Psyllid ID: psy12707

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MVFLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYLLGRRLMIQEL
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEEEEEccccccEEEEEEcccccccccccccccEEEEcEEEEEEEEEEccEEEEEEccccccccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHccccccccccccccEEEEEEcccEEccccccccccccccccEEEEEEEEccccccEEEEEEEEcHHHHHHHc
Secondary Structure Prediction (SSPRO)
cEEEEccccccccccEEEEEEEEccccccEEEEEEcccccEccccccccccEEEEEEEEEEEEEcccEEEEEEEEEEEcccEEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccHHHcccccccccHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHcccEEEEccccccEEEEEEEcccEEEccccccccccccEEEEEEEEcccccccccEEEEEEEccHHHHHHHc
Coil and Loop (DISEMBL)
mvflcqrncslkeykskvvsckrnetrpteyhvrmedtiffptgggqhcdkgtlggVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFgydteswncgsdvcdvelatkdkdlTEADIAAIEQECNNKIRQGVKVwaseyqpgdpalktahtrglpkdhkgsirIVHIdgidnnmccgthvdnISQLQSIKLLKTTRAQKSKSLCIYLYLLGRRLMIQEL
Flexible Loop (DISEMBL)
mvflcqrncslkeykskvvsckrnetrpteyhvRMEDTIFFPTGGGQHCDKGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPalktahtrglpkdhkGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKttraqksksLCIYLYLLGRRLMIQEL
Low Complexity Region (SEG)
MVFLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYLLGRRLMIQEL
Disordered region (IsUnstruct)
**FLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQ*****************HKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYLLGRRLMI***
Disordered Region (DISOPRED)
MVFLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYLLGRRLMIQEL
Disordered Region (DISEMBL)
MVFLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYLLGRRLMIQEL
Disordered Region (DISPRO)
MVFLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYLLGRRLMIQEL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVFLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDxxxxxxxxxxxxxxxxxxxxxxxxxxxxGVKVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYLLGRRLMIQEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
Q6DEJ5	412	Alanyl-tRNA editing prote	yes	N/A	0.967	0.575	0.436	4e-56
Q3THG9	412	Alanyl-tRNA editing prote	yes	N/A	0.967	0.575	0.418	8e-53
Q5XI97	412	Alanyl-tRNA editing prote	yes	N/A	0.967	0.575	0.418	2e-52
Q9BTE6	412	Alanyl-tRNA editing prote	yes	N/A	0.967	0.575	0.402	7e-50
Q32LK1	444	Alanyl-tRNA editing prote	yes	N/A	0.967	0.533	0.402	2e-49
Q7ZYJ9	412	Alanyl-tRNA editing prote	N/A	N/A	0.959	0.570	0.408	2e-49
Q08B09	412	Alanyl-tRNA editing prote	N/A	N/A	0.959	0.570	0.408	3e-49
P53960	456	Putative alanyl-tRNA edit	yes	N/A	0.967	0.519	0.329	3e-30
A8A8X8	901	Alanine--tRNA ligase OS=I	yes	N/A	0.812	0.220	0.293	3e-22
O57734	404	Alanyl-tRNA editing prote	yes	N/A	0.906	0.549	0.314	7e-20

>sp|Q6DEJ5|AASD1_DANRE Alanyl-tRNA editing protein Aarsd1 OS=Danio rerio GN=aarsd1 PE=2 SV=1

 Score =  218 bits (554), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 109/250 (43%), Positives = 155/250 (62%), Gaps = 13/250 (5%)

Query: 1   MVFLCQRNCSLKEYKSKVVSCKRNETRP---------TEYHVRMEDTIFFPTGGGQHCDK 51
           M F CQR+C ++E+ S VVSC   E +          T ++V+++DTI FP GGGQ  D 
Sbjct: 1   MAFQCQRDCYMQEFDSCVVSCVPAELKLENNGRKEKLTGFNVKLKDTILFPEGGGQPDDH 60

Query: 52  GTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDK 111
           GT+GGV V+ V R G +AVH V+   + G+ + +K+DW  R D  QQH+GQHL++A+ D 
Sbjct: 61  GTIGGVPVLRVLRQGPDAVHFVSSALEEGQEVHIKLDWERRFDHMQQHSGQHLITALADT 120

Query: 112 MFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPA 171
           MFGY T SW+ G     +EL T    +   ++ A+E   N KIR  V V  +     DPA
Sbjct: 121 MFGYKTTSWDLGRQRSSIELDT--ATVKPGEMEALETAVNEKIRAHVPVTVNLLSIDDPA 178

Query: 172 LKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCI 231
           ++   +RGLP DH G IRI+ I+G+D NMCCGTHV N+S LQ IK+L T + +K+K+  I
Sbjct: 179 VEKVRSRGLPDDHAGPIRIIDIEGVDANMCCGTHVSNLSHLQVIKILGTEKGKKNKTNLI 238

Query: 232 YLYLLGRRLM 241
           ++   G R++
Sbjct: 239 FIA--GNRVL 246

Functions in trans to edit the amino acid moiety from incorrectly charged tRNA(Ala).
Danio rerio (taxid: 7955)

>sp|Q3THG9|AASD1_MOUSE Alanyl-tRNA editing protein Aarsd1 OS=Mus musculus GN=Aarsd1 PE=1 SV=2

 Score =  207 bits (526), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 105/251 (41%), Positives = 146/251 (58%), Gaps = 14/251 (5%)

Query: 1   MVFLCQRNCSLKEYKSKVVSCKRNETRP----------TEYHVRMEDTIFFPTGGGQHCD 50
           M FLCQR+   +E+ + VVSC   E +           + +HV +EDT+ FP GGGQ  D
Sbjct: 1   MAFLCQRDSYAREFTTTVVSCSPAELQTDASGGKKEVLSGFHVVLEDTLLFPEGGGQPDD 60

Query: 51  KGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVID 110
           +GT+  + V+ V R G +A H        G  + +++DW  R D  QQH+GQHL++AV D
Sbjct: 61  RGTINDISVLRVTRRGAQADHFTESPLSPGSQVQVRVDWERRFDHMQQHSGQHLITAVAD 120

Query: 111 KMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDP 170
            +FG  T SW  G     +EL +    +T   +AAIEQ  N KIR  + V   E    DP
Sbjct: 121 LLFGLKTTSWELGRLRSVIELDSPS--VTAEQVAAIEQSVNQKIRDRLPVSVRELSLDDP 178

Query: 171 ALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLC 230
            ++    RGLP DH G IR+V I+G+D+NMCCGTHV N+S LQ IK+L T + +K+KS  
Sbjct: 179 EVEQVRGRGLPDDHAGPIRVVTIEGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNKSNL 238

Query: 231 IYLYLLGRRLM 241
           I+L   G R++
Sbjct: 239 IFLA--GNRVL 247

Functions in trans to edit the amino acid moiety from incorrectly charged Ser-tRNA(Ala).

Mus musculus (taxid: 10090)

>sp|Q5XI97|AASD1_RAT Alanyl-tRNA editing protein Aarsd1 OS=Rattus norvegicus GN=Aarsd1 PE=2 SV=1

 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/251 (41%), Positives = 147/251 (58%), Gaps = 14/251 (5%)

Query: 1   MVFLCQRNCSLKEYKSKVVSCKRNETRP----------TEYHVRMEDTIFFPTGGGQHCD 50
           M FLCQR+   +E+ + VVSC   E +           + + V +EDT+ FP GGGQ  D
Sbjct: 1   MAFLCQRDSYAREFTTTVVSCCPAELQTDGNGSKKEVLSGFQVVLEDTLLFPEGGGQPDD 60

Query: 51  KGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVID 110
           +GT+  + V+ V R G +A H        G  + +++DW  R D  QQH+GQHL++AV D
Sbjct: 61  RGTINDISVLRVTRRGAQADHFTQTPLSPGSQVQVRVDWERRFDHMQQHSGQHLITAVAD 120

Query: 111 KMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDP 170
            +FG  T SW  G   C +EL +    +T   +AAIEQ  N KIR  + V   E    DP
Sbjct: 121 LLFGLKTTSWELGKLRCVIELDSPS--VTAEQVAAIEQSVNQKIRDRLPVSVRELSLDDP 178

Query: 171 ALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLC 230
            ++    RGLP DH G IR+V I+G+D+NMCCGTHV+N+S LQ IK+L T + +K+KS  
Sbjct: 179 EVEQVRGRGLPDDHAGPIRVVTIEGVDSNMCCGTHVNNLSDLQVIKILGTEKGKKNKSNL 238

Query: 231 IYLYLLGRRLM 241
           I+L   G R++
Sbjct: 239 IFLA--GNRVL 247

Functions in trans to edit the amino acid moiety from incorrectly charged tRNA(Ala).

Rattus norvegicus (taxid: 10116)

>sp|Q9BTE6|AASD1_HUMAN Alanyl-tRNA editing protein Aarsd1 OS=Homo sapiens GN=AARSD1 PE=1 SV=2

 Score =  197 bits (500), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 101/251 (40%), Positives = 145/251 (57%), Gaps = 14/251 (5%)

Query: 1   MVFLCQRNCSLKEYKSKVVSCKRNETRP----------TEYHVRMEDTIFFPTGGGQHCD 50
           M F CQR+   +E+ + VVSC   E +           + + V +EDT+ FP GGGQ  D
Sbjct: 1   MAFWCQRDSYAREFTTTVVSCCPAELQTEGSNGKKEVLSGFQVVLEDTVLFPEGGGQPDD 60

Query: 51  KGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVID 110
           +GT+  + V+ V R G++A H        G  + +++DW  R D  QQH+GQHL++AV D
Sbjct: 61  RGTINDISVLRVTRRGEQADHFTQTPLDPGSQVLVRVDWERRFDHMQQHSGQHLITAVAD 120

Query: 111 KMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDP 170
            +F   T SW  G     +EL T    +T   +AAIEQ  N KIR  + V   E    DP
Sbjct: 121 HLFKLKTTSWELGRFRSAIELDTPS--MTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDP 178

Query: 171 ALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLC 230
            ++    RGLP DH G IR+V+I+G+D+NMCCGTHV N+S LQ IK+L T + +K+++  
Sbjct: 179 EVEQVSGRGLPDDHAGPIRVVNIEGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNRTNL 238

Query: 231 IYLYLLGRRLM 241
           I+L   G R++
Sbjct: 239 IFLS--GNRVL 247

Functions in trans to edit the amino acid moiety from incorrectly charged tRNA(Ala).

Homo sapiens (taxid: 9606)

>sp|Q32LK1|AASD1_BOVIN Alanyl-tRNA editing protein Aarsd1 OS=Bos taurus GN=AARSD1 PE=2 SV=1

 Score =  196 bits (497), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 101/251 (40%), Positives = 143/251 (56%), Gaps = 14/251 (5%)

Query: 1   MVFLCQRNCSLKEYKSKVVSCKRNETRPTE----------YHVRMEDTIFFPTGGGQHCD 50
           M F CQR+   +E+ + VVSC+  E    E          + V +EDT+ FP GGGQ  D
Sbjct: 1   MAFRCQRDSYAREFTTTVVSCRPAELHTEESNGKKEVLSGFQVVLEDTLLFPEGGGQPDD 60

Query: 51  KGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVID 110
           +GT+  + V+ V R G +A H        G  + +++DW  R D  QQH+GQHL++AV D
Sbjct: 61  RGTINDISVLRVTRRGTQADHFTQTPLTPGTEVQVRVDWERRFDHMQQHSGQHLITAVAD 120

Query: 111 KMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDP 170
            +FG  T SW  G     +EL +    +T   +AAIE+  N KIR  + V   E    DP
Sbjct: 121 DLFGLKTTSWELGRLRSVIELDSPT--VTAEQVAAIERSVNEKIRDRLPVNVRELSLDDP 178

Query: 171 ALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLC 230
            ++    RGLP DH G IR+V I+ +D+NMCCGTHV N+S LQ IK+L T + +K+K+  
Sbjct: 179 EVEQVRGRGLPDDHAGPIRVVTIESVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNKTNL 238

Query: 231 IYLYLLGRRLM 241
           I+L   G R++
Sbjct: 239 IFLA--GNRVL 247

Functions in trans to edit the amino acid moiety from incorrectly charged tRNA(Ala).

Bos taurus (taxid: 9913)

>sp|Q7ZYJ9|AASDB_XENLA Alanyl-tRNA editing protein Aarsd1-B OS=Xenopus laevis GN=aarsd1-b PE=2 SV=1

 Score =  195 bits (496), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 103/252 (40%), Positives = 146/252 (57%), Gaps = 17/252 (6%)

Query: 1   MVFLCQRNCSLKEYKSKVVSC-----------KRNETRPTEYHVRMEDTIFFPTGGGQHC 49
           M F CQR+C   E  ++VVSC           K+N    + ++V ++DT+ FP GGGQ  
Sbjct: 1   MAFHCQRDCYATELLTEVVSCHPAQLKLENGGKKNTV--SGFNVLLKDTVLFPEGGGQPD 58

Query: 50  DKGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVI 109
           D+G +G V V+ V R G +AVH V         + +KIDW  R D  QQH+GQHL++A+ 
Sbjct: 59  DRGFIGEVPVLRVIRQGPDAVHFVASPLDPATEVLVKIDWNRRFDHMQQHSGQHLVTAIA 118

Query: 110 DKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGD 169
           D ++G+ T SW+ G     +EL T    +T   + AIE+  N KIR+ V V        D
Sbjct: 119 DSLYGFKTTSWDLGRQRSVIELDT--PLVTAEQVEAIEKVANQKIREHVPVHVRLITVDD 176

Query: 170 PALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSL 229
           P      +RGLP DH G +RI+ I+G+D NMCCGTHV N+S LQ IK+L T + +K+K+ 
Sbjct: 177 PEFDMVRSRGLPDDHAGPVRIIDIEGVDANMCCGTHVRNLSDLQMIKILGTEKGKKNKTN 236

Query: 230 CIYLYLLGRRLM 241
            I+L   G R++
Sbjct: 237 LIFLS--GERVL 246

Functions in trans to edit the amino acid moiety from incorrectly charged tRNA(Ala).

Xenopus laevis (taxid: 8355)

>sp|Q08B09|AASDA_XENLA Alanyl-tRNA editing protein Aarsd1-A OS=Xenopus laevis GN=aarsd1-a PE=2 SV=1

 Score =  194 bits (494), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 103/252 (40%), Positives = 146/252 (57%), Gaps = 17/252 (6%)

Query: 1   MVFLCQRNCSLKEYKSKVVSC-----------KRNETRPTEYHVRMEDTIFFPTGGGQHC 49
           M F CQR+C   E  ++VVSC           K+N    + ++V ++DT+ FP GGGQ  
Sbjct: 1   MAFHCQRDCYATELLTEVVSCHPAQLKLENGGKKNTV--SGFNVLLKDTVLFPEGGGQPD 58

Query: 50  DKGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVI 109
           D+G +G V V+ V R G +AVH V         + +KIDW  R D  QQH+GQHL++A+ 
Sbjct: 59  DRGFIGEVPVLRVIRQGPDAVHFVASPLDPATEVLVKIDWNRRFDHMQQHSGQHLVTAIA 118

Query: 110 DKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGD 169
           D ++G+ T SW+ G     +EL T    +T   + AIE+  N KIR+ V V        D
Sbjct: 119 DSLYGFKTTSWDLGRQRSVIELDT--PLVTTEQLEAIEKIANQKIREHVPVHVRLITVDD 176

Query: 170 PALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSL 229
           P      +RGLP DH G +RI+ I+G+D NMCCGTHV N+S LQ IK+L T + +K+K+ 
Sbjct: 177 PEFDMVRSRGLPDDHAGPVRIIDIEGVDANMCCGTHVRNLSDLQMIKILGTEKGKKNKTN 236

Query: 230 CIYLYLLGRRLM 241
            I+L   G R++
Sbjct: 237 LIFLS--GERVL 246

Functions in trans to edit the amino acid moiety from incorrectly charged tRNA(Ala).

Xenopus laevis (taxid: 8355)

>sp|P53960|YNE0_YEAST Putative alanyl-tRNA editing protein alaX OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL040W PE=1 SV=1

 Score =  132 bits (331), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/267 (32%), Positives = 134/267 (50%), Gaps = 30/267 (11%)

Query: 5   CQRNCSLKE-YKSKVVSCKRNETRPTE---YHVRMEDTIFFPTGGGQHCDKGTLGGVE-- 58
           CQRN  L + +K+ VVSC+  + +  E   Y + ++DTI FP GGGQ  D G L  VE  
Sbjct: 15  CQRNSFLFDGFKTLVVSCEPTKNKKGEIEGYEIELQDTILFPEGGGQPSDSGFLKIVEGN 74

Query: 59  ----------VVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAV 108
                     V  V R G  A H VN   + G  +++ +D   R+D  QQHTGQHLLSA+
Sbjct: 75  RNSSKIEKILVSHVSRFGLHAKHHVNDYIEPGTTVEVAVDEQKRMDYMQQHTGQHLLSAI 134

Query: 109 IDKMFGYDTESWNCGSDVCDVELATKDKD----------LTEADIAAIEQECNNKIRQGV 158
           +++ +  DT SW+ G  +   +   +  D          LT  +I  +  E N  I    
Sbjct: 135 LERNYKVDTVSWSMGGIITKKKPVLEPSDYFNYIELNRKLTLDEITNVSDEINQLIINFP 194

Query: 159 KVWASEYQPGDPALKTAHTRGLPKDH---KGSIRIVHIDGIDNNMCCGTHVDNISQLQSI 215
           +    E + G+  +    T  +P D+   KG +R +HI  ID+N CCGTH+   SQ+ SI
Sbjct: 195 QEIIVEERIGEETVDEVSTSKIPDDYDLSKGVLRTIHIGDIDSNPCCGTHLKCTSQIGSI 254

Query: 216 KLLKTTRAQKSKSLCIYLYLLGRRLMI 242
            +L    A +  +  +Y ++ G+R+ +
Sbjct: 255 LILSNQSAVRGSNSRLY-FMCGKRVSL 280

May function in trans to edit the amino acid moiety from incorrectly charged tRNA(Ala).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A8A8X8|SYA_IGNH4 Alanine--tRNA ligase OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=alaS PE=3 SV=1

 Score =  105 bits (262), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 43/242 (17%)

Query: 4   LCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGG----VEV 59
           L   +  +KE+ ++V+   RN       +V ++ T F+P GGGQ  D G +        V
Sbjct: 508 LFHEDPYMKEFDAQVIGSNRN-------YVILDKTAFYPEGGGQAADTGVIASGDESYRV 560

Query: 60  VDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTES 119
           VDV + GD  VHV+++++  G+++  +IDW  R    + HTG HLL   + K+ G     
Sbjct: 561 VDVQKVGDVIVHVLDRDYSGGKVVVGRIDWERRYRLMRHHTGTHLLLGALRKVLG--DHV 618

Query: 120 WNCGSDVCDVELA---TKDKDLTEADIAAIEQECNNKIRQGVKV--------------WA 162
           W  G++    +     T  K LT  ++  IE+  N  I +  K+              W 
Sbjct: 619 WQAGAEKTPEKARFDFTHHKPLTREEVRKIEEVANKVIDERRKIRAFTLPRNEAEARYWF 678

Query: 163 SEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTR 222
           S YQ G P  K              IR+V I+G D   C GTH+ N  ++ S+K++ T +
Sbjct: 679 SIYQGGVPMSK-------------DIRLVEIEGWDVEACFGTHLSNTGEVGSLKIISTRK 725

Query: 223 AQ 224
            Q
Sbjct: 726 IQ 727

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.

Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) (taxid: 453591)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|O57734|ALAXL_PYRHO Alanyl-tRNA editing protein AlaX-L OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=alaXL PE=3 SV=1

 Score = 97.4 bits (241), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 117/242 (48%), Gaps = 20/242 (8%)

Query: 7   RNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGG----VEVVDV 62
           ++  L+E  +K+V  ++ + R     V ++ TIF+P GGGQ  D+G + G    + V D 
Sbjct: 8   KDPYLREIDAKIVDVRKEKDR---VEVVLDRTIFYPEGGGQPGDRGVIKGNDFEIMVEDT 64

Query: 63  YRDGDEAVHVVNKEFQV---GELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTES 119
                E  H+     ++   GE + + +DW  R    Q HTGQH+LSAV+ K++  DT  
Sbjct: 65  IEKNGEIFHIGKLRGEIPKEGEKVKLYLDWEWRYGNMQMHTGQHILSAVLKKLYDLDTTG 124

Query: 120 WNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQ--PGDPALKTAHT 177
           +N   D   +E+   + ++    I   E E N  I   + V   EY   P + ALK    
Sbjct: 125 FNIFRDYAKIEV---NGEVNWDMIERAELEVNKIIINDLPVVIEEYDKLPEEIALK---L 178

Query: 178 RGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYLLG 237
           R      K  IRIV I  +D   C GTHV +  ++  IK+L+  +  KSK+L    +  G
Sbjct: 179 RKNVTKVKEKIRIVKIGDVDVTPCGGTHVKSTREVGIIKVLRFYK--KSKNLWRIEFTCG 236

Query: 238 RR 239
            R
Sbjct: 237 YR 238

Functions in trans to edit the amino acid moiety from mischarged charged tRNA(Ala).

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
157124803	399	alanyl-tRNA synthetase [Aedes aegypti] g	0.955	0.586	0.479	3e-55
213515028	408	Alanyl-tRNA synthetase domain-containing	0.967	0.580	0.44	1e-54
57525832	412	alanyl-tRNA editing protein Aarsd1 [Dani	0.967	0.575	0.436	2e-54
198438284	409	PREDICTED: similar to Alanyl-tRNA synthe	0.963	0.577	0.448	3e-54
156406576	386	predicted protein [Nematostella vectensi	0.967	0.613	0.463	3e-53
260835389	407	hypothetical protein BRAFLDRAFT_127497 [	0.967	0.582	0.408	7e-52
332375887	409	unknown [Dendroctonus ponderosae]	0.971	0.581	0.418	1e-51
74200281	412	unnamed protein product [Mus musculus]	0.967	0.575	0.418	3e-51
74212129	412	unnamed protein product [Mus musculus]	0.967	0.575	0.418	4e-51
21450213	412	alanyl-tRNA editing protein Aarsd1 [Mus	0.967	0.575	0.418	4e-51

>gi|157124803|ref|XP_001660531.1| alanyl-tRNA synthetase [Aedes aegypti] gi|108873862|gb|EAT38087.1| AAEL009984-PA [Aedes aegypti]

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 118/246 (47%), Positives = 156/246 (63%), Gaps = 12/246 (4%)

Query: 1   MVFLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVV 60
           MVF CQ +  LKEY +KVV+C++       + V  EDT+ FP GGGQ  D G L G EV 
Sbjct: 1   MVFKCQEDSFLKEYIAKVVACEK--VVSGGFQVTFEDTVLFPEGGGQPSDHGWLNGTEVR 58

Query: 61  DVYRDGDEAVHVVNKE---FQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDT 117
           +V R G  AVH ++ E   FQVGE +  KIDW  R D  QQH+GQHL++A+ D+ FGY T
Sbjct: 59  NVIRKGATAVHFLDGEEVPFQVGEEVHQKIDWDRRFDHMQQHSGQHLITAIFDREFGYST 118

Query: 118 ESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKT--A 175
           +SW  GS+   V+L T  KD+T+  +  +E  CN  I     V    YQP DPALK+   
Sbjct: 119 KSWWLGSEDSFVDLDT--KDVTKEQLVKVETICNQLIVDCTPVDVKVYQPDDPALKSEAT 176

Query: 176 HTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYL 235
            TRGLP+D  G +R+V IDGI++NMCCGTHV N++QLQ+IK L     +KSK  C+  +L
Sbjct: 177 RTRGLPEDVSGPLRVVTIDGIESNMCCGTHVKNLAQLQAIKFL---NVEKSKGKCLVHFL 233

Query: 236 LGRRLM 241
           +G R++
Sbjct: 234 VGNRVL 239

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|213515028|ref|NP_001133686.1| Alanyl-tRNA synthetase domain-containing protein 1 [Salmo salar] gi|209154936|gb|ACI33700.1| Alanyl-tRNA synthetase domain-containing protein 1 [Salmo salar]

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/250 (44%), Positives = 151/250 (60%), Gaps = 13/250 (5%)

Query: 1   MVFLCQRNCSLKEYKSKVVSCKRNETRP---------TEYHVRMEDTIFFPTGGGQHCDK 51
           M F CQR+C ++E+ + VV+C   E +            ++VR++DTI FP GGGQ  D 
Sbjct: 1   MAFQCQRDCYMQEFVTSVVACSPGEMKQEINGKKETVKGFNVRLQDTILFPEGGGQPDDH 60

Query: 52  GTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDK 111
           G +G V V+ V R G EAVH V+   +VG+ + +K+DW  R D  QQH+GQHL++A+ + 
Sbjct: 61  GLIGDVPVLRVTRQGAEAVHFVSSALEVGQEVQLKLDWERRFDHMQQHSGQHLVTAIAES 120

