SD G Y C A+  AG   + +
Sbjct: 54  RKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRV 88

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 3e-08
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 8/90 (8%)

Query: 155 VTAEENENVTLSCRATGSPVPKIKW------IFKEKIIANISSGLANMNKRQYIIKTINS 208
           V  ++ + V L+C A+     +  W             + ++ G + +N R    +++  
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63

Query: 209 LSN--LTIVAVTMSDSGIYTCRAKNGAGEV 236
             N  L I  + + DS  Y C  ++   EV
Sbjct: 64  QGNFPLIIKNLKIEDSDTYICEVEDQKEEV 93

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 4e-08
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 155 VTAEENENVTLSCRATGSPVP----KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
           VT E  E  TLSC    S       +I W  ++K++  + SG  N+          +  +
Sbjct: 4   VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN 63

Query: 211 N--LTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKV 247
           N  + I+A+  SD G Y C       + F    L  + +
Sbjct: 64  NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTL 102

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 4e-08
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 3/93 (3%)

Query: 153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
               A   E   + C    +P P       ++    + SG +     + I      +S L
Sbjct: 14  QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKEN--VLESGTSGRYTVETISTEEGVISTL 71

Query: 213 TIVAVTMS-DSGIYTCRAKNGAGEVFTNISLNV 244
           TI  +  +    IY C A N  G     I L  
Sbjct: 72  TISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 104

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 4e-08
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 22/92 (23%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           + T  EN   T  C+A G+P+P++K +                                 
Sbjct: 13  NWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP----------------------IGE 50

Query: 214 IVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
            V VT    G Y CRA++  GEV   +++NV+
Sbjct: 51  SVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 82

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 6e-08
 Identities = 9/100 (9%), Positives = 25/100 (25%), Gaps = 11/100 (11%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGS-PVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
             +            + +TL C+  G  P  ++  +                  ++    
Sbjct: 5   ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRG----------EKELKREPAV 54

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
              +    T++         ++CR +         +  N 
Sbjct: 55  GEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENT 94

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 7e-08
 Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 1/72 (1%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDL 94
           CP  C C +   K T  C  +    +P  +   +Q + L  N +             L +
Sbjct: 2   CPGACVC-YNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTI 60

Query: 95  SYNQIQFVPSHI 106
            +     +    
Sbjct: 61  LWLHSNVLARID 72

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 8e-08
 Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 19/123 (15%)

Query: 142 FACSPNIRPITPDVTAEENENVTLSCRATGSPVPK----IKWIFKEKIIANISSGLANMN 197
           FA S +I      +   + E   L C+ T SP  +    I+W+        +   +   +
Sbjct: 1   FARSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYS 60

Query: 198 KRQYIIKTINSLSN---------------LTIVAVTMSDSGIYTCRAKNGAGEVFTNISL 242
             +        L                 + +  + +SD G Y C+ K   G     I L
Sbjct: 61  GDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHL 120

Query: 243 NVI 245
            V+
Sbjct: 121 VVL 123

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 8e-08
 Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
           D TA   E V L C  +      +KW    + I           K +Y I+       L 
Sbjct: 9   DTTAYCGERVELECEVSE-DDANVKWFKNGEEIIP-------GPKSRYRIRVEGKKHILI 60

Query: 214 IVAVTMSDSGIYTCRAKNGAGE 235
           I   T +D+  Y+     G   
Sbjct: 61  IEGATKADAAEYSVMTTGGQSS 82

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 20/140 (14%), Positives = 47/140 (33%), Gaps = 8/140 (5%)

Query: 1   MDHDECADDVMMIYEWRVYIMVLVCTGCLQVFAECPSTCECKWKGGKETVLCKAKNFTTI 60
           +     + + + + +  +  +  +      +                   L  + N    
Sbjct: 219 LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS 278

Query: 61  PEQLDVGTQVLDLSDNFLDRYTFRKLI-NLVELDLSYNQIQFVPSHILDSILELRELKLS 119
              L    + L++S+N L       L   L  L  S+N +  VP    +    L++L + 
Sbjct: 279 LCDLPPSLEELNVSNNKLI--ELPALPPRLERLIASFNHLAEVP----ELPQNLKQLHVE 332

Query: 120 GNPIQKITHEAFINVPKLNL 139
            NP+++   +   +V  L +
Sbjct: 333 YNPLREF-PDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 17/120 (14%), Positives = 36/120 (30%), Gaps = 7/120 (5%)

Query: 1   MDHDECADDVMMIYEWRVYIMVLVCTGCLQVFAECPSTCECKWKGGKETVLCKAKN-FTT 59
           +     +   + + E     +  +      + A                 L  + N    
Sbjct: 239 LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE 298

Query: 60  IPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLS 119
           +P       + L  S N L         NL +L + YN ++  P    D    + +L+++
Sbjct: 299 LPALPP-RLERLIASFNHLAEVP-ELPQNLKQLHVEYNPLREFP----DIPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 81  YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLE 140
                  +L EL++S N++  +P+        L  L  S N + ++  E   N+ +L++E
Sbjct: 278 SLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVP-ELPQNLKQLHVE 332

Query: 141 D 141
            
Sbjct: 333 Y 333

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 42  KWKGGKETVLCKAKN--FTTIPEQLDVGTQVLDLSDNFLDRYTFRKLI-NLVELDLSYNQ 98
           +W+        + +    + + + LD     L+L++  L   +  +L  +L  L  S N 
Sbjct: 12  EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS--SLPELPPHLESLVASCNS 69

Query: 99  IQFVPSHILDSILELRELKLSGNPIQKITH 128
           +  +P         L+ L +  N ++ ++ 
Sbjct: 70  LTELPE----LPQSLKSLLVDNNNLKALSD 95

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 11/107 (10%)

Query: 151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
           +      E      +     G+P P + W+   + +       + +   +Y  +   S  
Sbjct: 8   VVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRE-----SKIIHVEYYQEGEISEG 62

Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAVAQPDPV 257
            L     T  ++G YT  AKN  G     I+ + +K       P PV
Sbjct: 63  CLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE------PFPV 103

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.1 bits (108), Expect = 2e-07
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 15/92 (16%)

Query: 154 DVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNL 212
             +     +VT  C A + SP   + W                ++  +   + ++    L
Sbjct: 11  SQSVRPGADVTFICTAKSKSPAYTLVWTR--------------LHNGKLPSRAMDFNGIL 56

Query: 213 TIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           TI  V  SD+G Y C   N         +L+V
Sbjct: 57  TIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 5e-07
 Identities = 13/89 (14%), Positives = 24/89 (26%), Gaps = 11/89 (12%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P        +T+   ++VTL+C                                 +  + 
Sbjct: 7   PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLR-----------KPAAGSHPSRW 55

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAG 234
                 L + +V + DSG Y+C       
Sbjct: 56  AGMGRRLLLRSVQLHDSGNYSCYRAGRPA 84

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 5e-07
 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 9/84 (10%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
            + + P     +   + L+         ++KW+   + I         M+  +YI ++I 
Sbjct: 9   QKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEI--------QMSGSKYIFESIG 59

Query: 208 SLSNLTIVAVTMSDSGIYTCRAKN 231
           +   LTI   +++D   Y C    
Sbjct: 60  AKRTLTISQCSLADDAAYQCVVGG 83

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 5e-07
 Identities = 16/99 (16%), Positives = 27/99 (27%), Gaps = 10/99 (10%)

Query: 149 RPITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
           R     + +  NE     C          I W   +                +   +   
Sbjct: 6   REEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDS---------KTPVSTEQASRIHQ 56

Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
               L  V   + DSG Y C  +N +  +   IS   ++
Sbjct: 57  HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVE 95

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.1 bits (110), Expect = 7e-07
 Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 9/126 (7%)

Query: 34  ECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDN----FLDRYTFRKLINL 89
           +CP+ C C+      TV C  +    IP  + + T  L L+DN          F +L +L
Sbjct: 1   DCPAMCHCEGT----TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHL 56

Query: 90  VELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSPNIR 149
           V+L+L  NQ+  +  +  +    ++EL+L  N I++I+++ F+ + +L   +      I 
Sbjct: 57  VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL-YDNQIS 115

Query: 150 PITPDV 155
            + P  
Sbjct: 116 CVMPGS 121

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 1e-06
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 19/95 (20%)

Query: 152 TPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
           TP +  +E E + L C +    P+ K+ +                  +     K   S  
Sbjct: 7   TPHLEFQEGETIVLRCHSWKDKPLVKVTF-----------------FQNGKSKKFSRSDP 49

Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNV 244
           N +I     S SG Y C    G     +  +++ V
Sbjct: 50  NFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITV 84

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 2e-06
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P ++   P+ + +  ++V L C+  G  + +  WI  E   +        +      +  
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 62

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           + S            +    TC A+N  G    ++ +NV
Sbjct: 63  VTS----------DLNRKNVTCWAENDVGRAEVSVQVNV 91

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 15/106 (14%)

Query: 155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQ--------YIIKTI 206
           + A  NE   L C+   S    +  +                  ++        Y+ +T 
Sbjct: 4   IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTS 63

Query: 207 NSLSN--LTIVAVTMSDSGIYTCR--AKNGAGEVF---TNISLNVI 245
               +  L +  + + D G+Y C    K   G +     N  L+V+
Sbjct: 64  FDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVL 109

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 3e-06
 Identities = 18/144 (12%), Positives = 48/144 (33%), Gaps = 5/144 (3%)

Query: 73  LSDNFL-DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAF 131
           L+   +     +   +   ELDL   +I  +  ++  ++ +   +  S N I+K+     
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDGFP- 60

Query: 132 INVPKLNLEDFACSPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANIS- 190
             + +L       +   R       A  +    +    +   +  +  +   K +  +  
Sbjct: 61  -LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 119

Query: 191 SGLANMNKRQYIIKTINSLSNLTI 214
                 NK+ Y +  I  +  + +
Sbjct: 120 LRNPVTNKKHYRLYVIYKVPQVRV 143

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 4e-06
 Identities = 8/96 (8%), Positives = 20/96 (20%), Gaps = 14/96 (14%)

Query: 153 PDVTAEENENVTLSCRATGS---PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL 209
                   ++ T+ CR           +      + +             +       + 
Sbjct: 10  QPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHY-------ETFGKAAPAPQEAT 62

Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAG----EVFTNIS 241
           +     A        ++C A          +F   S
Sbjct: 63  ATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHS 98

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 6e-06
 Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 150 PIT--PDVTAEENENVTLSCRATGSPVPKIKWIFKEK----------IIANISSGLANMN 197
           PI    +V + E  +V+++C    + V +    +  +          I +          
Sbjct: 2   PIFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAG 61

Query: 198 KRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
           +        N    + I  ++  DSG Y C     +  +  ++SL V++
Sbjct: 62  RANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVLE 110

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (98), Expect = 9e-06
 Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 10/105 (9%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIAN-------ISSGLANMNKRQ 200
           I  + P V   E+ NV L        +    W        +        +S +    +  
Sbjct: 4   IEAVPPQVA--EDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAY 61

Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF-TNISLNV 244
              + I S  +L    +TM D G+YT    +         +  +V
Sbjct: 62  SGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV 106

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 9e-06
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 8/79 (10%)

Query: 69  QVLDLSDNFL-DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT 127
             L L  N + D      L  L  L  + N++  V S  L ++  +  L    N I  +T
Sbjct: 310 TYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLT 367

Query: 128 HEAFINVPKL---NLEDFA 143
                N+ ++    L D A
Sbjct: 368 --PLANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 31/131 (23%), Positives = 43/131 (32%), Gaps = 5/131 (3%)

Query: 1   MDHDECADDVMMIYEWRVYIMVLVCTGCLQVFAECPSTCECKWKGGKETVLCKAKNFTT- 59
                              +  L     L + +   S      K      L    N  + 
Sbjct: 152 GLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD 211

Query: 60  -IPEQLDVGTQVLDLSDNFL-DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELK 117
             P  +      L L+ N L D  T   L NL +LDL+ NQI  +    L  + +L ELK
Sbjct: 212 ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK 269

Query: 118 LSGNPIQKITH 128
           L  N I  I+ 
Sbjct: 270 LGANQISNISP 280

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 17/97 (17%)

Query: 153 PDVTAEENENVTLSCRATGSPVPKI---------------KWIFKEKIIANISSGLANMN 197
             VT +E   V + C  +     +                          N +  +    
Sbjct: 9   SSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEET 68

Query: 198 KRQYIIKTINSLSN--LTIVAVTMSDSGIYTCRAKNG 232
           + ++ +       N  L+I    MSD+G Y  R + G
Sbjct: 69  RDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKG 105

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 2e-05
 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 15/100 (15%)

Query: 146 PNIRPITPDVTAEENENVTLSCR-ATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
             + P  P V      +  L+CR A       ++W                ++     ++
Sbjct: 4   LQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRG--------------LDTSLGAVQ 49

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
           +    S LT+   ++S +G   C    G       + L V
Sbjct: 50  SDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 89

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 2e-05
 Identities = 11/88 (12%), Positives = 20/88 (22%), Gaps = 11/88 (12%)

Query: 148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
            +P+   V     E           P    +W  K +                  I    
Sbjct: 5   EKPLY-GVEVFVGETAHFEIEL-SEPDVHGQWKLKGQP---------LTASPDCEIIEDG 53

Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAGE 235
               L +    +  +G  + +A N    
Sbjct: 54  KKHILILHNCQLGMTGEVSFQAANAKSA 81

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 3e-05
 Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 19/104 (18%)

Query: 147 NIRPITPDVTAEENENVTLSC------RATGSPVPKIKWIFKEKIIANISSGLANMNKRQ 200
           N + I          +  L C      +   + +PK++W    K +   +          
Sbjct: 2   NAQAIFKQ-KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDN---------- 50

Query: 201 YIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
             I        L ++ V     G YTC A          I+  +
Sbjct: 51  --IHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI 92

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 3e-05
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 77  FLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN 121
            L    F      V LD+S  +I  +PS+ L+++ +LR       
Sbjct: 191 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 6e-05
 Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 8/75 (10%)

Query: 35  CPS-TCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLV 90
           C    C C  +      LC+    T IP  L      L      L    +  F    +L 
Sbjct: 1   CHHRICHCSNR----VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLE 56

Query: 91  ELDLSYNQIQFVPSH 105
           ++++S N +  V   
Sbjct: 57  KIEISQNDVLEVIEA 71

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 5e-05
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTI 206
            P +T    E +T+SC+A+ S   ++ W  ++     K++   +S LA+    ++     
Sbjct: 7   PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGS 66

Query: 207 NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
            +   LTI  V   D+ IY C+        F
Sbjct: 67  GTDFTLTIDPVEADDTAIYFCQQSWNGPLTF 97

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.9 bits (92), Expect = 7e-05
 Identities = 17/113 (15%), Positives = 27/113 (23%), Gaps = 17/113 (15%)

Query: 153 PDVTAEENENVTLSCRATGSP------------VPKIKWIFKEKIIANISSGLANMNKRQ 200
            +V       VTL C    S              P+                  +     
Sbjct: 7   REVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTF 66

Query: 201 YIIKTI-----NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVE 248
                          ++ I  +  SD+G +TC  KN    V     + +   E
Sbjct: 67  KERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFE 119

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 39.7 bits (91), Expect = 8e-05
 Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 3/98 (3%)

Query: 150 PITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS 208
             T + T  E     L C      P P I W  +       +       +          
Sbjct: 7   AKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLY 66

Query: 209 LSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIK 246
            + +T     +SD   Y C AKN A +    +    IK
Sbjct: 67  FTIVT--KEDVSDIYKYVCTAKNAAVDEEVVLVEYEIK 102

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 1e-04
 Identities = 21/164 (12%), Positives = 45/164 (27%), Gaps = 28/164 (17%)

Query: 1   MDHDECADDVMMIYEWRVYIMVLVCTGCLQVFAECPSTCECKWKGGKETVLCKAKNFTTI 60
                             +   ++      +  +       +  G +E      +  + +
Sbjct: 313 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQIS-NNRLEDAGVRELCQGLGQPGSVL 371

Query: 61  PEQLDVGTQVLDLSDNFLDR-------YTFRKLINLVELDLSYNQI-----QFVPSHILD 108
                   +VL L+D  +          T     +L ELDLS N +       +   +  
Sbjct: 372 --------RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 109 SILELRELKLSGNPIQKITHEAFINVPKLNLEDFACSPNIRPIT 152
               L +L L      +   +    + K         P++R I+
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDK-------PSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 3e-04
 Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 8/78 (10%)

Query: 69  QVLDLSDNFLDRYTFRKLI----NLVELDLSYNQIQFVPSHILDSILE----LRELKLSG 120
           Q LD+    L    + +L+        + L    +       + S L     L EL L  
Sbjct: 5   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64

Query: 121 NPIQKITHEAFINVPKLN 138
           N +  +     +   +  
Sbjct: 65  NELGDVGVHCVLQGLQTP 82

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.002
 Identities = 5/53 (9%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 87  INLVELDLSYNQIQFVP-SHILDSILELRELKLSGNPIQKITHEAFINVPKLN 138
           +++  LD+   ++     + +L  + + + ++L    + +   +   +  ++N
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN 54

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.003
 Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 12/91 (13%)

Query: 69  QVLDLSDNFLDR-------YTFRKLINLVELDLSYNQIQFVPSHILDSILE-----LREL 116
           QV+ L D  L            R    L EL+L  N++  V  H +   L+     +++L
Sbjct: 30  QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL 89

Query: 117 KLSGNPIQKITHEAFINVPKLNLEDFACSPN 147
            L    +         +  +          +
Sbjct: 90  SLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 15/114 (13%)

Query: 139 LEDFACSPNIRPITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMN 197
           L++F+           V   E   V  +C      P    +W+  E           N  
Sbjct: 3   LQEFSAEE-----RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEF---------PNFI 48

Query: 198 KRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVIKVETAV 251
                     +  NL I     SD G Y+C A +    +  ++     ++  A 
Sbjct: 49  PADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAA 102

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 1e-04
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 19/96 (19%)

Query: 152 TPDVTAEENENVTLSCRATG-SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
                  E + + L C       V K+ +    + +                 K      
Sbjct: 7   ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEAL-----------------KYWYENH 49

Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNVI 245
           N++I   T+ DSG Y C  K    +  +  +++ VI
Sbjct: 50  NISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI 85

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 1e-04
 Identities = 22/127 (17%), Positives = 39/127 (30%), Gaps = 13/127 (10%)

Query: 35  CPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVL--DLSDN----FLDRYTFRKLIN 88
           CP  C      G   + C           L     +    + +      L+    R L  
Sbjct: 1   CPDACCPH---GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGE 57

Query: 89  LVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLED----FAC 144
           L  L +  + ++FV          L  L LS N ++ ++ +    +    L        C
Sbjct: 58  LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117

Query: 145 SPNIRPI 151
           S  +R +
Sbjct: 118 SCALRWL 124

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 2e-04
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 14/96 (14%)

Query: 151 ITP--DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINS 208
            TP     A+  ++V+L+C  TG   P   W  +              +     +    +
Sbjct: 5   TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQ------------IDSPLNGKVTNEGT 52

Query: 209 LSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNV 244
            S LT+  V+  +   Y C A   + ++   I + +
Sbjct: 53  TSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEI 88

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 69  QVLDLSDNFLDRYT-FRKLINLVELDLSYNQIQFVPSHI 106
           +VL L+   L       +L+ +  LDLS+N+++ +P  +
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPAL 39

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.9 bits (87), Expect = 3e-04
 Identities = 9/102 (8%), Positives = 25/102 (24%), Gaps = 14/102 (13%)

Query: 153 PDVTAEENENVTLSCRATGSPV------------PKIKWIFKEKIIANISSGLANMNKRQ 200
            +V       + + C  +                       +  I +     +    + +
Sbjct: 8   KNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGR 67

Query: 201 YIIKTINSLSN--LTIVAVTMSDSGIYTCRAKNGAGEVFTNI 240
             +          L +  +   DSG Y  R +      + ++
Sbjct: 68  AELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISDSNRWLDV 109

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 77  FLDRYTFRKLINLVELDLSYNQI-----QFVPSHILDSILELRELKLSGNPI 123
            +D ++  + I L  L L YN+I     + + + I + + +L  L+L+GN  
Sbjct: 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

 Score = 37.3 bits (86), Expect = 4e-04
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 12/93 (12%)

Query: 155 VTAEENENVTLSCRATGS----------PVPKIKWIFKEKIIANISSGLANMNKRQYIIK 204
             A   E VTLSC+ T +              ++ I     + N   G  ++       +
Sbjct: 11  KVAVTGEKVTLSCQQTNNHNNMYWYRQDTGHGLRLIHYSYGVGNTEKG--DIPDGYEASR 68

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
                 +L + + T S + +Y C +  G    F
Sbjct: 69  PSQEQFSLILESATPSQTSVYFCASGGGGTLYF 101

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 16/109 (14%)

Query: 145 SPNIRPITPDVTAEENENVTLSCRATGS--------------PVPKIKWIFKEKIIANIS 190
           +P +R     + AE  + V L C   GS               +P+  ++       N  
Sbjct: 1   APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKI 60

Query: 191 SGLANMNKRQYII--KTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
           +    +N  +     +  N+   LT+   +  + G Y C   + +   F
Sbjct: 61  TWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYF 109

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (84), Expect = 4e-04
 Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 7/96 (7%)

Query: 151 ITP-DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSL 209
           I P        E+    C+  G    K    F                +R  ++   +  
Sbjct: 5   IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS-----PNQQRISVVWNDDDS 59

Query: 210 SNLTIVAVTMSDSGIYTCRAKNGAGEVFT-NISLNV 244
           S LTI    + D+GIY C      G      +++ +
Sbjct: 60  STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 95

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 5e-04
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 14/98 (14%)

Query: 69  QVLDLSDNFLD-----RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI 123
             L+LS+N L          +K  NL  L+LS N+++          L+L EL L GN +
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 124 QKITHEAFINVPKLNLEDFACSPNI-----RPITPDVT 156
                +    +  +        P +       + P + 
Sbjct: 128 SDTFRDQSTYISAI----RERFPKLLRLDGHELPPPIA 161

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

 Score = 36.7 bits (84), Expect = 7e-04
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 7/86 (8%)

Query: 153 PDVTAEENENVTLSCRATGSPVPK--IKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
             VT E  E++T++C    +        W  K+    N  S        +Y+    +   
Sbjct: 7   RSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEES---ISKGGRYVETVNSGSK 63

Query: 211 NL--TIVAVTMSDSGIYTCRAKNGAG 234
           +    I  +T+ D G Y C      G
Sbjct: 64  SFSLRINDLTVEDGGTYRCGLGVAGG 89

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (82), Expect = 7e-04
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
           P ++    + T +E ++VTL+C +                            +    +  
Sbjct: 6   PFLQV--TNTTVKELDSVTLTCLSNDIGANIQWLFNS------------QSLQLTERMTL 51

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTN-ISLNVI 245
             + S L I  +   D+G Y C   N      +N I L++I
Sbjct: 52  SQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII 92

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 7e-04
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 152 TPDVTAEENENVTLSCRATGSPVPKIKWI-----FKEKIIANISSGLANMNKRQYIIKTI 206
            P V+    +   ++C A   P     W          ++    +   +   +++   T 
Sbjct: 5   PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTS 64

Query: 207 NSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF 237
            +   LTI  V   D   Y C+A + +  +F
Sbjct: 65  GTTVTLTISGVQAEDEADYYCQAWDNSASIF 95

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

 Score = 36.3 bits (83), Expect = 9e-04
 Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 5/87 (5%)

Query: 153 PDVTAEENENVTLSCRATGSP-----VPKIKWIFKEKIIANISSGLANMNKRQYIIKTIN 207
             ++  E  +  L C  T +        +        +    S    N   +        
Sbjct: 9   SALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERA 68

Query: 208 SLSNLTIVAVTMSDSGIYTCRAKNGAG 234
             S L I    + DSG Y C A+  +G
Sbjct: 69  RYSTLHIRDAQLEDSGTYFCAAEASSG 95

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 11/95 (11%), Positives = 24/95 (25%), Gaps = 19/95 (20%)

Query: 151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLS 210
              D    + +++TL+  +     P ++              L+          T     
Sbjct: 5   ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGT----- 59

Query: 211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI 245
                         +TC       +V   I + V+
Sbjct: 60  --------------WTCTVLQNQKKVEFKIDIVVL 80

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 7/94 (7%)

Query: 152 TPDVTAEENENVTLSCRATGSPVP-------KIKWIFKEKIIANISSGLANMNKRQYIIK 204
            P  +    + VT+SC  + + +        +       K++   +  L +    ++   
Sbjct: 7   PPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSAS 66

Query: 205 TINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT 238
              + ++L I  +   D   Y C A N + +   
Sbjct: 67  KSGTSASLAISGLESEDEADYYCAAWNDSLDEPG 100

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 18/89 (20%)

Query: 146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT 205
             +       +  E ++VTL C+   SP       F                        
Sbjct: 6   AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFH------------------NESLI 47

Query: 206 INSLSNLTIVAVTMSDSGIYTCRAKNGAG 234
            +  S+  I A T++DSG Y C+      
Sbjct: 48  SSQASSYFIDAATVNDSGEYRCQTNLSTL 76

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 15/120 (12%), Positives = 31/120 (25%), Gaps = 2/120 (1%)

Query: 1   MDHDECADDVMMIYEWRVYIMVLVCTGCLQVFAECPSTCECKWKGGKETVLCKAKNFTTI 60
           +      ++ +        +  L             +      +     +        T+
Sbjct: 92  LGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITV 151

Query: 61  PEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG 120
             +L     +    +   D      L  L  L LS N I  + +  L  +  L  L+L  
Sbjct: 152 LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFS 209

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 14/98 (14%)

Query: 154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLT 213
               +      L C    +                       + K +     +    NL 
Sbjct: 6   QHFFKHGGTAELKCSQKSNLARVFWKFQN------------GVLKAESPKYGLMGRKNLL 53

Query: 214 IVAVTMSDSGIYTCRAKNGAG--EVFTNISLNVIKVET 249
           I  ++  DSG+Y C ++       VF  ++ +V++V+ 
Sbjct: 54  IFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKV 91

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 3/93 (3%)

Query: 59  TIPEQLDVGTQVLDLSDNFLDRYTFR--KLINLVELDLSYNQIQFV-PSHILDSILELRE 115
                L  G        +F+D+          +  +DLS + I+      IL    +L+ 
Sbjct: 16  VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 75

Query: 116 LKLSGNPIQKITHEAFINVPKLNLEDFACSPNI 148
           L L G  +             L   + +     
Sbjct: 76  LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 108

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 15/116 (12%), Positives = 33/116 (28%), Gaps = 6/116 (5%)

Query: 11  MMIYEWRVYIMVLVCTGCLQVFAECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQV 70
            +   +    +  V      +  +            K  +   +  F      L      
Sbjct: 189 KIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNG 248

Query: 71  LDLSDNFLDRY---TFRKLINLVELDLSYNQIQ-FVPSHILDSILELRELKLSGNP 122
           LDL +N +         +L  L  L++S+N +   +P     ++        + N 
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNK 302

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 5/99 (5%)

Query: 145 SPNIRPITPDVTAEENENVTLSCRATGS--PVPKIKWIFKEKIIANISSGLANMNKRQYI 202
           SP +    P          TL C  T     V  + W         +++G+      +  
Sbjct: 5   SPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGT---PVTAGMETTQPSKQS 61

Query: 203 IKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNIS 241
                + S LT+ A        Y+C+  +        +S
Sbjct: 62  NNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTLS 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	369
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.83
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.72
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.63
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.63
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.62
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.62
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.61
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.59
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.59
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.55
d2avga1	110	Cardiac myosin binding protein C, different domain	99.55
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.54
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.54
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.53
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.53
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.52
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.51
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.51
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.5
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.5
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.5
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.5
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.49
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.48
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.48
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.48
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.47
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.45
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.45
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.45
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.45
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.45
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.41
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.4
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.39
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.36
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.36
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.35
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.34
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.34
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.34
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.33
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.33
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.32
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.32
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.29
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.29
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.29
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.28
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.27
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.27
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.25
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.25
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.23
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.23
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.19
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.19
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.15
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.15
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.15
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.14
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.11
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.11
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.07
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.06
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.01
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.99
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.97
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.97
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.95
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.89
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.85
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.83
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.8
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.79
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.78
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.78
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.78
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.77
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.77
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.76
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.74
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.73
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.73
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.7
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.68
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.68
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.67
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.67
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.63
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.62
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.62
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.61
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.6
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.59
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.58
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.58
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.57
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.57
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.57
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.56
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.54
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.54
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.53
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.51
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.5
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.5
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.5
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.49
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.49
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.49
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.49
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.48
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.47
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.47
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.47
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.47
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.46
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.46
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.46
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.45
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.44
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.44
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.43
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.41
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.4
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.4
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.4
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.39
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.37
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.37
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.37
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.36
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.35
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.35
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.33
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.31
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.31
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.29
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.29
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.28
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.27
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.27
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.25
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.25
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.24
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.21
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.21
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.2
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.2
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.18
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.17
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.15
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.14
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.12
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.12
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.12
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.1
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.07
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.06
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.05
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.05
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.03
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.0
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.99
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.99
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.99
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.99
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.99
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.95
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.92
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.92
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.9
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.88
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.87
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.76
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.68
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.63
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.62
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.62
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.62
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.6
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.59
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.59
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.57
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.56
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.56
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.54
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.54
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.53
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.51
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.5
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.49
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.49
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.47
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.46
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.46
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.45
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.44
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.43
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.42
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.42
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.42
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.42
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.42
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.41
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.41
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.41
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.41
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.4
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.39
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.39
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.39
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.37
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.37
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.37
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.37
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.35
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.35
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.32
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.31
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.31
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.3
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.29
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.29
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.29
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.28
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.28
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.27
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.23
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.22
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.21
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.2
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.19
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.19
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.15
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.14
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.12
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.07
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.06
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.01
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.01
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	96.96
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.95
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	96.88
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	96.78
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	96.57
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	96.57
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	96.49
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	96.43
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	96.41
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.4
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.39
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	96.39
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	96.37
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	96.35
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	96.34
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	96.27
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	96.26
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	96.26
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	96.17
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	96.1
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	96.1
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	95.91
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	95.9
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.79
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	95.77
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	95.72
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	95.63
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	95.59
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	95.57
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	95.55
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	95.42
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	95.41
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	95.41
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	95.31
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	95.22
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	95.17
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	95.16
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	94.83
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	94.82
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	94.82
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	94.76
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	94.73
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	94.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	94.51
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	94.49
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.46
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	94.38
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	94.28
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.25
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	94.19
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	94.09
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	93.66
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	93.61
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	93.53
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	93.16
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	93.14
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	93.08
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	92.99
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	92.4
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	92.03
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	91.66
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	89.95
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	84.78

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.83  E-value=6.7e-21  Score=156.72  Aligned_cols=106  Identities=29%  Similarity=0.548  Sum_probs=96.3

Q ss_pred             CCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC----hhhccCCcccCeeeccCCcccccCCccccc
Q psy12695         34 ECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD----RYTFRKLINLVELDLSYNQIQFVPSHILDS  109 (369)
Q Consensus        34 ~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~----~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~  109 (369)
                      .||..|.|.+    ++|+|++++|++||.++|.++++|+|++|+|.    ...|.++++|+.|+|++|+|..+++++|..
T Consensus         1 ~CP~~C~C~~----~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~   76 (192)
T d1w8aa_           1 DCPAMCHCEG----TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG   76 (192)
T ss_dssp             CCCTTSEEET----TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred             CcCCCCEEcC----CEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccc
Confidence            5999999984    58999999999999999999999999999974    578999999999999999999999999999


Q ss_pred             ccccccccccccceecccCCcccccCcCcccccc
Q psy12695        110 ILELRELKLSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       110 l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      +++|+.|+|++|+|+.+++++|.++++|...++.
T Consensus        77 ~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~  110 (192)
T d1w8aa_          77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY  110 (192)
T ss_dssp             CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECC
T ss_pred             ccccceeeeccccccccCHHHHhCCCcccccccC
Confidence            9999999999999999999999999987665544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.8e-18  Score=133.66  Aligned_cols=98  Identities=18%  Similarity=0.280  Sum_probs=89.1

Q ss_pred             CCCCCeecccCCceEEEecCCCCCccCCCCC--CCccEEEeecce----eChhhccCCcccCeeeccCCcccccCCcccc
Q psy12695         35 CPSTCECKWKGGKETVLCKAKNFTTIPEQLD--VGTQVLDLSDNF----LDRYTFRKLINLVELDLSYNQIQFVPSHILD  108 (369)
Q Consensus        35 cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~--~~~~~L~l~~n~----i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~  108 (369)
                      ||..|.|...   ..++|+++++..+|..+|  .+++.|+|++|+    |...+|.++++|+.|+|++|+|+.|++++|.
T Consensus         1 CP~~C~c~~~---~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~   77 (156)
T d2ifga3           1 CPDACCPHGS---SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH   77 (156)
T ss_dssp             CCSSSCCSSS---SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG
T ss_pred             CcCCCCcCCC---CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccc
Confidence            9999999854   459999999999999887  579999998765    5688999999999999999999999999999


Q ss_pred             cccccccccccccceecccCCcccccC
Q psy12695        109 SILELRELKLSGNPIQKITHEAFINVP  135 (369)
Q Consensus       109 ~l~~L~~L~L~~N~l~~~~~~~f~~l~  135 (369)
                      ++++|+.|+|++|+|+.++.+.|..++
T Consensus        78 ~l~~L~~L~Ls~N~l~~l~~~~~~~~~  104 (156)
T d2ifga3          78 FTPRLSRLNLSFNALESLSWKTVQGLS  104 (156)
T ss_dssp             SCSCCCEEECCSSCCSCCCSTTTCSCC
T ss_pred             ccccccceeccCCCCcccChhhhcccc
Confidence            999999999999999999999997653

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.2e-15  Score=110.92  Aligned_cols=95  Identities=24%  Similarity=0.327  Sum_probs=80.5

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+...         .++.+........|.|.+++.+|+|.|
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~---------~~~~~~~~~~~~~L~I~~~~~~D~G~Y   71 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES---------EHMKVENSENGSKLTILAARQEHCGCY   71 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCS---------SSEEEEECSSEEEEEETTCCTTTCEEE
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccC---------CcEEEEEecceeEEEEeeCCcccCEEE
Confidence            56677788999999999999999999999999999999876532         233344445567899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEeecCC
Q psy12695        226 TCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      +|.|.|..|..+..+.|.|...|.
T Consensus        72 ~C~a~N~~G~~~~~~~l~V~~~P~   95 (101)
T d2cqva1          72 TLLVENKLGSRQAQVNLTVVDKPD   95 (101)
T ss_dssp             EEEEECSSCEEECCEEEEEECSCS
T ss_pred             EEEEEECCCEEEEEEEEEEEecCC
Confidence            999999999999999999987663

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.63  E-value=2.3e-16  Score=138.92  Aligned_cols=103  Identities=26%  Similarity=0.477  Sum_probs=93.7

Q ss_pred             CCCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccc
Q psy12695         33 AECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDS  109 (369)
Q Consensus        33 ~~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~  109 (369)
                      ..||..|.|.    .+.|+|++++|+++|.++|.++++|+|++|+|+   +.+|.++++|+.|++++|.+..+++++|..
T Consensus         2 ~~~p~~c~c~----~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~   77 (305)
T d1xkua_           2 PVCPFRCQCH----LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP   77 (305)
T ss_dssp             CCCCTTCEEE----TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred             CCCCCCCEec----CCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhC
Confidence            4799999997    457999999999999999999999999999965   678999999999999999999999999999


Q ss_pred             ccccccccccccceecccCCcccccCcCcc
Q psy12695        110 ILELRELKLSGNPIQKITHEAFINVPKLNL  139 (369)
Q Consensus       110 l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~  139 (369)
                      +++|+.|+|++|+|+.++...+..+..|..
T Consensus        78 l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~  107 (305)
T d1xkua_          78 LVKLERLYLSKNQLKELPEKMPKTLQELRV  107 (305)
T ss_dssp             CTTCCEEECCSSCCSBCCSSCCTTCCEEEC
T ss_pred             CCccCEecccCCccCcCccchhhhhhhhhc
Confidence            999999999999999999887776665543

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.63  E-value=4e-16  Score=112.68  Aligned_cols=94  Identities=26%  Similarity=0.341  Sum_probs=78.1

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+.++.+.+|+.+.|.|.+.|.|.|.|.|++++..+.....         +.+........|.|.+++.+|+|.|
T Consensus         2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~---------~~~~~~~~~~~L~I~~~~~~D~G~Y   72 (97)
T d1koaa1           2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVK---------YMKRYNGNDYGLTINRVKGDDKGEY   72 (97)
T ss_dssp             CEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTT---------BBCCCSTTEEEEEESCCCSGGGSCE
T ss_pred             CEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeE---------EEEEecCCeeEEEeCCCceecCEEE
Confidence            6677778899999999999999999999999999999988754221         1122233456799999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEeecC
Q psy12695        226 TCRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      .|.|.|..|..+..+.|.|...+
T Consensus        73 ~C~a~N~~G~~~~~~~l~V~~~~   95 (97)
T d1koaa1          73 TVRAKNSYGTKEEIVFLNVTRHS   95 (97)
T ss_dssp             EEEEEETTEEEEEEECCEEECSC
T ss_pred             EEEEEECCCEEEEEEEEEEeecC
Confidence            99999999999999999987643

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.62  E-value=9e-16  Score=109.85  Aligned_cols=92  Identities=20%  Similarity=0.286  Sum_probs=77.3

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .|.+...+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+....         ++..........|.|.+++.+|+|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~---------~~~~~~~~~~~~L~I~~~~~~D~G~   72 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAP---------ELLVDAKSSTTSIFFPSAKRADSGN   72 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCST---------TSEEEEETTEEEEECTTBCGGGCEE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeee---------eeeecccccceeeccccccccccEE
Confidence            3677777889999999999999999999999999999987664322         2233444566789999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEe
Q psy12695        225 YTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      |+|.|.|..|..++.+.|.|.
T Consensus        73 Y~c~a~N~~G~~~~~~~l~V~   93 (93)
T d1wiua_          73 YKLKVKNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             EEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEECCCEEEEEEEEEEC
Confidence            999999999999999888773

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.62  E-value=2.2e-15  Score=108.91  Aligned_cols=93  Identities=26%  Similarity=0.291  Sum_probs=77.5

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+....        ..+......+...|.|.++..+|+|.|
T Consensus         5 P~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~--------~~~~~~~~~~~~~L~I~~~~~~D~G~Y   76 (98)
T d1g1ca_           5 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSD--------RIYWYWPEDNVCELVIRDVTGEDSASI   76 (98)
T ss_dssp             EEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCS--------SEEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeee--------eeEEEeccceEEEEEeccCccccCEEE
Confidence            566667788999999999999999999999999999998775321        222333344566899999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEee
Q psy12695        226 TCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      .|.|.|..|..+..+.|.|..
T Consensus        77 ~c~a~N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          77 MVKAINIAGETSSHAFLLVQA   97 (98)
T ss_dssp             EEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEECCcEEEEEEEEEEEE
Confidence            999999999999999998864

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.61  E-value=1e-15  Score=108.38  Aligned_cols=87  Identities=28%  Similarity=0.558  Sum_probs=74.1

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...+.++.+.+|+++.|.|.+.|.|.|.+.|++++..+...         .++.+    ..+.|.|.++..+|+|.|
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~---------~~~~~----~~~~L~i~~v~~~D~G~Y   68 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQ---------NRIEV----SGGELRFSKLVLEDSGMY   68 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCC---------SSEEE----ETTEEEESSCCGGGCEEE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeecccccc---------ceeee----eeeeEEEEeecccCCEEE
Confidence            56677788999999999999999999999999999999876532         12222    245799999999999999


Q ss_pred             EEEEEeCCceEEEEEEEEEe
Q psy12695        226 TCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       226 ~C~a~n~~g~~~~~~~l~v~  245 (369)
                      .|.|.|..|.....+.|.|.
T Consensus        69 ~C~a~N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          69 QCVAENKHGTVYASAELTVQ   88 (89)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEeCCCEEEEEEEEEEE
Confidence            99999999999999998885

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.59  E-value=4.5e-15  Score=108.06  Aligned_cols=93  Identities=25%  Similarity=0.420  Sum_probs=76.9

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEe-ecceeeEEEcccCCCCCE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT-INSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G  223 (369)
                      .|.+...+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+....         ++.+.. ..+...|.|.+++.+|+|
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~---------~~~~~~~~~~~~~L~I~~~~~~D~G   78 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESR---------HFQIDYDEEGNCSLTISEVCGDDDA   78 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSS---------SEEEEECTTCEEEEEESSCCGGGCE
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeecccccee---------eEeEEEecCceeeeEecCCCHHhCE
Confidence            4566667888999999999999999999999999999998875322         222222 234568999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEee
Q psy12695        224 IYTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      .|.|.|.|..|..+..+.|.|..
T Consensus        79 ~Y~C~a~N~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          79 KYTCKAVNSLGEATCTAELLVET  101 (102)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEECCcEEEEEEEEEEEE
Confidence            99999999999999999998863

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.59  E-value=9.1e-16  Score=109.32  Aligned_cols=89  Identities=26%  Similarity=0.469  Sum_probs=74.4

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      |...|.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+....         ++.+......+.|.|.+++.+|+|.|.|
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~---------~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   72 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA---------RHQVTTTKYKSTFEISSVQASDEGNYSV   72 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSS---------SCEEEECSSEEEEECSSCCSCCCEEEEE
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeeccccccc---------ceeeeeecceeEEeecCCCHHHCEEEEE
Confidence            5567889999999999999999999999999999987664321         2233344556789999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEe
Q psy12695        228 RAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       228 ~a~n~~g~~~~~~~l~v~  245 (369)
                      .|.|..|..+..+.|.|.
T Consensus        73 ~a~N~~G~~~~~~~l~V~   90 (91)
T d1tnna_          73 VVENSEGKQEAEFTLTIQ   90 (91)
T ss_dssp             ECBCSSCBCCEEEEEECC
T ss_pred             EEEECCCEEEEEEEEEEE
Confidence            999999998888888774

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.55  E-value=6e-15  Score=104.95  Aligned_cols=85  Identities=32%  Similarity=0.449  Sum_probs=69.5

Q ss_pred             CCccC-CCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        146 PNIRP-ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       146 p~i~~-~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |.+.. .|.++.+.+|+.+.|.|.+.|.|.|.+.|+++++.....               .....+.|.|.+++.+|+|.
T Consensus         5 P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~---------------~~~~~~~L~I~~v~~~D~G~   69 (91)
T d1cs6a3           5 PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK---------------WLSSEPLLHIQNVDFEDEGT   69 (91)
T ss_dssp             EEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC---------------CSBSSSEEEECSCCGGGCEE
T ss_pred             CeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE---------------eeeeeeEEEeCCCCccCCEE
Confidence            44443 467889999999999999999999999999976533210               11235689999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEe
Q psy12695        225 YTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      |+|.|.|..|..+..+.|.|.
T Consensus        70 Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          70 YECEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             EEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEEEEE
Confidence            999999999999999988885

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.1e-14  Score=107.57  Aligned_cols=101  Identities=19%  Similarity=0.186  Sum_probs=72.3

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCCC---CCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGSP---VPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p---~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      .+...|.++++.+|++++|.|.+.|.|   .|.|.|++++.................+........+.|.|.+++.+|+|
T Consensus         6 ~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   85 (110)
T d2avga1           6 LFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTG   85 (110)
T ss_dssp             SEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCE
T ss_pred             EeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCc
Confidence            355567889999999999999999998   57899999774332211111000000000001112457999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEeec
Q psy12695        224 IYTCRAKNGAGEVFTNISLNVIKV  247 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v~~~  247 (369)
                      .|.|.|.|..|..++.+.|.|...
T Consensus        86 ~Y~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          86 GYRCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEESC
T ss_pred             EEEEEEEECCCeEEEEEEEEEEec
Confidence            999999999999999999999753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.3e-15  Score=127.95  Aligned_cols=104  Identities=26%  Similarity=0.364  Sum_probs=91.3

Q ss_pred             CCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccccCCccccccccc
Q psy12695         37 STCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILEL  113 (369)
Q Consensus        37 ~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L  113 (369)
                      +.|.|+..++...|+|++++|++||.++|.++++|+|++|+|.   +.+|.++++|++|+|++|+|+.++.  |..+++|
T Consensus         2 ~~C~~~~~~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L   79 (266)
T d1p9ag_           2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL   79 (266)
T ss_dssp             CSSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred             CccEEcccCCCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--ccccccc
Confidence            4699998777788999999999999999999999999999965   6789999999999999999999975  5679999


Q ss_pred             ccccccccceecccCCcccccCcCcccccc
Q psy12695        114 RELKLSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       114 ~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      +.|+|++|+|+.++. .|.+++.|...++.
T Consensus        80 ~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          80 GTLDLSHNQLQSLPL-LGQTLPALTVLDVS  108 (266)
T ss_dssp             CEEECCSSCCSSCCC-CTTTCTTCCEEECC
T ss_pred             ccccccccccccccc-cccccccccccccc
Confidence            999999999998754 67777777665544

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.6e-14  Score=101.01  Aligned_cols=77  Identities=17%  Similarity=0.273  Sum_probs=66.6

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      .+..+.+|++++|.|.+.|.|.|.+.|++++.....                   ....|.|.++..+|+|.|.|.|.|.
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~-------------------~~~~l~i~~v~~~DsG~Y~C~a~N~   67 (84)
T d2nxyb2           7 SDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ-------------------GGKTLSVSQLELQDSGTWTCTVLQN   67 (84)
T ss_dssp             CSSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEE-------------------ESSEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCeEEECCCeEEEEEEeEcCCchheEEEeeccccee-------------------eeeeeeeeecccccccEEEEEEEeC
Confidence            456789999999999999999999999998765432                   2457999999999999999999999


Q ss_pred             CceEEEEEEEEEeecC
Q psy12695        233 AGEVFTNISLNVIKVE  248 (369)
Q Consensus       233 ~g~~~~~~~l~v~~~~  248 (369)
                      .|.....+.|.|...+
T Consensus        68 ~g~~~~~~~v~V~~~~   83 (84)
T d2nxyb2          68 QKKVEFKIDIVVLAFQ   83 (84)
T ss_dssp             TEEEEEEEEECEECCC
T ss_pred             CCEEEEEEEEEEEecC
Confidence            9999999999887643

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.53  E-value=1.2e-14  Score=102.73  Aligned_cols=85  Identities=27%  Similarity=0.554  Sum_probs=68.7

Q ss_pred             CCccCCCC-CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        146 PNIRPITP-DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       146 p~i~~~~~-~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |.+...+. .+.+.+|+.+.|.|.+.|.|.|.+.|++++..+..          .++.+    ....|.|.+++..|+|.
T Consensus         3 P~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~----------~~~~~----~~~~L~i~~v~~~d~G~   68 (89)
T d1biha4           3 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG----------GRATV----TDSGLVIKGVKNGDKGY   68 (89)
T ss_dssp             EEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCS----------SSEEE----ETTEEEESSCCSTTCEE
T ss_pred             CeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCcc----------ccEEE----eeeeEEECCCChhhCEE
Confidence            44444443 46789999999999999999999999999987642          12222    13469999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEE
Q psy12695        225 YTCRAKNGAGEVFTNISLNV  244 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v  244 (369)
                      |.|.|.|..|.....+.|.|
T Consensus        69 Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          69 YGCRATNEHGDKYFETLVQV   88 (89)
T ss_dssp             EEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEEEE
Confidence            99999999999998888877

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.1e-14  Score=108.05  Aligned_cols=102  Identities=15%  Similarity=0.140  Sum_probs=72.3

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCC---CCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSP---VPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p---~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +...|.++++.+|+.++|.|.+.|.|   .|.|.|++++.................+..........|.|.+++.+|+|.
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            34567889999999999999999998   579999998643221111100000000000011123579999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        225 YTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      |+|.|.|..|..++.+.|.|...+.
T Consensus        83 Y~C~a~N~~G~~~~~~~L~V~~~~~  107 (113)
T d2dava1          83 YRCEVTYKDKFDSCSFDLEVHESTG  107 (113)
T ss_dssp             EEEEEECSSCEEEECCEEEEECCCC
T ss_pred             EEEEEEeCCCEEEEEEEEEEEcCCC
Confidence            9999999999999999999976653

