Psyllid ID: psy12708

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-----
MIFKECASDGQEECQNTLQSQVDQSMDSVQSRLDASRRPYIEILEQPKSKVRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCTNGIFCATLLEGDMTYSFTNLGIQCMKKKDIQAFRLYLQFCQRPFNSEKNSAWTLLGVMGFNNRDNLDLNAVRLCFQAYLPKDKDNVIKLEPVVSDIIYDAKTYSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFEINDPVHVKIQLVTKKDISEPYNFMLTPLDSGRPIFWRYRKNKAQPLALVNLFQNTMTQFVPGEEKKISQDEQIVSAEPIKEKENDYARVDKSVNINMKPHVTFSQHDTDMETNQVPDVLFDTKEKIDERFEELLNEVSNLKDTLEEKNDFLLIEDSNNAVITLDELDDLNNNVNESSVTIEEVHEFPKEHLGQRTEGYGSYSSLQLAMKNQYFIDRNSGGECYEDVLPPQDIPTPPPEVATPPVKPVALSNVKVVIPPASKVTTPPPRPPSHTKPNLATLQRKSTSDKFDSVSTHDDNIPPLPPKRSRKSGLDKNLPPVPKYKSFFHKLFFKSKSKSKPATPRERSLSIDSRKVGGGGSINDDVMLTEAEHYALYTSVAPHATQSEFDEASFYYSPVEGLATK
ccccccccccccHHHccccccccccccccccccccccccEEEEEEcccccccEEEEccccccccccccccccccccccEEEEccccccEEEEEEEEEccccccccccEEEccccccccEEEEEcccccEEEEEEcccccccccccHHHHHHHHHHccccccccccHHHHHHcccccccccccccccEEEEEEEEEEcccccEEEEccEEEccccccccccccEEEEEcccccccccccEEEEEEccccccccEEEEEEccccccccEEEcccccccccEEEEEEccccccccccccEEEEEEEEcccccccccccEEEcccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccEEEcccccccccc
cccccccccccccHHccccccccccccccccccccccccEEEEEEccccccccEEHHHccccccccEcccccccccccEEEEEcccccEEEEEEEEcccccccEcccEEEcccEccccEEEEEEcccccEEEEccccEEEEcHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccEEEEEEEEEEccccccccEcccEEEEEEEEccccccccEEEEcccEEEcccccEEEEEEcccccccEEEEEEEEcccccEEEEEccccHEccccEEEEEccccccccccccEEEEEEEEcccccccccccEEccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcHHHHHHHHHHHHHccccccccccHHHccccccEEEHHHHccccccccHHHHHHHccccccccccccccccccccHHHHHHccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHcccccEEEccccccccc
mifkecasdgqeECQNTLQSQVDQSMDSVQSRldasrrpyieileqpkskvrfryecegrsagsimganstlecksypkimirnyVGDAHLVVSCvskdspyrshphklvskdnctngifcatllegdmtysftnlGIQCMKKKDIQAFRLYLQFCqrpfnseknsAWTLLGVmgfnnrdnldLNAVRLCFQaylpkdkdnviklepvVSDIiydaktysdltihtlshvsapvvgdMKMIILCDKVNKDDIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLktpayksfeindpvHVKIQLVTkkdisepynfmltpldsgrpiFWRYRKNKAQPLALVNLFQNTmtqfvpgeekkisqdeqivsaepikekendyarvdksvninmkphvtfsqhdtdmetnqvpdvlfDTKEKIDERFEELLNEVSNLKDTLEEKndflliedsnnaviTLDElddlnnnvnessVTIEEvhefpkehlgqrtegygsysSLQLAMKNQYFidrnsggecyedvlppqdiptpppevatppvkpvalsnvkvvippaskvttppprppshtkpnlatlqrkstsdkfdsvsthddnipplppkrsrksgldknlppvpkyksFFHKLFfkskskskpatprerslsidsrkvggggsinddvMLTEAEHYALYtsvaphatqsefdeasfyyspveglatk
mifkecasdgqEECQNTLQSQVDQSMDSVQSrldasrrpyieileqpkskvrfRYECEGrsagsimganstLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRShphklvskdnctnGIFCATLLEGDMTYSFTNLGIQCMKKKDIQAFRLYLQFCQRPFNSEKNSAWTLLGVMGFNNRDNLDLNAVRLCFQAylpkdkdnviklEPVVSDIIYDAKTYSDLTIhtlshvsapvvgDMKMIILCDKVNKDDIEVRfyeeqdgvvvwdeRVKTLEVHKQYAIVLktpayksfeindPVHVKIQLVTkkdisepynfmltpldsGRPIFWRYRKNKAQPLALVNLFQNTMTQFVPgeekkisqdeqivsaepikekendyaRVDKSVNINMKPHvtfsqhdtdmetNQVPDVLFDTKEKIDERFEELLNEVSNLKDTLEEKNDFLLIEDSNNAVITLDELDDLNNNVNESSVTIEEvhefpkehlgqrTEGYGSYSSLQLAMKNQYFIDRNSGGECYEDVLPPQDIPTPPPEVATPPVKPVALSNVKVVIPPaskvttppprppshtkpnlatlqrkstsdkfdsvsthddnipplppkrsrksgldknLPPVPKYKSFFHKLffkskskskpatprerslsidsrkvggggSINDDVMLTEAEHYALYTSVAPHATQSEFDEASFYYSPVEGLATK
MIFKECASDGQEECQNTLqsqvdqsmdsvqsRLDASRRPYIEILEQPKSKVRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCTNGIFCATLLEGDMTYSFTNLGIQCMKKKDIQAFRLYLQFCQRPFNSEKNSAWTLLGVMGFNNRDNLDLNAVRLCFQAYLPKDKDNVIKLEPVVSDIIYDAKTYSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFEINDPVHVKIQLVTKKDISEPYNFMLTPLDSGRPIFWRYRKNKAQPLALVNLFQNTMTQFVPGEEKKISQDEQIVSAEPIKEKENDYARVDKSVNINMKPHVTFSQHDTDMETNQVPDVLFDTKEKIDERFEELLNEVSNLKDTLEEKNDFLLIEDSNNAVITldelddlnnnvnessvTIEEVHEFPKEHLGQRTEGYGSYSSLQLAMKNQYFIDRNSGGECYEDVLPPQDIptpppevatppvkpvaLSNVKVVIppaskvttppprppshtkpNLATLQRKSTSDKFDSVSTHDDNIPPLPPKRSRKSGLDKNLPPVPkyksffhklffkskskskPATPRERSLSIDSRKVGGGGSINDDVMLTEAEHYALYTSVAPHATQSEFDEASFYYSPVEGLATK
****************************************IEIL*****KVRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCTNGIFCATLLEGDMTYSFTNLGIQCMKKKDIQAFRLYLQFCQRPFNSEKNSAWTLLGVMGFNNRDNLDLNAVRLCFQAYLPKDKDNVIKLEPVVSDIIYDAKTYSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFEINDPVHVKIQLVTKKDISEPYNFMLTPLDSGRPIFWRYRKNKAQPLALVNLFQNTMTQFV*********************************************************VLFDT**KIDERFEELLNEVSNLKDTLEEKNDFLLIEDSNNAVITLDELDDLNNNV****VTI**V*************GYGSYSSLQLAMKNQYFIDRNSGGECYEDV***********************************************************************************************YKSFFHKLFF******************************DDVMLTEAEHYALYTSVAPHA****F**ASFYY*********
*****************************************EILEQPKSKVRFRY*********************YPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCTNGIFCATLLEGDMTYSFTNLGIQCMKKKDIQAFRLY*****************************LDLNAVRLCFQAYLPKDKDNVIKLEPVVSDIIYDAKTYSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFEINDPVHVKIQLV******EP**FMLTPLDSG******************************************************************************************************************************************************************************L*****************************************************************************************************************************************************************EAEHYALYTSVAPHATQSEFDEASFYYSPVEGLA**
*******************************RLDASRRPYIEILEQPKSKVRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCTNGIFCATLLEGDMTYSFTNLGIQCMKKKDIQAFRLYLQFCQRPFNSEKNSAWTLLGVMGFNNRDNLDLNAVRLCFQAYLPKDKDNVIKLEPVVSDIIYDAKTYSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFEINDPVHVKIQLVTKKDISEPYNFMLTPLDSGRPIFWRYRKNKAQPLALVNLFQNTMTQFVPGEEKKISQDEQIVSAEPIKEKENDYARVDKSVNINMKPHVTFSQHDTDMETNQVPDVLFDTKEKIDERFEELLNEVSNLKDTLEEKNDFLLIEDSNNAVITLDELDDLNNNVNESSVTIEEVHEFPKEHLGQRTEGYGSYSSLQLAMKNQYFIDRNSGGECYEDVLPPQDIPTPPPEVATPPVKPVALSNVKVVIPPAS**************PNLATLQ****************NIPPLPPKRSRKSGLDKNLPPVPKYKSFFHKLFFKS***************IDSRKVGGGGSINDDVMLTEAEHYALYTSVAPHATQSEFDEASFYYSPVEGLATK
*IFKECASDGQEECQNTLQSQ*DQ***********SRRPYIEILEQPKSKVRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCTNGIFCATLLEGDMTYSFTNLGIQCMKKKDIQAFRLYLQFCQRPFNSEKNSAWTLLGVMGFNNRDNLDLNAVRLCFQAYLPKDKDNVIKLEPVVSDIIYDAKTYSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFEINDPVHVKIQLVTKKDISEPYNFMLTPLDSGRPIFWRYRK**************************************************************************VPDVLFDTKEKIDERFEELLNEVSNLKDTLEEKNDFLLIEDSNNAVITLDELDDLNNNVNESSVTIEEVHEFPKEHLGQRTEGYGSYSSLQLAMKNQYFIDRNSGGECYEDVLPPQDIPTPPPEVATPPVKP**LSNVKVVIP*****************************************IPPLPP*****SGLDKNLPPVPKYKSFFHKLFFK*********************V*GGGSINDDVMLTEAEHYALYTSVAPHATQSEFDEASFYYSPVEGL***
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MIFKECASDGQEECQNTLQSQVDQSMDSVQSRLDASRRPYIEILEQPKSKVRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCTNGIFCATLLEGDMTYSFTNLGIQCMKKKDIQAFRLYLQFCQRPFNSEKNSAWTLLGVMGFNNRDNLDLNAVRLCFQAYLPKDKDNVIKLEPVVSDIIYDAKTYSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDERVKTLEVHKQYAIVLKTPAYKSFEINDPVHVKIQLVTKKDISEPYNFMLTPLDSGRPIFWRYRKNKAQPLALVNLFQNTMTQFVPGEEKKISQDEQIVSAEPIKEKENDYARVDKSVNINMKPHVTFSQHDTDMETNQVPDVLFDTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDSNNAVITLDELDDLNNNVNESSVTIEEVHEFPKEHLGQRTEGYGSYSSLQLAMKNQYFIDRNSGGECYEDVLPPQDIPTPPPEVATPPVKPVALSNVKVVIPPASKVTTPPPRPPSHTKPNLATLQRKSTSDKFDSVSTHDDNIPPLPPKRSRKSGLDKNLPPVPKYKSFFHKLFFKSKSKSKPATPRERSLSIDSRKVGGGGSINDDVMLTEAEHYALYTSVAPHATQSEFDEASFYYSPVEGLATK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query695 2.2.26 [Sep-21-2011]
P15330 999 Embryonic polarity protei yes N/A 0.428 0.298 0.447 9e-68
P16236598 Proto-oncogene c-Rel OS=G yes N/A 0.381 0.443 0.420 6e-51
Q04206551 Transcription factor p65 yes N/A 0.379 0.479 0.408 3e-50
P01125538 Proto-oncogene c-Rel (Fra no N/A 0.381 0.492 0.417 3e-50
P01126503 Transforming protein rel N/A N/A 0.381 0.526 0.413 4e-50
Q04207549 Transcription factor p65 yes N/A 0.379 0.480 0.408 6e-50
Q04864619 Proto-oncogene c-Rel OS=H no N/A 0.443 0.497 0.388 2e-49
Q04863558 Transcription factor RelB no N/A 0.382 0.476 0.395 7e-49
Q04865527 Putative transcription fa N/A N/A 0.387 0.510 0.405 5e-48
Q01201579 Transcription factor RelB no N/A 0.382 0.459 0.395 8e-48
>sp|P15330|DORS_DROME Embryonic polarity protein dorsal OS=Drosophila melanogaster GN=dl PE=1 SV=2 Back     alignment and function desciption
 Score =  258 bits (660), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 145/324 (44%), Positives = 195/324 (60%), Gaps = 26/324 (8%)