Query: 112 MFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPA 171
           MFGY T SW  G     +EL T    +  A + A+E   N KIR  V V        DPA
Sbjct: 121 MFGYKTTSWELGRQRSTIELDT--PSMKPAQMEALEAAVNEKIRAHVPVAVQVLSLDDPA 178

Query: 172 LKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCI 231
           L+   +RGLP D  G IRI+ I+GID NMCCGTHV N+S LQ IKLL T + +K+K+   
Sbjct: 179 LEKVRSRGLPDDAAGPIRIIDIEGIDVNMCCGTHVSNLSHLQVIKLLGTEKGKKNKT--N 236

Query: 232 YLYLLGRRLM 241
            L+L+G R++
Sbjct: 237 LLFLVGNRVL 246

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|57525832|ref|NP_001003572.1| alanyl-tRNA editing protein Aarsd1 [Danio rerio] gi|82182671|sp|Q6DEJ5.1|AASD1_DANRE RecName: Full=Alanyl-tRNA editing protein Aarsd1; AltName: Full=Alanyl-tRNA synthetase domain-containing protein 1 gi|50417382|gb|AAH77118.1| Alanyl-tRNA synthetase domain containing 1 [Danio rerio]

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 109/250 (43%), Positives = 155/250 (62%), Gaps = 13/250 (5%)

Query: 1   MVFLCQRNCSLKEYKSKVVSCKRNETRP---------TEYHVRMEDTIFFPTGGGQHCDK 51
           M F CQR+C ++E+ S VVSC   E +          T ++V+++DTI FP GGGQ  D 
Sbjct: 1   MAFQCQRDCYMQEFDSCVVSCVPAELKLENNGRKEKLTGFNVKLKDTILFPEGGGQPDDH 60

Query: 52  GTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDK 111
           GT+GGV V+ V R G +AVH V+   + G+ + +K+DW  R D  QQH+GQHL++A+ D 
Sbjct: 61  GTIGGVPVLRVLRQGPDAVHFVSSALEEGQEVHIKLDWERRFDHMQQHSGQHLITALADT 120

Query: 112 MFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPA 171
           MFGY T SW+ G     +EL T    +   ++ A+E   N KIR  V V  +     DPA
Sbjct: 121 MFGYKTTSWDLGRQRSSIELDT--ATVKPGEMEALETAVNEKIRAHVPVTVNLLSIDDPA 178

Query: 172 LKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCI 231
           ++   +RGLP DH G IRI+ I+G+D NMCCGTHV N+S LQ IK+L T + +K+K+  I
Sbjct: 179 VEKVRSRGLPDDHAGPIRIIDIEGVDANMCCGTHVSNLSHLQVIKILGTEKGKKNKTNLI 238

Query: 232 YLYLLGRRLM 241
           ++   G R++
Sbjct: 239 FIA--GNRVL 246

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|198438284|ref|XP_002131660.1| PREDICTED: similar to Alanyl-tRNA synthetase domain-containing protein 1 [Ciona intestinalis]

 Score =  217 bits (553), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 113/252 (44%), Positives = 150/252 (59%), Gaps = 16/252 (6%)

Query: 1   MVFLCQRNCSLKEYKSKVVSCKRNE----------TRPTEYHVRMEDTIFFPTGGGQHCD 50
           MVF CQ +  LK+Y+SKVV+C + E           +   Y V +EDTI FP GGGQ  D
Sbjct: 1   MVFKCQADSYLKQYESKVVACTKVECKVENEIGKLVKTKGYEVELEDTILFPEGGGQPDD 60

Query: 51  KGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVID 110
           +GT+  V V  V R G +A+H V  E  VG+ + M++DW  R D  QQH+GQHL++A+ D
Sbjct: 61  RGTINDVPVKRVTRKGSKALHFVTSELSVGDTVSMEVDWKRRFDHMQQHSGQHLITAIAD 120

Query: 111 KMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDP 170
            MFG+ T SW+ G  +  +EL T    +T   +  IE   N  IR+GV V     Q G P
Sbjct: 121 TMFGFKTTSWDLGKSISFIELDT--PAVTADQLFQIECCANKSIREGVDVIVHVTQVGSP 178

Query: 171 ALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKS-L 229
            L++   RGLP DH G +RIV + GID NMCCGTHV N+S LQ IKLL   + +K K+ L
Sbjct: 179 ILQSVRARGLPDDHVGDVRIVEMKGIDTNMCCGTHVSNLSHLQCIKLLSAEKGKKGKTNL 238

Query: 230 CIYLYLLGRRLM 241
           C   +L G R++
Sbjct: 239 C---FLTGDRIL 247

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156406576|ref|XP_001641121.1| predicted protein [Nematostella vectensis] gi|156228258|gb|EDO49058.1| predicted protein [Nematostella vectensis]

 Score =  214 bits (545), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 113/244 (46%), Positives = 148/244 (60%), Gaps = 7/244 (2%)

Query: 1   MVFLCQRNCSLKEYKSKVVSCK--RNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVE 58
           MVF CQ++  LKE+K++VVSCK  +   +   + V +EDTI FP GGGQ  DKG + G+E
Sbjct: 1   MVFACQKDSFLKEFKTEVVSCKPAKQNKKDDVFEVVLEDTILFPEGGGQPDDKGMINGIE 60

Query: 59  VVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTE 118
           V+ V+R G +AVHV+++    G    + +DW  R D  QQH+GQHLLSA+I+  FGY T 
Sbjct: 61  VLQVFRRGRQAVHVLSQHIDEGAQASLVLDWERRFDHMQQHSGQHLLSALIENKFGYKTT 120

Query: 119 SWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQ-PGDPALKTAHT 177
           SW  G     +EL    K LT  +IA IE   N  IR  V V    Y    DP L+ A T
Sbjct: 121 SWELGRVRSHIELHC--KCLTPDEIACIESSANAAIRGHVPVCVHVYPDKTDPELEEAQT 178

Query: 178 RGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYLLG 237
           RGLP DH G IR++ I GID NMCCGTHVDN+SQ+Q++KL     + +    C   +L G
Sbjct: 179 RGLPDDHIGPIRVIEIKGIDKNMCCGTHVDNLSQVQAVKLFPDVDSMRGG--CRLFFLCG 236

Query: 238 RRLM 241
            R+ 
Sbjct: 237 DRVF 240

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|260835389|ref|XP_002612691.1| hypothetical protein BRAFLDRAFT_127497 [Branchiostoma floridae] gi|229298070|gb|EEN68700.1| hypothetical protein BRAFLDRAFT_127497 [Branchiostoma floridae]

 Score =  209 bits (533), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 101/247 (40%), Positives = 150/247 (60%), Gaps = 10/247 (4%)

Query: 1   MVFLCQRNCSLKEYKSKVVSCKRNE------TRPTEYHVRMEDTIFFPTGGGQHCDKGTL 54
           M   CQ+N  L E+ SKVVSC   +       +   Y V +EDTI FP GGGQ  D+G +
Sbjct: 1   MALQCQQNSYLTEFSSKVVSCNPGQLVISKKKKQPGYEVILEDTILFPEGGGQPDDRGKI 60

Query: 55  GGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFG 114
             V+V+ V R  ++AVH V    +VG  + M++DW  R D  QQH+GQHL++A+ +  FG
Sbjct: 61  NDVDVIRVTRKQNQAVHFVETPLEVGSEVKMEVDWTRRFDHMQQHSGQHLITAIAEAKFG 120

Query: 115 YDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKT 174
           Y T SW+ GS V  +E+ T    +T   ++ +E+E N  IR+ + +     +PG P L+ 
Sbjct: 121 YKTTSWDLGSKVSSIEMDT--PTITLEQLSELEREVNECIRRQIPMTPRLLEPGSPELEQ 178

Query: 175 AHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLY 234
             +RGLP DH G +R+V I+GID+N CCGTHV N++ LQ+IKLL   + +K K+    ++
Sbjct: 179 VRSRGLPDDHIGPVRVVEIEGIDHNTCCGTHVSNLAHLQAIKLLSLEKGKKGKTNV--MF 236

Query: 235 LLGRRLM 241
           + G R++
Sbjct: 237 VAGNRVL 243

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332375887|gb|AEE63084.1| unknown [Dendroctonus ponderosae]

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 105/251 (41%), Positives = 151/251 (60%), Gaps = 13/251 (5%)

Query: 1   MVFLCQRNCSLKEYKSKVVSC--------KRNETRPTEYHVRMEDTIFFPTGGGQHCDKG 52
           MVF CQ +  LKE+ +KV+SC        K++      Y V +EDTI FP GGGQ CD G
Sbjct: 1   MVFKCQSDSFLKEFSAKVISCDKAVGADNKKDANVKELYEVILEDTILFPEGGGQPCDYG 60

Query: 53  TLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKM 112
            L  + V  V R GD+A+H++++   +   +   I+W  R D  QQH+GQHL++A+ID+ 
Sbjct: 61  FLNAIPVNKVVRKGDKAIHIIHEPLPIVSEVKQTINWDRRFDHMQQHSGQHLITALIDRE 120

Query: 113 FGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPA- 171
           F Y T SW  G DV  +EL      +TEA I   E + N  IR+G KV    Y    P  
Sbjct: 121 FKYPTLSWWLGEDVSYIELDI--PKITEAQIKEAENKINALIREGKKVTVEVYSEDTPKE 178

Query: 172 -LKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLC 230
            L+    RGLP DHKG IR+++I+ ++ NMCCGTHV N+SQLQ++KLL + ++++     
Sbjct: 179 ELEKVRARGLPDDHKGDIRVINIEDLERNMCCGTHVTNLSQLQAVKLLNSEKSKRKDKTL 238

Query: 231 IYLYLLGRRLM 241
           +Y +L+G R++
Sbjct: 239 LY-FLVGNRVL 248

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|74200281|dbj|BAE22937.1| unnamed protein product [Mus musculus]

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 105/251 (41%), Positives = 146/251 (58%), Gaps = 14/251 (5%)

Query: 1   MVFLCQRNCSLKEYKSKVVSCKRNETRP----------TEYHVRMEDTIFFPTGGGQHCD 50
           M FLCQR+   +E+ + VVSC   E +           + +HV +EDT+ FP GGGQ  D
Sbjct: 1   MAFLCQRDSYAREFTTTVVSCSPAELQTDASGGKKEVLSGFHVVLEDTLLFPEGGGQPDD 60

Query: 51  KGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVID 110
           +GT+  + V+ V R G +A H        G  + +++DW  R D  QQH+GQHL++AV D
Sbjct: 61  RGTINDISVLRVTRRGAQAGHFTESPLSPGSQVQVRVDWERRFDHMQQHSGQHLITAVAD 120

Query: 111 KMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDP 170
            +FG  T SW  G     +EL +    +T   +AAIEQ  N KIR  + V   E    DP
Sbjct: 121 LLFGLKTTSWELGRLRSVIELDSPS--VTAEQVAAIEQSVNQKIRDRLPVSVRELSLDDP 178

Query: 171 ALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLC 230
            ++    RGLP DH G IR+V I+G+D+NMCCGTHV N+S LQ IK+L T + +K+KS  
Sbjct: 179 EVEQVRGRGLPDDHAGPIRVVTIEGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNKSNL 238

Query: 231 IYLYLLGRRLM 241
           I+L   G R++
Sbjct: 239 IFLA--GNRVL 247

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|74212129|dbj|BAE40227.1| unnamed protein product [Mus musculus]

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 105/251 (41%), Positives = 146/251 (58%), Gaps = 14/251 (5%)

Query: 1   MVFLCQRNCSLKEYKSKVVSCKRNETRP----------TEYHVRMEDTIFFPTGGGQHCD 50
           M FLCQR+   +E+ + VVSC   E +           + +HV +EDT+ FP GGGQ  D
Sbjct: 1   MAFLCQRDSYAREFTTTVVSCSPAELQTDASGGKKEVLSGFHVVLEDTLLFPEGGGQPDD 60

Query: 51  KGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVID 110
           +GT+  + V+ V R G +A H        G  + +++DW  R D  QQH+GQHL++AV D
Sbjct: 61  RGTINDISVLRVTRRGAQADHFTESPLSPGSQVQVRVDWERRFDHMQQHSGQHLITAVAD 120

Query: 111 KMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDP 170
            +FG  T SW  G     +EL +    +T   +AAIEQ  N KIR  + V   E    DP
Sbjct: 121 LLFGLKTTSWELGRLRSVIELDSPS--VTAEQVAAIEQSVNQKIRDRLPVSVRELSMDDP 178

Query: 171 ALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLC 230
            ++    RGLP DH G IR+V I+G+D+NMCCGTHV N+S LQ IK+L T + +K+KS  
Sbjct: 179 EVEQVRGRGLPDDHAGPIRVVTIEGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNKSNL 238

Query: 231 IYLYLLGRRLM 241
           I+L   G R++
Sbjct: 239 IFLA--GNRVL 247

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|21450213|ref|NP_659078.1| alanyl-tRNA editing protein Aarsd1 [Mus musculus] gi|125987703|sp|Q3THG9.2|AASD1_MOUSE RecName: Full=Alanyl-tRNA editing protein Aarsd1; AltName: Full=Alanyl-tRNA deacylase alaX; Short=AlaX; Short=AlaXp-II; AltName: Full=Alanyl-tRNA synthetase domain-containing protein 1 gi|13543069|gb|AAH05711.1| Alanyl-tRNA synthetase domain containing 1 [Mus musculus] gi|148702091|gb|EDL34038.1| alanyl-tRNA synthetase domain containing 1 [Mus musculus]

 Score =  207 bits (526), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 105/251 (41%), Positives = 146/251 (58%), Gaps = 14/251 (5%)

Query: 1   MVFLCQRNCSLKEYKSKVVSCKRNETRP----------TEYHVRMEDTIFFPTGGGQHCD 50
           M FLCQR+   +E+ + VVSC   E +           + +HV +EDT+ FP GGGQ  D
Sbjct: 1   MAFLCQRDSYAREFTTTVVSCSPAELQTDASGGKKEVLSGFHVVLEDTLLFPEGGGQPDD 60

Query: 51  KGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVID 110
           +GT+  + V+ V R G +A H        G  + +++DW  R D  QQH+GQHL++AV D
Sbjct: 61  RGTINDISVLRVTRRGAQADHFTESPLSPGSQVQVRVDWERRFDHMQQHSGQHLITAVAD 120

Query: 111 KMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDP 170
            +FG  T SW  G     +EL +    +T   +AAIEQ  N KIR  + V   E    DP
Sbjct: 121 LLFGLKTTSWELGRLRSVIELDSPS--VTAEQVAAIEQSVNQKIRDRLPVSVRELSLDDP 178

Query: 171 ALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLC 230
            ++    RGLP DH G IR+V I+G+D+NMCCGTHV N+S LQ IK+L T + +K+KS  
Sbjct: 179 EVEQVRGRGLPDDHAGPIRVVTIEGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNKSNL 238

Query: 231 IYLYLLGRRLM 241
           I+L   G R++
Sbjct: 239 IFLA--GNRVL 247

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
ZFIN|ZDB-GENE-040801-91	412	aarsd1 "alanyl-tRNA synthetase	0.967	0.575	0.44	9.2e-52
RGD|1561650	412	Aarsd1 "alanyl-tRNA synthetase	0.967	0.575	0.418	7.7e-48
FB|FBgn0029664	436	CG10802 [Drosophila melanogast	0.971	0.545	0.434	6.2e-46
UNIPROTKB|K7N7A3	264	AARSD1 "Alanyl-tRNA-editing pr	0.963	0.893	0.408	1.6e-45
UNIPROTKB|Q9BTE6	412	AARSD1 "Alanyl-tRNA editing pr	0.963	0.572	0.408	1.6e-45
UNIPROTKB|Q32LK1	444	AARSD1 "Alanyl-tRNA editing pr	0.967	0.533	0.402	3.4e-45
UNIPROTKB|F1MZR1	444	AARSD1 "Alanyl-tRNA-editing pr	0.967	0.533	0.402	5.6e-45
RGD|2324034	543	LOC100366224 "alanyl-tRNA synt	0.844	0.381	0.440	1.2e-44
UNIPROTKB|C9J5N1	495	PTGES3L-AARSD1 "Protein PTGES3	0.844	0.418	0.426	7.3e-43
UNIPROTKB|F1NC49	522	AARSD1 "Uncharacterized protei	0.918	0.431	0.402	1.5e-42

ZFIN|ZDB-GENE-040801-91 aarsd1 "alanyl-tRNA synthetase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 110/250 (44%), Positives = 155/250 (62%)

Query:     1 MVFLCQRNCSLKEYKSKVVSCK------RNETRP---TEYHVRMEDTIFFPTGGGQHCDK 51
             M F CQR+C ++E+ S VVSC        N  R    T ++V+++DTI FP GGGQ  D 
Sbjct:     1 MAFQCQRDCYMQEFDSCVVSCVPAELKLENNGRKEKLTGFNVKLKDTILFPEGGGQPDDH 60

Query:    52 GTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDK 111
             GT+GGV V+ V R G +AVH V+   + G+ + +K+DW  R D  QQH+GQHL++A+ D 
Sbjct:    61 GTIGGVPVLRVLRQGPDAVHFVSSALEEGQEVHIKLDWERRFDHMQQHSGQHLITALADT 120

Query:   112 MFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPA 171
             MFGY T SW+ G     +EL T    +   ++ A+E   N KIR  V V  +     DPA
Sbjct:   121 MFGYKTTSWDLGRQRSSIELDTAT--VKPGEMEALETAVNEKIRAHVPVTVNLLSIDDPA 178

Query:   172 LKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCI 231
             ++   +RGLP DH G IRI+ I+G+D NMCCGTHV N+S LQ IK+L T + +K+K+  I
Sbjct:   179 VEKVRSRGLPDDHAGPIRIIDIEGVDANMCCGTHVSNLSHLQVIKILGTEKGKKNKTNLI 238

Query:   232 YLYLLGRRLM 241
             ++   G R++
Sbjct:   239 FI--AGNRVL 246

GO:0016876 "ligase activity, forming aminoacyl-tRNA and related compounds" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043039 "tRNA aminoacylation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1561650 Aarsd1 "alanyl-tRNA synthetase domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 105/251 (41%), Positives = 147/251 (58%)

Query:     1 MVFLCQRNCSLKEYKSKVVSCKRNETRP----------TEYHVRMEDTIFFPTGGGQHCD 50
             M FLCQR+   +E+ + VVSC   E +           + + V +EDT+ FP GGGQ  D
Sbjct:     1 MAFLCQRDSYAREFTTTVVSCCPAELQTDGNGSKKEVLSGFQVVLEDTLLFPEGGGQPDD 60

Query:    51 KGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVID 110
             +GT+  + V+ V R G +A H        G  + +++DW  R D  QQH+GQHL++AV D
Sbjct:    61 RGTINDISVLRVTRRGAQADHFTQTPLSPGSQVQVRVDWERRFDHMQQHSGQHLITAVAD 120

Query:   111 KMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDP 170
              +FG  T SW  G   C +EL +    +T   +AAIEQ  N KIR  + V   E    DP
Sbjct:   121 LLFGLKTTSWELGKLRCVIELDSPS--VTAEQVAAIEQSVNQKIRDRLPVSVRELSLDDP 178

Query:   171 ALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLC 230
              ++    RGLP DH G IR+V I+G+D+NMCCGTHV+N+S LQ IK+L T + +K+KS  
Sbjct:   179 EVEQVRGRGLPDDHAGPIRVVTIEGVDSNMCCGTHVNNLSDLQVIKILGTEKGKKNKSNL 238

Query:   231 IYLYLLGRRLM 241
             I+L   G R++
Sbjct:   239 IFL--AGNRVL 247

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0002196 "Ser-tRNA(Ala) hydrolase activity" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004813 "alanine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006419 "alanyl-tRNA aminoacylation" evidence=IEA

GO:0006450 "regulation of translational fidelity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

FB|FBgn0029664 CG10802 [Drosophila melanogaster (taxid:7227)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 112/258 (43%), Positives = 160/258 (62%)

Query:     1 MVFLCQRNCSLKEYKSKVVSCK---RNETRPTE-------YHVRMEDTIFFPTGGGQHCD 50
             MVF CQ +  LKE+K+K+VS +    + T P+        ++V  EDTI FP GGGQ CD
Sbjct:     1 MVFKCQEDSFLKEFKTKIVSSEFATLDWTDPSGKVEKLKGFNVICEDTILFPEGGGQPCD 60

Query:    51 KGTLGGVEVVDVYRDGDEAVHVVNK--EF-QVGELLDMKIDWAHRLDQTQQHTGQHLLSA 107
              GTLGG  V +V R G  AVH V     F Q  E+L + +D+  RLD  QQH+GQHL++A
Sbjct:    61 YGTLGGFPVKNVQRKGSTAVHFVESPTSFEQDAEVL-LTLDYQRRLDHMQQHSGQHLITA 119

Query:   108 VIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQP 167
             + D+ F YDT SW+ GS V  ++L+T    ++   +  IE++ N+ IR+G +V      P
Sbjct:   120 LFDREFKYDTTSWSLGSTVSYIQLSTPHL-ISRESLDLIERQANDLIREGREVTVLLVDP 178

Query:   168 G-DPALKTAHT-RGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQK 225
                   + A   RGLPKDH+G  R+V I+GI++NMCCGTHV N+SQLQ IKLL    A+K
Sbjct:   179 EVAQEFQDARAPRGLPKDHEGLARVVRIEGIESNMCCGTHVTNLSQLQCIKLLY---AEK 235

Query:   226 SKSLCIYLYLLGRRLMIQ 243
              K+  +  +++G R++++
Sbjct:   236 VKANVLVHFVVGERVLVK 253

GO:0005524 "ATP binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004813 "alanine-tRNA ligase activity" evidence=IEA

GO:0006419 "alanyl-tRNA aminoacylation" evidence=IEA

UNIPROTKB|K7N7A3 AARSD1 "Alanyl-tRNA-editing protein Aarsd1" [Homo sapiens (taxid:9606)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 103/252 (40%), Positives = 146/252 (57%)

Query:     1 MVFLCQRNCSLKEYKSKVVSCKRNETRPTE-----------YHVRMEDTIFFPTGGGQHC 49
             M F CQR+   +E+ + VVSC   E + TE           + V +EDT+ FP GGGQ  
Sbjct:     1 MAFWCQRDSYAREFTTTVVSCCPAELQ-TEGSNGKKEVLSGFQVVLEDTVLFPEGGGQPD 59

Query:    50 DKGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVI 109
             D+GT+  + V+ V R G++A H        G  + +++DW  R D  QQH+GQHL++AV 
Sbjct:    60 DRGTINDISVLRVTRRGEQADHFTQTPLDPGSQVLVRVDWERRFDHMQQHSGQHLITAVA 119

Query:   110 DKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGD 169
             D +F   T SW  G     +EL T    +T   +AAIEQ  N KIR  + V   E    D
Sbjct:   120 DHLFKLKTTSWELGRFRSAIELDTPS--MTAEQVAAIEQSVNEKIRDRLPVNVRELSLDD 177

Query:   170 PALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSL 229
             P ++    RGLP DH G IR+V+I+G+D+NMCCGTHV N+S LQ IK+L T + +K+++ 
Sbjct:   178 PEVEQVSGRGLPDDHAGPIRVVNIEGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNRTN 237

Query:   230 CIYLYLLGRRLM 241
              I+L   G R++
Sbjct:   238 LIFLS--GNRVL 247

GO:0004813 "alanine-tRNA ligase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006419 "alanyl-tRNA aminoacylation" evidence=IEA

UNIPROTKB|Q9BTE6 AARSD1 "Alanyl-tRNA editing protein Aarsd1" [Homo sapiens (taxid:9606)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 103/252 (40%), Positives = 146/252 (57%)

Query:     1 MVFLCQRNCSLKEYKSKVVSCKRNETRPTE-----------YHVRMEDTIFFPTGGGQHC 49
             M F CQR+   +E+ + VVSC   E + TE           + V +EDT+ FP GGGQ  
Sbjct:     1 MAFWCQRDSYAREFTTTVVSCCPAELQ-TEGSNGKKEVLSGFQVVLEDTVLFPEGGGQPD 59

Query:    50 DKGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVI 109
             D+GT+  + V+ V R G++A H        G  + +++DW  R D  QQH+GQHL++AV 
Sbjct:    60 DRGTINDISVLRVTRRGEQADHFTQTPLDPGSQVLVRVDWERRFDHMQQHSGQHLITAVA 119

Query:   110 DKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGD 169
             D +F   T SW  G     +EL T    +T   +AAIEQ  N KIR  + V   E    D
Sbjct:   120 DHLFKLKTTSWELGRFRSAIELDTPS--MTAEQVAAIEQSVNEKIRDRLPVNVRELSLDD 177

Query:   170 PALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSL 229
             P ++    RGLP DH G IR+V+I+G+D+NMCCGTHV N+S LQ IK+L T + +K+++ 
Sbjct:   178 PEVEQVSGRGLPDDHAGPIRVVNIEGVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNRTN 237