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=7.9e-14  Score=101.17  Aligned_cols=97  Identities=20%  Similarity=0.375  Sum_probs=75.3

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccC-CCCC
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVT-MSDS  222 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~  222 (369)
                      +|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++.+........   .....++.+........|.|.++. .+|+
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~~D~   78 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALM---NGSESRFFVSSSQGRSELHIENLNMEADP   78 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECC---TTGGGTEEEEEETTEEEEEECSCCTTTSS
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecc---cCCCceEEEEeCCCEEEEEEeccccccCC
Confidence            4677777788899999999999999999988 6999986533221110   112234555556667899999998 5799


Q ss_pred             EEEEEEEEeCCceEEEEEEEEE
Q psy12695        223 GIYTCRAKNGAGEVFTNISLNV  244 (369)
Q Consensus       223 G~Y~C~a~n~~g~~~~~~~l~v  244 (369)
                      |.|.|.|.|..|..+..+.|.|
T Consensus        79 G~Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          79 GQYRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEEECCCEEEEEEEEEE
Confidence            9999999999999999998887

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=2.9e-14  Score=103.32  Aligned_cols=86  Identities=34%  Similarity=0.450  Sum_probs=68.9

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      +.++..|+++.|.|.+.|.|.|.+.|++++..+.......     ...  ......+.|.|.+++.+|+|.|.|.|.|..
T Consensus        14 ~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~-----~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   86 (100)
T d1qz1a3          14 NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDD-----EKH--IFSDDSSELTIRNVDKNDEAEYVCIAENKA   86 (100)
T ss_dssp             EEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CC-----SSE--EECTTSCEEEECSCCGGGCEEEEEEEEETT
T ss_pred             eEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccc-----eeE--EeecCceEEEeCCCCcccCEEEEEEEEECC
Confidence            4567889999999999999999999999998765432211     011  122345789999999999999999999999


Q ss_pred             ceEEEEEEEEEee
Q psy12695        234 GEVFTNISLNVIK  246 (369)
Q Consensus       234 g~~~~~~~l~v~~  246 (369)
                      |..+..+.|.|..
T Consensus        87 G~~~~~~~l~V~~   99 (100)
T d1qz1a3          87 GEQDASIHLKVFA   99 (100)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             CEEEEEEEEEEEE
Confidence            9999999998864

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.51  E-value=4.4e-14  Score=104.07  Aligned_cols=101  Identities=26%  Similarity=0.408  Sum_probs=70.1

Q ss_pred             CCCccC-CCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeeccc--cc--ccCCcceEEEEeecceeeEEEcccCC
Q psy12695        145 SPNIRP-ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISS--GL--ANMNKRQYIIKTINSLSNLTIVAVTM  219 (369)
Q Consensus       145 ~p~i~~-~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~L~I~~v~~  219 (369)
                      .|.+.. .|.++++.+|+++.|.|.+.|.|.|.|.|++++........  ..  ................+.|.|.++..
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            355554 37899999999999999999999999999987643211000  00  00000011111122346899999999


Q ss_pred             CCCEEEEEEEEeCCceEEEEEEEEEe
Q psy12695        220 SDSGIYTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      +|+|.|+|.|.|..|...+.+.|.|.
T Consensus        84 ~D~G~Y~C~a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          84 EDAGEYTCLAGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             HHCeEEEEEEEECCCEEEEEEEEEEC
Confidence            99999999999999999999998873

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.8e-14  Score=125.23  Aligned_cols=109  Identities=22%  Similarity=0.331  Sum_probs=90.1

Q ss_pred             CCCCCCeecccCCceEEEecCCCCCccCCCCCCCccEEEeeccee---ChhhccCCcccCeeeccCCccccc--------
Q psy12695         34 ECPSTCECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFV--------  102 (369)
Q Consensus        34 ~cp~~C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i---~~~~f~~l~~L~~L~Ls~N~l~~i--------  102 (369)
                      .||..|.|... ....|.|++.+|++||..+|.+++.|+|++|+|   .+.+|.++++|+.||+++|+|..+        
T Consensus         1 ~cp~~C~C~~~-~~~~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~   79 (284)
T d1ozna_           1 PCPGACVCYNE-PKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL   79 (284)
T ss_dssp             CCCTTCEEECS-SSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CcCCCCEEcCC-CCeEEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccc
Confidence            49999999643 356899999999999999999999999999995   467899999999999988876443        


Q ss_pred             -----------------CCcccccccccccccccccceecccCCcccccCcCcccccc
Q psy12695        103 -----------------PSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       103 -----------------~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                                       ++.+|.++++|+.|+|++|.+..+....|....+|...++.
T Consensus        80 ~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~  137 (284)
T d1ozna_          80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ  137 (284)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             ccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhc
Confidence                             34456777889999999999999888888877776554443

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.50  E-value=2.3e-14  Score=103.16  Aligned_cols=84  Identities=26%  Similarity=0.406  Sum_probs=68.2

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ...+.+|+.+.|.|.+.|.|.|.+.|++++..+.......      .  .......+.|.|.+++.+|+|.|+|.|.|..
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~------~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   85 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG------G--YKVRNQHWSLIMESVVPSDKGNYTCVVENEY   85 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTT------C--CEEEGGGTEEEECSCCGGGCEEEEEEEEETT
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCcee------e--EEEcCCcEEEEECCCCcccCEEEEEEEEECC
Confidence            3567899999999999999999999999998875432111      0  1122345689999999999999999999999


Q ss_pred             ceEEEEEEEEEe
Q psy12695        234 GEVFTNISLNVI  245 (369)
Q Consensus       234 g~~~~~~~l~v~  245 (369)
                      |.....+.|.|.
T Consensus        86 G~~~~~~~l~Vl   97 (97)
T d3dara1          86 GSINHTYHLDVV   97 (97)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             CEEEEEEEEEEC
Confidence            999999988873

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6e-14  Score=106.73  Aligned_cols=95  Identities=22%  Similarity=0.331  Sum_probs=74.1

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccc--------------------cCCcceEEEEeeccee
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLA--------------------NMNKRQYIIKTINSLS  210 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~  210 (369)
                      .+..+++.+|+.++|.|.+.|.|.|.+.|++++..+........                    .....++.+.......
T Consensus        15 ~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   94 (130)
T d1gxea_          15 IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRS   94 (130)
T ss_dssp             CCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEE
T ss_pred             CCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEE
Confidence            45788999999999999999999999999997654432211100                    1112244555556677


Q ss_pred             eEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy12695        211 NLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       211 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      .|.|.++..+|+|.|+|.|.|..|..++.+.|.|.
T Consensus        95 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          95 IFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             EEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             EEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            89999999999999999999999999999999885

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=9.4e-14  Score=98.38  Aligned_cols=81  Identities=21%  Similarity=0.353  Sum_probs=66.8

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++++.......            .......+.|.|.+++.+|+|.|.|.|.|.
T Consensus         9 ~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~------------~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~   76 (90)
T d1vcaa2           9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK------------VTNEGTTSTLTMNPVSFGNEHSYLCTATCE   76 (90)
T ss_dssp             SEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSE------------EEEETTEEEEEESSCCGGGCSEEEEEEEET
T ss_pred             CcEEEECCCEEEEEEeccCCCCceEEEEecCccceeee------------eeeecCCcEEEEecccccccceEEEEEEeC
Confidence            34567899999999999999999999999876543210            112345678999999999999999999999


Q ss_pred             CceEEEEEEEEEe
Q psy12695        233 AGEVFTNISLNVI  245 (369)
Q Consensus       233 ~g~~~~~~~l~v~  245 (369)
                      .|..+..+.|.|.
T Consensus        77 ~g~~~~~~~v~V~   89 (90)
T d1vcaa2          77 SRKLEKGIQVEIY   89 (90)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEE
Confidence            9999999999886

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=5.3e-14  Score=100.10  Aligned_cols=88  Identities=22%  Similarity=0.341  Sum_probs=69.5

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      +...|.++.+.+|+.+.|.|.+.|.|.|.+.|+++++.+......       ++.   ....+.|.|.+++..|+|.|.|
T Consensus         4 F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~-------~~~---~~~~~~L~I~~~~~~D~G~Y~C   73 (92)
T d1epfa2           4 FKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDV-------RFI---VLSNNYLQIRGIKKTDEGTYRC   73 (92)
T ss_dssp             EEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCT-------TEE---ECTTSCEEETTCCGGGCEEEEE
T ss_pred             EEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccce-------eee---eeeeeeEEECCCCHHhCEEEEE
Confidence            445678899999999999999999999999999999876543221       111   1224579999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEe
Q psy12695        228 RAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       228 ~a~n~~g~~~~~~~l~v~  245 (369)
                      .|.|..|.......+.|.
T Consensus        74 ~a~n~~~~~~~~~~i~Vi   91 (92)
T d1epfa2          74 EGRILARGEINFKDIQVI   91 (92)
T ss_dssp             EEEEGGGTEEEEEEEEEE
T ss_pred             EEEECcCCEEEEEEEEEE
Confidence            999988877666666653

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=6.7e-14  Score=97.76  Aligned_cols=81  Identities=23%  Similarity=0.386  Sum_probs=65.0

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |.|...|.+..+.+|+.+.|.|.+.|.|.| .|.|++++..+....                  .+.+.|.....+|+|.
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~------------------~~~~~l~~~~~~d~G~   63 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA------------------PSPSVLNVTGVTQSTM   63 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE------------------ESSEEEEECCCSSCEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC------------------CcceEEecCCccccEE
Confidence            667777889999999999999999999998 899999997764211                  2345566667789999


Q ss_pred             EEEEEEeCCceE-EEEEEEEE
Q psy12695        225 YTCRAKNGAGEV-FTNISLNV  244 (369)
Q Consensus       225 Y~C~a~n~~g~~-~~~~~l~v  244 (369)
                      |.|.|.|..|.. +..++|.|
T Consensus        64 Y~C~A~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          64 FSCEAHNLKGLASSRTATVHL   84 (85)
T ss_dssp             EEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEEEcCCCcEEEEEEEEEE
Confidence            999999999975 44677765

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.4e-14  Score=100.39  Aligned_cols=88  Identities=22%  Similarity=0.411  Sum_probs=68.5

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      .|.++++.+|+.+.|.|.+.|.|.|.+.|++++..+.....       .............|.|.+++.+|+|.|+|.|.
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~-------~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   74 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQ-------LYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE   74 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEE-------EEEEEETTEEEEEEEESSCCGGGCEEEEEEES
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCceEEEEEeeccccccee-------eeeeecccCceeeEEECCCCcccCEEEEEEEE
Confidence            36788999999999999999999999999999987653211       11111122234679999999999999999999


Q ss_pred             eCCceE-EEEEEEEEe
Q psy12695        231 NGAGEV-FTNISLNVI  245 (369)
Q Consensus       231 n~~g~~-~~~~~l~v~  245 (369)
                      |..|.. +..+.|.|.
T Consensus        75 N~~G~~~S~~~~l~V~   90 (91)
T d1rhfa1          75 DGGETEISQPVWLTVE   90 (91)
T ss_dssp             SCTTCEECCCEEEEEE
T ss_pred             ECCCCEEEEEEEEEEE
Confidence            999975 556777774

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8.8e-15  Score=101.87  Aligned_cols=74  Identities=31%  Similarity=0.438  Sum_probs=63.1

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      .+.++++.+|+.+.|.|.+.|.|.|.+.|++++..+..                      .+.+.+++.+|+|.|.|.|.
T Consensus        10 ~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~----------------------~~~~~~v~~~d~G~Y~C~A~   67 (84)
T d2oz4a3          10 CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP----------------------IGESVTVTRDLEGTYLCRAR   67 (84)
T ss_dssp             SCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECC----------------------TTSCEECCGGGCEEEEEEEE
T ss_pred             CCccEEEeCCCEEEEEEEEeEcCccEEEEEEeecccee----------------------eeeeeccccCCCCEEEEEEE
Confidence            36788999999999999999999999999998876542                      12234577899999999999


Q ss_pred             eCCceEEEEEEEEEee
Q psy12695        231 NGAGEVFTNISLNVIK  246 (369)
Q Consensus       231 n~~g~~~~~~~l~v~~  246 (369)
                      |..|..+..+.|.|..
T Consensus        68 N~~G~~~~~~~l~V~~   83 (84)
T d2oz4a3          68 STQGEVTREVTVNVLS   83 (84)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             cCCCEEEEEEEEEEEC
Confidence            9999999999998875

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.5e-13  Score=97.07  Aligned_cols=80  Identities=19%  Similarity=0.316  Sum_probs=65.2

Q ss_pred             CCCeeeccCCeEEEEEEee-CCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        152 TPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      +....+.+|+++.|.|.+. |.|.|.+.|++.+..+..              .......+.|.|.+++.+|+|.|+|.|.
T Consensus        10 ~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~--------------~~~~~~~~~L~i~~v~~~D~G~Y~C~As   75 (90)
T d1gsma1          10 EPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA--------------VQSDTGRSVLTVRNASLSAAGTRVCVGS   75 (90)
T ss_dssp             CSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC--------------EEEESSEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee--------------eeccCceeeEEcCccChhhCCcEEEEEE
Confidence            3457788999999999984 899999999986643311              1123346789999999999999999999


Q ss_pred             eCCceEEEEEEEEEe
Q psy12695        231 NGAGEVFTNISLNVI  245 (369)
Q Consensus       231 n~~g~~~~~~~l~v~  245 (369)
                      |..|..+.++.|.|.
T Consensus        76 n~~g~~~~s~~l~Vy   90 (90)
T d1gsma1          76 CGGRTFQHTVQLLVY   90 (90)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCcEEEEEEEEEC
Confidence            999999999998874

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.45  E-value=2.2e-13  Score=97.90  Aligned_cols=87  Identities=20%  Similarity=0.311  Sum_probs=68.5

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      +.++.+.+|+++.|.|.+.|.|.|.+.|++++..+........       ..........|.|.+++.+|+|.|+|.|.|
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~-------~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   82 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRI-------TRHNRTSGKRLLFKTTLPEDEGVYTCEVDN   82 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSE-------ESCSSSTTSEEEESSCCGGGCEEEEEEECC
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeee-------eeeeecCCCEEEEEeccccccEEEEEEEEE
Confidence            4678899999999999999999999999999988754332211       111122346799999999999999999999


Q ss_pred             CCceE-EEEEEEEEe
Q psy12695        232 GAGEV-FTNISLNVI  245 (369)
Q Consensus       232 ~~g~~-~~~~~l~v~  245 (369)
                      ..|.. +..+.|.|.
T Consensus        83 ~~G~~~s~s~~L~Vl   97 (97)
T d1biha3          83 GVGKPQKHSLKLTVV   97 (97)
T ss_dssp             SSSSCEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEEC
Confidence            99985 456788773

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=5.9e-13  Score=95.59  Aligned_cols=89  Identities=17%  Similarity=0.319  Sum_probs=66.9

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCC-CeEEEEeCCeEeeecccccccCCcceEEE-EeecceeeEEEcccCCCCCEEEEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPV-PKIKWIFKEKIIANISSGLANMNKRQYII-KTINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~-p~i~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      ..|.+..+.+|+.+.|.|.+.|.|. |.+.|+++++......       ..++.. ......+.|.|.+++.+|+|.|.|
T Consensus         5 i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~-------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C   77 (97)
T d1epfa1           5 IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPN-------QQRISVVWNDDDSSTLTIYNANIDDAGIYKC   77 (97)
T ss_dssp             EESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCB-------SSSEEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             EECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeec-------cccEEEEeecCcceEEEcccCchhhceEEEE
Confidence            4567889999999999999999985 7999999654332111       112222 233456789999999999999999


Q ss_pred             EEEeCCceE-EEEEEEEEe
Q psy12695        228 RAKNGAGEV-FTNISLNVI  245 (369)
Q Consensus       228 ~a~n~~g~~-~~~~~l~v~  245 (369)
                      .|.|..|.. ++.+.|.|.
T Consensus        78 ~a~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          78 VVTAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             EEEETTTEEEEEEEEEEEE
T ss_pred             EEEeCCCcEEEEEEEEEEE
Confidence            999999974 456777764

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.8e-14  Score=102.68  Aligned_cols=89  Identities=22%  Similarity=0.359  Sum_probs=71.5

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE-
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG-  223 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-  223 (369)
                      .|.+...+.+.++.+|+.+.|.|.+.|.|.|.+.|++++..+......           ........|.|.+++.+|.| 
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~-----------~~~~~~~~L~i~~~~~~d~G~   70 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK-----------SGGLPSLGLTLANVTSDLNRK   70 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC-----------CCCSSEEEEEEESCCSTTTTC
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeee-----------eeeccceeEEEccccccccce
Confidence            366666778899999999999999999999999999998655321111           11234568999999999999 


Q ss_pred             EEEEEEEeCCceEEEEEEEEE
Q psy12695        224 IYTCRAKNGAGEVFTNISLNV  244 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v  244 (369)
                      .|.|.|.|..|.....+.|.|
T Consensus        71 ~Y~C~a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          71 NVTCWAENDVGRAEVSVQVNV   91 (92)
T ss_dssp             CEEECCEETTEECCEEECCCC
T ss_pred             EEEEEEEcCCCEEEEEEEEEE
Confidence            799999999999888877655

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=1.4e-13  Score=97.29  Aligned_cols=80  Identities=24%  Similarity=0.268  Sum_probs=65.9

Q ss_pred             CCCCeeeccCCeEEEEEEee-CCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEE
Q psy12695        151 ITPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA  229 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  229 (369)
                      .+....+.+|+++.|.|.+. |.|.|.+.|++++..+....         . .    ...+.|.|.+++.+|+|.|.|.|
T Consensus         8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~---------~-~----~~~~~L~i~~v~~~d~G~Y~C~a   73 (89)
T d1gl4b_           8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR---------A-M----DFNGILTIRNVQPSDAGTYVCTG   73 (89)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT---------E-E----EETTEEEECSCCGGGCEEEEEEE
T ss_pred             CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccc---------c-E----eeceEEEEecCCcccCEEEEEEE
Confidence            45678899999999999996 78889999999876553211         1 1    12457999999999999999999


Q ss_pred             EeCCceEEEEEEEEE
Q psy12695        230 KNGAGEVFTNISLNV  244 (369)
Q Consensus       230 ~n~~g~~~~~~~l~v  244 (369)
                      .|..|..+..+.|.|
T Consensus        74 ~N~~G~~~~~~~l~V   88 (89)
T d1gl4b_          74 SNMFAMDQGTATLHV   88 (89)
T ss_dssp             ECSSCEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEE
Confidence            999999999888877

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=7.4e-14  Score=118.25  Aligned_cols=105  Identities=24%  Similarity=0.468  Sum_probs=93.0

Q ss_pred             CCCC-CeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC---hhhccCCcccCeeeccCCcccc-cCCccccc
Q psy12695         35 CPST-CECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD---RYTFRKLINLVELDLSYNQIQF-VPSHILDS  109 (369)
Q Consensus        35 cp~~-C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~---~~~f~~l~~L~~L~Ls~N~l~~-i~~~~f~~  109 (369)
                      |+.+ |.|.    .+.++|++.+|+.+|..+|.+++.|+|++|+|.   +.+|.++++|++|+|++|.+.. ++.++|.+
T Consensus         1 ~~~~~C~C~----~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~   76 (242)
T d1xwdc1           1 CHHRICHCS----NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN   76 (242)
T ss_dssp             CCCSSEEEC----SSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEES
T ss_pred             CcCCcCCCc----CCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccc
Confidence            6655 9998    468999999999999999999999999999954   6799999999999999999865 88999999


Q ss_pred             cccccccccc-ccceecccCCcccccCcCcccccc
Q psy12695        110 ILELRELKLS-GNPIQKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       110 l~~L~~L~L~-~N~l~~~~~~~f~~l~~l~~~~~~  143 (369)
                      ++.++.|++. .|.+..+.++.|.++++|....+.
T Consensus        77 l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~  111 (242)
T d1xwdc1          77 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS  111 (242)
T ss_dssp             CTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccc
Confidence            9999999875 588999999999999988776654

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.41  E-value=2.2e-13  Score=97.33  Aligned_cols=82  Identities=23%  Similarity=0.299  Sum_probs=65.8

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |.|...|.++.+.+|+.+.|.|.+.|.|.| .+.|++++..+.....        ...  .....+.|.|.++..+|+|.
T Consensus         3 P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~--------~~~--~~~~~~~L~i~~v~~~D~G~   72 (94)
T d1biha1           3 PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH--------NAA--LRKDEGSLVFLRPQASDEGH   72 (94)
T ss_dssp             CEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTT--------TEE--ECTTSCCEEESSCCGGGCEE
T ss_pred             CEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecc--------eee--ecccceEEEEeccChhcCeE
Confidence            566777888999999999999999999976 6999999877643221        111  12345689999999999999


Q ss_pred             EEEEEEeCCceEE
Q psy12695        225 YTCRAKNGAGEVF  237 (369)
Q Consensus       225 Y~C~a~n~~g~~~  237 (369)
                      |.|.|.|..|...
T Consensus        73 Y~C~a~N~~G~~~   85 (94)
T d1biha1          73 YQCFAETPAGVAS   85 (94)
T ss_dssp             EEEEEEETTEEEE
T ss_pred             EEEEEEeCCCEEE
Confidence            9999999999754

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.1e-13  Score=97.26  Aligned_cols=95  Identities=15%  Similarity=0.161  Sum_probs=68.2

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCC-CCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEE
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSP-VPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYT  226 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p-~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  226 (369)
                      +...++..++.+|+++.|.|.+.|.| .|.|.|+++++.+........    .............|.|.+++.+|+|.|.
T Consensus         6 fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~----~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   81 (104)
T d2aw2a1           6 YIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQ----TSWKEEKNISFFILHFEPVLPNDNGSYR   81 (104)
T ss_dssp             CCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSC----EEEEECSSCEEEEEEESSCCGGGCEEEE
T ss_pred             EEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceee----eeEEecCCceEEEEEEccccHHHCCeEE
Confidence            34456778899999999999999998 589999998765543221110    0011111122346999999999999999


Q ss_pred             EEEEeCCceEE-EEEEEEEee
Q psy12695        227 CRAKNGAGEVF-TNISLNVIK  246 (369)
Q Consensus       227 C~a~n~~g~~~-~~~~l~v~~  246 (369)
                      |.|.|..|... ..+.|.|..
T Consensus        82 C~A~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          82 CSANFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EEEEETTEEEECCCEEEEEEC
T ss_pred             EEEEcCCCeEEEEEEEEEEEE
Confidence            99999999854 467887754

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.7e-13  Score=95.13  Aligned_cols=90  Identities=20%  Similarity=0.285  Sum_probs=63.7

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEe-C-CeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIF-K-EKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      |.+. .+.++.+.+|+++.|.|.+.|.|.|.+.|++ . +.....        .............+.|.|.++..+|+|
T Consensus         3 P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~L~I~~v~~~D~G   73 (96)
T d2c9aa1           3 PHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAP--------LKEIKVTSSRRFIASFNVVNTTKRDAG   73 (96)
T ss_dssp             CEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCC--------EEEEEEEETTEEEEEEEECSCCGGGCS
T ss_pred             Ceec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeec--------CCceeEEEeecCceEEEECCCCHHHCe
Confidence            5555 4788999999999999999999988765543 2 221111        011111222223467999999999999


Q ss_pred             EEEEEEEeCCceEE-EEEEEEE
Q psy12695        224 IYTCRAKNGAGEVF-TNISLNV  244 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~-~~~~l~v  244 (369)
                      .|+|.|.|..|... ..+.|.|
T Consensus        74 ~Y~C~a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          74 KYRCMIRTEGGVGISNYAELVV   95 (96)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEeCCCeEEEEEEEEEE
Confidence            99999999999864 4477776

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3e-12  Score=93.22  Aligned_cols=86  Identities=20%  Similarity=0.203  Sum_probs=64.4

Q ss_pred             cCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEEE
Q psy12695        159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVFT  238 (369)
Q Consensus       159 ~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~  238 (369)
                      .+....+.|.+.|.|.|.+.|++++..+........     ..........+.|.|.+++.+|+|.|+|.|+|..|..+.
T Consensus        16 ~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~-----~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~   90 (105)
T d1wwca_          16 LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHV-----EYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQ   90 (105)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEE-----EEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEE
T ss_pred             EEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceee-----eEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEE
Confidence            445566888999999999999999987654221110     011111123457999999999999999999999999999


Q ss_pred             EEEEEEeecCC
Q psy12695        239 NISLNVIKVET  249 (369)
Q Consensus       239 ~~~l~v~~~~~  249 (369)
                      .+.|.|...|.
T Consensus        91 ~~~v~V~~~P~  101 (105)
T d1wwca_          91 TINGHFLKEPF  101 (105)
T ss_dssp             EEEECCSCCCC
T ss_pred             EEEEEEEeCCC
Confidence            99999877653

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.36  E-value=2.1e-12  Score=90.66  Aligned_cols=78  Identities=23%  Similarity=0.336  Sum_probs=62.3

Q ss_pred             CCeeeccCCeEEEEEEeeC-CCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        153 PDVTAEENENVTLSCRATG-SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ....+.+|++++|.|.+.+ .|.+.+.|++++..+...                 .....|.|.+++.+|+|.|.|.|.|
T Consensus         8 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~-----------------~~~~~l~i~~v~~~dsG~Y~C~a~n   70 (88)
T d2fcba2           8 PHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS-----------------RSDPNFSIPQANHSHSGDYHCTGNI   70 (88)
T ss_dssp             SCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----------------SSCCEEEETTCCGGGCEEEEEEEEE
T ss_pred             CCCeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc-----------------ccccccccCccCHHHCCeEEEEEEe
Confidence            4566889999999999965 566689999999766421                 2245799999999999999999999


Q ss_pred             CCceE-EEEEEEEEeec
Q psy12695        232 GAGEV-FTNISLNVIKV  247 (369)
Q Consensus       232 ~~g~~-~~~~~l~v~~~  247 (369)
                      ..|.. +..+.|.|..+
T Consensus        71 ~~g~~~S~~v~l~V~~P   87 (88)
T d2fcba2          71 GYTLYSSKPVTITVQAP   87 (88)
T ss_dssp             TTEEEECCCEEEEECCC
T ss_pred             CCCCEEeeeEEEEEeCC
Confidence            99875 45677877653

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=1.1e-12  Score=95.02  Aligned_cols=96  Identities=24%  Similarity=0.477  Sum_probs=68.6

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeec--ccccccCC-cceEEEEeecceeeEEEcccCCCCC
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANI--SSGLANMN-KRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      |.+...+..+.+.+|+++.|.|.+.|.|.|.+.|++.+......  ........ ..+...    ..+.|.|.+++.+|+
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~tL~I~~v~~~D~   77 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF----SSSGITFSSVTRKDN   77 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE----ETTEEEESCCCGGGC
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEe----cCCEEEEeECCccCC
Confidence            44556677889999999999999999999999999865432221  11111000 111111    235799999999999


Q ss_pred             EEEEEEEEeCCceEEEEEEEEEe
Q psy12695        223 GIYTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       223 G~Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      |.|.|.|.|..|.....+.+.|.
T Consensus        78 G~Y~C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          78 GEYTCMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EEEEEEEEETTSSSEEEEEEEEE
T ss_pred             EEEEEEEEECCCCEEEEEEEEEE
Confidence            99999999999997777666654

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.34  E-value=4.7e-13  Score=96.14  Aligned_cols=88  Identities=26%  Similarity=0.416  Sum_probs=66.2

Q ss_pred             CCccCCCCCeeeccC---CeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        146 PNIRPITPDVTAEEN---ENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       146 p~i~~~~~~~~~~~G---~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      |.+...|.+..+.+|   +.++|.|.+.|.|.|.+.|++++..+......       .+.   ......|.|..+..+|+
T Consensus         5 P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~-------~~~---~~~~~~l~i~~~~~~d~   74 (97)
T d1cs6a1           5 PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDS-------RYR---LVAGDLVISNPVKAKDA   74 (97)
T ss_dssp             EEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTS-------SEE---EETTEEEEESCCHHHHC
T ss_pred             CEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCc-------eEE---eeeeeEEEEecccccCC
Confidence            555666777777655   79999999999999999999999877543221       111   12345788888999999


Q ss_pred             EEEEEEEEeCCceEE-EEEEEE
Q psy12695        223 GIYTCRAKNGAGEVF-TNISLN  243 (369)
Q Consensus       223 G~Y~C~a~n~~g~~~-~~~~l~  243 (369)
                      |.|.|.|.|..|... ..+.|+
T Consensus        75 G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          75 GSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             EEEEEEEEETTEEEECCCEEEE
T ss_pred             EEEEEEEEECCCEEEEEEEEEe
Confidence            999999999999863 456553

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.6e-13  Score=98.93  Aligned_cols=97  Identities=21%  Similarity=0.418  Sum_probs=68.9

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |.+........+.+|+.++|.|.+ .|.|.|.+.|++++..+...............  ......+.|.|.+++.+|+|.
T Consensus         3 P~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~l~I~~v~~~D~G~   80 (104)
T d1nbqa2           3 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY--VLNPTTGELVFDPLSASDTGE   80 (104)
T ss_dssp             CCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCC--CCCTTTCCEEESSCCGGGCCC
T ss_pred             CcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcE--EEeecccceEECCCCcccCcE
Confidence            444444455678899999999998 58999999999999876544332221111111  112235689999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEE
Q psy12695        225 YTCRAKNGAGEVFTNISLNV  244 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v  244 (369)
                      |.|.|.|..|....++.+.|
T Consensus        81 Y~C~a~N~~G~~~~s~~v~v  100 (104)
T d1nbqa2          81 YSCEARNGYGTPMTSNAVRM  100 (104)
T ss_dssp             EEEEEECSSSCCEECCCBCC
T ss_pred             EEEEEEECCCceEEEEEEEE
Confidence            99999999998766544433

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5e-12  Score=91.59  Aligned_cols=87  Identities=18%  Similarity=0.269  Sum_probs=66.3

Q ss_pred             ccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceEE
Q psy12695        158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEVF  237 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~  237 (369)
                      ..++...+.|.+.|.|.|.+.|++++..+.+......    ...........+.|.|.+++..|+|.|+|.|.|..|..+
T Consensus        14 ~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~----~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~   89 (103)
T d1wwbx_          14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICT----KIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDE   89 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEE----EEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEE
T ss_pred             ccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeee----eecccccccceEEEEECCCCHHhCceEEEEEeccCCEEE
Confidence            4678888999999999999999999988764221110    000000111245799999999999999999999999999


Q ss_pred             EEEEEEEeecC
Q psy12695        238 TNISLNVIKVE  248 (369)
Q Consensus       238 ~~~~l~v~~~~  248 (369)
                      ..+.|.|...|
T Consensus        90 ~~~~v~V~~~P  100 (103)
T d1wwbx_          90 KQISAHFMGWP  100 (103)
T ss_dssp             EEEEECCSCCC
T ss_pred             EEEEEEEEeCC
Confidence            99999887765

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.33  E-value=2.5e-12  Score=90.40  Aligned_cols=78  Identities=22%  Similarity=0.411  Sum_probs=61.6

Q ss_pred             CCCeeeccCCeEEEEEEeeC-CCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        152 TPDVTAEENENVTLSCRATG-SPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      +....+.+|++++|.|.+.+ .|.+.+.|++++..+...                 .....|.|.+++.+|+|.|.|.|.
T Consensus         9 ~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~-----------------~~~~~l~I~~v~~~dsG~Y~C~a~   71 (89)
T d1fnla2           9 APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-----------------HHNSDFHIPKATLKDSGSYFCRGL   71 (89)
T ss_dssp             CSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-----------------EECCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCeEccCCeEEEEEEecCCCCCcEEEEEEccccccee-----------------ccccccEECccceeccceEEEEEE
Confidence            45566899999999999974 566689999998765421                 124579999999999999999999


Q ss_pred             eCCceEE-EEEEEEEee
Q psy12695        231 NGAGEVF-TNISLNVIK  246 (369)
Q Consensus       231 n~~g~~~-~~~~l~v~~  246 (369)
                      |..|... ..+.|+|..
T Consensus        72 n~~~~~~S~~v~itV~E   88 (89)
T d1fnla2          72 VGSKNVSSETVNITITQ   88 (89)
T ss_dssp             ETTEEEECCCEEEEEEC
T ss_pred             eCCCCeEEeeEEEEEEe
Confidence            9998753 567777754

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=1.3e-12  Score=96.07  Aligned_cols=92  Identities=20%  Similarity=0.324  Sum_probs=64.5

Q ss_pred             CeeeccCCeEEEEEEee-CCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        154 DVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ...+.+|+.+.|.|.+. |.|.+.+.|++++..+......... .............+.|.|.+++.+|+|.|+|.|.|.
T Consensus        11 ~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~   89 (110)
T d1f97a2          11 PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTR-AFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNG   89 (110)
T ss_dssp             CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CB-SCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECS
T ss_pred             CCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEE-eecCceEEEeecccceEECCCCccCCEEEEEEEEEC
Confidence            34678999999999984 8999999999998776543221111 111111122334568999999999999999999999


Q ss_pred             CceEEE--EEEEEEee
Q psy12695        233 AGEVFT--NISLNVIK  246 (369)
Q Consensus       233 ~g~~~~--~~~l~v~~  246 (369)
                      .|....  .+.|.|..
T Consensus        90 ~G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          90 YGTAMRSEAAHMDAVE  105 (110)
T ss_dssp             SSCCEECCCEEEEEES
T ss_pred             CCcEEEEEEEEEEEEe
Confidence            998655  45666654

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.3e-12  Score=89.54  Aligned_cols=86  Identities=24%  Similarity=0.309  Sum_probs=65.0

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      |...+.++++.+|+.+.|.|.+ +.|.|.+.|++++..+....       ..++.+........|.|.+++.+|+|.|.|
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~-------~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   74 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGP-------KSRYRIRVEGKKHILIIEGATKADAAEYSV   74 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCST-------TCSEEEEEETTEEEEEEEEECTTTCSEEEE
T ss_pred             EEcCCCCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCCC-------CccEEEEEeCCccEEEECccccccCEEEEE
Confidence            3455688999999999999999 56888999999998765322       123344444556789999999999999999


Q ss_pred             EEEeCCceEEEEEEEEEe
Q psy12695        228 RAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       228 ~a~n~~g~~~~~~~l~v~  245 (369)
                      .|.|.    ...+.|.|.
T Consensus        75 ~a~n~----~~~a~l~V~   88 (90)
T d1x44a1          75 MTTGG----QSSAKLSVD   88 (90)
T ss_dssp             EETTE----EEEEEEEEE
T ss_pred             EEecc----eEEEEEEEE
Confidence            99774    344555554

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.5e-12  Score=92.53  Aligned_cols=91  Identities=18%  Similarity=0.251  Sum_probs=66.4

Q ss_pred             CCCeeeccCCeEE---EEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEe-----ecceeeEEEcccCCCCCE
Q psy12695        152 TPDVTAEENENVT---LSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKT-----INSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       152 ~~~~~~~~G~~~~---l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G  223 (369)
                      |..+.+..|....   +.|.+.|.|.|.+.|++++..+......       ......     ....+.|.|.++...|+|
T Consensus         4 p~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~-------~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   76 (107)
T d1he7a_           4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFI-------FTEFLEPAANETVRHGCLRLNQPTHVNNG   76 (107)
T ss_dssp             CCCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSE-------EEEEECCCSSCCCEEEEEEEESCCGGGCE
T ss_pred             CCEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccce-------eeeeeeeeeeeeccceEEEECcccHHHCc
Confidence            3445555555544   5568999999999999999876532211       111100     112357999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        224 IYTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      .|.|.|.|..|...+.+.|.|..+|.
T Consensus        77 ~Y~C~A~N~~G~~~~~i~v~v~~~P~  102 (107)
T d1he7a_          77 NYTLLAANPFGQASASIMAAFMDNPF  102 (107)
T ss_dssp             EEEEEEEETTEEEEEEEEECCCSCTT
T ss_pred             EEEEEEEeCCCEEEEEEEEEEEcCCC
Confidence            99999999999999999999987763

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=3.8e-12  Score=91.05  Aligned_cols=85  Identities=24%  Similarity=0.379  Sum_probs=66.8

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ..+.++.+|+.++|.|.+.+ +.+.+.|++++..+....         +..  .....+.|.|.+++.+|+|.|.|.|.|
T Consensus        10 ~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~---------~~~--~~~~~~~L~I~~v~~~d~G~Y~C~a~N   77 (96)
T d1l6za2          10 VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTE---------RMT--LSQNNSILRIDPIKREDAGEYQCEISN   77 (96)
T ss_dssp             CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCT---------TEE--EETTTTEEEECSCCGGGCEEEEEEEES
T ss_pred             cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeeccccc---------cee--ccCCceEEEEeccchhhceEEEEEEEe
Confidence            35678899999999999876 567899999998775322         111  223456899999999999999999999


Q ss_pred             CCceEE-EEEEEEEeecC
Q psy12695        232 GAGEVF-TNISLNVIKVE  248 (369)
Q Consensus       232 ~~g~~~-~~~~l~v~~~~  248 (369)
                      ..|... ..+.|.|...|
T Consensus        78 ~~g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          78 PVSVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             SSCCEECCCCEEEECCSC
T ss_pred             CCCCeEEEeEEEEEEcCC
Confidence            999864 46888887665

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.5e-12  Score=95.29  Aligned_cols=95  Identities=21%  Similarity=0.275  Sum_probs=68.0

Q ss_pred             CCccCCC-CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEE------eecceeeEEEcccC
Q psy12695        146 PNIRPIT-PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIK------TINSLSNLTIVAVT  218 (369)
Q Consensus       146 p~i~~~~-~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~L~I~~v~  218 (369)
                      |.|.... ..+.+..|+.+.|.|.+.|.|.|.+.|++++..+..........   .....      .....+.|.|.+++
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~I~~v~   78 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGED---YYSVENPANKRRSTLITVLNISEIE   78 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEE---EEEECCSSCGGGEEEEEEEEESSCC
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeee---eeeeccceeeecccceEEEEEeecc
Confidence            4454433 33667889999999999999999999999988765332211100   00000      00123579999999


Q ss_pred             CCCCE-EEEEEEEeCCceEEEEEEEE
Q psy12695        219 MSDSG-IYTCRAKNGAGEVFTNISLN  243 (369)
Q Consensus       219 ~~D~G-~Y~C~a~n~~g~~~~~~~l~  243 (369)
                      .+|.| .|+|.|.|..|..++.+.|.
T Consensus        79 ~~D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          79 SRFYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GGGGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             hHHCCcEEEEEEEeCCCeEEEEEEEE
Confidence            99999 59999999999999888875

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.5e-12  Score=94.90  Aligned_cols=94  Identities=23%  Similarity=0.476  Sum_probs=67.4

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccc--c-CCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLA--N-MNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +...+..+.+.+|+++.|.|.+.|.|.|.+.|++++..+........  . ....+...    ..+.|.|.+++.+|+|.
T Consensus         7 V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~   82 (105)
T d1nbqa1           7 VHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF----LPTGITFKSVTREDTGT   82 (105)
T ss_dssp             EECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEE----ETTEEECSCCCTTSCSE
T ss_pred             EECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeee----cCceEEEecccccceee
Confidence            33456678899999999999999999999999997654432111110  0 00111111    13579999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEe
Q psy12695        225 YTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      |.|.|.|..|.....+.+.|.
T Consensus        83 Y~C~a~n~~G~~~~~~~v~v~  103 (105)
T d1nbqa1          83 YTCMVSEEGGNSYGEVKVKLI  103 (105)
T ss_dssp             EEEEEEETTSSCEECCEEECC
T ss_pred             EEEEEEECCCCEEEEEEEEEE
Confidence            999999999998877666553

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.5e-12  Score=89.69  Aligned_cols=80  Identities=21%  Similarity=0.279  Sum_probs=63.2

Q ss_pred             CCCeeeccCCeEEEEEEeeCC-CCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        152 TPDVTAEENENVTLSCRATGS-PVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      +....+.+|+.++|.|.+.+. |...+.|++++..+....                 ....|.|.+++.+|+|.|.|.|.
T Consensus         7 ~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~-----------------~~~~l~i~~~~~~dsG~Y~C~a~   69 (89)
T d1f2qa2           7 ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-----------------ENHNISITNATVEDSGTYYCTGK   69 (89)
T ss_dssp             ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-----------------CSSEEEESSCCGGGCEEEEEEEE
T ss_pred             CCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc-----------------ccceEEEeeeeeecCcEEEEEEE
Confidence            345668899999999999765 455799999997664211                 23579999999999999999999


Q ss_pred             eCCceE-EEEEEEEEeecC
Q psy12695        231 NGAGEV-FTNISLNVIKVE  248 (369)
Q Consensus       231 n~~g~~-~~~~~l~v~~~~  248 (369)
                      |..|.. +..+.|.|...|
T Consensus        70 n~~~~~~S~~v~i~V~~~P   88 (89)
T d1f2qa2          70 VWQLDYESEPLNITVIKAP   88 (89)
T ss_dssp             ETTEEEECCCEEEEEECSC
T ss_pred             eCCCCeEeeeEEEEEEeCC
Confidence            998874 466788887664

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.4e-12  Score=91.25  Aligned_cols=79  Identities=18%  Similarity=0.322  Sum_probs=61.0

Q ss_pred             CCCccCCCCCeeeccCCeEEEEEEeeCCCC-CeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        145 SPNIRPITPDVTAEENENVTLSCRATGSPV-PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       145 ~p~i~~~~~~~~~~~G~~~~l~C~~~g~p~-p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      .|.+...+..+++.+|+++.|.|.+.|.|+ +.|.|++++..+...         .+..   ...+..|.|.+++.+|+|
T Consensus         6 ~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~---------~~~~---~~~~~~L~I~~v~~~D~G   73 (93)
T d1n26a1           6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSH---------PSRW---AGMGRRLLLRSVQLHDSG   73 (93)
T ss_dssp             CCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCC---------CEEE---EEESSEEEECSCCGGGCE
T ss_pred             CCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccce---------eeEE---ecCCCEEEECCCChhcCE
Confidence            466777778899999999999999998775 589999988765421         1111   123457999999999999


Q ss_pred             EEEEEEEeCCce
Q psy12695        224 IYTCRAKNGAGE  235 (369)
Q Consensus       224 ~Y~C~a~n~~g~  235 (369)
                      .|+|.|.|..+.
T Consensus        74 ~Y~C~a~n~~~~   85 (93)
T d1n26a1          74 NYSCYRAGRPAG   85 (93)
T ss_dssp             EEEEESSSSCSC
T ss_pred             EEEEEECCcccc
Confidence            999999886543

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.3e-11  Score=87.79  Aligned_cols=87  Identities=18%  Similarity=0.337  Sum_probs=63.3

Q ss_pred             CCccCCC-CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        146 PNIRPIT-PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       146 p~i~~~~-~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |.+.... ....+.+|+.+.|.|.+. .|.|.+.|++++..+....        .++.+....+...|.|.++...|+|.
T Consensus         6 ~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~--------~~~~~~~~~~~~~L~I~~~~~~D~G~   76 (94)
T d1pd6a_           6 TAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSG--------SKYIFESIGAKRTLTISQCSLADDAA   76 (94)
T ss_dssp             SSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCS--------SSSEEEEETTEEEEEECSCSSSSCEE
T ss_pred             CcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeee--------eeEeeeccCCeEEeecCCCCceecEE
Confidence            3344333 346789999999999985 5889999999998875321        23334445566789999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEe
Q psy12695        225 YTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      |+|.|.|.    ..++.|.|.
T Consensus        77 Y~c~a~n~----~~s~~l~V~   93 (94)
T d1pd6a_          77 YQCVVGGE----KCSTELFVK   93 (94)
T ss_dssp             EEEEETTE----EECCEEEEE
T ss_pred             EEEEEeeE----EEEEEEEEE
Confidence            99999663    344555553

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=9.3e-12  Score=89.67  Aligned_cols=88  Identities=18%  Similarity=0.226  Sum_probs=68.4

Q ss_pred             CCCeeeccCCeEEEEEEee-CCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        152 TPDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      +..+.+.+|+.+.|.|.+. +.|.+.|.|++++..+.....     ...+..    ...+.|.|.+++.+|+|.|+|.|.
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~-----~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~   79 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTE-----QASRIH----QHKEKLWFVPAKVEDSGHYYCVVR   79 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCC-----TTSSEE----EETTEEEETTCCGGGCEEEEEEEE
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccc-----cceEEe----ccCCEEEeccceecCCEEEEEEEE
Confidence            4567788999999999884 789999999998754332111     111111    124689999999999999999999


Q ss_pred             eCCceEEEEEEEEEeecC
Q psy12695        231 NGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       231 n~~g~~~~~~~l~v~~~~  248 (369)
                      |..|.....+.|.|....
T Consensus        80 N~~g~~~~~~~L~V~~~~   97 (101)
T d1iray1          80 NSSYCLRIKISAKFVENE   97 (101)
T ss_dssp             ETTEEEEEEEEEEEECCC
T ss_pred             CCCCeEEEEEEEEEEeCC
Confidence            999999999999998654

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.25  E-value=5.9e-12  Score=91.58  Aligned_cols=80  Identities=21%  Similarity=0.331  Sum_probs=61.9

Q ss_pred             CCCeeeccCCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        152 TPDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      ...+.+.+|+.+.|.|.+ .|.|.|.+.|++++..+.....      .+++   .....+.|.|.+++.+|+|.|+|.|.
T Consensus        11 ~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~------~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~   81 (105)
T d1cs6a2          11 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPAD------GRRF---VSQTTGNLYIAKTEASDLGNYSCFAT   81 (105)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCC------SSEE---ECTTTCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeecccccccc------ceee---eecCCCEEeecccccccCcEEEEEEE
Confidence            356889999999999998 7899999999998865432111      1111   12345689999999999999999999


Q ss_pred             eCCceEEEEE
Q psy12695        231 NGAGEVFTNI  240 (369)
Q Consensus       231 n~~g~~~~~~  240 (369)
                      |..|.....+
T Consensus        82 N~~g~~~~~v   91 (105)
T d1cs6a2          82 SHIDFITKSV   91 (105)
T ss_dssp             EEETTEEEEE
T ss_pred             ECCCCEEEEE
Confidence            9998876653

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.23  E-value=2e-12  Score=91.02  Aligned_cols=78  Identities=13%  Similarity=0.101  Sum_probs=62.4

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEE
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      +..+..++++.+|+++.|.|.+ +.|.|.+.|++++..+...         .++.+....+...|.|.+++.+|+|.|.|
T Consensus         4 i~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~---------~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c   73 (89)
T d1tiua_           4 VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTAS---------PDCEIIEDGKKHILILHNCQLGMTGEVSF   73 (89)
T ss_dssp             CSBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSS---------SSCEEEECSSCEEEECCSCCSCCCSEECC
T ss_pred             EEcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccc---------eeEEEEeeceeEEEEEcCCChhcCEEEEE
Confidence            4556789999999999999998 5789999999999876532         23334444556789999999999999999


Q ss_pred             EEEeCCce
Q psy12695        228 RAKNGAGE  235 (369)
Q Consensus       228 ~a~n~~g~  235 (369)
                      .|.|..+.
T Consensus        74 ~a~n~~~s   81 (89)
T d1tiua_          74 QAANAKSA   81 (89)
T ss_dssp             BCSSCBCC
T ss_pred             EECceEEE
Confidence            99876544

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=9.7e-12  Score=87.90  Aligned_cols=79  Identities=18%  Similarity=0.338  Sum_probs=60.5

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      +..+.+|+++.|.|.+.| |.|.+.|++++..+......        +.   ....+.|.|.+++.+|+|.|+|.|.|..
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~--------~~---~~~~~~L~I~~v~~~DsG~Y~C~A~n~~   73 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPK--------YG---LMGRKNLLIFNLSEGDSGVYQCLSEERV   73 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSS--------BC---CTTTTCEEECSCCGGGCEEEEEEEEEEC
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeee--------ee---cceeeEEEECCCCHHHCcEEEEEEEEcC
Confidence            467899999999999998 67899999998876543221        11   1234579999999999999999999988