Query: 37  RRPYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSC 95
           ++PY++I EQP  K +RFRYECEGRSAGSI G NST E K+YP I I  Y G A +VVSC
Sbjct: 45  KKPYVKITEQPAGKALRFRYECEGRSAGSIPGVNSTPENKTYPTIEIVGYKGRAVVVVSC 104

Query: 96  VSKDSPYRSHPHKLVSKDNCTNGIFCATLLEGDMTYSFTNLGIQCMKKKDIQ-AFRLYLQ 154
           V+KD+PYR HPH LV K+ C  G+    +    M   F+NLGIQC+KKKDI+ A +   +
Sbjct: 105 VTKDTPYRPHPHNLVGKEGCKKGVCTLEINSETMRAVFSNLGIQCVKKKDIEAALKAREE 164

Query: 155 FCQRPFNSEKNSAWTLLGVMGFNNR---DNLDLNAVRLCFQAYLPKDKDNVIK--LEPVV 209
               PF +            GF++R    ++DLN+VRLCFQ ++  ++       L PVV
Sbjct: 165 IRVDPFKT------------GFSHRFQPSSIDLNSVRLCFQVFMESEQKGRFTSPLPPVV 212

Query: 210 SDIIYDAKTYSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDE- 268
           S+ I+D K  SDL I  L   SA V G+ ++I+LC+KV K+DI VRF+EE++G  VW+  
Sbjct: 213 SEPIFDKKAMSDLVICRLCSCSATVFGNTQIILLCEKVAKEDISVRFFEEKNGQSVWEAF 272

Query: 269 -RVKTLEVHKQYAIVLKTPAYKSFEINDPVHVKIQLVTKKD--ISEPYNFMLTPLDSGRP 325
              +  +VHKQ AI  KTP Y + +I +P  V IQL    D   SE   F   P+DSG+ 
Sbjct: 273 GDFQHTDVHKQTAITFKTPRYHTLDITEPAKVFIQLRRPSDGVTSEALPFEYVPMDSGKH 332

Query: 326 IFWR-YRKNKAQPLALVNLFQNTM 348
            FW  +R  K +P    +LFQ  +
Sbjct: 333 TFWNLHRHLKRKPDE--DLFQQIL 354
Embryonic developmental protein. The lateral or ventral identity of a cell depends upon the concentration of dorsal protein in its nucleus during the blastoderm stage. Dorsal is a morphogenetic protein that specifically binds to the kappa B-related consensus sequence 5'-GRGAAAANCC-3', located in the enhancer region of zygotic genes such as Zen, Twist, Snail and Decapentaplegic. Mediates an immune response in Drosophila larvae.
Drosophila melanogaster (taxid: 7227)
>sp|P16236|REL_CHICK Proto-oncogene c-Rel OS=Gallus gallus GN=REL PE=1 SV=2 Back     alignment and function description
>sp|Q04206|TF65_HUMAN Transcription factor p65 OS=Homo sapiens GN=RELA PE=1 SV=2 Back     alignment and function description
>sp|P01125|REL_MELGA Proto-oncogene c-Rel (Fragment) OS=Meleagris gallopavo GN=REL PE=3 SV=3 Back     alignment and function description
>sp|P01126|REL_AVIRE Transforming protein rel polyprotein OS=Avian reticuloendotheliosis virus GN=V-REL PE=4 SV=1 Back     alignment and function description
>sp|Q04207|TF65_MOUSE Transcription factor p65 OS=Mus musculus GN=Rela PE=1 SV=1 Back     alignment and function description
>sp|Q04864|REL_HUMAN Proto-oncogene c-Rel OS=Homo sapiens GN=REL PE=1 SV=1 Back     alignment and function description
>sp|Q04863|RELB_MOUSE Transcription factor RelB OS=Mus musculus GN=Relb PE=1 SV=2 Back     alignment and function description
>sp|Q04865|TF65_XENLA Putative transcription factor p65 homolog OS=Xenopus laevis GN=rela PE=2 SV=1 Back     alignment and function description
>sp|Q01201|RELB_HUMAN Transcription factor RelB OS=Homo sapiens GN=RELB PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query695
242022178793 embryonic polarity dorsal, putative [Ped 0.830 0.727 0.322 4e-84
58202307 844 Dorsal isoform 1-B [Aedes aegypti] 0.788 0.649 0.343 3e-77
170032417 845 embryonic polarity protein dorsal [Culex 0.795 0.654 0.343 2e-76
156891045611 dorsal 1B [Rhodnius prolixus] 0.456 0.518 0.469 2e-75
156891043624 dorsal 1A [Rhodnius prolixus] 0.456 0.508 0.469 3e-75
156891047579 dorsal 1C [Rhodnius prolixus] 0.411 0.493 0.504 3e-75
307196757 817 Embryonic polarity protein dorsal [Harpe 0.431 0.367 0.476 6e-75
283484000 810 dorsal protein isoform B [Apis mellifera 0.410 0.351 0.5 1e-74
157116697579 embryonic polarity dorsal [Aedes aegypti 0.404 0.485 0.503 5e-73
328705984572 PREDICTED: embryonic polarity protein do 0.506 0.615 0.446 2e-71
>gi|242022178|ref|XP_002431518.1| embryonic polarity dorsal, putative [Pediculus humanus corporis] gi|212516812|gb|EEB18780.1| embryonic polarity dorsal, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 260/807 (32%), Positives = 377/807 (46%), Gaps = 230/807 (28%)

Query: 36  SRRP--YIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLV 92
           SRRP  Y++I+EQP SK +RFRYECEGRSAGSI G NST E K+YP I I  + G A +V
Sbjct: 36  SRRPRAYVKIIEQPASKALRFRYECEGRSAGSIPGVNSTPENKTYPGIQIVGHNGRAVVV 95

Query: 93  VSCVSKDSPYRSHPHKLVSKDNCTNGIFCATLLEGDMTYSFTNLGIQCMKKKDI-QAFRL 151
           VSCV+KD+PYR HPH LV K+ C+ G+ C   +  D T +F+NLGIQC+KKKDI +A ++
Sbjct: 96  VSCVTKDAPYRPHPHNLVGKEGCSRGV-CTLKMNSD-TITFSNLGIQCVKKKDIEEALKV 153

Query: 152 YLQFCQRPFNSEKNSAWTLLGVMGFNNR---DNLDLNAVRLCFQAYL--PKDKDNVIKLE 206
             +    PF +            GF+++    ++DLN+VRLCFQ +L  PK ++  I L 
Sbjct: 154 REEIRVDPFRT------------GFSHKVQPSSIDLNSVRLCFQVFLEGPKKEEFTIPLR 201

Query: 207 PVVSDIIYDAKTYSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVW 266
           P+VSD IYD K  SDLTI  LS  SA V G  ++I+LC+KV K+DI++RFYEE+DG + W
Sbjct: 202 PIVSDPIYDKKAMSDLTICKLSDCSASVAGGKEIILLCEKVAKEDIQIRFYEERDGDLFW 261

Query: 267 D--ERVKTLEVHKQYAIVLKTPAYKSFEINDPVHVKIQLVTKKD--ISEPYNFMLTPLDS 322
           +     +  +VHKQ AI  +TP YK+ ++  PV V +QL    D  +SE   F   PLDS
Sbjct: 262 EGLGDFQPTQVHKQVAISFRTPKYKNIDVEKPVKVWVQLRRPSDGAVSESVPFQFIPLDS 321

Query: 323 GRPIFWRYRK---------------NKAQPLA-------LVNLFQNTMTQ---------- 350
           GR  FW  ++               N+  PL          +L  N++ +          
Sbjct: 322 GRATFWSLKRVLSKKGDYNTFSKILNENAPLTPETQKRKFESLTANSVCEGKKPLLERPD 381

Query: 351 ---------------FVPGEEKKISQDEQIVSAEPIKEKENDYARVDKSVNINMKPHVTF 395
                           VP ++      + +   + ++  E +  R +    IN K  +  
Sbjct: 382 FGNRKDSLISGGSLVVVPNQDNSTMDSKTVAKTQNLERLEQENPRNNF---INDKESMRT 438

Query: 396 SQHDTDMETNQVPDVLFDTKEKIDERFEELLNEVSNLKDTLEEKNDFLLIEDSNNAVITL 455
             + +  E+N+ PD ++++   +++RF +  NE+  +++  E  ++    +  N+ +  +
Sbjct: 439 GNNQSIHESNKRPDEVYNS--NVEDRFSQ--NEIKGIQNNSEPNDNS---QSFNDLITQV 491

Query: 456 DELDDLNNNVNESSVTIEEVHEFPKEHLGQRT-------EGYGSYSSLQLAMKNQYFIDR 508
            ELD++     E  +     H     HL   +           +Y+SLQLAMKN      
Sbjct: 492 AELDEIYAETREKLIL---SHPELDNHLENMSVDCRDSFRDNQTYTSLQLAMKNPI---E 545

Query: 509 NSGGECYEDVLPPQDIPTPPPEVATPPVKPVALSNVKVVIPPASKVTTPPPRPPSHTKPN 568
           +    CYEDV                PV    L N+                       N
Sbjct: 546 SMESRCYEDV----------------PVIQGPLINI-----------------------N 566

Query: 569 LATLQRKSTSDKFDSVSTHDDNIPPLPPKRSRK--------SGLDKNLPPVPKY----KS 616
              L  K        +S+ ++ +PPLPPKR +K        S L K+LP  P+     ++
Sbjct: 567 ENKLMSK--------MSSMEEKLPPLPPKRVKKTPPRRPDDSPLHKDLPKTPESTKTKQN 618

Query: 617 FFHKLFFKSKSK--------------------SKPATPR-----ERSLSIDSRKVGGGGS 651
            F KL F SK+K                     KPA+P      + SL++   K     S
Sbjct: 619 LFQKL-FSSKNKVPNSVKMKTSQSSESLKSADHKPASPNTLNTSKSSLNVGENKTANEKS 677