Query:   230 CIYLYLLGRRLM 241
              I+L   G R++
Sbjct:   238 LIFLS--GNRVL 247

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004813 "alanine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006419 "alanyl-tRNA aminoacylation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q32LK1 AARSD1 "Alanyl-tRNA editing protein Aarsd1" [Bos taurus (taxid:9913)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 101/251 (40%), Positives = 143/251 (56%)

Query:     1 MVFLCQRNCSLKEYKSKVVSCKRNETRPTE----------YHVRMEDTIFFPTGGGQHCD 50
             M F CQR+   +E+ + VVSC+  E    E          + V +EDT+ FP GGGQ  D
Sbjct:     1 MAFRCQRDSYAREFTTTVVSCRPAELHTEESNGKKEVLSGFQVVLEDTLLFPEGGGQPDD 60

Query:    51 KGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVID 110
             +GT+  + V+ V R G +A H        G  + +++DW  R D  QQH+GQHL++AV D
Sbjct:    61 RGTINDISVLRVTRRGTQADHFTQTPLTPGTEVQVRVDWERRFDHMQQHSGQHLITAVAD 120

Query:   111 KMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDP 170
              +FG  T SW  G     +EL +    +T   +AAIE+  N KIR  + V   E    DP
Sbjct:   121 DLFGLKTTSWELGRLRSVIELDSPT--VTAEQVAAIERSVNEKIRDRLPVNVRELSLDDP 178

Query:   171 ALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLC 230
              ++    RGLP DH G IR+V I+ +D+NMCCGTHV N+S LQ IK+L T + +K+K+  
Sbjct:   179 EVEQVRGRGLPDDHAGPIRVVTIESVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNKTNL 238

Query:   231 IYLYLLGRRLM 241
             I+L   G R++
Sbjct:   239 IFL--AGNRVL 247

GO:0005737 "cytoplasm" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006419 "alanyl-tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004813 "alanine-tRNA ligase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1MZR1 AARSD1 "Alanyl-tRNA-editing protein Aarsd1" [Bos taurus (taxid:9913)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 101/251 (40%), Positives = 142/251 (56%)

Query:     1 MVFLCQRNCSLKEYKSKVVSCKRNETRPTE----------YHVRMEDTIFFPTGGGQHCD 50
             M F CQR+   +E+ + VVSC+  E    E          + V +EDT+ FP GGGQ  D
Sbjct:     1 MAFRCQRDSYAREFTTTVVSCRPAELHTEESNGKKEVLSGFQVVLEDTLLFPEGGGQPDD 60

Query:    51 KGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVID 110
             +GT+  + V+ V R G +A H        G  + +++DW  R D  QQH+GQHL++AV D
Sbjct:    61 RGTINDISVLRVTRRGTQADHFTQTPLTPGTEVQVRVDWERRFDHMQQHSGQHLITAVAD 120

Query:   111 KMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDP 170
              +FG  T SW  G     +EL +    +T   +AAIE+  N KIR  + V   E    DP
Sbjct:   121 DLFGLKTTSWELGRLRSVIELDSPT--VTAEQVAAIERSVNEKIRDRLPVNVRELSLDDP 178

Query:   171 ALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLC 230
              ++    RGLP DH G IR+V I  +D+NMCCGTHV N+S LQ IK+L T + +K+K+  
Sbjct:   179 EVEQVRGRGLPDDHAGPIRVVTIQSVDSNMCCGTHVSNLSDLQVIKILGTEKGKKNKTNL 238

Query:   231 IYLYLLGRRLM 241
             I+L   G R++
Sbjct:   239 IFL--AGNRVL 247

GO:0006419 "alanyl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004813 "alanine-tRNA ligase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

RGD|2324034 LOC100366224 "alanyl-tRNA synthetase domain containing 1-like" [Rattus norvegicus (taxid:10116)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 93/211 (44%), Positives = 129/211 (61%)

Query:    31 YHVRMEDTIFFPTGGGQHCDKGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWA 90
             + V +EDT+ FP GGGQ  D+GT+  + V+ V R G +A H        G  + +++DW 
Sbjct:   172 FQVVLEDTLLFPEGGGQPDDRGTINDISVLRVTRRGAQADHFTQTPLSPGSQVQVRVDWE 231

Query:    91 HRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQEC 150
              R D  QQH+GQHL++AV D +FG  T SW  G   C +EL +    +T   +AAIEQ  
Sbjct:   232 RRFDHMQQHSGQHLITAVADLLFGLKTTSWELGKLRCVIELDSPS--VTAEQVAAIEQSV 289

Query:   151 NNKIRQGVKVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNIS 210
             N KIR  + V   E    DP ++    RGLP DH G IR+V I+G+D+NMCCGTHV+N+S
Sbjct:   290 NQKIRDRLPVSVRELSLDDPEVEQVRGRGLPDDHAGPIRVVTIEGVDSNMCCGTHVNNLS 349

Query:   211 QLQSIKLLKTTRAQKSKSLCIYLYLLGRRLM 241
              LQ IK+L T + +K+KS  I+L   G R++
Sbjct:   350 DLQVIKILGTEKGKKNKSNLIFL--AGNRVL 378

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004813 "alanine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006419 "alanyl-tRNA aminoacylation" evidence=IEA

UNIPROTKB|C9J5N1 PTGES3L-AARSD1 "Protein PTGES3L-AARSD1" [Homo sapiens (taxid:9606)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 90/211 (42%), Positives = 128/211 (60%)

Query:    31 YHVRMEDTIFFPTGGGQHCDKGTLGGVEVVDVYRDGDEAVHVVNKEFQVGELLDMKIDWA 90
             + V +EDT+ FP GGGQ  D+GT+  + V+ V R G++A H        G  + +++DW 
Sbjct:   124 FQVVLEDTVLFPEGGGQPDDRGTINDISVLRVTRRGEQADHFTQTPLDPGSQVLVRVDWE 183

Query:    91 HRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQEC 150
              R D  QQH+GQHL++AV D +F   T SW  G     +EL T    +T   +AAIEQ  
Sbjct:   184 RRFDHMQQHSGQHLITAVADHLFKLKTTSWELGRFRSAIELDTPS--MTAEQVAAIEQSV 241

Query:   151 NNKIRQGVKVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNIS 210
             N KIR  + V   E    DP ++    RGLP DH G IR+V+I+G+D+NMCCGTHV N+S
Sbjct:   242 NEKIRDRLPVNVRELSLDDPEVEQVSGRGLPDDHAGPIRVVNIEGVDSNMCCGTHVSNLS 301

Query:   211 QLQSIKLLKTTRAQKSKSLCIYLYLLGRRLM 241
              LQ IK+L T + +K+++  I+L   G R++
Sbjct:   302 DLQVIKILGTEKGKKNRTNLIFLS--GNRVL 330

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004813 "alanine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006419 "alanyl-tRNA aminoacylation" evidence=IEA

UNIPROTKB|F1NC49 AARSD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 95/236 (40%), Positives = 136/236 (57%)

Query:    13 EYKSKVVSCKRNETRPTE----YHVRMEDTIFFPTGGG---QHCDKGTLGGVEVVDVYRD 65
             ++ +KVVSC+  E RP         R       P  G    Q  D+G +G V V+ V R 
Sbjct:   126 DFATKVVSCQEAELRPESGGEPMRARSGAARPGPDSGSLSPQPDDRGLIGAVPVLRVTRR 185

Query:    66 GDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSD 125
             G EAVH V    + G  + + +DW  R D  QQH+GQHL++A+ ++MFG+ T SW  G  
Sbjct:   186 GAEAVHFVETALEPGSAVLLSLDWERRFDHMQQHSGQHLITAIAEQMFGFKTTSWELGRQ 245

Query:   126 VCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKTAHTRGLPKDHK 185
                +EL T    +T   + A+EQ  N KIR+ + V   E    DP ++T  +RGLP DH 
Sbjct:   246 QSVIELDTPS--MTTEQMEALEQSVNEKIRERIPVTVRELAADDPEVETVRSRGLPGDHT 303

Query:   186 GSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYLLGRRLM 241
             G +R+V I+GID+NMCCGTHV N+S LQ IKL+ T + +K+K+  ++L   G R++
Sbjct:   304 GPVRVVDIEGIDSNMCCGTHVSNLSDLQVIKLICTEKGKKNKTNLVFL--AGNRVL 357

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016876 "ligase activity, forming aminoacyl-tRNA and related compounds" evidence=IEA

GO:0043039 "tRNA aminoacylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q46AR9	ALAXM_METBF	No assigned EC number	0.2711	0.8489	0.8559	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	245
COG2872	241	COG2872, COG2872, Predicted metal-dependent hydrol	2e-45
PRK13902	900	PRK13902, alaS, alanyl-tRNA synthetase; Provisiona	3e-28
TIGR03683	902	TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase	4e-28
COG0013	879	COG0013, AlaS, Alanyl-tRNA synthetase [Translation	1e-23
TIGR00344	851	TIGR00344, alaS, alanine--tRNA ligase	1e-17
PRK00252	865	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	1e-12
PLN02900	936	PLN02900, PLN02900, alanyl-tRNA synthetase	4e-11
smart00863	43	smart00863, tRNA_SAD, Threonyl and Alanyl tRNA syn	1e-09
pfam07973	44	pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synt	4e-09
PLN02961	223	PLN02961, PLN02961, alanine-tRNA ligase	3e-05

>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]

 Score =  151 bits (384), Expect = 2e-45
 Identities = 83/232 (35%), Positives = 120/232 (51%), Gaps = 29/232 (12%)

Query: 11  LKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVE----VVDVYRDG 66
           LKE+++ VV  + NE       + ++ TIF+PTGGGQ  D GTL        V DV +DG
Sbjct: 12  LKEFEATVVDVEDNE-------IVLDRTIFYPTGGGQPGDTGTLIWAGGEYVVEDVTKDG 64

Query: 67  DEAVHVV--NKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGS 124
           +E VHV+  + + +VG+ + +KIDW  R    + HT  HLLSAV+ K++G  T  +  G 
Sbjct: 65  EEIVHVLAEHAKLKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYGALTTGFEIGE 124

Query: 125 DVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEY-------QPGDPALKTAHT 177
           D   ++    D + TE +I  +E   N  +++ + V             PG   LK    
Sbjct: 125 DYARIDF---DGEDTEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKN--- 178

Query: 178 RGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSL 229
             +P D +G IRIV I  ID   C GTHV N  ++  IK+LKT +  K K  
Sbjct: 179 -KVPPDVEGKIRIVEIGDIDVQPCGGTHVKNTGEIGEIKILKTEK--KGKGN 227

Length = 241

>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional

 Score =  112 bits (282), Expect = 3e-28
 Identities = 71/237 (29%), Positives = 104/237 (43%), Gaps = 46/237 (19%)

Query: 11  LKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTL----GGVEVVDVYRDG 66
           ++E+++KV+    N       +V ++ T F+P GGGQ  D G L     G +VVDV + G
Sbjct: 507 MREFEAKVLGVIDN-------YVVLDQTAFYPEGGGQPADTGVLIVDGKGYKVVDVQKVG 559

Query: 67  DEAVHVVNKEF-QVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSD 125
              VHV+  E  + G+ +  +IDW  R    + HT  H++ A   K+ G     W  G+ 
Sbjct: 560 GVIVHVLEGEPPKKGDEVRGEIDWERRYRLMRHHTATHIILAAARKVLG--DHVWQAGAQ 617

Query: 126 VCDVELATKD----KDLTEADIAAIEQECNNKIRQGVKVWASE--------------YQP 167
              V+ A  D    K +T  ++  IE+  N  + +   V                  YQ 
Sbjct: 618 K-TVDKARLDITHYKRITREEVKEIERLANEIVMENRPVKVEWMDRNEAEQKYGFRLYQG 676

Query: 168 GDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQ 224
           G P  KT             IR+V I   D   C GTHV N  ++  IK+LKT R Q
Sbjct: 677 GVPPGKT-------------IRVVEIGDWDVEACGGTHVSNTGEIGPIKILKTERIQ 720

Length = 900

>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase

 Score =  112 bits (281), Expect = 4e-28
 Identities = 71/236 (30%), Positives = 105/236 (44%), Gaps = 46/236 (19%)

Query: 12  KEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTL----GGVEVVDVYRDGD 67
           +E+++KV+    N       +V ++ T F+P GGGQ  D G L    G   VVDV + G 
Sbjct: 512 REFEAKVLGVFDN-------YVVLDQTAFYPEGGGQPADTGYLITNGGEYRVVDVQKVGG 564

Query: 68  EAVHVVNKE-FQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDV 126
             VH V+ E  + G+ +  +IDW  RL   + HT  H+L A   ++ G     W  G+  
Sbjct: 565 VIVHKVDGEGIKEGDEVKGEIDWERRLRLMRHHTATHVLLAAARRVLG--RHVWQAGAQK 622

Query: 127 CDVELATKD----KDLTEADIAAIEQECNNKIRQGVKVW--------ASE------YQPG 168
            D + A  D    K ++E +I  IE+  N  + +   V         A +      YQ G
Sbjct: 623 -DTDKARLDITHYKRISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQKYGFRLYQGG 681

Query: 169 DPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQ 224
            P  +              IR+V I+  D   C GTH  N  ++  IK+LKT R Q
Sbjct: 682 VPPGRE-------------IRVVEIEDWDVQACGGTHCRNTGEIGPIKILKTERIQ 724

This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases. Length = 902

>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score = 98.9 bits (247), Expect = 1e-23
 Identities = 61/215 (28%), Positives = 89/215 (41%), Gaps = 31/215 (14%)

Query: 30  EYHVRMEDTIFFPTGGGQHCDKGTL-----GGVEVVDVYRDGDEA-VHVV---NKEFQVG 80
           E +V ++ T F+   GGQ  D G +     G  EV DV + G+   VH     + E +VG
Sbjct: 489 EVYVVLDQTPFYAESGGQVGDTGYIFGDGGGRFEVTDVQKVGNGVIVHKGKVESGELKVG 548

Query: 81  ELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKD----K 136
           + +  ++D   R    + HT  HLL A + K+ G     W  GS V D E    D    K
Sbjct: 549 DEVTAEVDEERRRRLMRNHTATHLLHAALRKVLG--DHVWQAGSLV-DPEKLRFDFSHYK 605

Query: 137 DLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKTAHTRGL-------PKDHKGSIR 189
            LT  ++  IE+  N  IR+ + V   E       L  A  +G          D    +R
Sbjct: 606 ALTAEELKEIERLVNEIIRENLPVKTEE-----MDLDEAKAKGAMALFGEKYGDE---VR 657

Query: 190 IVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQ 224
           +V I      +C GTHV N   +   K++      
Sbjct: 658 VVEIGDFSVELCGGTHVSNTGDIGLFKIISEEGIA 692

Length = 879

>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase

 Score = 81.7 bits (202), Expect = 1e-17
 Identities = 53/207 (25%), Positives = 85/207 (41%), Gaps = 15/207 (7%)

Query: 30  EYHVRMEDTIFFPTGGGQHCDKGTL----GGVEVVDVYRDGDEAVH---VVNKEFQVGEL 82
             +V ++ T F+   GGQ  D G L    G   VVDV +      H   V     +VG+ 
Sbjct: 484 SVYVILDQTPFYAESGGQIGDTGYLIANDGKFRVVDVQKPNGVVFHFGEVEGGSLKVGDK 543

Query: 83  LDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKD----KDL 138
           +   ID   RL   + H+  HLL A + K+ G     W  GS V  V+    D    + L
Sbjct: 544 VIAVIDEKRRLRIMRNHSATHLLHAALQKVLG--NHVWQAGSLV-SVKKLRFDFSHYRAL 600

Query: 139 TEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDN 198
           T  ++  IE   N +I   + +    +   D A          + +   +R+V +  +  
Sbjct: 601 TREELEKIEDLVNEQILANIPI-KVIFMDLDEAKAKGAFALFGEKYGEKVRVVSVGDVSV 659

Query: 199 NMCCGTHVDNISQLQSIKLLKTTRAQK 225
            +C GTHV N  ++   K++K +    
Sbjct: 660 ELCGGTHVRNTGEIGLFKIVKESGIAA 686

The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP) [Protein synthesis, tRNA aminoacylation]. Length = 851

>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed

 Score = 66.6 bits (164), Expect = 1e-12
 Identities = 51/204 (25%), Positives = 80/204 (39%), Gaps = 37/204 (18%)

Query: 38  TIFFPTGGGQHCDKGTLGG---VEVVDVYRDGDEA-VH---VVNKEFQVGELLDMKIDWA 90
           T F+   GGQ  D G +      EV D  +  +   VH   V   E +VG+ +  ++D  
Sbjct: 485 TPFYAESGGQVGDTGVIEDGGVFEVTDTQKPPNGLIVHRGKVEEGELKVGDEVTAEVDEE 544

Query: 91  HRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKD----KDLTEADIAAI 146
            R    + H+  HLL A + ++ G        GS V   +    D    + LT  ++  I
Sbjct: 545 RRRAIARNHSATHLLHAALREVLGEHVT--QAGSLV-APDRLRFDFSHFEALTPEELRKI 601

Query: 147 EQECNNKIRQGVKVWASEYQPGDPALKTAHTRGLPKDHKGSI-----------RIVHIDG 195
           E   N KIR+ + V  +E    + A K            G++           R+V I  
Sbjct: 602 EDLVNEKIRENLPV-ETEEMSIEEAKK-----------MGAMALFGEKYGDEVRVVSIGD 649

Query: 196 IDNNMCCGTHVDNISQLQSIKLLK 219
               +C GTHV N   +   K++ 
Sbjct: 650 FSIELCGGTHVSNTGDIGLFKIVS 673

Length = 865

>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 57/212 (26%), Positives = 89/212 (41%), Gaps = 36/212 (16%)

Query: 30  EYHVRMEDTIFFPTGGGQHCDKGTLGG-----VEVVDVYRDGDEAVH---VVNKEFQVGE 81
           E  + ++ T F+   GGQ  D G L G     VEV DV + G   +H   V      VG+
Sbjct: 521 EVGIVLDKTSFYAESGGQIGDTGVLEGSGGAVVEVSDVQKAGGFVLHIGTVTEGSVSVGD 580

Query: 82  LLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELA---TKDKDL 138
            +  K+D+  R      HT  HLL++ + ++ G   +    GS V   +L    +  K +
Sbjct: 581 AVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVD--QKGSLVAFEKLRFDFSHGKPM 638

Query: 139 TEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKTAHTRGLPKDHKGSI---------- 188
           T  ++  +E   N  I   + V A E       L  A      K   G            
Sbjct: 639 TPEELREVESLVNEWIGDALPVEAKEM-----PLADA------KRINGLRAVFGEKYPDP 687

Query: 189 -RIVHIDGIDN-NMCCGTHVDNISQLQSIKLL 218
            R+V + G+ +  +C GTHV N ++ ++ KLL
Sbjct: 688 VRVVSVGGVYSMELCGGTHVSNTAEAEAFKLL 719

Length = 936

>gnl|CDD|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain

 Score = 52.4 bits (127), Expect = 1e-09
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 188 IRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQK 225
           +R+V I      +C GTHV N  ++ + K+L  + A  
Sbjct: 1   VRVVSIGDFSVELCGGTHVPNTGEIGAFKILSVSGAYW 38

The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain. Length = 43

>gnl|CDD|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain

 Score = 50.9 bits (123), Expect = 4e-09
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 188 IRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQK 225
           +R+V I   D ++C GTHV N  ++ + K+LK     K
Sbjct: 1   VRVVRIGDFDVDLCGGTHVPNTGEIGAFKILKGDSKNK 38

The catalytically active from of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain. Length = 44

>gnl|CDD|178546 PLN02961, PLN02961, alanine-tRNA ligase

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 55/211 (26%), Positives = 78/211 (36%), Gaps = 46/211 (21%)

Query: 38  TIFFPTGGGQHCDKGTLGGVE------VVDVYRDGDEAVHV---------VNKEFQVGEL 82
           TIF P GGGQ  D G +          V DV R      H              F+ G+ 
Sbjct: 10  TIFHPQGGGQPSDTGRIVISGGDTKFSVQDVRRKDGVVYHYGVFEGSNPESASPFEAGDE 69

Query: 83  LDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCG------------SDVCDVE 130
           + + +D + R   ++ H+  HLL   +             G             D   VE
Sbjct: 70  VTVTVDESRRKLHSRLHSAGHLLDVCMA----------RVGLGPLEPGKGYHFPDGPFVE 119

Query: 131 LATK-DKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKTAHTRGLP----KDHK 185
              K  +   ++    +E E N  I +G KV A+   P D A        LP    KD  
Sbjct: 120 YKGKIPQGELDSKQDELEAEANELIAEGGKVSAAVL-PYDEA-AELCGGSLPDYIAKD-- 175

Query: 186 GSIRIVHIDGIDNNMCCGTHVDNISQLQSIK 216
            + RIV I       C GTHV ++S++ S+K
Sbjct: 176 STPRIVKIGDSPGCPCGGTHVADVSEITSVK 206

Length = 223

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
COG2872	241	Predicted metal-dependent hydrolases related to al	100.0
TIGR03683	902	A-tRNA_syn_arch alanyl-tRNA synthetase. This famil	100.0
PRK13902	900	alaS alanyl-tRNA synthetase; Provisional	100.0
TIGR00344	851	alaS alanine--tRNA ligase. The model describes ala	100.0
PRK00252	865	alaS alanyl-tRNA synthetase; Reviewed	100.0
PLN02900	936	alanyl-tRNA synthetase	100.0
PLN02961	223	alanine-tRNA ligase	100.0
COG0013	879	AlaS Alanyl-tRNA synthetase [Translation, ribosoma	100.0
KOG2105|consensus	415		100.0
KOG0188|consensus	895		100.0
PRK01584	594	alanyl-tRNA synthetase; Provisional	99.96
PLN02837	614	threonine-tRNA ligase	99.89
PRK12305	575	thrS threonyl-tRNA synthetase; Reviewed	99.87
PRK00413	638	thrS threonyl-tRNA synthetase; Reviewed	99.84
PRK12444	639	threonyl-tRNA synthetase; Reviewed	99.82
PLN02908	686	threonyl-tRNA synthetase	99.8
TIGR00418	563	thrS threonyl-tRNA synthetase. This model represen	99.71
COG0441	589	ThrS Threonyl-tRNA synthetase [Translation, riboso	99.66
PF07973	44	tRNA_SAD: Threonyl and Alanyl tRNA synthetase seco	99.64
PF01411	552	tRNA-synt_2c: tRNA synthetases class II (A); Inter	99.62
smart00863	44	tRNA_SAD Threonyl and Alanyl tRNA synthetase secon	99.47
PRK14799	545	thrS threonyl-tRNA synthetase; Provisional	98.42
KOG1637|consensus	560		97.69

>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]

Probab=100.00  E-value=9.9e-60  Score=395.53  Aligned_cols=228  Identities=36%  Similarity=0.579  Sum_probs=203.5

Q ss_pred             ccccccCCCceeeeEEEEEEeCCCCCceeEEEecCcccccCCCCCCCCeeEEc----eEEEEEEEEeCCEEEEEEcc--c
Q psy12707          3 FLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLG----GVEVVDVYRDGDEAVHVVNK--E   76 (245)
Q Consensus         3 ~~~~~d~y~~~~~a~v~~~~~~~~~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i~----~~~V~~v~~~~~~i~H~~~~--~   76 (245)
                      .+|++|+|+++++|+|+++..+       .|+||+|+|||+|||||+|+|+|.    ...+.++.+.+..|+|+++.  .
T Consensus         4 ~ly~~D~y~~e~~~~v~~v~~~-------~i~ld~T~Fyp~~GGQp~D~G~l~~~~~~~~~~~~~~~~~~I~H~~~~~~~   76 (241)
T COG2872           4 KLYYDDSYLKEFEATVVDVEDN-------EIVLDRTIFYPTGGGQPGDTGTLIWAGGEYVVEDVTKDGEEIVHVLAEHAK   76 (241)
T ss_pred             ceeccccccccceEEEEEEeCC-------eEEEEeccccCCCCCCcCCceEEEeCCceEEEEEEEecceEEEEEecCccc
Confidence            5788999999999999999843       799999999999999999999996    46677888888899999975  3


Q ss_pred             cCCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCcccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHc
Q psy12707         77 FQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQ  156 (245)
Q Consensus        77 ~~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~  156 (245)
                      +++|+.|.+.|||+||+++||+|||+|||++++.+.++..+.+++++++.+++||+.+.   +++.+.++++++|+++.+
T Consensus        77 ~~vG~~V~~~IDW~rRy~~mr~HTa~Hlls~~~~~~~~~~~~g~~i~~d~~~iD~~~e~---~~~~~~~v~~~~ne~v~~  153 (241)
T COG2872          77 LKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYGALTTGFEIGEDYARIDFDGED---TEDEIEEVEALANELVKE  153 (241)
T ss_pred             CCCCCEEEEEECcHHHHHHHhhhHHHHHHHHHhhccccceeecceeccccccccccccc---chhhHHHHHHHHHHHHHc
Confidence            78999999999999999999999999999999999999888899999999999999863   678999999999999999