Q ss_pred             ceEEEEEEEEE
Q psy12695        234 GEVFTNISLNV  244 (369)
Q Consensus       234 g~~~~~~~l~v  244 (369)
                      |.......+.+
T Consensus        74 g~~~~~~~l~~   84 (92)
T d1olza1          74 KNKTVFQVVAK   84 (92)
T ss_dssp             SSSEEEEEEEE
T ss_pred             CCEEEEEEEEE
Confidence            87655444433

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.19  E-value=1.4e-11  Score=92.30  Aligned_cols=92  Identities=26%  Similarity=0.326  Sum_probs=72.9

Q ss_pred             EEEecCCCCCccCCCCC--CCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCccccccccccccccccccee
Q psy12695         49 TVLCKAKNFTTIPEQLD--VGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ  124 (369)
Q Consensus        49 ~~~c~~~~l~~ip~~~~--~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~  124 (369)
                      .+++++|+++.+|. +.  ..+++|+|++|+|.  +..|.++++|+.|+|++|+|+.++.  |..+++|+.|++++|+|+
T Consensus         2 ~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           2 VLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             EEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCC
T ss_pred             EEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc--cccccccCeEECCCCccC
Confidence            57888999988874 42  46899999999976  3568889999999999999998863  788899999999999998


Q ss_pred             cccC-CcccccCcCcccccc
Q psy12695        125 KITH-EAFINVPKLNLEDFA  143 (369)
Q Consensus       125 ~~~~-~~f~~l~~l~~~~~~  143 (369)
                      .++. ..|..+++|...++.
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~   98 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQ   98 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECT
T ss_pred             CCCCchhhcCCCCCCEEECC
Confidence            8864 567777776554443

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.3e-12  Score=95.62  Aligned_cols=98  Identities=28%  Similarity=0.370  Sum_probs=71.5

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCC-CCeEEEEeCCeEeeecccccccCCcceEEEEee--cceeeEEEcccCCCC-
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSP-VPKIKWIFKEKIIANISSGLANMNKRQYIIKTI--NSLSNLTIVAVTMSD-  221 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p-~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~v~~~D-  221 (369)
                      |+++..+..+.+.+|+.+.|.|.+.|.| .+.+.|++++..+.......+     .......  ...+.|.|.++..+| 
T Consensus         7 Pp~i~~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~-----~~~~~~~~~~~~s~L~I~~v~~~D~   81 (115)
T d2crya1           7 PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRY-----TVETISTEEGVISTLTISNIVRADF   81 (115)
T ss_dssp             SCCEEEECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTE-----EEEEEEETTEEEEEEECTTCCHHHH
T ss_pred             CCEEecCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeE-----eeeeeccccCcEEEEEEeccchhcC
Confidence            3444455677889999999999999865 557999999987754332211     1111111  123579999999999 


Q ss_pred             CEEEEEEEEeCCceEEEEEEEEEeecC
Q psy12695        222 SGIYTCRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       222 ~G~Y~C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      +|.|+|.|.|..|..++.+.|.|...+
T Consensus        82 ~G~Y~C~A~N~~G~~~~~~~L~V~~~~  108 (115)
T d2crya1          82 QTIYNCTAWNSFGSDTEIIRLKEQGSE  108 (115)
T ss_dssp             HSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred             CeEEEEEEEECCCeEEEEEEEEEECCC
Confidence            699999999999999999999887543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.15  E-value=2.2e-11  Score=98.85  Aligned_cols=96  Identities=20%  Similarity=0.262  Sum_probs=84.7

Q ss_pred             CceEEEecCCCCCc-cCCCC---CCCccEEEeeccee---ChhhccCCcccCeeeccCCcccccCCcccccccccccccc
Q psy12695         46 GKETVLCKAKNFTT-IPEQL---DVGTQVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKL  118 (369)
Q Consensus        46 ~~~~~~c~~~~l~~-ip~~~---~~~~~~L~l~~n~i---~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  118 (369)
                      ..+.++.++|.++. ++...   -..++.|+|++|+|   .+++|.++++|++|+|++|+|+.|++++|.++++|+.|+|
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence            35789999999975 55544   25799999999995   4789999999999999999999999999999999999999


Q ss_pred             cccceecccCCcccccCcCcccc
Q psy12695        119 SGNPIQKITHEAFINVPKLNLED  141 (369)
Q Consensus       119 ~~N~l~~~~~~~f~~l~~l~~~~  141 (369)
                      ++|+|+.+++++|..+++|...+
T Consensus       110 ~~N~l~~i~~~~f~~l~~L~~l~  132 (192)
T d1w8aa_         110 YDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCccccccCHHHhcCCccccccc
Confidence            99999999999999988865533

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.15  E-value=2.7e-11  Score=84.04  Aligned_cols=69  Identities=28%  Similarity=0.425  Sum_probs=55.1

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCe-EEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEE
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPK-IKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYT  226 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  226 (369)
                      +...|...++.+|++++|.|.+.|.|.+. +.|++++..+..                   ....|.|.+++.+|+|.|+
T Consensus         8 i~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~l~i~~~~~~d~G~Y~   68 (84)
T d1fnla1           8 VFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS-------------------QASSYFIDAATVNDSGEYR   68 (84)
T ss_dssp             EEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES-------------------SCSEEEESSCCGGGCEEEE
T ss_pred             EEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee-------------------cceeeEecCCcccCCEEEE
Confidence            44457778899999999999999999886 566777755431                   2357999999999999999


Q ss_pred             EEEEeCCce
Q psy12695        227 CRAKNGAGE  235 (369)
Q Consensus       227 C~a~n~~g~  235 (369)
                      |.|.|..++
T Consensus        69 C~a~~s~~S   77 (84)
T d1fnla1          69 CQTNLSTLS   77 (84)
T ss_dssp             EECSSSCCC
T ss_pred             EEccCCCcc
Confidence            999876654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2e-11  Score=96.09  Aligned_cols=97  Identities=18%  Similarity=0.184  Sum_probs=81.8

Q ss_pred             ceEEEecCCCCCccCCCC--CCCccEEEeecceeCh-hhccCCcccCeeeccCCcccccCCcccccccccccccccccce
Q psy12695         47 KETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI  123 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l  123 (369)
                      .+.++.++++++.||...  ...++.|+|++|+|.. ..|.++++|+.|+|++|+|+.++++.|..+++|+.|+|++|.|
T Consensus        20 lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i   99 (162)
T d1a9na_          20 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL   99 (162)
T ss_dssp             CEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred             CcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccceeccccc
Confidence            467999999999998532  3569999999999874 3589999999999999999999999899999999999999999


Q ss_pred             ecccC-CcccccCcCcccccc
Q psy12695        124 QKITH-EAFINVPKLNLEDFA  143 (369)
Q Consensus       124 ~~~~~-~~f~~l~~l~~~~~~  143 (369)
                      +.++. ..|..+++|...++.
T Consensus       100 ~~~~~l~~l~~l~~L~~L~l~  120 (162)
T d1a9na_         100 VELGDLDPLASLKSLTYLCIL  120 (162)
T ss_dssp             CCGGGGGGGGGCTTCCEEECC
T ss_pred             cccccccccccccccchhhcC
Confidence            99875 567777776654443

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.7e-11  Score=84.72  Aligned_cols=79  Identities=27%  Similarity=0.408  Sum_probs=57.7

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCe-EEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPK-IKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |.|...|....+.+|+.++|.|.+.|.|.+. +.|++++..+..                   ....|.|.+++.+|+|.
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~l~i~~v~~~d~G~   62 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-------------------TNSSLNIVNAKFEDSGE   62 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC-------------------CSSEEEECSCCGGGCEE
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeec-------------------ccceeEECCCChhhCCc
Confidence            5666667788899999999999999999886 566777655431                   23479999999999999


Q ss_pred             EEEEEEeCCceEEEEEEEEEe
Q psy12695        225 YTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       225 Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      |.|.|.|..++.  .+.|.|.
T Consensus        63 Y~C~a~~s~~S~--~v~l~V~   81 (82)
T d1f2qa1          63 YKCQHQQVNESE--PVYLEVF   81 (82)
T ss_dssp             EEEECTTSSCCC--CEEEEEE
T ss_pred             EEEEecCCCCcc--cEEEEEE
Confidence            999998866543  4555553

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.11  E-value=3e-11  Score=84.06  Aligned_cols=77  Identities=25%  Similarity=0.431  Sum_probs=59.5

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEE
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYT  226 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  226 (369)
                      +...|....+.+|+.++|.|.+.+.|.+ .+.|++++..+..                   ....|.|.+++.+|+|.|.
T Consensus         7 i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~-------------------~~~~l~i~~v~~~dsG~Y~   67 (85)
T d2fcba1           7 LKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPT-------------------HTQPSYRFKANNNDSGEYT   67 (85)
T ss_dssp             EEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTT-------------------CCSSEEEEECCGGGCEEEE
T ss_pred             EEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccc-------------------cccceEEeeccccCCcEEE
Confidence            4445677889999999999999998877 4888988876532                   2457999999999999999


Q ss_pred             EEEEeCCceEEEEEEEEEe
Q psy12695        227 CRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       227 C~a~n~~g~~~~~~~l~v~  245 (369)
                      |.+.|..++.  .+.|.|.
T Consensus        68 C~a~ns~~S~--~v~l~V~   84 (85)
T d2fcba1          68 CQTGQTSLSD--PVHLTVL   84 (85)
T ss_dssp             EECTTSBCCC--CEEEEEE
T ss_pred             EECCCCcccc--cEEEEEE
Confidence            9998875543  3455553

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=8.8e-11  Score=84.53  Aligned_cols=70  Identities=19%  Similarity=0.253  Sum_probs=55.8

Q ss_pred             eeeccCCeEEEEE------EeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695        155 VTAEENENVTLSC------RATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       155 ~~~~~G~~~~l~C------~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      +.+..|....|.|      .+.|.|.|.|.|++++..+....        .++..    ..+.|.|.++..+|+|.|+|.
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~--------~~~~~----~~~~L~I~~v~~~D~G~Y~C~   76 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDN--------IHFSG----VKDRLIVMNVAEKHRGNYTCH   76 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCS--------SSEEE----ETTEEEESSCCGGGCEEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCC--------cEEEe----cCCEEEEcccccccCcEEEEE
Confidence            5678899999999      66899999999999998875321        12221    235799999999999999999


Q ss_pred             EEeCCceE
Q psy12695        229 AKNGAGEV  236 (369)
Q Consensus       229 a~n~~g~~  236 (369)
                      |.|..|..
T Consensus        77 a~n~~~g~   84 (103)
T d1iray2          77 ASYTYLGK   84 (103)
T ss_dssp             EEEEETTE
T ss_pred             EEECcCCE
Confidence            99987644

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=8.9e-11  Score=84.68  Aligned_cols=88  Identities=13%  Similarity=0.116  Sum_probs=65.1

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeC-CCCC--eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATG-SPVP--KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g-~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      .+...+....+.+|+.++|.|.+.| .|.|  .+.|++++..+.......            ....+.|.|..+..+|.|
T Consensus         6 ~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~------------~~~~s~l~i~~~~~dd~g   73 (103)
T d1iama1           6 RVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVG------------EPAEVTTTVLVRRDHHGA   73 (103)
T ss_dssp             EEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT------------TTEEEEEEEECCSSCSSC
T ss_pred             ceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccccc------------ccceEEEEEeeehhHCCC
Confidence            3444456667889999999999986 5655  478999998775422111            123567999999999999


Q ss_pred             EEEEEEEeCCceEEEEEEEEEee
Q psy12695        224 IYTCRAKNGAGEVFTNISLNVIK  246 (369)
Q Consensus       224 ~Y~C~a~n~~g~~~~~~~l~v~~  246 (369)
                      .|+|.|+|..|.....+.+.+..
T Consensus        74 ~ytC~A~n~~g~~~~~~~~~~s~   96 (103)
T d1iama1          74 QFSCRTELDLRPQGLELFENTSA   96 (103)
T ss_dssp             EEEEEEEEECGGGTSCEEEEECC
T ss_pred             EEEEEEEeCCCCccCeEeeeEcC
Confidence            99999999998876666666543

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.06  E-value=4e-11  Score=87.80  Aligned_cols=88  Identities=24%  Similarity=0.234  Sum_probs=62.0

Q ss_pred             CCeeeccCCeEEEEEEe-eCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE---EEEEE
Q psy12695        153 PDVTAEENENVTLSCRA-TGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG---IYTCR  228 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G---~Y~C~  228 (369)
                      .+.++.+|+.++|.|.+ .|.|.|.+.|++++..+........  ...++.   ....+.|.|.+++..|+|   .|.|.
T Consensus        10 ~~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~--~~~~~~---~~~~~~L~i~~v~~~D~gd~g~Y~C~   84 (111)
T d1biha2          10 HEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTD--FDRRIT---AGPDGNLYFTIVTKEDVSDIYKYVCT   84 (111)
T ss_dssp             EEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCC--CCTTEE---ECTTSCEEEEEECGGGCCSSEEEEEE
T ss_pred             ccccccCCCeEEEEEEcccCCCCCEEEEEeCCcccccccccee--eeeeec---cccccccEEeeeEeeccCCceEEEEE
Confidence            35567899999999997 8999999999998765432221111  111111   123567999999888766   89999


Q ss_pred             EEeCCceEEEEEEEEEe
Q psy12695        229 AKNGAGEVFTNISLNVI  245 (369)
Q Consensus       229 a~n~~g~~~~~~~l~v~  245 (369)
                      |.|..|.....+.+.+.
T Consensus        85 A~N~~g~~~~~~~~~~i  101 (111)
T d1biha2          85 AKNAAVDEEVVLVEYEI  101 (111)
T ss_dssp             EECTTCSSCEEEEEEEE
T ss_pred             EEeCCCCceEEEEEEEe
Confidence            99999987766554443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=2.1e-10  Score=85.76  Aligned_cols=82  Identities=27%  Similarity=0.220  Sum_probs=72.1

Q ss_pred             CceEEEecCCCCCccCCCC--CCCccEEEeecceeCh-hhccCCcccCeeeccCCcccccCC-ccccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPS-HILDSILELRELKLSGN  121 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~~N  121 (369)
                      ..+.++.++|.++.+|..+  ...++.|+|++|+|.. ..|.++++|+.|+|++|+|+.++. ..|..+++|+.|+|++|
T Consensus        21 ~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          21 LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred             CCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCC
Confidence            3578999999999999766  3579999999999874 358999999999999999999875 67889999999999999


Q ss_pred             ceeccc
Q psy12695        122 PIQKIT  127 (369)
Q Consensus       122 ~l~~~~  127 (369)
                      +++.++
T Consensus       101 ~i~~~~  106 (124)
T d1dcea3         101 SLCQEE  106 (124)
T ss_dssp             GGGGSS
T ss_pred             cCCcCc
Confidence            998765

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.2e-10  Score=81.11  Aligned_cols=89  Identities=18%  Similarity=0.199  Sum_probs=60.9

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeeccccccc-CCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        153 PDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLAN-MNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ..+.+..|++++|.|.+ +.|.+.|.|++++..+......... ....+.........+.|.|.+++.+|+|.|.|.+.|
T Consensus         3 ~~v~~~~G~sVtl~c~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             EEEEEETTCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             cEEEEEECCCEEEEecC-CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence            34678899999999986 5688899999988766432221110 111111122234567899999999999999999999


Q ss_pred             CCceEEEEEEEEE
Q psy12695        232 GAGEVFTNISLNV  244 (369)
Q Consensus       232 ~~g~~~~~~~l~v  244 (369)
                      ..+...  +.|+|
T Consensus        82 ~~~t~~--~~l~V   92 (93)
T d1ccza1          82 ITDTMK--FFLYV   92 (93)
T ss_dssp             CCSCEE--EEEEE
T ss_pred             CCcEEE--EEEEE
Confidence            887665  44443

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=2.7e-09  Score=79.85  Aligned_cols=99  Identities=17%  Similarity=0.133  Sum_probs=64.9

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCC---CCeEEEEeCCeEee--ec-c--c---ccccCCcceEEEE---eecceeeEEEcc
Q psy12695        151 ITPDVTAEENENVTLSCRATGSP---VPKIKWIFKEKIIA--NI-S--S---GLANMNKRQYIIK---TINSLSNLTIVA  216 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p---~p~i~W~~~~~~~~--~~-~--~---~~~~~~~~~~~~~---~~~~~~~L~I~~  216 (369)
                      +...+.+.+|++++|.|.+.+..   ...+.|++.+....  .. .  .   .....-..+....   ...+...|.|.+
T Consensus         8 p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   87 (126)
T d1pkoa_           8 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQN   87 (126)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESS
T ss_pred             CCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEE
Confidence            34558899999999999985433   33589998653211  00 0  0   0000011122211   123357899999


Q ss_pred             cCCCCCEEEEEEEEeCCceEEEEEEEEEeecCC
Q psy12695        217 VTMSDSGIYTCRAKNGAGEVFTNISLNVIKVET  249 (369)
Q Consensus       217 v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~~~~~  249 (369)
                      ++.+|+|.|.|.+.+..+.....+.|.|..+..
T Consensus        88 v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~  120 (126)
T d1pkoa_          88 VRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFY  120 (126)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEECTTT
T ss_pred             EchhHCeEEEEEEEECCCEEEEEEEEEEeCCCE
Confidence            999999999999999999998899999987543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=4.1e-10  Score=87.79  Aligned_cols=80  Identities=19%  Similarity=0.241  Sum_probs=68.8

Q ss_pred             ceEEEecCC-CCCccCCCCC---CCccEEEeecce---eChhhccCCcccCeeeccCCcccccCCccccccccccccccc
Q psy12695         47 KETVLCKAK-NFTTIPEQLD---VGTQVLDLSDNF---LDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLS  119 (369)
Q Consensus        47 ~~~~~c~~~-~l~~ip~~~~---~~~~~L~l~~n~---i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  119 (369)
                      .+.+...++ .|+.|+....   ..++.|+|++|+   |.+++|.++++|+.|+|++|+|+.|+++.|..+ .|+.|+|+
T Consensus        33 l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~  111 (156)
T d2ifga3          33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLS  111 (156)
T ss_dssp             CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECC
T ss_pred             cCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-cccccccC
Confidence            467888665 5999986532   479999999999   558899999999999999999999999999877 69999999


Q ss_pred             ccceeccc
Q psy12695        120 GNPIQKIT  127 (369)
Q Consensus       120 ~N~l~~~~  127 (369)
                      +|++.+-.
T Consensus       112 ~Np~~C~C  119 (156)
T d2ifga3         112 GNPLHCSC  119 (156)
T ss_dssp             SSCCCCCG
T ss_pred             CCcccCCc
Confidence            99997644

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=4.8e-10  Score=96.64  Aligned_cols=90  Identities=22%  Similarity=0.262  Sum_probs=50.5

Q ss_pred             eEEEecCCCCCccCCCCC---CCccEEEeeccee---ChhhccCCcccCeeeccCCcccccCCccccccccccccccccc
Q psy12695         48 ETVLCKAKNFTTIPEQLD---VGTQVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGN  121 (369)
Q Consensus        48 ~~~~c~~~~l~~ip~~~~---~~~~~L~l~~n~i---~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N  121 (369)
                      ..+++.++.|+.+|....   ..++.|+|++|+|   .+.+|.++++|+.|+|++|+++.+.+..|.++++|+.|++++|
T Consensus       132 ~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N  211 (284)
T d1ozna_         132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN  211 (284)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             chhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccc
Confidence            455555555655554332   2355566666553   3455666666666666666666655555666666666666666


Q ss_pred             ceecccCCcccccCcC
Q psy12695        122 PIQKITHEAFINVPKL  137 (369)
Q Consensus       122 ~l~~~~~~~f~~l~~l  137 (369)
                      ++..+++..|..++.|
T Consensus       212 ~i~~~~~~~~~~~~~L  227 (284)
T d1ozna_         212 NLSALPTEALAPLRAL  227 (284)
T ss_dssp             CCSCCCHHHHTTCTTC
T ss_pred             cccccccccccccccc
Confidence            6666555555554443

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=5.9e-10  Score=80.76  Aligned_cols=86  Identities=13%  Similarity=0.070  Sum_probs=58.6

Q ss_pred             CCCeeeccCCeEEEEEEeeC-CC--CCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695        152 TPDVTAEENENVTLSCRATG-SP--VPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g-~p--~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      +....+.+|+.++|.|.+.| .|  .+.|.|++++..+............       ....+.|.|.....+|.|.|+|.
T Consensus         9 ~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~-------~~~~s~l~~~~~~~d~g~~ytC~   81 (106)
T d1zxqa1           9 LQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAP-------QEATATFNSTADREDGHRNFSCL   81 (106)
T ss_dssp             EESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCT-------TCEEEEEEEECCGGGGGCEEEEE
T ss_pred             CCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecc-------cceeEEEEEeeehhcCCcEEEEE
Confidence            34456889999999999987 44  4579999999887643322211111       11234677777778888899999


Q ss_pred             EEeCCceEEEEEEEEE
Q psy12695        229 AKNGAGEVFTNISLNV  244 (369)
Q Consensus       229 a~n~~g~~~~~~~l~v  244 (369)
                      |.|..|.....+.+.+
T Consensus        82 A~n~~~~~~~~~~~~~   97 (106)
T d1zxqa1          82 AVLDLMSRGGNIFHKH   97 (106)
T ss_dssp             EEEECGGGTCCEEEEE
T ss_pred             EEecCCCCCCeeEecc
Confidence            9998876544444444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.7e-09  Score=92.15  Aligned_cols=59  Identities=24%  Similarity=0.342  Sum_probs=33.3

Q ss_pred             hhccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCcccccCcCcc
Q psy12695         81 YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNL  139 (369)
Q Consensus        81 ~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~  139 (369)
                      ..|..+.+|+.|++++|.|+.+++..|.++++|+.|++++|.|+.++++.|..+++|..
T Consensus       118 ~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~  176 (266)
T d1p9ag_         118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT  176 (266)
T ss_dssp             STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred             cccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccce
Confidence            34444555555555555555555555555666666666666666666655555555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=7.5e-10  Score=86.85  Aligned_cols=76  Identities=21%  Similarity=0.166  Sum_probs=65.9

Q ss_pred             CCCccEEEeecceeC--hhhccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCcccccCcCccccc
Q psy12695         65 DVGTQVLDLSDNFLD--RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNLEDF  142 (369)
Q Consensus        65 ~~~~~~L~l~~n~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~  142 (369)
                      +..++.|+|++|+|.  ++.|.++++|+.|||++|+|+.++  .|..+++|+.|+|++|.|+.++++.|..++++...++
T Consensus        17 ~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            346899999999977  467789999999999999999995  4899999999999999999999988888877665444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.83  E-value=2.8e-09  Score=92.63  Aligned_cols=96  Identities=28%  Similarity=0.356  Sum_probs=83.8

Q ss_pred             ceEEEecCCCCCccCCCCCCCccEEEeeccee---ChhhccCCcccCeeeccCCcccccCCcccccccccccccccccce
Q psy12695         47 KETVLCKAKNFTTIPEQLDVGTQVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI  123 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i---~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l  123 (369)
                      .+.+++.++++..+|..++.+++.|+|++|.+   .+.+|.+++.++.|++++|.|+.+++..|.++++|++|+|++|.|
T Consensus       152 L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L  231 (305)
T d1xkua_         152 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL  231 (305)
T ss_dssp             CCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred             cCccccccCCccccCcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccc
Confidence            46799999999999999999999999999994   467899999999999999999999999999999999999999999


Q ss_pred             ecccCCcccccCcCcccccc
Q psy12695        124 QKITHEAFINVPKLNLEDFA  143 (369)
Q Consensus       124 ~~~~~~~f~~l~~l~~~~~~  143 (369)
                      +.++. .|..+++|...++.
T Consensus       232 ~~lp~-~l~~l~~L~~L~Ls  250 (305)
T d1xkua_         232 VKVPG-GLADHKYIQVVYLH  250 (305)
T ss_dssp             SSCCT-TTTTCSSCCEEECC
T ss_pred             ccccc-ccccccCCCEEECC
Confidence            99864 67778877665554

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.80  E-value=1.8e-08  Score=72.67  Aligned_cols=84  Identities=13%  Similarity=0.305  Sum_probs=60.8

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC-----eEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +.|..+++.+|++++|.|...+.....+.||++.     ..+.............+|..........|.|.+++.+|+|.
T Consensus         6 QsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d1ospl1           6 QSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVAT   85 (107)
T ss_dssp             CCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSE
T ss_pred             eeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCc
Confidence            4577899999999999999877666679999842     12222222222334556776666667899999999999999


Q ss_pred             EEEEEEeCC
Q psy12695        225 YTCRAKNGA  233 (369)
Q Consensus       225 Y~C~a~n~~  233 (369)
                      |.|.+....
T Consensus        86 YyCa~~~~~   94 (107)
T d1ospl1          86 YFCQQYWSP   94 (107)
T ss_dssp             EEEEECSSS
T ss_pred             EEEeeccCC
Confidence            999876443

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.79  E-value=1.4e-08  Score=73.12  Aligned_cols=83  Identities=17%  Similarity=0.213  Sum_probs=58.4

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--eE---eeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--KI---IANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +.|..+.+.+|++++|.|.........+.|+++.  ..   +.............++..........|.|.+++.+|+|.
T Consensus         5 QsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~   84 (106)
T d1a0ql1           5 QSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIAT   84 (106)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSE
T ss_pred             CcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEe
Confidence            4467888999999999999877666679999842  11   111111111222345666666677899999999999999


Q ss_pred             EEEEEEeC
Q psy12695        225 YTCRAKNG  232 (369)
Q Consensus       225 Y~C~a~n~  232 (369)
                      |.|.+...
T Consensus        85 YyCa~~~~   92 (106)
T d1a0ql1          85 YYCLQYYN   92 (106)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEeCC
Confidence            99987543

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=1.1e-08  Score=72.73  Aligned_cols=89  Identities=16%  Similarity=0.276  Sum_probs=61.3

Q ss_pred             CeeeccCCeEEEEEEee-C-CCCCeEEEEeCCeEeeecccccc-cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        154 DVTAEENENVTLSCRAT-G-SPVPKIKWIFKEKIIANISSGLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~-g-~p~p~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      .+....|++|+|.|... . .....|.|++++..+........ .....++..   ..++.|.|.+++.+|+|.|.|.+.
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~---~~ngSL~I~nl~~~DsG~Y~c~v~   80 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEI---LANGDLKIKNLTRDDSGTYNVTVY   80 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEE---CTTSCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEE---CCCccEEEeCCCHHHCEEEEEEEE
Confidence            35678899999999642 2 22346999999877654322211 111122222   245689999999999999999999


Q ss_pred             eCCceE--EEEEEEEEe
Q psy12695        231 NGAGEV--FTNISLNVI  245 (369)
Q Consensus       231 n~~g~~--~~~~~l~v~  245 (369)
                      +..|..  ...+.|.|.
T Consensus        81 ~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          81 STNGTRILNKALDLRIL   97 (98)
T ss_dssp             ETTCCEEEEEEEEEEEE
T ss_pred             eCCCCEEEEEEEEEEEE
Confidence            998875  566777775

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=8.3e-09  Score=76.75  Aligned_cols=98  Identities=21%  Similarity=0.332  Sum_probs=62.9

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCC----eEEEEeCCeE-------eee-cccccc----cCCcceEEEE---eecc
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVP----KIKWIFKEKI-------IAN-ISSGLA----NMNKRQYIIK---TINS  208 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p----~i~W~~~~~~-------~~~-~~~~~~----~~~~~~~~~~---~~~~  208 (369)
                      +..+...+.+.+|++++|.|.+.+.+.+    .+.|++....       +.. ......    ..-..+....   ...+
T Consensus         7 Vt~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   86 (124)
T d1eaja_           7 ITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSG   86 (124)
T ss_dssp             ESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGT
T ss_pred             EEccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCC
Confidence            3444455788999999999998754432    4889873210       110 000000    0111122221   1223


Q ss_pred             eeeEEEcccCCCCCEEEEEEEEeCCceEEEEEEEEEe
Q psy12695        209 LSNLTIVAVTMSDSGIYTCRAKNGAGEVFTNISLNVI  245 (369)
Q Consensus       209 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~v~  245 (369)
                      ...|+|.+++.+|+|.|.|.+.+..|.....+.|.|.
T Consensus        87 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          87 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            4689999999999999999999999988888888875

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.78  E-value=1.7e-08  Score=72.57  Aligned_cols=83  Identities=14%  Similarity=0.195  Sum_probs=58.7

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeC--CeE---eeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFK--EKI---IANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +.|..+.+.+|++++|.|...+.....+.||++  ++.   +.............+|..........|.|.+++.+|+|.
T Consensus         6 QsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~   85 (106)
T d1i8ka_           6 QSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGD   85 (106)
T ss_dssp             EECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEE
Confidence            446778899999999999987666667999974  221   111111112223446666666667889999999999999


Q ss_pred             EEEEEEeC
Q psy12695        225 YTCRAKNG  232 (369)
Q Consensus       225 Y~C~a~n~  232 (369)
                      |.|.+.+.
T Consensus        86 YyCa~~~~   93 (106)
T d1i8ka_          86 YYCLQSFN   93 (106)
T ss_dssp             EEEEECSS
T ss_pred             EeEecCcc
Confidence            99986543

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.77  E-value=2.3e-08  Score=72.10  Aligned_cols=83  Identities=20%  Similarity=0.338  Sum_probs=60.0

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +.|..+.+.+|++++|.|.........+.|+++.  +   .+.............++..........|.|.+++.+|+|.
T Consensus         6 Q~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d1j1pl_           6 QSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGM   85 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEE
Confidence            4467889999999999999876666679999843  1   1111111122233456777777777899999999999999


Q ss_pred             EEEEEEeC
Q psy12695        225 YTCRAKNG  232 (369)
Q Consensus       225 Y~C~a~n~  232 (369)
                      |.|.+.+.
T Consensus        86 YyCa~~~~   93 (107)
T d1j1pl_          86 YFCQQANS   93 (107)
T ss_dssp             EEEEECSS
T ss_pred             EEEEcCCC
Confidence            99986544

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.77  E-value=3.6e-08  Score=71.13  Aligned_cols=83  Identities=18%  Similarity=0.230  Sum_probs=59.3

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +.|..+.+.+|++++|.|...+.....+.||++.  .   .+.............++..........|.|.+++.+|+|.
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~   85 (107)
T d1kcvl1           6 QSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDAD   85 (107)
T ss_dssp             ESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCce
Confidence            4577889999999999999877766789999742  1   1211111111222345666666677899999999999999


Q ss_pred             EEEEEEeC
Q psy12695        225 YTCRAKNG  232 (369)
Q Consensus       225 Y~C~a~n~  232 (369)
                      |.|.+...
T Consensus        86 YyCa~~~~   93 (107)
T d1kcvl1          86 YYCGQSYS   93 (107)
T ss_dssp             EEEEECSS
T ss_pred             EEEEecCC
Confidence            99987543

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.76  E-value=2.2e-08  Score=71.99  Aligned_cols=83  Identities=18%  Similarity=0.270  Sum_probs=58.3

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeC--CeE---eeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFK--EKI---IANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +.|..+.+.+|++++|.|.........+.|+++  ++.   +.............++..........|.|.+++.+|+|.
T Consensus         6 Q~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~   85 (107)
T d1c5cl1           6 QSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFAD   85 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeE
Confidence            456778899999999999987776667999973  222   222222222223334555555667799999999999999


Q ss_pred             EEEEEEeC
Q psy12695        225 YTCRAKNG  232 (369)
Q Consensus       225 Y~C~a~n~  232 (369)
                      |.|.+.+.
T Consensus        86 YyCa~~~~   93 (107)
T d1c5cl1          86 YYCLQYAS   93 (107)
T ss_dssp             EEEEECSS
T ss_pred             EEEecCcC
Confidence            99987543

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.74  E-value=4.7e-08  Score=70.34  Aligned_cols=83  Identities=16%  Similarity=0.202  Sum_probs=58.9

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +.|..+.+.+|++++|.|.........+.||++.  +   .+.............+|..........|.|.+++.+|+|+
T Consensus         6 Q~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~   85 (107)
T d1mexl1           6 QSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAE   85 (107)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             cCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheeccee
Confidence            4567788999999999999876656679999742  1   1221111111223446666666677899999999999999


Q ss_pred             EEEEEEeC
Q psy12695        225 YTCRAKNG  232 (369)
Q Consensus       225 Y~C~a~n~  232 (369)
                      |.|.+...
T Consensus        86 YyCa~~~~   93 (107)
T d1mexl1          86 YFCQQYNS   93 (107)
T ss_dssp             EEEEECSS
T ss_pred             EEEeECCC
Confidence            99986543

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.73  E-value=3.3e-08  Score=71.24  Aligned_cols=84  Identities=17%  Similarity=0.282  Sum_probs=59.5

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC-----eEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        149 RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      .+.|..+.+.+|++++|.|.........+.|+++.     ..+.............++..........|.|.+++.+|+|
T Consensus         5 tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA   84 (107)
T d1tjgl1           5 TQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFA   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             EeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCc
Confidence            34578899999999999999976666789999843     1222222222222334566666667789999999999999


Q ss_pred             EEEEEEEeC
Q psy12695        224 IYTCRAKNG  232 (369)
Q Consensus       224 ~Y~C~a~n~  232 (369)
                      .|.|.+.+.
T Consensus        85 ~YyCa~~~~   93 (107)
T d1tjgl1          85 TYYCQQLHF   93 (107)
T ss_dssp             EEEEEECSB
T ss_pred             eEEEEECcC
Confidence            999976543

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.73  E-value=5.2e-08  Score=69.71  Aligned_cols=82  Identities=18%  Similarity=0.332  Sum_probs=57.9

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--eE---eeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEE
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKE--KI---IANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYT  226 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  226 (369)
                      |..+++.+|++++|.|...+.....+.||++.  ..   +.............++..........|.|.+++.+|+|.|.
T Consensus         5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   84 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYY   84 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEE
Confidence            44788999999999999876666679999843  11   11111112222334566666667789999999999999999


Q ss_pred             EEEEeCC
Q psy12695        227 CRAKNGA  233 (369)
Q Consensus       227 C~a~n~~  233 (369)
                      |.+....
T Consensus        85 CA~~~~~   91 (103)
T d8faba1          85 CQAWDNS   91 (103)
T ss_dssp             EEEEETT
T ss_pred             eeecCCC
Confidence            9876544

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.70  E-value=7.9e-08  Score=69.04  Aligned_cols=83  Identities=20%  Similarity=0.337  Sum_probs=59.2

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC-----eEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +.|..+.+.+|++++|.|...+.....+.||++.     +.+.............+|..........|.|.+++.+|+|.
T Consensus         5 Q~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   84 (106)
T d1op3k1           5 QSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFAT   84 (106)
T ss_dssp             EECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSE
T ss_pred             CcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCc
Confidence            3467889999999999999876666679999853     22222222111222346666666677889999999999999


Q ss_pred             EEEEEEeC
Q psy12695        225 YTCRAKNG  232 (369)
Q Consensus       225 Y~C~a~n~  232 (369)
                      |.|.+...
T Consensus        85 YyCa~~~~   92 (106)
T d1op3k1          85 YHCQHYAG   92 (106)
T ss_dssp             EEEEEECS
T ss_pred             EeeeeCCC
Confidence            99987643

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=9.3e-08  Score=68.71  Aligned_cols=80  Identities=26%  Similarity=0.424  Sum_probs=57.3

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC-----eEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEE
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYT  226 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  226 (369)
                      |..+.+.+|++++|.|...+.....+.|+++.     ..+.............+|..........|.|.+++.+|+|.|.
T Consensus         7 p~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   86 (106)
T d1lk3l1           7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (106)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcc
Confidence            45688999999999999987666779999742     1122221111122344676666677789999999999999999


Q ss_pred             EEEEe
Q psy12695        227 CRAKN  231 (369)
Q Consensus       227 C~a~n  231 (369)
                      |.+..
T Consensus        87 Ca~~~   91 (106)
T d1lk3l1          87 CQQSW   91 (106)
T ss_dssp             EEECS
T ss_pred             ccccc
Confidence            97643

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.68  E-value=7.9e-08  Score=69.48  Aligned_cols=82  Identities=17%  Similarity=0.306  Sum_probs=58.8

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC-----eEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +.|..+.+.+|++++|.|...+.....+.||++.     +.+.............+|..........|.|.+++.+|+|.
T Consensus         8 QsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~   87 (109)
T d1bwwa_           8 QSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIAT   87 (109)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCce
Confidence            4467788999999999999977666679999842     12222222222223446666666667789999999999999


Q ss_pred             EEEEEEe
Q psy12695        225 YTCRAKN  231 (369)
Q Consensus       225 Y~C~a~n  231 (369)
                      |.|.+..
T Consensus        88 YyCA~~~   94 (109)
T d1bwwa_          88 YYCQQYQ   94 (109)
T ss_dssp             EEEEECS
T ss_pred             EEEeecC
Confidence            9998754

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.67  E-value=9e-08  Score=68.87  Aligned_cols=83  Identities=20%  Similarity=0.313  Sum_probs=58.7

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC-----eEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +.|..+.+.+|++++|.|.........+.|+++.     ..+.............+|..........|.|.+++.+|+|.
T Consensus         6 Q~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d1d5il1           6 QSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGI   85 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEE
Confidence            4467788999999999999877667779999742     11222111111223346666666677899999999999999


Q ss_pred             EEEEEEeC
Q psy12695        225 YTCRAKNG  232 (369)
Q Consensus       225 Y~C~a~n~  232 (369)
                      |.|.....
T Consensus        86 YyCa~~~~   93 (107)
T d1d5il1          86 YYCLQYDE   93 (107)
T ss_dssp             EEEEECSS
T ss_pred             EEeeeccC
Confidence            99986543

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.67  E-value=1e-07  Score=68.60  Aligned_cols=84  Identities=21%  Similarity=0.317  Sum_probs=56.8

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +.|..+.+.+|++++|.|...+.....+.||++.  +   .+..............+..........|.|.+++.+|+|.
T Consensus         6 Q~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~   85 (108)
T d1jhll_           6 QSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAM   85 (108)
T ss_dssp             EECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSE
T ss_pred             ccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceE
Confidence            4467788999999999999977666679999842  1   1111111111112233444445556789999999999999


Q ss_pred             EEEEEEeCC
Q psy12695        225 YTCRAKNGA  233 (369)
Q Consensus       225 Y~C~a~n~~  233 (369)
                      |.|.+.+..
T Consensus        86 YyCA~~~~~   94 (108)
T d1jhll_          86 YICQQHNEY   94 (108)
T ss_dssp             EEEEECSSS
T ss_pred             EEEeeCCCc
Confidence            999866543

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.63  E-value=5.6e-08  Score=71.25  Aligned_cols=82  Identities=20%  Similarity=0.273  Sum_probs=57.5

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC-----eEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +.|..+.+.+|++++|.|...+.....+.||++.     ..+.............++..........|.|.+++.+|+|.
T Consensus         6 Q~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsav   85 (119)
T d1f3rb2           6 QSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVAT   85 (119)
T ss_dssp             EETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSE
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeE
Confidence            4467788999999999999876656679999842     12222222111222345655555666789999999999999


Q ss_pred             EEEEEEe
Q psy12695        225 YTCRAKN  231 (369)
Q Consensus       225 Y~C~a~n  231 (369)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (119)
T d1f3rb2          86 YFCYQYN   92 (119)
T ss_dssp             EEEEEES
T ss_pred             EEeeccC
Confidence            9998764

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.62  E-value=3.3e-07  Score=66.46  Aligned_cols=81  Identities=17%  Similarity=0.329  Sum_probs=56.3

Q ss_pred             CCCeeeccCCeEEEEEEeeCCC--CCeEEEEeCCe-----EeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        152 TPDVTAEENENVTLSCRATGSP--VPKIKWIFKEK-----IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +..+.+.+|++++|.|.+.+..  ...+.||++..     .+.............++..........|.|.+++.+|+|.
T Consensus         7 ~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~   86 (114)
T d2rhea_           7 PPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEAD   86 (114)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCce
Confidence            4468899999999999987643  45699998531     1222222222222345555556677899999999999999


Q ss_pred             EEEEEEeC
Q psy12695        225 YTCRAKNG  232 (369)
Q Consensus       225 Y~C~a~n~  232 (369)
                      |.|.+...
T Consensus        87 YyCA~~~~   94 (114)
T d2rhea_          87 YYCAAWND   94 (114)
T ss_dssp             EEEEEEET
T ss_pred             EEEeecCC
Confidence            99998643

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.62  E-value=3.4e-08  Score=85.92  Aligned_cols=95  Identities=21%  Similarity=0.185  Sum_probs=73.7

Q ss_pred             eEEEecCCCCC---ccCCCCC--CCccEEEeec-ceeC---hhhccCCcccCeeeccCCcccccCCcccccccccccccc
Q psy12695         48 ETVLCKAKNFT---TIPEQLD--VGTQVLDLSD-NFLD---RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKL  118 (369)
Q Consensus        48 ~~~~c~~~~l~---~ip~~~~--~~~~~L~l~~-n~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L  118 (369)
                      +.++.+++++.   .+|..+.  ..+++|+|++ |++.   +.+|.+|++|++|+|++|+|..+++..|..+.+|+.+++
T Consensus        53 ~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l  132 (313)
T d1ogqa_          53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF  132 (313)
T ss_dssp             EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC
T ss_pred             EEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccccc
Confidence            45777777776   4777663  5788889986 6653   467888889999999999988888888888888899999


Q ss_pred             cccceecccCCcccccCcCccccc
Q psy12695        119 SGNPIQKITHEAFINVPKLNLEDF  142 (369)
Q Consensus       119 ~~N~l~~~~~~~f~~l~~l~~~~~  142 (369)
                      ++|.+....+..|.+++.+...++
T Consensus       133 ~~N~~~~~~p~~l~~l~~L~~l~l  156 (313)
T d1ogqa_         133 SYNALSGTLPPSISSLPNLVGITF  156 (313)
T ss_dssp             CSSEEESCCCGGGGGCTTCCEEEC
T ss_pred             ccccccccCchhhccCcccceeec
Confidence            888888877777887777665443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=3.4e-08  Score=82.51  Aligned_cols=96  Identities=17%  Similarity=0.107  Sum_probs=76.2

Q ss_pred             ceEEEecCCCCCccCCC----CCCCccEEEeeccee---ChhhccCCcccCeeeccCCcccccCCccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQ----LDVGTQVLDLSDNFL---DRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLS  119 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~----~~~~~~~L~l~~n~i---~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  119 (369)
                      .....+.++.+..++..    ++..++.|++++|+|   ...+|.....++.+++++|+|+.|+.++|.++++|+.|+|+
T Consensus       130 l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls  209 (242)
T d1xwdc1         130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS  209 (242)
T ss_dssp             EEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECT
T ss_pred             cccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECC
Confidence            34566667777777654    345688899999985   46677766556666789999999999999999999999999


Q ss_pred             ccceecccCCcccccCcCccccc
Q psy12695        120 GNPIQKITHEAFINVPKLNLEDF  142 (369)
Q Consensus       120 ~N~l~~~~~~~f~~l~~l~~~~~  142 (369)
                      +|+|+.++...|.+++.|...++
T Consensus       210 ~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         210 RTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             TSCCCCCCSSSCTTCCEEESSSE
T ss_pred             CCcCCccCHHHHcCCcccccCcC
Confidence            99999999999999888765443

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.60  E-value=9.4e-08  Score=69.63  Aligned_cols=86  Identities=23%  Similarity=0.378  Sum_probs=57.2

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--eE---eeeccccc--ccCCcceEEEEeecceeeEEEcccCCC
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--KI---IANISSGL--ANMNKRQYIIKTINSLSNLTIVAVTMS  220 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~L~I~~v~~~  220 (369)
                      +...|..+.+.+|+.++|.|...+.....+.|+++.  +.   +.......  ...+..............|.|.+++.+
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   82 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG   82 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCC
Confidence            345677899999999999999987766779999832  21   11111111  111122222333345668999999999


Q ss_pred             CCEEEEEEEEeCC
Q psy12695        221 DSGIYTCRAKNGA  233 (369)
Q Consensus       221 D~G~Y~C~a~n~~  233 (369)
                      |+|.|.|.+....
T Consensus        83 Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          83 DSATYLCAVRPTS   95 (113)
T ss_dssp             GCEEEEEEEEESS
T ss_pred             CCcEEeEeEecCC
Confidence            9999999987544

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.59  E-value=1.4e-07  Score=67.97  Aligned_cols=81  Identities=20%  Similarity=0.314  Sum_probs=58.3

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +.|..+.+.+|++++|.|.........+.||++.  +   .+.............+|..........|.|.+++.+|+|.
T Consensus         6 QsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~   85 (109)
T d1mqkl_           6 QTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGS   85 (109)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCee
Confidence            3467888999999999999876666679999832  1   1222222222223346666666777899999999999999


Q ss_pred             EEEEEE
Q psy12695        225 YTCRAK  230 (369)
Q Consensus       225 Y~C~a~  230 (369)
                      |.|.+.
T Consensus        86 YyCA~~   91 (109)
T d1mqkl_          86 YYCQHH   91 (109)
T ss_dssp             EEEEEC
T ss_pred             EEEeee
Confidence            999875

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.1e-07  Score=69.70  Aligned_cols=98  Identities=15%  Similarity=0.234  Sum_probs=61.2

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCC---CCeEEEEeCCe-----Eeeecccccc--cCCcceEEEEeecceeeEEEcccCCC
Q psy12695        151 ITPDVTAEENENVTLSCRATGSP---VPKIKWIFKEK-----IIANISSGLA--NMNKRQYIIKTINSLSNLTIVAVTMS  220 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p---~p~i~W~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~I~~v~~~  220 (369)
                      .|..+.+.+|++++|.|...+..   ...+.|++...     .+........  ..++.............|.|.+++.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            56788999999999999875322   23578987432     1111111111  11111222233445578999999999


Q ss_pred             CCEEEEEEEEeCCceEEEEEEEEEeecC
Q psy12695        221 DSGIYTCRAKNGAGEVFTNISLNVIKVE  248 (369)
Q Consensus       221 D~G~Y~C~a~n~~g~~~~~~~l~v~~~~  248 (369)
                      |+|.|.|.+..........+.|.|....
T Consensus        85 DsG~Y~C~v~~~~~~~~~~v~L~V~~~~  112 (116)
T d1xeda_          85 DSGRYKCGLGINSRGLSFDVSLEVLEHH  112 (116)
T ss_dssp             GCEEEEEEESCGGGCCEEEEEEEEECCC
T ss_pred             CCEEEEEEEEcCCCCceEeEEEEEECCC
Confidence            9999999986554444556788887654

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.58  E-value=6.3e-08  Score=69.70  Aligned_cols=82  Identities=20%  Similarity=0.250  Sum_probs=56.6

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--eE---eeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--KI---IANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +.|..+.+.+|++++|.|...+.....+.||++.  +.   +.............+|..........|.|.+++.+|+|.
T Consensus         6 QsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d3cx5k1           6 QTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIAT   85 (107)
T ss_dssp             EESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSE
T ss_pred             CcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCc
Confidence            4467888999999999999877766679999743  11   111111111122334444455567799999999999999


Q ss_pred             EEEEEEe
Q psy12695        225 YTCRAKN  231 (369)
Q Consensus       225 Y~C~a~n  231 (369)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (107)
T d3cx5k1          86 YFCQHHI   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEeeeCC
Confidence            9997643

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.57  E-value=2.1e-07  Score=67.07  Aligned_cols=83  Identities=20%  Similarity=0.254  Sum_probs=57.0

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCC-CCCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        150 PITPDVTAEENENVTLSCRATGS-PVPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      +.|..+.+.+|++++|.|...+. ....+.|+++.  .   .+.............++..........|.|.+++.+|+|
T Consensus         6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa   85 (108)
T d2fx7l1           6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFA   85 (108)
T ss_dssp             CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             eeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccE
Confidence            45678889999999999987654 34468999843  2   222222212122334566655666778999999999999