Query: 652 IN---------------------DDVM---------------------------LTEAEH 663
           +N                     DD+                            LTEAE+
Sbjct: 678 LNKWFHQSLENQPNKDGFAVSSPDDLTAKTEKDQVEKESEGYLLTRDDLELGMDLTEAEN 737

Query: 664 YALYTSVAPHATQSEFDEASFYYSPVE 690
           YALYTS+APHA+ +E DE SFYYSPVE
Sbjct: 738 YALYTSIAPHASMTELDEISFYYSPVE 764

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|58202307|gb|AAW67215.1| Dorsal isoform 1-B [Aedes aegypti] Back     alignment and taxonomy information
>gi|170032417|ref|XP_001844078.1| embryonic polarity protein dorsal [Culex quinquefasciatus] gi|167872364|gb|EDS35747.1| embryonic polarity protein dorsal [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|156891045|gb|ABU96699.1| dorsal 1B [Rhodnius prolixus] Back     alignment and taxonomy information
>gi|156891043|gb|ABU96698.1| dorsal 1A [Rhodnius prolixus] Back     alignment and taxonomy information
>gi|156891047|gb|ABU96700.1| dorsal 1C [Rhodnius prolixus] Back     alignment and taxonomy information
>gi|307196757|gb|EFN78216.1| Embryonic polarity protein dorsal [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|283484000|ref|NP_001164477.1| dorsal protein isoform B [Apis mellifera] gi|30351108|gb|AAP23056.1| dorsal protein splice variant B [Apis mellifera] Back     alignment and taxonomy information
>gi|157116697|ref|XP_001652840.1| embryonic polarity dorsal [Aedes aegypti] gi|58202305|gb|AAW67214.1| Dorsal isoform 1-A [Aedes aegypti] gi|108876363|gb|EAT40588.1| AAEL007696-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|328705984|ref|XP_001949498.2| PREDICTED: embryonic polarity protein dorsal-like [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query695
FB|FBgn0260632 999 dl "dorsal" [Drosophila melano 0.558 0.388 0.387 7.2e-82
ZFIN|ZDB-GENE-040825-4588 rela "v-rel reticuloendothelio 0.382 0.452 0.415 5.1e-51
UNIPROTKB|P16236598 REL "Proto-oncogene c-Rel" [Ga 0.417 0.484 0.406 7.4e-50
UNIPROTKB|F1NLA6598 REL "Proto-oncogene c-Rel" [Ga 0.417 0.484 0.403 1.2e-49
UNIPROTKB|F1P3A3486 REL "Proto-oncogene c-Rel" [Ga 0.417 0.596 0.403 1.2e-49
UNIPROTKB|F1P3A5596 REL "Proto-oncogene c-Rel" [Ga 0.417 0.486 0.403 1.2e-49
UNIPROTKB|B0LXP3553 RELA "Uncharacterized protein" 0.379 0.477 0.411 5.3e-49
UNIPROTKB|A1XG22551 RELA "NF-kappaB transcription 0.379 0.479 0.411 1.8e-48
UNIPROTKB|Q04864619 REL "Proto-oncogene c-Rel" [Ho 0.446 0.500 0.387 2.9e-48
MGI|MGI:103290549 Rela "v-rel reticuloendothelio 0.379 0.480 0.411 2.9e-48
FB|FBgn0260632 dl "dorsal" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 631 (227.2 bits), Expect = 7.2e-82, Sum P(5) = 7.2e-82
 Identities = 165/426 (38%), Positives = 234/426 (54%)

Query:    37 RRPYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSC 95
             ++PY++I EQP  K +RFRYECEGRSAGSI G NST E K+YP I I  Y G A +VVSC
Sbjct:    45 KKPYVKITEQPAGKALRFRYECEGRSAGSIPGVNSTPENKTYPTIEIVGYKGRAVVVVSC 104

Query:    96 VSKDSPYRSHPHKLVSKDNCTNGIFCATLLEGDMTYSFTNLGIQCMKKKDIQA-FRLYLQ 154
             V+KD+PYR HPH LV K+ C  G+    +    M   F+NLGIQC+KKKDI+A  +   +
Sbjct:   105 VTKDTPYRPHPHNLVGKEGCKKGVCTLEINSETMRAVFSNLGIQCVKKKDIEAALKAREE 164

Query:   155 FCQRPFNSEKNSAWTLLGVMGFNNR---DNLDLNAVRLCFQAYLPKDKDN--VIKLEPVV 209
                 PF +            GF++R    ++DLN+VRLCFQ ++  ++       L PVV
Sbjct:   165 IRVDPFKT------------GFSHRFQPSSIDLNSVRLCFQVFMESEQKGRFTSPLPPVV 212

Query:   210 SDIIYDAKTYSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDE- 268
             S+ I+D K  SDL I  L   SA V G+ ++I+LC+KV K+DI VRF+EE++G  VW+  
Sbjct:   213 SEPIFDKKAMSDLVICRLCSCSATVFGNTQIILLCEKVAKEDISVRFFEEKNGQSVWEAF 272

Query:   269 -RVKTLEVHKQYAIVLKTPAYKSFEINDPVHVKIQLVTKKD--ISEPYNFMLTPLDSGRP 325
                +  +VHKQ AI  KTP Y + +I +P  V IQL    D   SE   F   P+DSG+ 
Sbjct:   273 GDFQHTDVHKQTAITFKTPRYHTLDITEPAKVFIQLRRPSDGVTSEALPFEYVPMDSGKH 332

Query:   326 IFWR-YRKNKAQPLALVNLFQNTMTQFVPGEEKKISQDEQIVSAEPIKEKENDYARVDKS 384
              FW  +R  K +P    +LFQ    Q +  + K+  Q   I   +    K +    +   
Sbjct:   333 TFWNLHRHLKRKPDE--DLFQ----QILRLDAKREVQPPTIEVIDLDTPKIDVQREIPSE 386

Query:   385 VNINMKPHVTFSQHDTDMETNQ-VPDVLFDTKEKID-ERF--EELLNEVSNLKDTLEEKN 440
             +  N   H    Q +  +E  Q V    +  ++ +  E++  E+ L +   L+  LE++ 
Sbjct:   387 MEFN---HEESQQSEPALEQEQSVQQEQYTQEQSLQQEQYTQEQSLQQEQYLQQ-LEQQQ 442

Query:   441 DFLLIE 446
              F L E
Sbjct:   443 SFQLEE 448
GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA
GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA
GO:0008358 "maternal determination of anterior/posterior axis, embryo" evidence=IMP
GO:0006955 "immune response" evidence=IEP;NAS;TAS
GO:0006952 "defense response" evidence=NAS;TAS
GO:0005737 "cytoplasm" evidence=NAS;IDA;TAS
GO:0005634 "nucleus" evidence=IC;NAS;IDA;TAS
GO:0070491 "repressing transcription factor binding" evidence=IPI
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;NAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS
GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA;TAS
GO:0008354 "germ cell migration" evidence=TAS
GO:0009952 "anterior/posterior pattern specification" evidence=TAS
GO:0007369 "gastrulation" evidence=NAS
GO:0016015 "morphogen activity" evidence=NAS
GO:0003677 "DNA binding" evidence=NAS
GO:0005515 "protein binding" evidence=IPI
GO:0009950 "dorsal/ventral axis specification" evidence=TAS
GO:0070379 "high mobility group box 1 binding" evidence=IPI
GO:0009953 "dorsal/ventral pattern formation" evidence=NAS
GO:0007501 "mesodermal cell fate specification" evidence=TAS
GO:0001715 "ectodermal cell fate specification" evidence=TAS
GO:0008063 "Toll signaling pathway" evidence=NAS;TAS
GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=TAS
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA;TAS
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=NAS;TAS
GO:0007398 "ectoderm development" evidence=NAS
GO:0007498 "mesoderm development" evidence=NAS
GO:0007419 "ventral cord development" evidence=NAS
GO:0007507 "heart development" evidence=NAS
GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IGI
GO:0031594 "neuromuscular junction" evidence=IDA
GO:0043565 "sequence-specific DNA binding" evidence=IDA
GO:0035006 "melanization defense response" evidence=IMP
GO:0010004 "gastrulation involving germ band extension" evidence=TAS
GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IMP
GO:0042387 "plasmatocyte differentiation" evidence=IMP
GO:0035206 "regulation of hemocyte proliferation" evidence=IDA
GO:0010629 "negative regulation of gene expression" evidence=IDA
GO:0048935 "peripheral nervous system neuron development" evidence=IMP
ZFIN|ZDB-GENE-040825-4 rela "v-rel reticuloendotheliosis viral oncogene homolog A" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P16236 REL "Proto-oncogene c-Rel" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NLA6 REL "Proto-oncogene c-Rel" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3A3 REL "Proto-oncogene c-Rel" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3A5 REL "Proto-oncogene c-Rel" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|B0LXP3 RELA "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A1XG22 RELA "NF-kappaB transcription factor p65 subunit" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q04864 REL "Proto-oncogene c-Rel" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:103290 Rela "v-rel reticuloendotheliosis viral oncogene homolog A (avian)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query695
pfam00554169 pfam00554, RHD, Rel homology domain (RHD) 4e-59
cd07887173 cd07887, RHD-n_Dorsal_Dif, N-terminal sub-domain o 2e-56
cd07827174 cd07827, RHD-n, N-terminal sub-domain of the Rel h 1e-55
cd07885169 cd07885, RHD-n_RelA, N-terminal sub-domain of the 8e-44
cd07883197 cd07883, RHD-n_NFkB, N-terminal sub-domain of the 1e-42
cd07933172 cd07933, RHD-n_c-Rel, N-terminal sub-domain of the 2e-40
cd07886172 cd07886, RHD-n_RelB, N-terminal sub-domain of the 6e-40
cd07935202 cd07935, RHD-n_NFkB1, N-terminal sub-domain of the 4e-30
cd07934185 cd07934, RHD-n_NFkB2, N-terminal sub-domain of the 4e-28
cd01177102 cd01177, IPT_NFkappaB, IPT domain of the transcrip 8e-25
cd07884159 cd07884, RHD-n_Relish, N-terminal sub-domain of th 3e-22
cd00602101 cd00602, IPT_TF, IPT domain of eukaryotic transcri 4e-19
smart0042990 smart00429, IPT, ig-like, plexins, transcription f 1e-04
>gnl|CDD|201301 pfam00554, RHD, Rel homology domain (RHD) Back     alignment and domain information 
 Score =  196 bits (500), Expect = 4e-59
 Identities = 85/178 (47%), Positives = 111/178 (62%), Gaps = 13/178 (7%)

Query: 41  IEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKD 99
           +EI+EQPK + +RFRY+CEGRSAGSI G +ST   K++P + I NY G A + VS V+KD
Sbjct: 1   LEIVEQPKQRGMRFRYKCEGRSAGSIPGESSTRSKKTFPTVQICNYDGPAVIRVSLVTKD 60

Query: 100 SPYRSHPHKLVSKDNCTNGIFCATLLEGDMTYSFTNLGIQCMKKKDI-QAFRLYLQFCQR 158
            P+R HPH LV KD C +G+    L   DM  SF NLGIQC+KKKD+ +A +  ++    
Sbjct: 61  EPHRPHPHSLVGKD-CKDGVCEVELGPEDMVASFQNLGIQCVKKKDVEEALKERIELNID 119