Q ss_pred             CCceeEEEcCCCcc-ccccccc--cCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeeccccCCCeEEEE
Q psy12707        157 GVKVWASEYQPGDP-ALKTAHT--RGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYL  233 (245)
Q Consensus       157 ~~~v~~~~~~~~ea-~~~~~~~--~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~Ri~  233 (245)
                      |+++...+++.+|+ .......  ...|+...+.+|+|+|+|+|++|||||||+||+|||.|+|++..  +|+|+..||+
T Consensus       154 ~~~v~~~~i~~EE~~~~p~~~~~~~~~~~~~~g~iRiV~I~did~qpCgGtHVk~T~EIG~Iki~k~e--~k~k~~~Rv~  231 (241)
T COG2872         154 NLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIRIVEIGDIDVQPCGGTHVKNTGEIGEIKILKTE--KKGKGNRRVY  231 (241)
T ss_pred             CCeeeeeecCHHHHhhCcChhhhcccCCccccceEEEEEECCeeccCCCCcccCCccceEEEEEEEEE--EecCceEEEE
Confidence            99999999999988 3333221  13555556799999999999999999999999999999999993  5669999999


Q ss_pred             EEEchhhhh
Q psy12707        234 YLLGRRLMI  242 (245)
Q Consensus       234 ~~~G~~a~~  242 (245)
                      |.+|.+|..
T Consensus       232 f~~~~~~~~  240 (241)
T COG2872         232 FTLGERASA  240 (241)
T ss_pred             EEecccccC
Confidence            999999865

>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase

Probab=100.00  E-value=1.5e-56  Score=437.20  Aligned_cols=230  Identities=26%  Similarity=0.412  Sum_probs=203.3

Q ss_pred             ccccccCCCceeeeEEEEEEeCCCCCceeEEEecCcccccCCCCCCCCeeEE----ceEEEEEEEEeCCEEEEEEccc-c
Q psy12707          3 FLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTL----GGVEVVDVYRDGDEAVHVVNKE-F   77 (245)
Q Consensus         3 ~~~~~d~y~~~~~a~v~~~~~~~~~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i----~~~~V~~v~~~~~~i~H~~~~~-~   77 (245)
                      ++||+|||+++++|+|+++.+       .+|+||+|+|||+|||||+|+|+|    ..++|.+|++.+|.++|+++.. +
T Consensus       503 ~l~y~~~~~~e~~a~Vl~i~~-------~~vvLd~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~~~~l  575 (902)
T TIGR03683       503 RLFYEDPTMREFEAKVLGVFD-------NYVVLDQTAFYPEGGGQPADTGYLITNGGKIRVVDVQKVGGVIVHKVDGEGI  575 (902)
T ss_pred             EeccccCccceEEEEEEEEEc-------CEEEEeCCCCCCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEeCCCCC
Confidence            589999999999999999982       479999999999999999999999    4699999999999999999764 8


Q ss_pred             CCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCc--ccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHH
Q psy12707         78 QVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDT--ESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIR  155 (245)
Q Consensus        78 ~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~--~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~  155 (245)
                      .+|++|.+.|||+||+.+|++|||+|||++|+++++|.++  .+.+++++.+++||+.... ++++++.+||+.+|++|.
T Consensus       576 ~~G~~V~~~VD~~rR~~~m~~HTAtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~-lt~eel~~IE~~vN~~I~  654 (902)
T TIGR03683       576 KEGDEVKGEIDWERRLRLMRHHTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHYKR-ISEEEIKEIERLANRIVM  654 (902)
T ss_pred             CCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCCCC-CCHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999753  3567788999999998665 999999999999999999


Q ss_pred             cCCceeEEEcCCCcccc-ccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeecccc-CCCeEEEE
Q psy12707        156 QGVKVWASEYQPGDPAL-KTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQK-SKSLCIYL  233 (245)
Q Consensus       156 ~~~~v~~~~~~~~ea~~-~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~-~~~~~Ri~  233 (245)
                      +|+||++.++++++|+. ..+....-.+.+++.||||+|+++|.++||||||.|||+||.|+|++.   ++ ++|..||+
T Consensus       655 ~n~pV~~~~~~~~eA~~~~~~~l~~~~~~~~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG~~kI~~~---~~i~~Gv~RIe  731 (902)
T TIGR03683       655 ENRPVSVKWMDRNEAEQKYGFRLYQGGVPPGREIRVVEIEDWDVQACGGTHCRNTGEIGPIKILKT---ERIQDGVERIE  731 (902)
T ss_pred             hCCCeEEEEeCHHHHHhcCchhhhccCCCCCCeEEEEEECCeeeeCCCCCCccchhcCceEEEEEE---EEecCCeEEEE
Confidence            99999999999988832 222211001234678999999999999999999999999999999999   54 48999999


Q ss_pred             EEEchhhhhh
Q psy12707        234 YLLGRRLMIQ  243 (245)
Q Consensus       234 ~~~G~~a~~~  243 (245)
                      |++|.+|+++
T Consensus       732 ~v~G~~A~~~  741 (902)
T TIGR03683       732 FAAGEAALEY  741 (902)
T ss_pred             EEEChHHHHH
Confidence            9999999875

This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.

>PRK13902 alaS alanyl-tRNA synthetase; Provisional

Probab=100.00  E-value=3.5e-56  Score=434.60  Aligned_cols=230  Identities=26%  Similarity=0.384  Sum_probs=202.6

Q ss_pred             ccccccCCCceeeeEEEEEEeCCCCCceeEEEecCcccccCCCCCCCCeeEEc----eEEEEEEEEeCCEEEEEEccc-c
Q psy12707          3 FLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLG----GVEVVDVYRDGDEAVHVVNKE-F   77 (245)
Q Consensus         3 ~~~~~d~y~~~~~a~v~~~~~~~~~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i~----~~~V~~v~~~~~~i~H~~~~~-~   77 (245)
                      ++||+|||+++++|+|+++..       .+|+||+|+|||+|||||+|+|+|.    .+.|.+|++.+|.++|+++.. +
T Consensus       499 ~l~y~~~~~~~~~a~Vl~i~~-------~~vvLD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~~~~~  571 (900)
T PRK13902        499 KLFYEDPYMREFEAKVLGVID-------NYVVLDQTAFYPEGGGQPADTGVLIVDGKGYKVVDVQKVGGVIVHVLEGEPP  571 (900)
T ss_pred             EeccccCccceEEEEEEEEEc-------CEEEEeCCCCCCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEeCCCCC
Confidence            589999999999999999982       3799999999999999999999997    699999999999999999754 4


Q ss_pred             CCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCc--ccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHH
Q psy12707         78 QVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDT--ESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIR  155 (245)
Q Consensus        78 ~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~--~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~  155 (245)
                      .+|++|.+.|||+||+++|++|||+|||++|+++++|.++  .+.+++++.+++||+.... ++++++.+||+.+|++|.
T Consensus       572 ~~G~~V~~~VD~~rR~~~mr~HTAtHLL~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~-lt~eel~~IE~~vN~~I~  650 (900)
T PRK13902        572 KKGDEVRGEIDWERRYRLMRHHTATHIILAAARKVLGDHVWQAGAQKTVDKARLDITHYKR-ITREEVKEIERLANEIVM  650 (900)
T ss_pred             CCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCCEEEEEeCCCC-CCHHHHHHHHHHHHHHHH
Confidence            4599999999999999999999999999999999999753  3567788999999998665 999999999999999999


Q ss_pred             cCCceeEEEcCCCcccc-ccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeecccc-CCCeEEEE
Q psy12707        156 QGVKVWASEYQPGDPAL-KTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQK-SKSLCIYL  233 (245)
Q Consensus       156 ~~~~v~~~~~~~~ea~~-~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~-~~~~~Ri~  233 (245)
                      +|+||++.++++++|+. ..+....-.+.+++.||||+|+|+|.++||||||.|||+||.|+|++.   ++ .+|..||+
T Consensus       651 ~n~pV~~~~~~~~eA~~~~~~~l~~~g~~~~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG~~kI~~~---e~i~~Gv~RIe  727 (900)
T PRK13902        651 ENRPVKVEWMDRNEAEQKYGFRLYQGGVPPGKTIRVVEIGDWDVEACGGTHVSNTGEIGPIKILKT---ERIQDGVERLE  727 (900)
T ss_pred             cCCCEEEEecCHHHHHhccchhhhccCCCCCCeEEEEEECCeeeeCCCCCCcCcHhhCeeEEEEEE---EEecCCeEEEE
Confidence            99999999999988832 222211001235678999999999999999999999999999999999   55 48889999


Q ss_pred             EEEchhhhhh
Q psy12707        234 YLLGRRLMIQ  243 (245)
Q Consensus       234 ~~~G~~a~~~  243 (245)
                      |++|.+|+++
T Consensus       728 ~v~G~~A~~~  737 (900)
T PRK13902        728 FAAGDAAVEY  737 (900)
T ss_pred             EEEChHHHHH
Confidence            9999999865

>TIGR00344 alaS alanine--tRNA ligase

Probab=100.00  E-value=9.9e-54  Score=416.33  Aligned_cols=233  Identities=21%  Similarity=0.299  Sum_probs=202.8

Q ss_pred             ccccccCCCceeeeEEEEEEeCCC------CCceeEEEecCcccccCCCCCCCCeeEEc----eEEEEEEEEeCCEEEEE
Q psy12707          3 FLCQRNCSLKEYKSKVVSCKRNET------RPTEYHVRMEDTIFFPTGGGQHCDKGTLG----GVEVVDVYRDGDEAVHV   72 (245)
Q Consensus         3 ~~~~~d~y~~~~~a~v~~~~~~~~------~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i~----~~~V~~v~~~~~~i~H~   72 (245)
                      .+||++   .+++|+|+++..++.      .++.++|+||+|+|||+|||||+|+|+|.    .++|.+|++.+|.++|+
T Consensus       454 ~l~Y~~---~~~~a~V~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~~~~V~dv~~~~g~i~H~  530 (851)
T TIGR00344       454 FLGYED---LEFEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAESGGQIGDTGYLIANDGKFRVVDVQKPNGVVFHF  530 (851)
T ss_pred             ccceec---ccccEEEEEEEeCCccceecccCCceEEEEeCCCCCCCCCCCCCCEEEEecCCcEEEEEEEEEECCEEEEE
Confidence            578888   789999999984321      12367899999999999999999999994    48999999999999999


Q ss_pred             E--c-cccCCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCc--ccccccCCceEEeeeCCCCCCCHHHHHHHH
Q psy12707         73 V--N-KEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDT--ESWNCGSDVCDVELATKDKDLTEADIAAIE  147 (245)
Q Consensus        73 ~--~-~~~~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~--~~~~~~~~~~~id~~~~~~~l~~~~l~~iE  147 (245)
                      +  . +++.+|++|.+.|||+||+.+|++|||+|||++|++++||..+  .+.+++++.+++||+.+.. ++++++.+||
T Consensus       531 ~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~-lt~eel~~IE  609 (851)
T TIGR00344       531 GEVEGGSLKVGDKVIAVIDEKRRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRA-LTREELEKIE  609 (851)
T ss_pred             EEeccCCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEecCCCC-CCHHHHHHHH
Confidence            5  2 4788999999999999999999999999999999999998754  4557788999999998765 9999999999


Q ss_pred             HHHHHHHHcCCceeEEEcCCCcccc-ccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeeccccC
Q psy12707        148 QECNNKIRQGVKVWASEYQPGDPAL-KTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKS  226 (245)
Q Consensus       148 ~~~n~~I~~~~~v~~~~~~~~ea~~-~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~  226 (245)
                      +.||++|++++||...++++++|+. ....  .++++|.+.||||+|+++|.++||||||+||++||.|+|++.+  +.+
T Consensus       610 ~~vNelI~~n~pV~~~~~~~eeA~~~~~~~--~~~e~y~~~VRVV~Ig~~d~e~CgGTHV~nTgeIg~~kI~~~~--~~~  685 (851)
T TIGR00344       610 DLVNEQILANIPIKVIFMDLDEAKAKGAFA--LFGEKYGEKVRVVSVGDVSVELCGGTHVRNTGEIGLFKIVKES--GIA  685 (851)
T ss_pred             HHHHHHHHhCCceEEEEeCHHHHHhcchhh--hcCCCCCCeEEEEEECCeeccCCCCCccCChhhCeEEEEEEEe--Eec
Confidence            9999999999999999999988832 2221  2456677889999999999999999999999999999999992  345


Q ss_pred             CCeEEEEEEEchhhhhh
Q psy12707        227 KSLCIYLYLLGRRLMIQ  243 (245)
Q Consensus       227 ~~~~Ri~~~~G~~a~~~  243 (245)
                      +|..||+|++|.+|+++
T Consensus       686 ~G~~RIe~v~G~~A~~~  702 (851)
T TIGR00344       686 AGVRRIEAVTGNAAIEY  702 (851)
T ss_pred             CCeEEEEEEEcHHHHHH
Confidence            89999999999999875

The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).

>PRK00252 alaS alanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=1.2e-53  Score=417.06  Aligned_cols=228  Identities=22%  Similarity=0.312  Sum_probs=199.3

Q ss_pred             ceeeeEEEEEEeCCC------CCceeEEEecCcccccCCCCCCCCeeEEc---eEEEEEEEEe-CCEEEEEE---ccccC
Q psy12707         12 KEYKSKVVSCKRNET------RPTEYHVRMEDTIFFPTGGGQHCDKGTLG---GVEVVDVYRD-GDEAVHVV---NKEFQ   78 (245)
Q Consensus        12 ~~~~a~v~~~~~~~~------~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i~---~~~V~~v~~~-~~~i~H~~---~~~~~   78 (245)
                      .+++|+|+++..+.+      .++.++|+||+|+|||+|||||+|+|+|.   .++|.+|++. +|.++|++   +++++
T Consensus       453 ~~~~a~v~~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~~~~~~V~~v~~~~~g~i~H~~~~~~~~l~  532 (865)
T PRK00252        453 LEAEAKVLALFVDGESVDSAKAGEEVEVVLDKTPFYAESGGQVGDTGVIEDGGVFEVTDTQKPPNGLIVHRGKVEEGELK  532 (865)
T ss_pred             ccccEEEEEEEeCCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEeeCcEEEEEEEEEccCCEEEEEEEeccCCCC
Confidence            578999999984311      12358899999999999999999999994   6999999997 99999998   56789


Q ss_pred             CCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCc--ccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHc
Q psy12707         79 VGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDT--ESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQ  156 (245)
Q Consensus        79 ~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~--~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~  156 (245)
                      +|++|.+.|||+||+.+|++|||+|||++|++++||..+  .+++++++++++||+.+.. ++++++.+||+.||++|++
T Consensus       533 ~G~~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~~~~~r~Df~~~~~-lt~eel~~IE~~vN~lI~~  611 (865)
T PRK00252        533 VGDEVTAEVDEERRRAIARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSHFEA-LTPEELRKIEDLVNEKIRE  611 (865)
T ss_pred             CCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeccCcccCCeEEEEeecCCC-CCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998754  3567788999999998665 9999999999999999999


Q ss_pred             CCceeEEEcCCCccccccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeeccccCCCeEEEEEEE
Q psy12707        157 GVKVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYLL  236 (245)
Q Consensus       157 ~~~v~~~~~~~~ea~~~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~Ri~~~~  236 (245)
                      ++||...++++++|+...... .++++|++.||||+|++++.++||||||+||++||.|+|++.+  ..++|..||+|++
T Consensus       612 n~pV~~~~~~~~eA~~~~~~~-~~~~~y~~~VRVV~Ig~~d~~~CgGTHV~nTgeIg~~kI~~~~--~~~~g~~RI~~v~  688 (865)
T PRK00252        612 NLPVETEEMSIEEAKKMGAMA-LFGEKYGDEVRVVSIGDFSIELCGGTHVSNTGDIGLFKIVSES--GVAAGVRRIEAVT  688 (865)
T ss_pred             CCCeEEEEeCHHHHHhCCchh-hccccCCCeEEEEEECCceeeCCCCCccCCcccCeEEEEEEEe--eecCCeEEEEEEE
Confidence            999999999999884322211 2456678899999999999999999999999999999999992  3448889999999


Q ss_pred             chhhhhh
Q psy12707        237 GRRLMIQ  243 (245)
Q Consensus       237 G~~a~~~  243 (245)
                      |.+|+++
T Consensus       689 G~~A~~~  695 (865)
T PRK00252        689 GEAALEY  695 (865)
T ss_pred             CHHHHHH
Confidence            9999865

>PLN02900 alanyl-tRNA synthetase

Probab=100.00  E-value=3.9e-53  Score=413.53  Aligned_cols=226  Identities=22%  Similarity=0.341  Sum_probs=198.2

Q ss_pred             eeeEEEEEEeCCC------CCceeEEEecCcccccCCCCCCCCeeEEc-----eEEEEEEEEeCCEEEEEE---ccccCC
Q psy12707         14 YKSKVVSCKRNET------RPTEYHVRMEDTIFFPTGGGQHCDKGTLG-----GVEVVDVYRDGDEAVHVV---NKEFQV   79 (245)
Q Consensus        14 ~~a~v~~~~~~~~------~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i~-----~~~V~~v~~~~~~i~H~~---~~~~~~   79 (245)
                      ++|+|+.+..+++      .++.++|+||+|+|||+|||||+|+|+|.     .+.|.+|++.+|.++|++   ++++.+
T Consensus       499 ~~~~v~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~~~~~V~dv~k~~g~i~H~~~~~~g~l~~  578 (936)
T PLN02900        499 HEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQIGDTGVLEGSGGAVVEVSDVQKAGGFVLHIGTVTEGSVSV  578 (936)
T ss_pred             cceEEEEEEECCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEecCCCCEEEEEEEEEECCEEEEEEEeccCCCCC
Confidence            7899999974321      12368899999999999999999999994     489999999999999996   457889


Q ss_pred             CCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCc--ccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcC
Q psy12707         80 GELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDT--ESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQG  157 (245)
Q Consensus        80 g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~--~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~  157 (245)
                      |++|.+.|||+||+.+|++|||+|||++|++++||..+  .+.+++++++++||+.+.. ++++++.+||+.||++|++|
T Consensus       579 G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~-lt~eel~~IE~~vNe~I~~n  657 (936)
T PLN02900        579 GDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKP-MTPEELREVESLVNEWIGDA  657 (936)
T ss_pred             CCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCCCC-CCHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999866  3567788999999998776 99999999999999999999


Q ss_pred             CceeEEEcCCCcccc-ccccccCCCCCCCCCeEEEEECCc-cccCCCCCccCCccCcccEEEEeeeccccCCCeEEEEEE
Q psy12707        158 VKVWASEYQPGDPAL-KTAHTRGLPKDHKGSIRIVHIDGI-DNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYL  235 (245)
Q Consensus       158 ~~v~~~~~~~~ea~~-~~~~~~~~p~~~~~~vRiv~i~~~-~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~Ri~~~  235 (245)
                      +||++.++++++|.. ..+.. .++++|.+.||||+|+++ |.++||||||.||++||.|+|++++  ..++|..||+|+
T Consensus       658 ~pV~~~~~~~eEA~~~~g~~~-~f~e~y~~~VRVV~Ig~~~d~elCGGTHV~nTgeIG~fkIls~~--~~~~G~rRIe~v  734 (936)
T PLN02900        658 LPVEAKEMPLADAKRINGLRA-VFGEKYPDPVRVVSVGGVYSMELCGGTHVSNTAEAEAFKLLSEE--GIAKGIRRITAV  734 (936)
T ss_pred             CCeEEEEcCHHHHhhccChHh-hcCCCCCCcEEEEEECCccceeCCCCCcCCccccCceEEEEEEe--eecCCeEEEEEE
Confidence            999999999998833 33321 145667889999999998 9999999999999999999999992  344888999999


Q ss_pred             Echhhhhh
Q psy12707        236 LGRRLMIQ  243 (245)
Q Consensus       236 ~G~~a~~~  243 (245)
                      +|.+|+++
T Consensus       735 ~G~~A~~~  742 (936)
T PLN02900        735 TGGAAVEA  742 (936)
T ss_pred             EcHHHHHH
Confidence            99999875

>PLN02961 alanine-tRNA ligase

Probab=100.00  E-value=4.2e-53  Score=356.78  Aligned_cols=197  Identities=27%  Similarity=0.383  Sum_probs=164.9

Q ss_pred             eeEEEecCcccccCCCCCCCCeeEEce------EEEEEEEEeCCEEEEEE--c-------cccCCCCEEEEEEchhhhHH
Q psy12707         30 EYHVRMEDTIFFPTGGGQHCDKGTLGG------VEVVDVYRDGDEAVHVV--N-------KEFQVGELLDMKIDWAHRLD   94 (245)
Q Consensus        30 ~~~i~ld~T~Fyp~gGGQ~~D~G~i~~------~~V~~v~~~~~~i~H~~--~-------~~~~~g~~v~~~iD~~~R~~   94 (245)
                      .+.|+||+|+|||+|||||+|+|+|..      +.|.+|++.+|.++|++  .       .+|.+|++|.+.|||+||+.
T Consensus         2 ~~~viLd~T~FYpegGGQp~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~~~~~~~~~~~l~~G~~V~~~ID~~rR~~   81 (223)
T PLN02961          2 RIALVLDRTIFHPQGGGQPSDTGRIVISGGDTKFSVQDVRRKDGVVYHYGVFEGSNPESASPFEAGDEVTVTVDESRRKL   81 (223)
T ss_pred             CeEEEeCCceEcCCCCCCCCcEEEEEecCCCcEEEEEEEEEECCEEEEEEEecCcccccCCCCCCCCEEEEEECHHHHhh
Confidence            468999999999999999999999963      88999999999999996  2       35889999999999999999


Q ss_pred             HHhhchHHHHHHHHHHHH-hCCC--cccccccCCceEEeeeCCCCCCCHHH----HHHHHHHHHHHHHcCCceeEEEcCC
Q psy12707         95 QTQQHTGQHLLSAVIDKM-FGYD--TESWNCGSDVCDVELATKDKDLTEAD----IAAIEQECNNKIRQGVKVWASEYQP  167 (245)
Q Consensus        95 ~~~~HTa~HlL~~al~~~-~g~~--~~~~~~~~~~~~id~~~~~~~l~~~~----l~~iE~~~n~~I~~~~~v~~~~~~~  167 (245)
                      +|++|||+|||++|++++ +|..  +.+++ .++++++||...   ++.++    +.+||+.+|++|++++||++.++++
T Consensus        82 ~m~~HTa~HLL~~al~~~~~~~~~~~~g~~-~~~~~~v~~~~~---i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~~~~~  157 (223)
T PLN02961         82 HSRLHSAGHLLDVCMARVGLGPLEPGKGYH-FPDGPFVEYKGK---IPQGELDSKQDELEAEANELIAEGGKVSAAVLPY  157 (223)
T ss_pred             hhccCcHHHHHHHHHHHcCCCccccccccc-cCCccceeeccc---CCHHHHHhHHHHHHHHHHHHHHcCCceeEEEeCH
Confidence            999999999999999986 5532  23344 456788888643   55544    5799999999999999999999999


Q ss_pred             CccccccccccCCCCC--CCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeeccccCCCeEEEEEE
Q psy12707        168 GDPALKTAHTRGLPKD--HKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYL  235 (245)
Q Consensus       168 ~ea~~~~~~~~~~p~~--~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~Ri~~~  235 (245)
                      ++|+..  .....|..  ..+.+|||+|+|++.+|||||||.||+|||.|+|+++   ++++|..||+|.
T Consensus       158 ~ea~~~--~~~~~~~~~~~~~~vRiV~I~~~d~~~CgGTHv~nT~eig~i~I~~~---~~~kg~~Rv~~~  222 (223)
T PLN02961        158 DEAAEL--CGGSLPDYIAKDSTPRIVKIGDSPGCPCGGTHVADVSEITSVKVTQI---RVKKGVTRVSYT  222 (223)
T ss_pred             HHHHHh--cCCcCCCcCCCCCceEEEEECCCccCccCCcccCchhccccEEEEEE---EecCCEEEEEEe
Confidence            888321  11112321  1467999999999999999999999999999999999   767999999986

>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.8e-51  Score=392.95  Aligned_cols=235  Identities=23%  Similarity=0.329  Sum_probs=203.8