Q ss_pred             EEEEEEEeC
Q psy12695        224 IYTCRAKNG  232 (369)
Q Consensus       224 ~Y~C~a~n~  232 (369)
                      .|.|.+.+.
T Consensus        86 ~YyCa~~~~   94 (108)
T d2fx7l1          86 VYYCQQYGQ   94 (108)
T ss_dssp             EEEEEECSS
T ss_pred             EEeeecCCC
Confidence            999987543

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=1e-07  Score=70.43  Aligned_cols=86  Identities=21%  Similarity=0.375  Sum_probs=58.8

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeC--CeE------eeeccc--cc--c--c-CCcceEEEEee-cce
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFK--EKI------IANISS--GL--A--N-MNKRQYIIKTI-NSL  209 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~------~~~~~~--~~--~--~-~~~~~~~~~~~-~~~  209 (369)
                      |.+...|..+.+.+|++++|.|.+.+...+.+.|++.  ++.      +.....  ..  .  . ....++..... ...
T Consensus         2 ~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~   81 (122)
T d1nezg_           2 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNK   81 (122)
T ss_dssp             CEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTE
T ss_pred             CceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCE
Confidence            5667778999999999999999998887888999973  221      111111  00  0  1 11234443322 334


Q ss_pred             eeEEEcccCCCCCEEEEEEEEe
Q psy12695        210 SNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       210 ~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ..|+|.+++.+|+|.|.|.+..
T Consensus        82 ~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          82 YVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEE
T ss_pred             eEEEEcccccCCCEEEEeeEeC
Confidence            5799999999999999998764

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.57  E-value=1.5e-07  Score=68.05  Aligned_cols=81  Identities=17%  Similarity=0.265  Sum_probs=54.2

Q ss_pred             CCCeeeccCCeEEEEEEeeCC-CCCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        152 TPDVTAEENENVTLSCRATGS-PVPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |..+.+.+|++++|.|...+. ....+.||++.  +   .+.............++..........|.|.+++.+|+|.|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            567899999999999997653 34568999842  2   12221111112223344444445667899999999999999


Q ss_pred             EEEEEeC
Q psy12695        226 TCRAKNG  232 (369)
Q Consensus       226 ~C~a~n~  232 (369)
                      .|.+...
T Consensus        85 yCa~~~~   91 (110)
T d2esvd1          85 YCIVVRS   91 (110)
T ss_dssp             EEEEEES
T ss_pred             EEEEeCC
Confidence            9987543

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=2.4e-07  Score=66.74  Aligned_cols=82  Identities=22%  Similarity=0.360  Sum_probs=56.7

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCC---CeEEEEeC--CeE---eeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        152 TPDVTAEENENVTLSCRATGSPV---PKIKWIFK--EKI---IANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~---p~i~W~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      +..+.+.+|++++|.|..++...   -.+.|+++  ++.   +.............+|..........|.|.+++.+|+|
T Consensus         7 ~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa   86 (110)
T d1oaql_           7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEA   86 (110)
T ss_dssp             CSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCE
T ss_pred             CCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccE
Confidence            34688999999999999975332   23899973  222   22222222223345677666777889999999999999


Q ss_pred             EEEEEEEeCC
Q psy12695        224 IYTCRAKNGA  233 (369)
Q Consensus       224 ~Y~C~a~n~~  233 (369)
                      .|.|.+....
T Consensus        87 ~YyCa~~~~~   96 (110)
T d1oaql_          87 IYFCALWYSN   96 (110)
T ss_dssp             EEEEEEEETT
T ss_pred             eEEEEcccCC
Confidence            9999976543

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.54  E-value=3e-07  Score=66.43  Aligned_cols=84  Identities=17%  Similarity=0.222  Sum_probs=56.2

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCC-C---CCeEEEEeCC--eE---eeecccccccCCcceEEEEeecceeeEEEcccCCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGS-P---VPKIKWIFKE--KI---IANISSGLANMNKRQYIIKTINSLSNLTIVAVTMS  220 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~-p---~p~i~W~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~  220 (369)
                      +.|..+.+.+|++++|.|..++. .   ...+.||++.  ..   +.............+|..........|.|.+++.+
T Consensus         6 QsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~   85 (111)
T d2gsia1           6 QSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEE   85 (111)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhccccccccc
Confidence            44677889999999999987542 1   2348999842  21   12211111112234666666667789999999999


Q ss_pred             CCEEEEEEEEeCC
Q psy12695        221 DSGIYTCRAKNGA  233 (369)
Q Consensus       221 D~G~Y~C~a~n~~  233 (369)
                      |+|.|.|.+....
T Consensus        86 DsA~YyCa~~~~~   98 (111)
T d2gsia1          86 DAATYYCSHIREL   98 (111)
T ss_dssp             GCEEEEEEECSSS
T ss_pred             CCceEEEEECCCC
Confidence            9999999875443

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.7e-07  Score=68.35  Aligned_cols=85  Identities=22%  Similarity=0.388  Sum_probs=58.9

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCC-CCCeEEEEeCCe------E-eeeccccc----ccCCcceEEEEeecceeeEEEc
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGS-PVPKIKWIFKEK------I-IANISSGL----ANMNKRQYIIKTINSLSNLTIV  215 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~~------~-~~~~~~~~----~~~~~~~~~~~~~~~~~~L~I~  215 (369)
                      +...|..+++.+|++++|.|.+.+. ....+.|++...      . +.......    ......++..........|.|.
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~   82 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLS   82 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEES
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEc
Confidence            3455788899999999999998654 345699998431      1 11111111    1223456766666667889999


Q ss_pred             ccCCCCCEEEEEEEEeC
Q psy12695        216 AVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n~  232 (369)
                      +++.+|+|.|.|.+...
T Consensus        83 ~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          83 DFRRENEGYYFCSALSN   99 (114)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             cCCCCCCEEEeEeEcCC
Confidence            99999999999998654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.53  E-value=5.6e-08  Score=80.36  Aligned_cols=90  Identities=20%  Similarity=0.247  Sum_probs=67.9

Q ss_pred             eEEEecCCCCCccCC-CCCCCccEEEeecceeC-hhhccCCcccCeeeccCCcccccCCcccccccccccccccccceec
Q psy12695         48 ETVLCKAKNFTTIPE-QLDVGTQVLDLSDNFLD-RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQK  125 (369)
Q Consensus        48 ~~~~c~~~~l~~ip~-~~~~~~~~L~l~~n~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~  125 (369)
                      ..+.+.+..+...+. .-...++.|++++|.+. ...|.++++|+.|||++|+|+.+++  |..+++|++|+|++|+|+.
T Consensus       132 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB
T ss_pred             hhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCCChh--hcCCCCCCEEECcCCcCCC
Confidence            345555555554332 22456899999999976 4568899999999999999998865  7889999999999999998


Q ss_pred             ccCCcccccCcCcccc
Q psy12695        126 ITHEAFINVPKLNLED  141 (369)
Q Consensus       126 ~~~~~f~~l~~l~~~~  141 (369)
                      +++  |.++++|...+
T Consensus       210 i~~--l~~l~~L~~L~  223 (227)
T d1h6ua2         210 VSP--LANTSNLFIVT  223 (227)
T ss_dssp             CGG--GTTCTTCCEEE
T ss_pred             Ccc--cccCCCCCEEE
Confidence            874  66666665544

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.51  E-value=3.4e-07  Score=66.72  Aligned_cols=84  Identities=19%  Similarity=0.243  Sum_probs=56.1

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC-----eEeeecccccccCCcceEEEEe--ecceeeEEEcccCCCCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNKRQYIIKT--INSLSNLTIVAVTMSDS  222 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~  222 (369)
                      +.+..+.+.+|++++|.|.........+.||++.     +.+.............++....  ......|.|.+++.+|+
T Consensus         6 Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1lp9e1           6 QTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDS   85 (115)
T ss_dssp             ECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGC
T ss_pred             cCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccC
Confidence            4466788999999999999987777789999842     1222212211111222333332  23355799999999999


Q ss_pred             EEEEEEEEeCC
Q psy12695        223 GIYTCRAKNGA  233 (369)
Q Consensus       223 G~Y~C~a~n~~  233 (369)
                      |.|.|.+....
T Consensus        86 g~YyCa~~~~~   96 (115)
T d1lp9e1          86 ALYYCALFLAS   96 (115)
T ss_dssp             EEEEEEEEECS
T ss_pred             ccceEEEEcCC
Confidence            99999876543

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.50  E-value=5.9e-07  Score=64.95  Aligned_cols=81  Identities=19%  Similarity=0.317  Sum_probs=56.4

Q ss_pred             CCCeeeccCCeEEEEEEeeCCC--CCeEEEEeCC-----eEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        152 TPDVTAEENENVTLSCRATGSP--VPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      |..+.+.+|++++|.|...+..  ...+.|+++.     ..+.............++..........|.|.+++.+|+|.
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~   86 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcc
Confidence            4578999999999999986543  3459999742     12222222222223445666666677899999999999999


Q ss_pred             EEEEEEeC
Q psy12695        225 YTCRAKNG  232 (369)
Q Consensus       225 Y~C~a~n~  232 (369)
                      |.|.+...
T Consensus        87 YyCA~~~~   94 (111)
T d1rzfl1          87 YYCGTWDS   94 (111)
T ss_dssp             EEEEEEET
T ss_pred             eEEeecCC
Confidence            99987654

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.50  E-value=4.6e-07  Score=65.10  Aligned_cols=82  Identities=15%  Similarity=0.314  Sum_probs=56.9

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEE
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYT  226 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  226 (369)
                      |..+.+.+|++++|.|.........+.|+++.  +   .+.............++..........|.|.+++.+|+|.|.
T Consensus         7 p~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYy   86 (109)
T d1w72l1           7 PPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYY   86 (109)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEE
Confidence            45688999999999999766555679999743  1   122212111122234555556667789999999999999999


Q ss_pred             EEEEeCC
Q psy12695        227 CRAKNGA  233 (369)
Q Consensus       227 C~a~n~~  233 (369)
                      |.+....
T Consensus        87 CA~~~~~   93 (109)
T d1w72l1          87 CQVWDSR   93 (109)
T ss_dssp             EEEEETT
T ss_pred             EEecCCC
Confidence            9986543

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.7e-07  Score=66.23  Aligned_cols=77  Identities=18%  Similarity=0.257  Sum_probs=49.8

Q ss_pred             eeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeeccc--ccc---cCCcceEEEEe---ecceeeEEEcccCCCCCEEEE
Q psy12695        155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISS--GLA---NMNKRQYIIKT---INSLSNLTIVAVTMSDSGIYT  226 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~---~~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~  226 (369)
                      +...+|++++|.|.........+.|++..........  ...   ..-..++....   ..+...|.|.+++.+|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            5578999999999998777778999986542211110  000   00111222111   123457999999999999999


Q ss_pred             EEEEe
Q psy12695        227 CRAKN  231 (369)
Q Consensus       227 C~a~n  231 (369)
                      |.+.+
T Consensus        84 C~v~~   88 (97)
T d2nxyb1          84 CEVED   88 (97)
T ss_dssp             EEETT
T ss_pred             EEEec
Confidence            99865

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.49  E-value=1.4e-07  Score=68.72  Aligned_cols=84  Identities=23%  Similarity=0.366  Sum_probs=56.8

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC-----eEeeecccccccCCcceEEEE--eecceeeEEEcccCCCC
Q psy12695        149 RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE-----KIIANISSGLANMNKRQYIIK--TINSLSNLTIVAVTMSD  221 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D  221 (369)
                      .+.|..+.+.+|++++|.|.....+...+.|++..     ..+.............++...  .......|.|.+++.+|
T Consensus         4 ~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~D   83 (114)
T d2cdea1           4 EQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSD   83 (114)
T ss_dssp             EEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGG
T ss_pred             EeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhh
Confidence            34577889999999999999987777789999743     112211111111122233332  23345689999999999


Q ss_pred             CEEEEEEEEeC
Q psy12695        222 SGIYTCRAKNG  232 (369)
Q Consensus       222 ~G~Y~C~a~n~  232 (369)
                      +|.|.|.+...
T Consensus        84 sg~Y~Ca~~~~   94 (114)
T d2cdea1          84 SASYICVVSDR   94 (114)
T ss_dssp             CSEEEEEEECS
T ss_pred             CcccceeeecC
Confidence            99999998764

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.49  E-value=2.6e-07  Score=66.89  Aligned_cols=83  Identities=20%  Similarity=0.275  Sum_probs=55.7

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCC----CCCeEEEEeC--Ce---EeeecccccccCCcceEEEEeecceeeEEEcccCCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGS----PVPKIKWIFK--EK---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMS  220 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~----p~p~i~W~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~  220 (369)
                      +.|..+.+.+|++++|.|.....    ....+.|+++  ++   .+.............++..........|.|.+++.+
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   85 (111)
T d1j05a_           6 QSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEAD   85 (111)
T ss_dssp             EECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGG
T ss_pred             ccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccc
Confidence            34677889999999999987432    2234999984  22   122212111122334566665666789999999999


Q ss_pred             CCEEEEEEEEeC
Q psy12695        221 DSGIYTCRAKNG  232 (369)
Q Consensus       221 D~G~Y~C~a~n~  232 (369)
                      |+|.|.|.+.+.
T Consensus        86 Dsa~YyCa~~~~   97 (111)
T d1j05a_          86 DVATYYCQQTNE   97 (111)
T ss_dssp             GCEEEEEEECSS
T ss_pred             cCccEEEeecCC
Confidence            999999987644

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.49  E-value=3.6e-07  Score=66.32  Aligned_cols=82  Identities=18%  Similarity=0.308  Sum_probs=54.9

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCC------CCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSP------VPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVT  218 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p------~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~  218 (369)
                      +.|..+.+.+|++++|.|..++..      ...+.|+++.  .   .+.............++..........|.|.+++
T Consensus         6 Q~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~   85 (113)
T d1q9ra1           6 QSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQ   85 (113)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC
T ss_pred             ccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccc
Confidence            447788999999999999875421      2349999842  1   1111111111122335555566677789999999


Q ss_pred             CCCCEEEEEEEEe
Q psy12695        219 MSDSGIYTCRAKN  231 (369)
Q Consensus       219 ~~D~G~Y~C~a~n  231 (369)
                      .+|+|.|.|.+..
T Consensus        86 ~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          86 AEDLAVYYCKQSY   98 (113)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             cCCCeEEEecccC
Confidence            9999999998653

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.49  E-value=5.6e-07  Score=65.14  Aligned_cols=81  Identities=23%  Similarity=0.400  Sum_probs=55.2

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCC-----CCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSP-----VPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM  219 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p-----~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~  219 (369)
                      +.|..+.+.+|++++|.|..++..     ...+.|+++.  .   .+.............++..........|.|.+++.
T Consensus         6 Q~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~   85 (112)
T d1mjul1           6 QAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEA   85 (112)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCG
T ss_pred             ecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccc
Confidence            456788899999999999886532     3468999743  1   12221111112223456666666678899999999


Q ss_pred             CCCEEEEEEEE
Q psy12695        220 SDSGIYTCRAK  230 (369)
Q Consensus       220 ~D~G~Y~C~a~  230 (369)
                      +|+|.|.|...
T Consensus        86 ~DsAvYyCa~~   96 (112)
T d1mjul1          86 EDVGVYYCLQH   96 (112)
T ss_dssp             GGCEEEEEEEC
T ss_pred             cCCceEEEEeC
Confidence            99999999643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.48  E-value=2e-09  Score=87.28  Aligned_cols=92  Identities=24%  Similarity=0.281  Sum_probs=63.2

Q ss_pred             ceEEEecCCCCCccCCCC--CCCccEEEeecceeCh--hhccCCcccCeeeccCCcccccCCcccccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPEQL--DVGTQVLDLSDNFLDR--YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP  122 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~--~~~~~~L~l~~n~i~~--~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~  122 (369)
                      .+.+++++++++.++. +  ..+++.|+|++|+|..  ..+..+++|+.|+|++|+|+.++.  |..+++|+.|+|++|.
T Consensus        50 L~~L~Ls~n~I~~i~~-l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~L~~N~  126 (198)
T d1m9la_          50 CKHLALSTNNIEKISS-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             CCEEECSEEEESCCCC-HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHH--HHHHHHSSEEEESEEE
T ss_pred             cceeECcccCCCCccc-ccCCccccChhhccccccccccccccccccccccccccccccccc--ccccccccccccccch
Confidence            4678888888887763 4  3578888888888763  334455677888888888877743  6677778888888887


Q ss_pred             eecccC-CcccccCcCcccc
Q psy12695        123 IQKITH-EAFINVPKLNLED  141 (369)
Q Consensus       123 l~~~~~-~~f~~l~~l~~~~  141 (369)
                      |+.++. ..|..+++|...+
T Consensus       127 i~~~~~~~~l~~l~~L~~L~  146 (198)
T d1m9la_         127 ITNWGEIDKLAALDKLEDLL  146 (198)
T ss_dssp             CCCHHHHHHHTTTTTCSEEE
T ss_pred             hccccccccccCCCccceee
Confidence            777653 3456666655433

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.47  E-value=5.5e-08  Score=84.59  Aligned_cols=92  Identities=23%  Similarity=0.337  Sum_probs=74.5

Q ss_pred             CeecccCCceEEEecCCCCCccCCCCCCCccEEEeecceeC-----hhhccCCcccCeeeccC-Cccc-ccCCccccccc
Q psy12695         39 CECKWKGGKETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLD-----RYTFRKLINLVELDLSY-NQIQ-FVPSHILDSIL  111 (369)
Q Consensus        39 C~c~~~~~~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~-----~~~f~~l~~L~~L~Ls~-N~l~-~i~~~~f~~l~  111 (369)
                      |.|.|.+    |.|...+-       ...++.|+|++|.+.     +..|.+|++|++|||++ |+++ .||+ .|..|+
T Consensus        34 C~~~w~g----v~C~~~~~-------~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~-~i~~L~  101 (313)
T d1ogqa_          34 CNRTWLG----VLCDTDTQ-------TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLT  101 (313)
T ss_dssp             TTTCSTT----EEECCSSS-------CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCT
T ss_pred             CCCcCCC----eEEeCCCC-------cEEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccc-cccccc
Confidence            6777764    88965321       235889999999975     46899999999999996 8888 4655 689999


Q ss_pred             ccccccccccceecccCCcccccCcCccccc
Q psy12695        112 ELRELKLSGNPIQKITHEAFINVPKLNLEDF  142 (369)
Q Consensus       112 ~L~~L~L~~N~l~~~~~~~f~~l~~l~~~~~  142 (369)
                      +|+.|+|++|+|..+.+..|..+..|...++
T Consensus       102 ~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l  132 (313)
T d1ogqa_         102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDF  132 (313)
T ss_dssp             TCSEEEEEEECCEEECCGGGGGCTTCCEEEC
T ss_pred             ccchhhhccccccccccccccchhhhccccc
Confidence            9999999999999999998988887765443

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.47  E-value=2.7e-07  Score=67.35  Aligned_cols=84  Identities=23%  Similarity=0.318  Sum_probs=54.6

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeC--Ce---Eeeec-cccccc--CCcceEEEEeecceeeEEEcccCCC
Q psy12695        149 RPITPDVTAEENENVTLSCRATGSPVPKIKWIFK--EK---IIANI-SSGLAN--MNKRQYIIKTINSLSNLTIVAVTMS  220 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~--~~---~~~~~-~~~~~~--~~~~~~~~~~~~~~~~L~I~~v~~~  220 (369)
                      ...+..+.+.+|++++|.|.........+.|++.  ++   .+... +.....  ....++..........|.|.+++.+
T Consensus         4 ~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1i9ea_           4 TQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWS   83 (115)
T ss_dssp             ECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGG
T ss_pred             EcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccc
Confidence            3455678999999999999987766678899973  21   12111 111111  1112222223334568999999999


Q ss_pred             CCEEEEEEEEeC
Q psy12695        221 DSGIYTCRAKNG  232 (369)
Q Consensus       221 D~G~Y~C~a~n~  232 (369)
                      |+|.|.|.+...
T Consensus        84 Dsg~YyCa~~~~   95 (115)
T d1i9ea_          84 DSAVYFCAVSGF   95 (115)
T ss_dssp             GCEEEEEEEEET
T ss_pred             ccceecccccCC
Confidence            999999987654

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.47  E-value=7e-07  Score=64.69  Aligned_cols=82  Identities=17%  Similarity=0.320  Sum_probs=57.0

Q ss_pred             CCCeeeccCCeEEEEEEeeCCC---CCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        152 TPDVTAEENENVTLSCRATGSP---VPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p---~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      |..+.+.+|++++|.|...+..   ...+.|+++.  +   .+.............++..........|.|.+++.+|+|
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   86 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA   86 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence            5678999999999999986532   3458999843  1   222222222223344565666667789999999999999


Q ss_pred             EEEEEEEeCC
Q psy12695        224 IYTCRAKNGA  233 (369)
Q Consensus       224 ~Y~C~a~n~~  233 (369)
                      .|.|.+.+..
T Consensus        87 ~YyCa~~~~~   96 (112)
T d1lgva1          87 DYYCSSYDGS   96 (112)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEeeecCC
Confidence            9999876543

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.47  E-value=3.4e-07  Score=66.20  Aligned_cols=82  Identities=20%  Similarity=0.215  Sum_probs=53.7

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--eE---eeecccccc--cCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--KI---IANISSGLA--NMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      +.|..+.+.+|+.++|.|...+.....+.||+..  +.   +........  ...+.............|.|.+++.+|+
T Consensus         4 Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (110)
T d1u3ha1           4 QSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDS   83 (110)
T ss_dssp             CSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSC
T ss_pred             ecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCc
Confidence            4567889999999999999876555679999842  11   111111110  1111222223334566899999999999


Q ss_pred             EEEEEEEEe
Q psy12695        223 GIYTCRAKN  231 (369)
Q Consensus       223 G~Y~C~a~n  231 (369)
                      |.|.|.+..
T Consensus        84 a~YyCa~~~   92 (110)
T d1u3ha1          84 ATYFCAASA   92 (110)
T ss_dssp             SEEEECCEE
T ss_pred             eeEeeeecC
Confidence            999998764

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.46  E-value=6.2e-07  Score=64.96  Aligned_cols=83  Identities=16%  Similarity=0.246  Sum_probs=56.5

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCC-----CCeEEEEeCC-----eEeeecccccccCCcceEEEEeecceeeEEEcccCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSP-----VPKIKWIFKE-----KIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM  219 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p-----~p~i~W~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~  219 (369)
                      +.|..+.+.+|++++|.|...+..     ...+.||++.     ..+.............+|..........|.|.+++.
T Consensus         7 Q~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~   86 (113)
T d1n4xl_           7 QTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEA   86 (113)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCG
T ss_pred             CcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCc
Confidence            346778899999999999985432     2469999843     112212211222334456666566678999999999


Q ss_pred             CCCEEEEEEEEeC
Q psy12695        220 SDSGIYTCRAKNG  232 (369)
Q Consensus       220 ~D~G~Y~C~a~n~  232 (369)
                      +|+|.|.|...+.
T Consensus        87 ~DsavYyCa~~~~   99 (113)
T d1n4xl_          87 EDLGIYYCFQGSH   99 (113)
T ss_dssp             GGCEEEEEEECSS
T ss_pred             ccCEEEEEEECCC
Confidence            9999999976543

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.46  E-value=5.6e-07  Score=64.25  Aligned_cols=81  Identities=22%  Similarity=0.281  Sum_probs=54.4

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCe-----EeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK-----IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      +.|..+.+.+|++++|.|..... ...+.||++..     .+.............++..........|.|.+++.+|+|.
T Consensus         5 QsP~~l~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   83 (104)
T d1yqvl1           5 QSPAIMSASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAAT   83 (104)
T ss_dssp             EESSEEEECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CcCCeEEECCCCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCe
Confidence            34677889999999999987543 45689998431     1111111111122345555555667889999999999999


Q ss_pred             EEEEEEe
Q psy12695        225 YTCRAKN  231 (369)
Q Consensus       225 Y~C~a~n  231 (369)
                      |.|.+..
T Consensus        84 YyCa~~~   90 (104)
T d1yqvl1          84 YYCQQWG   90 (104)
T ss_dssp             EEEEECS
T ss_pred             EEEEecC
Confidence            9997643

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.46  E-value=1.9e-07  Score=68.62  Aligned_cols=96  Identities=21%  Similarity=0.267  Sum_probs=57.3

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCC----CCCeEEEEeCC--e----Eeeecccc-cc----cCCcceEEE--EeecceeeE
Q psy12695        150 PITPDVTAEENENVTLSCRATGS----PVPKIKWIFKE--K----IIANISSG-LA----NMNKRQYII--KTINSLSNL  212 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~----p~p~i~W~~~~--~----~~~~~~~~-~~----~~~~~~~~~--~~~~~~~~L  212 (369)
                      ..|..+.+..|++++|.|.+...    ....+.|++..  .    .+...... ..    ..-..|+..  ....+...|
T Consensus         4 ~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   83 (119)
T d1neua_           4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSI   83 (119)
T ss_dssp             ECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCE
T ss_pred             cCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEE
Confidence            34677889999999999987532    23368998732  1    11110000 00    001123322  223345689


Q ss_pred             EEcccCCCCCEEEEEEEEeCCc--eEEEEEEEEEe
Q psy12695        213 TIVAVTMSDSGIYTCRAKNGAG--EVFTNISLNVI  245 (369)
Q Consensus       213 ~I~~v~~~D~G~Y~C~a~n~~g--~~~~~~~l~v~  245 (369)
                      .|.+++.+|+|.|.|.+.+..+  .....+.|.|.
T Consensus        84 ~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          84 VIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             EECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            9999999999999999987543  34555666664

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.45  E-value=4.2e-07  Score=65.32  Aligned_cols=81  Identities=17%  Similarity=0.311  Sum_probs=57.2

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEE
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYT  226 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  226 (369)
                      |..+.+.+|++++|.|.........+.|+++.  +   .+.............+|..........|.|.+++.+|+|.|.
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Yy   85 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEE
Confidence            56788999999999998865555579999842  2   122111111222334666666667789999999999999999


Q ss_pred             EEEEeC
Q psy12695        227 CRAKNG  232 (369)
Q Consensus       227 C~a~n~  232 (369)
                      |.+...
T Consensus        86 CA~~~~   91 (108)
T d1nfde1          86 CLSSYG   91 (108)
T ss_dssp             EEEEET
T ss_pred             EEeecC
Confidence            987643

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.45  E-value=8.5e-07  Score=64.05  Aligned_cols=83  Identities=13%  Similarity=0.286  Sum_probs=55.3

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCC-----CCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSP-----VPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM  219 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p-----~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~  219 (369)
                      +.|..+.+.+|++++|.|...+..     ...+.|+++.  .   .+.............+|..........|.|.+++.
T Consensus         6 QsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~   85 (112)
T d1ncwl1           6 QSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEA   85 (112)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             CcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcccc
Confidence            346778899999999999865432     2458999742  2   12211111111223456665666778999999999


Q ss_pred             CCCEEEEEEEEeC
Q psy12695        220 SDSGIYTCRAKNG  232 (369)
Q Consensus       220 ~D~G~Y~C~a~n~  232 (369)
                      +|+|.|.|...+.
T Consensus        86 eDsAvYYC~~~~~   98 (112)
T d1ncwl1          86 EDLGVYYCWQGTH   98 (112)
T ss_dssp             GGCEEEEEEECSS
T ss_pred             CcCEeEEEEcCCC
Confidence            9999999965443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.44  E-value=3.3e-09  Score=86.04  Aligned_cols=79  Identities=23%  Similarity=0.232  Sum_probs=49.2

Q ss_pred             CCccCCCC--CCCccEEEeecceeCh-hhccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCcccc
Q psy12695         57 FTTIPEQL--DVGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFIN  133 (369)
Q Consensus        57 l~~ip~~~--~~~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~  133 (369)
                      +..+|..+  ..+++.|+|++|+|.. ..|.++++|+.|+|++|+|+.|+. .+..+++|+.|++++|.|+.++.  |..
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~l~~N~i~~l~~--~~~  113 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLSG--IEK  113 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSS-HHHHHHHCCEEECSEEECCCHHH--HHH
T ss_pred             hhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhcccccccccc-ccccccccccccccccccccccc--ccc
Confidence            44444333  3467777777777663 246677777777777777777753 34455667777777777777642  444


Q ss_pred             cCcCc
Q psy12695        134 VPKLN  138 (369)
Q Consensus       134 l~~l~  138 (369)
                      +++|.
T Consensus       114 l~~L~  118 (198)
T d1m9la_         114 LVNLR  118 (198)
T ss_dssp             HHHSS
T ss_pred             ccccc
Confidence            44433

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=7.1e-08  Score=69.47  Aligned_cols=86  Identities=21%  Similarity=0.257  Sum_probs=54.4

Q ss_pred             eeccCCeEEEEEEeeCCCCCeEEEEeCCeE-----eeecc-cccc----cCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        156 TAEENENVTLSCRATGSPVPKIKWIFKEKI-----IANIS-SGLA----NMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       156 ~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~-----~~~~~-~~~~----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      .+.+|+++.|.|.........+.|++....     +.... ....    ..-..|..+   ..+++|.|.+++.+|+|.|
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l---~~ngSL~I~~v~~~D~G~Y   86 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII---YSNGSLLFQMITMKDMGVY   86 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEE---CTTSCEEECSCCGGGCEEE
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEE---cccccEEEcCCCchhCEEE
Confidence            367999999999854444567999985432     11110 0000    000123222   2457899999999999999


Q ss_pred             EEEEEeCCce-EEEEEEEEE
Q psy12695        226 TCRAKNGAGE-VFTNISLNV  244 (369)
Q Consensus       226 ~C~a~n~~g~-~~~~~~l~v  244 (369)
                      +|.+.+..+. ..+.+.|.|
T Consensus        87 ~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          87 TLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEEETTEEECCCCEEECC
T ss_pred             EEEEEECCCCEEEEEEEEEE
Confidence            9999887644 445566554

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=6.1e-07  Score=65.22  Aligned_cols=83  Identities=19%  Similarity=0.241  Sum_probs=54.3

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCC-CCCeEEEEeCC--eE---eeec-ccccccCCcceEEEEee--cceeeEEEcccCCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGS-PVPKIKWIFKE--KI---IANI-SSGLANMNKRQYIIKTI--NSLSNLTIVAVTMS  220 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~--~~---~~~~-~~~~~~~~~~~~~~~~~--~~~~~L~I~~v~~~  220 (369)
                      ..|..+.+.+|++++|.|.+.+. ....+.||++.  ..   +... ..........+|.+...  .....|.|.+++.+
T Consensus         4 qsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~   83 (114)
T d3bp5a1           4 FYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRN   83 (114)
T ss_dssp             EESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGG
T ss_pred             ECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcC
Confidence            45678899999999999998654 34468999842  21   1111 11111122335554432  23467999999999


Q ss_pred             CCEEEEEEEEeC
Q psy12695        221 DSGIYTCRAKNG  232 (369)
Q Consensus       221 D~G~Y~C~a~n~  232 (369)
                      |+|.|.|.+...
T Consensus        84 Dsg~YyCa~~~~   95 (114)
T d3bp5a1          84 DSGIYLCGAISL   95 (114)
T ss_dssp             GCEEEEEEEECS
T ss_pred             CCeEEEEEEEeC
Confidence            999999988654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.41  E-value=1.2e-07  Score=84.42  Aligned_cols=70  Identities=20%  Similarity=0.225  Sum_probs=44.5

Q ss_pred             CCccEEEeecceeChh-hccCCcccCeeeccCCcccccCCcccccccccccccccccceecccCCcccccCcCcc
Q psy12695         66 VGTQVLDLSDNFLDRY-TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKITHEAFINVPKLNL  139 (369)
Q Consensus        66 ~~~~~L~l~~n~i~~~-~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~  139 (369)
                      ..++.|+|++|+|..- .|.++++|++|+|++|+|+.++  .|.++++|++|+|++|+|+.+++  |.++++|..
T Consensus       307 ~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~--~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~  377 (384)
T d2omza2         307 KNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQ  377 (384)
T ss_dssp             TTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSE
T ss_pred             cccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCCh--hHcCCCCCCEEECCCCcCCCChh--hccCCCCCE
Confidence            3456667777766532 3667777777777777777664  36667777777777777776653  555554443

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.40  E-value=4e-07  Score=66.31  Aligned_cols=85  Identities=20%  Similarity=0.238  Sum_probs=53.9

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeC-CCCCeEEEEeCC--eE---eeec-ccccc--cCCcceEEEEeecceeeEEEcccCC
Q psy12695        149 RPITPDVTAEENENVTLSCRATG-SPVPKIKWIFKE--KI---IANI-SSGLA--NMNKRQYIIKTINSLSNLTIVAVTM  219 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g-~p~p~i~W~~~~--~~---~~~~-~~~~~--~~~~~~~~~~~~~~~~~L~I~~v~~  219 (369)
                      ...+..+.+.+|++|+|.|.... .....+.||+..  +.   +... .....  .....++..........|.|.+++.
T Consensus         4 tQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   83 (114)
T d2ak4d1           4 TQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQV   83 (114)
T ss_dssp             ECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             EecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccc
Confidence            34567888999999999998754 344568999832  21   1111 11111  1111222233334566899999999


Q ss_pred             CCCEEEEEEEEeCC
Q psy12695        220 SDSGIYTCRAKNGA  233 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~  233 (369)
                      +|+|.|.|.+....
T Consensus        84 ~Dsg~YyCa~~~~~   97 (114)
T d2ak4d1          84 VDSAVYFCALSGFY   97 (114)
T ss_dssp             GGCEEEEEEEECSB
T ss_pred             ccCCCceEeCCCCC
Confidence            99999999876543

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.40  E-value=9e-07  Score=63.99  Aligned_cols=82  Identities=15%  Similarity=0.293  Sum_probs=53.8

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCC--CeEEEEeCC--eE---eeecccccccCCcceEEE--EeecceeeEEEcccCCCCC
Q psy12695        152 TPDVTAEENENVTLSCRATGSPV--PKIKWIFKE--KI---IANISSGLANMNKRQYII--KTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~--p~i~W~~~~--~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~L~I~~v~~~D~  222 (369)
                      |..+++.+|++++|.|..++...  ..+.|+++.  +.   +.............++..  ........|.|.+++.+|+
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   86 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDE   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccC
Confidence            56788999999999999876543  349999843  21   111111111112233433  3345567999999999999


Q ss_pred             EEEEEEEEeCC
Q psy12695        223 GIYTCRAKNGA  233 (369)
Q Consensus       223 G~Y~C~a~n~~  233 (369)
                      |.|.|.+.+..
T Consensus        87 a~YyCA~~~~~   97 (111)
T d1cd0a_          87 ADYYCQSYDAR   97 (111)
T ss_dssp             EEEEEEEEETT
T ss_pred             cEEEEeeccCC
Confidence            99999876544

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.40  E-value=3.8e-07  Score=66.54  Aligned_cols=82  Identities=23%  Similarity=0.367  Sum_probs=52.8

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCC-CCCeEEEEeCC-----eEe---eec-cccc----ccCCcceEEEEe--ecceeeEE
Q psy12695        150 PITPDVTAEENENVTLSCRATGS-PVPKIKWIFKE-----KII---ANI-SSGL----ANMNKRQYIIKT--INSLSNLT  213 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~~-----~~~---~~~-~~~~----~~~~~~~~~~~~--~~~~~~L~  213 (369)
                      ..|..+.+.+|++++|.|.+.+. ....+.|++..     +.+   ... ....    ......++....  ......|.
T Consensus         3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (115)
T d2atpb1           3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLS   82 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEE
T ss_pred             eeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEe
Confidence            45677889999999999998764 44569999742     211   111 1110    111222333222  23456799


Q ss_pred             EcccCCCCCEEEEEEEEe
Q psy12695        214 IVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       214 I~~v~~~D~G~Y~C~a~n  231 (369)
                      |.+++.+|+|.|.|.+..
T Consensus        83 I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          83 IMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             ECSCCGGGCEEEEEEEEC
T ss_pred             ecccCCCCCcEEEEeEcC
Confidence            999999999999998754

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.39  E-value=1.3e-06  Score=62.91  Aligned_cols=83  Identities=20%  Similarity=0.289  Sum_probs=54.7

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--eE---eeecc-ccc---ccCCcceEEEEeecceeeEEEcccCC
Q psy12695        149 RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--KI---IANIS-SGL---ANMNKRQYIIKTINSLSNLTIVAVTM  219 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~---~~~~~-~~~---~~~~~~~~~~~~~~~~~~L~I~~v~~  219 (369)
                      .+.|..+.+.+|++++|.|...+ ....+.||++.  +.   +.... ...   ..................|.|.+++.
T Consensus         5 ~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   83 (110)
T d2aq2a1           5 TQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATP   83 (110)
T ss_dssp             EEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCG
T ss_pred             EEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCH
Confidence            34577888999999999998765 35679999842  21   11111 111   11122233333445567899999999


Q ss_pred             CCCEEEEEEEEeC
Q psy12695        220 SDSGIYTCRAKNG  232 (369)
Q Consensus       220 ~D~G~Y~C~a~n~  232 (369)
                      +|+|.|.|.+...
T Consensus        84 ~Dsa~YyCa~~~~   96 (110)
T d2aq2a1          84 SQTSVYFCASGGG   96 (110)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             hhCEEEEEeeCCC
Confidence            9999999987654

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.37  E-value=1.1e-06  Score=63.49  Aligned_cols=84  Identities=23%  Similarity=0.349  Sum_probs=55.7

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---EeeecccccccCCcceEEE--EeecceeeEEEcccCCC
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANISSGLANMNKRQYII--KTINSLSNLTIVAVTMS  220 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~I~~v~~~  220 (369)
                      +...|..+.+.+|++++|.|...+.....+.|++..  +   .+.............++..  ........|.|.+++.+
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPG   82 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCccc
Confidence            345577788999999999999877777789999842  1   1211111111111123332  23345679999999999


Q ss_pred             CCEEEEEEEEe
Q psy12695        221 DSGIYTCRAKN  231 (369)
Q Consensus       221 D~G~Y~C~a~n  231 (369)
                      |+|.|.|.+..
T Consensus        83 Dsa~YyCa~~~   93 (111)
T d1bd2d1          83 DSAVYFCAAME   93 (111)
T ss_dssp             GCEEEEEEEES
T ss_pred             ccEEEEeeccC
Confidence            99999998764

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=2.3e-06  Score=61.46  Aligned_cols=82  Identities=16%  Similarity=0.264  Sum_probs=50.7

Q ss_pred             CCCeeeccCCeEEEEEEeeCCC--CCeEEEEeCCe--E---eeecccccccCCcceEEE--EeecceeeEEEcccCCCCC
Q psy12695        152 TPDVTAEENENVTLSCRATGSP--VPKIKWIFKEK--I---IANISSGLANMNKRQYII--KTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~~~--~---~~~~~~~~~~~~~~~~~~--~~~~~~~~L~I~~v~~~D~  222 (369)
                      ++.+.+.+|++++|.|......  ...+.|++...  .   +.............++..  ....+...|.|.+++.+|+
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~Ds   82 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS   82 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCC
Confidence            3457789999999999875433  23578987421  1   111111111111223322  2334567899999999999


Q ss_pred             EEEEEEEEeCC
Q psy12695        223 GIYTCRAKNGA  233 (369)
Q Consensus       223 G~Y~C~a~n~~  233 (369)
                      |.|.|.+....
T Consensus        83 G~Y~C~v~~~~   93 (108)
T d1hkfa_          83 GHYWCRIYRPS   93 (108)
T ss_dssp             EEEEEEEECTT
T ss_pred             EEEEEEEecCC
Confidence            99999987544

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.37  E-value=8.3e-07  Score=64.64  Aligned_cols=84  Identities=19%  Similarity=0.276  Sum_probs=54.1

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeC-CCCCeEEEEeCC--eE---eeec-ccccccCCcceEEEEe--ecceeeEEEcccCC
Q psy12695        149 RPITPDVTAEENENVTLSCRATG-SPVPKIKWIFKE--KI---IANI-SSGLANMNKRQYIIKT--INSLSNLTIVAVTM  219 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g-~p~p~i~W~~~~--~~---~~~~-~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~  219 (369)
                      .+.+..+.+.+|++|+|.|...+ .....+.||++.  +.   +... +.........++....  ......|.|.+++.
T Consensus         3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1fo0a_           3 TQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI   82 (115)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             EccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCc
Confidence            45567889999999999998753 444568999843  11   1111 1111111122333333  34456899999999


Q ss_pred             CCCEEEEEEEEeC
Q psy12695        220 SDSGIYTCRAKNG  232 (369)
Q Consensus       220 ~D~G~Y~C~a~n~  232 (369)
                      +|+|.|.|.+...
T Consensus        83 ~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          83 EDSAVYFCAMRGD   95 (115)
T ss_dssp             GGCEEEEEEEECC
T ss_pred             cccccccceeecC
Confidence            9999999997644

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.36  E-value=5.4e-07  Score=65.65  Aligned_cols=84  Identities=18%  Similarity=0.285  Sum_probs=55.2

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---Eeeecc-cccccCCcceEEEEe--ecceeeEEEcccCCC
Q psy12695        149 RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANIS-SGLANMNKRQYIIKT--INSLSNLTIVAVTMS  220 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~-~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~  220 (369)
                      ...|..+.+.+|+.++|.|.........+.||++.  +   .+.... .........++....  ......|.|.+++.+
T Consensus         4 tQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1j8hd1           4 TQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMS   83 (115)
T ss_dssp             ECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGG
T ss_pred             EcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccccc
Confidence            34567889999999999999977666789999842  1   121111 111111122333322  233457999999999


Q ss_pred             CCEEEEEEEEeC
Q psy12695        221 DSGIYTCRAKNG  232 (369)
Q Consensus       221 D~G~Y~C~a~n~  232 (369)
                      |+|.|.|.+...
T Consensus        84 Dsa~YyCa~~~~   95 (115)
T d1j8hd1          84 DAAEYFCAVSES   95 (115)
T ss_dssp             GCEEEEEEEESS
T ss_pred             CCccceeeecCC
Confidence            999999998654

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.35  E-value=8.3e-07  Score=64.27  Aligned_cols=81  Identities=19%  Similarity=0.256  Sum_probs=53.7

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCC-CCeEEEEeCC--e---EeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEE
Q psy12695        151 ITPDVTAEENENVTLSCRATGSP-VPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p-~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  224 (369)
                      .|..+.+.+|++++|.|...+.. ...+.||++.  +   .+.............++.+........|.|.+++.+|+|.
T Consensus         4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~   83 (112)
T d1kgcd1           4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAV   83 (112)
T ss_dssp             CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeeccccccee
Confidence            35678899999999999986544 3459999842  2   1221111111122334444444556689999999999999


Q ss_pred             EEEEEEe
Q psy12695        225 YTCRAKN  231 (369)
Q Consensus       225 Y~C~a~n  231 (369)
                      |.|.+..
T Consensus        84 YyCa~~~   90 (112)
T d1kgcd1          84 YYCILPL   90 (112)
T ss_dssp             EEEECCC
T ss_pred             EeeeEec
Confidence            9998754

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=3.1e-08  Score=77.35  Aligned_cols=61  Identities=33%  Similarity=0.247  Sum_probs=40.8

Q ss_pred             CccEEEeecceeCh-----hhccCCcccCeeeccCCcccccCCcccccccccccccccccceeccc
Q psy12695         67 GTQVLDLSDNFLDR-----YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT  127 (369)
Q Consensus        67 ~~~~L~l~~n~i~~-----~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~  127 (369)
                      .+++|+|++|+|+.     ..|..+++|+.|||++|+|+.+++..+-....|+.|+|++|++....
T Consensus        66 ~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          66 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             TCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             CCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCc
Confidence            56777777777652     34556777777777777777776655544456777777777776543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.33  E-value=5.3e-07  Score=73.37  Aligned_cols=93  Identities=22%  Similarity=0.280  Sum_probs=73.6

Q ss_pred             CceEEEecCCCCCccCC-CCCCCccEEEeecceeCh-hhccCCcccCeeeccCCcccccCCcccccccccccccccccce
Q psy12695         46 GKETVLCKAKNFTTIPE-QLDVGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI  123 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~-~~~~~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l  123 (369)
                      ..+.+++++++++.++. ....++++|+|++|+|.. ..+.++++|+.|+|++|+|+.++  .|.++++|+.|++++|.+
T Consensus        47 ~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~~~~  124 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGI  124 (210)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTTSCC
T ss_pred             CccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccccccCccccccccccccccccc--cccccccccccccccccc
Confidence            35689999999988774 224689999999999874 35788999999999999999986  478899999999999998


Q ss_pred             ecccCCcccccCcCccccc
Q psy12695        124 QKITHEAFINVPKLNLEDF  142 (369)
Q Consensus       124 ~~~~~~~f~~l~~l~~~~~  142 (369)
                      ..++  .|..++.+....+
T Consensus       125 ~~~~--~l~~l~~l~~l~~  141 (210)
T d1h6ta2         125 SDIN--GLVHLPQLESLYL  141 (210)
T ss_dssp             CCCG--GGGGCTTCCEEEC
T ss_pred             cccc--ccccccccccccc
Confidence            8765  4666666554433

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.31  E-value=1.4e-06  Score=63.52  Aligned_cols=86  Identities=20%  Similarity=0.322  Sum_probs=55.7

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCC-CCCeEEEEeC--CeE---eeecccccc---cCCcceEEEEee--cceeeEEEcc
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGS-PVPKIKWIFK--EKI---IANISSGLA---NMNKRQYIIKTI--NSLSNLTIVA  216 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~-p~p~i~W~~~--~~~---~~~~~~~~~---~~~~~~~~~~~~--~~~~~L~I~~  216 (369)
                      +...|..+.+.+|++++|.|...+. ....+.|++.  ++.   +........   .....++.....  .....|+|.+
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP   82 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence            3456788999999999999998543 4567999973  221   111111111   112235544332  3346799999


Q ss_pred             cCCCCCEEEEEEEEeCC
Q psy12695        217 VTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       217 v~~~D~G~Y~C~a~n~~  233 (369)
                      ++.+|+|.|.|.+....
T Consensus        83 ~~~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          83 VRTEDSATYYCAFTLPP   99 (116)
T ss_dssp             CCGGGCEEEEEEEECTT
T ss_pred             ccccccccceeeEecCC
Confidence            99999999999876544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.31  E-value=5.4e-07  Score=72.66  Aligned_cols=92  Identities=23%  Similarity=0.296  Sum_probs=59.1

Q ss_pred             ceEEEecCCCCCccCC-CCCCCccEEEeecceeC-hhhccCCcccCeeeccCCcccccCCccccccccccccccccccee
Q psy12695         47 KETVLCKAKNFTTIPE-QLDVGTQVLDLSDNFLD-RYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQ  124 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~-~~~~~~~~L~l~~n~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~  124 (369)
                      .+.++++++.+..+|. .-...++.|++++|.+. ...|.++++|+.|++++|++..++  .|..+++|+.|++.+|.++
T Consensus        86 L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~  163 (199)
T d2omxa2          86 LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVT  163 (199)
T ss_dssp             CCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccchhhhhHHhhhhhhhhcccc--ccccccccccccccccccc
Confidence            4678888887777663 11345777777777744 234667777777777777776654  3566677777777777776


Q ss_pred             cccCCcccccCcCccccc
Q psy12695        125 KITHEAFINVPKLNLEDF  142 (369)
Q Consensus       125 ~~~~~~f~~l~~l~~~~~  142 (369)
                      .+++  |.++++|...++
T Consensus       164 ~l~~--l~~l~~L~~L~l  179 (199)
T d2omxa2         164 DLKP--LANLTTLERLDI  179 (199)
T ss_dssp             CCGG--GTTCTTCCEEEC
T ss_pred             CCcc--ccCCCCCCEEEC
Confidence            6652  555555554443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.29  E-value=5.4e-07  Score=79.01  Aligned_cols=87  Identities=21%  Similarity=0.195  Sum_probs=66.1