Query: 159 PFNSEKNSAWTLLGVMGFNNRDNLDLNAVRLCFQAYLPKDKDN-VIKLEPVVSDIIYD 215
           PFN    +              ++DLN VRLCFQA+LP  + N    L PVVS+ IYD
Sbjct: 120 PFNVGFEAL---------RQIKDMDLNVVRLCFQAFLPDTRGNFTTPLPPVVSNPIYD 168

Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See pfam01833) that binds to DNA. Length = 169
>gnl|CDD|143647 cd07887, RHD-n_Dorsal_Dif, N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Dorsal Back     alignment and domain information
>gnl|CDD|143640 cd07827, RHD-n, N-terminal sub-domain of the Rel homology domain (RHD) Back     alignment and domain information
>gnl|CDD|143645 cd07885, RHD-n_RelA, N-terminal sub-domain of the Rel homology domain (RHD) of RelA Back     alignment and domain information
>gnl|CDD|143643 cd07883, RHD-n_NFkB, N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of kappa light polypeptide gene enhancer in B-cells (NF-kappa B) Back     alignment and domain information
>gnl|CDD|143649 cd07933, RHD-n_c-Rel, N-terminal sub-domain of the Rel homology domain (RHD) of c-Rel Back     alignment and domain information
>gnl|CDD|143646 cd07886, RHD-n_RelB, N-terminal sub-domain of the Rel homology domain (RHD) of the reticuloendotheliosis viral oncogene homolog B (RelB) protein Back     alignment and domain information
>gnl|CDD|143651 cd07935, RHD-n_NFkB1, N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of kappa B1 (NF-kappa B1) Back     alignment and domain information
>gnl|CDD|143650 cd07934, RHD-n_NFkB2, N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor kappa B2 (NF-kappa B2) Back     alignment and domain information
>gnl|CDD|238582 cd01177, IPT_NFkappaB, IPT domain of the transcription factor NFkappaB and related transcription factors Back     alignment and domain information
>gnl|CDD|143644 cd07884, RHD-n_Relish, N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Relish Back     alignment and domain information
>gnl|CDD|238336 cd00602, IPT_TF, IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa) Back     alignment and domain information
>gnl|CDD|214657 smart00429, IPT, ig-like, plexins, transcription factors Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 695
cd07885169 RHD-n_RelA N-terminal sub-domain of the Rel homolo 100.0
cd07933172 RHD-n_c-Rel N-terminal sub-domain of the Rel homol 100.0
cd07887173 RHD-n_Dorsal_Dif N-terminal sub-domain of the Rel 100.0
cd07886172 RHD-n_RelB N-terminal sub-domain of the Rel homolo 100.0
cd07934185 RHD-n_NFkB2 N-terminal sub-domain of the Rel homol 100.0
cd07827174 RHD-n N-terminal sub-domain of the Rel homology do 100.0
cd07883197 RHD-n_NFkB N-terminal sub-domain of the Rel homolo 100.0
cd07935202 RHD-n_NFkB1 N-terminal sub-domain of the Rel homol 100.0
PF00554169 RHD: Rel homology domain (RHD); InterPro: IPR01153 100.0
cd07884159 RHD-n_Relish N-terminal sub-domain of the Rel homo 100.0
cd07927161 RHD-n_NFAT_like N-terminal sub-domain of the Rel h 100.0
cd07882161 RHD-n_TonEBP N-terminal sub-domain of the Rel homo 100.0
cd01177102 IPT_NFkappaB IPT domain of the transcription facto 100.0
cd01178101 IPT_NFAT IPT domain of the NFAT family of transcri 100.0
cd07881175 RHD-n_NFAT N-terminal sub-domain of the Rel homolo 100.0
cd00602101 IPT_TF IPT domain of eukaryotic transcription fact 100.0
cd0010289 IPT Immunoglobulin-like fold, Plexins, Transcripti 98.59
smart0042990 IPT ig-like, plexins, transcription factors. 98.59
cd0117585 IPT_COE IPT domain of the COE family (Col/Olf-1/EB 97.88
cd0060390 IPT_PCSR IPT domain of Plexins and Cell Surface Re 97.21
PF0183385 TIG: IPT/TIG domain; InterPro: IPR002909 This fami 96.44
cd0118094 IPT_plexin_repeat1 First repeat of the IPT domain 95.74
cd0117985 IPT_plexin_repeat2 Second repeat of the IPT domain 94.81
cd0117697 IPT_RBP-Jkappa IPT domain of the recombination sig 94.79
cd0118199 IPT_plexin_repeat3 Third repeat of the IPT domain 89.92
>cd07885 RHD-n_RelA N-terminal sub-domain of the Rel homology domain (RHD) of RelA Back     alignment and domain information 
Probab=100.00  E-value=4.7e-70  Score=520.14  Aligned_cols=166  Identities=49%  Similarity=0.841  Sum_probs=160.0

Q ss_pred             ceEEEEecCCcc-cccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceEEEEEEEecCCCCCccccccccccCCCC
Q psy12708         39 PYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCTN  117 (695)
Q Consensus        39 PyL~IvEQPkqr-fRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvVsLVTkDdp~RPHPH~LVGKd~Ckd  117 (695)
                      |||+|+|||+|| |||||+|||+|||||||++|++++||||||||+||.|+|+|+|||||+|+|+|||||+||||+ |++
T Consensus         1 P~l~I~EQPk~r~~RFRY~cEgrSaGsipG~~St~~~KT~Pti~i~nY~G~a~V~vslVT~d~p~rpHpH~LVGK~-C~~   79 (169)
T cd07885           1 PYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINNYTGPGRVRISLVTKDPPHKPHPHELVGKD-CKD   79 (169)
T ss_pred             CcEEEEecCCcCcceEEecccCCCCCCCCcCcCCCCCCcCCeEEEecCcCCEEEEEEEEeCCCCCCCCcchhcccc-cCC
Confidence            899999999999 999999999999999999999999999999999999999999999999999999999999996 999


Q ss_pred             CcEEEEecCCCeEEEEecceeeEEechhHH-HHHHHHHhhcCCCCccccchhhhhcccCcCC-cCCCCCCeeeEEEEEEe
Q psy12708        118 GIFCATLLEGDMTYSFTNLGIQCMKKKDIQ-AFRLYLQFCQRPFNSEKNSAWTLLGVMGFNN-RDNLDLNAVRLCFQAYL  195 (695)
Q Consensus       118 GVceV~L~P~dMtasFdNLGIqcVrKKDVE-aLk~Rkel~~dPf~t~~n~~~~l~~dig~e~-aK~iDLn~VRLcFqafL  195 (695)
                      |+|++.|+|++|+++|+|||||||+||||+ +|+.|+++++|||++            ++++ +++||||+|||||||||
T Consensus        80 Gvc~v~v~p~~~~~~F~nLGIqcV~KKdv~e~L~~R~~~~~~pf~~------------~~~~~~~~iDLn~VRLcFqafl  147 (169)
T cd07885          80 GYYEAELSPDRCIHSFQNLGIQCVKKRDLEQAVSQRIQTNNNPFNV------------PIEEQRADYDLNAVRLCFQVTV  147 (169)
T ss_pred             cEEEEEeCCCCcEEEeccceeEEEEeccHHHHHHHHHHhcCCCCcc------------chhHhhcccchhhEEEEEEEEE
Confidence            999999999999999999999999999999 999999999999987            3333 78999999999999999


Q ss_pred             eCCCCCeEeeccccccccccCC
Q psy12708        196 PKDKDNVIKLEPVVSDIIYDAK  217 (695)
Q Consensus       196 pd~~G~t~~L~PVvS~PIyDsK  217 (695)
                      +|++|++++|+||+|+||||++
T Consensus       148 ~d~~G~~~~l~PVvS~pIyD~~  169 (169)
T cd07885         148 RDPSGRLLPLPPVLSQPIYDNR  169 (169)
T ss_pred             ECCCCCEEeCCCeeccccccCC
Confidence            9999999999999999999986

Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD domain of the RelA family of transcription factors, categorized as a class II member of the NF-kappa B family. In class II NF-kappa Bs, the RHD domain co-occurs with a C-terminal transactivation domain (TAD). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large number of genes, and is involved in processes such as adaptive and innate immunity, stress response, inflammation, cell adhesion, proliferation and apoptosis. The cytosolic NF-kappa B complex is activated via phosphorylation of the ankyrin-repeat containing inhibitory protein I-kappa B, which
>cd07933 RHD-n_c-Rel N-terminal sub-domain of the Rel homology domain (RHD) of c-Rel Back     alignment and domain information
>cd07887 RHD-n_Dorsal_Dif N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Dorsal Back     alignment and domain information
>cd07886 RHD-n_RelB N-terminal sub-domain of the Rel homology domain (RHD) of the reticuloendotheliosis viral oncogene homolog B (RelB) protein Back     alignment and domain information
>cd07934 RHD-n_NFkB2 N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor kappa B2 (NF-kappa B2) Back     alignment and domain information
>cd07827 RHD-n N-terminal sub-domain of the Rel homology domain (RHD) Back     alignment and domain information
>cd07883 RHD-n_NFkB N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of kappa light polypeptide gene enhancer in B-cells (NF-kappa B) Back     alignment and domain information
>cd07935 RHD-n_NFkB1 N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of kappa B1 (NF-kappa B1) Back     alignment and domain information
>PF00554 RHD: Rel homology domain (RHD); InterPro: IPR011539 The Rel homology domain (RHD) is found in a family of eukaryotic transcription factors, which includes NF-kappaB, Dorsal, Relish, NFAT, among others Back     alignment and domain information
>cd07884 RHD-n_Relish N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Relish Back     alignment and domain information
>cd07927 RHD-n_NFAT_like N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins and similar proteins Back     alignment and domain information
>cd07882 RHD-n_TonEBP N-terminal sub-domain of the Rel homology domain (RHD) of tonicity-responsive enhancer binding protein (TonEBP) Back     alignment and domain information
>cd01177 IPT_NFkappaB IPT domain of the transcription factor NFkappaB and related transcription factors Back     alignment and domain information
>cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors Back     alignment and domain information
>cd07881 RHD-n_NFAT N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins Back     alignment and domain information
>cd00602 IPT_TF IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa) Back     alignment and domain information
>cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT) Back     alignment and domain information
>smart00429 IPT ig-like, plexins, transcription factors Back     alignment and domain information
>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors Back     alignment and domain information
>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins Back     alignment and domain information
>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold Back     alignment and domain information
>cd01180 IPT_plexin_repeat1 First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) Back     alignment and domain information
>cd01179 IPT_plexin_repeat2 Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) Back     alignment and domain information
>cd01176 IPT_RBP-Jkappa IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa) Back     alignment and domain information
>cd01181 IPT_plexin_repeat3 Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query695
1gji_A275 Crystal Structure Of C-Rel Bound To Dna Length = 27 3e-51
2o61_A540 Crystal Structure Of Nfkb, Irf7, Irf3 Bound To The 5e-50
1ikn_A286 IkappabalphaNF-Kappab Complex Length = 286 8e-50
2i9t_A279 Structure Of Nf-Kb P65-P50 Heterodimer Bound To Prd 9e-50
1ram_A273 A Novel Dna Recognition Mode By Nf-Kb P65 Homodimer 9e-50
1nfi_A301 I-Kappa-B-AlphaNF-Kappa-B Complex Length = 301 2e-49
3do7_A296 X-Ray Structure Of A Nf-Kb P52RELBDNA COMPLEX Lengt 5e-49
1vkx_A273 Crystal Structure Of The Nfkb P50P65 HETERODIMER CO 6e-49
1le5_A274 Crystal Structure Of A Nf-Kb Heterodimer Bound To A 6e-49
2v2t_A288 X-Ray Structure Of A Nf-Kb P50-Relb-Dna Complex Len 1e-48
1ooa_A326 Crystal Structure Of Nf-Kb(P50)2 Complexed To A Hig 2e-47
2v2t_B326 X-Ray Structure Of A Nf-Kb P50-Relb-Dna Complex Len 2e-47
1nfk_A325 Structure Of The Nuclear Factor Kappa-B (Nf-Kb) P50 2e-47
1vkx_B312 Crystal Structure Of The Nfkb P50P65 HETERODIMER CO 4e-47
1le5_B313 Crystal Structure Of A Nf-Kb Heterodimer Bound To A 4e-47
2o61_B314 Crystal Structure Of Nfkb, Irf7, Irf3 Bound To The 8e-47
1svc_P365 Nfkb P50 Homodimer Bound To Dna Length = 365 4e-46
3do7_B293 X-Ray Structure Of A Nf-Kb P52RELBDNA COMPLEX Lengt 2e-41
1a3q_A285 Human Nf-Kappa-B P52 Bound To Dna Length = 285 2e-40
1bvo_A175 Dorsal Homologue Gambif1 Bound To Dna Length = 175 4e-40
1u3j_A106 Crystal Stucture Of Mlav Mutant Of Dimerisation Dom 4e-16
1u3y_A106 Crystal Stucture Of Ilac Mutant Of Dimerisation Dom 4e-16
1ikn_C119 IkappabalphaNF-Kappab Complex Length = 119 6e-16
1bfs_A106 Structure Of Nf-Kb P50 Homodimer Bound To A Kb Site 6e-16
1nfi_B107 I-Kappa-B-AlphaNF-Kappa-B Complex Length = 107 7e-16
1u42_A106 Crystal Stucture Of Mlam Mutant Of Dimerisation Dom 7e-16
3jv4_B115 Crystal Structure Of The Dimerization Domains P50 A 7e-16
1u3z_A106 Crystal Stucture Of Mlac Mutant Of Dimerisation Dom 9e-16
1u41_A106 Crystal Stucture Of Ylgv Mutant Of Dimerisation Dom 2e-15
1u36_A106 Crystal Stucture Of Wlac Mutant Of Dimerisation Dom 2e-15
3jv5_A104 Crystal Structure Of The Dimerization Domains P52 H 4e-14
3jv0_A101 Crystal Structure Of A Mutant Of Relb Dimerization 5e-14
3jss_A101 Crystal Structure Of A Mutant Relb Dimerization Dom 1e-13
3jv6_B107 Crystal Structure Of The Dimerization Domains P52 A 2e-13
3juz_A101 Crystal Structure Of A Mutant Of Relb Dimerization 2e-13
3jv4_A101 Crystal Structure Of The Dimerization Domains P50 A 5e-11
1zk9_A110 Nf-Kb Relb Forms An Intertwined Homodimer Length = 5e-11
1zka_A110 Nf-Kb Relb Forms An Intertwined Homodimer, Y300s Mu 6e-11
1bft_A101 Structure Of Nf-Kb P50 Homodimer Bound To A Kb Site 1e-09
1k3z_A136 X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi 2e-09
1my5_A114 Nf-Kappab P65 Subunit Dimerization Domain Homodimer 2e-09
1my7_A114 Nf-Kappab P65 Subunit Dimerization Domain Homodimer 2e-08
>pdb|1GJI|A Chain A, Crystal Structure Of C-Rel Bound To Dna Length = 275 Back     alignment and structure 
Iteration: 1

 Score =  200 bits (508), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 122/290 (42%), Positives = 168/290 (57%), Gaps = 25/290 (8%)
Query: 39  PYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVS 97
           PYIEI EQP+ + +RFRY+CEGRSAGSI G +ST   K++P I I NY G   +  + V+
Sbjct: 1   PYIEIFEQPRQRGMRFRYKCEGRSAGSIPGEHSTDNNKTFPSIQILNYFGKVKIRTTLVT 60
Query: 98  KDSPYRSHPHKLVSKDNCTNGIFCATLLEGDMTYSFTNLGIQCMKKKDI-QAFRLYLQFC 156
           K+ PY+ HPH LV KD C +G + A         SF NLGIQC+KKKD+ ++  L +   
Sbjct: 61  KNEPYKPHPHDLVGKD-CRDGYYEAEFGPERRVLSFQNLGIQCVKKKDLKESISLRISKK 119
Query: 157 QRPFNSEKNSAWTLLGVMGFNNRDNLDLNAVRLCFQAYLPKDKDN-VIKLEPVVSDIIYD 215
             PFN  +            +N D  DLN VRLCFQA+LP +  N  + L P++S+ IYD
Sbjct: 120 INPFNVPEEQ---------LHNIDEYDLNVVRLCFQAFLPDEHGNYTLALPPLISNPIYD 170
Query: 216 --AKTYSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDER--VK 271
             A   ++L I  ++     V G  ++ ILCDKV KDDIEVRF  +      W+ +    
Sbjct: 171 NRAPNTAELRICRVNKNCGSVKGGDEIFILCDKVQKDDIEVRFVLDN-----WEAKGSFS 225
Query: 272 TLEVHKQYAIVLKTPAYKSFEINDPVHVKIQLVTKKD--ISEPYNFMLTP 319
             +VH+Q AIV +TP +   +I +P+ VK+QL    D  +SEP +F   P
Sbjct: 226 QADVHRQVAIVFRTPPFLR-DITEPITVKMQLRRPSDQEVSEPMDFRYLP 274
>pdb|2O61|A Chain A, Crystal Structure Of Nfkb, Irf7, Irf3 Bound To The Interferon-B Enhancer Length = 540 Back     alignment and structure
>pdb|1IKN|A Chain A, IkappabalphaNF-Kappab Complex Length = 286 Back     alignment and structure
>pdb|2I9T|A Chain A, Structure Of Nf-Kb P65-P50 Heterodimer Bound To Prdii Element Of B-Interferon Promoter Length = 279 Back     alignment and structure
>pdb|1RAM|A Chain A, A Novel Dna Recognition Mode By Nf-Kb P65 Homodimer Length = 273 Back     alignment and structure
>pdb|1NFI|A Chain A, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 301 Back     alignment and structure
>pdb|3DO7|A Chain A, X-Ray Structure Of A Nf-Kb P52RELBDNA COMPLEX Length = 296 Back     alignment and structure
>pdb|1VKX|A Chain A, Crystal Structure Of The Nfkb P50P65 HETERODIMER COMPLEXED To The Immunoglobulin Kb Dna Length = 273 Back     alignment and structure
>pdb|1LE5|A Chain A, Crystal Structure Of A Nf-Kb Heterodimer Bound To An Ifnb-Kb Length = 274 Back     alignment and structure
>pdb|2V2T|A Chain A, X-Ray Structure Of A Nf-Kb P50-Relb-Dna Complex Length = 288 Back     alignment and structure
>pdb|1OOA|A Chain A, Crystal Structure Of Nf-Kb(P50)2 Complexed To A High- Affinity Rna Aptamer Length = 326 Back     alignment and structure
>pdb|2V2T|B Chain B, X-Ray Structure Of A Nf-Kb P50-Relb-Dna Complex Length = 326 Back     alignment and structure
>pdb|1NFK|A Chain A, Structure Of The Nuclear Factor Kappa-B (Nf-Kb) P50 Homodimer Length = 325 Back     alignment and structure
>pdb|1VKX|B Chain B, Crystal Structure Of The Nfkb P50P65 HETERODIMER COMPLEXED To The Immunoglobulin Kb Dna Length = 312 Back     alignment and structure
>pdb|1LE5|B Chain B, Crystal Structure Of A Nf-Kb Heterodimer Bound To An Ifnb-Kb Length = 313 Back     alignment and structure
>pdb|2O61|B Chain B, Crystal Structure Of Nfkb, Irf7, Irf3 Bound To The Interferon-B Enhancer Length = 314 Back     alignment and structure
>pdb|1SVC|P Chain P, Nfkb P50 Homodimer Bound To Dna Length = 365 Back     alignment and structure
>pdb|3DO7|B Chain B, X-Ray Structure Of A Nf-Kb P52RELBDNA COMPLEX Length = 293 Back     alignment and structure
>pdb|1A3Q|A Chain A, Human Nf-Kappa-B P52 Bound To Dna Length = 285 Back     alignment and structure
>pdb|1BVO|A Chain A, Dorsal Homologue Gambif1 Bound To Dna Length = 175 Back     alignment and structure
>pdb|1U3J|A Chain A, Crystal Stucture Of Mlav Mutant Of Dimerisation Domain Of Nf-Kb P50 Transcription Factor Length = 106 Back     alignment and structure
>pdb|1U3Y|A Chain A, Crystal Stucture Of Ilac Mutant Of Dimerisation Domain Of Nf-Kb P50 Transcription Factor Length = 106 Back     alignment and structure
>pdb|1IKN|C Chain C, IkappabalphaNF-Kappab Complex Length = 119 Back     alignment and structure
>pdb|1BFS|A Chain A, Structure Of Nf-Kb P50 Homodimer Bound To A Kb Site Length = 106 Back     alignment and structure
>pdb|1NFI|B Chain B, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 107 Back     alignment and structure
>pdb|1U42|A Chain A, Crystal Stucture Of Mlam Mutant Of Dimerisation Domain Of Nf-Kb P50 Transcription Factor Length = 106 Back     alignment and structure
>pdb|3JV4|B Chain B, Crystal Structure Of The Dimerization Domains P50 And Relb Length = 115 Back     alignment and structure
>pdb|1U3Z|A Chain A, Crystal Stucture Of Mlac Mutant Of Dimerisation Domain Of Nf-Kb P50 Transcription Factor Length = 106 Back     alignment and structure
>pdb|1U41|A Chain A, Crystal Stucture Of Ylgv Mutant Of Dimerisation Domain Of Nf-Kb P50 Transcription Factor Length = 106 Back     alignment and structure
>pdb|1U36|A Chain A, Crystal Stucture Of Wlac Mutant Of Dimerisation Domain Of Nf-Kb P50 Transcription Factor Length = 106 Back     alignment and structure
>pdb|3JV5|A Chain A, Crystal Structure Of The Dimerization Domains P52 Homodimer Length = 104 Back     alignment and structure
>pdb|3JV0|A Chain A, Crystal Structure Of A Mutant Of Relb Dimerization Domain(M6) Length = 101 Back     alignment and structure
>pdb|3JSS|A Chain A, Crystal Structure Of A Mutant Relb Dimerization Domain Length = 101 Back     alignment and structure
>pdb|3JV6|B Chain B, Crystal Structure Of The Dimerization Domains P52 And Relb Length = 107 Back     alignment and structure
>pdb|3JUZ|A Chain A, Crystal Structure Of A Mutant Of Relb Dimerization Domain(M5) Length = 101 Back     alignment and structure
>pdb|3JV4|A Chain A, Crystal Structure Of The Dimerization Domains P50 And Relb Length = 101 Back     alignment and structure
>pdb|1ZK9|A Chain A, Nf-Kb Relb Forms An Intertwined Homodimer Length = 110 Back     alignment and structure
>pdb|1ZKA|A Chain A, Nf-Kb Relb Forms An Intertwined Homodimer, Y300s Mutant Length = 110 Back     alignment and structure
>pdb|1BFT|A Chain A, Structure Of Nf-Kb P50 Homodimer Bound To A Kb Site Length = 101 Back     alignment and structure
>pdb|1K3Z|A Chain A, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 136 Back     alignment and structure
>pdb|1MY5|A Chain A, Nf-Kappab P65 Subunit Dimerization Domain Homodimer Length = 114 Back     alignment and structure
>pdb|1MY7|A Chain A, Nf-Kappab P65 Subunit Dimerization Domain Homodimer N202r Mutation Length = 114 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query695
1nfk_A325 Protein (nuclear factor kappa-B (NF-KB)); NF-KB P5 3e-80
1ikn_A286 P65, protein (NF-kappa-B P65 subunit); transcripti 6e-80
2v2t_A288 RELB, transcription factor RELB; 4-diphosphocytidy 1e-78
1gji_A275 C-REL protein, C-REL proto-oncogene protein; NF-KB 1e-78
1svc_P365 Protein (nuclear factor kappa-B (NF-KB)); DNA-bind 1e-78
2o61_A540 Transcription factor P65/interferon regulatory FA 2e-75
1a3q_A285 Protein (nuclear factor kappa-B P52); transcriptio 2e-74
1imh_C281 NF-AT5, tonebp, nuclear factor of activated T cell 2e-59
1p7h_L286 Nuclear factor of activated T-cells, cytoplasmic 2 2e-54
1bvo_A175 Transcription factor gambif1; REL protein, morphog 3e-53
1ikn_C119 P50D, protein (NF-kappa-B P50D subunit); transcrip 2e-31
1u36_A106 DNA-binding, nuclear factor NF-kappa-B P105 subuni 2e-30
1my7_A114 NF-kappab P65 (RELA) subunit; immunoglobulin, IG, 1e-28
1oy3_C136 Transcription factor P65; protein-protein complex, 3e-28
1zk9_A110 Transcription factor RELB; NF-KB, transcription fa 4e-28
2yrp_A114 Nuclear factor of activated T-cells, cytoplasmic 4 1e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
>1nfk_A Protein (nuclear factor kappa-B (NF-KB)); NF-KB P50, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 2v2t_B 1ooa_A 1lei_B* 1le9_B 1le5_B* 2i9t_B 1vkx_B* 3gut_B 2o61_B Length = 325 Back     alignment and structure
 Score =  257 bits (658), Expect = 3e-80
 Identities = 120/324 (37%), Positives = 158/324 (48%), Gaps = 31/324 (9%)