Q ss_pred             ccccccCCCceeeeEEEEEEeC-CC---CCceeEEEecCcccccCCCCCCCCeeEEc-----eEEEEEEEEeC-CEEEEE
Q psy12707          3 FLCQRNCSLKEYKSKVVSCKRN-ET---RPTEYHVRMEDTIFFPTGGGQHCDKGTLG-----GVEVVDVYRDG-DEAVHV   72 (245)
Q Consensus         3 ~~~~~d~y~~~~~a~v~~~~~~-~~---~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i~-----~~~V~~v~~~~-~~i~H~   72 (245)
                      .++|++++.. +++.++..... .+   ..+..+|+||+|+|||+||||++|+|+|.     .+.|.+|++.+ +.++|.
T Consensus       459 f~gY~~~~~~-~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~~~~~~~~V~dvqK~~~~~~vH~  537 (879)
T COG0013         459 FLGYDDLEME-FKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFGDGGGRFEVTDVQKVGNGVIVHK  537 (879)
T ss_pred             eeecccccce-EEEEEEEecCcccccccCCceEEEEEecCCccCCCCCccCceEEEEecCCcEEEEEEEEEcCCceEEEE
Confidence            4678888888 77777665533 11   12367999999999999999999999995     37899999987 899999


Q ss_pred             Ecc---ccCCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCccc--ccccCCceEEeeeCCCCCCCHHHHHHHH
Q psy12707         73 VNK---EFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTES--WNCGSDVCDVELATKDKDLTEADIAAIE  147 (245)
Q Consensus        73 ~~~---~~~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~~~--~~~~~~~~~id~~~~~~~l~~~~l~~iE  147 (245)
                      +..   .+++|+.|.+.|||+||+++|++|||+|||++||++++|.++.+  ....++..++||+...+ +|++++++||
T Consensus       538 ~~~~~G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~-it~Eel~~IE  616 (879)
T COG0013         538 GKVESGELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKA-LTAEELKEIE  616 (879)
T ss_pred             EeeccCccCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCCC-CCHHHHHHHH
Confidence            853   69999999999999999999999999999999999999987643  23456789999999887 9999999999


Q ss_pred             HHHHHHHHcCCceeEEEcCCCccccccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeeccccC-
Q psy12707        148 QECNNKIRQGVKVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKS-  226 (245)
Q Consensus       148 ~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~-  226 (245)
                      ..+|++|++|+||...+++.++|+..++... +-++|++.||||+||++|+++||||||.|||+||.|||++.   +.. 
T Consensus       617 ~~vNe~I~~n~~V~~~~m~~~eAk~~Ga~al-fGekY~~~VRVV~ig~~SvElCGGTHv~~Tg~IG~fkI~~e---~~i~  692 (879)
T COG0013         617 RLVNEIIRENLPVKTEEMDLDEAKAKGAMAL-FGEKYGDEVRVVEIGDFSVELCGGTHVSNTGDIGLFKIISE---EGIA  692 (879)
T ss_pred             HHHHHHHHcCCceeEEEccHHHHHHhChHhh-cCCcCCCeEEEEEECCceeeccCCcccCCccceeeEEEEEe---cccc
Confidence            9999999999999999999999954444321 55678889999999999999999999999999999999999   544 


Q ss_pred             CCeEEEEEEEchhhhhh
Q psy12707        227 KSLCIYLYLLGRRLMIQ  243 (245)
Q Consensus       227 ~~~~Ri~~~~G~~a~~~  243 (245)
                      .|..||.+++|..|+++
T Consensus       693 aGVrRIeavtG~~a~~~  709 (879)
T COG0013         693 AGVRRIEAVTGEAALEY  709 (879)
T ss_pred             cCeEEEEEEcCHHHHHH
Confidence            99999999999999864

>KOG2105|consensus

Probab=100.00  E-value=1.9e-48  Score=327.38  Aligned_cols=237  Identities=43%  Similarity=0.715  Sum_probs=219.7

Q ss_pred             cccccccCCCceeeeEEEEEEeCCCCC---ceeEEEecCcccccCCCCCCCCeeEEceEEEEEEEEeCCEEEEEEccccC
Q psy12707          2 VFLCQRNCSLKEYKSKVVSCKRNETRP---TEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVVDVYRDGDEAVHVVNKEFQ   78 (245)
Q Consensus         2 ~~~~~~d~y~~~~~a~v~~~~~~~~~~---~~~~i~ld~T~Fyp~gGGQ~~D~G~i~~~~V~~v~~~~~~i~H~~~~~~~   78 (245)
                      ++.||.++++..|++.|++|.+.+..+   .++.+.|..|++||+|||||+|.|++..+.|..|.+.+...-|.+..++.
T Consensus        12 ~~~~~~~~~~~dfkt~vvsc~p~~~kk~eieg~~i~lqdtiLfpegggqp~d~gf~~~v~V~~VsR~G~~A~H~~~~~ie   91 (415)
T KOG2105|consen   12 ALACQRNSFLFDFKTLVVSCEPTKNKKGEIEGYEIELQDTILFPEGGGQPSDSGFLKIVEVSHVSRFGLHAKHHVNDYIE   91 (415)
T ss_pred             ccccchhhhhhhccccccccccccCCcceeecceeeeeeeEeccCCCCCCCccccccceeEEEeeccccchhhccCCCCC
Confidence            468999999999999999999765332   38999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCcccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q psy12707         79 VGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGV  158 (245)
Q Consensus        79 ~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~~  158 (245)
                      ||..|.+.+||++|+++|++||++||+.+++.++|..++++|.+|.-...++++.+.  ++.+++..||+.+|+.|..-+
T Consensus        92 PGt~V~V~VD~qkR~D~MQQHsGQHLitAvad~~fKlkTtSWelG~~~sa~e~~~~~--mTaeqvaaieqsvNe~I~d~~  169 (415)
T KOG2105|consen   92 PGTTVEVAVDEQKRMDYMQQHSGQHLITAVADHLFKLKTTSWELGRFRSAIELDTPS--MTAEQVAAIEQSVNEKIRDRL  169 (415)
T ss_pred             CCCeEEEEecHHHHhHHHHHhcchhHHHHHHHhhhccceeeeeccceeeccccCCCC--ccHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999877778888876  999999999999999999999


Q ss_pred             ceeEEEcCCCccccccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeeccccC-CCeEEEEEEEc
Q psy12707        159 KVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKS-KSLCIYLYLLG  237 (245)
Q Consensus       159 ~v~~~~~~~~ea~~~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~-~~~~Ri~~~~G  237 (245)
                      |+.+.+++.++.+.+....+.+|++..+.+|+|.|+|+|+++||||||+||++|+.|+|++.   +++ ++++...|..|
T Consensus       170 ~~~v~E~sl~d~eVeqVS~~~~~D~haG~iRvvnI~~vDSN~CCGTHvs~~Sdl~vI~ILgt---ekg~k~rtN~~f~~G  246 (415)
T KOG2105|consen  170 PVNVRELSLDDPEVEQVSGRGLPDDHAGPIRVVNIEGVDSNMCCGTHVSNLSDLQVIKILGT---EKGKKNRTNLIFLSG  246 (415)
T ss_pred             chheeecccCCcchhhccCCCCcccccCceEEEeecCccCCccccccccchhhcceEEEeec---cccccCccceEEEec
Confidence            99999999988877767777788888899999999999999999999999999999999999   877 77788999999


Q ss_pred             hhhhhh
Q psy12707        238 RRLMIQ  243 (245)
Q Consensus       238 ~~a~~~  243 (245)
                      +|++.|
T Consensus       247 nRV~~~  252 (415)
T KOG2105|consen  247 NRVLKW  252 (415)
T ss_pred             cHHHHH
Confidence            999887

>KOG0188|consensus

Probab=100.00  E-value=3.9e-41  Score=311.15  Aligned_cols=226  Identities=21%  Similarity=0.359  Sum_probs=190.7

Q ss_pred             ceeeeEEEEEEeCCC------CCceeEEEecCcccccCCCCCCCCeeEEc-------eEEEEEEEEeCCEEEEEEc--cc
Q psy12707         12 KEYKSKVVSCKRNET------RPTEYHVRMEDTIFFPTGGGQHCDKGTLG-------GVEVVDVYRDGDEAVHVVN--KE   76 (245)
Q Consensus        12 ~~~~a~v~~~~~~~~------~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i~-------~~~V~~v~~~~~~i~H~~~--~~   76 (245)
                      ..++++|+.+..++.      .++...|+||+|.||+|.|||.+|+|.|.       .++|..++. +|.|+|.+.  ++
T Consensus       470 ~~~~~~il~l~~e~~~v~~~~~g~~~givldktnFYaEqGGQ~~D~G~lv~~~~~~~~fnV~~~~~-gg~vvh~g~l~~~  548 (895)
T KOG0188|consen  470 GVCKTRILALYREDQFVESIPKGQECGIVLDKTNFYAEQGGQIYDTGKLVIDGDEDFVFNVKRVQV-GGYVVHIGVLEGD  548 (895)
T ss_pred             ccchhhhhhhhcCCceeeecCCCceEEEEeecceeehhcCCcccccceEEEecCccceeehhhccc-CCEEEEEeeeccc
Confidence            356677777764321      23588999999999999999999999995       244555554 799999874  57


Q ss_pred             cCCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHh-CCCcccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHH
Q psy12707         77 FQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMF-GYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIR  155 (245)
Q Consensus        77 ~~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~-g~~~~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~  155 (245)
                      +.+|++|.+.+|.+||..+|++|||+|||++||++++ +....+....|+.+++||+.... ++.++++.+|+.||++|.
T Consensus       549 l~vgdqv~~~~De~rR~~im~nHTaTHlLN~aLr~~l~~t~QkGSlV~pdklRfDf~~k~~-lt~eql~~vE~~~ne~I~  627 (895)
T KOG0188|consen  549 LSVGDQVELHVDEERRQLIMRNHTATHLLNFALRQVLKGTDQKGSLVAPDKLRFDFSTKGA-LTKEQLKKVEDKINEFIQ  627 (895)
T ss_pred             cccchhHHHHhhHHHHHHHhhcchHHHHHHHHHHHhcccccccccccChhHeeeecccCCC-CCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998 33334556678999999998877 999999999999999999


Q ss_pred             cCCceeEEEcCCCcc-ccccccccCCCCCCCCCeEEEEECC---ccccCCCCCccCCccCcccEEEEeeeccccCCCeEE
Q psy12707        156 QGVKVWASEYQPGDP-ALKTAHTRGLPKDHKGSIRIVHIDG---IDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCI  231 (245)
Q Consensus       156 ~~~~v~~~~~~~~ea-~~~~~~~~~~p~~~~~~vRiv~i~~---~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~R  231 (245)
                      ++.+|....++.++| +..+++.. +.|.|+++||||.+|.   +++++|||||+.|||+|+.|.|++.+  .-.+|.+|
T Consensus       628 ~~~~V~~~e~~l~~ak~i~glr~v-~~E~YPdpVRVVsvg~~~~~svE~CgGTH~~~t~~i~~fvI~se~--~iakgirR  704 (895)
T KOG0188|consen  628 KNAPVYAKELPLAEAKKIPGLRAV-FDEVYPDPVRVVSVGAGQLTSVEFCGGTHLTNTSHIGDFVIVSEE--GIAKGIRR  704 (895)
T ss_pred             cCCceEEEecCHHHHhcCCCcccc-cCCccCCceEEEEeccccccceeecCCcccccccccceEEEechh--hhhhceeE
Confidence            999999999999988 44544432 4567899999999974   67899999999999999999999982  44499999


Q ss_pred             EEEEEchhhhh
Q psy12707        232 YLYLLGRRLMI  242 (245)
Q Consensus       232 i~~~~G~~a~~  242 (245)
                      |..++|+.|.+
T Consensus       705 ivavTG~eA~~  715 (895)
T KOG0188|consen  705 IVAVTGKEAQE  715 (895)
T ss_pred             EEEeccHHHHH
Confidence            99999999864

>PRK01584 alanyl-tRNA synthetase; Provisional

Probab=99.96  E-value=3.7e-29  Score=234.03  Aligned_cols=142  Identities=22%  Similarity=0.357  Sum_probs=121.9

Q ss_pred             hhHHHHhhchHHHHHHHHHHHHhCCCc--ccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcCCceeEEEcCCC
Q psy12707         91 HRLDQTQQHTGQHLLSAVIDKMFGYDT--ESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPG  168 (245)
Q Consensus        91 ~R~~~~~~HTa~HlL~~al~~~~g~~~--~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~~~v~~~~~~~~  168 (245)
                      +|+.+|++|||+|||++|++++||..+  .+.+++++++|+||+.+.+ ++++++++||+.||++|++++||...+++++
T Consensus       449 ~g~~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~r~DF~~~~~-it~edL~~IE~~vNeiI~~n~pV~~~~~s~e  527 (594)
T PRK01584        449 HSYETTKLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEK-MTDDEIKKVEDIVNLQIKNDLSVKKEVMSLE  527 (594)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHcCccceeecCCcCCCcEEEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCCeEEEEcCHH
Confidence            466899999999999999999998753  3456778899999998765 9999999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeeccccCCCeEEEEEEE
Q psy12707        169 DPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYLL  236 (245)
Q Consensus       169 ea~~~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~Ri~~~~  236 (245)
                      +|+..... ..++++|.+.||||+|+++|.++||||||.||++||.|+|++.+  ++++|..||+++.
T Consensus       528 EA~~~~~~-~lf~e~y~~~VRVV~Igd~d~elCGGTHV~nTgeIG~fkI~s~~--s~g~GvrRI~av~  592 (594)
T PRK01584        528 EAREKGAM-ALFGEKYEDIVKVYEIDGFSKEVCGGPHVENTGELGTFKIQKEQ--SSSSGVRRIRAIL  592 (594)
T ss_pred             HHHhcchh-hhccccCCCcEEEEEECCeeeeCCCCCCCCCcccCceEEEEecc--cccCCeEEEEEEe
Confidence            98332111 12455678889999999999999999999999999999999983  5669999999875

>PLN02837 threonine-tRNA ligase

Probab=99.89  E-value=1.1e-22  Score=194.23  Aligned_cols=157  Identities=16%  Similarity=0.177  Sum_probs=126.1

Q ss_pred             CCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCc-ccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q psy12707         80 GELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDT-ESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGV  158 (245)
Q Consensus        80 g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~-~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~~  158 (245)
                      ...|.+..|...|...+.+|||+|||++|+.++||... ...+..++++|+||+.. . ++++++.+||++||++|.+|+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~~~g~y~D~~~~-~-lt~edl~~IEk~m~~iI~~n~  106 (614)
T PLN02837         29 PERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWIENGFYYDFDME-P-LTDKDLKRIKKEMDRIISRNL  106 (614)
T ss_pred             CceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCccCCCEEEEecCC-C-CCHHHHHHHHHHHHHHHHcCC
Confidence            36899999999999999999999999999999997532 22233457899999973 4 999999999999999999999


Q ss_pred             ceeEEEcCCCccccc------cccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCc--ccEEEEeeec-----ccc
Q psy12707        159 KVWASEYQPGDPALK------TAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQL--QSIKLLKTTR-----AQK  225 (245)
Q Consensus       159 ~v~~~~~~~~ea~~~------~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI--~~~kI~~~~~-----~~~  225 (245)
                      ||+..++++++|...      ..+...++....+.||+|+|||...++|+||||+|||+|  +.|+|++++.     +++
T Consensus       107 pI~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~~~~~Iriy~ig~~~~D~c~GpHv~sTg~I~~~~~kl~~~~g~ywrg~~~  186 (614)
T PLN02837        107 PLVREEVSREEAQKRIMAINEPYKLEILEGIKEEPITIYHIGEEWWDLCAGPHVERTGKINKKAVELESVAGAYWRGDEK  186 (614)
T ss_pred             CEEEEEecHHHHHHHHHHcCCchhHHHhccCCCCeEEEEEECCeEEEecCCCCcccccccccceEEEEEeehhhhccccc
Confidence            999999999998321      011111121113569999999844788999999999999  9999999973     566


Q ss_pred             CCCeEEEEEEEch
Q psy12707        226 SKSLCIYLYLLGR  238 (245)
Q Consensus       226 ~~~~~Ri~~~~G~  238 (245)
                      ...++||++++=.
T Consensus       187 ~~~l~ri~g~~~~  199 (614)
T PLN02837        187 NQMLQRIYGTAWE  199 (614)
T ss_pred             CcceEEEEEEecC
Confidence            6889999998743

>PRK12305 thrS threonyl-tRNA synthetase; Reviewed

Probab=99.87  E-value=1.1e-21  Score=186.65  Aligned_cols=144  Identities=16%  Similarity=0.182  Sum_probs=113.9

Q ss_pred             HHHhhchHHHHHHHHHHHHhCCC-cccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcCCceeEEEcCCCcc-c
Q psy12707         94 DQTQQHTGQHLLSAVIDKMFGYD-TESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDP-A  171 (245)
Q Consensus        94 ~~~~~HTa~HlL~~al~~~~g~~-~~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~~~v~~~~~~~~ea-~  171 (245)
                      ..+.+|||+|||++|+.++||.. ....+..++++|+||+.+.. ++++++.+||+.||++|++++||....+++++| +
T Consensus         6 ~~~~~hS~~hlL~~A~~~~~~~~~~~~~~~~~~g~~~d~~~~~~-it~e~l~~Ie~~m~~lI~~~~pi~~~~v~~eeA~~   84 (575)
T PRK12305          6 LEVIRHSAAHVLAQAVQELFPDAKLGIGPPIEDGFYYDFDVPEP-FTPEDLKKIEKKMKKIIKRGLPFEREEVSREEARE   84 (575)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCceEEeCCCcCCeEEEEeeCCCC-CCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHH
Confidence            34789999999999999999743 22334456889999998655 999999999999999999999999999999998 3


Q ss_pred             ccc---ccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeec-----cccCCCeEEEEEEEchh
Q psy12707        172 LKT---AHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTR-----AQKSKSLCIYLYLLGRR  239 (245)
Q Consensus       172 ~~~---~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~-----~~~~~~~~Ri~~~~G~~  239 (245)
                      ...   .+...+.....+.||+|+||++ .++|+||||+|||+||.|+|++++.     ++++++++||++++=..
T Consensus        85 ~f~~~~~k~~l~~~~~~~~vri~~ig~~-~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~~l~Ri~g~~~~~  159 (575)
T PRK12305         85 EFANEPYKLELIDDIPEEGITIYDNGDF-EDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNPQLQRIYGTAWET  159 (575)
T ss_pred             hCCcChhHHHhhhhcCCCeEEEEEECCE-EEECCCCCCCCccCCceeEEEEEcceEECCCCCCcceEEEEEEecCC
Confidence            211   1110011111346999999997 5889999999999999999999852     56779999999987443

>PRK00413 thrS threonyl-tRNA synthetase; Reviewed

Probab=99.84  E-value=2.2e-20  Score=179.80  Aligned_cols=170  Identities=16%  Similarity=0.206  Sum_probs=132.8

Q ss_pred             CCEEEEEEccccCCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCC-cccccccCCceEEeeeCCCCCCCHHHHH
Q psy12707         66 GDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYD-TESWNCGSDVCDVELATKDKDLTEADIA  144 (245)
Q Consensus        66 ~~~i~H~~~~~~~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~-~~~~~~~~~~~~id~~~~~~~l~~~~l~  144 (245)
                      +|.++ -+..++..+..|+..-....+-..+.+|||+|||+.|+.++||.. ....+..++++|+||+.+.. ++++++.
T Consensus        41 ng~l~-dL~~~l~~d~~Vefi~~~~~~g~~~y~hS~~hll~~A~~~~~~~~~~~~~~~~~~g~y~d~~~~~~-lt~e~l~  118 (638)
T PRK00413         41 NGELV-DLSTPIEEDASLEIITAKDEEGLEIIRHSAAHLLAQAVKRLYPDAKLTIGPVIENGFYYDFDRERP-FTPEDLE  118 (638)
T ss_pred             CCEEe-eCCccccCCCceeeeeccchhhHHHHhhhHHHHHHHHHHHHcCCceEEECCccCCeEEEEEeCCCC-CCHHHHH
Confidence            44432 233456667889988888888899999999999999999999742 22223346789999997655 9999999


Q ss_pred             HHHHHHHHHHHcCCceeEEEcCCCcc-ccccc-----ccc---CCCCCCCCCeEEEEECCccccCCCCCccCCccCcccE
Q psy12707        145 AIEQECNNKIRQGVKVWASEYQPGDP-ALKTA-----HTR---GLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSI  215 (245)
Q Consensus       145 ~iE~~~n~~I~~~~~v~~~~~~~~ea-~~~~~-----~~~---~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~  215 (245)
                      +||+.||++|++|+||....+++++| ++..-     +..   ..|.  .+.+|+|+++++ .++|+||||+|||+|+.|
T Consensus       119 ~Ie~~m~~iI~~~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll~~~~~--~~~v~iy~~~~~-~d~c~G~hv~~Tg~i~~f  195 (638)
T PRK00413        119 AIEKEMKEIIKENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPE--DEEISLYRQGEF-VDLCRGPHVPSTGKIKAF  195 (638)
T ss_pred             HHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCCccHHHHhhcCCC--CCeEEEEEECCE-EEECCCCCCCcccCCcee
Confidence            99999999999999999999999998 32110     000   1121  237999999997 689999999999999999


Q ss_pred             EEEeeec-----cccCCCeEEEEEEEchhh
Q psy12707        216 KLLKTTR-----AQKSKSLCIYLYLLGRRL  240 (245)
Q Consensus       216 kI~~~~~-----~~~~~~~~Ri~~~~G~~a  240 (245)
                      +|.+.+.     ++++++++||++++=...
T Consensus       196 ~i~~~~~g~~l~~~~~~~l~Ri~g~~~~~~  225 (638)
T PRK00413        196 KLLKVAGAYWRGDSKNKMLQRIYGTAFADK  225 (638)
T ss_pred             EEEEEcceEEcCCCcchheEEEEeeecCCH
Confidence            9999852     566799999999875543

>PRK12444 threonyl-tRNA synthetase; Reviewed

Probab=99.82  E-value=2.5e-19  Score=172.34  Aligned_cols=159  Identities=13%  Similarity=0.203  Sum_probs=120.7

Q ss_pred             cccCCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCccc-ccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHH
Q psy12707         75 KEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTES-WNCGSDVCDVELATKDKDLTEADIAAIEQECNNK  153 (245)
Q Consensus        75 ~~~~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~~~-~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~  153 (245)
                      .++..+..|+..--...--..+.+||++|||+.|+.++||..... .+..++++|+||+.... ++++++.+||+.||++
T Consensus        53 ~~i~~d~~i~fv~~~~~~g~~iy~hS~~hlL~~A~~~~~~~~~~~i~~~~~~g~y~d~~~~~~-it~edl~~Ie~~m~ei  131 (639)
T PRK12444         53 RNLEEDAEVEIITIDSNEGVEIARHSAAHILAQAVKRLYGDVNLGVGPVIENGFYYDMDLPSS-VNVEDLRKIEKEMKKI  131 (639)
T ss_pred             cccCCCCeEEEecCCChHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCCcCCCeEEEEEeCCCC-CCHHHHHHHHHHHHHH
Confidence            345545555544323333446789999999999999999863221 23346789999998755 9999999999999999


Q ss_pred             HHcCCceeEEEcCCCcc-cccc-----cc--c-cCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeec--
Q psy12707        154 IRQGVKVWASEYQPGDP-ALKT-----AH--T-RGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTR--  222 (245)
Q Consensus       154 I~~~~~v~~~~~~~~ea-~~~~-----~~--~-~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~--  222 (245)
                      |.+++||....+++++| ++..     .+  . ...|.  ...||+|+|+++ .+.|+||||+|||+|+.|+|++.+.  
T Consensus       132 I~~~~pI~~~~v~~eeA~~~F~~~~~~~K~~ll~~~~~--~~~v~iy~~~~~-~D~c~G~hv~sTg~ik~f~l~~~~~g~  208 (639)
T PRK12444        132 INENIKIERVEVSREEAAKLFQEMNDRLKLELLEAIPS--GESITLYKQGEF-VDLCRGPHLPSTGYLKAFQLTHVSGAY  208 (639)
T ss_pred             HhcCCCEEEEEecHHHHHHHHhhcCCchHHHHHhcCCC--CCeEEEEEECCE-EEEcCCcCCCCCCCCceeEEEEEcceE
Confidence            99999999999999998 3211     11  0 01121  246999999996 6889999999999999999999863  


Q ss_pred             ---cccCCCeEEEEEEEc
Q psy12707        223 ---AQKSKSLCIYLYLLG  237 (245)
Q Consensus       223 ---~~~~~~~~Ri~~~~G  237 (245)
                         ++++++++||+++|=
T Consensus       209 ~~g~~~~~~l~Ri~g~a~  226 (639)
T PRK12444        209 WRGDSNNQVLQRIYGVAF  226 (639)
T ss_pred             EcCCCCCcceEEEEEEec
Confidence               566689999999873

>PLN02908 threonyl-tRNA synthetase

Probab=99.80  E-value=1.5e-18  Score=167.78  Aligned_cols=170  Identities=15%  Similarity=0.151  Sum_probs=124.6

Q ss_pred             eCCEEEEEEccccCCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCcc-cccccC-CceEEeeeCCCCCCCHHH
Q psy12707         65 DGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTE-SWNCGS-DVCDVELATKDKDLTEAD  142 (245)
Q Consensus        65 ~~~~i~H~~~~~~~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~~-~~~~~~-~~~~id~~~~~~~l~~~~  142 (245)
                      .+|.+|- +..++..+.+|++.=-....-.-+.+||++|||..|++++||.... +.++++ +++|+||......+++++
T Consensus        91 Vng~l~d-L~~~l~~d~~le~l~~~~~eg~~~y~hS~ahlL~~A~~~~~~~~l~ig~~i~~~~Gfy~d~~~~~~~~t~ed  169 (686)
T PLN02908         91 VDGVLWD-MTRPLEGDCKLKLFKFDDDEGRDTFWHSSAHILGEALELEYGCKLCIGPCTTRGEGFYYDAFYGDRTLNEED  169 (686)
T ss_pred             ECCEEee-cCccccCCCeeEEeccccHHHHHHHHHHHHHHHHHHHHHHhCCeEEecCccccCCcEEEEeecCCCCCCHHH
Confidence            4565543 2334554445554322223455688999999999999999976433 334444 688999885422299999


Q ss_pred             HHHHHHHHHHHHHcCCceeEEEcCCCcc-ccc---cccc---cCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccE
Q psy12707        143 IAAIEQECNNKIRQGVKVWASEYQPGDP-ALK---TAHT---RGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSI  215 (245)
Q Consensus       143 l~~iE~~~n~~I~~~~~v~~~~~~~~ea-~~~---~~~~---~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~  215 (245)
                      +..||+.|+++|++++||+...+++++| ++.   .++.   ..+|+  ...+++++||++ .+.|.||||+|||+|+.|
T Consensus       170 l~~Ie~~m~~iI~~~~pi~r~~v~~eeA~e~F~~~~~K~~ll~~~~~--~~~v~vY~~g~~-~D~c~Gphv~sTg~ik~f  246 (686)
T PLN02908        170 FKPIEARAEKAVKEKQPFERIEVTREEALEMFSENKFKVEIINDLPE--DATITVYRCGPL-VDLCRGPHIPNTSFVKAF  246 (686)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHhhCCcHHHHHhhCCC--CCeeEEEEECCE-EEecCCCCCCCCCcccee
Confidence            9999999999999999999999999998 321   1111   11332  246999999997 688999999999999999


Q ss_pred             EEEeeec-----cccCCCeEEEEEEEch
Q psy12707        216 KLLKTTR-----AQKSKSLCIYLYLLGR  238 (245)
Q Consensus       216 kI~~~~~-----~~~~~~~~Ri~~~~G~  238 (245)
                      +|++++.     +.+...++||++++=+
T Consensus       247 ~l~~~~~~~~lg~~~~~~lqRi~G~sfp  274 (686)
T PLN02908        247 ACLKASSAYWRGDVDRESLQRVYGISFP  274 (686)
T ss_pred             EEEEecceEEcCCCcchhhEEEeeeccC
Confidence            9999862     4455789999998743

>TIGR00418 thrS threonyl-tRNA synthetase

Probab=99.71  E-value=4.7e-17  Score=154.68  Aligned_cols=138  Identities=16%  Similarity=0.111  Sum_probs=108.8

Q ss_pred             hchHHHHHHHHHHHHhCCC-cccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcCCceeEEEcCCCcc-ccccc
Q psy12707         98 QHTGQHLLSAVIDKMFGYD-TESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDP-ALKTA  175 (245)
Q Consensus        98 ~HTa~HlL~~al~~~~g~~-~~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~~~v~~~~~~~~ea-~~~~~  175 (245)
                      +|||+|||.+|++++|+.. ....+.-++++|+||+.... ++++++.+||+.||++|.+++|+....+++++| +... 
T Consensus         1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i~~g~~~df~~~~~-~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f~-   78 (563)
T TIGR00418         1 RHSIAHLLAEALKQLYPDVKLAIGPVVEDGFYYDFELDRS-FTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAFK-   78 (563)
T ss_pred             CChHHHHHHHHHHHHcCCcEEEEcCCcCCCceecccCCCC-CCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHHh-
Confidence            6999999999999998743 22223335679999987655 999999999999999999999999999999998 3222 


Q ss_pred             cccC-----CCCC-CCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeec-----cccCCCeEEEEEEEc
Q psy12707        176 HTRG-----LPKD-HKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTR-----AQKSKSLCIYLYLLG  237 (245)
Q Consensus       176 ~~~~-----~p~~-~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~-----~~~~~~~~Ri~~~~G  237 (245)
                      ....     +... ....|+++.++++..+.|.||||+|||.|+.|+|.+...     .+++..++||++++=
T Consensus        79 ~~~~~k~~Ll~~~~~~~~v~vy~~g~~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~l~Ri~g~~~  151 (563)
T TIGR00418        79 VLEPYKLELLDEIPNGVKRTPYGWGKAFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKMLQRIYGTAW  151 (563)
T ss_pred             ccChhHHHHHhcCCCCCeEEEEEeCCEEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCceEeeeeccC
Confidence            1110     1111 346799999999448999999999999999999998852     455578999999763

This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..

>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=2.6e-16  Score=147.82  Aligned_cols=141  Identities=14%  Similarity=0.153  Sum_probs=113.9

Q ss_pred             hHHHHhhchHHHHHHHHHHHHhCCCcccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcCCceeEEEcCCCcc-
Q psy12707         92 RLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDP-  170 (245)
Q Consensus        92 R~~~~~~HTa~HlL~~al~~~~g~~~~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~~~v~~~~~~~~ea-  170 (245)
                      ...-..+||++|+|+.|++++|+....+ ..-+++||+||+...+ |+++++..||+.|++++.+++++....+++++| 
T Consensus        24 ~~~~~~rhs~ah~l~~av~~l~p~~~~g-p~ie~gfyyd~~~~~~-~~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~  101 (589)
T COG0441          24 EGLEIIRHSCAHVLAQAVKRLYPDVTIG-PVIEEGFYYDFDVKEP-ITPEDLLKIEKEMKEIAKENLPIEREVVSREEAR  101 (589)
T ss_pred             cchhhhhhHHHHHHHHHHHHhCCCcccc-CcccceeEEeeccCCC-CCHHHHHHHHHHHHHHHHhcCceEEEEecHHHHH
Confidence            5556779999999999999999873222 3445799999999877 999999999999999999999999999999888 


Q ss_pred             cccc-ccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeec-----cccCCCeEEEEEEEc
Q psy12707        171 ALKT-AHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTR-----AQKSKSLCIYLYLLG  237 (245)
Q Consensus       171 ~~~~-~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~-----~~~~~~~~Ri~~~~G  237 (245)
                      +... ++...+.. .+..+.+++-+.+ .++|-||||+||+.| .|++++++.     +++++.++||++++=
T Consensus       102 ~~f~~yK~~~i~~-~~~~~s~y~~~~~-~dlc~gph~~~t~~i-~fkl~~~~~ayw~g~~~~~~l~riygta~  171 (589)
T COG0441         102 APFGPYKAELIDC-KGHPLSEYSQGEF-VDLCRGPHVPSTGKI-AFKLLKLAGAYWRGDENNEMLQRIYGTAF  171 (589)
T ss_pred             HHhhhhHHHHHhc-CCCCceeEecCcc-ccccCCCCCCccceE-EEEEEEecchhhccCCCCcceeEEecccc
Confidence            3221 12111111 1367888988887 899999999999999 999999973     577789999999875

>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer

Probab=99.64  E-value=2.3e-16  Score=99.12  Aligned_cols=44  Identities=36%  Similarity=0.614  Sum_probs=36.5

Q ss_pred             eEEEEECCccccCCCCCccCCccCcccEEEEeeeccccCCCeEEEE
Q psy12707        188 IRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYL  233 (245)
Q Consensus       188 vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~Ri~  233 (245)
                      ||+|+|++++.++||||||+||++|+.|+|++.  ++++++.+|||
T Consensus         1 vRvv~i~~~~~~~C~GtHv~~T~~i~~~~i~~~--~~~~~~~~RI~   44 (44)
T PF07973_consen    1 VRVVRIGDFDVDLCGGTHVPNTGEIGHFKILKG--ESKGKGLRRIY   44 (44)
T ss_dssp             EEEEEETTTEEEEESS---SBGGGG-CEEEEEE--EEEETTEEEEE
T ss_pred             CEEEEECCeeEECCCCcccCChhEECcEEEEEe--EEEcCCcEEeC
Confidence            799999999999999999999999999999977  25679999997

Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....

>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6

Probab=99.62  E-value=1.5e-15  Score=143.23  Aligned_cols=62  Identities=35%  Similarity=0.633  Sum_probs=47.7

Q ss_pred             eeEEEecCcccccCCCCCCCCeeEEc----eEEEEEEEEeCCEEEEEEcc---ccCCCCEEEEEEchhh
Q psy12707         30 EYHVRMEDTIFFPTGGGQHCDKGTLG----GVEVVDVYRDGDEAVHVVNK---EFQVGELLDMKIDWAH   91 (245)
Q Consensus        30 ~~~i~ld~T~Fyp~gGGQ~~D~G~i~----~~~V~~v~~~~~~i~H~~~~---~~~~g~~v~~~iD~~~   91 (245)
                      ..+|+||+|+|||+|||||+|+|+|.    .+.|.+|++.+|.++|++..   .+.+|++|.++|||+|
T Consensus       484 ~~~VVLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~~~~g~l~~G~~V~~~VD~eR  552 (552)
T PF01411_consen  484 EGYVVLDKTPFYPEGGGQPGDTGTIIGDGGEFEVTDVQKVGGVILHIGEVESGSLKVGDEVTAEVDWER  552 (552)
T ss_dssp             TTEEEESEE-S--SBTTB----EEECCTTEEEEEEEEEEETTEEEEEESSG-GG--TTSEEEEEE-HHH
T ss_pred             eEEEEECCccccCCCCCCCCCeEEEeecceEEEEEEEEEECCEEEEEEeccCCCCCCCCEEEEEecCCC
Confidence            56899999999999999999999996    48999999999999999964   5999999999999987

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....

>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain

Probab=99.47  E-value=4.9e-14  Score=88.66  Aligned_cols=44  Identities=30%  Similarity=0.499  Sum_probs=38.5

Q ss_pred             eEEEEECCccccCCCCCccCCccCcccEEEEeeeccccCCCeEEEE
Q psy12707        188 IRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYL  233 (245)
Q Consensus       188 vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~Ri~  233 (245)
                      +|+|.|+++|.+||+||||.||++||.|+|++.+  .++.+++||+
T Consensus         1 vriv~i~~~~~~~C~GtHv~~t~~I~~i~i~~~~--~~~~~~~Ri~   44 (44)
T smart00863        1 VRVVSIGDFDVELCGGTHVPNTGEIGAFKILSVS--GAYWGLQRIY   44 (44)
T ss_pred             CEEEEECCEEEECCCCcccCChhhCcEEEEEEEe--eeecCeEEeC
Confidence            5899999999999999999999999999999993  3346678874

The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.

>PRK14799 thrS threonyl-tRNA synthetase; Provisional

Probab=98.42  E-value=1.8e-06  Score=81.75  Aligned_cols=94  Identities=9%  Similarity=0.094  Sum_probs=65.6

Q ss_pred             CCCcccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcCCceeEEEcCCCccccccccccCCCCCCCCCeEEEEE
Q psy12707        114 GYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHI  193 (245)
Q Consensus       114 g~~~~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~p~~~~~~vRiv~i  193 (245)
                      |......+.|+..||+|...+.. ++.++..+       +...| |.....++                  .+.  ++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~~-~~~~~~~~------------------~~~--~~~~   73 (545)
T PRK14799         23 GYKPVAVGLGERDFYIDVKSDTS-ITLDEVKK-------AINEN-VLANVSIE------------------NNQ--IVYK   73 (545)
T ss_pred             CCCceEecccceeEEEecCCCcc-ccHHHHHH-------HHhcC-cceeeEee------------------cCc--EEEc
Confidence            44334556788899999998776 77654333       33333 22222211                  122  3346


Q ss_pred             CCccccCCCC-CccCCccCcccEEEEeeec--cccCCCeEEEEEEEc
Q psy12707        194 DGIDNNMCCG-THVDNISQLQSIKLLKTTR--AQKSKSLCIYLYLLG  237 (245)
Q Consensus       194 ~~~~~~~CgG-tHV~~T~eI~~~kI~~~~~--~~~~~~~~Ri~~~~G  237 (245)
                      |.+ +++|.| |||+||+.|+.|++++++.  ++++..++|||+++=
T Consensus        74 ~~~-~~~~~~~ph~~~t~~~~~fkl~~~~~~g~~~~~~l~Riyg~~f  119 (545)
T PRK14799         74 GNK-VSIIEDKVSISTNLNPKYFEILNISTHHPNPNEQYVRIRGVAF  119 (545)
T ss_pred             cCc-eeecCCCCCCCCCCCcceEEEEEeccCCCccCceeEEEEEeec
Confidence            666 899999 9999999999999999975  667789999999873

>KOG1637|consensus

Probab=97.69  E-value=1.5e-05  Score=72.48  Aligned_cols=36  Identities=11%  Similarity=0.108  Sum_probs=30.4

Q ss_pred             HhhchHHHHHHHHHHHHhCCCcccccccCCceEEee
Q psy12707         96 TQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVEL  131 (245)
Q Consensus        96 ~~~HTa~HlL~~al~~~~g~~~~~~~~~~~~~~id~  131 (245)
                      ..|||++|+|..|+++.+|+..+-.+...++||+|+
T Consensus        68 vfwhssahvlg~a~e~~~g~~lc~Gpp~~~gf~yd~  103 (560)
T KOG1637|consen   68 VFWHSSAHVLGEALEQEYGAHLCIGPPIEEGFYYDM  103 (560)
T ss_pred             eeeehhhhHhhHHHHHhcCeeEeeCCCCcCceehhh
Confidence            579999999999999999987665555567899988

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	245
3kew_A	241	Crystal Structure Of Probable Alanyl-Trna-Synthase		3e-27
2e1b_A	216	Crystal Structure Of The Alax-M Trans-Editing Enzym		9e-20
2zzf_A	752	Crystal Structure Of Alanyl-Trna Synthetase Without		4e-15
2zze_A	752	Crystal Structure Of Alanyl-Trna Synthetase Without		1e-07
2ztg_A	739	Crystal Structure Of Archaeoglobus Fulgidus Alanyl-		6e-06

>pdb|3KEW|A Chain A, Crystal Structure Of Probable Alanyl-Trna-Synthase From Clostridium Perfringens Length = 241

Iteration: 1
 Score =  118 bits (296), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/230 (36%), Positives = 123/230 (53%), Gaps = 13/230 (5%)
Query: 11  LKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVVDVYRDGDEAV 70
           +KE+K +++  K  + +   +HV ++ T FFP GGGQ  D G + G++V+DVY +  +  
Sbjct: 13  IKEFKGEIIEVKEIDGK---FHVLLDQTAFFPGGGGQMGDLGLIDGIKVLDVYEEEGKVY 69
Query: 71  HVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVE 130
           HV+ KE +  + L  ++DW  R D  QQH GQHLLS     +FG +T  ++ G ++  V+
Sbjct: 70  HVLEKEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANTCGFHLGKEISTVD 129
Query: 131 LATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKTAHT-RGLPKDHKGSIR 189
           +      L E  I   E+E N  I + ++V    Y P    LK   T R LPK  +  IR
Sbjct: 130 IVG---FLDEKTIREAEKEANRLIFENLEV--KSYAPSKKELKKVKTRRALPKTDE-EIR 183
Query: 190 IVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYLLGRR 239
           IV I G+D N CCG H  N   LQ IK+    R +K K+     Y+ G R
Sbjct: 184 IVEIVGLDLNACCGVHPRNTRDLQVIKI---RRWEKHKNATRIEYVAGNR 230

>pdb|2E1B|A Chain A, Crystal Structure Of The Alax-M Trans-Editing Enzyme From Pyrococcus Horikoshii Length = 216

Iteration: 1
 Score = 93.6 bits (231), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 110/232 (47%), Gaps = 39/232 (16%)
Query: 4   LCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVVDVY 63
           L   +  LKE K +V+  + N        + ++ TIF+PTGGGQ  D+GT+ GVEV+DVY
Sbjct: 8   LYYEDAYLKEAKGRVLEIRDNA-------ILLDQTIFYPTGGGQPHDRGTINGVEVLDVY 60
Query: 64  RDGDEAV-HVVN--KEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESW 120
           +D +  V HVV   ++F+VG+ +++KIDW +R    + HTG HLL  V++++ G    +W
Sbjct: 61  KDEEGNVWHVVKEPEKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLG--EGNW 118
Query: 121 NCGSDVCDVELATKDKDLTEADIAAIEQEC---NNKIRQG--VKVWASEYQPGDPALKTA 175
                   VE    D    E      EQ     N  + +G  VK+W              
Sbjct: 119 QLVGSGMSVEKGRYDIAYPENLNKYKEQIISLFNKYVDEGGEVKIWW------------- 165
Query: 176 HTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSK 227
                    +G  R   I   +   C GTHV +I ++  IK LK +   + K
Sbjct: 166 ---------EGDRRYTQIRDFEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGK 208

>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain Length = 752

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 33/239 (13%)
Query: 11  LKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTL----GGVEVVDVYRDG 66
           +KE+ +KV+       R  +  V ++ T F+P GGGQ  D G L      V+V +V + G
Sbjct: 526 MKEFDAKVL-------RVIKDWVILDATAFYPEGGGQPYDTGVLIVNGREVKVTNVQKVG 578
Query: 67  DEAVHVVNK--EFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGS 124
              +H V     F+ G ++  KIDW  R+   + HTG H+L   + ++ G     W  GS
Sbjct: 579 KVIIHKVEDPGAFKEGMIVHGKIDWKRRIQHMRHHTGTHVLMGALVRVLG--RHVWQAGS 636
Query: 125 DVCDVELATKD----KDLTEADIAAIEQECNNKIRQGVKV-WASEYQPGDPALKTAHTRG 179
            +   + A  D    K ++E ++  IE   N  + +  KV W  E+ P      TA  + 
Sbjct: 637 QLT-TDWARLDISHYKRISEEELKEIEMLANRIVMEDRKVTW--EWLP----RTTAEQKY 689
Query: 180 LPKDHKG------SIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIY 232
             + ++G       IR+V I+  D   C GTH+ +   +  IK+L+T R Q      I+
Sbjct: 690 GFRLYQGGVVPGREIRVVKIEDWDVQACGGTHLPSTGLVGPIKILRTERIQDGVERIIF 748

>pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain In Lysine-Methylated Form Length = 752

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 88/220 (40%), Gaps = 32/220 (14%)
Query: 33  VRMEDTIFFPTGGGQHCDKGTL----GGVEVVDVYRDGDEAVHVVNK--EFQVGELLDMK 86
           V ++ T F+P GGGQ  D G L      V V +V   G   +H V     F  G ++   
Sbjct: 541 VILDATAFYPEGGGQPYDTGVLIVNGREVXVTNVQXVGXVIIHXVEDPGAFXEGMIVHGX 600
Query: 87  IDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAI 146
           IDW  R+   + HTG H+L   + ++ G     W  GS     +L T   D    DI+  
Sbjct: 601 IDWXRRIQHMRHHTGTHVLMGALVRVLG--RHVWQAGS-----QLTT---DWARLDISHY 650
Query: 147 EQ----------ECNNKIRQGVKVWASEYQPGDPALKTAHTR----GLPKDHKGSIRIVH 192
            +             N+I    +    E+ P   A +    R    G+    +  IR+V 
Sbjct: 651 XRISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGGVVPGRE--IRVVX 708
Query: 193 IDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIY 232
           I+  D     GTH+ +   +  I +L+T R Q      I+
Sbjct: 709 IEDWDVQAXGGTHLPSTGLVGPIXILRTERIQDGVERIIF 748

>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking The C-Terminal Dimerization Domain In Complex With Ala-Sa Length = 739

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 29/229 (12%)
Query: 10  SLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTL----GGVEVVDVYRD 65
           +L E++++V+  + +        V +  + F+P  GGQ  D G L    G  EVVDV   
Sbjct: 513 TLLEFEAEVIGVEGD-------FVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEA 565
Query: 66  GDEAVHVVN-KEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGS 124
               +HVV   + +VG  +   ID   R    + H+  H+L   + K+ G     W  G+
Sbjct: 566 DGVVLHVVKGAKPEVGTKVKGVIDSDVRWRHXRHHSATHVLLYSLQKVLG--NHVWQAGA 623
Query: 125 ---------DVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKTA 175
                    DV      ++++      +A  E   N  I+     W    +         
Sbjct: 624 RKEFSKARLDVTHFRRPSEEEIKEIEXLANREILANKPIKWE---WXDRIEAERKFGFRL 680
Query: 176 HTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQ 224
           +  G+P   K  IR+V + G D   C GTH  +  ++  +K+LK    Q
Sbjct: 681 YQGGVPPGRK--IRVVQV-GDDVQACGGTHCRSTGEIGXLKILKVESIQ 726

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	245
3kew_A	241	DHHA1 domain protein; structural genomics, PSI-2,	1e-68
2e1b_A	216	PH0108, 216AA long hypothetical alanyl-tRNA synthe	1e-27
2ztg_A	739	Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy	8e-22
2zze_A	752	Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML	6e-18
1v4p_A	157	Alanyl-tRNA synthetase; alanine-tRNA ligase, riken	4e-09

>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Length = 241

 Score =  210 bits (537), Expect = 1e-68
 Identities = 76/225 (33%), Positives = 116/225 (51%), Gaps = 8/225 (3%)

Query: 1   MVFLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVV 60
           +  L   +  +KE+K +++  K  +    ++HV ++ T FFP GGGQ  D G + G++V+
Sbjct: 3   LTKLYYEDQYIKEFKGEIIEVKEIDG---KFHVLLDQTAFFPGGGGQMGDLGLIDGIKVL 59

Query: 61  DVYRDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESW 120
           DVY +  +  HV+ KE +  + L  ++DW  R D  QQH GQHLLS     +FG +T  +
Sbjct: 60  DVYEEEGKVYHVLEKEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANTCGF 119

Query: 121 NCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKTAHTRGL 180
           + G ++  V++      L E  I   E+E N  I + ++V    Y P    LK   TR  
Sbjct: 120 HLGKEISTVDI---VGFLDEKTIREAEKEANRLIFENLEV--KSYAPSKKELKKVKTRRA 174

Query: 181 PKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQK 225
                  IRIV I G+D N CCG H  N   LQ IK+ +  + + 
Sbjct: 175 LPKTDEEIRIVEIVGLDLNACCGVHPRNTRDLQVIKIRRWEKHKN 219

>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Length = 216

 Score =  104 bits (261), Expect = 1e-27
 Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 37/227 (16%)

Query: 3   FLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVVDV 62
            L   +  LKE K +V+  + N        + ++ TIF+PTGGGQ  D+GT+ GVEV+DV
Sbjct: 7   KLYYEDAYLKEAKGRVLEIRDNA-------ILLDQTIFYPTGGGQPHDRGTINGVEVLDV 59

Query: 63  YRDGDEAVH---VVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTES 119
           Y+D +  V       ++F+VG+ +++KIDW +R    + HTG HLL  V++++ G     
Sbjct: 60  YKDEEGNVWHVVKEPEKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQ 119

Query: 120 WNCGSDVCDVELA----TKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPALKTA 175
              GS +  VE         ++L +     I    N  + +G +V    ++         
Sbjct: 120 LV-GSGM-SVEKGRYDIAYPENLNK-YKEQIISLFNKYVDEGGEV-KIWWE--------- 166

Query: 176 HTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTR 222
                     G  R   I   +   C GTHV +I ++  IK LK + 
Sbjct: 167 ----------GDRRYTQIRDFEVIPCGGTHVKDIKEIGHIKKLKRSS 203

>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739

 Score = 92.7 bits (231), Expect = 8e-22
 Identities = 55/210 (26%), Positives = 80/210 (38%), Gaps = 40/210 (19%)

Query: 38  TIFFPTGGGQHCDKGTL----GGVEVVDVYRDGDEAVHVVNK-EFQVGELLDMKIDWAHR 92
           + F+P  GGQ  D G L    G  EVVDV       +HVV   + +VG  +   ID   R
Sbjct: 534 SAFYPESGGQDNDVGYLIANGGKFEVVDVLEADGVVLHVVKGAKPEVGTKVKGVIDSDVR 593

Query: 93  LDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELA----TKDKDLTEADIAAIEQ 148
               + H+  H+L   + K+ G     W  G+   +   A    T  +  +E +I  IE 
Sbjct: 594 WRHMRHHSATHVLLYSLQKVLG--NHVWQAGARK-EFSKARLDVTHFRRPSEEEIKEIEM 650

Query: 149 ECNNKIRQGVKVWASE--------------YQPGDPALKTAHTRGLPKDHKGSIRIVHID 194
             N +I     +                  YQ G P          P      IR+V + 
Sbjct: 651 LANREILANKPIKWEWMDRIEAERKFGFRLYQGGVP----------PGR---KIRVVQV- 696