Q ss_pred             ceEEEecCCCCCccCCCCCCCccEEEeecceeChhhccCCcccCeeeccCCcccccCCcccccccccccccccccceecc
Q psy12695         47 KETVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKI  126 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~  126 (369)
                      .+.+++++++|+.+|+ ++.++++|+|++|+|..-. ..+.+|+.|++++|+++.|+.-    .+.|+.|+|++|.|..+
T Consensus        40 l~~LdLs~~~L~~lp~-~~~~L~~L~Ls~N~l~~lp-~~~~~L~~L~l~~n~l~~l~~l----p~~L~~L~L~~n~l~~l  113 (353)
T d1jl5a_          40 AHELELNNLGLSSLPE-LPPHLESLVASCNSLTELP-ELPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKL  113 (353)
T ss_dssp             CSEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCC-CCCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSC
T ss_pred             CCEEEeCCCCCCCCCC-CCCCCCEEECCCCCCcccc-cchhhhhhhhhhhcccchhhhh----ccccccccccccccccc
Confidence            5689999999999996 6678999999999987221 2346889999999999887642    14689999999999888


Q ss_pred             cCCcccccCcCcccc
Q psy12695        127 THEAFINVPKLNLED  141 (369)
Q Consensus       127 ~~~~f~~l~~l~~~~  141 (369)
                      +.  +..+..|...+
T Consensus       114 p~--~~~l~~L~~L~  126 (353)
T d1jl5a_         114 PE--LQNSSFLKIID  126 (353)
T ss_dssp             CC--CTTCTTCCEEE
T ss_pred             cc--hhhhccceeec
Confidence            74  44555554433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.29  E-value=5.4e-07  Score=73.34  Aligned_cols=88  Identities=22%  Similarity=0.238  Sum_probs=49.3

Q ss_pred             ceEEEecCCCCCccCCCC-CCCccEEEeecceeC-hhh----------------------ccCCcccCeeeccCCccccc
Q psy12695         47 KETVLCKAKNFTTIPEQL-DVGTQVLDLSDNFLD-RYT----------------------FRKLINLVELDLSYNQIQFV  102 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~~~-~~~~~~L~l~~n~i~-~~~----------------------f~~l~~L~~L~Ls~N~l~~i  102 (369)
                      .+.++++++.++.+|..- ...++.|++++|.+. ...                      +..+++|+.|++++|+++.+
T Consensus        92 L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i  171 (210)
T d1h6ta2          92 LGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI  171 (210)
T ss_dssp             CCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            567888888888777411 245777777777633 123                      34455555555555555554


Q ss_pred             CCcccccccccccccccccceecccCCcccccCcCc
Q psy12695        103 PSHILDSILELRELKLSGNPIQKITHEAFINVPKLN  138 (369)
Q Consensus       103 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~  138 (369)
                      ++  |.++++|+.|+|++|.|+.++  .|.++++|.
T Consensus       172 ~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~  203 (210)
T d1h6ta2         172 VP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLD  203 (210)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCS
T ss_pred             cc--ccCCCCCCEEECCCCCCCCCh--hhcCCCCCC
Confidence            32  445555555555555555543  244444443

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.28  E-value=8.7e-07  Score=64.28  Aligned_cols=84  Identities=19%  Similarity=0.367  Sum_probs=52.2

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--eE---eeecccccccCCc-ceEEEEeecceeeEEEcccCCCCC
Q psy12695        149 RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--KI---IANISSGLANMNK-RQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      ...|..+.+.+|++++|.|...+. ...+.||++.  +.   +..........+. ..+..........|.|.+++.+|+
T Consensus         5 ~Q~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (113)
T d1h5ba_           5 EQSPSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDS   83 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGC
T ss_pred             EECCCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHC
Confidence            345678889999999999998653 4579999842  21   1111111111111 111111123455799999999999


Q ss_pred             EEEEEEEEeCC
Q psy12695        223 GIYTCRAKNGA  233 (369)
Q Consensus       223 G~Y~C~a~n~~  233 (369)
                      |.|.|.+....
T Consensus        84 a~YyCa~~~~~   94 (113)
T d1h5ba_          84 GTYFCAAEASS   94 (113)
T ss_dssp             EEEEEEEECSS
T ss_pred             EEEEEEecCCC
Confidence            99999986543

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.27  E-value=2.2e-06  Score=62.52  Aligned_cols=83  Identities=23%  Similarity=0.425  Sum_probs=56.1

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--eE---eeec-c--cc--cccCCcceEEEEe-ecceeeEEEcccC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--KI---IANI-S--SG--LANMNKRQYIIKT-INSLSNLTIVAVT  218 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~---~~~~-~--~~--~~~~~~~~~~~~~-~~~~~~L~I~~v~  218 (369)
                      +.|..+.+.+|++++|.|...+.....+.||++.  +.   +... .  ..  .......++.... ......|.|.+++
T Consensus         6 Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~   85 (118)
T d2ij0c1           6 QHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAH   85 (118)
T ss_dssp             EECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCC
T ss_pred             EcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccc
Confidence            4466788999999999999877767789999842  21   1111 1  11  1112244555543 3345679999999


Q ss_pred             CCCCEEEEEEEEeC
Q psy12695        219 MSDSGIYTCRAKNG  232 (369)
Q Consensus       219 ~~D~G~Y~C~a~n~  232 (369)
                      .+|+|.|.|.+...
T Consensus        86 ~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          86 PEDSGFYVCSALAG   99 (118)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cccCceEEEEEecC
Confidence            99999999998643

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.27  E-value=2.5e-06  Score=61.43  Aligned_cols=84  Identities=20%  Similarity=0.322  Sum_probs=55.5

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---EeeecccccccCCcceEEEEee--cceeeEEEcccCCCCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANISSGLANMNKRQYIIKTI--NSLSNLTIVAVTMSDS  222 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~  222 (369)
                      +.|..+.+.+|++++|.|.........+.||++.  +   .+.............+|.....  .....|.|.+++.+|+
T Consensus         5 Q~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Ds   84 (110)
T d1ac6a_           5 QTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDS   84 (110)
T ss_dssp             ECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGC
T ss_pred             eCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCC
Confidence            4567788999999999999876656679999842  1   1221111111112233433322  3456899999999999


Q ss_pred             EEEEEEEEeCC
Q psy12695        223 GIYTCRAKNGA  233 (369)
Q Consensus       223 G~Y~C~a~n~~  233 (369)
                      |.|.|.+....
T Consensus        85 a~YyCA~~~~~   95 (110)
T d1ac6a_          85 AVYYCALSGGN   95 (110)
T ss_dssp             EEEEEEEEETT
T ss_pred             cccceeecCCC
Confidence            99999886543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.25  E-value=3.8e-07  Score=81.17  Aligned_cols=74  Identities=19%  Similarity=0.165  Sum_probs=63.6

Q ss_pred             ceEEEecCCCCCccCC-CCCCCccEEEeecceeCh-hhccCCcccCeeeccCCcccccCCcccccccccccccccccc
Q psy12695         47 KETVLCKAKNFTTIPE-QLDVGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNP  122 (369)
Q Consensus        47 ~~~~~c~~~~l~~ip~-~~~~~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~  122 (369)
                      ...+++++++++.++. .-.+.++.|+|++|+|.. ..|.++++|++|+|++|+|+.+++  |.++++|+.|+|++|.
T Consensus       309 l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         309 LTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             cCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence            4679999999998763 224579999999999873 369999999999999999999876  8999999999999983

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.25  E-value=1.6e-06  Score=63.02  Aligned_cols=84  Identities=20%  Similarity=0.459  Sum_probs=54.6

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---Eeeeccccc--ccCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANISSGL--ANMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      ..|..+.+.+|++++|.|...+. ...+.||++.  .   .+.......  .......+..........|.|.+++.+|+
T Consensus         5 Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (115)
T d1ogad1           5 QSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDT   83 (115)
T ss_dssp             EECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGC
T ss_pred             eCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccce
Confidence            34677889999999999998654 4479999842  1   111111111  11112223333344567899999999999


Q ss_pred             EEEEEEEEeCCc
Q psy12695        223 GIYTCRAKNGAG  234 (369)
Q Consensus       223 G~Y~C~a~n~~g  234 (369)
                      |.|.|.+....+
T Consensus        84 a~YyCa~~~~~~   95 (115)
T d1ogad1          84 GLYLCAGAGSQG   95 (115)
T ss_dssp             EEEEEEEECTTS
T ss_pred             eeEcccccCCCC
Confidence            999998875543

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.24  E-value=9.5e-07  Score=64.02  Aligned_cols=77  Identities=19%  Similarity=0.307  Sum_probs=51.0

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCC--CCCeEEEEeCC--eEeeecccccccCCcceEEEEe--ecceeeEEEcccCCCCCE
Q psy12695        150 PITPDVTAEENENVTLSCRATGS--PVPKIKWIFKE--KIIANISSGLANMNKRQYIIKT--INSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~--p~p~i~W~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G  223 (369)
                      +.|..+.+.+|++++|.|.+++.  ....+.|+++.  .....     ......++....  ......|+|.+++.+|+|
T Consensus         5 Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   79 (113)
T d1vesa_           5 QTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQ-----SISIGGRYVETVNKGSKSFSLRISDLRVEDSG   79 (113)
T ss_dssp             EECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCE-----ECCCBTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             eeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeecccccee-----eeeecccccceeECCCCceeeeecccccCCcc
Confidence            44678889999999999998754  33569999742  11100     001112233222  233458999999999999


Q ss_pred             EEEEEEEe
Q psy12695        224 IYTCRAKN  231 (369)
Q Consensus       224 ~Y~C~a~n  231 (369)
                      .|.|.+..
T Consensus        80 ~YyCa~~~   87 (113)
T d1vesa_          80 TYKCQAFY   87 (113)
T ss_dssp             EEEEEEEE
T ss_pred             eEeeeeec
Confidence            99999854

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.21  E-value=3.1e-06  Score=58.99  Aligned_cols=72  Identities=19%  Similarity=0.299  Sum_probs=47.4

Q ss_pred             CCeEEEEEEeeCCCCCeEEEEeCC--e---EeeecccccccCCcceEEEEe--ecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        160 NENVTLSCRATGSPVPKIKWIFKE--K---IIANISSGLANMNKRQYIIKT--INSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       160 G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      |++++|.|...+.....+.|+++.  +   .+....... .....++....  ......|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~-~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNG-DKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSE-EEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeec-cCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            789999999887777789999832  1   121111111 11223444432  234568999999999999999987643

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.21  E-value=1.4e-06  Score=62.81  Aligned_cols=78  Identities=21%  Similarity=0.298  Sum_probs=51.5

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCC--CCCeEEEEeCC--eEeeecccccccCCcceEEEEee--cceeeEEEcccCCCCCE
Q psy12695        150 PITPDVTAEENENVTLSCRATGS--PVPKIKWIFKE--KIIANISSGLANMNKRQYIIKTI--NSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~--p~p~i~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G  223 (369)
                      +.|..+++.+|++++|.|...+.  ....+.||++.  +...     .......++.....  .....|.|.+++.+|+|
T Consensus         4 Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~-----~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa   78 (112)
T d1sq2n_           4 QTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNE-----ESISKGGRYVETVNSGSKSFSLRINDLTVEDGG   78 (112)
T ss_dssp             EECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCC-----EECCCBTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             ecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceee-----eeeccCCcEeeEEecCCceeeeEecCCcCccCE
Confidence            44677889999999999988653  34679999732  1110     00011123333322  24568999999999999


Q ss_pred             EEEEEEEeC
Q psy12695        224 IYTCRAKNG  232 (369)
Q Consensus       224 ~Y~C~a~n~  232 (369)
                      .|.|.+...
T Consensus        79 ~YyCA~~~~   87 (112)
T d1sq2n_          79 TYRCGLGVA   87 (112)
T ss_dssp             EEEEEECBT
T ss_pred             EEeEEEecC
Confidence            999987654

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=7.1e-06  Score=58.84  Aligned_cols=87  Identities=17%  Similarity=0.164  Sum_probs=52.9

Q ss_pred             eeccCCeEEEEEEeeC-CCCC--eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        156 TAEENENVTLSCRATG-SPVP--KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       156 ~~~~G~~~~l~C~~~g-~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      .+.+|+.++|.|.+.+ .|.+  .|.|++++..+..............+.     ..+.|.+.....++...|+|.|++.
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~-----~~s~l~~~~~~~D~g~~ltC~a~~~   86 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLET-----KSLEVTFTPVIEDIGKVLVCRAKLH   86 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEE-----EEEEEEECCCGGGTTCEEEEEEEEC
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcce-----eeEEEEccCChHHCCcEEEEEEEcC
Confidence            3679999999999965 6654  588999988765433222111111221     1345666544444444899999987


Q ss_pred             Cce-------EEEEEEEEEeec
Q psy12695        233 AGE-------VFTNISLNVIKV  247 (369)
Q Consensus       233 ~g~-------~~~~~~l~v~~~  247 (369)
                      .+.       ......|.|...
T Consensus        87 ~~~~~~~~~~~~t~~~L~V~~~  108 (109)
T d1vcaa1          87 IDEMDSVPTVRQAVKELQVYIS  108 (109)
T ss_dssp             SCCCTTSCSEEEEEEECCEECC
T ss_pred             cCCccccccccceeEEeEEEeC
Confidence            644       233445666543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.20  E-value=1.3e-06  Score=70.24  Aligned_cols=93  Identities=23%  Similarity=0.301  Sum_probs=71.9

Q ss_pred             CceEEEecCCCCCccCC-CCCCCccEEEeecceeCh-hhccCCcccCeeeccCCcccccCCcccccccccccccccccce
Q psy12695         46 GKETVLCKAKNFTTIPE-QLDVGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPI  123 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~-~~~~~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l  123 (369)
                      ..+.+++.+++++.++. ....++++|+|++|+|.. ..|.++++|+.|++++|.+..++.  |.++++|+.|++++|.+
T Consensus        41 ~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~~~~  118 (199)
T d2omxa2          41 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI  118 (199)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECCSSCC
T ss_pred             CCCEEECCCCCCCCccccccCCCcCcCccccccccCcccccCCcccccccccccccccccc--ccccccccccccccccc
Confidence            35679999999988763 124689999999999763 348899999999999999988864  78899999999999988


Q ss_pred             ecccCCcccccCcCccccc
Q psy12695        124 QKITHEAFINVPKLNLEDF  142 (369)
Q Consensus       124 ~~~~~~~f~~l~~l~~~~~  142 (369)
                      ..+.  .+..+++|...++
T Consensus       119 ~~~~--~~~~l~~L~~L~l  135 (199)
T d2omxa2         119 TDID--PLKNLTNLNRLEL  135 (199)
T ss_dssp             CCCG--GGTTCTTCSEEEC
T ss_pred             cccc--ccchhhhhHHhhh
Confidence            8765  3555666554443

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.18  E-value=6.3e-06  Score=60.15  Aligned_cols=84  Identities=23%  Similarity=0.288  Sum_probs=55.2

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCC--CCeEEEEeC--Ce---EeeecccccccCCcceEEEEe--ecceeeEEEcccC
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSP--VPKIKWIFK--EK---IIANISSGLANMNKRQYIIKT--INSLSNLTIVAVT  218 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~--~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~  218 (369)
                      +...+..+.+.+|++++|.|..++..  ...+.|+++  ++   .+.............++....  ..+...|.|.+++
T Consensus         4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~   83 (120)
T d1hxma1           4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (120)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccc
Confidence            34456778899999999999997654  346999973  22   122111111111223454433  3345789999999


Q ss_pred             CCCCEEEEEEEEe
Q psy12695        219 MSDSGIYTCRAKN  231 (369)
Q Consensus       219 ~~D~G~Y~C~a~n  231 (369)
                      .+|+|.|.|....
T Consensus        84 ~~Dsa~YyCA~~~   96 (120)
T d1hxma1          84 ERDEGSYYCACDT   96 (120)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ccCCceeecCccc
Confidence            9999999998654

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=3e-06  Score=61.00  Aligned_cols=79  Identities=18%  Similarity=0.251  Sum_probs=45.8

Q ss_pred             CeeeccCCeEEEEEEeeCCCC---CeEEEE--eCCeEe-eecccc--ccc--CCcceEEEEeecceeeEEEcccCCCCCE
Q psy12695        154 DVTAEENENVTLSCRATGSPV---PKIKWI--FKEKII-ANISSG--LAN--MNKRQYIIKTINSLSNLTIVAVTMSDSG  223 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~---p~i~W~--~~~~~~-~~~~~~--~~~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G  223 (369)
                      .+.+..|++++|.|.+...+.   ..+.|+  ++.... .....+  ...  ....+.......+...|.|.+++.+|+|
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G   82 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG   82 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCE
Confidence            367889999999999864332   234444  333221 111000  000  0111111223345678999999999999


Q ss_pred             EEEEEEEeC
Q psy12695        224 IYTCRAKNG  232 (369)
Q Consensus       224 ~Y~C~a~n~  232 (369)
                      .|.|.+...
T Consensus        83 ~Y~C~V~~~   91 (110)
T d1ncna_          83 LYQCIIHHK   91 (110)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEec
Confidence            999998543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.15  E-value=1.1e-06  Score=76.99  Aligned_cols=73  Identities=21%  Similarity=0.254  Sum_probs=45.0

Q ss_pred             EEEecCCCCCccCCCCCCCccEEEeecceeChhhccCCcccCeeeccCCcccccCCcccccccccccccccccceeccc
Q psy12695         49 TVLCKAKNFTTIPEQLDVGTQVLDLSDNFLDRYTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSGNPIQKIT  127 (369)
Q Consensus        49 ~~~c~~~~l~~ip~~~~~~~~~L~l~~n~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~  127 (369)
                      ...+..+.+..++. +++++++|+|++|+|..- -..+++|+.|+|++|+|+.||..    +.+|+.|+|++|+|+.++
T Consensus       268 ~~~~~~~~~~~~~~-~~~~L~~L~Ls~N~l~~l-p~~~~~L~~L~L~~N~L~~l~~~----~~~L~~L~L~~N~L~~lp  340 (353)
T d1jl5a_         268 YLNASSNEIRSLCD-LPPSLEELNVSNNKLIEL-PALPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPLREFP  340 (353)
T ss_dssp             EEECCSSCCSEECC-CCTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC
T ss_pred             ccccccCccccccc-cCCCCCEEECCCCccCcc-ccccCCCCEEECCCCcCCccccc----cCCCCEEECcCCcCCCCC
Confidence            34444455555543 345677777777776521 13456777777777777777542    346777777777777765

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=2.1e-06  Score=61.27  Aligned_cols=79  Identities=32%  Similarity=0.426  Sum_probs=50.4

Q ss_pred             CeeeccCCeEEEEEEeeCCCC----CeEEEEeCCeEeeecccccccCC---cceEEEEeecceeeEEEcccCCCCCEEEE
Q psy12695        154 DVTAEENENVTLSCRATGSPV----PKIKWIFKEKIIANISSGLANMN---KRQYIIKTINSLSNLTIVAVTMSDSGIYT  226 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~----p~i~W~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  226 (369)
                      .+++..|+.++|.|.......    ..+.|.+++..+...........   ..+... ...+..+|.|.+++.+|+|.|.
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~-~~~g~~sL~I~~v~~~D~G~Y~   81 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIF-DITNNLSIVILALRPSDEGTYE   81 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEE-ESTTTTEEEECSCCGGGCEEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeee-ccCCcEEEEECcCChHHCeEEE
Confidence            467899999999998754322    24778777765433222111000   112222 2234568999999999999999


Q ss_pred             EEEEeCC
Q psy12695        227 CRAKNGA  233 (369)
Q Consensus       227 C~a~n~~  233 (369)
                      |.+.+..
T Consensus        82 C~V~~~~   88 (105)
T d1dr9a1          82 CVVLKYE   88 (105)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            9997654

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2e-06  Score=63.10  Aligned_cols=82  Identities=22%  Similarity=0.280  Sum_probs=50.1

Q ss_pred             CCCeeeccCCeEEEEEEeeCCC-------CCeEEEEeCCeEe------eecccccc--cCCcceEEEE--eecceeeEEE
Q psy12695        152 TPDVTAEENENVTLSCRATGSP-------VPKIKWIFKEKII------ANISSGLA--NMNKRQYIIK--TINSLSNLTI  214 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p-------~p~i~W~~~~~~~------~~~~~~~~--~~~~~~~~~~--~~~~~~~L~I  214 (369)
                      +..+++.+|+.|+|.|.+....       ...+.|++....-      ........  .....++.+.  ...+...|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            5678999999999999985211       1247788754221      11011100  1112233332  2344678999


Q ss_pred             cccCCCCCEEEEEEEEeCC
Q psy12695        215 VAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       215 ~~v~~~D~G~Y~C~a~n~~  233 (369)
                      .+++.+|+|.|.|.+....
T Consensus        88 ~~v~~~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKGN  106 (121)
T ss_dssp             CSCCGGGCEEEEEEEEETT
T ss_pred             CCCChHHCEEEEEEEEeCC
Confidence            9999999999999986543

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.12  E-value=2.9e-07  Score=64.68  Aligned_cols=80  Identities=23%  Similarity=0.396  Sum_probs=50.2

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCC--eE---eeecccccccCCcceEEEE--eecceeeEEEcccCCCCCEEEE
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKE--KI---IANISSGLANMNKRQYIIK--TINSLSNLTIVAVTMSDSGIYT  226 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~  226 (369)
                      .++|.+|++++|.|...+. ...+.|+++.  +.   +.............++...  .......|.|.+++.+|+|.|.
T Consensus         2 slsV~eG~~vtL~C~~~~~-~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   80 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKTS-INNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF   80 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSSC-EEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred             CceECCCCCEEEEEEEeCC-cccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence            4678999999999988653 4579999842  21   1111111111112233222  2233467999999999999999


Q ss_pred             EEEEeCCc
Q psy12695        227 CRAKNGAG  234 (369)
Q Consensus       227 C~a~n~~g  234 (369)
                      |.+....|
T Consensus        81 CA~~~~~g   88 (96)
T d1ymmd1          81 CATDTTSG   88 (96)
T ss_dssp             EEEEETTS
T ss_pred             EeEecCCC
Confidence            99876554

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.12  E-value=4e-06  Score=60.73  Aligned_cols=82  Identities=17%  Similarity=0.244  Sum_probs=51.7

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCe-----Eeeeccc-cc--ccCCcceEEEE-eecceeeEEEcccCCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK-----IIANISS-GL--ANMNKRQYIIK-TINSLSNLTIVAVTMS  220 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~-----~~~~~~~-~~--~~~~~~~~~~~-~~~~~~~L~I~~v~~~  220 (369)
                      +.|..+.+.+|++++|.|... .....+.||++..     .+..... ..  ......++... .......|.|.+++.+
T Consensus         4 QsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (114)
T d1ogae1           4 QSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKN   82 (114)
T ss_dssp             CSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSC
T ss_pred             EcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcC
Confidence            446778899999999999975 3456799998431     1111111 10  01111222222 2234567999999999


Q ss_pred             CCEEEEEEEEeC
Q psy12695        221 DSGIYTCRAKNG  232 (369)
Q Consensus       221 D~G~Y~C~a~n~  232 (369)
                      |+|.|.|.+...
T Consensus        83 DSa~YyCa~~~~   94 (114)
T d1ogae1          83 PTAFYLCASSSR   94 (114)
T ss_dssp             CCEEEEEEEESS
T ss_pred             CceeEEEeeccC
Confidence            999999987643

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=6.8e-06  Score=57.79  Aligned_cols=80  Identities=13%  Similarity=0.142  Sum_probs=50.8

Q ss_pred             CCccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        146 PNIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       146 p~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      |.+...|. ..|..|++|+|.|... .+...+.|++++..........        ..........+.|.+|+..|+|.|
T Consensus         8 PsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~--------~~~~~~~~a~F~l~~vt~~~~G~Y   77 (99)
T d1ucta1           8 PFISAKSS-PVIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRR--------LKFWNETDPEFVIDHMDANKAGRY   77 (99)
T ss_dssp             CCEEESSC-SEEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEE--------CC----CCCEEEECSCCGGGCEEE
T ss_pred             CEEEecCC-CceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceecccc--------ccCCCCceEEEEecCCCHHHCceE
Confidence            44555554 4578999999999875 3455788888664221110000        000112234689999999999999


Q ss_pred             EEEEEeCCce
Q psy12695        226 TCRAKNGAGE  235 (369)
Q Consensus       226 ~C~a~n~~g~  235 (369)
                      .|...+..+.
T Consensus        78 ~C~y~~~~~~   87 (99)
T d1ucta1          78 QCQYRIGHYR   87 (99)
T ss_dssp             EEEEEETTTE
T ss_pred             EEEEECCCcc
Confidence            9999887653

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=1.3e-05  Score=58.27  Aligned_cols=80  Identities=18%  Similarity=0.256  Sum_probs=51.2

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCC---eEEEEeCC--eE---eee-cc-ccccc-CCcceEEEEeecceeeEEEcccCCC
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVP---KIKWIFKE--KI---IAN-IS-SGLAN-MNKRQYIIKTINSLSNLTIVAVTMS  220 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p---~i~W~~~~--~~---~~~-~~-~~~~~-~~~~~~~~~~~~~~~~L~I~~v~~~  220 (369)
                      |..+.+.+|++++|.|...+...+   .+.|+++.  +.   +.. .. ..... ..+.............|.|.+++.+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            566788999999999998543333   37899843  21   111 11 11111 1122223445566778999999999


Q ss_pred             CCEEEEEEEEe
Q psy12695        221 DSGIYTCRAKN  231 (369)
Q Consensus       221 D~G~Y~C~a~n  231 (369)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (117)
T d1dqta_          86 DTGLYLCKVEL   96 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCEeEEEEEec
Confidence            99999998753

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.06  E-value=4.6e-06  Score=60.33  Aligned_cols=80  Identities=16%  Similarity=0.285  Sum_probs=50.8

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCCCeEEEEeC--CeEe---ee-ccccc--ccCCcceEEE-EeecceeeEEEcccCCCC
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFK--EKII---AN-ISSGL--ANMNKRQYII-KTINSLSNLTIVAVTMSD  221 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~--~~~~---~~-~~~~~--~~~~~~~~~~-~~~~~~~~L~I~~v~~~D  221 (369)
                      .|..+.+.+|++++|.|...+. ...+.||++  ++..   .. .....  ......++.. ........|.|.+++.+|
T Consensus         5 ~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (113)
T d2ntsp1           5 TPRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGD   83 (113)
T ss_dssp             ECSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGG
T ss_pred             CCCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCccc
Confidence            3567889999999999997553 457999983  3221   11 00000  0111222322 223345689999999999


Q ss_pred             CEEEEEEEEe
Q psy12695        222 SGIYTCRAKN  231 (369)
Q Consensus       222 ~G~Y~C~a~n  231 (369)
                      +|.|.|.+..
T Consensus        84 sa~YyCA~~~   93 (113)
T d2ntsp1          84 SALYLCASSL   93 (113)
T ss_dssp             CEEEEEEEES
T ss_pred             ceeeeeeeeC
Confidence            9999998764

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.05  E-value=5.7e-06  Score=60.03  Aligned_cols=83  Identities=14%  Similarity=0.217  Sum_probs=50.5

Q ss_pred             CCCCeeeccCCeEEEEEEeeC---CCC---CeEEEEeCCe----Eeeeccccc--ccCCcceEEEE--eecceeeEEEcc
Q psy12695        151 ITPDVTAEENENVTLSCRATG---SPV---PKIKWIFKEK----IIANISSGL--ANMNKRQYIIK--TINSLSNLTIVA  216 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g---~p~---p~i~W~~~~~----~~~~~~~~~--~~~~~~~~~~~--~~~~~~~L~I~~  216 (369)
                      .|..+.+.+|+.|.|.|.+..   .+.   -.+.|++...    .+.......  ......++.+.  ...+...|.|.+
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   85 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD   85 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence            467889999999999999852   111   2356776431    111111110  11112233332  234566899999


Q ss_pred             cCCCCCEEEEEEEEeCC
Q psy12695        217 VTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       217 v~~~D~G~Y~C~a~n~~  233 (369)
                      ++.+|+|.|.|.+....
T Consensus        86 v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          86 LKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             CCGGGCEEEEEEEECC-
T ss_pred             CChhHCEEEEEEEEeCC
Confidence            99999999999986543

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=8e-06  Score=59.00  Aligned_cols=79  Identities=18%  Similarity=0.322  Sum_probs=49.3

Q ss_pred             CeeeccCCeEEEEEEeeC--CCCCeEEEEeCC--e---Eeeeccccccc---CCcceEEEEe--ecceeeEEEcccCCCC
Q psy12695        154 DVTAEENENVTLSCRATG--SPVPKIKWIFKE--K---IIANISSGLAN---MNKRQYIIKT--INSLSNLTIVAVTMSD  221 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g--~p~p~i~W~~~~--~---~~~~~~~~~~~---~~~~~~~~~~--~~~~~~L~I~~v~~~D  221 (369)
                      ...+.+|++++|.|...+  .....+.|++..  .   .+.........   ....++.+..  ..+...|+|.+++.+|
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D   87 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED   87 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence            366789999999998754  234568899742  1   12111111111   1122454433  2344679999999999


Q ss_pred             CEEEEEEEEeC
Q psy12695        222 SGIYTCRAKNG  232 (369)
Q Consensus       222 ~G~Y~C~a~n~  232 (369)
                      +|.|.|.+...
T Consensus        88 sg~Y~Cav~~~   98 (113)
T d1smoa_          88 SGLYQCVIYQP   98 (113)
T ss_dssp             CEEEEEEECCT
T ss_pred             CceEEEEEECC
Confidence            99999987543

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.6e-05  Score=55.29  Aligned_cols=76  Identities=14%  Similarity=0.159  Sum_probs=49.9

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEE
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYT  226 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  226 (369)
                      .+...|. ..+..|++|+|.|+... +...+.|++++...........          .......+.|.+|+..|+|.|.
T Consensus         6 sLsa~P~-~~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~----------~~~~~a~F~i~~v~~~~~G~Y~   73 (95)
T d1olla1           6 FIWAEPH-FMVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPP----------ERINKVKFYIPDMNSRMAGQYS   73 (95)
T ss_dssp             EEEEESC-SEEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSC----------TTCCEEEEEESSCCGGGCEEEE
T ss_pred             EEEeeCC-CcccCCCcEEEEEecCC-CccEEEEEECCCCcceeEEccC----------CCccEEEEEEeeeecCCCceEE
Confidence            3333443 45779999999998743 3457888888764332111100          0112357999999999999999


Q ss_pred             EEEEeCCc
Q psy12695        227 CRAKNGAG  234 (369)
Q Consensus       227 C~a~n~~g  234 (369)
                      |...+..+
T Consensus        74 C~y~~~~~   81 (95)
T d1olla1          74 CIYRVGEL   81 (95)
T ss_dssp             EEEEETTE
T ss_pred             EEeCCCCC
Confidence            99876543

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.00  E-value=1.4e-05  Score=58.23  Aligned_cols=83  Identities=17%  Similarity=0.275  Sum_probs=53.0

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeCCC--CCeEEEEeCC--e---Eeeeccc-ccc---cCCcceEEEEe--ecceeeEEEc
Q psy12695        149 RPITPDVTAEENENVTLSCRATGSP--VPKIKWIFKE--K---IIANISS-GLA---NMNKRQYIIKT--INSLSNLTIV  215 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~---~~~~~~~-~~~---~~~~~~~~~~~--~~~~~~L~I~  215 (369)
                      .+.+..+++.+|++++|.|.+.+..  ...+.|+++.  +   .+..... ...   .....++....  ......|.|.
T Consensus         5 ~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~   84 (120)
T d1ypzf1           5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIY   84 (120)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEEC
T ss_pred             EcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccc
Confidence            3455678888999999999986643  3468999843  1   1221111 110   11223444433  2345679999


Q ss_pred             ccCCCCCEEEEEEEEe
Q psy12695        216 AVTMSDSGIYTCRAKN  231 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n  231 (369)
                      +++.+|+|.|.|....
T Consensus        85 ~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          85 SLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             SCCGGGCSEEEEEECC
T ss_pred             ccccccceeEEEEEcC
Confidence            9999999999998754

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.1e-05  Score=58.80  Aligned_cols=80  Identities=14%  Similarity=0.234  Sum_probs=49.7

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCC---eEEEEeCCe----Eee---ecccccccC-CcceEEEEeecceeeEEEcccCCC
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVP---KIKWIFKEK----IIA---NISSGLANM-NKRQYIIKTINSLSNLTIVAVTMS  220 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p---~i~W~~~~~----~~~---~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~  220 (369)
                      |..+.+.+|+.++|.|.......+   .+.|+++..    .+.   ......... .+.............|.|.+++.+
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM   85 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence            566788999999999998543333   488998431    111   001111111 111112233445668999999999


Q ss_pred             CCEEEEEEEEe
Q psy12695        221 DSGIYTCRAKN  231 (369)
Q Consensus       221 D~G~Y~C~a~n  231 (369)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (118)
T d1i8lc_          86 DTGLYICKVEL   96 (118)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCEEEEEeEec
Confidence            99999998754

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.99  E-value=7.8e-06  Score=58.94  Aligned_cols=81  Identities=16%  Similarity=0.325  Sum_probs=51.3

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---Eeeec-ccc---cccCCcceEEEE-eecceeeEEEcccCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANI-SSG---LANMNKRQYIIK-TINSLSNLTIVAVTM  219 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~-~~~---~~~~~~~~~~~~-~~~~~~~L~I~~v~~  219 (369)
                      +.|..+.+.+|++++|.|...+ ....+.||++.  +   .+... ...   .......++... .......|.|.+++.
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (112)
T d1kgce1           4 QSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQ   82 (112)
T ss_dssp             EECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCG
T ss_pred             ECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCc
Confidence            3467788999999999998654 34579999842  1   11111 110   011122233332 223456899999999


Q ss_pred             CCCEEEEEEEEe
Q psy12695        220 SDSGIYTCRAKN  231 (369)
Q Consensus       220 ~D~G~Y~C~a~n  231 (369)
                      +|+|.|.|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (112)
T d1kgce1          83 EDSAVYLCASSL   94 (112)
T ss_dssp             GGCEEEEEEEES
T ss_pred             CCCEEEEEeeeC
Confidence            999999998753

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.99  E-value=2.3e-05  Score=57.28  Aligned_cols=82  Identities=22%  Similarity=0.365  Sum_probs=53.7

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCC--CCeEEEEeCC--e---Eeeecc-ccc--c--cCCcceEEEEee--cceeeEEEc
Q psy12695        150 PITPDVTAEENENVTLSCRATGSP--VPKIKWIFKE--K---IIANIS-SGL--A--NMNKRQYIIKTI--NSLSNLTIV  215 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p--~p~i~W~~~~--~---~~~~~~-~~~--~--~~~~~~~~~~~~--~~~~~L~I~  215 (369)
                      +++..+++.+|++++|.|.++|..  ...+.|+++.  +   .+.... ...  .  .....+|.+...  .....|.|.
T Consensus         6 Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~   85 (123)
T d1hxmb1           6 QPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIH   85 (123)
T ss_dssp             CCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEEC
T ss_pred             CCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccc
Confidence            344567888999999999998754  3468999842  1   121111 111  1  112345665543  345679999


Q ss_pred             ccCCCCCEEEEEEEEe
Q psy12695        216 AVTMSDSGIYTCRAKN  231 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n  231 (369)
                      +++.+|+|.|.|....
T Consensus        86 ~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          86 NVEKQDIATYYCALWE  101 (123)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             ccccccCcEEEEeeeC
Confidence            9999999999998754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.99  E-value=3.1e-06  Score=69.49  Aligned_cols=73  Identities=21%  Similarity=0.187  Sum_probs=60.4

Q ss_pred             CceEEEecCCCCCccCC-CCCCCccEEEeecceeCh-hhccCCcccCeeeccCCcccccCCcccccccccccccccc
Q psy12695         46 GKETVLCKAKNFTTIPE-QLDVGTQVLDLSDNFLDR-YTFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG  120 (369)
Q Consensus        46 ~~~~~~c~~~~l~~ip~-~~~~~~~~L~l~~n~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  120 (369)
                      ..+.+.+.++.+..++. .--..++.|+|++|+|.. ..|.++++|++|+|++|+|+.+++  |.++++|+.|+|++
T Consensus       152 ~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         152 NLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             ccccccccccccccchhhcccccceecccCCCccCCChhhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            35689999988876554 112579999999999874 358899999999999999999975  88999999999975

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.99  E-value=8.4e-06  Score=58.85  Aligned_cols=82  Identities=11%  Similarity=0.164  Sum_probs=52.0

Q ss_pred             cCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--eE---eeeccccc----ccCCcceEEEEeecceeeEEEcccCC
Q psy12695        149 RPITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--KI---IANISSGL----ANMNKRQYIIKTINSLSNLTIVAVTM  219 (369)
Q Consensus       149 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~L~I~~v~~  219 (369)
                      .+.|..+.+.+|++++|.|.... ....+.||++.  +.   +.......    .......+..........|.|.+++.
T Consensus         4 ~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   82 (113)
T d1j8he1           4 TQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAST   82 (113)
T ss_dssp             EESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCG
T ss_pred             EccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCcc
Confidence            34567788999999999998643 34578999832  21   11111111    11112223222334456899999999


Q ss_pred             CCCEEEEEEEEe
Q psy12695        220 SDSGIYTCRAKN  231 (369)
Q Consensus       220 ~D~G~Y~C~a~n  231 (369)
                      +|+|.|.|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (113)
T d1j8he1          83 NQTSMYLCASSS   94 (113)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CCcccEEeeEcc
Confidence            999999998864

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.95  E-value=5e-06  Score=60.07  Aligned_cols=84  Identities=12%  Similarity=0.262  Sum_probs=52.5

Q ss_pred             ccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCe-----Eeee-cccccc--cCCcceEEEE-eecceeeEEEcccC
Q psy12695        148 IRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK-----IIAN-ISSGLA--NMNKRQYIIK-TINSLSNLTIVAVT  218 (369)
Q Consensus       148 i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~-----~~~~-~~~~~~--~~~~~~~~~~-~~~~~~~L~I~~v~  218 (369)
                      +.+.|..+.+.+|++++|.|..... ...+.||++..     .+.. .+....  .....++... .......|.|.+++
T Consensus         4 VtQ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (113)
T d1nfdb1           4 VVQSPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALE   82 (113)
T ss_dssp             CEEECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCC
T ss_pred             EEEcCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccC
Confidence            4455778889999999999987543 45799998531     1111 111110  0111233222 22334579999999


Q ss_pred             CCCCEEEEEEEEeC
Q psy12695        219 MSDSGIYTCRAKNG  232 (369)
Q Consensus       219 ~~D~G~Y~C~a~n~  232 (369)
                      .+|+|.|.|.+...
T Consensus        83 ~~Dsa~YyCa~~~~   96 (113)
T d1nfdb1          83 LEDSAMYFCASSLR   96 (113)
T ss_dssp             GGGCEEECEEEESS
T ss_pred             cCCceeEEEEeecC
Confidence            99999999987543

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.92  E-value=9.1e-06  Score=58.57  Aligned_cols=80  Identities=13%  Similarity=0.243  Sum_probs=49.8

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--eE---eeec-cccc--c-cCCcceEEEEeecceeeEEEcccCCCC
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--KI---IANI-SSGL--A-NMNKRQYIIKTINSLSNLTIVAVTMSD  221 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~---~~~~-~~~~--~-~~~~~~~~~~~~~~~~~L~I~~v~~~D  221 (369)
                      .|..+.+.+|++++|.|..... ...+.||++.  +.   +... ....  . ......+..........|.|.++..+|
T Consensus         5 ~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (112)
T d2bnub1           5 TPKFQVLKTGQSMTLQCAQDMN-HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQ   83 (112)
T ss_dssp             ECSEEEEETTCCEEEEEEESSC-CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGG
T ss_pred             CCCeEEECCCCCEEEEEEEECC-ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHH
Confidence            4566789999999999987543 4679999832  21   1110 0000  0 111122222223334689999999999


Q ss_pred             CEEEEEEEEe
Q psy12695        222 SGIYTCRAKN  231 (369)
Q Consensus       222 ~G~Y~C~a~n  231 (369)
                      +|.|.|.+..
T Consensus        84 savYyCA~~~   93 (112)
T d2bnub1          84 TSVYFCASSY   93 (112)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEeecC
Confidence            9999998753

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.92  E-value=4.3e-06  Score=60.36  Aligned_cols=82  Identities=15%  Similarity=0.207  Sum_probs=50.9

Q ss_pred             CCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCe-----Eeeec-ccc--cccCCcceEEE-EeecceeeEEEcccCCCC
Q psy12695        151 ITPDVTAEENENVTLSCRATGSPVPKIKWIFKEK-----IIANI-SSG--LANMNKRQYII-KTINSLSNLTIVAVTMSD  221 (369)
Q Consensus       151 ~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~-----~~~~~-~~~--~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D  221 (369)
                      .|..+.+.+|++++|.|.... ....+.||++..     .+... ...  ........+.. ........|.|.+++.+|
T Consensus         4 sP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   82 (112)
T d2cdeb1           4 TPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSH   82 (112)
T ss_dssp             ECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTT
T ss_pred             CCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccc
Confidence            466788999999999998753 345799998431     11111 111  01111112222 122345679999999999


Q ss_pred             CEEEEEEEEeCC
Q psy12695        222 SGIYTCRAKNGA  233 (369)
Q Consensus       222 ~G~Y~C~a~n~~  233 (369)
                      +|.|.|.+....
T Consensus        83 sa~YyCA~~~~~   94 (112)
T d2cdeb1          83 TSQYLCASSENI   94 (112)
T ss_dssp             CSEEEEEEECSS
T ss_pred             cccEEEEEecCC
Confidence            999999886543

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.90  E-value=1.2e-05  Score=57.85  Aligned_cols=81  Identities=19%  Similarity=0.423  Sum_probs=51.7

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--e---Eeeeccccc----ccCCcceEEEEe-ecceeeEEEcccCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--K---IIANISSGL----ANMNKRQYIIKT-INSLSNLTIVAVTM  219 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~---~~~~~~~~~----~~~~~~~~~~~~-~~~~~~L~I~~v~~  219 (369)
                      +.|..+.+.+|++++|.|...+. ...+.||++.  +   .+.......    ......++.... ......|+|.+++.
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~   82 (111)
T d2esve1           4 QFPSHSVIEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAEL   82 (111)
T ss_dssp             EECSEEEEETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCG
T ss_pred             ECCCEEEECCCCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCccc
Confidence            34677889999999999986543 4579999742  1   121111110    112233444332 22346899999999


Q ss_pred             CCCEEEEEEEEe
Q psy12695        220 SDSGIYTCRAKN  231 (369)
Q Consensus       220 ~D~G~Y~C~a~n  231 (369)
                      +|+|.|.|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (111)
T d2esve1          83 EDSGVYFCASSQ   94 (111)
T ss_dssp             GGCEEEEEEEES
T ss_pred             CCCceEEEeeeC
Confidence            999999998653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=1.3e-06  Score=67.85  Aligned_cols=60  Identities=27%  Similarity=0.295  Sum_probs=48.5

Q ss_pred             hhhccCCcccCeeeccCCcccccCC--cccccccccccccccccceecccCCcccccCcCcc
Q psy12695         80 RYTFRKLINLVELDLSYNQIQFVPS--HILDSILELRELKLSGNPIQKITHEAFINVPKLNL  139 (369)
Q Consensus        80 ~~~f~~l~~L~~L~Ls~N~l~~i~~--~~f~~l~~L~~L~L~~N~l~~~~~~~f~~l~~l~~  139 (369)
                      ...+.++++|++|+|++|+|+.++.  ..|..+++|+.|+|++|.|+.++...+.....+..
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~  119 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE  119 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSS
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccce
Confidence            4567889999999999999999864  45678899999999999999998755554444433

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=2.4e-05  Score=55.85  Aligned_cols=81  Identities=14%  Similarity=0.283  Sum_probs=51.5

Q ss_pred             CCeeeccCCeEEEEEEeeCC--CCCeEEEEeC--CeE---eeeccccc-c--cCCcceEEEEe--ecceeeEEEcccCCC
Q psy12695        153 PDVTAEENENVTLSCRATGS--PVPKIKWIFK--EKI---IANISSGL-A--NMNKRQYIIKT--INSLSNLTIVAVTMS  220 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~--p~p~i~W~~~--~~~---~~~~~~~~-~--~~~~~~~~~~~--~~~~~~L~I~~v~~~  220 (369)
                      ....+.+|++++|.|..++.  ....+.|+++  ++.   +....... .  ..-+.++.+..  ..+...|+|.+++.+
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~e   82 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVT   82 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccC
Confidence            34678999999999998753  3446889984  221   11111111 0  01123455443  244567999999999


Q ss_pred             CCEEEEEEEEeCC
Q psy12695        221 DSGIYTCRAKNGA  233 (369)
Q Consensus       221 D~G~Y~C~a~n~~  233 (369)
                      |+|.|.|......
T Consensus        83 Dsa~YyCa~~~~~   95 (110)
T d1u9ka_          83 DSGLYRCVIYHPP   95 (110)
T ss_dssp             GCEEEEEEEECTT
T ss_pred             CCEEEEEEEeCCC
Confidence            9999999875443

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.76  E-value=7.6e-05  Score=53.59  Aligned_cols=78  Identities=19%  Similarity=0.333  Sum_probs=49.0

Q ss_pred             CeeeccCCeEEEEEEeeCCCC----CeEEEEeC--CeE---eeec--ccccc--cCCcceEEEEe--ecceeeEEEcccC
Q psy12695        154 DVTAEENENVTLSCRATGSPV----PKIKWIFK--EKI---IANI--SSGLA--NMNKRQYIIKT--INSLSNLTIVAVT  218 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~----p~i~W~~~--~~~---~~~~--~~~~~--~~~~~~~~~~~--~~~~~~L~I~~v~  218 (369)
                      ...+++|++++|.|.++|...    ..+.|+++  ++.   +...  .....  ..-+.||.+..  ..+...|.|.+++
T Consensus         9 ~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~   88 (120)
T d2agjh1           9 PTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLD   88 (120)
T ss_dssp             CSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCC
T ss_pred             CeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeee
Confidence            345788999999999887432    35889974  221   1111  11000  01134565543  2345679999999


Q ss_pred             CCCCEEEEEEEEe
Q psy12695        219 MSDSGIYTCRAKN  231 (369)
Q Consensus       219 ~~D~G~Y~C~a~n  231 (369)
                      .+|++.|.|....
T Consensus        89 ~eDsAvYyCAr~~  101 (120)
T d2agjh1          89 PVDTATYYCARTS  101 (120)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             eccceEEeeEecC
Confidence            9999999997543

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.68  E-value=7.2e-05  Score=53.06  Aligned_cols=80  Identities=15%  Similarity=0.302  Sum_probs=50.5

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeEe---eecc-ccc-c--cCCcceEEEEe--ecceeeEEEcccCCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVP--KIKWIFK--EKII---ANIS-SGL-A--NMNKRQYIIKT--INSLSNLTIVAVTMS  220 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~~---~~~~-~~~-~--~~~~~~~~~~~--~~~~~~L~I~~v~~~  220 (369)
                      ...+.+|++++|.|.++|....  .+.|+++  ++.+   .... ... .  ..-+.|+.+..  ..+...|.|.+++.+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~e   88 (116)
T d7fabh1           9 PGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAA   88 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccc
Confidence            3457889999999999986654  4889874  2211   1101 110 0  11123454443  334567999999999


Q ss_pred             CCEEEEEEEEeCC
Q psy12695        221 DSGIYTCRAKNGA  233 (369)
Q Consensus       221 D~G~Y~C~a~n~~  233 (369)
                      |++.|.|......
T Consensus        89 DtAvYyCAr~~~~  101 (116)
T d7fabh1          89 DTAVYYCARNLIA  101 (116)
T ss_dssp             GCEEEEEEEECSS
T ss_pred             cceEEEeeeecCC
Confidence            9999999864433

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=4.9e-05  Score=52.74  Aligned_cols=65  Identities=18%  Similarity=0.336  Sum_probs=45.7

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ...+..|++|+|.|+......-.+.|+|++.......             ........+.|.+++.+|+|.|.|....
T Consensus        13 ~~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~-------------~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   77 (96)
T d1ucta2          13 GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQH-------------QSGEHPANFSLGPVDLNVSGIYRCYGWY   77 (96)
T ss_dssp             CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSE-------------EECSSSEEEECCSCCGGGCEEEEEEEEC
T ss_pred             CCccCCCCeEEEEEeCCCCCceEEEEEECCcccceEE-------------cCCCcccEEEEeccccccCcEEEEEEEc
Confidence            3478999999999986434445688999875322100             1112345789999999999999998654