Query: 39  PYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVS 97
           PY++ILEQPK +  RFRY CEG S G + GA+S    KSYP++ I NYVG A ++V  V+
Sbjct: 2   PYLQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVT 61

Query: 98  KDSPYRSHPHKLVSKDNCTNGIFCATLLEGDMTYSFTNLGIQCMKKKDIQA--FRLYLQF 155
                  H H LV K  C +G+   T    DM   F NLGI  + KK +         + 
Sbjct: 62  NGKNIHLHAHSLVGKH-CEDGVCTVTAGPKDMVVGFANLGILHVTKKKVFETLEARMTEA 120

Query: 156 CQRPFNSEKNSAWTLLGVMGFNNRD--------------------NLDLNAVRLCFQAYL 195
           C R +N        L  +      D                     +DL+ VRL F A+L
Sbjct: 121 CIRGYNPGLLVHSDLAYLQAEGGGDRQLTDREKEIIRQAAVQQTKEMDLSVVRLMFTAFL 180

Query: 196 P-KDKDNVIKLEPVVSDIIYD--AKTYSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDI 252
           P        +LEPVVSD IYD  A   S+L I  +   +  V G  ++ +LCDKV KDDI
Sbjct: 181 PDSTGSFTRRLEPVVSDAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDI 240

Query: 253 EVRFYEEQDGVVVWDERVKTLE--VHKQYAIVLKTPAYKSFEINDPVHVKIQLVTKKD-- 308
           ++RFYEE++   VW+         VH+Q+AIV KTP YK   I  P  V +QL  K D  
Sbjct: 241 QIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDVNITKPASVFVQLRRKSDLE 300

Query: 309 ISEPYNFMLTPLDSGRPIFWRYRK 332
            SEP  F+  P    +    R R+
Sbjct: 301 TSEPKPFLYYPEIKDKEEVQRKRQ 324
>1ikn_A P65, protein (NF-kappa-B P65 subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 1nfi_A 2ram_A* 1ram_A* 2i9t_A 1lei_A* 1le9_A 1le5_A* 1vkx_A* 3gut_A Length = 286 Back     alignment and structure
>2v2t_A RELB, transcription factor RELB; 4-diphosphocytidyl-2C-methyl-D-erythritol, aquifex aeolicus, nucleotide-binding, isoprene biosynthesis; 3.05A {Mus musculus} PDB: 3do7_A Length = 288 Back     alignment and structure
>1gji_A C-REL protein, C-REL proto-oncogene protein; NF-KB/DNA complex, transcription factor, C-REL homodimer, transcription/DNA complex; 2.85A {Gallus gallus} SCOP: b.1.18.1 b.2.5.3 Length = 275 Back     alignment and structure
>1svc_P Protein (nuclear factor kappa-B (NF-KB)); DNA-binding, transcription regulation, activator, nuclear protein, phosphorylation, repeat, DNA; HET: DNA; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 Length = 365 Back     alignment and structure
>2o61_A Transcription factor P65/interferon regulatory FA 7/interferon regulatory factor...; protein-DNA complex, transcription-DNA complex; 2.80A {Homo sapiens} Length = 540 Back     alignment and structure
>1a3q_A Protein (nuclear factor kappa-B P52); transcription factor, immune response, DNA-protein complex, transcription/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 3do7_B 3jv6_B 3jv5_A Length = 285 Back     alignment and structure
>1imh_C NF-AT5, tonebp, nuclear factor of activated T cells 5; beta barrel, protein-DNA complex, double helix, DNA encirclement, transcription/DNA complex; 2.86A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 Length = 281 Back     alignment and structure
>1p7h_L Nuclear factor of activated T-cells, cytoplasmic 2; DNA binding protein, transcription regulation, activator, transcription/DNA complex; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 2o93_L 1a02_N* 1pzu_B 1owr_M 2as5_N 1s9k_C 3qrf_N 1nfa_A 1a66_A* Length = 286 Back     alignment and structure
>1bvo_A Transcription factor gambif1; REL protein, morphogen, immunity, development, insects, complex (transcription factor/DNA); HET: DNA; 2.70A {Anopheles gambiae} SCOP: b.2.5.3 Length = 175 Back     alignment and structure
>1ikn_C P50D, protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1 Length = 119 Back     alignment and structure
>1u36_A DNA-binding, nuclear factor NF-kappa-B P105 subunit; transcription factor, NF-KB, dimerization domain, intertwined folding; 1.89A {Mus musculus} SCOP: b.1.18.1 PDB: 1u3z_A 1u3y_A 3jv4_B 1bfs_A 1u3j_A 1u42_A 1u41_A 1nfi_B Length = 106 Back     alignment and structure
>1my7_A NF-kappab P65 (RELA) subunit; immunoglobulin, IG, beta-sandwich, beta-sheet, homodimerdna- binding, transcription regulation, activator; 1.49A {Mus musculus} SCOP: b.1.18.1 PDB: 1my5_A 1bft_A Length = 114 Back     alignment and structure
>1oy3_C Transcription factor P65; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: b.1.18.1 PDB: 1k3z_A Length = 136 Back     alignment and structure
>1zk9_A Transcription factor RELB; NF-KB, transcription factors, intertwined dimer; 2.18A {Mus musculus} PDB: 1zka_A 3jv6_A 3jv4_A 3jss_A 3juz_A 3jv0_A Length = 110 Back     alignment and structure
>2yrp_A Nuclear factor of activated T-cells, cytoplasmic 4; beta-sandwich, immunoglobulin-like fold, TIG domain, IPT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query695
1ikn_A286 P65, protein (NF-kappa-B P65 subunit); transcripti 100.0
1nfk_A325 Protein (nuclear factor kappa-B (NF-KB)); NF-KB P5 100.0
1svc_P365 Protein (nuclear factor kappa-B (NF-KB)); DNA-bind 100.0
1gji_A275 C-REL protein, C-REL proto-oncogene protein; NF-KB 100.0
1a3q_A285 Protein (nuclear factor kappa-B P52); transcriptio 100.0
2v2t_A288 RELB, transcription factor RELB; 4-diphosphocytidy 100.0
2o61_A540 Transcription factor P65/interferon regulatory FA 100.0
1imh_C281 NF-AT5, tonebp, nuclear factor of activated T cell 100.0
1p7h_L286 Nuclear factor of activated T-cells, cytoplasmic 2 100.0
1bvo_A175 Transcription factor gambif1; REL protein, morphog 100.0
1ikn_C119 P50D, protein (NF-kappa-B P50D subunit); transcrip 100.0
1oy3_C136 Transcription factor P65; protein-protein complex, 100.0
1my7_A114 NF-kappab P65 (RELA) subunit; immunoglobulin, IG, 100.0
1u36_A106 DNA-binding, nuclear factor NF-kappa-B P105 subuni 100.0
1zk9_A110 Transcription factor RELB; NF-KB, transcription fa 100.0
2yrp_A114 Nuclear factor of activated T-cells, cytoplasmic 4 100.0
3muj_A138 Transcription factor COE3; immunoglobulin like fol 96.65
2cxk_A95 Camta1, calmodulin binding transcription activator 96.39
3mlp_A402 Transcription factor COE1; transcription factor, p 96.0
3iag_C422 Recombining binding protein suppressor of hairless 85.82
1uad_C99 RSEC5, exocyst complex component SEC5; small GTP-b 83.53
>1ikn_A P65, protein (NF-kappa-B P65 subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 1nfi_A 2ram_A* 1ram_A* 2i9t_A 1lei_A* 1le9_A 1le5_A* 1vkx_A* 3gut_A Back     alignment and structure
Probab=100.00  E-value=2e-106  Score=821.35  Aligned_cols=277  Identities=43%  Similarity=0.724  Sum_probs=266.4

Q ss_pred             ceEEEEecCCcc-cccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceEEEEEEEecCCCCCccccccccccCCCC
Q psy12708         39 PYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNCTN  117 (695)
Q Consensus        39 PyL~IvEQPkqr-fRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvVsLVTkDdp~RPHPH~LVGKd~Ckd  117 (695)
                      |||+|+|||++| |||||+|||+|||||+|++|++++||||||||+||+|+|+|+|+|||+|+|+|||||+||||+ |++
T Consensus         1 P~l~I~eQP~~r~~RfRY~~EG~s~Gsi~G~~s~~~~kt~PtVkl~~y~g~a~i~vslvT~d~~~rpHpH~LvGk~-c~~   79 (286)
T 1ikn_A            1 PYVEIIEQPKQRGMRFRYKCEGRSAGSIPGERSTDTTKTHPTIKINGYTGPGTVRISLVTKDPPHRPHPHELVGKD-CRD   79 (286)
T ss_dssp             CEEEEEECBCCSSCCCEETTTCSCSCCCCBTTCCSSCCCCCEEEEESCCSSCEEEEEEECSSSSCCBCSSEEESTT-EET
T ss_pred             CCCEEEECCccccceeEEeecccCCCCccccccCCCCCcCCEEEEecCCCCEEEEEEEEECCCCCCCcceEeeccc-CCC
Confidence            899999999997 999999999999999999999999999999999999999999999999999999999999996 999