Query: 195 GIDNNMCCGTHVDNISQLQSIKLLKTTRAQ 224
           G D   C GTH  +  ++  +K+LK    Q
Sbjct: 697 GDDVQACGGTHCRSTGEIGMLKILKVESIQ 726

>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752

 Score = 81.7 bits (200), Expect = 6e-18
 Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 14/203 (6%)

Query: 33  VRMEDTIFFPTGGGQHCDKGTL----GGVEVVDVYRDGDEAVH--VVNKEFQVGELLDMK 86
           V ++ T F+P GGGQ  D G L      V V +V   G   +H       F  G ++   
Sbjct: 541 VILDATAFYPEGGGQPYDTGVLIVNGREVXVTNVQXVGXVIIHXVEDPGAFXEGMIVHGX 600

Query: 87  IDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELA---TKDKDLTEADI 143
           IDW  R+   + HTG H+L   + ++ G     W  GS +         +    ++E ++
Sbjct: 601 IDWXRRIQHMRHHTGTHVLMGALVRVLG--RHVWQAGSQLTTDWARLDISHYXRISEEEL 658

Query: 144 AAIEQECNNKIRQGVKVWASEYQPGDPALKTAHTRGLPKDHK--GSIRIVHIDGIDNNMC 201
             IE   N  + +   V   E+ P   A +    R           IR+V I+  D   C
Sbjct: 659 XEIEMLANRIVMEDRXV-TWEWLPRTTAEQXYGFRLYQGGVVPGREIRVVXIEDWDVQAC 717

Query: 202 CGTHVDNISQLQSIKLLKTTRAQ 224
            GTH+ +   +  I +L+T R Q
Sbjct: 718 GGTHLPSTGLVGPIXILRTERIQ 740

>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Length = 157

 Score = 53.0 bits (128), Expect = 4e-09
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 11/130 (8%)

Query: 99  HTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELA----TKDKDLTEADIAAIEQECNNKI 154
           H+  H++   + K+ G     W   + V            D+  ++ +I  IE+  N K+
Sbjct: 9   HSALHVVKGAVVKVLG-SEAKWTYSTYV-KGNKGVLIVKFDRKPSDEEIREIERLANEKV 66

Query: 155 RQGVKVWASEYQPGDPALKT----AHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNIS 210
           ++   +      P + A K      +      +    +++V I+  + N C   H     
Sbjct: 67  KENAPI-KIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKEHTKTTG 125

Query: 211 QLQSIKLLKT 220
           ++  IK+ K 
Sbjct: 126 EIGPIKIRKV 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
3kew_A	241	DHHA1 domain protein; structural genomics, PSI-2,	100.0
2e1b_A	216	PH0108, 216AA long hypothetical alanyl-tRNA synthe	100.0
2zze_A	752	Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML	100.0
2ztg_A	739	Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy	100.0
1v4p_A	157	Alanyl-tRNA synthetase; alanine-tRNA ligase, riken	99.97
1tke_A	224	Threonyl-tRNA synthetase; ligase; 1.46A {Escherich	99.96
1qf6_A	642	THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m	99.92
1nyr_A	645	Threonyl-tRNA synthetase 1; ATP, threonine, ligase	99.91

>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}

Probab=100.00  E-value=2.7e-69  Score=458.62  Aligned_cols=232  Identities=34%  Similarity=0.541  Sum_probs=211.7

Q ss_pred             Cc--ccccccCCCceeeeEEEEEEeCCCCCceeEEEecCcccccCCCCCCCCeeEEceEEEEEEEEeCCEEEEEEccccC
Q psy12707          1 MV--FLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVVDVYRDGDEAVHVVNKEFQ   78 (245)
Q Consensus         1 ~~--~~~~~d~y~~~~~a~v~~~~~~~~~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i~~~~V~~v~~~~~~i~H~~~~~~~   78 (245)
                      ||  +|||+|||+++++|+|++|.+.+   +.++|+||+|+|||+|||||+|+|+|.+++|.+|++.+|.++|++++++.
T Consensus         1 mT~~~ly~~d~y~~~~~a~V~~~~~~~---~~~~vvLd~T~FYpegGGQ~~D~G~i~~~~V~~v~~~~g~i~H~~~~~l~   77 (241)
T 3kew_A            1 MSLTKLYYEDQYIKEFKGEIIEVKEID---GKFHVLLDQTAFFPGGGGQMGDLGLIDGIKVLDVYEEEGKVYHVLEKEPK   77 (241)
T ss_dssp             --CEEGGGTCTTCCEEEECEEEEEEET---TEEEEEESEECCCCCBTTBCCCCEEETTEEEEEEEEETTEEEEEESSCCC
T ss_pred             CcchhhhhhCcccceeEEEEEEEEecC---CeEEEEEeCCcccCCCCCCCCCEEEEeeEEEEEEEEeCCEEEEEECCcCC
Confidence            66  99999999999999999998653   36899999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCcccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcCC
Q psy12707         79 VGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGV  158 (245)
Q Consensus        79 ~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~~  158 (245)
                      +|++|.+.|||+||+++|++|||+|||++|++++||..+.+++++++++|+||+ . . ++++++++||+.||++|++|+
T Consensus        78 ~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~~~G~~v~~~~~r~Df~-~-~-lt~e~l~~IE~~vn~~I~~~~  154 (241)
T 3kew_A           78 KLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANTCGFHLGKEISTVDIV-G-F-LDEKTIREAEKEANRLIFENL  154 (241)
T ss_dssp             CCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSSCEEEEEE-S-C-CCHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCCCCeEeccccCCeEEEEEC-C-C-CCHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999987788888899999999 3 3 999999999999999999999


Q ss_pred             ceeEEEcCCCccccccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeeccccCCCeEEEEEEEch
Q psy12707        159 KVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYLLGR  238 (245)
Q Consensus       159 ~v~~~~~~~~ea~~~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~Ri~~~~G~  238 (245)
                      ||+..++++++|....  .+.+|+++.+.||+|+||++|.++||||||+|||+||.|+|+++   ++.++..||+|++|.
T Consensus       155 pV~~~~~~~~eA~~~~--~~~~~e~~~~~VRvv~ig~~~~~~CgGtHV~~TgeIg~fkI~~~---~~~~~~~RI~~~~G~  229 (241)
T 3kew_A          155 EVKSYAPSKKELKKVK--TRRALPKTDEEIRIVEIVGLDLNACCGVHPRNTRDLQVIKIRRW---EKHKNATRIEYVAGN  229 (241)
T ss_dssp             BEEEECCCTTTTTTCC--CSSCCCCCSSCCCEEEETTTEEEECCSCCCSBSGGGCCEEEEEE---EEETTEEEEEEEEGG
T ss_pred             CEEEEEcCHHHHHhcC--hhhcCCccCCcEEEEEECCeEEEcCCCCCcCCHhhcCCEEEEEE---eccCCcEEEEEEECH
Confidence            9999999999984332  23357778889999999999999999999999999999999999   667888999999999


Q ss_pred             hhhhh
Q psy12707        239 RLMIQ  243 (245)
Q Consensus       239 ~a~~~  243 (245)
                      +|++.
T Consensus       230 ~a~~~  234 (241)
T 3kew_A          230 RAVSE  234 (241)
T ss_dssp             GGC--
T ss_pred             HHHhc
Confidence            99864

>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2

Probab=100.00  E-value=2.2e-61  Score=404.15  Aligned_cols=204  Identities=31%  Similarity=0.480  Sum_probs=185.9

Q ss_pred             cccccccCCCceeeeEEEEEEeCCCCCceeEEEecCcccccCCCCCCCCeeEEceEEEEEEEEe-CCEEEEEEcc--ccC
Q psy12707          2 VFLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVVDVYRD-GDEAVHVVNK--EFQ   78 (245)
Q Consensus         2 ~~~~~~d~y~~~~~a~v~~~~~~~~~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i~~~~V~~v~~~-~~~i~H~~~~--~~~   78 (245)
                      .++||+|||+++++|+|++|.+       .+|+||+|+|||+|||||+|+|+|.+++|.+|++. +|.++|+++.  +++
T Consensus         6 ~~ly~~d~y~~~~~a~V~~~~~-------~~vvld~T~Fype~GGQ~~D~G~i~~~~V~~v~~~~~~~i~H~~~~~~~l~   78 (216)
T 2e1b_A            6 RKLYYEDAYLKEAKGRVLEIRD-------NAILLDQTIFYPTGGGQPHDRGTINGVEVLDVYKDEEGNVWHVVKEPEKFK   78 (216)
T ss_dssp             CCSTTSCTTCCEEEECBCCCCS-------SCCCBSCCCSCCCCTTCCCCCEEETTEEEEEEECCTTCCCEEEESCGGGCC
T ss_pred             HHHHhhCcccceeeEEEEEEeC-------CEEEEeCCCccCCCCCCCCCEEEEccEEEEEEEECcCCEEEEEEccCCCcC
Confidence            3789999999999999999952       27999999999999999999999988999999997 8999999864  688


Q ss_pred             CCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCC---CcccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHH
Q psy12707         79 VGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGY---DTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIR  155 (245)
Q Consensus        79 ~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~---~~~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~  155 (245)
                      +|++|.+.|||++|+++|++|||+|||++|++++||.   .+.+++++++++|+||+.+.+ ++++ +++||+.||++|+
T Consensus        79 ~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~-lt~e-l~~IE~~vn~~I~  156 (216)
T 2e1b_A           79 VGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPEN-LNKY-KEQIISLFNKYVD  156 (216)
T ss_dssp             SSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSC-GGGG-HHHHHHHHHHHHH
T ss_pred             CCCEEEEEECHHHHHHHHHHhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeCCCC-CCHH-HHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999997   666778889999999998765 8886 9999999999999


Q ss_pred             cCCceeEEEcCCCccccccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeeccccCCCeEEEEEE
Q psy12707        156 QGVKVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYL  235 (245)
Q Consensus       156 ~~~~v~~~~~~~~ea~~~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~Ri~~~  235 (245)
                      +++||...+++                    .+|+|+||++|.+|||||||+||++||.|+|++++  .+++|..||+|.
T Consensus       157 ~~~pv~~~~~~--------------------~vRvv~ig~~~~~~CgGtHV~~TgeIg~fkI~~~~--~~~~g~rRi~~~  214 (216)
T 2e1b_A          157 EGGEVKIWWEG--------------------DRRYTQIRDFEVIPCGGTHVKDIKEIGHIKKLKRS--SIGRGKQRLEMW  214 (216)
T ss_dssp             HCCBEEEEESS--------------------SCEEEEETTSCEECCCSCCCSBGGGTCCEEEEEEE--EEETTEEEEEEE
T ss_pred             cCCCEEEEEcC--------------------CEEEEEECCEEEECCCCCCcccHhhCceEEEEEEe--EEcCCEEEEEEE
Confidence            99999988754                    18999999999999999999999999999999993  344889999997


Q ss_pred             E
Q psy12707        236 L  236 (245)
Q Consensus       236 ~  236 (245)
                      .
T Consensus       215 l  215 (216)
T 2e1b_A          215 L  215 (216)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*

Probab=100.00  E-value=4.1e-55  Score=416.69  Aligned_cols=225  Identities=23%  Similarity=0.384  Sum_probs=197.6

Q ss_pred             ccccccCCCceeeeEEEEEEeCCCCCceeEEEecCcccccCCCCCCCCeeEE--ce--EEEEEEEEeCCEEEEEEcc--c
Q psy12707          3 FLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTL--GG--VEVVDVYRDGDEAVHVVNK--E   76 (245)
Q Consensus         3 ~~~~~d~y~~~~~a~v~~~~~~~~~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i--~~--~~V~~v~~~~~~i~H~~~~--~   76 (245)
                      .+||++||+++++|+|+++.       ..+|+||+|+|||+|||||+|+|+|  .+  +.|.+|++.+|.++|+++.  +
T Consensus       518 ~l~Y~~~yl~~~~a~Vl~i~-------~~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~~~~~  590 (752)
T 2zze_A          518 RLYYEDPFMXEFDAXVLRVI-------XDWVILDATAFYPEGGGQPYDTGVLIVNGREVXVTNVQXVGXVIIHXVEDPGA  590 (752)
T ss_dssp             EHHHHCTTCCEEEEEEEEEE-------TTEEEESEECSCCSBTTBCCCCEEEEETTEEEEEEEEEEETTEEEEEESCGGG
T ss_pred             eecccCCccceEEEEEEEEE-------cCEEEEeCCCCCCCCCCCCCCEEEEEeCCEEEEEEeeeecCcEEEEeccccCc
Confidence            57899999999999999998       3479999999999999999999999  55  8999999999999999863  5


Q ss_pred             cCCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCc--ccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHH
Q psy12707         77 FQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDT--ESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKI  154 (245)
Q Consensus        77 ~~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~--~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I  154 (245)
                      +.+|++|.+.|||+||+.+|++|||+|||++|++++||...  .+.+++++++|+||+.+.. ++++++.+||+.||++|
T Consensus       591 l~vGd~V~~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~-lt~edL~~IE~~vNeiI  669 (752)
T 2zze_A          591 FXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXR-ISEEELXEIEMLANRIV  669 (752)
T ss_dssp             CCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSC-CCHHHHHHHHHHHHHHH
T ss_pred             cCcCCeEEEEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCC-CCHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999753  3445678899999998766 99999999999999999


Q ss_pred             HcCCceeEEEcCCCccc-cccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeecccc-CCCeEEE
Q psy12707        155 RQGVKVWASEYQPGDPA-LKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQK-SKSLCIY  232 (245)
Q Consensus       155 ~~~~~v~~~~~~~~ea~-~~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~-~~~~~Ri  232 (245)
                      ++++||...++++++|. ...+..-.-.+.|.+.||||+||++|.++||||||+|||+||.|+|+++   ++ ++|..||
T Consensus       670 ~~nlpV~~~~~s~eEA~~~~~~~lf~~ge~ygd~VRVV~IGd~svelCGGTHV~nTgeIG~fKIls~---s~i~~GvrRI  746 (752)
T 2zze_A          670 MEDRXVTWEWLPRTTAEQXYGFRLYQGGVVPGREIRVVXIEDWDVQACGGTHLPSTGLVGPIXILRT---ERIQDGVERI  746 (752)
T ss_dssp             HHTCBEEEEEEEHHHHHHHHCGGGCSSCCCCSSEEEEEEETTTEEEECCSCCCSBGGGGCCEEEEEE---EEEETTEEEE
T ss_pred             HhCCccceeecCHHHHhhcchhhhhcCCCCCCCeEEEEEECCceeCCCCCCccCCHhHccEEEEEEE---EEEcCCEEEE
Confidence            99999999999998883 2222110002345678999999999999999999999999999999999   54 4899999


Q ss_pred             EEEEch
Q psy12707        233 LYLLGR  238 (245)
Q Consensus       233 ~~~~G~  238 (245)
                      ++++|.
T Consensus       747 eavtG~  752 (752)
T 2zze_A          747 IFACGE  752 (752)
T ss_dssp             EEEECC
T ss_pred             EEEeCC
Confidence            999994

>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}

Probab=100.00  E-value=2e-53  Score=404.94  Aligned_cols=225  Identities=22%  Similarity=0.304  Sum_probs=196.3

Q ss_pred             ccccccCCCceeeeEEEEEEeCCCCCceeEEEecCcccccCCCCCCCCeeEE--ce--EEEEEEEEeCCEEEEEEcccc-
Q psy12707          3 FLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTL--GG--VEVVDVYRDGDEAVHVVNKEF-   77 (245)
Q Consensus         3 ~~~~~d~y~~~~~a~v~~~~~~~~~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i--~~--~~V~~v~~~~~~i~H~~~~~~-   77 (245)
                      .+||++||+++++|+|+++.       ..+|+||+|+|||+|||||+|+|+|  .+  +.|.+|++.+|.++|++++++ 
T Consensus       506 ~l~Y~~~y~~~~~a~Vl~i~-------~~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~~~~~  578 (739)
T 2ztg_A          506 KLYYDDPTLLEFEAEVIGVE-------GDFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEADGVVLHVVKGAKP  578 (739)
T ss_dssp             ECTTTCTTCCEEEEEEEEEE-------TTEEEESEECCCCSBTTBCCCCEEEEETTEEEEECEEEEETTEEEEECCSSCC
T ss_pred             eecccCCcccEEEEEEEEEE-------cCEEEEeCCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEcccCC
Confidence            68999999999999999998       3479999999999999999999999  55  899999999999999998777 


Q ss_pred             CCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCcc--cccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHH
Q psy12707         78 QVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTE--SWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIR  155 (245)
Q Consensus        78 ~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~~--~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~  155 (245)
                      .+|++|.+.|||+||+.+|++|||+|||++|++++||..+.  +..++++++|+||+.+.. ++++++.+||+.||++|+
T Consensus       579 ~~Gd~V~~~VD~~rR~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~~~~-lT~edL~~IE~~vNeiI~  657 (739)
T 2ztg_A          579 EVGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRR-PSEEEIKEIEMLANREIL  657 (739)
T ss_dssp             CTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEECSSC-CCHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeCCCC-CCHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999997532  345567899999997665 999999999999999999


Q ss_pred             cCCceeEEEcCCCcc-ccccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeecccc-CCCeEEEE
Q psy12707        156 QGVKVWASEYQPGDP-ALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQK-SKSLCIYL  233 (245)
Q Consensus       156 ~~~~v~~~~~~~~ea-~~~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~-~~~~~Ri~  233 (245)
                      +++||...+++.++| +...+....-...+.+.||||+||+ +.++||||||+|||+||.|+|++.   ++ ++|..||+
T Consensus       658 ~nlpV~~~~~s~eEA~~~~~l~L~~~~~~~~d~VRVV~IGd-~~elCGGTHV~nTgeIg~fkIls~---s~i~~GvrRIe  733 (739)
T 2ztg_A          658 ANKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQVGD-DVQACGGTHCRSTGEIGMLKILKV---ESIQDGVIRFE  733 (739)
T ss_dssp             TTCBEEEEEEEHHHHHHHHCGGGGTTCCCCSSEEEEEEETT-EEEECCSCCCSBGGGGCCEEEEEE---EEEETTEEEEE
T ss_pred             cCCCEEEEEeCHHHHHHhCCHhhhcCCCCCCCeEEEEEECC-eeeCcCCcCcccHhHcCcEEEEEE---eEEcCCEEEEE
Confidence            999999999999988 3222222100122457899999999 799999999999999999999999   54 48999999


Q ss_pred             EEEchh
Q psy12707        234 YLLGRR  239 (245)
Q Consensus       234 ~~~G~~  239 (245)
                      +++|.+
T Consensus       734 avtG~~  739 (739)
T 2ztg_A          734 FAAGEA  739 (739)
T ss_dssp             EEESCC
T ss_pred             EEecCC
Confidence            999963

>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A

Probab=99.97  E-value=1.2e-29  Score=202.07  Aligned_cols=142  Identities=19%  Similarity=0.245  Sum_probs=113.7

Q ss_pred             HHHhhchHHHHHHHHHHHHhC--CCcc-cccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcCCceeEEEcCCCcc
Q psy12707         94 DQTQQHTGQHLLSAVIDKMFG--YDTE-SWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDP  170 (245)
Q Consensus        94 ~~~~~HTa~HlL~~al~~~~g--~~~~-~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~~~v~~~~~~~~ea  170 (245)
                      ..|++|||+|||++|++++||  .... +++++++++|+||+.+.. ++++++.+||+.||++|++|+||...++++++|
T Consensus         4 ~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~-~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~eA   82 (157)
T 1v4p_A            4 IEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRK-PSDEEIREIERLANEKVKENAPIKIYELPREEA   82 (157)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSC-CCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHH
T ss_pred             hHHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEeCCC-CCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHH
Confidence            579999999999999999998  3322 334555578888886555 999999999999999999999999999999988


Q ss_pred             -cccc---ccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeeccccCCCeEEEEEEEch
Q psy12707        171 -ALKT---AHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYLLGR  238 (245)
Q Consensus       171 -~~~~---~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~Ri~~~~G~  238 (245)
                       +...   +..+.+|+. .+.||+|+||++|.++||||||+|||+||.|+|++...+ +.++..||+|.++.
T Consensus        83 ~~~f~~~~~~~~~~~~~-~~~vrv~~ig~~~~~~C~GtHv~~Tg~I~~fki~~~~~~-~~~~~l~v~~~v~~  152 (157)
T 1v4p_A           83 EKMFGEDMYDLFPVPED-VRILKVVVIEDWNVNACNKEHTKTTGEIGPIKIRKVRFR-KSKGLLEIHFELLE  152 (157)
T ss_dssp             HHHHGGGGSCSSCCCTT-CCEEEEEEETTTEEEECCSCCCSBGGGTCCEEEEEEEEE-TTTTEEEEEEEEC-
T ss_pred             HHhhCccccccccCCCC-CCeEEEEEECCeeEeCCCCCccCChhhcceEEEEEEEec-CCCcEEEEEEEEee
Confidence             3221   122223432 257999999999999999999999999999999998432 45788999998874

>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*

Probab=99.96  E-value=5.8e-30  Score=215.18  Aligned_cols=167  Identities=17%  Similarity=0.166  Sum_probs=135.0

Q ss_pred             EeCCEEEEEEccccCCCCEEEEEEchhhh-HHHHhhchHHHHHHHHHHHHhCC-CcccccccCCceEEeeeCCCCCCCHH
Q psy12707         64 RDGDEAVHVVNKEFQVGELLDMKIDWAHR-LDQTQQHTGQHLLSAVIDKMFGY-DTESWNCGSDVCDVELATKDKDLTEA  141 (245)
Q Consensus        64 ~~~~~i~H~~~~~~~~g~~v~~~iD~~~R-~~~~~~HTa~HlL~~al~~~~g~-~~~~~~~~~~~~~id~~~~~~~l~~~  141 (245)
                      +.+|.+++ +..++..|+.|++ |+++.+ -+.|++|||+|||++|++++||. .....+..++++|+||+.+.. ++++
T Consensus        39 kvNg~l~d-L~~~l~~~~~ve~-it~~~~~g~~~~~HS~~HlL~~A~~~~~~~~~~~~g~~~~~g~y~d~~~~~~-~t~e  115 (224)
T 1tke_A           39 RVNGELVD-ACDLIENDAQLSI-ITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRT-LTQE  115 (224)
T ss_dssp             EETTEEEE-TTCCBCSCEEEEE-ECTTSHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCCEETTEEEEEEECSSC-CCHH
T ss_pred             EECCEEec-cceEcCCCCeEEE-EecCchhHHHHHHHHHHHHHHHHHHHHCCCcEEEECCccCCeEEEEEeCCCC-CCHH
Confidence            45788887 4556888888884 777766 48999999999999999999974 222223346789999997765 9999


Q ss_pred             HHHHHHHHHHHHHHcCCceeEEEcCCCcc-cccc-------ccc-cC-CCCCCCCCeEEEEECCccccCCCCCccCCccC
Q psy12707        142 DIAAIEQECNNKIRQGVKVWASEYQPGDP-ALKT-------AHT-RG-LPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQ  211 (245)
Q Consensus       142 ~l~~iE~~~n~~I~~~~~v~~~~~~~~ea-~~~~-------~~~-~~-~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~e  211 (245)
                      ++.+||++||++|++|+||+..++++++| ++..       ... .. +|.  .+.||+|++|++ .++|+||||+|||+
T Consensus       116 dl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~--~~~v~vy~~g~~-~dlC~G~Hv~~Tg~  192 (224)
T 1tke_A          116 DVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAH--DDKPGLYFHEEY-VDMCRGPHVPNMRF  192 (224)
T ss_dssp             HHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCT--TCCCEEEEETTE-EEEESCCCCSBGGG
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCC--CCeeEEEEeCCE-EEECCCcCCCcCcc
Confidence            99999999999999999999999999998 3211       111 01 332  467999999998 79999999999999


Q ss_pred             cccEEEEeeec-----cccCCCeEEEEEEE
Q psy12707        212 LQSIKLLKTTR-----AQKSKSLCIYLYLL  236 (245)
Q Consensus       212 I~~~kI~~~~~-----~~~~~~~~Ri~~~~  236 (245)
                      ||.|+|++.+.     +++++.++|||+++
T Consensus       193 i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a  222 (224)
T 1tke_A          193 CHHFKLMKTAGAYWRGDSNNKMLQRIYGTA  222 (224)
T ss_dssp             CCCEEEEEEEEEEGGGCTTSCEEEEEEEEE
T ss_pred             cceEEEEEecceeEcCCCCCceeEEEEEec
Confidence            99999999863     67778999999986

>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1

Probab=99.92  E-value=1.4e-24  Score=207.32  Aligned_cols=167  Identities=17%  Similarity=0.166  Sum_probs=130.5