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.62  E-value=9.2e-05  Score=52.82  Aligned_cols=75  Identities=23%  Similarity=0.358  Sum_probs=48.8

Q ss_pred             eeeccCCeEEEEEEeeCCCCC--eEEEEeCC--eEe---e--eccccc--ccCCcceEEEEe--ecceeeEEEcccCCCC
Q psy12695        155 VTAEENENVTLSCRATGSPVP--KIKWIFKE--KII---A--NISSGL--ANMNKRQYIIKT--INSLSNLTIVAVTMSD  221 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~--~~~---~--~~~~~~--~~~~~~~~~~~~--~~~~~~L~I~~v~~~D  221 (369)
                      -.+.+|++++|.|.++|....  .+.|+++.  +.+   .  ......  ...-+.||.+..  ..+...|.|.+++.+|
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eD   89 (120)
T d1dn0b1          10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD   89 (120)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccccc
Confidence            457899999999999987654  48899842  211   1  111100  011134565544  3345679999999999


Q ss_pred             CEEEEEEE
Q psy12695        222 SGIYTCRA  229 (369)
Q Consensus       222 ~G~Y~C~a  229 (369)
                      ++.|.|..
T Consensus        90 tA~YYCAr   97 (120)
T d1dn0b1          90 TAVYYCAR   97 (120)
T ss_dssp             CEEEEEEE
T ss_pred             ccEEEEEe
Confidence            99999954

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.62  E-value=0.00026  Score=50.40  Aligned_cols=77  Identities=19%  Similarity=0.444  Sum_probs=49.7

Q ss_pred             eeeccCCeEEEEEEeeCCCCC--eEEEEeCC--e---Eeeeccc-cc-c--cCCcceEEEEe--ecceeeEEEcccCCCC
Q psy12695        155 VTAEENENVTLSCRATGSPVP--KIKWIFKE--K---IIANISS-GL-A--NMNKRQYIIKT--INSLSNLTIVAVTMSD  221 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~--~---~~~~~~~-~~-~--~~~~~~~~~~~--~~~~~~L~I~~v~~~D  221 (369)
                      -.+.+|++++|.|.++|....  .+.|+++.  +   .+..... .. .  ..-+.|+.+..  ..+...|.|.+++.+|
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD   88 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD   88 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence            467899999999999986654  48898743  1   1111111 10 0  11123555543  2345579999999999


Q ss_pred             CEEEEEEEEe
Q psy12695        222 SGIYTCRAKN  231 (369)
Q Consensus       222 ~G~Y~C~a~n  231 (369)
                      ++.|.|....
T Consensus        89 tA~YYCAr~~   98 (119)
T d1kxvc_          89 TAMYYCKPSL   98 (119)
T ss_dssp             CEEEEEEEEE
T ss_pred             cceEeeeecc
Confidence            9999997654

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.62  E-value=9.7e-05  Score=52.90  Aligned_cols=81  Identities=16%  Similarity=0.277  Sum_probs=51.8

Q ss_pred             CCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCC--eE---eeecc-cccc---cCCcceEEEEeecceeeEEEcccCCC
Q psy12695        150 PITPDVTAEENENVTLSCRATGSPVPKIKWIFKE--KI---IANIS-SGLA---NMNKRQYIIKTINSLSNLTIVAVTMS  220 (369)
Q Consensus       150 ~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~--~~---~~~~~-~~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~  220 (369)
                      +.|..+.+.+|++++|.|...+.....+.||++.  +.   +.... ....   .....++.... .....|.|..++.+
T Consensus         6 Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~-~~~~~l~l~~~~~~   84 (112)
T d1fo0b_           6 QNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATR-VTDTELRLQVANMS   84 (112)
T ss_dssp             EECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEE-EETTEEEEEEESCC
T ss_pred             eCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceecccccccccccccccccccc-ccccEEEEecCCcc
Confidence            4467788999999999999876656789999853  22   11111 1110   01122343332 22356888889999


Q ss_pred             CCEEEEEEEEe
Q psy12695        221 DSGIYTCRAKN  231 (369)
Q Consensus       221 D~G~Y~C~a~n  231 (369)
                      |++.|.|....
T Consensus        85 dsa~Y~Ca~~~   95 (112)
T d1fo0b_          85 QGRTLYCTCSA   95 (112)
T ss_dssp             SCEEEEEEEES
T ss_pred             CCccEEEEEec
Confidence            99999998643

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.60  E-value=0.00013  Score=52.14  Aligned_cols=79  Identities=13%  Similarity=0.310  Sum_probs=51.0

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCC--eEEEEeCC--eE------eeecccccc--cCCcceEEEEee--cceeeEEEccc
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVP--KIKWIFKE--KI------IANISSGLA--NMNKRQYIIKTI--NSLSNLTIVAV  217 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~--~~------~~~~~~~~~--~~~~~~~~~~~~--~~~~~L~I~~v  217 (369)
                      +....+.+|++++|.|.++|....  .+.|+++.  +.      +........  ..-+.|+.+...  .+...|.|.++
T Consensus         8 sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L   87 (122)
T d1vgeh1           8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSL   87 (122)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeeccccc
Confidence            445678999999999999987644  48898742  21      111111111  111235554432  34457999999


Q ss_pred             CCCCCEEEEEEEE
Q psy12695        218 TMSDSGIYTCRAK  230 (369)
Q Consensus       218 ~~~D~G~Y~C~a~  230 (369)
                      +.+|++.|.|...
T Consensus        88 ~~eDtA~YYCAr~  100 (122)
T d1vgeh1          88 RPEDTAVYYCARD  100 (122)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEEeec
Confidence            9999999999764

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00041  Score=47.79  Aligned_cols=73  Identities=19%  Similarity=0.398  Sum_probs=46.7

Q ss_pred             ccCCeEEEEEEeeC-CCCCeEEEEeCCeEeeecccccc-cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCce
Q psy12695        158 EENENVTLSCRATG-SPVPKIKWIFKEKIIANISSGLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE  235 (369)
Q Consensus       158 ~~G~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~  235 (369)
                      ..|+.++|.|.+.| .|.+.|.|+++++.+........ ......|.+     .+.|.+.   ..+...|.|.+....-.
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v-----~S~L~v~---~~~~~~~tC~V~h~~l~   85 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAV-----SSKLDFN---MTTNHSFMCLIKYGHLR   85 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEE-----EEEEEEE---TTSCEEEEEEEEETTCC
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEE-----EEEEEcc---CCccceEEEEEEecCCC
Confidence            45788999999987 79899999999877643222111 111223332     3456554   34567899999887654


Q ss_pred             EEE
Q psy12695        236 VFT  238 (369)
Q Consensus       236 ~~~  238 (369)
                      ...
T Consensus        86 ~~~   88 (95)
T d1dr9a2          86 VNQ   88 (95)
T ss_dssp             EEE
T ss_pred             CcE
Confidence            443

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.59  E-value=0.00021  Score=50.65  Aligned_cols=76  Identities=22%  Similarity=0.398  Sum_probs=48.5

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeEee---e---cccccc--cCCcceEEEEee--cceeeEEEcccCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVP--KIKWIFK--EKIIA---N---ISSGLA--NMNKRQYIIKTI--NSLSNLTIVAVTM  219 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~~~---~---~~~~~~--~~~~~~~~~~~~--~~~~~L~I~~v~~  219 (369)
                      ...+.+|++++|.|.++|....  .+.|+++  ++.+.   .   ......  ..-+.|+.+...  .+...|.|.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~   88 (115)
T d1f3dh1           9 PELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTF   88 (115)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCc
Confidence            3457899999999999986433  5899874  32211   1   111110  011235555432  3445799999999


Q ss_pred             CCCEEEEEEE
Q psy12695        220 SDSGIYTCRA  229 (369)
Q Consensus       220 ~D~G~Y~C~a  229 (369)
                      +|++.|.|..
T Consensus        89 eDtAvYYCAr   98 (115)
T d1f3dh1          89 EDSAVYYCAN   98 (115)
T ss_dssp             GGCEEEEEEE
T ss_pred             CCcEEEEEec
Confidence            9999999964

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.57  E-value=0.00043  Score=49.39  Aligned_cols=80  Identities=18%  Similarity=0.321  Sum_probs=51.2

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC--eEEEEeCC--eE---e---eecccccc--cCCcceEEEEe--ecceeeEEEcccCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVP--KIKWIFKE--KI---I---ANISSGLA--NMNKRQYIIKT--INSLSNLTIVAVTM  219 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~--~~---~---~~~~~~~~--~~~~~~~~~~~--~~~~~~L~I~~v~~  219 (369)
                      ...+.+|++++|.|.++|....  .+.|+++.  +.   +   ........  ..-+.|+.+..  ..+...|.|.+++.
T Consensus         9 ~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~   88 (123)
T d1mqkh_           9 GDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKS   88 (123)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeecc
Confidence            3457899999999999986644  48898742  21   1   11111111  11233555543  33445799999999


Q ss_pred             CCCEEEEEEEEeCC
Q psy12695        220 SDSGIYTCRAKNGA  233 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~  233 (369)
                      +|++.|.|......
T Consensus        89 eDtAvYYCAr~~~~  102 (123)
T d1mqkh_          89 EDTAMYYCVRHEYY  102 (123)
T ss_dssp             GGCEEEEEEEEETT
T ss_pred             CcccceeEEecCCC
Confidence            99999999865543

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.57  E-value=0.00013  Score=51.56  Aligned_cols=77  Identities=25%  Similarity=0.435  Sum_probs=49.4

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeE---eeecc-cccc---cCCcceEEEEee--cceeeEEEcccCCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVP--KIKWIFK--EKI---IANIS-SGLA---NMNKRQYIIKTI--NSLSNLTIVAVTMS  220 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~---~~~~~-~~~~---~~~~~~~~~~~~--~~~~~L~I~~v~~~  220 (369)
                      ...+.+|++++|.|.++|....  .+.|+++  ++.   +.... ....   ..-+.|+.+...  .+...|.|.+++.+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~e   88 (117)
T d1c5db1           9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE   88 (117)
T ss_dssp             CSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccC
Confidence            3457899999999999987653  5889874  221   11111 1110   112335555432  34467999999999


Q ss_pred             CCEEEEEEEE
Q psy12695        221 DSGIYTCRAK  230 (369)
Q Consensus       221 D~G~Y~C~a~  230 (369)
                      |++.|.|...
T Consensus        89 DtAvYYCAr~   98 (117)
T d1c5db1          89 DTAIYFCTRE   98 (117)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEecc
Confidence            9999999653

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.56  E-value=0.00034  Score=49.51  Aligned_cols=78  Identities=19%  Similarity=0.332  Sum_probs=49.8

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeEe------eecccccc--cCCcceEEEEe--ecceeeEEEcccC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP--KIKWIFK--EKII------ANISSGLA--NMNKRQYIIKT--INSLSNLTIVAVT  218 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~~------~~~~~~~~--~~~~~~~~~~~--~~~~~~L~I~~v~  218 (369)
                      ....+.+|++++|.|.++|....  .+.|+++  ++.+      ........  ..-+.|+.+..  ..+...|.|.+++
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~   87 (118)
T d2jelh1           8 GPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLT   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccc
Confidence            44567899999999999987654  4889874  2211      11111101  11123454443  3445679999999


Q ss_pred             CCCCEEEEEEEE
Q psy12695        219 MSDSGIYTCRAK  230 (369)
Q Consensus       219 ~~D~G~Y~C~a~  230 (369)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (118)
T d2jelh1          88 SEDSAIYYCARV   99 (118)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCcceeeeEEEe
Confidence            999999999643

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.56  E-value=0.00014  Score=51.50  Aligned_cols=78  Identities=17%  Similarity=0.330  Sum_probs=49.8

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC--eEEEEeCC--eE---eeec-cccc--c-cCCcceEEEEe--ecceeeEEEcccCCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVP--KIKWIFKE--KI---IANI-SSGL--A-NMNKRQYIIKT--INSLSNLTIVAVTMS  220 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~--~~---~~~~-~~~~--~-~~~~~~~~~~~--~~~~~~L~I~~v~~~  220 (369)
                      ...+.+|++++|.|.++|....  .+.|+++.  +.   +... +...  + ..-+.|+.+..  ..+...|.|.+++.+
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~e   88 (116)
T d1a2yb_           9 PGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTD   88 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeec
Confidence            3457899999999999986654  47898742  21   1111 1111  0 11133555543  334457999999999


Q ss_pred             CCEEEEEEEEe
Q psy12695        221 DSGIYTCRAKN  231 (369)
Q Consensus       221 D~G~Y~C~a~n  231 (369)
                      |++.|.|....
T Consensus        89 DTAvYYCAr~~   99 (116)
T d1a2yb_          89 DTARYYCARER   99 (116)
T ss_dssp             GCEEEEEEEES
T ss_pred             cceEEEEEEeC
Confidence            99999998543

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00029  Score=50.83  Aligned_cols=77  Identities=13%  Similarity=0.082  Sum_probs=45.5

Q ss_pred             eeeccCCeEEEEEEeeCCCCC--eE-EEEeCCe----Eee-ecc--cccc--cCCcceEEEEeecceeeEEEcccCCCCC
Q psy12695        155 VTAEENENVTLSCRATGSPVP--KI-KWIFKEK----IIA-NIS--SGLA--NMNKRQYIIKTINSLSNLTIVAVTMSDS  222 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p--~i-~W~~~~~----~~~-~~~--~~~~--~~~~~~~~~~~~~~~~~L~I~~v~~~D~  222 (369)
                      ..+.+|+.++|.|...+....  .+ .|++...    .+. ...  ....  ..++.++..........|.|.+++.+|+
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   89 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT   89 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence            457789999999998654433  23 4555321    111 111  1100  1112233333444556899999999999


Q ss_pred             EEEEEEEEe
Q psy12695        223 GIYTCRAKN  231 (369)
Q Consensus       223 G~Y~C~a~n  231 (369)
                      |.|.|.+..
T Consensus        90 avYyCa~~~   98 (118)
T d1yjdc1          90 DIYFCKIEV   98 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEec
Confidence            999998654

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.54  E-value=0.00048  Score=48.75  Aligned_cols=80  Identities=16%  Similarity=0.331  Sum_probs=51.4

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC--eEEEEeCC--eEe------eecccc-c-ccCCcceEEEEe--ecceeeEEEcccC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP--KIKWIFKE--KII------ANISSG-L-ANMNKRQYIIKT--INSLSNLTIVAVT  218 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~--~~~------~~~~~~-~-~~~~~~~~~~~~--~~~~~~L~I~~v~  218 (369)
                      ....+.+|++++|.|.++|....  .+.|+++.  +.+      ...... . ...-+.|+.+..  ..+...|.|.+++
T Consensus         7 g~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~   86 (117)
T d1um5h1           7 GPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLT   86 (117)
T ss_dssp             CCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccC
Confidence            44678899999999999986654  58898742  211      111111 0 011123555443  3445579999999


Q ss_pred             CCCCEEEEEEEEeC
Q psy12695        219 MSDSGIYTCRAKNG  232 (369)
Q Consensus       219 ~~D~G~Y~C~a~n~  232 (369)
                      .+|++.|.|.....
T Consensus        87 ~eDtAvYYCAr~~~  100 (117)
T d1um5h1          87 SEDSAVYYCARSSM  100 (117)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             CCcceEEEEeeccC
Confidence            99999999975443

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.53  E-value=0.00032  Score=49.68  Aligned_cols=79  Identities=14%  Similarity=0.337  Sum_probs=50.8

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeEe------eeccccc--ccCCcceEEEEe--ecceeeEEEcccCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVP--KIKWIFK--EKII------ANISSGL--ANMNKRQYIIKT--INSLSNLTIVAVTM  219 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~~------~~~~~~~--~~~~~~~~~~~~--~~~~~~L~I~~v~~  219 (369)
                      ...+.+|++++|.|.++|....  .+.|+++  ++.+      .......  ...-+.|+.+..  ..+...|.|.+++.
T Consensus         9 ~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~   88 (117)
T d1iqdb1           9 AEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRS   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCc
Confidence            4567899999999999986543  4889984  2221      1111110  011233555543  33455799999999


Q ss_pred             CCCEEEEEEEEeC
Q psy12695        220 SDSGIYTCRAKNG  232 (369)
Q Consensus       220 ~D~G~Y~C~a~n~  232 (369)
                      +|++.|.|.....
T Consensus        89 eDtAvYYCA~~~~  101 (117)
T d1iqdb1          89 DDTAVYYCAVPDP  101 (117)
T ss_dssp             GGCEEEEEEECSS
T ss_pred             CcceEEEEeEcCC
Confidence            9999999986543

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.51  E-value=0.00015  Score=51.27  Aligned_cols=78  Identities=17%  Similarity=0.303  Sum_probs=50.4

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC--eEEEEeCC--eE------eeecccccc--cCCcceEEEEe--ecceeeEEEcccCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVP--KIKWIFKE--KI------IANISSGLA--NMNKRQYIIKT--INSLSNLTIVAVTM  219 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~--~~------~~~~~~~~~--~~~~~~~~~~~--~~~~~~L~I~~v~~  219 (369)
                      ...+.+|++++|.|.++|....  .+.|+++.  +.      +........  ..-+.|+.+..  ..+...|.+.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~   88 (117)
T d1jpth1           9 GGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRA   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCC
Confidence            4567899999999999987644  48898742  21      111111101  11233555543  34456799999999


Q ss_pred             CCCEEEEEEEEe
Q psy12695        220 SDSGIYTCRAKN  231 (369)
Q Consensus       220 ~D~G~Y~C~a~n  231 (369)
                      +|++.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (117)
T d1jpth1          89 EDTAVYYCARDT  100 (117)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CCceEEEEeecC
Confidence            999999997543

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.50  E-value=0.00027  Score=50.68  Aligned_cols=76  Identities=24%  Similarity=0.421  Sum_probs=49.5

Q ss_pred             eeeccCCeEEEEEEeeCCCCC--eEEEEeCC--eE------eeecccccc--cCCcceEEEEee--cceeeEEEcccCCC
Q psy12695        155 VTAEENENVTLSCRATGSPVP--KIKWIFKE--KI------IANISSGLA--NMNKRQYIIKTI--NSLSNLTIVAVTMS  220 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~--~~------~~~~~~~~~--~~~~~~~~~~~~--~~~~~L~I~~v~~~  220 (369)
                      -.+.+|++++|.|.++|....  .+.|+++.  +.      +........  ..-+.|+.+...  .+...|.|.+++.+
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~e   88 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSE   88 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCC
Confidence            457899999999999986654  58899843  11      111111111  111335554433  44567999999999


Q ss_pred             CCEEEEEEEE
Q psy12695        221 DSGIYTCRAK  230 (369)
Q Consensus       221 D~G~Y~C~a~  230 (369)
                      |++.|.|...
T Consensus        89 DtAvYYCAr~   98 (124)
T d1zvya1          89 DTAIYTCGAT   98 (124)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEeec
Confidence            9999999764

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.49  E-value=0.00065  Score=48.05  Aligned_cols=80  Identities=20%  Similarity=0.366  Sum_probs=50.7

Q ss_pred             eeeccCCeEEEEEEeeCCCCC--eEEEEeCC--eEe---e--ecccccc--cCCcceEEEEe--ecceeeEEEcccCCCC
Q psy12695        155 VTAEENENVTLSCRATGSPVP--KIKWIFKE--KII---A--NISSGLA--NMNKRQYIIKT--INSLSNLTIVAVTMSD  221 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~--~~~---~--~~~~~~~--~~~~~~~~~~~--~~~~~~L~I~~v~~~D  221 (369)
                      ..+.+|++++|.|.++|....  .+.|+++.  +.+   .  .......  ..-+.|+.+..  ..+...|.|.+++.+|
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eD   89 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSED   89 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCc
Confidence            457899999999999987654  58898742  211   1  1111100  11123444433  2344579999999999


Q ss_pred             CEEEEEEEEeCCc
Q psy12695        222 SGIYTCRAKNGAG  234 (369)
Q Consensus       222 ~G~Y~C~a~n~~g  234 (369)
                      ++.|.|......+
T Consensus        90 tA~YyCAr~~~~~  102 (118)
T d1lo4h1          90 TAIYYCARGTSFV  102 (118)
T ss_dssp             CEEEEEEEEETTT
T ss_pred             ceEEEecccCCCC
Confidence            9999998655443

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.49  E-value=0.00031  Score=48.96  Aligned_cols=78  Identities=24%  Similarity=0.407  Sum_probs=50.3

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeEe---eecccc----c---ccCCcceEEEEee--cceeeEEEcc
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP--KIKWIFK--EKII---ANISSG----L---ANMNKRQYIIKTI--NSLSNLTIVA  216 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~~---~~~~~~----~---~~~~~~~~~~~~~--~~~~~L~I~~  216 (369)
                      ....+.+|++++|.|.++|....  .+.|+++  ++.+   ......    .   ...-+.++.+...  .+...|.|.+
T Consensus         8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~s   87 (109)
T d2ck0h1           8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNN   87 (109)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccC
Confidence            34567899999999999986654  5889873  2211   111110    0   0111235555432  4456799999


Q ss_pred             cCCCCCEEEEEEEE
Q psy12695        217 VTMSDSGIYTCRAK  230 (369)
Q Consensus       217 v~~~D~G~Y~C~a~  230 (369)
                      ++.+|++.|.|...
T Consensus        88 L~~eDTAvYYCAr~  101 (109)
T d2ck0h1          88 LKTEDTGIYYCVRG  101 (109)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCHhHCEEEEEEEc
Confidence            99999999999753

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.47  E-value=0.00042  Score=49.48  Aligned_cols=77  Identities=19%  Similarity=0.410  Sum_probs=49.2

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeEee-----eccccc-c--cCCcceEEEEe--ecceeeEEEcccCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVP--KIKWIFK--EKIIA-----NISSGL-A--NMNKRQYIIKT--INSLSNLTIVAVTM  219 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~~~-----~~~~~~-~--~~~~~~~~~~~--~~~~~~L~I~~v~~  219 (369)
                      ...+.+|++++|.|.++|....  .+.|+++  ++.+.     ...... .  ..-+.|+.+..  ..+...|.|.+++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~   88 (120)
T d1pg7x1           9 PELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTS   88 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCC
Confidence            4467899999999999886543  5889974  32211     111110 0  01123454433  33455799999999


Q ss_pred             CCCEEEEEEEE
Q psy12695        220 SDSGIYTCRAK  230 (369)
Q Consensus       220 ~D~G~Y~C~a~  230 (369)
                      +|++.|.|...
T Consensus        89 eDtA~YYCAr~   99 (120)
T d1pg7x1          89 NDSAVYYCARE   99 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEeeec
Confidence            99999999864

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.46  E-value=0.00034  Score=49.61  Aligned_cols=81  Identities=21%  Similarity=0.320  Sum_probs=52.3

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeEe------eecccccc--cCCcceEEEEe--ecceeeEEEcccCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVP--KIKWIFK--EKII------ANISSGLA--NMNKRQYIIKT--INSLSNLTIVAVTM  219 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~~------~~~~~~~~--~~~~~~~~~~~--~~~~~~L~I~~v~~  219 (369)
                      ...+.+|++++|.|.++|....  .+.|+++  ++.+      ........  ..-+.|+.+..  ..+...|.|.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence            3567899999999999997655  4889874  2211      11111100  11234555543  23445799999999


Q ss_pred             CCCEEEEEEEEeCCc
Q psy12695        220 SDSGIYTCRAKNGAG  234 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~g  234 (369)
                      +|++.|.|......+
T Consensus        89 eDtAvYYCAr~~~~~  103 (118)
T d2fbjh1          89 EDTALYYCARLHYYG  103 (118)
T ss_dssp             GGCEEEEEEEEETTT
T ss_pred             CcceEEEeeEecCCC
Confidence            999999998766544

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.46  E-value=0.00033  Score=49.31  Aligned_cols=76  Identities=17%  Similarity=0.297  Sum_probs=49.3

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC--eEEEEeCC--eE------eeecccccc--cCCcceEEEEee--cceeeEEEcccCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVP--KIKWIFKE--KI------IANISSGLA--NMNKRQYIIKTI--NSLSNLTIVAVTM  219 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~--~~------~~~~~~~~~--~~~~~~~~~~~~--~~~~~L~I~~v~~  219 (369)
                      ...+.+|++++|.|.++|....  .+.|+++.  +.      +........  ..-+.|+.+...  .+...|.|.+++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~   88 (114)
T d1indh1           9 GDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRS   88 (114)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeecc
Confidence            3467899999999999987654  48898843  21      111111111  112345555433  3445699999999


Q ss_pred             CCCEEEEEEE
Q psy12695        220 SDSGIYTCRA  229 (369)
Q Consensus       220 ~D~G~Y~C~a  229 (369)
                      +|++.|.|..
T Consensus        89 eDtAvYYCA~   98 (114)
T d1indh1          89 EDTALYFCAS   98 (114)
T ss_dssp             GGCEEEEEEC
T ss_pred             CcccEEEECC
Confidence            9999999974

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.45  E-value=0.00033  Score=50.21  Aligned_cols=76  Identities=20%  Similarity=0.330  Sum_probs=47.7

Q ss_pred             eeeccCCeEEEEEEeeCCCCC----eEEEEeC--CeE---ee--ecccccc--cCCcceEEEEee--cceeeEEEcccCC
Q psy12695        155 VTAEENENVTLSCRATGSPVP----KIKWIFK--EKI---IA--NISSGLA--NMNKRQYIIKTI--NSLSNLTIVAVTM  219 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p----~i~W~~~--~~~---~~--~~~~~~~--~~~~~~~~~~~~--~~~~~L~I~~v~~  219 (369)
                      ..+.+|++++|.|.++|....    .+.|+++  ++.   +.  .......  ..-+.|+.+...  .+...|+|.+++.
T Consensus        10 ~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~   89 (123)
T d1r0ah1          10 GIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVET   89 (123)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeeccc
Confidence            457889999999999875432    4679873  221   11  1111110  111345655442  3445799999999


Q ss_pred             CCCEEEEEEEE
Q psy12695        220 SDSGIYTCRAK  230 (369)
Q Consensus       220 ~D~G~Y~C~a~  230 (369)
                      +|++.|.|...
T Consensus        90 eDsAvYyCAr~  100 (123)
T d1r0ah1          90 ADTAIYYCAQS  100 (123)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEeeccc
Confidence            99999999754

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.44  E-value=0.00033  Score=50.97  Aligned_cols=77  Identities=21%  Similarity=0.325  Sum_probs=48.6

Q ss_pred             eeeccCCeEEEEEEeeCCCC----CeEEEEeCC--eE---eeec-ccccc---cCCcceEEEEee--cceeeEEEcccCC
Q psy12695        155 VTAEENENVTLSCRATGSPV----PKIKWIFKE--KI---IANI-SSGLA---NMNKRQYIIKTI--NSLSNLTIVAVTM  219 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~----p~i~W~~~~--~~---~~~~-~~~~~---~~~~~~~~~~~~--~~~~~L~I~~v~~  219 (369)
                      ..+++|++++|.|.++|...    ..+.|+++.  +.   +... .....   ..-+.|+.+...  .+...|.|.+++.
T Consensus        10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~   89 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSP   89 (132)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCc
Confidence            45788999999999987543    258899742  11   1111 11100   111335555432  3345699999999


Q ss_pred             CCCEEEEEEEEe
Q psy12695        220 SDSGIYTCRAKN  231 (369)
Q Consensus       220 ~D~G~Y~C~a~n  231 (369)
                      +|++.|.|....
T Consensus        90 eDtAvYYCAr~~  101 (132)
T d1tjgh1          90 VDTATYFCAHRR  101 (132)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEEEEEec
Confidence            999999998654

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.43  E-value=0.00036  Score=49.58  Aligned_cols=78  Identities=18%  Similarity=0.334  Sum_probs=50.5

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC--eEEEEeCC--eE------eeecccccc--cCCcceEEEEe--ecceeeEEEcccC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP--KIKWIFKE--KI------IANISSGLA--NMNKRQYIIKT--INSLSNLTIVAVT  218 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~--~~------~~~~~~~~~--~~~~~~~~~~~--~~~~~~L~I~~v~  218 (369)
                      ....+.+|++++|.|.++|....  .+.|+++.  +.      +........  ..-+.|+.+..  ..+...|.|.+++
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~   87 (119)
T d1rz7h1           8 GAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLR   87 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccC
Confidence            34567899999999999986654  58998742  21      111111100  11233555543  3445679999999


Q ss_pred             CCCCEEEEEEEE
Q psy12695        219 MSDSGIYTCRAK  230 (369)
Q Consensus       219 ~~D~G~Y~C~a~  230 (369)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (119)
T d1rz7h1          88 SEDTAVYYCAAD   99 (119)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cccceEEEEeec
Confidence            999999999754

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.42  E-value=0.00059  Score=48.22  Aligned_cols=77  Identities=19%  Similarity=0.339  Sum_probs=49.3

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeE------eeecccccc--cCCcceEEEEee--cceeeEEEcccC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP--KIKWIFK--EKI------IANISSGLA--NMNKRQYIIKTI--NSLSNLTIVAVT  218 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~------~~~~~~~~~--~~~~~~~~~~~~--~~~~~L~I~~v~  218 (369)
                      ....+.+|++++|.|.++|....  .+.|+++  ++.      +........  ..-+.|+.+...  .+...|.|.+++
T Consensus         8 g~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~   87 (118)
T d1nlbh1           8 GPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLK   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecc
Confidence            34567999999999999986644  4889874  221      111111110  111335555433  344579999999


Q ss_pred             CCCCEEEEEEE
Q psy12695        219 MSDSGIYTCRA  229 (369)
Q Consensus       219 ~~D~G~Y~C~a  229 (369)
                      .+|++.|.|..
T Consensus        88 ~eDtAvYYCAr   98 (118)
T d1nlbh1          88 NEDTATYFCAR   98 (118)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cCcceEEEEee
Confidence            99999999953

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.42  E-value=0.00052  Score=48.58  Aligned_cols=78  Identities=19%  Similarity=0.376  Sum_probs=49.1

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeEe---eecc--cc-cc--cCCcceEEEEe--ecceeeEEEccc
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVP--KIKWIFK--EKII---ANIS--SG-LA--NMNKRQYIIKT--INSLSNLTIVAV  217 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~~---~~~~--~~-~~--~~~~~~~~~~~--~~~~~~L~I~~v  217 (369)
                      +....+.+|++++|.|.++|....  .+.|+++  ++.+   ....  .. ..  ..-+.++.+..  ..+...|.|.++
T Consensus         7 sg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L   86 (117)
T d1mfah1           7 SGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSL   86 (117)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeeccc
Confidence            345667899999999999986543  4789873  3321   1111  10 00  01122444433  344567999999


Q ss_pred             CCCCCEEEEEEE
Q psy12695        218 TMSDSGIYTCRA  229 (369)
Q Consensus       218 ~~~D~G~Y~C~a  229 (369)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (117)
T d1mfah1          87 TSEDSAVYYCTR   98 (117)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCcceEEEEec
Confidence            999999999975

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.42  E-value=0.00056  Score=48.43  Aligned_cols=78  Identities=24%  Similarity=0.368  Sum_probs=49.5

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeE------eeecccccc--cCCcceEEEE--eecceeeEEEcccC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP--KIKWIFK--EKI------IANISSGLA--NMNKRQYIIK--TINSLSNLTIVAVT  218 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~------~~~~~~~~~--~~~~~~~~~~--~~~~~~~L~I~~v~  218 (369)
                      ....+.+|++++|.|.++|....  .+.|+++  ++.      +........  ..-+.++.+.  ...+...|.|.+++
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~   87 (118)
T d1ct8b1           8 GAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLT   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccC
Confidence            34668899999999999986543  5889873  221      111111111  1112244333  33455679999999


Q ss_pred             CCCCEEEEEEEE
Q psy12695        219 MSDSGIYTCRAK  230 (369)
Q Consensus       219 ~~D~G~Y~C~a~  230 (369)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYYCAr~   99 (118)
T d1ct8b1          88 TEDSAIYYCARY   99 (118)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeee
Confidence            999999999754

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00026  Score=48.59  Aligned_cols=62  Identities=16%  Similarity=0.181  Sum_probs=43.9

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEE
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA  229 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  229 (369)
                      ...|..|++|+|.|+... +...+.|+|++......             .........+.|.+++..|+|.|.|..
T Consensus        12 ~~~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~~-------------~~~~~~~a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2          12 GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQ-------------RGYGKVQAEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEE-------------EEECSSEEEEEEEECCGGGCEEEEEEC
T ss_pred             CCcccCCCcEEEEECCCC-CCCEEEEEECCCcccee-------------ecCCCceeEEEecccChhcCceEEEEe
Confidence            355788999999998743 34578888876432210             011223567999999999999999974

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=0.00038  Score=45.36  Aligned_cols=87  Identities=16%  Similarity=0.316  Sum_probs=53.9

Q ss_pred             CCeeeccCCeEEEEEEee-CCCCCeEEEEeCCeEe-eecccccccCCcceEEEEee---cceeeEEEcccCCCCCEEEEE
Q psy12695        153 PDVTAEENENVTLSCRAT-GSPVPKIKWIFKEKII-ANISSGLANMNKRQYIIKTI---NSLSNLTIVAVTMSDSGIYTC  227 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~-g~p~p~i~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C  227 (369)
                      +..++..|+.+.|.|.+. -.-.|.++|-+-++.. ....     .+..++.....   -....|.+..+..+|.|.|.|
T Consensus        11 S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le-----~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrC   85 (104)
T d1xaua_          11 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLE-----VGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSC   85 (104)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECC-----CBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEE
T ss_pred             ceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEee-----cCCccccchhhcCCeeEEEEEeeeeeecCCCceEE
Confidence            345688999999999984 4567899998744322 1111     01111111111   123468899999999999999


Q ss_pred             EEEeCCceE-EEEEEEEE
Q psy12695        228 RAKNGAGEV-FTNISLNV  244 (369)
Q Consensus       228 ~a~n~~g~~-~~~~~l~v  244 (369)
                      .|.-..|.. +.++++.|
T Consensus        86 Sanf~s~vieSHSvti~V  103 (104)
T d1xaua_          86 STNFNSQVINSHSVTIHV  103 (104)
T ss_dssp             EEEETTEEEECCCEEEEE
T ss_pred             ecCCChhheecceEEEEe
Confidence            987665543 33344433

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.41  E-value=0.00045  Score=47.94  Aligned_cols=76  Identities=21%  Similarity=0.369  Sum_probs=43.5

Q ss_pred             cCCeEEEEEEeeCCCCC--eEEEEeCC--eEe---ee---cccc-c-ccCCcceEEEEe--ecceeeEEEcccCCCCCEE
Q psy12695        159 ENENVTLSCRATGSPVP--KIKWIFKE--KII---AN---ISSG-L-ANMNKRQYIIKT--INSLSNLTIVAVTMSDSGI  224 (369)
Q Consensus       159 ~G~~~~l~C~~~g~p~p--~i~W~~~~--~~~---~~---~~~~-~-~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~  224 (369)
                      +|++++|.|.++|....  .+.|+++.  +.+   ..   .... . ...-+.|+.+..  ..+...|+|.+++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            58999999999986544  58999743  211   11   1100 0 011223454443  2345579999999999999


Q ss_pred             EEEEEEeCCc
Q psy12695        225 YTCRAKNGAG  234 (369)
Q Consensus       225 Y~C~a~n~~g  234 (369)
                      |.|......+
T Consensus        81 YYCAr~~~~~   90 (103)
T d1oari_          81 YYCARMWYYG   90 (103)
T ss_dssp             EEEEEEECSS
T ss_pred             EEeEEECCCC
Confidence            9998655443

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.41  E-value=0.00048  Score=49.24  Aligned_cols=79  Identities=23%  Similarity=0.399  Sum_probs=50.2

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeE---eeec--ccccc---cCCcceEEEEe--ecceeeEEEcccC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP--KIKWIFK--EKI---IANI--SSGLA---NMNKRQYIIKT--INSLSNLTIVAVT  218 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~---~~~~--~~~~~---~~~~~~~~~~~--~~~~~~L~I~~v~  218 (369)
                      ....+.+|++++|.|.++|....  .+.|+++  ++.   +...  .....   ..-+.++.+..  ..+...|.|.+++
T Consensus         8 g~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~   87 (121)
T d1j05b_           8 GAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLT   87 (121)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccC
Confidence            34568899999999999886543  5889874  221   1111  11100   01123555443  2345679999999


Q ss_pred             CCCCEEEEEEEEe
Q psy12695        219 MSDSGIYTCRAKN  231 (369)
Q Consensus       219 ~~D~G~Y~C~a~n  231 (369)
                      .+|++.|.|....
T Consensus        88 ~eDtAvYYCAr~~  100 (121)
T d1j05b_          88 SEDTAVYYCAPFG  100 (121)
T ss_dssp             GGGCEEEEEEEEB
T ss_pred             cCcceEEEeEeec
Confidence            9999999997643

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.41  E-value=0.0011  Score=46.74  Aligned_cols=78  Identities=22%  Similarity=0.344  Sum_probs=49.8

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeE------eeecccccc--cCCcceEEEEee--cceeeEEEcccCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVP--KIKWIFK--EKI------IANISSGLA--NMNKRQYIIKTI--NSLSNLTIVAVTM  219 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~------~~~~~~~~~--~~~~~~~~~~~~--~~~~~L~I~~v~~  219 (369)
                      ...+.+|++++|.|.++|....  .+.|+++  ++.      +........  ..-+.|+.+...  .+...|.|.+++.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~   88 (117)
T d1jnhb1           9 AELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTS   88 (117)
T ss_dssp             CEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCC
Confidence            4567889999999999987655  4889873  221      111111100  111235554432  3445799999999


Q ss_pred             CCCEEEEEEEEe
Q psy12695        220 SDSGIYTCRAKN  231 (369)
Q Consensus       220 ~D~G~Y~C~a~n  231 (369)
                      +|++.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (117)
T d1jnhb1          89 EDSAVYSCSRGR  100 (117)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcceEEEEeecC
Confidence            999999997543

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.41  E-value=0.00036  Score=50.29  Aligned_cols=80  Identities=14%  Similarity=0.291  Sum_probs=50.4

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeEe------eecccccc--cCCcceEEEEee--cceeeEEEccc
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVP--KIKWIFK--EKII------ANISSGLA--NMNKRQYIIKTI--NSLSNLTIVAV  217 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~~------~~~~~~~~--~~~~~~~~~~~~--~~~~~L~I~~v  217 (369)
                      +....+.+|++++|.|.++|....  .+.|+++  ++.+      ........  ..-+.|+.+...  .+...|.|.++
T Consensus         6 sg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L   85 (130)
T d1rhhb1           6 SGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNL   85 (130)
T ss_dssp             CCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeecc
Confidence            344567899999999999986543  4889873  2211      11111100  111234544433  34456999999


Q ss_pred             CCCCCEEEEEEEEe
Q psy12695        218 TMSDSGIYTCRAKN  231 (369)
Q Consensus       218 ~~~D~G~Y~C~a~n  231 (369)
                      +.+|++.|.|....
T Consensus        86 ~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          86 RSDDTAVYYCARDF   99 (130)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCCCcEEEEEEeec
Confidence            99999999997643

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.40  E-value=0.00042  Score=49.42  Aligned_cols=77  Identities=19%  Similarity=0.348  Sum_probs=49.1

Q ss_pred             eeeccCCeEEEEEEeeCCCCC--eEEEEeCC--eEe-----eeccccc---ccCCcceEEEEee--cceeeEEEcccCCC
Q psy12695        155 VTAEENENVTLSCRATGSPVP--KIKWIFKE--KII-----ANISSGL---ANMNKRQYIIKTI--NSLSNLTIVAVTMS  220 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~--~~~-----~~~~~~~---~~~~~~~~~~~~~--~~~~~L~I~~v~~~  220 (369)
                      ..+.+|++++|.|.++|....  .+.|+++.  +.+     .......   ...-+.|+.+...  .+...|.|.+++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~e   89 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAE   89 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccc
Confidence            456889999999999986543  48898742  211     1111110   0111235555433  34567999999999


Q ss_pred             CCEEEEEEEEe
Q psy12695        221 DSGIYTCRAKN  231 (369)
Q Consensus       221 D~G~Y~C~a~n  231 (369)
                      |++.|.|....
T Consensus        90 DtAvYYCAr~~  100 (121)
T d1ol0a_          90 DTAVYYCAREP  100 (121)
T ss_dssp             GCEEEEEEECC
T ss_pred             cceEEEEEEec
Confidence            99999997543

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.39  E-value=0.00021  Score=49.75  Aligned_cols=74  Identities=24%  Similarity=0.513  Sum_probs=45.7

Q ss_pred             eeccCCeEEEEEEeeCCCC--CeEEEEeCC--e---Eeeecc-ccc---ccCCcceEEEEe--ecceeeEEEcccCCCCC
Q psy12695        156 TAEENENVTLSCRATGSPV--PKIKWIFKE--K---IIANIS-SGL---ANMNKRQYIIKT--INSLSNLTIVAVTMSDS  222 (369)
Q Consensus       156 ~~~~G~~~~l~C~~~g~p~--p~i~W~~~~--~---~~~~~~-~~~---~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~  222 (369)
                      .+++|++++|.|.++|...  -.+.|+++.  +   .+.... ...   ...-+.|+.+..  ..+...|.|.+++.+|+
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            4678999999999988543  358899843  1   111111 110   011233555543  23445799999999999


Q ss_pred             EEEEEEE
Q psy12695        223 GIYTCRA  229 (369)
Q Consensus       223 G~Y~C~a  229 (369)
                      +.|.|..
T Consensus        84 AvYyCA~   90 (107)
T d1sjva_          84 AVYYCYT   90 (107)
T ss_dssp             SEEEEEE
T ss_pred             eeeeEec
Confidence            9999964

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.39  E-value=0.00034  Score=49.25  Aligned_cols=78  Identities=23%  Similarity=0.330  Sum_probs=49.8

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeEe------eecccccc--cCCcceEEEEe--ecceeeEEEcccC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP--KIKWIFK--EKII------ANISSGLA--NMNKRQYIIKT--INSLSNLTIVAVT  218 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~~------~~~~~~~~--~~~~~~~~~~~--~~~~~~L~I~~v~  218 (369)
                      ....+.+|++++|.|.++|....  .+.|+++  ++.+      ........  ..-+.++.+..  ..+...|.+.+++
T Consensus         8 g~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~   87 (116)
T d1mjuh1           8 GAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLT   87 (116)
T ss_dssp             SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccC
Confidence            44678899999999999986654  4789873  2211      11111000  11123444433  3445679999999


Q ss_pred             CCCCEEEEEEEE
Q psy12695        219 MSDSGIYTCRAK  230 (369)
Q Consensus       219 ~~D~G~Y~C~a~  230 (369)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYYCAr~   99 (116)
T d1mjuh1          88 SDDSAVYYCANK   99 (116)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCCceEEEEccc
Confidence            999999999753

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.39  E-value=0.00028  Score=51.00  Aligned_cols=77  Identities=26%  Similarity=0.503  Sum_probs=48.9

Q ss_pred             eeeccCCeEEEEEEeeCCCCC--eEEEEeCC--eE---eeecc------ccc----ccCCcceEEEEe--ecceeeEEEc
Q psy12695        155 VTAEENENVTLSCRATGSPVP--KIKWIFKE--KI---IANIS------SGL----ANMNKRQYIIKT--INSLSNLTIV  215 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~--~~---~~~~~------~~~----~~~~~~~~~~~~--~~~~~~L~I~  215 (369)
                      -.+.+|++++|.|.++|....  .+.|+++.  +.   +....      ...    ...-+.|+.+..  ..+...|+|.
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~   89 (127)
T d1i3ua_          10 GLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMN   89 (127)
T ss_dssp             EECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEEC
T ss_pred             ceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeee
Confidence            456889999999999986543  48899742  11   11000      000    011123554443  3445679999


Q ss_pred             ccCCCCCEEEEEEEEe
Q psy12695        216 AVTMSDSGIYTCRAKN  231 (369)
Q Consensus       216 ~v~~~D~G~Y~C~a~n  231 (369)
                      +++.+|++.|.|....
T Consensus        90 ~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          90 SLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             SCCGGGCEEEEEEEES
T ss_pred             cccccceeEEEEEEEe
Confidence            9999999999998643

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.38  E-value=0.00041  Score=50.12  Aligned_cols=76  Identities=20%  Similarity=0.321  Sum_probs=47.7

Q ss_pred             eeeccCCeEEEEEEeeCCCC----CeEEEEeC--CeE---eeeccc-ccc---cCCcceEEEEee--cceeeEEEcccCC
Q psy12695        155 VTAEENENVTLSCRATGSPV----PKIKWIFK--EKI---IANISS-GLA---NMNKRQYIIKTI--NSLSNLTIVAVTM  219 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~----p~i~W~~~--~~~---~~~~~~-~~~---~~~~~~~~~~~~--~~~~~L~I~~v~~  219 (369)
                      ..+.+|++++|.|.++|...    ..+.|+++  ++.   +..... ...   ..-+.+|.+...  .+...|.|.+++.
T Consensus        10 ~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~   89 (126)
T d1etzb1          10 GILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDT   89 (126)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccc
Confidence            45788999999999987533    24679863  221   111111 110   111335655443  3456799999999


Q ss_pred             CCCEEEEEEEE
Q psy12695        220 SDSGIYTCRAK  230 (369)
Q Consensus       220 ~D~G~Y~C~a~  230 (369)
                      +|++.|.|...
T Consensus        90 eDtAvYyCAr~  100 (126)
T d1etzb1          90 SDTATYHCARR  100 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cccceEEEEEe
Confidence            99999999853

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.38  E-value=0.00048  Score=49.19  Aligned_cols=77  Identities=22%  Similarity=0.358  Sum_probs=49.6

Q ss_pred             eeeccCCeEEEEEEeeCCCCC--eEEEEeCC--eE---eee---ccccc--ccCCcceEEEEee--cceeeEEEcccCCC
Q psy12695        155 VTAEENENVTLSCRATGSPVP--KIKWIFKE--KI---IAN---ISSGL--ANMNKRQYIIKTI--NSLSNLTIVAVTMS  220 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~--~~---~~~---~~~~~--~~~~~~~~~~~~~--~~~~~L~I~~v~~~  220 (369)
                      ..+.+|++++|.|.++|....  .+.|+++.  +.   +..   .....  ...-+.||.+...  .+...|.|.+++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~e   89 (122)
T d1bz7b1          10 GLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSE   89 (122)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeeccc
Confidence            457899999999999987654  48999842  21   111   11110  0111345555433  34567999999999


Q ss_pred             CCEEEEEEEEe
Q psy12695        221 DSGIYTCRAKN  231 (369)
Q Consensus       221 D~G~Y~C~a~n  231 (369)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (122)
T d1bz7b1          90 DTAIYYCTRGG  100 (122)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CceEEEeecCC
Confidence            99999997643

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.37  E-value=0.00053  Score=48.63  Aligned_cols=77  Identities=19%  Similarity=0.367  Sum_probs=49.3

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeEe-----ee-cccccc--cCCcceEEEEe--ecceeeEEEcccC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP--KIKWIFK--EKII-----AN-ISSGLA--NMNKRQYIIKT--INSLSNLTIVAVT  218 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~~-----~~-~~~~~~--~~~~~~~~~~~--~~~~~~L~I~~v~  218 (369)
                      ....+.+|++++|.|.++|....  .+.|+++  ++.+     .. ......  ..-+.|+.+..  ..+...|.|.+++
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~   87 (119)
T d1eapb1           8 GTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLT   87 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeeccc
Confidence            34567899999999999987644  4889974  2211     11 111111  11123554443  3345679999999


Q ss_pred             CCCCEEEEEEE
Q psy12695        219 MSDSGIYTCRA  229 (369)
Q Consensus       219 ~~D~G~Y~C~a  229 (369)
                      .+|++.|.|..
T Consensus        88 ~eDTAvYYCAr   98 (119)
T d1eapb1          88 SEDSAVYFCKR   98 (119)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEEE
Confidence            99999999964