Q ss_pred             CcEEEEecCCCeEEEEecceeeEEechhHH-HHHHHHHhhcCCCCccccchhhhhcccCcCC-cCCCCCCeeeEEEEEEe
Q psy12708        118 GIFCATLLEGDMTYSFTNLGIQCMKKKDIQ-AFRLYLQFCQRPFNSEKNSAWTLLGVMGFNN-RDNLDLNAVRLCFQAYL  195 (695)
Q Consensus       118 GVceV~L~P~dMtasFdNLGIqcVrKKDVE-aLk~Rkel~~dPf~t~~n~~~~l~~dig~e~-aK~iDLn~VRLcFqafL  195 (695)
                      |+|++.|+|++|+++|+||||||+||+||+ +|++|.+.+++||++            |+++ +++||||+|||||||||
T Consensus        80 g~~~v~l~p~~~~~~f~~lGI~~vkkkdv~~~l~~R~~~~~~p~~~------------~~~~~~k~idln~VRL~Fq~~i  147 (286)
T 1ikn_A           80 GYYEADLCPDRSIHSFQNLGIQCVKKRDLEQAISQRIQTNNNPFHV------------PIEEQRGDYDLNAVRLCFQVTV  147 (286)
T ss_dssp             TEEEEECCTTCSEEECSCCEEEECCGGGHHHHHHHHHHTTCCTTCC------------CTTSCCSCCCTTEEEEEEEEEE
T ss_pred             CcEEEEECCCcceEEEeccceeeEeeccHHHHHHHHHHhcCCcccc------------chhhhhccccCcEEEEEEEEEE
Confidence            999999999999999999999999999999 999999999999987            5554 78999999999999999


Q ss_pred             eCCCCCeEeeccccccccccCCC--CCCceeEeecCcceeccCCceEEEeecCCCCCCceEEEEEccCCccCcee--ecc
Q psy12708        196 PKDKDNVIKLEPVVSDIIYDAKT--YSDLTIHTLSHVSAPVVGDMKMIILCDKVNKDDIEVRFYEEQDGVVVWDE--RVK  271 (695)
Q Consensus       196 pd~~G~t~~L~PVvS~PIyDsKs--asELkIcRmSk~SGsV~GGeEVfLLCdKVqKdDIkVrF~EeddG~~iWEa--~Fs  271 (695)
                      ++++|++++|+||+|+||||+|+  ++||+|||||++||||+||+|||||||||+|+||+|||||+     +||+  +|+
T Consensus       148 ~~~~G~~~~L~pV~S~PI~~~ks~~~~eL~I~r~s~~sg~v~GG~Ev~Llc~kv~K~di~V~F~e~-----~WE~~~~f~  222 (286)
T 1ikn_A          148 RDPAGRPLLLTPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGP-----GWEARGSFS  222 (286)
T ss_dssp             ECSSSSEEECCCEECCCEECCCC--CCCCCEEEESCSEEETTCCCEEEEEESCCCTTSCEEEEEET-----TEEEECBCC
T ss_pred             ECCCCCEEEeCCeEecccccCCCCCCCCCeEEEecCCccccCCCCEEEEEecccccCCCEEEEecc-----ceEEeeecC
Confidence            99999999999999999999997  59999999999999999999999999999999999999994     7999  999


Q ss_pred             ccccccceeEEEeCCCcCCCCCCCceEEEEEEEcCCC--CCCCccceeecCCCCChhhhHhhhh
Q psy12708        272 TLEVHKQYAIVLKTPAYKSFEINDPVHVKIQLVTKKD--ISEPYNFMLTPLDSGRPIFWRYRKN  333 (695)
Q Consensus       272 ~tDVHrQ~AIVFKTPPYrd~~It~PV~V~IqL~RpSD--tSEP~~FTY~P~~~d~~~i~rkrr~  333 (695)
                      ++||||||||||+||||+|++|++||+|+|||+|+||  +|+|++|||+|.+.|.++|.|||||
T Consensus       223 ~~dvh~Q~aIvf~tPpY~~~~I~~pV~V~i~L~r~sd~~~Sep~~FtY~P~~~~~~~~~~kr~r  286 (286)
T 1ikn_A          223 QADVHRQVAIVFRTPPYADPSLQAPVRVSMQLRRPSDRELSEPMEFQYLPDTDDRHRIEEKRKR  286 (286)
T ss_dssp             GGGBCTTSEEEEECCCCSCTTCSSCEEEEEEEECTTTCCBCCCEEEEEECCTTTTTTSCSCC--
T ss_pred             HHHhccceeEEEECCCCCCCCcCCCEEEEEEEEeCCCCCcCCCcCcEEecCccchhhhhhcccC
Confidence            9999999999999999999999999999999999999  9999999999999999999888764
>1nfk_A Protein (nuclear factor kappa-B (NF-KB)); NF-KB P50, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 2v2t_B 1ooa_A 1lei_B* 1le9_B 1le5_B* 2i9t_B 1vkx_B* 3gut_B 2o61_B Back     alignment and structure
>1svc_P Protein (nuclear factor kappa-B (NF-KB)); DNA-binding, transcription regulation, activator, nuclear protein, phosphorylation, repeat, DNA; HET: DNA; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 Back     alignment and structure
>1gji_A C-REL protein, C-REL proto-oncogene protein; NF-KB/DNA complex, transcription factor, C-REL homodimer, transcription/DNA complex; 2.85A {Gallus gallus} SCOP: b.1.18.1 b.2.5.3 Back     alignment and structure
>1a3q_A Protein (nuclear factor kappa-B P52); transcription factor, immune response, DNA-protein complex, transcription/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 3do7_B 3jv6_B 3jv5_A Back     alignment and structure
>2v2t_A RELB, transcription factor RELB; 4-diphosphocytidyl-2C-methyl-D-erythritol, aquifex aeolicus, nucleotide-binding, isoprene biosynthesis; 3.05A {Mus musculus} PDB: 3do7_A Back     alignment and structure
>2o61_A Transcription factor P65/interferon regulatory FA 7/interferon regulatory factor...; protein-DNA complex, transcription-DNA complex; 2.80A {Homo sapiens} Back     alignment and structure
>1imh_C NF-AT5, tonebp, nuclear factor of activated T cells 5; beta barrel, protein-DNA complex, double helix, DNA encirclement, transcription/DNA complex; 2.86A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 Back     alignment and structure
>1p7h_L Nuclear factor of activated T-cells, cytoplasmic 2; DNA binding protein, transcription regulation, activator, transcription/DNA complex; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 2o93_L 1a02_N* 1pzu_B 1owr_M 2as5_N 1s9k_C 3qrf_N 1nfa_A 1a66_A* Back     alignment and structure
>1bvo_A Transcription factor gambif1; REL protein, morphogen, immunity, development, insects, complex (transcription factor/DNA); HET: DNA; 2.70A {Anopheles gambiae} SCOP: b.2.5.3 Back     alignment and structure
>1ikn_C P50D, protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1 Back     alignment and structure
>1oy3_C Transcription factor P65; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: b.1.18.1 PDB: 1k3z_A Back     alignment and structure
>1my7_A NF-kappab P65 (RELA) subunit; immunoglobulin, IG, beta-sandwich, beta-sheet, homodimerdna- binding, transcription regulation, activator; 1.49A {Mus musculus} SCOP: b.1.18.1 PDB: 1my5_A 1bft_A Back     alignment and structure
>1u36_A DNA-binding, nuclear factor NF-kappa-B P105 subunit; transcription factor, NF-KB, dimerization domain, intertwined folding; 1.89A {Mus musculus} SCOP: b.1.18.1 PDB: 1u3z_A 1u3y_A 3jv4_B 1bfs_A 1u3j_A 1u42_A 1u41_A 1nfi_B Back     alignment and structure
>1zk9_A Transcription factor RELB; NF-KB, transcription factors, intertwined dimer; 2.18A {Mus musculus} PDB: 1zka_A 3jv6_A 3jv4_A 3jss_A 3juz_A 3jv0_A Back     alignment and structure
>2yrp_A Nuclear factor of activated T-cells, cytoplasmic 4; beta-sandwich, immunoglobulin-like fold, TIG domain, IPT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A Back     alignment and structure
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1 Back     alignment and structure
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A Back     alignment and structure
>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C* Back     alignment and structure
>1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 695
d1bvoa_175 b.2.5.3 (A:) Dorsal homologue Gambif1 {African mal 4e-56
d1ikna2173 b.2.5.3 (A:19-191) p65 subunit of NF-kappa B (NFKB 1e-55
d1ooaa2213 b.2.5.3 (A:38-250) p50 subunit of NF-kappa B (NFKB 4e-55
d1a3qa2184 b.2.5.3 (A:37-226) p52 subunit of NF-kappa B (NFKB 2e-53
d1gjia2175 b.2.5.3 (A:7-181) p65 subunit of NF-kappa B (NFKB) 1e-52
d1imhc2180 b.2.5.3 (C:188-367) T-cell transcription factor NF 2e-40
d1p7hl2183 b.2.5.3 (L:393-575) T-cell transcription factor NF 1e-36
d1u36a_104 b.1.18.1 (A:) p50 subunit of NF-kappa B transcript 7e-31
d1a3qa1101 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NF 5e-30
d1my7a_107 b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB), di 2e-29
d1gjia1100 b.1.18.1 (A:182-281) p65 subunit of NF-kappa B (NF 6e-26
d1imhc1101 b.1.18.1 (C:368-468) T-cell transcription factor N 1e-21
d1p7hl1103 b.1.18.1 (L:576-678) T-cell transcription factor N 2e-21
>d1bvoa_ b.2.5.3 (A:) Dorsal homologue Gambif1 {African malaria mosquito (Anopheles gambiae) [TaxId: 7165]} Length = 175 Back     information, alignment and structure

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: Rel/Dorsal transcription factors, DNA-binding domain
domain: Dorsal homologue Gambif1
species: African malaria mosquito (Anopheles gambiae) [TaxId: 7165]

 Score =  186 bits (474), Expect = 4e-56
 Identities = 88/184 (47%), Positives = 112/184 (60%), Gaps = 14/184 (7%)

Query: 39  PYIEILEQPKSKV-RFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVS 97
           PY+EI EQP  K  RFRYECEGRSAGSI G N+T E K++P I +  Y G A +VVSCV+
Sbjct: 1   PYVEITEQPHPKALRFRYECEGRSAGSIPGVNTTAEQKTFPSIQVHGYRGRAVVVVSCVT 60

Query: 98  KDSP-YRSHPHKLVSKDNCTNGIFCATLLEGDMTYSFTNLGIQCMKKKDI-QAFRLYLQF 155
           K+ P ++ HPH LV K+ C  G+    +    M+Y+F NLGIQC+KKKD+ +A RL  + 
Sbjct: 61  KEGPEHKPHPHNLVGKEGCKKGVCTVEINSTTMSYTFNNLGIQCVKKKDVEEALRLRQEI 120