Q ss_pred             EeCCEEEEEEccccCCCCEEEEEEchh-hhHHHHhhchHHHHHHHHHHHHhCC-CcccccccCCceEEeeeCCCCCCCHH
Q psy12707         64 RDGDEAVHVVNKEFQVGELLDMKIDWA-HRLDQTQQHTGQHLLSAVIDKMFGY-DTESWNCGSDVCDVELATKDKDLTEA  141 (245)
Q Consensus        64 ~~~~~i~H~~~~~~~~g~~v~~~iD~~-~R~~~~~~HTa~HlL~~al~~~~g~-~~~~~~~~~~~~~id~~~~~~~l~~~  141 (245)
                      +.+|.+++ +..++..+..|+ -|+++ .+-+.|++|||+|||++|++++||. .....+.-++++|+||+.+.+ ++++
T Consensus        39 ~vng~~~d-l~~~l~~d~~~~-~~~~~~~~~~~~~~HSa~HlL~~Al~~~~~~~~~~~G~~i~~gfy~Df~~~~~-~t~e  115 (642)
T 1qf6_A           39 RVNGELVD-ACDLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRT-LTQE  115 (642)
T ss_dssp             EETTEEEE-TTSCBCSCEECC-EECTTSHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCEETTEEEEEEECSSC-CCHH
T ss_pred             EECCEEec-cccccCCCceEE-EeecCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEECCccCCeeEEEEeCCCC-CCHH
Confidence            35788876 345666665665 34554 6778999999999999999999975 221122224789999998766 9999


Q ss_pred             HHHHHHHHHHHHHHcCCceeEEEcCCCcc-cccc-----cc--c--cCCCCCCCCCeEEEEECCccccCCCCCccCCccC
Q psy12707        142 DIAAIEQECNNKIRQGVKVWASEYQPGDP-ALKT-----AH--T--RGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQ  211 (245)
Q Consensus       142 ~l~~iE~~~n~~I~~~~~v~~~~~~~~ea-~~~~-----~~--~--~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~e  211 (245)
                      ++.+||+.||++|++|+||...++++++| +...     .+  .  ..+|+.  +.||+|++|++ .++|+||||+|||+
T Consensus       116 dl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li~~~~~~~--~~v~vy~~g~~-~dlC~GpHv~~Tg~  192 (642)
T 1qf6_A          116 DVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHD--DKPGLYFHEEY-VDMCRGPHVPNMRF  192 (642)
T ss_dssp             HHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHHHHHSCTT--CCCEEEEETTE-EECCSSCCCSBGGG
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcchhhhhhcccCCC--CceEEEEECCE-EEecCCCccCCCCc
Confidence            99999999999999999999999999998 3311     11  1  123432  57999999998 79999999999999


Q ss_pred             cccEEEEeeec-----cccCCCeEEEEEEE
Q psy12707        212 LQSIKLLKTTR-----AQKSKSLCIYLYLL  236 (245)
Q Consensus       212 I~~~kI~~~~~-----~~~~~~~~Ri~~~~  236 (245)
                      ||.|+|++++.     ++++..++|++.++
T Consensus       193 I~~fkl~~~~~~yw~g~~~~~~l~r~~g~~  222 (642)
T 1qf6_A          193 CHHFKLMKTAGAYWRGDSNNKMLQRIYGTA  222 (642)
T ss_dssp             CCSEEEEEEEEEEGGGCTTSCEEEEEEEEE
T ss_pred             ceeEEEeeeccccccCccCCceeEeeeccc
Confidence            99999999863     44557788999997

>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*

Probab=99.91  E-value=1.2e-24  Score=207.98  Aligned_cols=169  Identities=14%  Similarity=0.266  Sum_probs=135.4

Q ss_pred             EeCCEEEEEEccccCCCCEEEEEEchhhhHHHHhhchHHHHHHHHHHHHhCCCccccccc---CCceEEeeeCCCCCCCH
Q psy12707         64 RDGDEAVHVVNKEFQVGELLDMKIDWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCG---SDVCDVELATKDKDLTE  140 (245)
Q Consensus        64 ~~~~~i~H~~~~~~~~g~~v~~~iD~~~R~~~~~~HTa~HlL~~al~~~~g~~~~~~~~~---~~~~~id~~~~~~~l~~  140 (245)
                      +.+|.+++ +..++..+.+|++.-....+...|++|||+|||++|++++||..  .+++|   ++++|+||+.+.. +++
T Consensus        41 ~vng~~~d-l~~~l~~d~~v~~~~~~~~~g~~~~~HSa~HlL~~A~~~~~~~~--~~~~g~~~~~g~~~Df~~~~~-~t~  116 (645)
T 1nyr_A           41 KFNGQLVD-LTKPLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNV--KFGVGPVIEGGFYYDFDIDQN-ISS  116 (645)
T ss_dssp             EETTEEEC-TTSCCCSCBCCCEECTTSHHHHHHHHHHHHHHHHHHHHHHSSSC--EECCCCEETTEEEEEEECSSC-CCS
T ss_pred             EECCEEEe-CCcccCCCCeEEEeeccchhHHHHHHHHHHHHHHHHHHHHcCCc--EEEECCccCCceEEEecCCCC-CCH
Confidence            35787776 34567767777775556667799999999999999999999753  22333   5799999997665 999


Q ss_pred             HHHHHHHHHHHHHHHcCCceeEEEcCCCcc-cccc---cc---ccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcc
Q psy12707        141 ADIAAIEQECNNKIRQGVKVWASEYQPGDP-ALKT---AH---TRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQ  213 (245)
Q Consensus       141 ~~l~~iE~~~n~~I~~~~~v~~~~~~~~ea-~~~~---~~---~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~  213 (245)
                      +++.+||+.||++|++|+||...++++++| +...   .+   ...+|+  .+.||+|++|++ .++|+||||+|||+||
T Consensus       117 edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~~~~--~~~vrv~~~g~~-~dlC~G~Hv~~Tg~i~  193 (645)
T 1nyr_A          117 DDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPE--DENVTLYSQGDF-TDLCRGVHVPSTAKIK  193 (645)
T ss_dssp             TTHHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCCCSS--SCCCEEEEETTE-EEECCSCCCSCGGGCC
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchHHHhhcCCC--CCeeEEEEECCE-EEecCCcccCCCCCCc
Confidence            999999999999999999999999999998 3321   11   112343  247999999998 7999999999999999


Q ss_pred             cEEEEeeec-----cccCCCeEEEEEEEchh
Q psy12707        214 SIKLLKTTR-----AQKSKSLCIYLYLLGRR  239 (245)
Q Consensus       214 ~~kI~~~~~-----~~~~~~~~Ri~~~~G~~  239 (245)
                      .|+|++++.     +++++.++||+.++...
T Consensus       194 ~fkl~~~~~a~~~~~~~~~~l~ri~g~~~~~  224 (645)
T 1nyr_A          194 EFKLLSTAGAYWRGDSNNKMLQRIYGTAFFD  224 (645)
T ss_dssp             EEEEEEEEEEETTSCSSSCEEEEEEEEEESS
T ss_pred             eEEEeeeCchHHHHHhHHHHHHHHHHHhcCC
Confidence            999999962     56678899999998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	245
d2e1ba1	87	b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-t	8e-15
d2e1ba2	129	d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C	2e-14
d1v4pa_	151	d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeo	2e-10

>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 87

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: AlaX-M N-terminal domain-like
domain: AlaX-M trans-editing enzyme, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 65.7 bits (160), Expect = 8e-15
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 10/88 (11%)

Query: 3  FLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVVDV 62
           L   +  LKE K +V+  +       +  + ++ TIF+PTGGGQ  D+GT+ GVEV+DV
Sbjct: 7  KLYYEDAYLKEAKGRVLEIR-------DNAILLDQTIFYPTGGGQPHDRGTINGVEVLDV 59

Query: 63 YRDGDEAVH---VVNKEFQVGELLDMKI 87
          Y+D +  V       ++F+VG+ +++KI
Sbjct: 60 YKDEEGNVWHVVKEPEKFKVGDEVELKI 87

>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 129

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: AlaX-like
domain: AlaX-M trans-editing enzyme, C-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 65.5 bits (159), Expect = 2e-14
 Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 23/140 (16%)

Query: 88  DWAHRLDQTQQHTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELATKDK--DLTEADIAA 145
           DW +R    + HTG HLL  V++++ G +      GS +   +        +        
Sbjct: 1   DWDYRYKLMRIHTGLHLLEHVLNEVLG-EGNWQLVGSGMSVEKGRYDIAYPENLNKYKEQ 59

Query: 146 IEQECNNKIRQGVKVWASEYQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTH 205
           I    N  + +G +V                        +G  R   I   +   C GTH
Sbjct: 60  IISLFNKYVDEGGEV--------------------KIWWEGDRRYTQIRDFEVIPCGGTH 99

Query: 206 VDNISQLQSIKLLKTTRAQK 225
           V +I ++  IK LK +   +
Sbjct: 100 VKDIKEIGHIKKLKRSSIGR 119

>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 151

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: AlaX-like
domain: Hypothetical protein PH0574
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 55.7 bits (133), Expect = 2e-10
 Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 7/144 (4%)

Query: 99  HTGQHLLSAVIDKMFGYDTESWNCGSDVCDVELA---TKDKDLTEADIAAIEQECNNKIR 155
           H+  H++   + K+ G + + W   + V   +       D+  ++ +I  IE+  N K++
Sbjct: 9   HSALHVVKGAVVKVLGSEAK-WTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVK 67

Query: 156 QGVKVWASEYQPGDPALKTAHTRG---LPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQL 212
           +   +   E    +                +    +++V I+  + N C   H     ++
Sbjct: 68  ENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKEHTKTTGEI 127

Query: 213 QSIKLLKTTRAQKSKSLCIYLYLL 236
             IK+ K    +    L I+  LL
Sbjct: 128 GPIKIRKVRFRKSKGLLEIHFELL 151

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	245
d2e1ba2	129	AlaX-M trans-editing enzyme, C-terminal domain {Py	100.0
d1v4pa_	151	Hypothetical protein PH0574 {Archaeon Pyrococcus h	100.0
d1nyra3	179	Threonyl-tRNA synthetase (ThrRS), second 'addition	99.95
d2e1ba1	87	AlaX-M trans-editing enzyme, N-terminal domain {Py	99.92
d1tkea2	162	Threonyl-tRNA synthetase (ThrRS), second 'addition	99.91
d1vjea_	149	Autoinducer-2 production protein LuxS {Deinococcus	81.5

>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: AlaX-like
domain: AlaX-M trans-editing enzyme, C-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=5.2e-36  Score=229.51  Aligned_cols=125  Identities=25%  Similarity=0.316  Sum_probs=110.0

Q ss_pred             chhhhHHHHhhchHHHHHHHHHHHHhCCCc---ccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcCCceeEEE
Q psy12707         88 DWAHRLDQTQQHTGQHLLSAVIDKMFGYDT---ESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASE  164 (245)
Q Consensus        88 D~~~R~~~~~~HTa~HlL~~al~~~~g~~~---~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~~~v~~~~  164 (245)
                      ||+||+.+|++|||+|||++|++++||...   .+++++++.+++||+.+.. ++ ++.++||+.+|++|.+++||...+
T Consensus         1 Dw~rR~~~mr~HTa~Hll~~al~~~~g~~~~~~~G~~i~~~~~r~Df~~~~~-l~-~~~~~ie~~~n~~I~~~~~v~~~~   78 (129)
T d2e1ba2           1 DWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPEN-LN-KYKEQIISLFNKYVDEGGEVKIWW   78 (129)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSC-GG-GGHHHHHHHHHHHHHHCCBEEEEE
T ss_pred             CHHHHHHHHHHhHHHHHHHHHHHHhcCCCcccccccccccceEEEEEecccc-cc-hHHHHHHHHHHHHHHhccchhhhh
Confidence            899999999999999999999999998542   4567888999999998764 55 456899999999999999998764


Q ss_pred             cCCCccccccccccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeeccccCCCeEEEEEEE
Q psy12707        165 YQPGDPALKTAHTRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYLL  236 (245)
Q Consensus       165 ~~~~ea~~~~~~~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~Ri~~~~  236 (245)
                      .                    +.+|+|+|+++|.+|||||||+||++||.|+|++.+  ++++|..||+|..
T Consensus        79 ~--------------------~~~Riv~I~~~d~~~CgGTHV~~T~eIg~i~I~~~~--~~gkg~~RI~~~l  128 (129)
T d2e1ba2          79 E--------------------GDRRYTQIRDFEVIPCGGTHVKDIKEIGHIKKLKRS--SIGRGKQRLEMWL  128 (129)
T ss_dssp             S--------------------SSCEEEEETTSCEECCCSCCCSBGGGTCCEEEEEEE--EEETTEEEEEEEE
T ss_pred             c--------------------ccceEEEeccccccccCCCCCcchhhCccEEEEEEE--EEeCCcEEEEEEe
Confidence            2                    457999999999999999999999999999999993  4669999999974

>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: AlaX-like
domain: Hypothetical protein PH0574
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.3e-33  Score=221.85  Aligned_cols=141  Identities=18%  Similarity=0.261  Sum_probs=115.6

Q ss_pred             HHHHhhchHHHHHHHHHHHHhCCCc---ccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcCCceeEEEcCCCc
Q psy12707         93 LDQTQQHTGQHLLSAVIDKMFGYDT---ESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGD  169 (245)
Q Consensus        93 ~~~~~~HTa~HlL~~al~~~~g~~~---~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~~~v~~~~~~~~e  169 (245)
                      -.+||+|||+|||++|+.++||...   .+++++++.+++||+.+.. ++++++.+||+.||++|+++.||++.+++++|
T Consensus         3 ~~~mR~HTa~HlL~~a~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~-~t~e~l~~iE~~~n~~I~~~~~v~~~~~~~~e   81 (151)
T d1v4pa_           3 SIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRK-PSDEEIREIERLANEKVKENAPIKIYELPREE   81 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSC-CCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHH
T ss_pred             cccHHHhHHHHHHHHHHHHHhCcCceeeeeceecCCccEEEEecccc-chhHHHHHHHHHHHHhhhcccccceEEeeccc
Confidence            3689999999999999999998643   2445667778888887665 99999999999999999999999999999998


Q ss_pred             c-cccccc---ccCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeeccccCCCeEEEEEEE
Q psy12707        170 P-ALKTAH---TRGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTRAQKSKSLCIYLYLL  236 (245)
Q Consensus       170 a-~~~~~~---~~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~~~~~~~~~Ri~~~~  236 (245)
                      | ++....   ....|+ ..+.+|+|.|+|+|.+|||||||+|||+||.|+|+++++ ++++|..||+|.+
T Consensus        82 a~~~~~~~~~~~~~~~~-~~~~iriv~i~~~d~~~CgGTHV~~T~eIg~~kI~~~~~-~~~kg~~Ri~f~l  150 (151)
T d1v4pa_          82 AEKMFGEDMYDLFPVPE-DVRILKVVVIEDWNVNACNKEHTKTTGEIGPIKIRKVRF-RKSKGLLEIHFEL  150 (151)
T ss_dssp             HHHHHGGGGSCSSCCCT-TCCEEEEEEETTTEEEECCSCCCSBGGGTCCEEEEEEEE-ETTTTEEEEEEEE
T ss_pred             ccccccccccccccCCc-cccceEEEeecCceeeCCCCCccCChhhceeEEEEEEEe-eccCCcEEEEEEe
Confidence            8 322211   122333 346799999999999999999999999999999999821 3569999999964

>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
domain: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.95  E-value=1.6e-27  Score=191.58  Aligned_cols=145  Identities=14%  Similarity=0.219  Sum_probs=113.8

Q ss_pred             hhhhHHHHhhchHHHHHHHHHHHHhCCCccc-ccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcCCceeEEEcCC
Q psy12707         89 WAHRLDQTQQHTGQHLLSAVIDKMFGYDTES-WNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQP  167 (245)
Q Consensus        89 ~~~R~~~~~~HTa~HlL~~al~~~~g~~~~~-~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~~~v~~~~~~~  167 (245)
                      .+.++. ..+|||+|||++|++++||....+ .+..++++|+||+.+.+ ++++++..||+.||++|.+++||+...+++
T Consensus         4 ~~~~l~-i~~HSathlL~~Al~~~~~~~~~~~G~~~~~gf~~Df~~~~~-lt~edl~~IE~~m~~iI~~~~~i~~~~~~~   81 (179)
T d1nyra3           4 SEEALE-VLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGGFYYDFDIDQN-ISSDDFEQIEKTMKQIVNENMKIERKVVSR   81 (179)
T ss_dssp             SHHHHH-HHHHHHHHHHHHHHHHHSSSCEECCCCEETTEEEEEEECSSC-CCSTTHHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred             CHHHHH-HHhHhHHHHHHHHHHHHCCCcEEEEeeeeccceEEEEeeccc-CCHHHHHHHHHHHHHHHHhhcceEEEEcCH
Confidence            344444 457999999999999999865432 23345789999998776 999999999999999999999999999999


Q ss_pred             Ccc-cccc---ccccCCCCCC-CCCeEEEEECCccccCCCCCccCCccCcccEEEEeeec-----cccCCCeEEEEEEE
Q psy12707        168 GDP-ALKT---AHTRGLPKDH-KGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTR-----AQKSKSLCIYLYLL  236 (245)
Q Consensus       168 ~ea-~~~~---~~~~~~p~~~-~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~-----~~~~~~~~Ri~~~~  236 (245)
                      ++| ++..   ++...+.+.+ .+.++++.+|++ +++|+||||+|||+||.|+|++++.     +++++.++||++++
T Consensus        82 ~eA~~~f~~~~~k~~~i~~~~~~~~v~vy~~g~~-~dlC~G~Hv~~T~~I~~fki~~~sgay~~g~~~~~~L~ri~G~a  159 (179)
T d1nyra3          82 DEAKELFSNDEYKLELIDAIPEDENVTLYSQGDF-TDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTA  159 (179)
T ss_dssp             THHHHHCSSCHHHHHHHCCCSSSCCCEEEEETTE-EEECCSCCCSCGGGCCEEEEEEEEEEETTSCSSSCEEEEEEEEE
T ss_pred             HHHHHHhccCccceehhhhcCCCCcEEEEeeCCE-EEecCCCCCccccccCceEEEEeecccccCccchhheeeeHhhc
Confidence            999 3211   1111122222 356999999998 8999999999999999999998863     44557789998886

>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: AlaX-M N-terminal domain-like
domain: AlaX-M trans-editing enzyme, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.92  E-value=2.3e-26  Score=163.25  Aligned_cols=80  Identities=44%  Similarity=0.795  Sum_probs=71.6

Q ss_pred             Cc-ccccccCCCceeeeEEEEEEeCCCCCceeEEEecCcccccCCCCCCCCeeEEceEEEEEEEEe-CCEEEEEEcc--c
Q psy12707          1 MV-FLCQRNCSLKEYKSKVVSCKRNETRPTEYHVRMEDTIFFPTGGGQHCDKGTLGGVEVVDVYRD-GDEAVHVVNK--E   76 (245)
Q Consensus         1 ~~-~~~~~d~y~~~~~a~v~~~~~~~~~~~~~~i~ld~T~Fyp~gGGQ~~D~G~i~~~~V~~v~~~-~~~i~H~~~~--~   76 (245)
                      || +||++|||+++++|+|+++.       ..+|+||+|+|||+|||||+|+|+|..++|.+|++. ++.++|++..  +
T Consensus         4 mT~~ly~~d~y~~e~~a~V~~i~-------~~~vild~T~FYpegGGQ~~D~G~i~~~~V~~v~k~~~~~i~H~~~~~~~   76 (87)
T d2e1ba1           4 MTRKLYYEDAYLKEAKGRVLEIR-------DNAILLDQTIFYPTGGGQPHDRGTINGVEVLDVYKDEEGNVWHVVKEPEK   76 (87)
T ss_dssp             SCCCSTTSCTTCCEEEECBCCCC-------SSCCCBSCCCSCCCCTTCCCCCEEETTEEEEEEECCTTCCCEEEESCGGG
T ss_pred             hhhHHhhcCCcccEEEEEEEEEe-------CCEEEEeccccccCCCCCCCCEEEEeeEEEEEEEEeCCCEEEEEecCCCC
Confidence            54 58999999999999999987       346999999999999999999999999999999875 6789999964  5


Q ss_pred             cCCCCEEEEEE
Q psy12707         77 FQVGELLDMKI   87 (245)
Q Consensus        77 ~~~g~~v~~~i   87 (245)
                      |++|++|.++|
T Consensus        77 l~vGd~V~~~I   87 (87)
T d2e1ba1          77 FKVGDEVELKI   87 (87)
T ss_dssp             CCSSSCEEEEE
T ss_pred             CCCCCEEEEEC
Confidence            99999999986

>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
domain: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.2e-24  Score=170.51  Aligned_cols=139  Identities=17%  Similarity=0.197  Sum_probs=112.4

Q ss_pred             HHHhhchHHHHHHHHHHHHhCC-CcccccccCCceEEeeeCCCCCCCHHHHHHHHHHHHHHHHcCCceeEEEcCCCccc-
Q psy12707         94 DQTQQHTGQHLLSAVIDKMFGY-DTESWNCGSDVCDVELATKDKDLTEADIAAIEQECNNKIRQGVKVWASEYQPGDPA-  171 (245)
Q Consensus        94 ~~~~~HTa~HlL~~al~~~~g~-~~~~~~~~~~~~~id~~~~~~~l~~~~l~~iE~~~n~~I~~~~~v~~~~~~~~ea~-  171 (245)
                      +...+||++|||+.|++++|+. .....+..+++||+||+.+.+ ++++++..||++|+++|.++.|+....++.++|. 
T Consensus         6 l~v~rhS~ahlLa~Av~~l~p~~kl~~g~~~~~GfyyD~~~~~~-~~~edl~~ie~~m~~ii~~~~~~~~~~~s~~~a~~   84 (162)
T d1tkea2           6 LEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRT-LTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARE   84 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCEECCCCEETTEEEEEEECSSC-CCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCcEEEeccccCCeEEEEeeccCC-CCHHHHHHHHHHHHHHHHhcCCceEEEechHHHHH
Confidence            3467999999999999999854 222233446899999998776 9999999999999999999999999999988872 


Q ss_pred             cccc---c----c--cCCCCCCCCCeEEEEECCccccCCCCCccCCccCcccEEEEeeec-----cccCCCeEEEEEEE
Q psy12707        172 LKTA---H----T--RGLPKDHKGSIRIVHIDGIDNNMCCGTHVDNISQLQSIKLLKTTR-----AQKSKSLCIYLYLL  236 (245)
Q Consensus       172 ~~~~---~----~--~~~p~~~~~~vRiv~i~~~~~~~CgGtHV~~T~eI~~~kI~~~~~-----~~~~~~~~Ri~~~~  236 (245)
                      ....   .    .  ...+  ....+.++++|++ .++|.||||+|||.|+.|+|+++++     +++++.++||+++|
T Consensus        85 ~~~~~~~~~k~~~~~~~~~--~~~~~~~y~~g~~-~dlc~Gphv~sTg~ik~FkL~~vsgaYw~gd~~n~~LqRiyg~a  160 (162)
T d1tkea2          85 TFANRGESYKVSILDENIA--HDDKPGLYFHEEY-VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTA  160 (162)
T ss_dssp             HHHHTTCHHHHHHHHHHSC--TTCCCEEEEETTE-EEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEE
T ss_pred             HHHHhhcchhhheeecccc--ccccceeeccCce-EeecCCCccccCcccceEEEEEechhhcCCCCCCcccEEEEEEE
Confidence            2111   0    0  0011  1356899999998 7999999999999999999999984     78889999999986

>d1vjea_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: Autoinducer-2 production protein LuxS
domain: Autoinducer-2 production protein LuxS
species: Deinococcus radiodurans [TaxId: 1299]

Probab=81.50  E-value=1.7  Score=31.28  Aligned_cols=59  Identities=17%  Similarity=0.192  Sum_probs=39.3

Q ss_pred             HHHhhchHHHHHHHHHHHHhCCCcccc-cccC-CceEEeeeCCCCCCCHHH-HHHHHHHHHHHHHc
Q psy12707         94 DQTQQHTGQHLLSAVIDKMFGYDTESW-NCGS-DVCDVELATKDKDLTEAD-IAAIEQECNNKIRQ  156 (245)
Q Consensus        94 ~~~~~HTa~HlL~~al~~~~g~~~~~~-~~~~-~~~~id~~~~~~~l~~~~-l~~iE~~~n~~I~~  156 (245)
                      .....||..||++..++.... .+..+ ++|. .|||+-+...   .+.++ +..+++.++.+...
T Consensus        45 ~~~~~HTlEHL~A~~lRn~~~-~iId~sPMGCrTGFYl~~~g~---~~~~~i~~~~~~~l~~i~~~  106 (149)
T d1vjea_          45 DPAAIHTLEHLLAGYMRDHLE-GVVDVSPMGCRTGMYMAVIGE---PDEQGVMKAFEAALKDTAGH  106 (149)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCT-TEEEEEECTTSSEEEEEEESS---CCHHHHHHHHHHHHHHHHTC
T ss_pred             CCcchhHHHHHHHHHHHhCCC-CeEEECCCccccccEEEEeCC---CCHHHHHHHHHHHHHHHHhc
Confidence            456799999999999988543 33433 4554 4788766543   55554 57777888777543