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.37  E-value=0.00028  Score=50.43  Aligned_cols=76  Identities=25%  Similarity=0.361  Sum_probs=48.2

Q ss_pred             eeeccCCeEEEEEEeeCCCC--CeEEEEeC--CeE---eee--cccc-cc--cCCcceEEEEe--ecceeeEEEcccCCC
Q psy12695        155 VTAEENENVTLSCRATGSPV--PKIKWIFK--EKI---IAN--ISSG-LA--NMNKRQYIIKT--INSLSNLTIVAVTMS  220 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~--p~i~W~~~--~~~---~~~--~~~~-~~--~~~~~~~~~~~--~~~~~~L~I~~v~~~  220 (369)
                      ..+.+|++++|.|.++|...  -.+.|+++  ++.   +..  .... ..  ..-+.|+.+..  ..+...|.|.+++.+
T Consensus        10 ~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~e   89 (119)
T d1qnzh_          10 ELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSD   89 (119)
T ss_dssp             CEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGG
T ss_pred             ceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCcc
Confidence            46789999999999988543  35899974  321   111  1111 11  11123555443  234457999999999


Q ss_pred             CCEEEEEEEE
Q psy12695        221 DSGIYTCRAK  230 (369)
Q Consensus       221 D~G~Y~C~a~  230 (369)
                      |++.|.|...
T Consensus        90 DsAvYYCA~~   99 (119)
T d1qnzh_          90 DSAVYYCAIH   99 (119)
T ss_dssp             GCEEEEEEEC
T ss_pred             ceeEEEEEEe
Confidence            9999999653

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.37  E-value=0.00053  Score=48.69  Aligned_cols=77  Identities=22%  Similarity=0.385  Sum_probs=49.4

Q ss_pred             eeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeEee------ecccc-c---ccCCcceEEEEe--ecceeeEEEcccC
Q psy12695        155 VTAEENENVTLSCRATGSPVP--KIKWIFK--EKIIA------NISSG-L---ANMNKRQYIIKT--INSLSNLTIVAVT  218 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~~~------~~~~~-~---~~~~~~~~~~~~--~~~~~~L~I~~v~  218 (369)
                      ..+.+|++++|.|.++|....  .+.|+++  ++.+.      ..... .   ...-+.||.+..  ..+...|.|.+++
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~   89 (120)
T d1dlfh_          10 GLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLR   89 (120)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeecc
Confidence            457889999999999986543  5889873  32211      11110 0   011123555543  2345679999999


Q ss_pred             CCCCEEEEEEEEe
Q psy12695        219 MSDSGIYTCRAKN  231 (369)
Q Consensus       219 ~~D~G~Y~C~a~n  231 (369)
                      .+|++.|.|....
T Consensus        90 ~eDtAvYYCA~~~  102 (120)
T d1dlfh_          90 AEDTGIYYCTGIY  102 (120)
T ss_dssp             GGGCEEEEEEEEB
T ss_pred             CCCceEEEeeEec
Confidence            9999999997543

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.37  E-value=0.00055  Score=48.57  Aligned_cols=78  Identities=22%  Similarity=0.347  Sum_probs=49.3

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC---eEEEEeC--CeEe---eec-ccccc---cCCcceEEEEe--ecceeeEEEcccCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVP---KIKWIFK--EKII---ANI-SSGLA---NMNKRQYIIKT--INSLSNLTIVAVTM  219 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p---~i~W~~~--~~~~---~~~-~~~~~---~~~~~~~~~~~--~~~~~~L~I~~v~~  219 (369)
                      ...+.+|++++|.|.++|....   .+.|+++  ++.+   ... +....   ..-+.|+.+..  ..+...|.|.+++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~   88 (119)
T d1ncwh1           9 PGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTT   88 (119)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccccccc
Confidence            3457899999999999997653   3789873  3221   110 11110   11123444433  34456799999999


Q ss_pred             CCCEEEEEEEEe
Q psy12695        220 SDSGIYTCRAKN  231 (369)
Q Consensus       220 ~D~G~Y~C~a~n  231 (369)
                      +|++.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (119)
T d1ncwh1          89 EDTATYYCAGLL  100 (119)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCceEEEEeEec
Confidence            999999997543

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.0011  Score=42.65  Aligned_cols=58  Identities=12%  Similarity=0.248  Sum_probs=40.7

Q ss_pred             ccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        158 EENENVTLSCRATGSPVP--KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ..|..+.|+|.....+.+  .-.|.|++..+.......              ..-.+.|..  .+++|.|.|+..+
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~--------------~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG--------------QKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC--------------SEEEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCC--------------CceEEEEec--CCCCceEEEEEcC
Confidence            568899999999765543  368999999887533221              122455543  6789999999753

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.35  E-value=0.00018  Score=50.93  Aligned_cols=76  Identities=18%  Similarity=0.353  Sum_probs=46.7

Q ss_pred             eeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeEe---eeccc-cccc---CCcceEEEEe--ecceeeEEEcccCCCC
Q psy12695        155 VTAEENENVTLSCRATGSPVP--KIKWIFK--EKII---ANISS-GLAN---MNKRQYIIKT--INSLSNLTIVAVTMSD  221 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~~---~~~~~-~~~~---~~~~~~~~~~--~~~~~~L~I~~v~~~D  221 (369)
                      ..+.+|++++|.|.++|....  .+.|+++  ++.+   ..... ....   .-+.|+.+..  ..+...|.+.+++.+|
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eD   89 (116)
T d1fn4b1          10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD   89 (116)
T ss_dssp             SBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCC
T ss_pred             ceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCC
Confidence            356789999999999986544  4889873  2211   11111 1100   0012333322  3344579999999999


Q ss_pred             CEEEEEEEE
Q psy12695        222 SGIYTCRAK  230 (369)
Q Consensus       222 ~G~Y~C~a~  230 (369)
                      ++.|.|...
T Consensus        90 TAvYyCAr~   98 (116)
T d1fn4b1          90 TGTYYCTRD   98 (116)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEEee
Confidence            999999754

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.32  E-value=0.00027  Score=50.39  Aligned_cols=78  Identities=18%  Similarity=0.327  Sum_probs=48.7

Q ss_pred             CeeeccCCeEEEEEEeeCCCC--C--eEEEEeCC--eEee-----ecccccc--cCCcceEEEEe--ecceeeEEEcccC
Q psy12695        154 DVTAEENENVTLSCRATGSPV--P--KIKWIFKE--KIIA-----NISSGLA--NMNKRQYIIKT--INSLSNLTIVAVT  218 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~--p--~i~W~~~~--~~~~-----~~~~~~~--~~~~~~~~~~~--~~~~~~L~I~~v~  218 (369)
                      ...+.+|++++|.|.++|...  .  .+.|+++.  +.+.     .......  ..-+.|+.+..  ..+...|.|.+++
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~   88 (120)
T d1ai1h1           9 PAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVT   88 (120)
T ss_dssp             CSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCC
T ss_pred             CceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeee
Confidence            345789999999999998643  2  47898742  2211     1111100  01123555543  2344579999999


Q ss_pred             CCCCEEEEEEEEe
Q psy12695        219 MSDSGIYTCRAKN  231 (369)
Q Consensus       219 ~~D~G~Y~C~a~n  231 (369)
                      .+|++.|.|....
T Consensus        89 ~eDtAvYYCAr~~  101 (120)
T d1ai1h1          89 NEDTAMYYCSREN  101 (120)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             ccceeEEEEEecC
Confidence            9999999997543

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.31  E-value=0.00051  Score=48.99  Aligned_cols=78  Identities=22%  Similarity=0.389  Sum_probs=50.0

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeE------eeecccc-c---ccCCcceEEEEee--cceeeEEEccc
Q psy12695        154 DVTAEENENVTLSCRATGSPVP--KIKWIFK--EKI------IANISSG-L---ANMNKRQYIIKTI--NSLSNLTIVAV  217 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~------~~~~~~~-~---~~~~~~~~~~~~~--~~~~~L~I~~v  217 (369)
                      ...+.+|++++|.|.++|....  .+.|+++  ++.      +...... .   ...-+.|+.+...  .+...|.|.++
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL   88 (122)
T d1q9rb1           9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL   88 (122)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeee
Confidence            3467889999999999986654  4889974  221      1111111 0   0112335555432  34457999999


Q ss_pred             CCCCCEEEEEEEEe
Q psy12695        218 TMSDSGIYTCRAKN  231 (369)
Q Consensus       218 ~~~D~G~Y~C~a~n  231 (369)
                      +.+|++.|.|....
T Consensus        89 ~~eDTAvYYCar~~  102 (122)
T d1q9rb1          89 RAEDSATYYCARDH  102 (122)
T ss_dssp             CGGGCEEEEEEECC
T ss_pred             ccCcceEEEEEecC
Confidence            99999999998643

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.31  E-value=0.00089  Score=47.92  Aligned_cols=78  Identities=18%  Similarity=0.324  Sum_probs=50.0

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC--eEEEEeCC--eEe---ee--ccccc-c--cCCcceEEEEee--cceeeEEEcccCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVP--KIKWIFKE--KII---AN--ISSGL-A--NMNKRQYIIKTI--NSLSNLTIVAVTM  219 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~--~~~---~~--~~~~~-~--~~~~~~~~~~~~--~~~~~L~I~~v~~  219 (369)
                      ...+.+|++++|.|.++|....  .+.|+++.  +.+   ..  ..... .  ..-+.|+.+...  .+...|.|.+++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~   88 (126)
T d1dfbh1           9 GGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRA   88 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeecc
Confidence            3457899999999999986654  48898742  211   11  11111 0  111335555433  3446799999999


Q ss_pred             CCCEEEEEEEEe
Q psy12695        220 SDSGIYTCRAKN  231 (369)
Q Consensus       220 ~D~G~Y~C~a~n  231 (369)
                      +|++.|.|....
T Consensus        89 eDtavYYCAr~~  100 (126)
T d1dfbh1          89 EDMALYYCVKGR  100 (126)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcceEEEEEecc
Confidence            999999997643

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.30  E-value=0.00073  Score=48.39  Aligned_cols=77  Identities=13%  Similarity=0.300  Sum_probs=49.8

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeEe------eecccccc--cCCcceEEEEe--ecceeeEEEcccC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP--KIKWIFK--EKII------ANISSGLA--NMNKRQYIIKT--INSLSNLTIVAVT  218 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~~------~~~~~~~~--~~~~~~~~~~~--~~~~~~L~I~~v~  218 (369)
                      ....+.+|++++|.|.++|....  .+.|+++  ++.+      ........  ..-+.++.+..  ..+...|.|.+++
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~   87 (127)
T d1n0xh1           8 GAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLR   87 (127)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccC
Confidence            45678899999999999986654  4889873  2211      11111111  11133555443  3345679999999


Q ss_pred             CCCCEEEEEEE
Q psy12695        219 MSDSGIYTCRA  229 (369)
Q Consensus       219 ~~D~G~Y~C~a  229 (369)
                      .+|++.|.|..
T Consensus        88 ~eDtAvYYCAR   98 (127)
T d1n0xh1          88 SADTAVYYCAR   98 (127)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCCceEEEEEe
Confidence            99999999974

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.29  E-value=0.00069  Score=48.68  Aligned_cols=77  Identities=18%  Similarity=0.327  Sum_probs=49.3

Q ss_pred             eeeccCCeEEEEEEeeCCCCC--eEEEEeCC--eEe------eecccccc--cCCcceEEEEee--cceeeEEEcccCCC
Q psy12695        155 VTAEENENVTLSCRATGSPVP--KIKWIFKE--KII------ANISSGLA--NMNKRQYIIKTI--NSLSNLTIVAVTMS  220 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~--~~~------~~~~~~~~--~~~~~~~~~~~~--~~~~~L~I~~v~~~  220 (369)
                      ..+.+|++++|.|.++|....  .+.|+++.  +.+      ........  ..-+.|+.+...  .+...|.|.+++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~e   89 (127)
T d2fb4h1          10 GVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPE   89 (127)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeec
Confidence            456889999999999986543  48898742  211      11111110  111235554433  34567999999999


Q ss_pred             CCEEEEEEEEe
Q psy12695        221 DSGIYTCRAKN  231 (369)
Q Consensus       221 D~G~Y~C~a~n  231 (369)
                      |++.|.|....
T Consensus        90 DTA~YYCAr~~  100 (127)
T d2fb4h1          90 DTGVYFCARDG  100 (127)
T ss_dssp             GCEEEEEEEEC
T ss_pred             ceeEEEEEEec
Confidence            99999997643

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.29  E-value=0.00049  Score=48.93  Aligned_cols=76  Identities=21%  Similarity=0.346  Sum_probs=48.6

Q ss_pred             eeeccCCeEEEEEEeeCCCCC--eEEEEeCC--eE---ee--e-cccccc--cCCcceEEEEe--ecceeeEEEcccCCC
Q psy12695        155 VTAEENENVTLSCRATGSPVP--KIKWIFKE--KI---IA--N-ISSGLA--NMNKRQYIIKT--INSLSNLTIVAVTMS  220 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~--~~---~~--~-~~~~~~--~~~~~~~~~~~--~~~~~~L~I~~v~~~  220 (369)
                      ..+.+|++++|.|.++|....  .+.|+++.  +.   +.  . ......  ..-+.|+.+..  ..+...|.|.+++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~e   89 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPE   89 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecccc
Confidence            457899999999999986544  48898743  21   11  1 111110  11133555543  234457999999999


Q ss_pred             CCEEEEEEEE
Q psy12695        221 DSGIYTCRAK  230 (369)
Q Consensus       221 D~G~Y~C~a~  230 (369)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d2p49b1          90 DTATYYCAAG   99 (121)
T ss_dssp             GCEEEEEEES
T ss_pred             ceeEEeeecc
Confidence            9999999753

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.29  E-value=0.00074  Score=48.42  Aligned_cols=78  Identities=17%  Similarity=0.330  Sum_probs=49.5

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeEe------eecccccc--cCCcceEEEEee--cceeeEEEcccCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVP--KIKWIFK--EKII------ANISSGLA--NMNKRQYIIKTI--NSLSNLTIVAVTM  219 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~~------~~~~~~~~--~~~~~~~~~~~~--~~~~~L~I~~v~~  219 (369)
                      ...+.+|++++|.|.++|....  .+.|+++  ++.+      ........  ..-+.|+.+...  .+...|.|.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~   88 (127)
T d2fx7h1           9 AEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRP   88 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCc
Confidence            3457899999999999986544  4899873  2211      11111100  111234444432  3456799999999


Q ss_pred             CCCEEEEEEEEe
Q psy12695        220 SDSGIYTCRAKN  231 (369)
Q Consensus       220 ~D~G~Y~C~a~n  231 (369)
                      +|++.|.|....
T Consensus        89 eDTavYYCAR~~  100 (127)
T d2fx7h1          89 EDTAVYYCAREG  100 (127)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccceEEEEeecc
Confidence            999999998643

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.28  E-value=0.00079  Score=48.34  Aligned_cols=78  Identities=18%  Similarity=0.337  Sum_probs=48.4

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC--eEEEEeCC--eE------eeecccccc--cCCcceEEEEe--ecceeeEEEcccCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVP--KIKWIFKE--KI------IANISSGLA--NMNKRQYIIKT--INSLSNLTIVAVTM  219 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~--~~------~~~~~~~~~--~~~~~~~~~~~--~~~~~~L~I~~v~~  219 (369)
                      ...+.+|++++|.|.++|....  .+.|+++.  +.      +........  ..-+.++.+..  ..+...|.|.+++.
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~   87 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP   87 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence            3567899999999999986554  47898742  21      111111111  11123555543  33445699999999


Q ss_pred             CCCEEEEEEEEe
Q psy12695        220 SDSGIYTCRAKN  231 (369)
Q Consensus       220 ~D~G~Y~C~a~n  231 (369)
                      +|++.|.|....
T Consensus        88 eDTAvYYCAr~~   99 (126)
T d1rjca1          88 EDTAMYYCAADT   99 (126)
T ss_dssp             GGCEEEEEEECC
T ss_pred             ccCceeEEEeec
Confidence            999999997543

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.28  E-value=0.00093  Score=47.96  Aligned_cols=78  Identities=21%  Similarity=0.366  Sum_probs=49.6

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeE------eeecccccc--cCCcceEEEEe--ecceeeEEEcccC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP--KIKWIFK--EKI------IANISSGLA--NMNKRQYIIKT--INSLSNLTIVAVT  218 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~------~~~~~~~~~--~~~~~~~~~~~--~~~~~~L~I~~v~  218 (369)
                      ....+.+|++++|.|.++|....  .+.|+++  ++.      +........  ..-+.|+.+..  ..+...|.|.+++
T Consensus         8 g~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~   87 (125)
T d1rihh1           8 GNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLT   87 (125)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccC
Confidence            44567899999999999986644  4889873  221      111111110  11123444433  3345679999999


Q ss_pred             CCCCEEEEEEEE
Q psy12695        219 MSDSGIYTCRAK  230 (369)
Q Consensus       219 ~~D~G~Y~C~a~  230 (369)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYYCAR~   99 (125)
T d1rihh1          88 SEDSAVYYCARE   99 (125)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEEEeee
Confidence            999999999854

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.28  E-value=0.00083  Score=48.43  Aligned_cols=78  Identities=15%  Similarity=0.297  Sum_probs=49.6

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC--eEEEEeCC--eE---e---eecccccc--cCCcceEEEEee--cceeeEEEcccCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVP--KIKWIFKE--KI---I---ANISSGLA--NMNKRQYIIKTI--NSLSNLTIVAVTM  219 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~--~~---~---~~~~~~~~--~~~~~~~~~~~~--~~~~~L~I~~v~~  219 (369)
                      ...+.+|++++|.|.++|....  .+.|+++.  +.   +   ........  ..-+.|+.+...  .+...|.|.+++.
T Consensus         9 ~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~   88 (135)
T d1ieha_           9 GGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKS   88 (135)
T ss_dssp             CCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCS
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCc
Confidence            3457899999999999986543  48899742  21   1   11111100  112335555432  3345799999999


Q ss_pred             CCCEEEEEEEEe
Q psy12695        220 SDSGIYTCRAKN  231 (369)
Q Consensus       220 ~D~G~Y~C~a~n  231 (369)
                      +|++.|+|....
T Consensus        89 eDTAvYYCAr~~  100 (135)
T d1ieha_          89 EDTAVYYCAKYS  100 (135)
T ss_dssp             SSCEEEEEEEBS
T ss_pred             ccceeeEEEEec
Confidence            999999997653

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.27  E-value=0.00068  Score=48.56  Aligned_cols=77  Identities=16%  Similarity=0.299  Sum_probs=50.1

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeEe------eeccccc--ccCCcceEEEEe--ecceeeEEEcccC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP--KIKWIFK--EKII------ANISSGL--ANMNKRQYIIKT--INSLSNLTIVAVT  218 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~~------~~~~~~~--~~~~~~~~~~~~--~~~~~~L~I~~v~  218 (369)
                      ....+.+|++++|.|.++|....  .+.|+++  ++.+      .......  ...-+.|+.+..  ..+...|.|.+++
T Consensus         7 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~   86 (126)
T d1lmka1           7 GTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLT   86 (126)
T ss_dssp             CCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccC
Confidence            44567899999999999987654  4789873  2211      1111110  011134555543  3455689999999


Q ss_pred             CCCCEEEEEEE
Q psy12695        219 MSDSGIYTCRA  229 (369)
Q Consensus       219 ~~D~G~Y~C~a  229 (369)
                      .+|++.|.|..
T Consensus        87 ~eDTAvYYCAr   97 (126)
T d1lmka1          87 SEDSAVYYCAR   97 (126)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEee
Confidence            99999999974

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.23  E-value=0.0012  Score=47.35  Aligned_cols=79  Identities=19%  Similarity=0.307  Sum_probs=51.2

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCCe--EEEEeCC--eE------eeeccccc--ccCCcceEEEEee--cceeeEEEcccC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVPK--IKWIFKE--KI------IANISSGL--ANMNKRQYIIKTI--NSLSNLTIVAVT  218 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p~--i~W~~~~--~~------~~~~~~~~--~~~~~~~~~~~~~--~~~~~L~I~~v~  218 (369)
                      ....+.+|++++|.|.++|.....  +.|+++.  +.      +.......  ...-+.|+.+...  .+...|.|.+++
T Consensus         8 G~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~   87 (128)
T d2nxyd1           8 GAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLR   87 (128)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecc
Confidence            345678999999999999976553  7888732  11      11111111  1112345555443  345679999999


Q ss_pred             CCCCEEEEEEEEe
Q psy12695        219 MSDSGIYTCRAKN  231 (369)
Q Consensus       219 ~~D~G~Y~C~a~n  231 (369)
                      .+|++.|.|....
T Consensus        88 ~eDTA~YYCAr~~  100 (128)
T d2nxyd1          88 SDDTAVYFCAGVY  100 (128)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             ccCceEEEEeEEe
Confidence            9999999998654

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.22  E-value=0.001  Score=47.17  Aligned_cols=78  Identities=15%  Similarity=0.293  Sum_probs=50.0

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC--eEEEEeCC--eEe------eecccc-cc-cCCcceEEEEe--ecceeeEEEcccC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP--KIKWIFKE--KII------ANISSG-LA-NMNKRQYIIKT--INSLSNLTIVAVT  218 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~--~~~------~~~~~~-~~-~~~~~~~~~~~--~~~~~~L~I~~v~  218 (369)
                      ....+.+|++++|.|.++|....  .+.|+++.  +.+      ...... .+ ..-+.|+.+..  ..+...|.+.+++
T Consensus         8 g~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~   87 (120)
T d1ad9b1           8 GAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLR   87 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccC
Confidence            34568899999999999986654  48898742  211      111111 00 11133454433  3455679999999


Q ss_pred             CCCCEEEEEEEE
Q psy12695        219 MSDSGIYTCRAK  230 (369)
Q Consensus       219 ~~D~G~Y~C~a~  230 (369)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (120)
T d1ad9b1          88 SEDTAFYFCARE   99 (120)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEEEc
Confidence            999999999754

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.21  E-value=0.0008  Score=46.65  Aligned_cols=68  Identities=18%  Similarity=0.123  Sum_probs=44.3

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ...+..|++|+|.|+... +...+.|+|++.......          .............|..+...|+|.|.|.....
T Consensus        14 ~~~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~----------~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2          14 GPTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRL----------PAGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             CSEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEE----------ECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CCcccCCCeEEEEECCCC-CccEEEEEECCCccccEE----------EccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            456789999999998743 455788888874322100          00011223445677888889999999976543

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.20  E-value=0.001  Score=47.47  Aligned_cols=77  Identities=17%  Similarity=0.337  Sum_probs=49.8

Q ss_pred             eeeccCCeEEEEEEeeCCCCC--eEEEEeCC--eEe------eeccccc--ccCCcceEEEEee--cceeeEEEcccCCC
Q psy12695        155 VTAEENENVTLSCRATGSPVP--KIKWIFKE--KII------ANISSGL--ANMNKRQYIIKTI--NSLSNLTIVAVTMS  220 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~--~~~------~~~~~~~--~~~~~~~~~~~~~--~~~~~L~I~~v~~~  220 (369)
                      -.+.+|++++|.|.++|....  .+.|+++.  +.+      .......  ...-+.||.+...  .+...|.|.+++.+
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~e   89 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVE   89 (125)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCc
Confidence            457899999999999986543  48998742  211      1111111  1112345555432  34567999999999


Q ss_pred             CCEEEEEEEEe
Q psy12695        221 DSGIYTCRAKN  231 (369)
Q Consensus       221 D~G~Y~C~a~n  231 (369)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (125)
T d1op3h1          90 DTAIYYCARKG  100 (125)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceeEeEeecc
Confidence            99999998643

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.19  E-value=0.00062  Score=49.06  Aligned_cols=78  Identities=15%  Similarity=0.307  Sum_probs=49.6

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeEe------eecccccc--cCCcceEEEEee--cceeeEEEcccC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP--KIKWIFK--EKII------ANISSGLA--NMNKRQYIIKTI--NSLSNLTIVAVT  218 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~~------~~~~~~~~--~~~~~~~~~~~~--~~~~~L~I~~v~  218 (369)
                      ....+.+|++++|.|.++|....  .+.|+++  ++.+      ........  ..-+.|+.+...  .+...|.+.+++
T Consensus         8 g~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~   87 (130)
T d1rzga1           8 GAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLR   87 (130)
T ss_dssp             CCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecC
Confidence            34567899999999999986544  5899873  2211      11111100  111234554433  344569999999


Q ss_pred             CCCCEEEEEEEE
Q psy12695        219 MSDSGIYTCRAK  230 (369)
Q Consensus       219 ~~D~G~Y~C~a~  230 (369)
                      .+|++.|.|...
T Consensus        88 ~eDtA~YYCAr~   99 (130)
T d1rzga1          88 SEDTAVFYCASP   99 (130)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCccEEEEEEEe
Confidence            999999999854

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.19  E-value=0.0019  Score=46.00  Aligned_cols=78  Identities=18%  Similarity=0.289  Sum_probs=49.5

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeEe---e--e-cccccc--cCCcceEEEEe--ecceeeEEEcccC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP--KIKWIFK--EKII---A--N-ISSGLA--NMNKRQYIIKT--INSLSNLTIVAVT  218 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~~---~--~-~~~~~~--~~~~~~~~~~~--~~~~~~L~I~~v~  218 (369)
                      ....+.+|++++|.|.++|....  .+.|+++  ++.+   .  . ......  ..-+.|+.+..  ..+...|.|.+++
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~   87 (124)
T d2b1hh1           8 GAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLK   87 (124)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeeccc
Confidence            34567899999999999987654  4889873  2211   1  1 111000  11123444433  3345679999999


Q ss_pred             CCCCEEEEEEEE
Q psy12695        219 MSDSGIYTCRAK  230 (369)
Q Consensus       219 ~~D~G~Y~C~a~  230 (369)
                      .+|++.|.|...
T Consensus        88 ~eDTA~YYCAR~   99 (124)
T d2b1hh1          88 PSDTALYYCARL   99 (124)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cccceEEEEeec
Confidence            999999999643

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.15  E-value=0.0012  Score=47.01  Aligned_cols=78  Identities=19%  Similarity=0.288  Sum_probs=50.2

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC--eEEEEeCC--eE------eeecccccc--cCCcceEEEEee--cceeeEEEcccC
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP--KIKWIFKE--KI------IANISSGLA--NMNKRQYIIKTI--NSLSNLTIVAVT  218 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~--~~------~~~~~~~~~--~~~~~~~~~~~~--~~~~~L~I~~v~  218 (369)
                      ....+.+|++++|.|.++|....  .+.|+++.  +-      +........  ..-+.|+.+...  .+...|.+.+++
T Consensus         8 G~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~   87 (124)
T d1yedb1           8 GPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLK   87 (124)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccC
Confidence            34567899999999999987654  48898732  11      111111110  111335555433  445679999999


Q ss_pred             CCCCEEEEEEEE
Q psy12695        219 MSDSGIYTCRAK  230 (369)
Q Consensus       219 ~~D~G~Y~C~a~  230 (369)
                      .+|++.|.|...
T Consensus        88 ~eDTAvYYCAR~   99 (124)
T d1yedb1          88 SEDSAVYFCTRW   99 (124)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCcceEEEeccc
Confidence            999999999753

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.14  E-value=0.0016  Score=47.02  Aligned_cols=81  Identities=17%  Similarity=0.332  Sum_probs=51.6

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeEe------eecccccc--cCCcceEEEEee--cceeeEEEcccCC
Q psy12695        154 DVTAEENENVTLSCRATGSPVP--KIKWIFK--EKII------ANISSGLA--NMNKRQYIIKTI--NSLSNLTIVAVTM  219 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~~------~~~~~~~~--~~~~~~~~~~~~--~~~~~L~I~~v~~  219 (369)
                      ...+.+|++++|.|.++|....  .+.|+++  ++.+      ........  ..-+.|+.+...  .+...|.+.+++.
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~   87 (133)
T d1rzfh1           8 AEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRS   87 (133)
T ss_dssp             CEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCC
Confidence            4568899999999999986654  4789873  2211      11111100  111345555443  3456799999999


Q ss_pred             CCCEEEEEEEEeCCc
Q psy12695        220 SDSGIYTCRAKNGAG  234 (369)
Q Consensus       220 ~D~G~Y~C~a~n~~g  234 (369)
                      +|++.|.|......+
T Consensus        88 eDtA~YYCAr~~~~~  102 (133)
T d1rzfh1          88 DDTAVYYCASNSIAG  102 (133)
T ss_dssp             GGCEEEEEEEEECCC
T ss_pred             CCCEEEEeeeccCCc
Confidence            999999997654443

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.12  E-value=0.001  Score=47.21  Aligned_cols=79  Identities=18%  Similarity=0.339  Sum_probs=49.1

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeEe------eecccc-c--c-cCCcceEEEEe--ecceeeEEEcc
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP--KIKWIFK--EKII------ANISSG-L--A-NMNKRQYIIKT--INSLSNLTIVA  216 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~~------~~~~~~-~--~-~~~~~~~~~~~--~~~~~~L~I~~  216 (369)
                      ....+.+|++++|.|.++|....  .+.|+++  ++.+      ...... .  + ..-+.|+.+..  ..+...|.+.+
T Consensus         8 G~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~   87 (121)
T d1nfdf1           8 GGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNR   87 (121)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEES
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecc
Confidence            34568899999999999987654  3789873  3221      110110 0  0 01122333322  23455699999


Q ss_pred             cCCCCCEEEEEEEEe
Q psy12695        217 VTMSDSGIYTCRAKN  231 (369)
Q Consensus       217 v~~~D~G~Y~C~a~n  231 (369)
                      ++.+|++.|.|....
T Consensus        88 L~~eDTAvYYCAr~~  102 (121)
T d1nfdf1          88 LRVDDTAIYYCTRAG  102 (121)
T ss_dssp             CCGGGCEECEEEEEE
T ss_pred             cCCCcceEEEEeccC
Confidence            999999999997654

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.07  E-value=0.0016  Score=46.91  Aligned_cols=77  Identities=18%  Similarity=0.374  Sum_probs=49.8

Q ss_pred             CeeeccCCeEEEEEEeeCCCCC--eEEEEeC--CeEe--e----ecc-ccc---ccCCcceEEEEee--cceeeEEEccc
Q psy12695        154 DVTAEENENVTLSCRATGSPVP--KIKWIFK--EKII--A----NIS-SGL---ANMNKRQYIIKTI--NSLSNLTIVAV  217 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~--~~~~--~----~~~-~~~---~~~~~~~~~~~~~--~~~~~L~I~~v  217 (369)
                      ...+++|++++|.|.++|....  .+.|+++  ++.+  .    ... ...   ...-+.|+.+...  .+...|.|.++
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L   88 (131)
T d3c2ah1           9 GGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSL   88 (131)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceecc
Confidence            3457899999999999986654  5889874  2211  1    001 110   0112345555433  44567999999


Q ss_pred             CCCCCEEEEEEEE
Q psy12695        218 TMSDSGIYTCRAK  230 (369)
Q Consensus       218 ~~~D~G~Y~C~a~  230 (369)
                      +.+|++.|.|...
T Consensus        89 ~~eDTAvYYCAR~  101 (131)
T d3c2ah1          89 KTEDTAVYSCTTD  101 (131)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccCCceEEEEecc
Confidence            9999999999854

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.06  E-value=0.0011  Score=47.55  Aligned_cols=76  Identities=20%  Similarity=0.269  Sum_probs=47.6

Q ss_pred             eeeccCCeEEEEEEeeCCCC---CeEEEEeC--CeEee-----ecccc-cc-cCCcceEEEE--eecceeeEEEcccCCC
Q psy12695        155 VTAEENENVTLSCRATGSPV---PKIKWIFK--EKIIA-----NISSG-LA-NMNKRQYIIK--TINSLSNLTIVAVTMS  220 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~---p~i~W~~~--~~~~~-----~~~~~-~~-~~~~~~~~~~--~~~~~~~L~I~~v~~~  220 (369)
                      ..+.+|++++|.|.++|...   -.+.|+++  ++.+.     ..... .+ ..-+.|+.+.  ...+...|.|.+++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~e   89 (127)
T d3cx5j1          10 GLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTE   89 (127)
T ss_dssp             SEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccc
Confidence            35688999999999998654   25789873  32211     11110 00 0112233322  2345567999999999


Q ss_pred             CCEEEEEEEE
Q psy12695        221 DSGIYTCRAK  230 (369)
Q Consensus       221 D~G~Y~C~a~  230 (369)
                      |++.|.|...
T Consensus        90 DtAvYyCAr~   99 (127)
T d3cx5j1          90 DTATYYCARS   99 (127)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeeee
Confidence            9999999753

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.01  E-value=0.00068  Score=47.07  Aligned_cols=69  Identities=23%  Similarity=0.306  Sum_probs=41.9

Q ss_pred             eccCCeEEEEEEeeCCCC--CeEEEEeCCeEeeecc--cccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        157 AEENENVTLSCRATGSPV--PKIKWIFKEKIIANIS--SGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       157 ~~~G~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      +..|+.++|.|.+.|.-+  ..|.|+++|..+....  ......+...|..     .+.|.+.   ..+.+.|.|.+...
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~-----~s~l~v~---~~~~~~ytC~V~H~   85 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHK-----LSYLTFI---PSDDDIYDCKVEHW   85 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEE-----EEEEEEC---CCTTCCEEEEEECT
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEE-----EEEeEEc---CCCCCEEEEEEEEC
Confidence            456889999999998643  4699999987664211  1111122223332     2345443   45566899999865


Q ss_pred             C
Q psy12695        233 A  233 (369)
Q Consensus       233 ~  233 (369)
                      .
T Consensus        86 s   86 (100)
T d1muja1          86 G   86 (100)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.001  Score=46.01  Aligned_cols=76  Identities=14%  Similarity=0.062  Sum_probs=42.8

Q ss_pred             CccCCCCCeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEE
Q psy12695        147 NIRPITPDVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYT  226 (369)
Q Consensus       147 ~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  226 (369)
                      .+...| ...|..|++|+|.|+... ....+.++|++..........       ...........+.|.+++..|+|.|.
T Consensus         6 sLsa~P-~~~v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~-------~~~~~~~~~a~F~l~~v~~~~~G~Y~   76 (98)
T d1ugna2           6 TLSAQP-SPVVNSGGNVTLQCDSQV-AFDGFILCKEGEDEHPQCLNS-------QPHARGSSRAIFSVGPVSPSRRWWYR   76 (98)
T ss_dssp             EEEEES-CSEEETTCCEEEEEECSS-CCSEEEEEEC------CEEEC-------------CCEEEEEECCCCTTSCEEEE
T ss_pred             EEEeeC-CCccCCCCcEEEEeCCCC-CCCEEEEEECCCcCCcEeeee-------EEcCCCceEEEEEeeecccCCCeEEE
Confidence            333334 345889999999998742 234566677664321100000       00000112357999999999999999


Q ss_pred             EEEEe
Q psy12695        227 CRAKN  231 (369)
Q Consensus       227 C~a~n  231 (369)
                      |.-..
T Consensus        77 C~y~~   81 (98)
T d1ugna2          77 CYAYD   81 (98)
T ss_dssp             EEEEC
T ss_pred             EeeEc
Confidence            98643

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=96.96  E-value=0.00067  Score=46.73  Aligned_cols=69  Identities=16%  Similarity=0.101  Sum_probs=44.1

Q ss_pred             CeeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        154 DVTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ...+..|++|+|.|+... ....+.+++++.........        ...........+.|.+++..|+|.|.|.-..
T Consensus        10 ~~~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~~~--------~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   78 (96)
T d1nkra1          10 GPLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLI--------GEHHDGVSKANFSISRMTQDLAGTYRCYGSV   78 (96)
T ss_dssp             CSEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEE--------CEEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred             CCccCCCCcEEEEECCCC-CCCEEEEEECCCcCCceeee--------eeecCCceEEEEEEcccCcccCeEEEEEEEc
Confidence            466889999999999743 34567888876422110000        0000011235799999999999999997643

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00034  Score=48.35  Aligned_cols=66  Identities=17%  Similarity=0.261  Sum_probs=43.1

Q ss_pred             eeeccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        155 VTAEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ..|..|++|+|.|+.. .+...+.+++++..........          ........+.|.+++..|+|.|.|....
T Consensus        13 ~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~----------~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1          13 SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIP----------QELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSC----------HHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEcc----------CCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            5578999999999963 3445677777764321100000          0011235799999999999999998643

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0016  Score=45.38  Aligned_cols=74  Identities=16%  Similarity=0.257  Sum_probs=44.2

Q ss_pred             cCCeEEEEEEeeCCCCC--eEEEEeCCeEeeeccc-c-cccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695        159 ENENVTLSCRATGSPVP--KIKWIFKEKIIANISS-G-LANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG  234 (369)
Q Consensus       159 ~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g  234 (369)
                      .++.++|.|.+.|.-+.  .|.|+++|..+..... . ........|.+     .+.|.|..-.-.....|+|.+.....
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~-----~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMA-----SSYLTLTARAWERHSSYSCQVTHEGH   93 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEE-----EEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEE-----EEEEEECHHHhCCCCEEEEEEEECCc
Confidence            46678999999886433  5999999876543211 1 11112223332     45666654443445589999987654


Q ss_pred             eEE
Q psy12695        235 EVF  237 (369)
Q Consensus       235 ~~~  237 (369)
                      ...
T Consensus        94 ~~~   96 (102)
T d1q0xl2          94 SSN   96 (102)
T ss_dssp             EEE
T ss_pred             cEe
Confidence            433

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.78  E-value=0.00036  Score=49.29  Aligned_cols=77  Identities=22%  Similarity=0.382  Sum_probs=48.1

Q ss_pred             CCeeeccCCeEEEEEEeeCCCC--CeEEEEeCC--e---Eeeec--cccc-c--cCCcceEEEEe--ecceeeEEEcccC
Q psy12695        153 PDVTAEENENVTLSCRATGSPV--PKIKWIFKE--K---IIANI--SSGL-A--NMNKRQYIIKT--INSLSNLTIVAVT  218 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~--p~i~W~~~~--~---~~~~~--~~~~-~--~~~~~~~~~~~--~~~~~~L~I~~v~  218 (369)
                      ....+.+|++++|.|.++|...  -.+.|+++.  +   -+...  .... .  ..-+.|+.+..  ..+...|.|.+++
T Consensus         8 G~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~   87 (117)
T d1b2wh1           8 GGGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLR   87 (117)
T ss_dssp             CCCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeecccc
Confidence            3456789999999999987543  357898742  1   11111  1110 0  00123455443  2345679999999


Q ss_pred             CCCCEEEEEEE
Q psy12695        219 MSDSGIYTCRA  229 (369)
Q Consensus       219 ~~D~G~Y~C~a  229 (369)
                      .+|++.|.|..
T Consensus        88 ~eDTAvYYCAr   98 (117)
T d1b2wh1          88 PEDTAVYYCAR   98 (117)
T ss_dssp             GGGCEEEECCE
T ss_pred             CCcceEEEEcc
Confidence            99999999964

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.0021  Score=44.46  Aligned_cols=69  Identities=16%  Similarity=0.287  Sum_probs=41.6

Q ss_pred             eccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeeccccc-ccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        157 AEENENVTLSCRATGSPVP--KIKWIFKEKIIANISSGL-ANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       157 ~~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      +..|+.++|.|.+.|.-+.  .|.|.++|..+....... ...+...|..     .+.|.+   ..++.+.|+|.+....
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~-----~s~l~v---~~~~~~~ytC~V~H~s   87 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL-----LYYTEF---TPTEKDEYACRVNHVT   87 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEE-----EEEEEE---CCCSSCCEEEEEECTT
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEE-----EEEeEE---CCCCCCEEEEEEEeCC
Confidence            3568899999999996443  589999998764322111 1112222221     233444   4556668999987643

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.001  Score=46.42  Aligned_cols=72  Identities=13%  Similarity=0.235  Sum_probs=41.9

Q ss_pred             cCCeEEEEEEeeCCCCC--eEEEEeCCeEeeeccc--ccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695        159 ENENVTLSCRATGSPVP--KIKWIFKEKIIANISS--GLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG  234 (369)
Q Consensus       159 ~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g  234 (369)
                      .++.++|.|.+.|..+.  .|.|+++|..+.....  .........|..     .+.|.|..-.-.....|+|.+.....
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~-----~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAA-----SSYLSLTPEQWKSHRSYSCQVTHEGS   93 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEE-----EEEEEECHHHHHHSSCEEEEEEETTE
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEE-----EEEEEECHHHhCCCCEEEEEEEECCc
Confidence            46779999999984433  5899999876643211  111112223332     34566644332223469999988654


Q ss_pred             e
Q psy12695        235 E  235 (369)
Q Consensus       235 ~  235 (369)
                      .
T Consensus        94 ~   94 (102)
T d1rzfl2          94 T   94 (102)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=96.49  E-value=0.0052  Score=42.44  Aligned_cols=67  Identities=15%  Similarity=0.276  Sum_probs=40.6

Q ss_pred             ccCCeEEEEEEeeCC-CC-CeEEEEeCCeEeeecc--cccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        158 EENENVTLSCRATGS-PV-PKIKWIFKEKIIANIS--SGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~-p~-p~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ..|+..+|.|.+.|. |. ..|.|+++|..+....  ......+...|.+     .+.|.+..   .+...|+|.+...
T Consensus        17 ~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~-----~S~L~v~~---~~~~~ytC~V~H~   87 (101)
T d1fnga1          17 NLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRK-----FHYLTFLP---STDDFYDCEVDHW   87 (101)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEE-----EEEEEECC---CTTCCEEEEEECT
T ss_pred             cCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEE-----EEEeEEcC---CCCCEEEEEEEEC
Confidence            457788999999985 33 3699999998764321  1111122223332     34555543   4445799999765

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0014  Score=45.98  Aligned_cols=71  Identities=15%  Similarity=0.336  Sum_probs=42.0

Q ss_pred             ccCCeEEEEEEeeCCCC--CeEEEEeCCeEeeeccc---ccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        158 EENENVTLSCRATGSPV--PKIKWIFKEKIIANISS---GLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ..++.++|.|.+.|.-+  ..|.|+++|..+.....   .........|..     .+.|.|..-.-.....|+|.+...
T Consensus        17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~-----~S~L~v~~~~W~~g~~ytC~V~H~   91 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFV-----FSRLEVTRAEWEQKDEFICRAVHE   91 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEE-----EEEEEECHHHHTTGGGEEEEEECT
T ss_pred             hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEE-----EEEEEECHHHcCCCCEEEEEEEEC
Confidence            45678999999988433  46999999887543210   011112223332     456776544433445799999764


Q ss_pred             C
Q psy12695        233 A  233 (369)
Q Consensus       233 ~  233 (369)
                      .
T Consensus        92 ~   92 (105)
T d1fp5a2          92 A   92 (105)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.41  E-value=0.0046  Score=42.48  Aligned_cols=69  Identities=26%  Similarity=0.330  Sum_probs=41.9

Q ss_pred             eccCCeEEEEEEeeCCCC--CeEEEEeCCeEeeeccc--ccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        157 AEENENVTLSCRATGSPV--PKIKWIFKEKIIANISS--GLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       157 ~~~G~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ...++.++|.|.+.|.-+  ..|+|+++|..+.....  .....++..|..     .+.|.+   ...+...|.|.+...
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~-----~s~L~v---~~~~~~~ytC~V~H~   85 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQT-----LSHLAL---TPSYGDTYTCVVEHI   85 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEE-----EEEEEE---CCCTTCCEEEEEECT
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEE-----EEEeEc---CCCCCCEEEEEEEeC
Confidence            455778999999998633  46999999987643221  111122223332     334555   344455799999875


Q ss_pred             C
Q psy12695        233 A  233 (369)
Q Consensus       233 ~  233 (369)
                      .
T Consensus        86 s   86 (98)
T d1hdmb1          86 G   86 (98)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00059  Score=61.02  Aligned_cols=34  Identities=32%  Similarity=0.331  Sum_probs=17.4

Q ss_pred             CccEEEeecceeCh-------hhccCCcccCeeeccCCccc
Q psy12695         67 GTQVLDLSDNFLDR-------YTFRKLINLVELDLSYNQIQ  100 (369)
Q Consensus        67 ~~~~L~l~~n~i~~-------~~f~~l~~L~~L~Ls~N~l~  100 (369)
                      .+++|+|++|.|..       .++..+++|++|||++|+|+
T Consensus        28 ~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~   68 (460)
T d1z7xw1          28 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG   68 (460)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred             CCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCC
Confidence            45555555555542       23445555555555555553

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.015  Score=39.33  Aligned_cols=70  Identities=21%  Similarity=0.332  Sum_probs=46.5

Q ss_pred             CCCeeeccCCeEEEEEEeeCCCCCeE-EEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEE
Q psy12695        152 TPDVTAEENENVTLSCRATGSPVPKI-KWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAK  230 (369)
Q Consensus       152 ~~~~~~~~G~~~~l~C~~~g~p~p~i-~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  230 (369)
                      +..+.+.+|+.+.+.|.++ +|...+ .|..+++......        ..+..   ....-++|.+++..++|.|.|.|.
T Consensus        12 p~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g--------~~v~~---Dpk~Gf~I~~~~~~~~g~y~C~a~   79 (95)
T d1fltx_          12 PEIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDG--------KRIIW---DSRKGFIISNATYKEIGLLTCEAT   79 (95)
T ss_dssp             CEEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCS--------SSEEE---ETTTEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCC--------CEEEE---CCCCCEEEeCCCcccCeEEEEEEE
Confidence            3456789999999999996 455554 4555665443211        11111   112358899999999999999997


Q ss_pred             eCC
Q psy12695        231 NGA  233 (369)
Q Consensus       231 n~~  233 (369)
                      -..
T Consensus        80 ~~g   82 (95)
T d1fltx_          80 VNG   82 (95)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            663

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.39  E-value=0.007  Score=41.62  Aligned_cols=68  Identities=19%  Similarity=0.363  Sum_probs=41.0

Q ss_pred             eccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeecc--cccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        157 AEENENVTLSCRATGSPVP--KIKWIFKEKIIANIS--SGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       157 ~~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      +..|+..+|.|.+.|.-+.  .|+|+++|..+....  ......+...|..     .+.|.+.   .++...|.|.+...
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~-----~s~l~v~---~~~~~~ytC~V~H~   87 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFK-----ISYLTFL---PSADEIYDCKVEHW   87 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEE-----EEEEEEC---CCTTCCEEEEEECT
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEE-----EEEEEEc---CCCCCEEEEEEEeC
Confidence            3467788999999986433  589999998764321  1111122223322     3345554   34455799999764

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.37  E-value=0.0035  Score=42.43  Aligned_cols=66  Identities=15%  Similarity=0.248  Sum_probs=38.7

Q ss_pred             cCCeEEEEEEeeCC-CCC-eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        159 ENENVTLSCRATGS-PVP-KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       159 ~G~~~~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      .++.++|.|.+.|. |.. .|+|++++.............+...|..     .+.|.+.   ..+...|+|.+.-.
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~-----~S~l~v~---~~~~~~ytC~V~H~   81 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHA-----WSLLEVK---RGDEHHYQCQVEHE   81 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEE-----EEEEEEE---TTCGGGEEEEEECT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeE-----EEEEEEC---CCCCCEEEEEEEeC
Confidence            35688999999985 433 5999999976543221111122222322     3345553   34445799998754

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.35  E-value=0.0041  Score=42.88  Aligned_cols=67  Identities=22%  Similarity=0.368  Sum_probs=39.6

Q ss_pred             ccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeecccccc-cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        158 EENENVTLSCRATGSPVP--KIKWIFKEKIIANISSGLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ..|+.++|.|.+.|.-+.  .|+|+++|..+........ ..+...|..     .+.|.+   ...+.+.|+|.+...
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~-----~s~l~v---~~~~~~~ytC~V~H~   85 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYI-----LAHTEF---TPTETDTYACRVKHD   85 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEE-----EEEEEE---CCCSSCCEEEEEECT
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEE-----EEEeEe---cCcCCCEEEEEEEeC
Confidence            468889999999985433  5899999976543221111 111112221     234444   445566899998764

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.34  E-value=0.0035  Score=41.62  Aligned_cols=55  Identities=20%  Similarity=0.400  Sum_probs=39.9

Q ss_pred             eccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCC-CCCEEEEEEEEe
Q psy12695        157 AEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM-SDSGIYTCRAKN  231 (369)
Q Consensus       157 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n  231 (369)
                      -..|.+|+|+|...+.  ..|.|.+++..+...                  ....|.+.+... +++|.|.|...+
T Consensus        11 SISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~------------------~~~~L~L~~FSE~e~SGyY~C~~~~   66 (100)
T d1jbja2          11 SISGTSVELTCPLDSD--ENLKWEKNGQELPQK------------------HDKHLVLQDFSEVEDSGYYVCYTPA   66 (100)
T ss_dssp             EEETTEEEEECSSCCC--TTCEEEETTEEECSC------------------CCSEEEEESCCTTTSCEEEEEECSS
T ss_pred             EEeCCEEEEECCCCCC--CceEEeeccccCCCC------------------CCcEEEEccccccccCcceEEecCC
Confidence            4569999999987653  469999988776421                  123577777655 799999997543

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0049  Score=41.98  Aligned_cols=67  Identities=19%  Similarity=0.311  Sum_probs=39.4

Q ss_pred             ccCCeEEEEEEeeCC-CCC-eEEEEeCCeEeeeccc--ccc-cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        158 EENENVTLSCRATGS-PVP-KIKWIFKEKIIANISS--GLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ..++.++|.|.+.|. |.. .|+|+++|..+.....  ... ..+...|..     ...|.+   ...+...|+|.+...
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~-----~s~l~v---~~~~~~~ytC~V~H~   84 (94)
T d1de4a1          13 VTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQG-----WITLAV---PPGEEQRYTCQVEHP   84 (94)
T ss_dssp             ECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEE-----EEEEEE---CTTCGGGEEEEEECT
T ss_pred             CCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEE-----EEEEEE---CCCCCCEEEEEEEeC
Confidence            346778999999994 544 6999999987643211  111 111112221     223444   445556799999865

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=96.26  E-value=0.0065  Score=41.71  Aligned_cols=68  Identities=15%  Similarity=0.317  Sum_probs=37.4

Q ss_pred             ccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeecc--cccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        158 EENENVTLSCRATGSPVP--KIKWIFKEKIIANIS--SGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ..|+..+|.|.+.|..++  .|.|+++|..+....  ......+...|.        ......+...+.+.|+|.+....
T Consensus        16 ~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~--------~~s~l~~~~~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          16 PLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQ--------TLVMLETVPRSGEVYTCQVEHPS   87 (98)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEE--------EEEEEECCCCTTCEEEEEEECTT
T ss_pred             ccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEE--------EEEEeeEcCCCCCEEEEEEEECC
Confidence            346677899999985444  599999987664321  111111222222        22233445667779999997653

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0045  Score=43.09  Aligned_cols=75  Identities=17%  Similarity=0.259  Sum_probs=43.2

Q ss_pred             ccCCeEEEEEEeeC-CCCC-eEEEEeCCeEeeecccccc-cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695        158 EENENVTLSCRATG-SPVP-KIKWIFKEKIIANISSGLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG  234 (369)
Q Consensus       158 ~~G~~~~l~C~~~g-~p~p-~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g  234 (369)
                      ..+..++|.|.+.| .|.. .|.|+++|..+........ ......|.     ..+.|.|..-.-.....|+|.+.....
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~-----~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELAS-----TQSELTLSQKHWLSDRTYTCQVTYQGH   93 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEE-----EEEEEEEEHHHHHTTCCEEEEEEETTE
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEE-----EEEEEEECHHHcCCCCEEEEEEEECCE
Confidence            45567999999988 4444 5899999877653211110 01111121     134566654332334569999998764


Q ss_pred             eEE
Q psy12695        235 EVF  237 (369)
Q Consensus       235 ~~~  237 (369)
                      ...
T Consensus        94 t~~   96 (104)
T d1o0va1          94 TFE   96 (104)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            433

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0014  Score=54.95  Aligned_cols=78  Identities=18%  Similarity=0.203  Sum_probs=53.0

Q ss_pred             CCCccEEEeecceeChh----hccCCcccCeeeccCCcccccCCcccccccccccccccc-cceecccC-CcccccCcCc
Q psy12695         65 DVGTQVLDLSDNFLDRY----TFRKLINLVELDLSYNQIQFVPSHILDSILELRELKLSG-NPIQKITH-EAFINVPKLN  138 (369)
Q Consensus        65 ~~~~~~L~l~~n~i~~~----~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~-~~f~~l~~l~  138 (369)
                      +..+++|+|+++.|...    .|.++++|++|+|+++.++......+..+++|+.|+|++ +.++...- ..+.++++|.
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            34788999998888743    467888999999999988764445567778899999988 45553211 1233455555


Q ss_pred             cccc
Q psy12695        139 LEDF  142 (369)
Q Consensus       139 ~~~~  142 (369)
                      ..++
T Consensus       125 ~L~l  128 (284)
T d2astb2         125 ELNL  128 (284)
T ss_dssp             EEEC
T ss_pred             cccc
Confidence            5444

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.10  E-value=0.02  Score=39.52  Aligned_cols=70  Identities=16%  Similarity=0.279  Sum_probs=41.5

Q ss_pred             eccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeecccccc-cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        157 AEENENVTLSCRATGSPVP--KIKWIFKEKIIANISSGLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       157 ~~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      +..|+..+|.|.+.|.-+.  .|.|++++........... ..+...|..     .+.|.+.   .+|...|.|.+....
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~-----~S~L~v~---~~~~~~ytC~V~H~~   86 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQA-----FSYLNFT---PEPSDIFSCIVTHEP   86 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEE-----EEEEEEC---CCTTCCEEEEEEETT
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEE-----EEEEEEe---cCCCCEEEEEEEeCC
Confidence            3568888999999995443  5899999876543221111 111222222     3345553   345557999998764


Q ss_pred             c
Q psy12695        234 G  234 (369)
Q Consensus       234 g  234 (369)
                      -
T Consensus        87 l   87 (103)
T d1hdma1          87 D   87 (103)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.10  E-value=0.0042  Score=43.53  Aligned_cols=70  Identities=17%  Similarity=0.227  Sum_probs=41.2

Q ss_pred             cCCeEEEEEEeeCCCCC--eEEEEeCCeEeeecc---cccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        159 ENENVTLSCRATGSPVP--KIKWIFKEKIIANIS---SGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       159 ~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      .++.++|.|.+.|.-+.  .|.|.++|..+....   ..........|.+     .+.|.|..-.-.....|+|.+....
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~-----~S~L~v~~~~W~~g~~ytC~V~H~~   93 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM-----SSTLTLTKDEYERHNSYTCEATHKT   93 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEE-----EEEEEEEHHHHHTCCEEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEE-----EEEEEECHHHhCCCCEEEEEEEECC
Confidence            46789999999885433  699999987764321   1111112223333     3456665443223458999998644

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0092  Score=40.53  Aligned_cols=68  Identities=15%  Similarity=0.260  Sum_probs=39.7

Q ss_pred             ccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeecccccc-cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        158 EENENVTLSCRATGSPVP--KIKWIFKEKIIANISSGLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ..|+.++|.|.+.|.-+.  .|.|++++........... ..+...|..     .+.|.+   ...+...|+|.+....
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~-----~s~l~~---~~~~~~~ytC~V~H~s   83 (94)
T d1t7va1          13 APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQS-----WVVVAV---PPQDTAPYSCHVQHSS   83 (94)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEE-----EEEEEE---CTTCCSCEEEEEEETT
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEE-----EEEeEe---CCCCCCEEEEEEEECC
Confidence            357899999999995443  5899999976543211111 111222222     223443   4455557999997653

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.90  E-value=0.022  Score=39.19  Aligned_cols=72  Identities=18%  Similarity=0.303  Sum_probs=41.6

Q ss_pred             ccCCeEEEEEEeeCC-CCC--eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695        158 EENENVTLSCRATGS-PVP--KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG  234 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~-p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g  234 (369)
                      ..++.++|.|.+.|. |..  .+.|.+++.................|..     .+.|.|..-.-.....|+|.+.....
T Consensus        17 ~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~-----~S~L~v~~~~W~~~~~ytC~V~H~s~   91 (102)
T d2fbjh2          17 LSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTM-----SNQLTLPAVECPEGESVKCSVQHDSN   91 (102)
T ss_dssp             SCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEE-----EEEEEECGGGSCTTCEEEEEEEETTS
T ss_pred             cCCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEE-----EEEEEEeHHHccCCCEEEEEEEECCC
Confidence            346789999999994 543  4678776654332211111112223332     45677766554444579999977543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.00098  Score=59.50  Aligned_cols=79  Identities=23%  Similarity=0.228  Sum_probs=56.7

Q ss_pred             eEEEecCCCCCc-----cCCCC--CCCccEEEeecceeChh-------hcc-CCcccCeeeccCCcccccC----Ccccc
Q psy12695         48 ETVLCKAKNFTT-----IPEQL--DVGTQVLDLSDNFLDRY-------TFR-KLINLVELDLSYNQIQFVP----SHILD  108 (369)
Q Consensus        48 ~~~~c~~~~l~~-----ip~~~--~~~~~~L~l~~n~i~~~-------~f~-~l~~L~~L~Ls~N~l~~i~----~~~f~  108 (369)
                      ++++..+++++.     +...+  -+.++.|+|++|+|...       .|. ...+|+.|+|++|+|+...    ..+|.
T Consensus        30 ~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~  109 (460)
T d1z7xw1          30 QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR  109 (460)
T ss_dssp             SEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT
T ss_pred             CEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhh
Confidence            357777888762     33222  24699999999998632       222 2357999999999997643    23567


Q ss_pred             cccccccccccccceecc
Q psy12695        109 SILELRELKLSGNPIQKI  126 (369)
Q Consensus       109 ~l~~L~~L~L~~N~l~~~  126 (369)
                      .+++|+.|+|++|.|...
T Consensus       110 ~~~~L~~L~L~~N~i~~~  127 (460)
T d1z7xw1         110 TLPTLQELHLSDNLLGDA  127 (460)
T ss_dssp             SCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccchhh
Confidence            788999999999998754

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.006  Score=42.73  Aligned_cols=75  Identities=20%  Similarity=0.318  Sum_probs=43.5

Q ss_pred             CeeeccCCeEEEEEEeeCC-CCC-eEEEEeCCeEeeeccccc------ccCCcceEEEEeecceeeEEEcccCCCCCEEE
Q psy12695        154 DVTAEENENVTLSCRATGS-PVP-KIKWIFKEKIIANISSGL------ANMNKRQYIIKTINSLSNLTIVAVTMSDSGIY  225 (369)
Q Consensus       154 ~~~~~~G~~~~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  225 (369)
                      ...+..|+.++|.|.+.|. |.. .|.|+++|..+.......      ...+...|.+     .+.|.|..-.-.....|
T Consensus        14 ~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~-----~S~L~v~~~~w~~g~~y   88 (108)
T d1ow0a2          14 SEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAV-----TSILRVAAEDWKKGDTF   88 (108)
T ss_dssp             TTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEE-----EEEEEEEHHHHHHTCCE
T ss_pred             HHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEE-----EEEEEEcHHHhCCCCEE
Confidence            3345678899999999885 433 699999987764321100      0112222322     34566644332234479


Q ss_pred             EEEEEeCC
Q psy12695        226 TCRAKNGA  233 (369)
Q Consensus       226 ~C~a~n~~  233 (369)
                      .|.+....
T Consensus        89 tC~V~H~s   96 (108)
T d1ow0a2          89 SCMVGHEA   96 (108)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            99997643

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0064  Score=42.08  Aligned_cols=70  Identities=17%  Similarity=0.367  Sum_probs=41.0

Q ss_pred             cCCeEEEEEEeeCC-CCC-eEEEEeCCeEeeeccccc-ccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        159 ENENVTLSCRATGS-PVP-KIKWIFKEKIIANISSGL-ANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       159 ~G~~~~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      .++.++|.|.+.|. |.. .|.|++++.......... ....+..|..     .+.|.|..-.-.....|+|.+....
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~-----~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFL-----YSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEE-----EEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEE-----EEEEEECHHHcCCCCEEEEEEEeCC
Confidence            46789999999884 433 699999987654322111 1112222322     3456665433233346999998653

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=95.63  E-value=0.006  Score=42.24  Aligned_cols=70  Identities=20%  Similarity=0.334  Sum_probs=40.0

Q ss_pred             cCCeEEEEEEeeCC-CC-CeEEEEeCCeEeeeccccc-ccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        159 ENENVTLSCRATGS-PV-PKIKWIFKEKIIANISSGL-ANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       159 ~G~~~~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      .++.++|.|.+.|. |. ..|.|.++|.......... .......|.+     .+.|.|..-.-.....|+|.+....
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~-----~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFM-----YSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEE-----EEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEE-----EEEEEECHHHcCCCCEEEEEEEeCC
Confidence            57789999999884 43 3699999986543211111 1112223322     3456664433223347999997643

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.01  Score=41.39  Aligned_cols=70  Identities=16%  Similarity=0.377  Sum_probs=41.3

Q ss_pred             cCCeEEEEEEeeCC-CC-CeEEEEeCCeEeeeccccc---ccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        159 ENENVTLSCRATGS-PV-PKIKWIFKEKIIANISSGL---ANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       159 ~G~~~~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      .++.++|.|.+.|. |. ..|.|+++|..........   .......|.+     .+.|.|..-.-.....|+|.+....
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~-----~S~L~v~~~~W~~~~~ytC~V~H~~   93 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSL-----SSTLTLSKADYEKHKVYACEVTHQG   93 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEE-----EEEEEEEHHHHTTCCEEEEEEECTT
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEE-----EEEEEECHHHhCCCCEEEEEEEECC
Confidence            46789999999885 43 3699999987654321110   1111223332     4567665443233347999998754

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.57  E-value=0.0026  Score=44.38  Aligned_cols=71  Identities=15%  Similarity=0.280  Sum_probs=42.1

Q ss_pred             cCCeEEEEEEeeCC-CCC-eEEEEeCCeEeeeccccc-ccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCc
Q psy12695        159 ENENVTLSCRATGS-PVP-KIKWIFKEKIIANISSGL-ANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAG  234 (369)
Q Consensus       159 ~G~~~~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g  234 (369)
                      .++.++|.|.+.|. |.. .|.|.+++..+....... .......|..     .+.|.|..-.-.+...|+|.+.....
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~-----~S~l~v~~~~w~~~~~ytC~V~H~~~   92 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMT-----SSYLSLTADQWKSHNRVSCQVTHEGE   92 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEE-----EEBCCEEHHHHHTCSCEEEEEECTTT
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEE-----EEEEEEcHHHcCCCCEEEEEEEECCC
Confidence            46778999999884 432 699999998776432211 1112222322     34455544333344579999987653

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.55  E-value=0.0061  Score=42.19  Aligned_cols=69  Identities=17%  Similarity=0.343  Sum_probs=40.5

Q ss_pred             cCCeEEEEEEeeCCCCC--eEEEEeCCeEeeecccccc-cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        159 ENENVTLSCRATGSPVP--KIKWIFKEKIIANISSGLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       159 ~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      .++.++|.|.+.|.-+.  .|.|.+++........... ...+..|..     .+.|.|..-.-.....|+|.+...
T Consensus        18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~-----~S~L~v~~~~w~~~~~ytC~V~H~   89 (102)
T d1i1ca2          18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFL-----YSKLNVKKETWQQGNTFTCSVLHE   89 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEE-----EEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             cCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEE-----EEEEEECHHHhCCCCEEEEEEEeC
Confidence            35688999999885543  5999999876442211111 111222322     345666554433444799999764

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.016  Score=37.86  Aligned_cols=63  Identities=21%  Similarity=0.378  Sum_probs=41.6

Q ss_pred             eccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCC-CCCEEEEEEEEe
Q psy12695        157 AEENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTM-SDSGIYTCRAKN  231 (369)
Q Consensus       157 ~~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n  231 (369)
                      -..|.+|.|+|.-.  ....|.|.+++..+........          .......|.+.+... +++|.|.|.+..
T Consensus         7 sISGTtV~LTCP~~--~~~~i~W~~n~~~~~~~~~~~~----------~~~~~~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           7 SISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKN----------IGSDEDHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EEETTEEEEECSSC--TTSCEEEEETTEEESSSCSCTT----------EEEETTEEEETTCCHHHHCEEEEEEETT
T ss_pred             EEeCCEEEEECCCC--CCCceeeeeccccccCCCcccc----------cccccceEEecccCccccCceEEEEcCC
Confidence            35699999999642  3467999999876643211100          011234678888776 789999999854

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.41  E-value=0.0075  Score=41.62  Aligned_cols=69  Identities=17%  Similarity=0.355  Sum_probs=39.8

Q ss_pred             cCCeEEEEEEeeCC-CC-CeEEEEeCCeEeeeccccc-ccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        159 ENENVTLSCRATGS-PV-PKIKWIFKEKIIANISSGL-ANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       159 ~G~~~~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ..+.++|.|.+.|. |. ..|.|++++.......... ....+..|.+     .+.|.|..-.-.....|+|.+...
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~-----~S~L~v~~~~w~~~~~ytC~V~H~   88 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFV-----YSKLNVQKSNWEAGNTFTCSVLHE   88 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEE-----EEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEE-----EEEEEECHHHhCCCCEEEEEEEEC
Confidence            45678999999984 43 3599999987654321111 1112222322     345666443323345799999764

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=95.41  E-value=0.015  Score=39.65  Aligned_cols=66  Identities=18%  Similarity=0.384  Sum_probs=38.9

Q ss_pred             cCCeEEEEEEeeC-CCCC-eEEEEeCCeEeeeccccc-ccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        159 ENENVTLSCRATG-SPVP-KIKWIFKEKIIANISSGL-ANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       159 ~G~~~~l~C~~~g-~p~p-~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      .++.++|.|.+.| .|.. .|.|++++.......... ...+...|..     .+.|.+..   +|...|+|.+...
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~-----~S~L~v~~---~~~~~ytC~V~H~   83 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYL-----RATLDVAD---GEAAGLSCRVKHS   83 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEE-----EEEEEEEG---GGCTTEEEEEEEG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEE-----EEEEEEeC---ccCCEEEEEEEeC
Confidence            4568999999988 4444 599999887553321111 1122223332     34566543   3444799998764

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=95.31  E-value=0.021  Score=38.94  Aligned_cols=68  Identities=21%  Similarity=0.308  Sum_probs=36.6

Q ss_pred             ccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeeccc--ccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        158 EENENVTLSCRATGSPVP--KIKWIFKEKIIANISS--GLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ..|+..+|.|.+.|.-+.  .|.|+++|..+.....  .....+...|..     .+.|.+   ...+...|.|.+....
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~-----~s~l~v---~~~~~~~ytC~V~H~s   85 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQI-----LVMLEM---TPQRGDVYTCHVEHPS   85 (97)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEE-----EEEEEC---CSCTTCCEEEEEECTT
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEE-----EEEecc---CCCCCCEEEEEEEeCC
Confidence            346777899999885543  5999999876543211  111122222322     223443   4455668999987653

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.22  E-value=0.019  Score=38.39  Aligned_cols=67  Identities=15%  Similarity=0.288  Sum_probs=39.4

Q ss_pred             ccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeeccc--ccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        158 EENENVTLSCRATGSPVP--KIKWIFKEKIIANISS--GLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ..++.++|.|.+.|..+.  .|+|+++|..+.....  .....+...|..     .+.|.+..   .+...|+|.+.-.
T Consensus        13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~-----~s~l~v~~---~~~~~ytC~V~H~   83 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQK-----WASVVVPL---GKEQYYTCHVYHQ   83 (89)
T ss_dssp             SCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEE-----EEEEEEES---STTTTCEEEEECS
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEE-----EEEEEecC---cCCCEEEEEEEEC
Confidence            456789999999996555  4799999987643211  111122222322     34455543   2333699998643

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.17  E-value=0.011  Score=40.84  Aligned_cols=72  Identities=21%  Similarity=0.286  Sum_probs=40.6

Q ss_pred             ccCCeEEEEEEeeCC-CC-CeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCce
Q psy12695        158 EENENVTLSCRATGS-PV-PKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE  235 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~  235 (369)
                      ..++.++|.|.+.|. |. ..|.|..++........... .....|..     .+.|.|..-.- +.|.|+|.+......
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~-~~~g~~s~-----~S~L~v~~~~w-~~~~ytC~V~H~~~~   90 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAV-LQSGLYTL-----SSNTTVASGTW-PSASVTCLVAHPKSS   90 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCE-EETTEEEE-----EEEEEEETTTT-TTSCCEEEEEEGGGT
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeee-cCCCCEEE-----EEEEEEchhhc-CCCeEEEEEEeCCCC
Confidence            457899999999884 43 35999776643211111000 11112221     35677654433 367899999876554


Q ss_pred             E
Q psy12695        236 V  236 (369)
Q Consensus       236 ~  236 (369)
                      .
T Consensus        91 ~   91 (101)
T d1kcvh2          91 T   91 (101)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.054  Score=37.34  Aligned_cols=79  Identities=15%  Similarity=0.331  Sum_probs=43.7

Q ss_pred             ccCCeEEEEEEeeCC-CC-CeEEEEeCCeEeeecccccc-cCCcceEEEEeecceeeEEEcccCCC--CCEEEEEEEEeC
Q psy12695        158 EENENVTLSCRATGS-PV-PKIKWIFKEKIIANISSGLA-NMNKRQYIIKTINSLSNLTIVAVTMS--DSGIYTCRAKNG  232 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~--D~G~Y~C~a~n~  232 (369)
                      ...+.++|.|.+.|. |. ..|.|.+++........... ......|..     .+.|.|..-.-.  ....|+|.+...
T Consensus        19 ~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~-----~S~L~v~~~eW~~~~~~~ytC~V~H~   93 (105)
T d1dn0b2          19 SDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAA-----TSQVLLPSKDVMAGTDEHVVCKVQHP   93 (105)
T ss_dssp             --CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEE-----EEEEEECTTCC---CCCEEEEEEECT
T ss_pred             CCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEE-----EEEEEEcHHHhccCCCCEEEEEEEEC
Confidence            346778999999884 43 35999998865543211110 011112221     345666543321  224799999988


Q ss_pred             CceEEEEEE
Q psy12695        233 AGEVFTNIS  241 (369)
Q Consensus       233 ~g~~~~~~~  241 (369)
                      .+.....+.
T Consensus        94 ~~~~~~~v~  102 (105)
T d1dn0b2          94 NGNKEKNVP  102 (105)
T ss_dssp             TCCEEEEEE
T ss_pred             CCCEEeEEe
Confidence            776555543

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.012  Score=40.73  Aligned_cols=72  Identities=11%  Similarity=0.178  Sum_probs=39.9

Q ss_pred             cCCeEEEEEEeeCCCCC--eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCceE
Q psy12695        159 ENENVTLSCRATGSPVP--KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGEV  236 (369)
Q Consensus       159 ~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~  236 (369)
                      .++.++|.|.+.|.-+.  .|.|..++.............+...|.+     .+.|.|..-.- ..+.|+|.+....+..
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~-----~S~L~v~~~~w-~~~~ytC~V~H~~~~~   92 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL-----SSVVTVPSSSL-GTQTYICNVNHKPSNT   92 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEE-----EEEEEEEGGGG-GTCCCEEEEEEGGGTE
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEE-----EEEEEECcccc-CCCeEEEEEEeCCCCE
Confidence            46789999999885433  5899766543111111111112223332     45667654432 2346999998866543

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.019  Score=39.01  Aligned_cols=66  Identities=15%  Similarity=0.263  Sum_probs=38.4

Q ss_pred             cCCeEEEEEEeeCCCCC--eEEEEeCCeEeeecccc--cccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        159 ENENVTLSCRATGSPVP--KIKWIFKEKIIANISSG--LANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       159 ~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      .++.++|.|.+.|..+.  .|+|+++|..+......  ....+...+..     .+.|.+.   ..+...|+|.+...
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~-----~s~l~v~---~~~~~~ytC~V~H~   83 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQK-----WAAVVVP---SGEEQRYTCHVQHE   83 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEE-----EEEEEEE---TTCGGGEEEEEECT
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEE-----EEEEEEE---cCCCCEEEEEEEEC
Confidence            46689999999996655  47999999766532211  11112222221     2334443   34445799998754

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.82  E-value=0.014  Score=40.29  Aligned_cols=72  Identities=21%  Similarity=0.255  Sum_probs=37.7

Q ss_pred             ccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCCce
Q psy12695        158 EENENVTLSCRATGSPVP--KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGAGE  235 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~  235 (369)
                      ..++.++|.|.+.|.-+.  .|.|..++......... .......|..     .+.|.|..-.- +.+.|+|.+....+.
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~-~~~~~g~ys~-----~S~L~v~~~~w-~~~~ytC~V~H~~~~   90 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFP-AVLQSDLYTL-----SSSVTVTSSTW-PSQSITCNVAHPASS   90 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECC-CEEETTEEEE-----EEEEEECTTTT-TTSCCEEEEEEGGGT
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecc-cccCCCCEEE-----EEEEEEehhHc-CCceEEEEEEECCCC
Confidence            357889999999885433  58996655321100000 0011122222     35666655543 356799999886654


Q ss_pred             E
Q psy12695        236 V  236 (369)
Q Consensus       236 ~  236 (369)
                      .
T Consensus        91 ~   91 (102)
T d1mjuh2          91 T   91 (102)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.76  E-value=0.0043  Score=53.35  Aligned_cols=60  Identities=22%  Similarity=0.154  Sum_probs=38.2

Q ss_pred             CCccEEEeecceeChh--------hccCCcccCeeeccCCcccccC----Ccccccccccccccccccceec
Q psy12695         66 VGTQVLDLSDNFLDRY--------TFRKLINLVELDLSYNQIQFVP----SHILDSILELRELKLSGNPIQK  125 (369)
Q Consensus        66 ~~~~~L~l~~n~i~~~--------~f~~l~~L~~L~Ls~N~l~~i~----~~~f~~l~~L~~L~L~~N~l~~  125 (369)
                      ..++.|+|++|+|...        ++..+++|+.|+|++|.++...    ..++...++|++|+|++|.|+.
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence            3577777777776532        3455677777777777765311    1234556677777777777665

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=94.73  E-value=0.044  Score=37.93  Aligned_cols=74  Identities=16%  Similarity=0.097  Sum_probs=41.8

Q ss_pred             CCeeeccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeeccccc-ccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEE
Q psy12695        153 PDVTAEENENVTLSCRATGSPVP--KIKWIFKEKIIANISSGL-ANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA  229 (369)
Q Consensus       153 ~~~~~~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  229 (369)
                      .......+..++|.|.+.|.-+.  .|.|+++|..+....... .......|..     .+.|.+..-.-  ...|+|.+
T Consensus        17 s~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~-----~S~L~v~~~~w--~~~ytC~V   89 (107)
T d1hxmb2          17 SIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMK-----FSWLTVPEKSL--DKEHRCIV   89 (107)
T ss_dssp             CGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEE-----EEEEEECTGGG--GSCEEEEE
T ss_pred             CHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEE-----EEEEEEecccC--CCeEEEEE
Confidence            34445677889999999885443  489999887554321111 1111112221     34566544322  22699999


Q ss_pred             EeCC
Q psy12695        230 KNGA  233 (369)
Q Consensus       230 ~n~~  233 (369)
                      ....
T Consensus        90 ~H~s   93 (107)
T d1hxmb2          90 RHEN   93 (107)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            7654

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.064  Score=34.28  Aligned_cols=55  Identities=22%  Similarity=0.505  Sum_probs=37.5

Q ss_pred             ccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      .....|.|.|..   ....|.|++++..+...                .....++-+-..-.+-.|.|.|....
T Consensus        15 ~~dg~V~L~Cn~---~~k~i~W~kdg~~i~~~----------------~~~~ktlnLG~~~~DPRG~Y~C~~~~   69 (81)
T d1sy6a1          15 QEDGSVLLTCDA---EAKNITWFKDGKMIGFL----------------TEDKKKWNLGSNAKDPRGMYQCKGSQ   69 (81)
T ss_dssp             CSSSEEEEEECS---CSSEEEEEETTEEEEEE----------------ESSCCCEEEEEGGGCCEEEEEEESSS
T ss_pred             ccCCeEEEEeCC---CCcEEEEecCCeEeecc----------------cCCcceeecCCcccCCCcceEcCCCC
Confidence            346689999953   34489999998765421                11234566666677779999997643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.51  E-value=0.0067  Score=52.05  Aligned_cols=60  Identities=22%  Similarity=0.139  Sum_probs=41.1

Q ss_pred             CCccEEEeecceeChh-------hccCCcccCeeeccCCcccc-----cCCcccccccccccccccccceec
Q psy12695         66 VGTQVLDLSDNFLDRY-------TFRKLINLVELDLSYNQIQF-----VPSHILDSILELRELKLSGNPIQK  125 (369)
Q Consensus        66 ~~~~~L~l~~n~i~~~-------~f~~l~~L~~L~Ls~N~l~~-----i~~~~f~~l~~L~~L~L~~N~l~~  125 (369)
                      ..++.|.+++|+|...       ++.....|+.|+|++|+|+.     +-...+...++|+.|+|++|.++.
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~  229 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH  229 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccc
Confidence            3577888888887632       34566778888888888764     112345666778888888887754

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.015  Score=48.41  Aligned_cols=56  Identities=29%  Similarity=0.210  Sum_probs=29.2

Q ss_pred             cCCcccCeeeccCC-cccccCCcccccccccccccccc-cceecccCCcccccCcCcc
Q psy12695         84 RKLINLVELDLSYN-QIQFVPSHILDSILELRELKLSG-NPIQKITHEAFINVPKLNL  139 (369)
Q Consensus        84 ~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~f~~l~~l~~  139 (369)
                      .++++|++|+|++| .++.-....+..+++|+.|+|++ +.|+......+.++++|..
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~  229 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT  229 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCE
Confidence            34566677777664 35433333445566666777766 3454433333444444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.46  E-value=0.0054  Score=46.79  Aligned_cols=60  Identities=10%  Similarity=0.018  Sum_probs=33.9

Q ss_pred             CccEEEeecceeChh-------hccCCcccCeeeccCCcccccC----Ccccccccccccccccccceecc
Q psy12695         67 GTQVLDLSDNFLDRY-------TFRKLINLVELDLSYNQIQFVP----SHILDSILELRELKLSGNPIQKI  126 (369)
Q Consensus        67 ~~~~L~l~~n~i~~~-------~f~~l~~L~~L~Ls~N~l~~i~----~~~f~~l~~L~~L~L~~N~l~~~  126 (369)
                      .++.|+|++|.|...       ++...+.|++|+|++|.|+.-.    ..++..-++|+.|+|++|++..+
T Consensus        45 ~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~  115 (167)
T d1pgva_          45 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL  115 (167)
T ss_dssp             CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred             ccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCc
Confidence            466777777766532       3344566777777777765411    11233345577777776665544

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.13  Score=34.07  Aligned_cols=38  Identities=18%  Similarity=0.233  Sum_probs=31.4

Q ss_pred             ceeeEEEcccCCCCCEEEEEEEEeCCceE--EEEEEEEEe
Q psy12695        208 SLSNLTIVAVTMSDSGIYTCRAKNGAGEV--FTNISLNVI  245 (369)
Q Consensus       208 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~--~~~~~l~v~  245 (369)
                      .+++|.|.++...|+|+|.-.+.+..|..  ..++.|.|.
T Consensus        61 ~nGtLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~  100 (101)
T d1hnfa1          61 KNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ  100 (101)
T ss_dssp             TTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred             cCCcEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEee
Confidence            46899999999999999999999988874  455666654

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=94.28  E-value=0.032  Score=38.00  Aligned_cols=64  Identities=16%  Similarity=0.234  Sum_probs=36.5

Q ss_pred             CCeEEEEEEeeCCCCC--eEEEEeCCeEeeecccc------cccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        160 NENVTLSCRATGSPVP--KIKWIFKEKIIANISSG------LANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       160 G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ...++|.|.+.|.-+.  .|.|++++..+......      ....+...|..     .+.|.+   ...+...|+|.+..
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~-----~s~l~v---~~~~~~~ytC~V~H   85 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQK-----HIDVYV---DGGLEHVYSCRVKG   85 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEE-----EEEEEE---CTTCGGGEEEEEEE
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEE-----EEEEEE---CCCCCCEEEEEEEe
Confidence            4578999999986555  48899987654321110      01122223332     334555   33444579999864

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.25  E-value=0.0077  Score=45.87  Aligned_cols=61  Identities=10%  Similarity=0.110  Sum_probs=45.7

Q ss_pred             CCccEEEeecc-eeChh-------hccCCcccCeeeccCCcccccCCcc----cccccccccccccccceecc
Q psy12695         66 VGTQVLDLSDN-FLDRY-------TFRKLINLVELDLSYNQIQFVPSHI----LDSILELRELKLSGNPIQKI  126 (369)
Q Consensus        66 ~~~~~L~l~~n-~i~~~-------~f~~l~~L~~L~Ls~N~l~~i~~~~----f~~l~~L~~L~L~~N~l~~~  126 (369)
                      +.++.|+|+++ .|...       ++...+.|+.|+|++|.|..-...+    +...+.|+.|+|++|.|..-
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~   87 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE   87 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchH
Confidence            56899999975 57643       5667788999999999997522222    33456799999999998763

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.19  E-value=0.048  Score=39.11  Aligned_cols=72  Identities=21%  Similarity=0.327  Sum_probs=43.2

Q ss_pred             eccCCeEEEEEEeeCCCCC--eEEEEeCCeEeeecccc-------cccCCcceEEEEeecceeeEEEcccCCCCCE-EEE
Q psy12695        157 AEENENVTLSCRATGSPVP--KIKWIFKEKIIANISSG-------LANMNKRQYIIKTINSLSNLTIVAVTMSDSG-IYT  226 (369)
Q Consensus       157 ~~~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~  226 (369)
                      ...++.++|.|.+.|.-+.  .|.|+++|..+......       ........|.+     .+.|.|..-.-.+.| .|+
T Consensus        17 ~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~-----sS~L~v~~~~W~~~g~~yt   91 (127)
T d1ogae2          17 ISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSL-----SSRLRVSATFWQNPRNHFR   91 (127)
T ss_dssp             HHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEE-----EEEEEEEHHHHTCTTCEEE
T ss_pred             hccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEE-----EEEEEECHHHhCCCCCEEE
Confidence            3457789999999885433  59999998776432110       00112223332     456777554434545 799


Q ss_pred             EEEEeCC
Q psy12695        227 CRAKNGA  233 (369)
Q Consensus       227 C~a~n~~  233 (369)
                      |.+....
T Consensus        92 C~V~H~~   98 (127)
T d1ogae2          92 CQVQFYG   98 (127)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            9997643

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=94.09  E-value=0.069  Score=35.92  Aligned_cols=67  Identities=16%  Similarity=0.266  Sum_probs=38.4

Q ss_pred             cCCeEEEEEEeeCCCCC--eEEEEeCCeEeeecccc--c-ccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        159 ENENVTLSCRATGSPVP--KIKWIFKEKIIANISSG--L-ANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       159 ~G~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      .++.++|.|.+.|.-+.  .|+|++++..+......  . ...+...|..     .+.|.+.   ..+...|+|.+....
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~-----~s~l~v~---~~~~~~ytC~V~H~~   85 (94)
T d1hyrc1          14 SEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQT-----WVATRIC---QGEEQRFTCYMEHSG   85 (94)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEE-----EEEEEEE---TTCGGGEEEEEEETT
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEE-----EEEEEEc---CCCCCEEEEEEEECC
Confidence            35678999999985433  59999998766532111  1 1111222222     2344443   334446999997654

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.014  Score=40.28  Aligned_cols=74  Identities=14%  Similarity=0.197  Sum_probs=38.7

Q ss_pred             eeeccCCeEEEEEEeeCCCCC----eEEEEeCCeEeeecccccc-cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEE
Q psy12695        155 VTAEENENVTLSCRATGSPVP----KIKWIFKEKIIANISSGLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRA  229 (369)
Q Consensus       155 ~~~~~G~~~~l~C~~~g~p~p----~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  229 (369)
                      ..+..++.++|.|.+.|..+.    .+.|++++........... ......|.+     .+.|.|..-.-.....|.|.+
T Consensus        11 ~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~-----~S~L~v~~~~w~~g~~~tC~V   85 (103)
T d1fp5a1          11 FDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTV-----TSTLPVGTRDWIEGETYQCRV   85 (103)
T ss_dssp             HHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEE-----EEEEECCHHHHHTTCCEEEEE
T ss_pred             HHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEE-----EEEEEEcHHHhCCCCeEEEEE
Confidence            335567888999999985332    4667777765432211110 011112221     334554332222244799999


Q ss_pred             EeCC
Q psy12695        230 KNGA  233 (369)
Q Consensus       230 ~n~~  233 (369)
                      ....
T Consensus        86 ~H~~   89 (103)
T d1fp5a1          86 THPH   89 (103)
T ss_dssp             ECSS
T ss_pred             EECC
Confidence            8753

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.61  E-value=0.038  Score=38.01  Aligned_cols=70  Identities=14%  Similarity=0.303  Sum_probs=38.7

Q ss_pred             ccCCeEEEEEEeeCC-CC---CeEEEEeCCeEeeecccccc-cCCcceEEEEeecceeeEEEcccCCCCCE-EEEEEEEe
Q psy12695        158 EENENVTLSCRATGS-PV---PKIKWIFKEKIIANISSGLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSG-IYTCRAKN  231 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~-p~---p~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n  231 (369)
                      ..+..++|.|.+.|. |.   ..+.|++++........... ......|..     .+.|.|..-. -+.| .|+|.+..
T Consensus        14 ~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~-----~S~L~v~~~~-W~~g~~~tC~V~H   87 (103)
T d1i1ca1          14 GGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRS-----VSELPIVERD-WLNGKTFKCKVNS   87 (103)
T ss_dssp             TSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEE-----EEEEECCHHH-HHTTCCEEEEEEC
T ss_pred             ccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEE-----EEEEEECHHH-hcCCCEEEEEEEe
Confidence            456778999999874 43   36889998876543221111 112222222     3445543322 1244 69999986


Q ss_pred             CC
Q psy12695        232 GA  233 (369)
Q Consensus       232 ~~  233 (369)
                      ..
T Consensus        88 ~~   89 (103)
T d1i1ca1          88 GA   89 (103)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=93.53  E-value=0.049  Score=38.56  Aligned_cols=71  Identities=11%  Similarity=0.193  Sum_probs=39.9

Q ss_pred             ccCCeEEEEEEeeCC-CC---CeEEEEeCCeEeeecccccc-cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeC
Q psy12695        158 EENENVTLSCRATGS-PV---PKIKWIFKEKIIANISSGLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNG  232 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~-p~---p~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  232 (369)
                      ..++.++|.|.+.|. |.   ..+.|++++........... ......|.+     .+.|.|..-.-.....|+|.+...
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~-----~S~L~v~~~eW~~g~~ytC~V~H~  104 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRV-----VSALPIQHQDWMSGKEFKCKVNNK  104 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEE-----EEEEECCHHHHHTTCEEEEEEECT
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEE-----EEEEEEeHHHhCCCCeEEEEEEEC
Confidence            457889999999884 32   36889999876643221111 111122221     344554332212334799999865


Q ss_pred             C
Q psy12695        233 A  233 (369)
Q Consensus       233 ~  233 (369)
                      .
T Consensus       105 ~  105 (119)
T d1igtb3         105 D  105 (119)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=0.0025  Score=44.21  Aligned_cols=42  Identities=17%  Similarity=0.279  Sum_probs=28.7

Q ss_pred             CCCCccCCC-CCeeeccCCeEEEEEEeeCC--CC-CeEEEEeCCeE
Q psy12695        144 CSPNIRPIT-PDVTAEENENVTLSCRATGS--PV-PKIKWIFKEKI  185 (369)
Q Consensus       144 c~p~i~~~~-~~~~~~~G~~~~l~C~~~g~--p~-p~i~W~~~~~~  185 (369)
                      |.|.+...+ ....+..++.++|.|.+.|.  |. ..|.|++++..
T Consensus         1 ~~P~V~l~~Ps~~~~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~   46 (101)
T d1ow0a1           1 CHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGK   46 (101)
T ss_dssp             CCCCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCBSSCSSC
T ss_pred             CCCEEEEECCCHHHHccCCCeEEEEEEeCCCCCcceEEEEEECCce
Confidence            566655443 33345678899999999985  33 36999987653

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.14  E-value=0.14  Score=32.99  Aligned_cols=55  Identities=22%  Similarity=0.460  Sum_probs=36.6

Q ss_pred             ccCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        158 EENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       158 ~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      .+..+|.|.|...   ...|.|++++..+.....                ...+|-+-..-..-.|.|.|....
T Consensus        20 ~~dGsV~L~Cn~~---~k~i~W~kdg~~i~~~~~----------------~~ktlnLG~~~~DPRGiY~C~g~~   74 (86)
T d1jbja1          20 RGDGSVLLTCGLT---DKTIKWLKDGSIISPLNA----------------TKNTWNLGNNAKDPRGTYQCQGAK   74 (86)
T ss_dssp             SSSCEEEEECSSS---CSCEEEEETTEECCCSSC----------------CSSCCEEEETTSCCEEEEEEEESS
T ss_pred             ccCCeEEEEeCCC---CcEEEEecCCceeccccc----------------ccceeecCCcccCCCcceEcCCCc
Confidence            3566899999553   348999999876642211                123455666666778999997543

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.08  E-value=0.063  Score=36.92  Aligned_cols=72  Identities=17%  Similarity=0.278  Sum_probs=40.6

Q ss_pred             eccCCeEEEEEEeeCC-CC---CeEEEEeCCeEeeecccccc-cCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEe
Q psy12695        157 AEENENVTLSCRATGS-PV---PKIKWIFKEKIIANISSGLA-NMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKN  231 (369)
Q Consensus       157 ~~~G~~~~l~C~~~g~-p~---p~i~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  231 (369)
                      ...++.++|.|.+.|. |.   ..+.|.+++..+........ ......|.+     .+.|.|..-.-.....|+|.+..
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~-----~S~L~v~~~~W~~g~~ytC~V~H   89 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRV-----VSVLTVLHQDWLNGKEYKCKVSN   89 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEE-----EEEEECCHHHHHTTCCEEEEEEC
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEE-----EEEEEEcHHHcCCCCEEEEEEEe
Confidence            4567889999999884 32   35778888876643221111 112222322     34555543322223379999987


Q ss_pred             CC
Q psy12695        232 GA  233 (369)
Q Consensus       232 ~~  233 (369)
                      ..
T Consensus        90 ~~   91 (105)
T d1l6xa1          90 KA   91 (105)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.99  E-value=0.17  Score=32.62  Aligned_cols=50  Identities=30%  Similarity=0.456  Sum_probs=30.4

Q ss_pred             cCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEE
Q psy12695        159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCR  228 (369)
Q Consensus       159 ~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  228 (369)
                      .|+.+.|.|...-  ...|.|.+++..-...                  .+..++|.-=...|+|.|+|.
T Consensus        20 ~~~~V~L~C~t~e--E~~I~W~kd~~se~~~------------------~GntltV~VkE~~~aGnYTCh   69 (87)
T d3d85d1          20 PGEMVVLTCDTPE--EDGITWTLDQSSEVLG------------------SGKTLTIQVKEFGDAGQYTCH   69 (87)
T ss_dssp             CCEEEEEECSSSC--CSSCEEEETTCCCCCE------------------ESSEEEEEECSGGGCEEEEEE
T ss_pred             CccEEEEecCCCc--ccccEEeeCCcccccc------------------CCCEEEEEEEeccCCcceeEe
Confidence            4678999995432  2369999987541110                  123444432234689999997

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.40  E-value=0.17  Score=31.60  Aligned_cols=51  Identities=18%  Similarity=0.376  Sum_probs=30.7

Q ss_pred             cCCeEEEEEEeeCCCCCeEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        159 ENENVTLSCRATGSPVPKIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       159 ~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      ..+.|.|.|.      ..|.|++.+..+..                  .....+-+-..-.+-.|.|.|.++...
T Consensus         8 ~e~~V~L~Cn------~si~W~k~~~~~~~------------------~~~k~lnLG~~~~DPRG~Y~C~~~e~~   58 (74)
T d1xiwb_           8 LEDRVFVNCN------TSITWVEGTVGTLL------------------SDITRLDLGKRILDPRGIYRCNGTDIY   58 (74)
T ss_dssp             ETTEEEEECS------SCEEEEEECCCEEE------------------GGGTEEEEEEGGGCCEEEEEEC-----
T ss_pred             cCCeEEEEcc------CeeEEecCCccccc------------------CCccEeecCCcccCCCcceEeCCcccc
Confidence            3458999994      46999997643321                  112345555666677899999876433

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=92.03  E-value=0.27  Score=32.19  Aligned_cols=62  Identities=13%  Similarity=0.157  Sum_probs=34.9

Q ss_pred             CeEEEEEEeeCCCCC--eEEEEeCCeEeeecccccccCCcceEEEEeecceeeEEEcccCCCCCEEEEEEEEeCC
Q psy12695        161 ENVTLSCRATGSPVP--KIKWIFKEKIIANISSGLANMNKRQYIIKTINSLSNLTIVAVTMSDSGIYTCRAKNGA  233 (369)
Q Consensus       161 ~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  233 (369)
                      +.++|.|.+.|.-+.  .|.|.++|........... .....|.        .+.+..+...|  .|+|.+....
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~-~~~gtys--------~~s~~~~~~~~--~yTC~V~H~~   77 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVI-SPSGKYN--------AVKLGKYEDSN--SVTCSVQHDN   77 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEE-CTTSSEE--------EEEEEEETTTT--TCEEEEEETT
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeee-ccCCcEE--------EEEEEecCCCC--EEEEEEEECC
Confidence            456899999986555  4789998876543221111 1111222        22233333333  6999998654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=91.66  E-value=0.023  Score=42.88  Aligned_cols=58  Identities=10%  Similarity=0.095  Sum_probs=30.2

Q ss_pred             CccEEEeec-ceeChh-------hccCCcccCeeeccCCcccccCC----ccccccccccccccccccee
Q psy12695         67 GTQVLDLSD-NFLDRY-------TFRKLINLVELDLSYNQIQFVPS----HILDSILELRELKLSGNPIQ  124 (369)
Q Consensus        67 ~~~~L~l~~-n~i~~~-------~f~~l~~L~~L~Ls~N~l~~i~~----~~f~~l~~L~~L~L~~N~l~  124 (369)
                      .++.|+|++ +.|+..       ++...+.|++|+|++|.|+.-..    .++.....|+.|++++|.+.
T Consensus        18 ~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          18 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             CCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            456666665 335432       34455666666666666543111    12333445666666666554

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=89.95  E-value=0.045  Score=38.17  Aligned_cols=26  Identities=27%  Similarity=0.512  Sum_probs=19.2

Q ss_pred             cCCeEEEEEEeeCCCCC--eEEEEeCCe
Q psy12695        159 ENENVTLSCRATGSPVP--KIKWIFKEK  184 (369)
Q Consensus       159 ~G~~~~l~C~~~g~p~p--~i~W~~~~~  184 (369)
                      .++.++|.|.+.|.-+.  .|.|.+++.
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~   53 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSSEP   53 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSCCT
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeCCC
Confidence            45678999999985433  589987653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=84.78  E-value=0.17  Score=37.72  Aligned_cols=60  Identities=17%  Similarity=0.115  Sum_probs=41.1

Q ss_pred             CCccEEEeecceeCh-------hhccCCcccCeeeccCCcccccC----Cccccccccccccc--ccccceec
Q psy12695         66 VGTQVLDLSDNFLDR-------YTFRKLINLVELDLSYNQIQFVP----SHILDSILELRELK--LSGNPIQK  125 (369)
Q Consensus        66 ~~~~~L~l~~n~i~~-------~~f~~l~~L~~L~Ls~N~l~~i~----~~~f~~l~~L~~L~--L~~N~l~~  125 (369)
                      ..++.|+|++|.|..       .++...+.|+.|++++|.+..-.    ..++...++|+.++  +++|.+..
T Consensus        46 ~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~  118 (166)
T d1io0a_          46 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN  118 (166)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             CccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcH
Confidence            368899999999774       35667788999999999986421    12344556677644  45676654