Query: 156 CQRPFNSEKNSAWTLLGVMGFNNRDNLDLNAVRLCFQAYLPKDKDNVIK--LEPVVSDII 213
              PF +    A             ++DLNAVRLCFQ +L   +       L PVVSDII
Sbjct: 121 RVDPFRTGFGHAK---------EPGSIDLNAVRLCFQVFLEGQQRGRFTEPLTPVVSDII 171

Query: 214 YDAK 217
           YD K
Sbjct: 172 YDKK 175
>d1ikna2 b.2.5.3 (A:19-191) p65 subunit of NF-kappa B (NFKB), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 Back     information, alignment and structure
>d1ooaa2 b.2.5.3 (A:38-250) p50 subunit of NF-kappa B (NFKB), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 213 Back     information, alignment and structure
>d1a3qa2 b.2.5.3 (A:37-226) p52 subunit of NF-kappa B (NFKB), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure
>d1gjia2 b.2.5.3 (A:7-181) p65 subunit of NF-kappa B (NFKB), N-terminal domain {Chicken (Gallus gallus), C-rel [TaxId: 9031]} Length = 175 Back     information, alignment and structure
>d1imhc2 b.2.5.3 (C:188-367) T-cell transcription factor NFAT5 (TONEBP), DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 180 Back     information, alignment and structure
>d1p7hl2 b.2.5.3 (L:393-575) T-cell transcription factor NFAT1 (NFATC), DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 183 Back     information, alignment and structure
>d1u36a_ b.1.18.1 (A:) p50 subunit of NF-kappa B transcription factor {Human (Homo sapiens) [TaxId: 9606]} Length = 104 Back     information, alignment and structure
>d1a3qa1 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NFKB) {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure
>d1my7a_ b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB), dimerization domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure
>d1gjia1 b.1.18.1 (A:182-281) p65 subunit of NF-kappa B (NFKB), dimerization domain {Chicken (Gallus gallus), C-rel [TaxId: 9031]} Length = 100 Back     information, alignment and structure
>d1imhc1 b.1.18.1 (C:368-468) T-cell transcription factor NFAT5 (TONEBP) {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure
>d1p7hl1 b.1.18.1 (L:576-678) T-cell transcription factor NFAT1 (NFATC2) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query695
d1ooaa2213 p50 subunit of NF-kappa B (NFKB), N-terminal domai 100.0
d1bvoa_175 Dorsal homologue Gambif1 {African malaria mosquito 100.0
d1ikna2173 p65 subunit of NF-kappa B (NFKB), N-terminal domai 100.0
d1gjia2175 p65 subunit of NF-kappa B (NFKB), N-terminal domai 100.0
d1a3qa2184 p52 subunit of NF-kappa B (NFKB), N-terminal domai 100.0
d1imhc2180 T-cell transcription factor NFAT5 (TONEBP), DNA-bi 100.0
d1p7hl2183 T-cell transcription factor NFAT1 (NFATC), DNA-bin 100.0
d1my7a_107 p65 subunit of NF-kappa B (NFKB), dimerization dom 100.0
d1u36a_104 p50 subunit of NF-kappa B transcription factor {Hu 100.0
d1a3qa1101 p52 subunit of NF-kappa B (NFKB) {Human (Homo sapi 100.0
d1gjia1100 p65 subunit of NF-kappa B (NFKB), dimerization dom 100.0
d1imhc1101 T-cell transcription factor NFAT5 (TONEBP) {Human 100.0
d1p7hl1103 T-cell transcription factor NFAT1 (NFATC2) {Human 99.97
d2cxka182 Calmodulin binding transcription activator 1 {Huma 96.08
d1qhoa181 Five domain "maltogenic" alpha-amylase (glucan 1,4 93.68
d1cxla187 Cyclomaltodextrin glycanotransferase, domain D {Ba 93.21
d3brda1119 DNA-binding protein LAG-1 (CSL) {Caenorhabditis el 84.21
d1uadc_92 Exocyst complex component Sec5, Ral-binding domain 84.06
d3bmva183 Cyclomaltodextrin glycanotransferase, domain D {Th 82.11
d1cyga183 Cyclomaltodextrin glycanotransferase, domain D {Ba 80.99
>d1ooaa2 b.2.5.3 (A:38-250) p50 subunit of NF-kappa B (NFKB), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: Rel/Dorsal transcription factors, DNA-binding domain
domain: p50 subunit of NF-kappa B (NFKB), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.5e-70  Score=531.78  Aligned_cols=187  Identities=41%  Similarity=0.663  Sum_probs=166.5

Q ss_pred             CCceEEEEecCCcc-cccccccCCcCcccccCcccCCCCCCcceEEeeCCCCceEEEEEEEecCCCCCccccccccccCC
Q psy12708         37 RRPYIEILEQPKSK-VRFRYECEGRSAGSIMGANSTLECKSYPKIMIRNYVGDAHLVVSCVSKDSPYRSHPHKLVSKDNC  115 (695)
Q Consensus        37 ~~PyL~IvEQPkqr-fRFRYecEGrShGSL~GasSt~~~KTfPTVKL~nY~GpAvIvVsLVTkDdp~RPHPH~LVGKd~C  115 (695)
                      ++|||+|+|||+|| |||||+|||+|||||+|++|++++||||||||+||.|+|+|+|||||+|+|+|||||+||||+ |
T Consensus         1 ggP~l~IvEQP~~rg~RFRY~cEgrShGsipG~~St~~~KTyPtV~i~ny~G~a~V~vsLVT~d~p~rpHpH~LVGK~-c   79 (213)
T d1ooaa2           1 GGPYLQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKNIHLHAHSLVGKH-C   79 (213)
T ss_dssp             CCCEEEEEECBCSSSBCCBCGGGCSCCCCCCBTTCCSSSCCCCEEEEESCCSCEEEEEEEECCSSSCCBCSSEEEETT-E
T ss_pred             CCCeEEEEeCcCcccceeEecccCCCCCCCCCCCCCCCCCcCceEEEecCCCCEEEEEEEEeCCCCCCcCchhccccc-c
Confidence            48999999999999 999999999999999999999999999999999999999999999999999999999999997 9


Q ss_pred             CCCcEEEEecCCCeEEEEecceeeEEechhHH-HHHHHH-HhhcCCCCccccc---------------hhhhhcc-----
Q psy12708        116 TNGIFCATLLEGDMTYSFTNLGIQCMKKKDIQ-AFRLYL-QFCQRPFNSEKNS---------------AWTLLGV-----  173 (695)
Q Consensus       116 kdGVceV~L~P~dMtasFdNLGIqcVrKKDVE-aLk~Rk-el~~dPf~t~~n~---------------~~~l~~d-----  173 (695)
                      ++|+|++.++|++|+++|+|||||||+||||+ +|..|+ +++++||++.-..               .++..+.     
T Consensus        80 ~~Gvc~v~v~p~~~~~~F~nLGIq~v~KK~v~e~L~~R~~~~~~~~~n~g~~~~~~~~~~~~~~~~~~~lt~~e~~~i~~  159 (213)
T d1ooaa2          80 EDGVCTVTAGPKDMVVGFANLGILHVTKKKVFETLEARMTEACIRGYNPGLLVHSDLAYLQAEGGGDRQLTDREKEIIRQ  159 (213)
T ss_dssp             ETTEEEEEECSSCCEEECCSEEEECCCGGGHHHHHHHHHHHHHHHTSSHHHHTCGGGTTCCCSSSTTSSCCHHHHHHHHH
T ss_pred             cCCCceEEeCCCCcEEEeccCCceeeeehhhHHHHHHHHHHhccCccCccccccchhhhhhcccccccccchhHHHHHHH
Confidence            99999999999999999999999999999999 999884 6789999852100               0000000     


Q ss_pred             cCcCCcCCCCCCeeeEEEEEEeeCCCCC-eEeeccccccccccCCC--CCCcee
Q psy12708        174 MGFNNRDNLDLNAVRLCFQAYLPKDKDN-VIKLEPVVSDIIYDAKT--YSDLTI  224 (695)
Q Consensus       174 ig~e~aK~iDLn~VRLcFqafLpd~~G~-t~~L~PVvS~PIyDsKs--asELkI  224 (695)
                      ...+.+++||||+||||||||++|++|+ +.+|.||+|+||||+||  +++|+|
T Consensus       160 ~a~~~~k~mDLN~VRLCFqafl~d~~G~~~~~l~PVvS~pIyd~Ka~~t~eLkI  213 (213)
T d1ooaa2         160 AAVQQTKEMDLSVVRLMFTAFLPDSTGSFTRRLEPVVSDAIYDSKAPNASNLKI  213 (213)
T ss_dssp             HHHHHHTTCCTTEEEEEEEEEEECSSSCEEEECCCEEEEEEEBTTSTTTTCCCE
T ss_pred             HHHHHhhhcccceEEEEEEEEEECCCCCEeecCCCeEccccccccCCCcccccC
Confidence            0012378999999999999999999999 78899999999999998  789998
>d1bvoa_ b.2.5.3 (A:) Dorsal homologue Gambif1 {African malaria mosquito (Anopheles gambiae) [TaxId: 7165]} Back     information, alignment and structure
>d1ikna2 b.2.5.3 (A:19-191) p65 subunit of NF-kappa B (NFKB), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gjia2 b.2.5.3 (A:7-181) p65 subunit of NF-kappa B (NFKB), N-terminal domain {Chicken (Gallus gallus), C-rel [TaxId: 9031]} Back     information, alignment and structure
>d1a3qa2 b.2.5.3 (A:37-226) p52 subunit of NF-kappa B (NFKB), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1imhc2 b.2.5.3 (C:188-367) T-cell transcription factor NFAT5 (TONEBP), DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p7hl2 b.2.5.3 (L:393-575) T-cell transcription factor NFAT1 (NFATC), DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1my7a_ b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB), dimerization domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u36a_ b.1.18.1 (A:) p50 subunit of NF-kappa B transcription factor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a3qa1 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NFKB) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gjia1 b.1.18.1 (A:182-281) p65 subunit of NF-kappa B (NFKB), dimerization domain {Chicken (Gallus gallus), C-rel [TaxId: 9031]} Back     information, alignment and structure
>d1imhc1 b.1.18.1 (C:368-468) T-cell transcription factor NFAT5 (TONEBP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p7hl1 b.1.18.1 (L:576-678) T-cell transcription factor NFAT1 (NFATC2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cxka1 b.1.18.1 (A:872-953) Calmodulin binding transcription activator 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qhoa1 b.1.18.2 (A:496-576) Five domain "maltogenic" alpha-amylase (glucan 1,4-alpha-maltohydrolase), domain D {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1cxla1 b.1.18.2 (A:497-583) Cyclomaltodextrin glycanotransferase, domain D {Bacillus circulans, different strains [TaxId: 1397]} Back     information, alignment and structure
>d3brda1 b.1.18.1 (A:542-660) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1uadc_ b.1.18.18 (C:) Exocyst complex component Sec5, Ral-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3bmva1 b.1.18.2 (A:496-578) Cyclomaltodextrin glycanotransferase, domain D {Thermoanaerobacterium [TaxId: 28895]} Back     information, alignment and structure
>d1cyga1 b.1.18.2 (A:492-574) Cyclomaltodextrin glycanotransferase, domain D {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure