Psyllid ID: psy12719

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110------
Protein Sequence
MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccEEEc
Coil and Loop (DISEMBL)
MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVdqedfdgaeEYFNRsirvdpenaSLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW
Flexible Loop (DISEMBL)
mivpgdrervEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNrsirvdpeNASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETlgtievqrTFVVLW
Low Complexity Region (SEG)
MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW
Disordered region (IsUnstruct)
***************EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL*
Disordered Region (DISOPRED)
MIVPG**ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW
Disordered Region (DISEMBL)
*********VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW
Disordered Region (DISPRO)
*IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	116	2.2.26 [Sep-21-2011]
Q75Q39	610	Mitochondrial import rece	yes	N/A	0.836	0.159	0.419	6e-21
Q9CZW5	611	Mitochondrial import rece	yes	N/A	0.836	0.158	0.419	7e-21
O94826	608	Mitochondrial import rece	yes	N/A	0.844	0.161	0.409	2e-20
P23231	624	Mitochondrial import rece	N/A	N/A	0.905	0.168	0.252	6e-05
O14217	625	Probable mitochondrial im	yes	N/A	0.870	0.161	0.233	0.0007

>sp|Q75Q39|TOM70_RAT Mitochondrial import receptor subunit TOM70 OS=Rattus norvegicus GN=Tomm70a PE=1 SV=1

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/105 (41%), Positives = 69/105 (65%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
           +  +V+ ++K F   +       E   L+AQ L DQ+ F  A+E +++ I ++P+NA+ Y
Sbjct: 456 NSSQVQAAMKGFEEVIKKFPRCAEGYALYAQALTDQQQFGKADEMYDKCIDLEPDNATTY 515

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
           VH+ +L LQ + ++D+ ++LI KAI ID  C FAYET+GTIEVQR
Sbjct: 516 VHKGLLQLQWKQDLDKGLELISKAIEIDNKCDFAYETMGTIEVQR 560

Receptor that accelerates the import of all mitochondrial precursor proteins.
Rattus norvegicus (taxid: 10116)

>sp|Q9CZW5|TOM70_MOUSE Mitochondrial import receptor subunit TOM70 OS=Mus musculus GN=Tomm70a PE=1 SV=2

 Score = 99.0 bits (245), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/105 (41%), Positives = 69/105 (65%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
           +  +V+ ++K F   +       E   L+AQ L DQ+ F  A+E +++ I ++P+NA+ Y
Sbjct: 457 NSSQVQAAMKGFEEIIKKFPRCAEGYALYAQALTDQQQFGKADEMYDKCIDLEPDNATTY 516

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
           VH+ +L LQ + ++D+ ++LI KAI ID  C FAYET+GTIEVQR
Sbjct: 517 VHKGLLQLQWKQDLDKGLELISKAIEIDNKCDFAYETMGTIEVQR 561

Receptor that accelerates the import of all mitochondrial precursor proteins.

Mus musculus (taxid: 10090)

>sp|O94826|TOM70_HUMAN Mitochondrial import receptor subunit TOM70 OS=Homo sapiens GN=TOMM70A PE=1 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 68/105 (64%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
           +  +++ ++K F   +       E   L+AQ L DQ+ F  A+E +++ I ++P+NA+ Y
Sbjct: 454 NSSQIQAAMKGFEEVIKKFPRCAEGYALYAQALTDQQQFGKADEMYDKCIDLEPDNATTY 513

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
           VH+ +L LQ + ++D  ++LI KAI ID  C FAYET+GTIEVQR
Sbjct: 514 VHKGLLQLQWKQDLDRGLELISKAIEIDNKCDFAYETMGTIEVQR 558

Receptor that accelerates the import of all mitochondrial precursor proteins.

Homo sapiens (taxid: 9606)

>sp|P23231|TOM70_NEUCR Mitochondrial import receptor subunit tom-70 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tom-70 PE=2 SV=2

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 6/111 (5%)

Query: 10  VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL----- 64
           +  S+  FR  +       +    + ++L+DQ  F  A E F+ +I ++ E   +     
Sbjct: 458 IASSMATFRRCMKNFDQTPDVYNYYGELLLDQNKFQEAIEKFDTAIALEKETKPMCMNVL 517

Query: 65  -YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVV 114
             +++A+ + Q + +  EA +L EKA+ ID  C  A  T+  + +Q+  VV
Sbjct: 518 PLINKALALFQWKQDYAEAEQLCEKALIIDPECDIAVATMAQLLLQQGKVV 568

Receptor that accelerates the import of all mitochondrial precursor proteins. Seems to act in conjunction with mom19.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|O14217|TOM70_SCHPO Probable mitochondrial import receptor subunit tom70 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tom70 PE=1 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 10  VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE------NAS 63
           + +S+K F +      N  E    F ++L+DQ+ FD A + F+ +I ++        +A 
Sbjct: 465 IAESMKTFEDCKKRFPNSSEVYNYFGEILLDQQKFDDAVKNFDHAIELEKREHLTIMSAM 524

Query: 64  LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
             +++A+ + Q + ++ +A  L  +A+S D  C  A  ++    +Q+
Sbjct: 525 PLINKALAVFQWKKDISQAENLCRQALSADPECDIAIASMAQFLLQQ 571

Receptor that accelerates the import of all mitochondrial precursor proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
158288319	571	AGAP009497-PA [Anopheles gambiae str. PE	0.905	0.183	0.485	1e-23
312381683	570	hypothetical protein AND_05952 [Anophele	0.879	0.178	0.490	5e-23
195472283	590	GE12522 [Drosophila yakuba] gi|194174531	0.948	0.186	0.436	6e-23
195435350	598	GK14555 [Drosophila willistoni] gi|19416	0.974	0.188	0.407	9e-23
170032363	575	mitochondrial precursor protein import r	0.836	0.168	0.494	2e-22
270005628	557	hypothetical protein TcasGA2_TC007711 [T	0.948	0.197	0.427	6e-22
194861421	590	GG10284 [Drosophila erecta] gi|190661647	0.948	0.186	0.418	6e-22
24583793	589	translocase of outer membrane 70, isofor	0.948	0.186	0.436	7e-22
21392176	589	RE66761p [Drosophila melanogaster]	0.948	0.186	0.436	7e-22
189236082	1440	PREDICTED: similar to rCG36659 [Triboliu	0.948	0.076	0.427	7e-22

>gi|158288319|ref|XP_310198.4| AGAP009497-PA [Anopheles gambiae str. PEST] gi|157019193|gb|EAA05912.5| AGAP009497-PA [Anopheles gambiae str. PEST]

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/105 (48%), Positives = 75/105 (71%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
           D   + +  K F   +D +++ VE  ++ AQVL +++ FD A+  F R+++V+P+NA +Y
Sbjct: 413 DESAIGRIRKRFNEILDQYADCVECYSILAQVLTEEQKFDEADSCFARALKVEPDNAQIY 472

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
           VHR +L LQ +G++DE +KLI+KAI ID  C FAYETLGTIEVQR
Sbjct: 473 VHRGLLQLQWKGDIDEGVKLIKKAIQIDGKCEFAYETLGTIEVQR 517

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312381683|gb|EFR27373.1| hypothetical protein AND_05952 [Anopheles darlingi]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 75/102 (73%)

Query: 13  SLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM 72
           ++K F   ++ + N +E  ++ AQVL +Q++F  A+ YF ++++++P NA + VHRA+L 
Sbjct: 417 AMKRFHEIIEQYPNCLECYSIMAQVLTEQQEFQEADSYFQKALKLEPGNAQILVHRALLQ 476

Query: 73  LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVV 114
           LQ +GNV+EA KLI++AI ID  C FAYETLGTIEVQR  +V
Sbjct: 477 LQWQGNVEEATKLIKQAIEIDDKCEFAYETLGTIEVQRGNLV 518

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195472283|ref|XP_002088430.1| GE12522 [Drosophila yakuba] gi|194174531|gb|EDW88142.1| GE12522 [Drosophila yakuba]

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 78/110 (70%)

Query: 2   IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 61
           ++ GD+ R+E  +  F+N +D   + VE  +L AQVL DQ+ F  A+EY+ +++++ P N
Sbjct: 418 LLAGDQRRLESVMHTFQNAIDRFPSCVECYSLMAQVLADQQQFPQAQEYYEKAMKLAPTN 477

Query: 62  ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRT 111
            +L VH+A+++LQ RG+++ A++L+ KAI +D  C  AYETLGT+EVQR 
Sbjct: 478 PALIVHQAIMVLQWRGDIEMAVQLLNKAIEVDPKCELAYETLGTVEVQRA 527

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195435350|ref|XP_002065657.1| GK14555 [Drosophila willistoni] gi|194161742|gb|EDW76643.1| GK14555 [Drosophila willistoni]

 Score =  110 bits (276), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 80/113 (70%)

Query: 2   IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 61
           ++ GD++R+E  ++ F   ++   + VE  +L AQVL DQ+ F  A +Y+++++++ P N
Sbjct: 426 LLSGDQKRLESVMRSFEQAIEKFPDCVECYSLMAQVLADQQQFPQAHQYYDKAMKLAPTN 485

Query: 62  ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVV 114
            +L VH+A++MLQ RG++++A++L+E AI +D  C  AYETLGT+EVQR  + 
Sbjct: 486 PALIVHQAIMMLQWRGDIEKAVQLLEHAIEVDPKCELAYETLGTVEVQRAHLT 538

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170032363|ref|XP_001844051.1| mitochondrial precursor protein import receptor [Culex quinquefasciatus] gi|167872337|gb|EDS35720.1| mitochondrial precursor protein import receptor [Culex quinquefasciatus]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 73/97 (75%)

Query: 14  LKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML 73
           ++ FR  +D   + VE  +L AQVL DQ+++  A+ +F ++ +++PENA + VH+A+L L
Sbjct: 420 MRAFREAIDRFPDCVECYSLMAQVLSDQQEYHEADNFFEKATKIEPENAQILVHKALLQL 479

Query: 74  QARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
           Q +G+V+ A++LIEKAI+ID  C FAYETLGTI+VQR
Sbjct: 480 QWKGDVESAVQLIEKAIAIDDKCEFAYETLGTIQVQR 516

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005628|gb|EFA02076.1| hypothetical protein TcasGA2_TC007711 [Tribolium castaneum]

 Score =  108 bits (269), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 79/110 (71%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
           D + + QSL  F+  ++     VE   L+AQVL +++D++ A++ + +++ +D ENAS+Y
Sbjct: 400 DVQLLMQSLANFKKGIEKFPTCVETYVLYAQVLTEKQDYEEADKLYGKALEIDSENASIY 459

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL 115
           VHR +LMLQ +G +++A++L+++ I ID  C FAYETLGT+EVQR  +V+
Sbjct: 460 VHRGLLMLQWKGEIEQAVELMKEGIKIDDKCEFAYETLGTVEVQRGNLVV 509

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194861421|ref|XP_001969780.1| GG10284 [Drosophila erecta] gi|190661647|gb|EDV58839.1| GG10284 [Drosophila erecta]

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 77/110 (70%)

Query: 2   IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 61
           ++ GD  R+E  +  F+N ++   + VE  +L AQ+L DQ+ F  A+EY+ +++++ P N
Sbjct: 418 LLAGDERRLESVMHNFQNAIERFPSCVECYSLMAQMLADQQQFSQAQEYYTKAMKLAPTN 477

Query: 62  ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRT 111
            +L VH+A+++LQ RG+++ A++L+ KAI +D  C  AYETLGT+EVQR 
Sbjct: 478 PALIVHQAIMVLQWRGDIEVAVQLLNKAIEVDPKCELAYETLGTVEVQRA 527

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24583793|ref|NP_609536.1| translocase of outer membrane 70, isoform A [Drosophila melanogaster] gi|24583795|ref|NP_723711.1| translocase of outer membrane 70, isoform B [Drosophila melanogaster] gi|24583797|ref|NP_723712.1| translocase of outer membrane 70, isoform C [Drosophila melanogaster] gi|22946290|gb|AAF53148.2| translocase of outer membrane 70, isoform A [Drosophila melanogaster] gi|22946291|gb|AAN10797.1| translocase of outer membrane 70, isoform B [Drosophila melanogaster] gi|22946292|gb|AAN10798.1| translocase of outer membrane 70, isoform C [Drosophila melanogaster] gi|253314551|gb|ACT22579.1| FI03495p [Drosophila melanogaster]

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 77/110 (70%)

Query: 2   IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 61
           ++ GD+ R+E  +  F+N ++   + VE  +L AQVL DQ+ F  AEEY+ +++ + P N
Sbjct: 417 LLAGDQRRLESVMHTFQNAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAPTN 476

Query: 62  ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRT 111
            +L VH+A+++LQ RG+++ A++L+ KAI +D  C  AYETLGT+EVQR 
Sbjct: 477 PALIVHQAIMVLQWRGDINLAVQLLNKAIEVDPKCELAYETLGTVEVQRA 526

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21392176|gb|AAM48442.1| RE66761p [Drosophila melanogaster]

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 48/110 (43%), Positives = 77/110 (70%)

Query: 2   IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 61
           ++ GD+ R+E  +  F+N ++   + VE  +L AQVL DQ+ F  AEEY+ +++ + P N
Sbjct: 417 LLAGDQRRLESVMHTFQNAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAPTN 476

Query: 62  ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRT 111
            +L VH+A+++LQ RG+++ A++L+ KAI +D  C  AYETLGT+EVQR 
Sbjct: 477 PALIVHQAIMVLQWRGDINLAVQLLNKAIEVDPKCELAYETLGTVEVQRA 526

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236082|ref|XP_972621.2| PREDICTED: similar to rCG36659 [Tribolium castaneum]

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 79/110 (71%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
           D + + QSL  F+  ++     VE   L+AQVL +++D++ A++ + +++ +D ENAS+Y
Sbjct: 457 DVQLLMQSLANFKKGIEKFPTCVETYVLYAQVLTEKQDYEEADKLYGKALEIDSENASIY 516

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL 115
           VHR +LMLQ +G +++A++L+++ I ID  C FAYETLGT+EVQR  +V+
Sbjct: 517 VHRGLLMLQWKGEIEQAVELMKEGIKIDDKCEFAYETLGTVEVQRGNLVV 566

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	116
FB|FBgn0032397	589	Tom70 "Translocase of outer me	0.939	0.185	0.440	1.9e-21
UNIPROTKB|Q08E34	609	TOMM70A "Translocase of outer	0.879	0.167	0.421	3e-19
MGI|MGI:106295	611	Tomm70a "translocase of outer	0.879	0.166	0.431	3e-19
RGD|1303049	610	Tomm70a "translocase of outer	0.879	0.167	0.431	3.8e-19
UNIPROTKB|F1NNH9	599	TOMM70A "Uncharacterized prote	0.870	0.168	0.435	4.7e-19
UNIPROTKB|O94826	608	TOMM70A "Mitochondrial import	0.879	0.167	0.421	6.2e-19
POMBASE|SPAC6B12.12	625	tom70 "mitochondrial TOM compl	0.870	0.161	0.233	8e-05
ASPGD|ASPL0000066455	636	AN7687 [Emericella nidulans (t	0.870	0.158	0.231	0.00017
UNIPROTKB|Q6GQ04	833	cdc27 "MGC80529 protein" [Xeno	0.732	0.102	0.290	0.00024
UNIPROTKB|Q74DZ8	266	GSU1166 "TPR domain protein" [	0.655	0.285	0.285	0.00026

FB|FBgn0032397 Tom70 "Translocase of outer membrane 70" [Drosophila melanogaster (taxid:7227)]

 Score = 259 (96.2 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 48/109 (44%), Positives = 77/109 (70%)

Query:     2 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 61
             ++ GD+ R+E  +  F+N ++   + VE  +L AQVL DQ+ F  AEEY+ +++ + P N
Sbjct:   417 LLAGDQRRLESVMHTFQNAIERFPSCVECYSLTAQVLADQQQFTQAEEYYKKAMVLAPTN 476

Query:    62 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
              +L VH+A+++LQ RG+++ A++L+ KAI +D  C  AYETLGT+EVQR
Sbjct:   477 PALIVHQAIMVLQWRGDINLAVQLLNKAIEVDPKCELAYETLGTVEVQR 525

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

UNIPROTKB|Q08E34 TOMM70A "Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)" [Bos taurus (taxid:9913)]

 Score = 239 (89.2 bits), Expect = 3.0e-19, P = 3.0e-19
 Identities = 43/102 (42%), Positives = 68/102 (66%)

Query:     9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
             +++ ++K F   +       E   L+AQ L DQ+ F  A+E +++ I ++P+NA+ YVH+
Sbjct:   458 QIQAAMKGFEEVIKKFPRCAEGYALYAQALTDQQQFGKADEMYDKCINLEPDNATTYVHK 517

Query:    69 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
              +L LQ + ++D+ ++LI KAI ID  C FAYET+GTIEVQR
Sbjct:   518 GLLQLQWKQDLDKGLELISKAIEIDNKCDFAYETMGTIEVQR 559

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:106295 Tomm70a "translocase of outer mitochondrial membrane 70 homolog A (yeast)" [Mus musculus (taxid:10090)]

 Score = 239 (89.2 bits), Expect = 3.0e-19, P = 3.0e-19
 Identities = 44/102 (43%), Positives = 68/102 (66%)

Query:     9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
             +V+ ++K F   +       E   L+AQ L DQ+ F  A+E +++ I ++P+NA+ YVH+
Sbjct:   460 QVQAAMKGFEEIIKKFPRCAEGYALYAQALTDQQQFGKADEMYDKCIDLEPDNATTYVHK 519

Query:    69 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
              +L LQ + ++D+ ++LI KAI ID  C FAYET+GTIEVQR
Sbjct:   520 GLLQLQWKQDLDKGLELISKAIEIDNKCDFAYETMGTIEVQR 561

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1303049 Tomm70a "translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 238 (88.8 bits), Expect = 3.8e-19, P = 3.8e-19
 Identities = 44/102 (43%), Positives = 68/102 (66%)

Query:     9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
             +V+ ++K F   +       E   L+AQ L DQ+ F  A+E +++ I ++P+NA+ YVH+
Sbjct:   459 QVQAAMKGFEEVIKKFPRCAEGYALYAQALTDQQQFGKADEMYDKCIDLEPDNATTYVHK 518

Query:    69 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
              +L LQ + ++D+ ++LI KAI ID  C FAYET+GTIEVQR
Sbjct:   519 GLLQLQWKQDLDKGLELISKAIEIDNKCDFAYETMGTIEVQR 560

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=TAS

GO:0015031 "protein transport" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

UNIPROTKB|F1NNH9 TOMM70A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 237 (88.5 bits), Expect = 4.7e-19, P = 4.7e-19
 Identities = 44/101 (43%), Positives = 68/101 (67%)

Query:    10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 69
             V+ ++K F + +       E   L+AQ L DQ+ F  A+E +++ I ++P+NA+ YVH+ 
Sbjct:   449 VQVAMKGFEDVIKKFPKCAEGYALYAQALTDQQQFGKADEMYDKCIDLEPDNATTYVHKG 508

Query:    70 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
             +L LQ + ++D+ ++LI KAI ID  C FAYET+GTIEVQR
Sbjct:   509 LLQLQWKQDLDKGLELISKAIEIDNKCDFAYETMGTIEVQR 549

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|O94826 TOMM70A "Mitochondrial import receptor subunit TOM70" [Homo sapiens (taxid:9606)]

 Score = 236 (88.1 bits), Expect = 6.2e-19, P = 6.2e-19
 Identities = 43/102 (42%), Positives = 67/102 (65%)

Query:     9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
             +++ ++K F   +       E   L+AQ L DQ+ F  A+E +++ I ++P+NA+ YVH+
Sbjct:   457 QIQAAMKGFEEVIKKFPRCAEGYALYAQALTDQQQFGKADEMYDKCIDLEPDNATTYVHK 516

Query:    69 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
              +L LQ + ++D  ++LI KAI ID  C FAYET+GTIEVQR
Sbjct:   517 GLLQLQWKQDLDRGLELISKAIEIDNKCDFAYETMGTIEVQR 558

GO:0016021 "integral to membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=TAS

GO:0008320 "protein transmembrane transporter activity" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

POMBASE|SPAC6B12.12 tom70 "mitochondrial TOM complex subunit Tom70 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 105 (42.0 bits), Expect = 8.0e-05, P = 8.0e-05
 Identities = 25/107 (23%), Positives = 54/107 (50%)

Query:    10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE------NAS 63
             + +S+K F +      N  E    F ++L+DQ+ FD A + F+ +I ++        +A 
Sbjct:   465 IAESMKTFEDCKKRFPNSSEVYNYFGEILLDQQKFDDAVKNFDHAIELEKREHLTIMSAM 524

Query:    64 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
               +++A+ + Q + ++ +A  L  +A+S D  C  A  ++    +Q+
Sbjct:   525 PLINKALAVFQWKKDISQAENLCRQALSADPECDIAIASMAQFLLQQ 571

GO:0005739 "mitochondrion" evidence=IDA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=ISO

GO:0008565 "protein transporter activity" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=ISO

ASPGD|ASPL0000066455 AN7687 [Emericella nidulans (taxid:162425)]

 Score = 102 (41.0 bits), Expect = 0.00017, P = 0.00017
 Identities = 25/108 (23%), Positives = 58/108 (53%)

Query:    10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL----- 64
             V  ++  FR  V    +V +    + ++L+DQ++F  A E F++++ ++ ++  +     
Sbjct:   466 VASAMATFRRSVKNFEDVPDVYNYYGELLLDQQNFSEAIEKFDKAVEMEKQSKPMSINVL 525

Query:    65 -YVHRAMLMLQARGNVDEAIKLIEKA-ISIDKSCMFAYETLGTIEVQR 110
               +++A+ + Q + +  EA +L +KA I +D  C  A  T+  + +Q+
Sbjct:   526 PLINKALALFQWKHDFAEAEQLCQKALIIVDPECDIAVGTMAQLLLQQ 573

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q6GQ04 cdc27 "MGC80529 protein" [Xenopus laevis (taxid:8355)]

 Score = 102 (41.0 bits), Expect = 0.00024, P = 0.00024
 Identities = 25/86 (29%), Positives = 46/86 (53%)

Query:     8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
             E ++++L  FRN +  +S    A      +   QE F  AE +F +++ ++P+++ L  H
Sbjct:   616 EELDKALACFRNSIRVNSRHYNAWYGLGMIYYKQEKFSLAEMHFQKALDINPQSSVLLCH 675

Query:    68 RAMLMLQARGNVDEAIKLIEKAISID 93
               ++   A    D+A+  + KAISID
Sbjct:   676 IGVVQ-HALKKSDKALDTLNKAISID 700

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q74DZ8 GSU1166 "TPR domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 95 (38.5 bits), Expect = 0.00026, P = 0.00026
 Identities = 22/77 (28%), Positives = 40/77 (51%)

Query:    28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 87
             V+       + ++  + + A   + R++ +DP NA  YV+   L+  +     +AI+  E
Sbjct:    73 VDGQIALGDICLELAEHEAALAAYRRAVELDPRNADGYVNIG-LVYNSLEETSKAIEAFE 131

Query:    88 KAISIDKSCMFAYETLG 104
             KA+ ID + +FAY  LG
Sbjct:   132 KALEIDPANVFAYNGLG 148

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	116
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	8e-14
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-12
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-11
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	1e-09
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-08
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	9e-08
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	2e-07
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	4e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	4e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-04
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	2e-04
COG4235	287	COG4235, COG4235, Cytochrome c biogenesis factor [	2e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	5e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.001
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.001
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.001
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.002
pfam13431	34	pfam13431, TPR_17, Tetratricopeptide repeat	0.002
PRK11788	389	PRK11788, PRK11788, tetratricopeptide repeat prote	0.002
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.003
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 61.6 bits (150), Expect = 8e-14
 Identities = 17/90 (18%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
                +++L+ +   ++   +  +A    A        ++ A E + +++ +DP+NA  Y
Sbjct: 12  KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAY 71

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
            +  +      G  +EA++  EKA+ +D +
Sbjct: 72  YNLGLA-YYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 57.7 bits (140), Expect = 1e-12
 Identities = 18/60 (30%), Positives = 35/60 (58%)

Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
             L    D+D A E + +++ +DP+NA  Y + A+  L+   + +EA++ +EKA+ +D 
Sbjct: 10 GNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 55.8 bits (135), Expect = 1e-11
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 29  EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 88
           EA      +     D+D A EY+ +++ +DP+NA  Y + A       G  +EA++  EK
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAA-YYKLGKYEEALEDYEK 59

Query: 89  AISIDKSCMFAYETLG 104
           A+ +D     AY  LG
Sbjct: 60  ALELDPDNAKAYYNLG 75

Length = 100

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 53.8 bits (129), Expect = 1e-09
 Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           A + ++  D D AEE F+++++++ E+  +Y HRA L    +G   +A K  +K+I +D 
Sbjct: 372 ASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDP 430

Query: 95  SCMFAYETLG 104
             +F++  LG
Sbjct: 431 DFIFSHIQLG 440

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 50.4 bits (120), Expect = 2e-08
 Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 6/112 (5%)

Query: 9   RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY--- 65
            +  S+  FR          +    + ++L+DQ  FD A E F+ +I ++ E   +Y   
Sbjct: 448 SIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNV 507

Query: 66  ---VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVV 114
              +++A+ + Q + +  EA  L EKA+ ID  C  A  T+  + +Q+  V 
Sbjct: 508 LPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD 559

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 45.4 bits (108), Expect = 9e-08
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 8/79 (10%)

Query: 24 HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-------DPENASLYVHRAMLMLQAR 76
          H ++  A    A VL    D+D A E   +++ +        PE A    + A L   A 
Sbjct: 1  HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARL-YLAL 59

Query: 77 GNVDEAIKLIEKAISIDKS 95
          G+ DEA++ +EKA+++ ++
Sbjct: 60 GDYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 44.6 bits (106), Expect = 2e-07
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
          A+  +   D+D A      ++   P  A   +     +L+ +G + EA  L+  A++ D
Sbjct: 4  ARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLR-QGRLAEAAALLRAALAAD 61

Length = 65

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 9   RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
           RV++++      +    +   A +L  +  +   DF+ A EY  ++  +DPENA+     
Sbjct: 344 RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQL 403

Query: 69  AMLMLQARGNVDEAIKLIEKAISID 93
            +  L ++G+  EAI  +E A  +D
Sbjct: 404 GISKL-SQGDPSEAIADLETAAQLD 427

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 41.0 bits (94), Expect = 4e-05
 Identities = 19/102 (18%), Positives = 44/102 (43%)

Query: 5   GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 64
           GD E   +  ++        + + EA      +L     ++ A E   ++++++P++ + 
Sbjct: 144 GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAE 203

Query: 65  YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
            +    L+    G  +EA++  EKA+ +D     A   L  +
Sbjct: 204 ALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALL 245

Length = 291

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 40.6 bits (93), Expect = 4e-05
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 6   DRERVEQSLKEFRNFVDT-HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL 64
              R E++L+     +     +  EA      + +    ++ A EY+ +++ +DP+NA  
Sbjct: 179 ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEA 238

Query: 65  YVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
             + A+ +L   G  +EA++ +EKA+ +D  
Sbjct: 239 LYNLAL-LLLELGRYEEALEALEKALELDPD 268

Length = 291

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 33  LFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92
           L   + + + D   A E F +++ ++P+      + A + +Q  GN D+AI+  EK ++I
Sbjct: 470 LLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE-GNPDDAIQRFEKVLTI 528

Query: 93  DK 94
           D 
Sbjct: 529 DP 530

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 38.7 bits (88), Expect = 2e-04
 Identities = 19/75 (25%), Positives = 34/75 (45%)

Query: 29  EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 88
           EA      +L     ++ A E   +++ +DP+        A+  L   G+ +EA++L EK
Sbjct: 96  EALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEK 155

Query: 89  AISIDKSCMFAYETL 103
           A+ +D       E L
Sbjct: 156 ALELDPELNELAEAL 170

Length = 291

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 7/67 (10%)

Query: 42  EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR---GNVDEAIKLIEKAISIDKSCMF 98
           +DF  A + + ++I +DP NA LY  RA    QA    GN  EA+    KAI +D S   
Sbjct: 16  DDFALAVDLYTQAIDLDPNNAELYADRA----QANIKLGNFTEAVADANKAIELDPSLAK 71

Query: 99  AYETLGT 105
           AY   GT
Sbjct: 72  AYLRKGT 78

Length = 356

>gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 15/94 (15%), Positives = 37/94 (39%), Gaps = 2/94 (2%)

Query: 4   PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 63
           P   + +E  +      +  +    E   L  +  +       A   +  ++R+  +N  
Sbjct: 132 PPAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE 191

Query: 64  LYVHRA-MLMLQARGNVD-EAIKLIEKAISIDKS 95
           + +  A  L  QA   +  +A  L+ +A+++D +
Sbjct: 192 ILLGLAEALYYQAGQQMTAKARALLRQALALDPA 225

Length = 287

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 10/89 (11%)

Query: 7   RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV 66
           RE  E++L    +F    +N+       A++ + + + D A + F + + +DP+N  L  
Sbjct: 485 REAFEKALSIEPDFFPAAANL-------ARIDIQEGNPDDAIQRFEKVLTIDPKN--LRA 535

Query: 67  HRAMLMLQAR-GNVDEAIKLIEKAISIDK 94
             A+  L  R GN +EA+  +EKA  ++ 
Sbjct: 536 ILALAGLYLRTGNEEEAVAWLEKAAELNP 564

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 18/104 (17%), Positives = 44/104 (42%), Gaps = 8/104 (7%)

Query: 7   RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV 66
           R  +++ L      VD          L   +L+   + + A   + ++I + P N ++ +
Sbjct: 179 RALIDEVLTADPGNVDALL-------LKGDLLLSLGNIELALAAYRKAIALRPNNIAVLL 231

Query: 67  HRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
             A ++++A G  +EA K  +  +    +   A+     ++ Q+
Sbjct: 232 ALATILIEA-GEFEEAEKHADALLKKAPNSPLAHYLKALVDFQK 274

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 1/101 (0%)

Query: 9   RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
              +++ +          +  A  L     +    FD A     +  +  P+NASL+   
Sbjct: 412 DPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLL 471

Query: 69  AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 109
             + L  +G++ +A +  EKA+SI+     A   L  I++Q
Sbjct: 472 GAIYL-GKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ 511

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           AQ+ + +  FD A    +  +  DP N    + +  L L + GN++ A+    KAI++  
Sbjct: 166 AQLALAENRFDEARALIDEVLTADPGNVDALLLKGDL-LLSLGNIELALAAYRKAIALRP 224

Query: 95  SCMFAYETLGTI 106
           + +     L TI
Sbjct: 225 NNIAVLLALATI 236

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 34.0 bits (79), Expect = 0.001
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 61
           EA        +   D+D A EY+ +++ +DP N
Sbjct: 1  AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 34  FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA 89
              +LV++ + D A     +++ + PE A++  H A L L A G   EA K ++K 
Sbjct: 843 LGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLA-LALLATGRKAEARKELDKL 897

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat

 Score = 33.3 bits (77), Expect = 0.002
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 50 YFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84
           + +++ +DP NA  Y + A+L L   G  DEA++
Sbjct: 1  LYEKALELDPNNAEAYYNLALL-LLNLGQYDEALQ 34

Length = 34

>gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 75  ARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
           ARG++D A  L++KA++ D  C+ A   LG + + +
Sbjct: 192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQ 227

Length = 389

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 8/81 (9%)

Query: 42  EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS------ 95
           +DF  AE    +++ +DPE        A L+LQ +G+VDEA+KL E+A  + ++      
Sbjct: 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQ-QGDVDEALKLFERAAELARTEGELVQ 580

Query: 96  -CMFAYETLGTIEVQRTFVVL 115
              +A  T   I+VQ  + VL
Sbjct: 581 AISYAEATRTQIQVQEDYPVL 601

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 33.5 bits (77), Expect = 0.004
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 7  RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 60
           E +E++L+  R   + H     A    A++ +   D+D A EY  +++ +   
Sbjct: 25 LELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLEKALALREA 78

Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	116
PRK15359	144	type III secretion system chaperone protein SscB;	99.88
KOG0553|consensus	304		99.87
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.86
PRK15359	144	type III secretion system chaperone protein SscB;	99.83
KOG4626|consensus	966		99.83
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.82
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.82
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.82
KOG4626|consensus	966		99.8
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.8
KOG1155|consensus	559		99.8
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.79
PRK11189	296	lipoprotein NlpI; Provisional	99.79
PRK12370	553	invasion protein regulator; Provisional	99.79
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.78
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.78
PRK12370	553	invasion protein regulator; Provisional	99.78
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.78
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.76
KOG1126|consensus	638		99.76
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.76
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.75
KOG1155|consensus	559		99.75
PRK11189	296	lipoprotein NlpI; Provisional	99.75
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.74
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.74
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.74
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.74
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.73
KOG1126|consensus	638		99.73
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.71
KOG0547|consensus	606		99.71
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.71
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.7
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.7
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.7
KOG1125|consensus	579		99.69
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.69
KOG1125|consensus	579		99.68
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.68
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.68
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.67
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.67
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.66
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.66
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.66
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.65
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.65
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.65
KOG0548|consensus	539		99.64
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.64
KOG0547|consensus	606		99.64
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.63
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.63
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.62
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.62
KOG0553|consensus	304		99.6
PLN02789	320	farnesyltranstransferase	99.6
PRK10803	263	tol-pal system protein YbgF; Provisional	99.59
KOG2076|consensus	895		99.59
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.59
PRK15331	165	chaperone protein SicA; Provisional	99.58
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.57
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.56
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.56
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.55
KOG0543|consensus	397		99.55
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.55
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.54
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.54
KOG0548|consensus	539		99.54
KOG3060|consensus	289		99.53
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.52
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.52
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.52
PLN02789	320	farnesyltranstransferase	99.51
KOG1173|consensus	611		99.51
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	99.51
PRK14574	822	hmsH outer membrane protein; Provisional	99.51
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.5
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.5
PF13371	73	TPR_9: Tetratricopeptide repeat	99.5
KOG3060|consensus	289		99.5
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.49
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.48
KOG4162|consensus	799		99.48
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.47
KOG0550|consensus	486		99.45
KOG1156|consensus	700		99.44
KOG4234|consensus	271		99.43
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.43
KOG1129|consensus	478		99.43
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.43
PF13371	73	TPR_9: Tetratricopeptide repeat	99.42
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.41
PRK15331	165	chaperone protein SicA; Provisional	99.41
KOG0495|consensus	913		99.41
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.41
KOG2003|consensus	840		99.41
KOG2002|consensus	1018		99.39
KOG4648|consensus	536		99.39
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.39
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.39
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.39
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.38
KOG1128|consensus	777		99.37
PRK11906	458	transcriptional regulator; Provisional	99.36
KOG1129|consensus	478		99.35
PRK14574	822	hmsH outer membrane protein; Provisional	99.35
PRK10803	263	tol-pal system protein YbgF; Provisional	99.35
PF13512	142	TPR_18: Tetratricopeptide repeat	99.34
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.34
KOG1173|consensus	611		99.33
PF12688	120	TPR_5: Tetratrico peptide repeat	99.33
KOG0550|consensus	486		99.33
KOG4162|consensus	799		99.33
KOG1156|consensus	700		99.33
KOG1840|consensus	508		99.32
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.31
KOG2076|consensus	895		99.31
KOG1840|consensus	508		99.31
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.31
PRK11906	458	transcriptional regulator; Provisional	99.3
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.3
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.29
KOG0624|consensus	504		99.29
PF12688	120	TPR_5: Tetratrico peptide repeat	99.29
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.29
KOG2002|consensus	1018		99.28
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.26
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.24
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	99.23
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	99.23
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.23
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.2
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.19
KOG1127|consensus	1238		99.15
KOG1128|consensus	777		99.15
KOG4642|consensus	284		99.14
KOG4555|consensus	175		99.14
KOG0543|consensus	397		99.14
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.14
PF13428	44	TPR_14: Tetratricopeptide repeat	99.1
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.1
KOG1174|consensus	564		99.09
KOG4648|consensus	536		99.09
KOG1127|consensus	1238		99.08
KOG2003|consensus	840		99.08
KOG0376|consensus	476		99.07
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.07
KOG0495|consensus	913		99.06
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.05
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.05
PF13512	142	TPR_18: Tetratricopeptide repeat	99.04
PF13428	44	TPR_14: Tetratricopeptide repeat	99.03
KOG4642|consensus	284		99.02
COG4700	251	Uncharacterized protein conserved in bacteria cont	99.01
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	99.0
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.98
KOG1174|consensus	564		98.97
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.97
KOG4555|consensus	175		98.96
KOG0624|consensus	504		98.95
PF13431	34	TPR_17: Tetratricopeptide repeat	98.93
PF13431	34	TPR_17: Tetratricopeptide repeat	98.9
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.9
KOG4234|consensus	271		98.86
KOG0545|consensus	329		98.85
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.85
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.83
PLN03077	857	Protein ECB2; Provisional	98.82
KOG4340|consensus	459		98.82
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.81
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.8
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.79
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.79
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.78
PLN03218	1060	maturation of RBCL 1; Provisional	98.78
KOG1915|consensus	677		98.76
KOG3081|consensus	299		98.76
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.75
KOG2376|consensus	652		98.75
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.74
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.74
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.73
PLN03218	1060	maturation of RBCL 1; Provisional	98.72
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.68
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.67
KOG3785|consensus	557		98.65
KOG2610|consensus	491		98.65
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.63
KOG0551|consensus	390		98.62
KOG1070|consensus	1710		98.62
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.62
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.61
KOG2053|consensus	932		98.61
KOG1308|consensus	377		98.6
KOG0551|consensus	390		98.58
PLN03077	857	Protein ECB2; Provisional	98.56
KOG2396|consensus	568		98.55
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.55
KOG2471|consensus	696		98.53
KOG3081|consensus	299		98.5
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.48
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.48
KOG3785|consensus	557		98.48
KOG1915|consensus	677		98.47
KOG2796|consensus	366		98.46
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.46
KOG2376|consensus	652		98.45
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.45
KOG4507|consensus	886		98.44
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.4
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.4
KOG2796|consensus	366		98.39
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.37
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.36
PRK10941	269	hypothetical protein; Provisional	98.36
KOG1130|consensus	639		98.35
PRK04841	903	transcriptional regulator MalT; Provisional	98.32
KOG1130|consensus	639		98.32
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	98.31
KOG1941|consensus	518		98.31
KOG0376|consensus	476		98.28
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	98.28
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.27
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	98.17
KOG1308|consensus	377		98.17
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	98.16
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.15
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.13
PRK04841	903	transcriptional regulator MalT; Provisional	98.11
KOG3824|consensus	472		98.11
KOG1585|consensus	308		98.11
KOG3824|consensus	472		98.1
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	98.08
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	98.07
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	98.06
KOG1070|consensus	1710		98.06
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	98.04
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	98.01
COG5191	435	Uncharacterized conserved protein, contains HAT (H	98.0
KOG0545|consensus	329		98.0
KOG2053|consensus	932		97.99
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.93
PRK10941	269	hypothetical protein; Provisional	97.92
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.91
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.9
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.89
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.88
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.88
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.85
KOG4340|consensus	459		97.84
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.82
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	97.82
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	97.81
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.8
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.78
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.72
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.7
KOG3364|consensus	149		97.66
KOG1310|consensus	758		97.62
KOG1586|consensus	288		97.61
KOG1586|consensus	288		97.61
KOG3364|consensus	149		97.54
KOG1258|consensus	577		97.5
KOG2396|consensus	568		97.48
KOG4814|consensus	872		97.46
KOG2047|consensus	835		97.45
KOG4814|consensus	872		97.44
COG2912	269	Uncharacterized conserved protein [Function unknow	97.42
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.41
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	97.38
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.37
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.37
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	97.35
KOG2610|consensus	491		97.31
KOG1550|consensus	552		97.3
KOG1914|consensus	656		97.28
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	97.27
KOG1941|consensus	518		97.26
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	97.25
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.24
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	97.13
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	97.1
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	97.09
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	97.09
KOG0530|consensus	318		97.07
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.07
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.06
KOG2471|consensus	696		97.04
KOG3617|consensus	1416		96.99
KOG1310|consensus	758		96.98
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	96.97
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.94
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.91
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.9
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.88
KOG0529|consensus	421		96.88
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.85
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.82
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	96.82
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	96.8
COG3629	280	DnrI DNA-binding transcriptional activator of the	96.77
KOG1585|consensus	308		96.76
COG2912	269	Uncharacterized conserved protein [Function unknow	96.72
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	96.71
KOG4507|consensus	886		96.71
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.7
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	96.68
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.68
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.64
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	96.59
KOG1550|consensus	552		96.55
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	96.51
KOG1258|consensus	577		96.46
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.45
KOG2300|consensus	629		96.39
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.38
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	96.33
KOG2047|consensus	835		96.26
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	96.25
KOG2300|consensus	629		96.23
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.15
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	96.05
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	96.02
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.86
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.78
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	95.77
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.77
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	95.75
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.74
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	95.57
KOG0530|consensus	318		95.52
PHA02537	230	M terminase endonuclease subunit; Provisional	95.5
KOG0546|consensus	372		95.45
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	95.36
PF12854	34	PPR_1: PPR repeat	95.32
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.24
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	95.18
KOG1914|consensus	656		95.12
COG4455	273	ImpE Protein of avirulence locus involved in tempe	95.09
PF13226	277	DUF4034: Domain of unknown function (DUF4034)	95.05
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.04
KOG0529|consensus	421		94.83
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	94.81
COG3947	361	Response regulator containing CheY-like receiver a	94.67
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	94.65
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.43
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.36
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.32
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	94.27
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	94.24
KOG2041|consensus	1189		94.11
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	94.0
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	93.88
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.79
KOG1839|consensus	1236		93.67
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	93.57
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	93.56
COG3947	361	Response regulator containing CheY-like receiver a	93.52
KOG3617|consensus	1416		93.46
KOG1839|consensus	1236		93.31
KOG3807|consensus	556		93.21
KOG2422|consensus	665		93.15
KOG0985|consensus	1666		92.88
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	92.87
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	92.54
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	92.44
KOG3783|consensus	546		92.34
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	91.98
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	91.74
KOG2908|consensus	380		91.45
PF13041	50	PPR_2: PPR repeat family	91.41
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	91.37
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	91.37
KOG0546|consensus	372		91.34
KOG4151|consensus	748		91.1
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	90.93
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	90.57
KOG1464|consensus	440		90.33
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	90.13
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	89.92
COG4455	273	ImpE Protein of avirulence locus involved in tempe	89.89
KOG0985|consensus	1666		89.84
KOG2114|consensus	933		89.51
KOG0276|consensus	794		89.39
KOG3783|consensus	546		89.3
PF13812	34	PPR_3: Pentatricopeptide repeat domain	89.27
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	89.2
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	89.07
smart00671	36	SEL1 Sel1-like repeats. These represent a subfamil	88.93
KOG3807|consensus	556		88.28
KOG0276|consensus	794		88.27
KOG2581|consensus	493		88.19
PRK15490	578	Vi polysaccharide biosynthesis protein TviE; Provi	88.1
PF02184	32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	88.0
PF02064	121	MAS20: MAS20 protein import receptor; InterPro: IP	87.93
KOG0890|consensus	2382		87.78
PF13226	277	DUF4034: Domain of unknown function (DUF4034)	87.56
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	87.3
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	87.23
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	87.23
KOG0890|consensus	2382		87.05
PF04212	69	MIT: MIT (microtubule interacting and transport) d	86.96
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	86.71
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	85.96
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	85.77
COG4941	415	Predicted RNA polymerase sigma factor containing a	85.29
PF07219	108	HemY_N: HemY protein N-terminus; InterPro: IPR0108	85.04
KOG3616|consensus	1636		84.99
cd00280	200	TRFH Telomeric Repeat binding Factor or TTAGGG Rep	84.53
PF08238	39	Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r	84.34
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	83.94
KOG2422|consensus	665		83.74
PF12753	404	Nro1: Nuclear pore complex subunit Nro1; InterPro:	82.66
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	82.53
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	82.29
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	81.9
KOG2041|consensus	1189		81.67
PF09797	365	NatB_MDM20: N-acetyltransferase B complex (NatB) n	81.59
PF02064	121	MAS20: MAS20 protein import receptor; InterPro: IP	81.37
KOG4279|consensus	1226		81.05
cd00280	200	TRFH Telomeric Repeat binding Factor or TTAGGG Rep	81.04
KOG0686|consensus	466		80.92
PRK15490	578	Vi polysaccharide biosynthesis protein TviE; Provi	80.81
KOG4279|consensus	1226		80.73
PF05053	618	Menin: Menin; InterPro: IPR007747 MEN1, the gene r	80.73
TIGR02996	42	rpt_mate_G_obs repeat-companion domain TIGR02996.	80.57
KOG1464|consensus	440		80.55

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.88  E-value=2.6e-21  Score=103.66  Aligned_cols=107  Identities=10%  Similarity=0.095  Sum_probs=100.4

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      ....|++++|+..|.+++..+|.+..++..+|.++...|++++|+..|++++..+|.++.+++++|.++.. .|++++|+
T Consensus        34 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g~~~eAi  112 (144)
T PRK15359         34 SWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MGEPGLAR  112 (144)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHH
Confidence            35679999999999999999999999999999999999999999999999999999999999999999887 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRT  111 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~  111 (116)
                      ..+.+++...|+++..+..++.+....+
T Consensus       113 ~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359        113 EAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            9999999999999999999998876654

>KOG0553|consensus

Probab=99.87  E-value=5.7e-21  Score=109.84  Aligned_cols=109  Identities=14%  Similarity=0.172  Sum_probs=103.1

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      .+.++|++|+..|.++|.++|.++..+++.+.+|.+.|.++.|++.++.++.++|....+|..+|.+++. +|++++|++
T Consensus        92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~gk~~~A~~  170 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LGKYEEAIE  170 (304)
T ss_pred             HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cCcHHHHHH
Confidence            3568999999999999999999999999999999999999999999999999999999999999999888 999999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      .|+++++++|++...+.+|..+....+...
T Consensus       171 aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  171 AYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999887776554

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.86  E-value=5.4e-20  Score=103.13  Aligned_cols=111  Identities=18%  Similarity=0.278  Sum_probs=103.3

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCC--HHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN--VDEAI   83 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~   83 (116)
                      ..++.++++..++++++.+|++...|..+|.++...|++++|+..|+++++++|+++.++..+|.+++...|+  +++|.
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            4567899999999999999999999999999999999999999999999999999999999999985443677  59999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.++++++.+|+++.++..+|.++...|++++|
T Consensus       131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~A  163 (198)
T PRK10370        131 EMIDKALALDANEVTALMLLASDAFMQADYAQA  163 (198)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999875

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.83  E-value=1.4e-19  Score=97.02  Aligned_cols=100  Identities=12%  Similarity=-0.006  Sum_probs=93.7

Q ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         13 SLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        13 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      -...++++++.+|++   +..+|.++...|++++|...|++++..+|.+..++..+|.++.. .|++++|+..|.+++..
T Consensus        12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhc
Confidence            457899999999986   55789999999999999999999999999999999999999877 89999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHhhcccccC
Q psy12719         93 DKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        93 ~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +|+++.+++.+|.++...|++++|
T Consensus        88 ~p~~~~a~~~lg~~l~~~g~~~eA  111 (144)
T PRK15359         88 DASHPEPVYQTGVCLKMMGEPGLA  111 (144)
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999998875

>KOG4626|consensus

Probab=99.83  E-value=1.5e-19  Score=112.95  Aligned_cols=113  Identities=18%  Similarity=0.257  Sum_probs=80.7

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      +|.++|..+-|++.|+++++..|..+++++++|+.+...|+..+|..+|.+++...|..+++.+++|.++-. .|.++.|
T Consensus       295 iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E-~~~~e~A  373 (966)
T KOG4626|consen  295 IYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE-QGKIEEA  373 (966)
T ss_pred             EEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hccchHH
Confidence            456677777777777777777777777777777777777777777777777777777777777777777554 6777777


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ...|.++++.+|....+..+||.++.++|++++|
T Consensus       374 ~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~A  407 (966)
T KOG4626|consen  374 TRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDA  407 (966)
T ss_pred             HHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHH
Confidence            7777777777777766677777777776666553

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.82  E-value=3.6e-19  Score=99.32  Aligned_cols=113  Identities=15%  Similarity=0.145  Sum_probs=94.4

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      -|.+.|++..|..-++++++.+|++..+|..++.+|...|+.+.|.+.|+++++++|++..++.+.|..++. +|++++|
T Consensus        44 ~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~eA  122 (250)
T COG3063          44 GYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEA  122 (250)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChHHH
Confidence            466788899999999999999999999999999999999999999999999999999998888888888887 7888888


Q ss_pred             HHHHHHHHhc--CCCcHHHHHHHHHHHHhhcccccC
Q psy12719         83 IKLIEKAISI--DKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        83 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ...|++++..  -|.....+.++|.|..+.|+++.|
T Consensus       123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A  158 (250)
T COG3063         123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQA  158 (250)
T ss_pred             HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhH
Confidence            8888888764  234466788888888888877653

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.82  E-value=4.5e-19  Score=113.70  Aligned_cols=109  Identities=12%  Similarity=0.151  Sum_probs=58.4

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      ..|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++.++|++..++..+|.+++. +|++++|+..
T Consensus       377 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~-~g~~~eA~~~  455 (615)
T TIGR00990       377 ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK-EGSIASSMAT  455 (615)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH-CCCHHHHHHH
Confidence            344555555555555555555555555555555555555555555555555555555555555555444 4555555555


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         86 IEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      +++++..+|+++.++..+|.++..+|++++
T Consensus       456 ~~~al~~~P~~~~~~~~lg~~~~~~g~~~~  485 (615)
T TIGR00990       456 FRRCKKNFPEAPDVYNYYGELLLDQNKFDE  485 (615)
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence            555555555555555555555555555443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.82  E-value=5.1e-19  Score=113.45  Aligned_cols=112  Identities=21%  Similarity=0.339  Sum_probs=104.4

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +..+|++++|+..+++++..+|.....+..+|.++...|++++|+..|++++..+|+++.+++.+|.+++. .|++++|+
T Consensus       341 ~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~  419 (615)
T TIGR00990       341 KCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-KGEFAQAG  419 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHH
Confidence            44678999999999999999999999999999999999999999999999999999999999999999887 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ..+++++..+|++..++..+|.++..+|++++|
T Consensus       420 ~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA  452 (615)
T TIGR00990       420 KDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASS  452 (615)
T ss_pred             HHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHH
Confidence            999999999999999999999999999988764

>KOG4626|consensus

Probab=99.80  E-value=3.2e-19  Score=111.57  Aligned_cols=107  Identities=20%  Similarity=0.256  Sum_probs=52.3

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI   86 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   86 (116)
                      .|+..+|+++|.+++.++|.++++..++|+++..+|.+++|...|.+++...|....++.++|.++-+ +|++++|+.+|
T Consensus       333 ~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq-qgnl~~Ai~~Y  411 (966)
T KOG4626|consen  333 KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ-QGNLDDAIMCY  411 (966)
T ss_pred             ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh-cccHHHHHHHH
Confidence            34445555555555555555555555555555555555555555544444444444444444444333 44444444444


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         87 EKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      ++++.+.|....++.++|..+..+|+.+
T Consensus       412 kealrI~P~fAda~~NmGnt~ke~g~v~  439 (966)
T KOG4626|consen  412 KEALRIKPTFADALSNMGNTYKEMGDVS  439 (966)
T ss_pred             HHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence            4444444444444444444444444433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.80  E-value=6.6e-18  Score=102.12  Aligned_cols=105  Identities=16%  Similarity=0.148  Sum_probs=99.5

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      ...|+|++|++.|.+++..+|+++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.+++. +|++++|+.
T Consensus        13 ~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg~~~eA~~   91 (356)
T PLN03088         13 FVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LEEYQTAKA   91 (356)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hCCHHHHHH
Confidence            4578999999999999999999999999999999999999999999999999999999999999999888 899999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhh
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQR  110 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~  110 (116)
                      .+++++.++|+++.+...++.+....
T Consensus        92 ~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         92 ALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999998888886555

>KOG1155|consensus

Probab=99.80  E-value=2.7e-18  Score=103.99  Aligned_cols=109  Identities=15%  Similarity=0.150  Sum_probs=100.5

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI   86 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   86 (116)
                      .++.++|+.+|+++++++|+...+|..+|.-|..+++...|++.|++|++++|.+-.+|+.+|.+|-- ++.+.=|.-++
T Consensus       343 r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh~YaLyYf  421 (559)
T KOG1155|consen  343 RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMHFYALYYF  421 (559)
T ss_pred             HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcchHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999655 89999999999


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         87 EKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +++....|.++..|..||.||.+.++.++|
T Consensus       422 qkA~~~kPnDsRlw~aLG~CY~kl~~~~eA  451 (559)
T KOG1155|consen  422 QKALELKPNDSRLWVALGECYEKLNRLEEA  451 (559)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHhccHHHH
Confidence            999999999999999999999998887765

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.79  E-value=1.4e-17  Score=88.82  Aligned_cols=89  Identities=13%  Similarity=0.072  Sum_probs=84.8

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      ...|++++|+..|+.....+|.+.+.|+++|.++...|++.+|+..|.+++.++|+++.++++.|.|++. .|+.+.|.+
T Consensus        46 y~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~-lG~~~~A~~  124 (157)
T PRK15363         46 MEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA-CDNVCYAIK  124 (157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cCCHHHHHH
Confidence            4679999999999999999999999999999999999999999999999999999999999999999998 999999999


Q ss_pred             HHHHHHhcCC
Q psy12719         85 LIEKAISIDK   94 (116)
Q Consensus        85 ~~~~~~~~~~   94 (116)
                      .|+.++....
T Consensus       125 aF~~Ai~~~~  134 (157)
T PRK15363        125 ALKAVVRICG  134 (157)
T ss_pred             HHHHHHHHhc
Confidence            9999998863

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.79  E-value=5.8e-18  Score=100.28  Aligned_cols=93  Identities=16%  Similarity=0.211  Sum_probs=84.3

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++.++|.+++. .|++++|+
T Consensus        74 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~eA~  152 (296)
T PRK11189         74 YDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY-GGRYELAQ  152 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999877 89999999


Q ss_pred             HHHHHHHhcCCCcH
Q psy12719         84 KLIEKAISIDKSCM   97 (116)
Q Consensus        84 ~~~~~~~~~~~~~~   97 (116)
                      +.++++++.+|+++
T Consensus       153 ~~~~~al~~~P~~~  166 (296)
T PRK11189        153 DDLLAFYQDDPNDP  166 (296)
T ss_pred             HHHHHHHHhCCCCH
Confidence            99999999999886

>PRK12370 invasion protein regulator; Provisional

Probab=99.79  E-value=6.5e-18  Score=107.23  Aligned_cols=108  Identities=14%  Similarity=0.093  Sum_probs=74.4

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI   86 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   86 (116)
                      .+++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++.. .|++++|+..+
T Consensus       317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~~~  395 (553)
T PRK12370        317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQTI  395 (553)
T ss_pred             chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            34567777777777777777777777777777777777777777777777777777777777777665 67777777777


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         87 EKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      +++++.+|.++..+..++.++...|++++
T Consensus       396 ~~Al~l~P~~~~~~~~~~~~~~~~g~~ee  424 (553)
T PRK12370        396 NECLKLDPTRAAAGITKLWITYYHTGIDD  424 (553)
T ss_pred             HHHHhcCCCChhhHHHHHHHHHhccCHHH
Confidence            77777777766555555555555565544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.78  E-value=2.9e-18  Score=95.73  Aligned_cols=113  Identities=14%  Similarity=0.124  Sum_probs=104.1

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhcc--CCCCHHHHHHHHHHHHHhcCCHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--DPENASLYVHRAMLMLQARGNVD   80 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~   80 (116)
                      .|...|+.+.|.+.|++++.++|++.++++++|..++.+|++++|...|++++..  .|..+.++-++|.|.++ .|+++
T Consensus        78 ~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~-~gq~~  156 (250)
T COG3063          78 YYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK-AGQFD  156 (250)
T ss_pred             HHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh-cCCch
Confidence            4567899999999999999999999999999999999999999999999999964  35667899999999888 89999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         81 EAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .|...++++++.+|+.+.....++..++..|++..|
T Consensus       157 ~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         157 QAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             hHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence            999999999999999999999999999998887643

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.78  E-value=1e-17  Score=111.23  Aligned_cols=108  Identities=10%  Similarity=0.135  Sum_probs=102.1

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI   86 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   86 (116)
                      .|++++|+..++++++.+|+ +.++..+|.++.+.|++++|+..+++++..+|+++.++.++|.++.. .|++++|+..+
T Consensus       589 ~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~l  666 (987)
T PRK09782        589 PGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREML  666 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            48999999999999999997 88999999999999999999999999999999999999999999777 89999999999


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         87 EKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +++++.+|+++.++.++|.++...|++++|
T Consensus       667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA  696 (987)
T PRK09782        667 ERAHKGLPDDPALIRQLAYVNQRLDDMAAT  696 (987)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            999999999999999999999999998764

>PRK12370 invasion protein regulator; Provisional

Probab=99.78  E-value=8e-18  Score=106.85  Aligned_cols=112  Identities=12%  Similarity=0.038  Sum_probs=102.5

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|.++..++.++.+++. .|++++|+
T Consensus       348 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-~g~~eeA~  426 (553)
T PRK12370        348 NTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY-HTGIDDAI  426 (553)
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-ccCHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999998877777777677 89999999


Q ss_pred             HHHHHHHhcC-CCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISID-KSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ..+++++... |+++.++..+|.++...|++++|
T Consensus       427 ~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA  460 (553)
T PRK12370        427 RLGDELRSQHLQDNPILLSMQVMFLSLKGKHELA  460 (553)
T ss_pred             HHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHH
Confidence            9999999875 78898999999999999998875

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.78  E-value=1.1e-17  Score=88.87  Aligned_cols=96  Identities=19%  Similarity=0.206  Sum_probs=81.7

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|...+++++..+|.++.++..+|.++...|++++|..++++++..+|+++..++.+|.++.. .|++++|+
T Consensus        27 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~g~~~~A~  105 (135)
T TIGR02552        27 LYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA-LGEPESAL  105 (135)
T ss_pred             HHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-cCCHHHHH
Confidence            44568888888888888888888888888888888888888888888888888888888888888888777 78888888


Q ss_pred             HHHHHHHhcCCCcHHHH
Q psy12719         84 KLIEKAISIDKSCMFAY  100 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~  100 (116)
                      ..++++++.+|++....
T Consensus       106 ~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552       106 KALDLAIEICGENPEYS  122 (135)
T ss_pred             HHHHHHHHhccccchHH
Confidence            88888888888876644

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.76  E-value=4.6e-17  Score=86.42  Aligned_cols=101  Identities=18%  Similarity=0.111  Sum_probs=95.9

Q ss_pred             HHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12719         15 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK   94 (116)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   94 (116)
                      +.+++++..+|++......+|..+...|++++|...+++++..+|.++.++..+|.+++. .|++++|...+.+++..+|
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALDP   82 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCC
Confidence            468899999999999999999999999999999999999999999999999999999888 8999999999999999999


Q ss_pred             CcHHHHHHHHHHHHhhcccccC
Q psy12719         95 SCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        95 ~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .++..+..+|.++...|++++|
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A  104 (135)
T TIGR02552        83 DDPRPYFHAAECLLALGEPESA  104 (135)
T ss_pred             CChHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999998764

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1126|consensus

Probab=99.76  E-value=5.8e-18  Score=105.65  Aligned_cols=107  Identities=23%  Similarity=0.296  Sum_probs=64.4

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE   87 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   87 (116)
                      .+++.|..+|..++..+|.+-.+|+++|.+|.++++++.|.-.|++|+.++|.+......+|..+.+ .|+.++|+..++
T Consensus       469 ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k~~d~AL~~~~  547 (638)
T KOG1126|consen  469 EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LKRKDKALQLYE  547 (638)
T ss_pred             HHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hhhhhHHHHHHH
Confidence            4455555555555555566666666666666666666666666666666666666666666666554 566666666666


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         88 KAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      +|+.++|.++...+..+.++...+++++
T Consensus       548 ~A~~ld~kn~l~~~~~~~il~~~~~~~e  575 (638)
T KOG1126|consen  548 KAIHLDPKNPLCKYHRASILFSLGRYVE  575 (638)
T ss_pred             HHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence            6666666665555555555555555544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.76  E-value=5.7e-18  Score=99.67  Aligned_cols=112  Identities=21%  Similarity=0.274  Sum_probs=91.0

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +.+.|+.++|+..++++++.+|+++.+...++.++...|+++++...+.......|.++..+..+|.++.. +|++++|.
T Consensus       156 ~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~-lg~~~~Al  234 (280)
T PF13429_consen  156 YEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ-LGRYEEAL  234 (280)
T ss_dssp             HHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH-HT-HHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc-cccccccc
Confidence            45678999999999999999999999999999999999999998888888888888888899999999887 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ..+++++..+|+++..+..+|.++...|+.++|
T Consensus       235 ~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A  267 (280)
T PF13429_consen  235 EYLEKALKLNPDDPLWLLAYADALEQAGRKDEA  267 (280)
T ss_dssp             HHHHHHHHHSTT-HHHHHHHHHHHT--------
T ss_pred             ccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999998876

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.75  E-value=5.1e-17  Score=104.85  Aligned_cols=111  Identities=8%  Similarity=0.081  Sum_probs=90.7

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhh----HHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDG----AEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD   80 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (116)
                      ...|++++|+..+.+++..+|+++.++..+|.++...|++++    |+..|++++..+|+++.++..+|.++.. .|+++
T Consensus       223 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~  301 (656)
T PRK15174        223 CAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR-TGQNE  301 (656)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHH
Confidence            356788888888888888888888888888888888888875    7888888888888888888888888776 78888


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         81 EAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +|+..+++++..+|+++.++..++.++...|++++|
T Consensus       302 eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA  337 (656)
T PRK15174        302 KAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAA  337 (656)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            888888888888888888888888888888877654

>KOG1155|consensus

Probab=99.75  E-value=5e-17  Score=98.59  Aligned_cols=112  Identities=17%  Similarity=0.136  Sum_probs=105.1

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      |..+++...|++.|.++++.+|.+-++|+++|++|.-++..-=|+-+|++++...|.++..|..+|.||-+ .++.++|+
T Consensus       374 yvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l~~~~eAi  452 (559)
T KOG1155|consen  374 YVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEK-LNRLEEAI  452 (559)
T ss_pred             HHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-hccHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999877 99999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ++|.+++........++..+|.++...++..+|
T Consensus       453 KCykrai~~~dte~~~l~~LakLye~l~d~~eA  485 (559)
T KOG1155|consen  453 KCYKRAILLGDTEGSALVRLAKLYEELKDLNEA  485 (559)
T ss_pred             HHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence            999999999888889999999999999887664

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.75  E-value=1.8e-16  Score=94.00  Aligned_cols=109  Identities=16%  Similarity=0.150  Sum_probs=99.2

Q ss_pred             hhcHHHHHHHHHHHHhhCC---C-hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHS---N-VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      .+..+.++..+.+++...|   . .+..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++.. .|++++|
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-~g~~~~A  117 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-AGNFDAA  117 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence            4567888999999996443   3 367899999999999999999999999999999999999999999877 9999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +..+.++++++|++..++.++|.++...|++++|
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA  151 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELA  151 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999999999999999998765

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.74  E-value=1.1e-16  Score=90.74  Aligned_cols=111  Identities=16%  Similarity=0.152  Sum_probs=105.2

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      ...|+|..|+..+.++....|+++.+|..+|.+|.+.|++++|...|.+++++.|..+.+..++|..++- .|+++.|..
T Consensus       111 ~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-~gd~~~A~~  189 (257)
T COG5010         111 IRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-RGDLEDAET  189 (257)
T ss_pred             HHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-cCCHHHHHH
Confidence            4578999999999999999999999999999999999999999999999999999999999999999887 899999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .+.++....+.+..+..+++.+...+|++++|
T Consensus       190 lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A  221 (257)
T COG5010         190 LLLPAYLSPAADSRVRQNLALVVGLQGDFREA  221 (257)
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence            99999999888999999999999999998765

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.74  E-value=1.1e-16  Score=103.17  Aligned_cols=111  Identities=13%  Similarity=0.066  Sum_probs=106.3

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      ...|.+++|+..++.++...|++..++..++.++.+.+++++|...+++++..+|+++.+++.+|.++.+ .|++++|+.
T Consensus        97 ~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g~~~~A~~  175 (694)
T PRK15179         97 EAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE-IGQSEQADA  175 (694)
T ss_pred             HHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hcchHHHHH
Confidence            4578999999999999999999999999999999999999999999999999999999999999999766 999999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .|++++..+|+++.++..+|.++...|+.++|
T Consensus       176 ~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A  207 (694)
T PRK15179        176 CFERLSRQHPEFENGYVGWAQSLTRRGALWRA  207 (694)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999999998765

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.74  E-value=1.8e-16  Score=90.30  Aligned_cols=85  Identities=18%  Similarity=0.345  Sum_probs=43.5

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      ..|++++|++.+++++..+|++..++..+|.++...|++++|+..+++++...|.+..++..+|.++.. .|++++|.+.
T Consensus        43 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~  121 (234)
T TIGR02521        43 EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-QGKYEQAMQQ  121 (234)
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cccHHHHHHH
Confidence            345555555555555555555555555555555555555555555555555555554444444444433 4444444444


Q ss_pred             HHHHHh
Q psy12719         86 IEKAIS   91 (116)
Q Consensus        86 ~~~~~~   91 (116)
                      +.+++.
T Consensus       122 ~~~~~~  127 (234)
T TIGR02521       122 FEQAIE  127 (234)
T ss_pred             HHHHHh
Confidence            444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.74  E-value=1.8e-16  Score=90.29  Aligned_cols=113  Identities=19%  Similarity=0.213  Sum_probs=103.5

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC--CCCHHHHHHHHHHHHHhcCCHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--PENASLYVHRAMLMLQARGNVD   80 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~   80 (116)
                      .+...|++++|++.+++++...|.+..++..+|.++...|++++|...+++++...  |.....+..+|.++.. .|+++
T Consensus        74 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~  152 (234)
T TIGR02521        74 YYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK-AGDFD  152 (234)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH-cCCHH
Confidence            34567999999999999999999999999999999999999999999999999754  4567789999999887 89999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         81 EAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +|...+.+++..+|+++..+..++.++...|++++|
T Consensus       153 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       153 KAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999998764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.73  E-value=1.2e-16  Score=85.29  Aligned_cols=95  Identities=16%  Similarity=0.097  Sum_probs=87.2

Q ss_pred             HhhC-CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12719         21 VDTH-SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA   99 (116)
Q Consensus        21 ~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   99 (116)
                      .... ++..+..+.+|..++..|++++|...|+.++..+|.+...|+++|.++-. +|++++|+..|.+++.++|++|.+
T Consensus        27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCchH
Confidence            3445 66677889999999999999999999999999999999999999999555 999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccccC
Q psy12719        100 YETLGTIEVQRTFVVLW  116 (116)
Q Consensus       100 ~~~l~~~~~~~~~~~~a  116 (116)
                      +.++|.++...|+.+.|
T Consensus       106 ~~~ag~c~L~lG~~~~A  122 (157)
T PRK15363        106 PWAAAECYLACDNVCYA  122 (157)
T ss_pred             HHHHHHHHHHcCCHHHH
Confidence            99999999999998754

>KOG1126|consensus

Probab=99.73  E-value=1.3e-16  Score=99.75  Aligned_cols=114  Identities=19%  Similarity=0.205  Sum_probs=109.4

Q ss_pred             ccccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12719          2 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE   81 (116)
Q Consensus         2 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (116)
                      ++|.++++++.|+-.|++++.++|.+......+|.++.+.|+.++|+..+++|+.++|.++...+..|.+++. .+++++
T Consensus       497 ~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~-~~~~~e  575 (638)
T KOG1126|consen  497 TVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS-LGRYVE  575 (638)
T ss_pred             hheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh-hcchHH
Confidence            5788999999999999999999999999999999999999999999999999999999999999999999887 999999


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         82 AIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      |...+++.-+..|+...++..+|.+|...|+.+.|
T Consensus       576 al~~LEeLk~~vP~es~v~~llgki~k~~~~~~~A  610 (638)
T KOG1126|consen  576 ALQELEELKELVPQESSVFALLGKIYKRLGNTDLA  610 (638)
T ss_pred             HHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHH
Confidence            99999999999999999999999999999987654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.71  E-value=2.2e-16  Score=104.99  Aligned_cols=112  Identities=13%  Similarity=0.107  Sum_probs=104.1

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      ++.+.|++++|+..+.+++..+|+++.++..+|.++...|++++|+..++++++.+|+++.+++++|.++.. .|++++|
T Consensus       618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~-lGd~~eA  696 (987)
T PRK09782        618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR-LDDMAAT  696 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence            356789999999999999999999999999999999999999999999999999999999999999999887 9999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      +..+++++...|++..+....+.+.....+++.
T Consensus       697 ~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~  729 (987)
T PRK09782        697 QHYARLVIDDIDNQALITPLTPEQNQQRFNFRR  729 (987)
T ss_pred             HHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHH
Confidence            999999999999998888888888777666543

>KOG0547|consensus

Probab=99.71  E-value=9.9e-17  Score=97.93  Aligned_cols=113  Identities=19%  Similarity=0.255  Sum_probs=105.8

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      +|.+..+.++....|.++.+++|.++++|...|++.+-.+++++|+..|+++++++|.+.-++..++.+.++ ++.++++
T Consensus       369 ~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr-~~k~~~~  447 (606)
T KOG0547|consen  369 AYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR-QHKIAES  447 (606)
T ss_pred             HHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-HHHHHHH
Confidence            456677888899999999999999999999999999999999999999999999999999999999999898 8999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ...|+.+...+|+.++++...|.++..+++|++|
T Consensus       448 m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A  481 (606)
T KOG0547|consen  448 MKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKA  481 (606)
T ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHH
Confidence            9999999999999999999999999999998865

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.71  E-value=3.5e-16  Score=101.08  Aligned_cols=112  Identities=14%  Similarity=0.067  Sum_probs=103.2

Q ss_pred             ccchhcHHH----HHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCH
Q psy12719          4 PGDRERVEQ----SLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV   79 (116)
Q Consensus         4 ~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   79 (116)
                      +...|++++    |+..|++++..+|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.++.. .|++
T Consensus       256 l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~-~G~~  334 (656)
T PRK15174        256 YYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ-VGQY  334 (656)
T ss_pred             HHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCH
Confidence            345677775    89999999999999999999999999999999999999999999999999999999999877 8999


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         80 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ++|+..+++++..+|+++..+..++.++...|++++|
T Consensus       335 ~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA  371 (656)
T PRK15174        335 TAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEA  371 (656)
T ss_pred             HHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999987777789999999998764

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.70  E-value=9e-16  Score=86.18  Aligned_cols=94  Identities=15%  Similarity=0.215  Sum_probs=86.4

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHH-HhhcC--hhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVL-VDQED--FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV   79 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   79 (116)
                      .+...|++++|+..|+++++.+|+++.++..+|.++ ...|+  +++|...++++++.+|+++.+++.+|..++. .|++
T Consensus        82 ~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g~~  160 (198)
T PRK10370         82 YYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM-QADY  160 (198)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cCCH
Confidence            356789999999999999999999999999999974 67777  5999999999999999999999999999888 9999


Q ss_pred             HHHHHHHHHHHhcCCCcH
Q psy12719         80 DEAIKLIEKAISIDKSCM   97 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~   97 (116)
                      ++|+..++++++..|.+.
T Consensus       161 ~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        161 AQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHHHHHHHHHhhCCCCc
Confidence            999999999999987654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.70  E-value=2e-16  Score=74.89  Aligned_cols=67  Identities=34%  Similarity=0.576  Sum_probs=63.8

Q ss_pred             hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q psy12719         27 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG-NVDEAIKLIEKAISIDK   94 (116)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~   94 (116)
                      ++.+|..+|.+++..|++++|+..|.++++.+|+++.+++++|.++.. +| ++++|++.++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence            577899999999999999999999999999999999999999999888 88 79999999999999987

...

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.70  E-value=6.3e-16  Score=101.74  Aligned_cols=111  Identities=16%  Similarity=0.240  Sum_probs=87.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..|++++..+|+++.++..+|.++...|+ .+|+.++++++...|+++..+..+|.+++. .|++++|.
T Consensus       780 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~  857 (899)
T TIGR02917       780 YLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE-KGEADRAL  857 (899)
T ss_pred             HHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHH
Confidence            3456777777777777777777777777777777777777 677777777777777777777788888766 78888888


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.++++++.+|.++.++..++.++...|++++|
T Consensus       858 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A  890 (899)
T TIGR02917       858 PLLRKAVNIAPEAAAIRYHLALALLATGRKAEA  890 (899)
T ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Confidence            888888888888888888888888888887764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1125|consensus

Probab=99.69  E-value=2.1e-16  Score=97.71  Aligned_cols=111  Identities=14%  Similarity=0.164  Sum_probs=85.4

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      +|.-.|+|++|+++|+.++...|++...|..+|-++....+..+|+..|++|+++.|...++++++|.++.. +|.|++|
T Consensus       439 Ly~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN-lG~ykEA  517 (579)
T KOG1125|consen  439 LYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN-LGAYKEA  517 (579)
T ss_pred             HHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh-hhhHHHH
Confidence            455567788888888888888888888888888888888888888888888888888888888888888776 7888888


Q ss_pred             HHHHHHHHhcCCC----------cHHHHHHHHHHHHhhcccc
Q psy12719         83 IKLIEKAISIDKS----------CMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        83 ~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~  114 (116)
                      .++|..++.+.+.          +..+|..|-.++...++.|
T Consensus       518 ~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D  559 (579)
T KOG1125|consen  518 VKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD  559 (579)
T ss_pred             HHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence            8888888876543          1246777777777666655

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.69  E-value=8.6e-16  Score=104.33  Aligned_cols=112  Identities=21%  Similarity=0.283  Sum_probs=96.1

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHH--------------HHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS--------------LYVHRA   69 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------~~~~~~   69 (116)
                      +...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..              .....|
T Consensus       279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g  358 (1157)
T PRK11447        279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG  358 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence            345789999999999999999999999999999999999999999999999999987642              123446


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         70 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        70 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .++.. .|++++|+..+++++..+|+++.++..+|.++...|++++|
T Consensus       359 ~~~~~-~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA  404 (1157)
T PRK11447        359 DAALK-ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAA  404 (1157)
T ss_pred             HHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            67666 79999999999999999999988999999999999888764

>KOG1125|consensus

Probab=99.68  E-value=2.8e-16  Score=97.16  Aligned_cols=108  Identities=13%  Similarity=0.124  Sum_probs=100.1

Q ss_pred             hcHHHHHHHHHHHHhhCC--ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHS--NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      ..+..-.+.|-.+....|  .++++...+|.+|...|+|+.|+.+|+.|+...|++...|..+|-.+.. ..+.++|++.
T Consensus       408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsA  486 (579)
T KOG1125|consen  408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISA  486 (579)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHH
Confidence            346667788888888888  7899999999999999999999999999999999999999999999666 7899999999


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         86 IEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      |.+|+++.|+...+++++|..+..+|.|++|
T Consensus       487 Y~rALqLqP~yVR~RyNlgIS~mNlG~ykEA  517 (579)
T KOG1125|consen  487 YNRALQLQPGYVRVRYNLGISCMNLGAYKEA  517 (579)
T ss_pred             HHHHHhcCCCeeeeehhhhhhhhhhhhHHHH
Confidence            9999999999999999999999999999875

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.68  E-value=1.7e-15  Score=102.88  Aligned_cols=111  Identities=17%  Similarity=0.214  Sum_probs=98.2

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHH-------------
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML-------------   71 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-------------   71 (116)
                      ...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|.+..++..++.+             
T Consensus       362 ~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l  441 (1157)
T PRK11447        362 LKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFI  441 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999987776655444             


Q ss_pred             -----------------------------HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         72 -----------------------------MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        72 -----------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                                                   +.. .|++++|++.++++++.+|+++.++..++.++...|++++|
T Consensus       442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~-~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A  514 (1157)
T PRK11447        442 ASLSASQRRSIDDIERSLQNDRLAQQAEALEN-QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA  514 (1157)
T ss_pred             HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence                                         233 68999999999999999999999999999999999998764

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.68  E-value=1.7e-15  Score=99.74  Aligned_cols=112  Identities=20%  Similarity=0.212  Sum_probs=97.7

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|...|++++..+|++..++..+|.++...|++++|...+++++..+|.+..++..+|.++.. .|++++|.
T Consensus       135 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~  213 (899)
T TIGR02917       135 YLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLS-LGNIELAL  213 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-cCCHHHHH
Confidence            34568889999999999999998888889999999999999999999999999999888889889988777 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ..+++++..+|+++.++..++.++...|++++|
T Consensus       214 ~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A  246 (899)
T TIGR02917       214 AAYRKAIALRPNNPAVLLALATILIEAGEFEEA  246 (899)
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            999999999998888888888888888887654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.67  E-value=6e-16  Score=75.91  Aligned_cols=82  Identities=26%  Similarity=0.402  Sum_probs=72.7

Q ss_pred             chhcHHHHHHHHHHHHhhCCC--hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      ++|+++.|+..++++++..|.  +...++.+|.+++..|++++|+..+++ ...+|.++...+.+|.+++. +|++++|+
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-l~~y~eAi   78 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-LGKYEEAI   78 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-hCCHHHHH
Confidence            368999999999999999995  466788899999999999999999999 88888888999999999888 99999999


Q ss_pred             HHHHHH
Q psy12719         84 KLIEKA   89 (116)
Q Consensus        84 ~~~~~~   89 (116)
                      +.++++
T Consensus        79 ~~l~~~   84 (84)
T PF12895_consen   79 KALEKA   84 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            999874

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.67  E-value=2.5e-15  Score=91.59  Aligned_cols=111  Identities=15%  Similarity=0.204  Sum_probs=105.4

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..+...++..|+++..+...+.++...++..+|.+.+++++..+|..+..+.++|.++++ .|++.+|+
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~~~eai  394 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGKPQEAI  394 (484)
T ss_pred             HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCChHHHH
Confidence            44568899999999999999999999999999999999999999999999999999999999999999988 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      ..+.+.+..+|+++..|..|+..|..+|+..+
T Consensus       395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~  426 (484)
T COG4783         395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAE  426 (484)
T ss_pred             HHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence            99999999999999999999999999998765

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.66  E-value=3.1e-15  Score=86.12  Aligned_cols=110  Identities=20%  Similarity=0.116  Sum_probs=58.8

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhH---HHHHHHHHHHhh--------cChhhHHHHHHHHhccCCCCHHHH--------
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVE---ACTLFAQVLVDQ--------EDFDGAEEYFNRSIRVDPENASLY--------   65 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~~--------   65 (116)
                      ...|++++|+..++++++.+|+++.   +++.+|.++...        |++++|+..+++++..+|++..++        
T Consensus        81 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~  160 (235)
T TIGR03302        81 YKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY  160 (235)
T ss_pred             HhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH
Confidence            3445555555555555555554443   345555555443        455555555555555555543221        


Q ss_pred             ---------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHhhccccc
Q psy12719         66 ---------VHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        66 ---------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~  115 (116)
                               ..+|..++. .|++.+|+..+.+++...|+.   +.++..++.++...|++++
T Consensus       161 ~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~  221 (235)
T TIGR03302       161 LRNRLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDL  221 (235)
T ss_pred             HHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHH
Confidence                     234444444 566666666666666665443   3566666666666666554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.66  E-value=2.8e-15  Score=86.26  Aligned_cols=112  Identities=17%  Similarity=0.145  Sum_probs=95.7

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChh---HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHH---HHHHHHHHHHHhc-
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVV---EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS---LYVHRAMLMLQAR-   76 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~-   76 (116)
                      +...|++++|+..+++++...|+++   .+++.+|.++...|++++|+..++++++..|+++.   +++.+|.+++. . 
T Consensus        43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~-~~  121 (235)
T TIGR03302        43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYN-QI  121 (235)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHH-hc
Confidence            4567999999999999999999875   58899999999999999999999999999998765   78999999876 4 


Q ss_pred             -------CCHHHHHHHHHHHHhcCCCcHHHH-----------------HHHHHHHHhhcccccC
Q psy12719         77 -------GNVDEAIKLIEKAISIDKSCMFAY-----------------ETLGTIEVQRTFVVLW  116 (116)
Q Consensus        77 -------~~~~~a~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a  116 (116)
                             |++++|++.+++++..+|++...+                 ..+|.++...|++++|
T Consensus       122 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A  185 (235)
T TIGR03302       122 DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAA  185 (235)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence                   789999999999999999885443                 2456677777777653

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.66  E-value=4.7e-15  Score=97.36  Aligned_cols=110  Identities=10%  Similarity=0.060  Sum_probs=98.8

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      .+...|++++|++.+++++..+|.++.++..++.++...|++++|+..+++++...|+++. +..+|.++.. .|++++|
T Consensus        58 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-~g~~~~A  135 (765)
T PRK10049         58 AYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-AGRHWDE  135 (765)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-CCCHHHH
Confidence            3567789999999999999999999999999999999999999999999999999999999 9999999777 8999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      +..++++++..|+++.++..++.++...+..+
T Consensus       136 l~~l~~al~~~P~~~~~~~~la~~l~~~~~~e  167 (765)
T PRK10049        136 LRAMTQALPRAPQTQQYPTEYVQALRNNRLSA  167 (765)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence            99999999999999999999998887766655

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.65  E-value=8.6e-15  Score=75.93  Aligned_cols=98  Identities=12%  Similarity=0.166  Sum_probs=87.7

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcC
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARG   77 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~   77 (116)
                      +...|++++|++.|.+++..+|++   ..+++.+|.++...|+++.|+..|+.++...|++   +.+++.+|.++.. .+
T Consensus        12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~   90 (119)
T TIGR02795        12 VLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE-LG   90 (119)
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH-hC
Confidence            456899999999999999999876   5688999999999999999999999999998875   6789999999887 89


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHH
Q psy12719         78 NVDEAIKLIEKAISIDKSCMFAYET  102 (116)
Q Consensus        78 ~~~~a~~~~~~~~~~~~~~~~~~~~  102 (116)
                      ++++|...+.+++...|+++.+...
T Consensus        91 ~~~~A~~~~~~~~~~~p~~~~~~~~  115 (119)
T TIGR02795        91 DKEKAKATLQQVIKRYPGSSAAKLA  115 (119)
T ss_pred             ChHHHHHHHHHHHHHCcCChhHHHH
Confidence            9999999999999999998765443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.65  E-value=5.2e-15  Score=90.55  Aligned_cols=109  Identities=20%  Similarity=0.293  Sum_probs=53.6

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH-----HHHHHHHHHHHHhcCCHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA-----SLYVHRAMLMLQARGNVD   80 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~   80 (116)
                      ..|++++|+..|.++++..|.+..++..++.++...|++++|+..+++++...|.+.     ..+..+|.++.. .|+++
T Consensus       119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~  197 (389)
T PRK11788        119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA-RGDLD  197 (389)
T ss_pred             HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh-CCCHH
Confidence            344555555555555555554444555555555555555555555555544444331     123344444444 45555


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         81 EAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      +|+..+.++++.+|+...++..++.++...|++++
T Consensus       198 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  232 (389)
T PRK11788        198 AARALLKKALAADPQCVRASILLGDLALAQGDYAA  232 (389)
T ss_pred             HHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHH
Confidence            55555555555555554455555555555554443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.4e-14  Score=84.02  Aligned_cols=108  Identities=12%  Similarity=0.144  Sum_probs=98.7

Q ss_pred             cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhc--CCHHHHHHHH
Q psy12719          9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR--GNVDEAIKLI   86 (116)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~   86 (116)
                      +.+.-+.-++..+..+|++.+-|..+|.+|+.+|+++.|...|.+++++.|+++..+..+|.+++...  ....++...+
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            46677788899999999999999999999999999999999999999999999999999999987643  3577899999


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         87 EKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ++++..+|.+..+...||..++.+|++.+|
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~~~~A  246 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGDYAEA  246 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcccHHHH
Confidence            999999999999999999999999999864

>KOG0548|consensus

Probab=99.64  E-value=7.8e-15  Score=90.28  Aligned_cols=105  Identities=12%  Similarity=0.170  Sum_probs=98.8

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      ++..|+|..|+..|.+++..+|+++..+.+.|.+|...+.+..|+...+.+++++|++..+|...|.++.. +.+|++|.
T Consensus       368 ~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~-mk~ydkAl  446 (539)
T KOG0548|consen  368 AFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA-MKEYDKAL  446 (539)
T ss_pred             HHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHHHHHHH
Confidence            45779999999999999999999999999999999999999999999999999999999999999999777 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQ  109 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (116)
                      +.|+++++.+|++.++...+..|...
T Consensus       447 eay~eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  447 EAYQEALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            99999999999998888888888765

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.64  E-value=3.8e-15  Score=69.66  Aligned_cols=64  Identities=28%  Similarity=0.495  Sum_probs=55.5

Q ss_pred             HHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12719         33 LFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM   97 (116)
Q Consensus        33 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~   97 (116)
                      .+|..+...|++++|+..|+++++.+|.++.+++.+|.+++. +|++++|+..++++++.+|++|
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCC
Confidence            578888899999999999999999999999999999999887 8999999999999999988875

>KOG0547|consensus

Probab=99.64  E-value=4e-15  Score=91.08  Aligned_cols=111  Identities=35%  Similarity=0.590  Sum_probs=100.8

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC------CHHHHHHHHHHHHHhcCCH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE------NASLYVHRAMLMLQARGNV   79 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~~~~~~~~~~~~   79 (116)
                      +++.++++...|+.+++.+|.+++++...|.++..+++|+.|.+.|..++.+.|+      ++..+...|.+.+++.+++
T Consensus       440 r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~  519 (606)
T KOG0547|consen  440 RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDI  519 (606)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhH
Confidence            4567888888899999999999999999999999999999999999999999998      7888888888888888999


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         80 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .+|++.+.++++++|.+..++..+|.+..++|+.++|
T Consensus       520 ~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eA  556 (606)
T KOG0547|consen  520 NQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEA  556 (606)
T ss_pred             HHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHH
Confidence            9999999999999999999999999999999998765

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.63  E-value=1.7e-14  Score=88.34  Aligned_cols=112  Identities=13%  Similarity=0.026  Sum_probs=95.5

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC----HHHHHHHHHHHHHhcCCH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----ASLYVHRAMLMLQARGNV   79 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~   79 (116)
                      +...|++++|+..|.++++.+|++..++..+|.++...|++++|+..+++++...+..    ..++..+|.++.. .|++
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~-~g~~  123 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK-AGLL  123 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-CCCH
Confidence            3456889999999999999999999999999999999999999999999888754333    2467888998777 8999


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         80 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ++|...+.++++..|.+..++..++.++...|++++|
T Consensus       124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A  160 (389)
T PRK11788        124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKA  160 (389)
T ss_pred             HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHH
Confidence            9999999999998888888889999999888887754

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.63  E-value=1.3e-15  Score=89.69  Aligned_cols=112  Identities=13%  Similarity=0.122  Sum_probs=90.1

Q ss_pred             ccchhcHHHHHHHHHHHHhhC--CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTH--SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE   81 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (116)
                      +...++++++...++++....  |.++.+|..+|.++.+.|++++|+..++++++.+|+++.+...++.++.. .|++++
T Consensus       120 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~~~~~  198 (280)
T PF13429_consen  120 YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLID-MGDYDE  198 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TCHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCChHH
Confidence            446688888888888876554  66788899999999999999999999999999999999999999998776 899999


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         82 AIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.+.+.......|+++..+..+|.++...|++++|
T Consensus       199 ~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~A  233 (280)
T PF13429_consen  199 AREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEA  233 (280)
T ss_dssp             HHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHhccccccccc
Confidence            88888888888888888899999999999988764

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.62  E-value=1.7e-14  Score=71.41  Aligned_cols=91  Identities=19%  Similarity=0.342  Sum_probs=80.8

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|.+...+..+|.++.. .|++++|.
T Consensus        10 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~   88 (100)
T cd00189          10 YYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-LGKYEEAL   88 (100)
T ss_pred             HHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-HHhHHHHH
Confidence            44578899999999999999998888899999999999999999999999999999988889999999777 79999999


Q ss_pred             HHHHHHHhcCCC
Q psy12719         84 KLIEKAISIDKS   95 (116)
Q Consensus        84 ~~~~~~~~~~~~   95 (116)
                      ..+.+++..+|.
T Consensus        89 ~~~~~~~~~~~~  100 (100)
T cd00189          89 EAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHccCCC
Confidence            999998887763

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.62  E-value=1.4e-14  Score=82.35  Aligned_cols=109  Identities=16%  Similarity=0.110  Sum_probs=99.6

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI   86 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   86 (116)
                      .|+-+.+.....++....|.+..+...+|......|++..|+..++++....|+++.+|..+|.+|-+ .|+++.|...|
T Consensus        79 ~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~Gr~~~Ar~ay  157 (257)
T COG5010          79 RGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LGRFDEARRAY  157 (257)
T ss_pred             cccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-ccChhHHHHHH
Confidence            45666677777777778888888888899999999999999999999999999999999999999877 89999999999


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         87 EKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .+++++.|+.+.+..+++..+...|+++.|
T Consensus       158 ~qAl~L~~~~p~~~nNlgms~~L~gd~~~A  187 (257)
T COG5010         158 RQALELAPNEPSIANNLGMSLLLRGDLEDA  187 (257)
T ss_pred             HHHHHhccCCchhhhhHHHHHHHcCCHHHH
Confidence            999999999999999999999999998754

>KOG0553|consensus

Probab=99.60  E-value=1.4e-14  Score=83.85  Aligned_cols=87  Identities=28%  Similarity=0.333  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719         29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV  108 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  108 (116)
                      +-+..-|+-.+..++|.+|+..|.+||.++|.++..|.+++.+|.+ +|.++.|++.++.++.++|....+|..||.++.
T Consensus        82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~-Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK-LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            3456778888899999999999999999999999999999999888 999999999999999999999999999999999


Q ss_pred             hhcccccC
Q psy12719        109 QRTFVVLW  116 (116)
Q Consensus       109 ~~~~~~~a  116 (116)
                      .+|++++|
T Consensus       161 ~~gk~~~A  168 (304)
T KOG0553|consen  161 ALGKYEEA  168 (304)
T ss_pred             ccCcHHHH
Confidence            99998765

>PLN02789 farnesyltranstransferase

Probab=99.60  E-value=3.9e-14  Score=84.60  Aligned_cols=105  Identities=14%  Similarity=0.175  Sum_probs=49.9

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc-ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCH--HHHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE-DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV--DEAIK   84 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~a~~   84 (116)
                      +.+++|+..+.+++..+|++..+|...+.++...+ ++++++..+.+++..+|++..+|+.++.+... .+..  +++..
T Consensus        51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l~~~~~~~el~  129 (320)
T PLN02789         51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-LGPDAANKELE  129 (320)
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-cCchhhHHHHH
Confidence            34445555555555555555555555555544444 34455555555555555555555544444332 3331  33444


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhhccc
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQRTFV  113 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  113 (116)
                      .+.++++.+|++..+|...+.++...|++
T Consensus       130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~  158 (320)
T PLN02789        130 FTRKILSLDAKNYHAWSHRQWVLRTLGGW  158 (320)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhhhH
Confidence            44444444444444444444444444443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.59  E-value=1.5e-13  Score=80.05  Aligned_cols=94  Identities=20%  Similarity=0.298  Sum_probs=85.8

Q ss_pred             chhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNV   79 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~   79 (116)
                      +.|+|++|+..|+..+...|++   +.+++.+|.+++..|++++|+..|++++...|++   +.+++.+|.++.. .|++
T Consensus       155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g~~  233 (263)
T PRK10803        155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KGDT  233 (263)
T ss_pred             hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cCCH
Confidence            4589999999999999999998   5799999999999999999999999999888775   7789999999777 8999


Q ss_pred             HHHHHHHHHHHhcCCCcHHHH
Q psy12719         80 DEAIKLIEKAISIDKSCMFAY  100 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~  100 (116)
                      ++|...++++++..|++..+.
T Consensus       234 ~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        234 AKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HHHHHHHHHHHHHCcCCHHHH
Confidence            999999999999999986543

>KOG2076|consensus

Probab=99.59  E-value=8.6e-14  Score=89.96  Aligned_cols=110  Identities=15%  Similarity=0.137  Sum_probs=103.7

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      ..|++++|.+++.++++++|.++.+|..+|.+|..+|+.+++...+-.|-.++|.+...|..++....+ +|++.+|.-+
T Consensus       151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~~i~qA~~c  229 (895)
T KOG2076|consen  151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LGNINQARYC  229 (895)
T ss_pred             HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cccHHHHHHH
Confidence            348999999999999999999999999999999999999999999999999999999999999999666 9999999999


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         86 IEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      |.++++.+|.+....+..+.++.++|+...|
T Consensus       230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~A  260 (895)
T KOG2076|consen  230 YSRAIQANPSNWELIYERSSLYQKTGDLKRA  260 (895)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHhChHHHH
Confidence            9999999999999999999999999987543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.59  E-value=9e-14  Score=91.46  Aligned_cols=110  Identities=8%  Similarity=0.035  Sum_probs=103.5

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      .-.|+.++|++.+.++....|....++..+|.++...|++++|...+++++..+|.++.++..++.++.. .|++++|+.
T Consensus        26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~-~g~~~eA~~  104 (765)
T PRK10049         26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD-AGQYDEALV  104 (765)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHH
Confidence            3468999999999999988899999999999999999999999999999999999999999999999887 899999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .+++++...|+++. +..++.++...|++++|
T Consensus       105 ~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~A  135 (765)
T PRK10049        105 KAKQLVSGAPDKAN-LLALAYVYKRAGRHWDE  135 (765)
T ss_pred             HHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHH
Confidence            99999999999999 99999999999988764

>PRK15331 chaperone protein SicA; Provisional

Probab=99.58  E-value=9e-14  Score=74.75  Aligned_cols=93  Identities=11%  Similarity=-0.005  Sum_probs=86.5

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      ...|++++|...|.-....+|.+++.|+++|-++...++|++|+..|..+..++++++.+.+..|.|++. +|+.+.|..
T Consensus        48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~-l~~~~~A~~  126 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL-MRKAAKARQ  126 (165)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH-hCCHHHHHH
Confidence            4689999999999999999999999999999999999999999999999999999999999999999998 999999999


Q ss_pred             HHHHHHhcCCCcHHH
Q psy12719         85 LIEKAISIDKSCMFA   99 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~   99 (116)
                      +|..++. .|.+..+
T Consensus       127 ~f~~a~~-~~~~~~l  140 (165)
T PRK15331        127 CFELVNE-RTEDESL  140 (165)
T ss_pred             HHHHHHh-CcchHHH
Confidence            9999998 4665543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.57  E-value=1.9e-13  Score=75.41  Aligned_cols=92  Identities=15%  Similarity=0.295  Sum_probs=63.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCC--
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN--   78 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--   78 (116)
                      +...|++++|+.+|++++...|+.   ..++..+|.++...|++++|+..+.+++...|.+...+..+|.++.. .|+  
T Consensus        45 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~  123 (172)
T PRK02603         45 AQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHK-RGEKA  123 (172)
T ss_pred             HHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCChH
Confidence            345577777777777777665543   35677777777777777777777777777777777777777777655 555  


Q ss_pred             ------------HHHHHHHHHHHHhcCCCc
Q psy12719         79 ------------VDEAIKLIEKAISIDKSC   96 (116)
Q Consensus        79 ------------~~~a~~~~~~~~~~~~~~   96 (116)
                                  +.+|.+.+++++..+|++
T Consensus       124 ~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        124 EEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             hHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence                        456666666666666665

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.56  E-value=8.4e-14  Score=84.51  Aligned_cols=85  Identities=31%  Similarity=0.322  Sum_probs=80.3

Q ss_pred             HHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhh
Q psy12719         31 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR  110 (116)
Q Consensus        31 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  110 (116)
                      +...|...+..|++++|+..|++++..+|.++.+++.+|.++.. .|++++|+..+.+++.++|+++.+++.+|.++..+
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            45668888999999999999999999999999999999999888 89999999999999999999999999999999999


Q ss_pred             cccccC
Q psy12719        111 TFVVLW  116 (116)
Q Consensus       111 ~~~~~a  116 (116)
                      |++++|
T Consensus        84 g~~~eA   89 (356)
T PLN03088         84 EEYQTA   89 (356)
T ss_pred             CCHHHH
Confidence            998865

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.56  E-value=7.8e-14  Score=81.82  Aligned_cols=113  Identities=14%  Similarity=0.146  Sum_probs=102.4

Q ss_pred             ccccchhcHHHHHHHHHHHHhhCCCh-----hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhc
Q psy12719          2 IVPGDRERVEQSLKEFRNFVDTHSNV-----VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR   76 (116)
Q Consensus         2 ~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   76 (116)
                      .+|....+|++|++..++..+..+..     +..++.++..+....+.+.|+..+.++++.+|++..+-..+|.+... .
T Consensus       149 ~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-~  227 (389)
T COG2956         149 NIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELA-K  227 (389)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-c
Confidence            35677889999999999999988765     45788899999999999999999999999999999999999999888 8


Q ss_pred             CCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHhhccccc
Q psy12719         77 GNVDEAIKLIEKAISIDKSC-MFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        77 ~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~  115 (116)
                      |+|++|++.++.+++.+|.. +++...|..+|.++|+.++
T Consensus       228 g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~  267 (389)
T COG2956         228 GDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE  267 (389)
T ss_pred             cchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence            99999999999999999987 7788899999999998764

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.55  E-value=3.8e-13  Score=82.08  Aligned_cols=107  Identities=15%  Similarity=0.220  Sum_probs=98.7

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      ..++++.|++.+++..+.+|+   +...++.++...++-.+|+..+.+++...|.+...+...+..++. .++++.|+..
T Consensus       181 ~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~i  256 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALEI  256 (395)
T ss_pred             hcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHH
Confidence            356899999999999988875   556789999999999999999999999999999999999999888 8999999999


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         86 IEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .++++...|++...|..|+.+|...|++++|
T Consensus       257 Ak~av~lsP~~f~~W~~La~~Yi~~~d~e~A  287 (395)
T PF09295_consen  257 AKKAVELSPSEFETWYQLAECYIQLGDFENA  287 (395)
T ss_pred             HHHHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence            9999999999999999999999999999875

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0543|consensus

Probab=99.55  E-value=2.4e-13  Score=81.68  Aligned_cols=108  Identities=18%  Similarity=0.178  Sum_probs=94.6

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh---------------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV---------------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR   68 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   68 (116)
                      +.+.|+|..|...|++++..-+..               ..++.+++.++.+.++|..|+..+.+++..+|.+..++|..
T Consensus       218 ~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRr  297 (397)
T KOG0543|consen  218 LFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRR  297 (397)
T ss_pred             HHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHH
Confidence            567899999999999988764311               12789999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcc
Q psy12719         69 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTF  112 (116)
Q Consensus        69 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  112 (116)
                      |.++.. +|+++.|+..|++++++.|++..+...+..+.....+
T Consensus       298 G~A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~  340 (397)
T KOG0543|consen  298 GQALLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE  340 (397)
T ss_pred             HHHHHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            999888 9999999999999999999998888888777655433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.55  E-value=5.7e-13  Score=73.26  Aligned_cols=91  Identities=11%  Similarity=0.178  Sum_probs=58.0

Q ss_pred             cchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHH-------H
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML-------Q   74 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-------~   74 (116)
                      ...|++++|+..|.+++...|++   +.++..+|.++...|++++|+..+++++.++|.....+..+|.++.       .
T Consensus        46 ~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~  125 (168)
T CHL00033         46 QSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIE  125 (168)
T ss_pred             HHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHH
Confidence            34567777777777777665543   3466777777777777777777777777777777666666666655       3


Q ss_pred             hcCCHH-------HHHHHHHHHHhcCCCc
Q psy12719         75 ARGNVD-------EAIKLIEKAISIDKSC   96 (116)
Q Consensus        75 ~~~~~~-------~a~~~~~~~~~~~~~~   96 (116)
                       .|+++       +|...+++++..+|.+
T Consensus       126 -~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033        126 -QGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             -cccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence             45554       4444444555555543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.54  E-value=2.3e-14  Score=66.96  Aligned_cols=60  Identities=22%  Similarity=0.450  Sum_probs=55.1

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA   62 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~   62 (116)
                      .+...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|+++
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            356789999999999999999999999999999999999999999999999999999875

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.54  E-value=2e-13  Score=67.54  Aligned_cols=86  Identities=27%  Similarity=0.351  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719         30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ  109 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (116)
                      ++..+|.++...|++++|+..++++++..|.+..++..+|.++.. .+++++|.+.+.+++...|.++.++..++.++..
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence            577899999999999999999999999999999999999999887 8999999999999999999999999999999999


Q ss_pred             hcccccC
Q psy12719        110 RTFVVLW  116 (116)
Q Consensus       110 ~~~~~~a  116 (116)
                      .|++++|
T Consensus        81 ~~~~~~a   87 (100)
T cd00189          81 LGKYEEA   87 (100)
T ss_pred             HHhHHHH
Confidence            9887653

>KOG0548|consensus

Probab=99.54  E-value=1.9e-13  Score=84.32  Aligned_cols=103  Identities=14%  Similarity=0.127  Sum_probs=98.1

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      ..+.|+|+.|+..|..++.++|.+...+.+...++...|+|++|.+.-.+.++++|+.+..|..+|..++. +|+|++|+
T Consensus        12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~-lg~~~eA~   90 (539)
T KOG0548|consen   12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG-LGDYEEAI   90 (539)
T ss_pred             hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh-cccHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999887 99999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHH
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIE  107 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~  107 (116)
                      ..|.+.++.+|++..++..++.++
T Consensus        91 ~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   91 LAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999888887

>KOG3060|consensus

Probab=99.53  E-value=3.8e-13  Score=76.62  Aligned_cols=108  Identities=19%  Similarity=0.207  Sum_probs=52.0

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI   86 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   86 (116)
                      .++.+-|..++.+.-...|++.++....|..+...|++++|+++|...+.-+|.+..++-..-.+ .+.+|+.-+|++.+
T Consensus        65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAi-lka~GK~l~aIk~l  143 (289)
T KOG3060|consen   65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAI-LKAQGKNLEAIKEL  143 (289)
T ss_pred             hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHH-HHHcCCcHHHHHHH
Confidence            34444555555555445555555555555555555555555555555555555544443333222 12244444444444


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         87 EKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      ...++.++.++++|..++.+|...|++++
T Consensus       144 n~YL~~F~~D~EAW~eLaeiY~~~~~f~k  172 (289)
T KOG3060|consen  144 NEYLDKFMNDQEAWHELAEIYLSEGDFEK  172 (289)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhHhHHHH
Confidence            44444444444444444444444444443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.52  E-value=5.5e-13  Score=73.33  Aligned_cols=99  Identities=9%  Similarity=0.074  Sum_probs=84.8

Q ss_pred             cHHHHHHHHHHHHhhCCCh--hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHH
Q psy12719          9 RVEQSLKEFRNFVDTHSNV--VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      .+..+...+...++..+..  ...+..+|.++...|++++|+..|++++.+.|+.   +.++.++|.++.. .|++++|+
T Consensus        14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~~eA~   92 (168)
T CHL00033         14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEHTKAL   92 (168)
T ss_pred             ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCHHHHH
Confidence            4666666776665565554  5678999999999999999999999999887653   4589999999887 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEV  108 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~  108 (116)
                      ..+++++...|.....+..++.++.
T Consensus        93 ~~~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         93 EYYFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            9999999999999999999999988

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.52  E-value=1.3e-12  Score=70.21  Aligned_cols=109  Identities=18%  Similarity=0.206  Sum_probs=93.5

Q ss_pred             chhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNV   79 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~   79 (116)
                      ..++...+...++..+..+|++   ..+.+.+|.+++..|++++|...|+.++...|+.   ..+.+.++.+++. .|++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~~  101 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQY  101 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCH
Confidence            4678888888899999999988   5678889999999999999999999999987665   4578889999888 8999


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         80 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ++|+..+.. +...+-.+.++..+|.++...|++++|
T Consensus       102 d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A  137 (145)
T PF09976_consen  102 DEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEA  137 (145)
T ss_pred             HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHH
Confidence            999999966 344455677899999999999998875

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.52  E-value=1.5e-13  Score=64.75  Aligned_cols=62  Identities=23%  Similarity=0.367  Sum_probs=31.6

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR   68 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   68 (116)
                      .|++++|+..|++++..+|++..++..+|.++...|++++|...+.+++..+|+++..+..+
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            44555555555555555555555555555555555555555555555555555544444333

...

>PLN02789 farnesyltranstransferase

Probab=99.51  E-value=1.4e-12  Score=78.00  Aligned_cols=101  Identities=10%  Similarity=0.110  Sum_probs=93.9

Q ss_pred             cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcCh--hhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719          9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDF--DGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI   86 (116)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   86 (116)
                      ++++++..+.+++..+|++..+|...+.+....++.  ++++..+.+++..+|++..+|..++.++.. .|+++++++.+
T Consensus        87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~-l~~~~eeL~~~  165 (320)
T PLN02789         87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT-LGGWEDELEYC  165 (320)
T ss_pred             hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hhhHHHHHHHH
Confidence            579999999999999999999999999998888874  678999999999999999999999999766 89999999999


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHhh
Q psy12719         87 EKAISIDKSCMFAYETLGTIEVQR  110 (116)
Q Consensus        87 ~~~~~~~~~~~~~~~~l~~~~~~~  110 (116)
                      .++++.+|.+..+|...+.+....
T Consensus       166 ~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        166 HQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHHCCCchhHHHHHHHHHHhc
Confidence            999999999999999999988765

>KOG1173|consensus

Probab=99.51  E-value=2e-13  Score=84.77  Aligned_cols=73  Identities=21%  Similarity=0.376  Sum_probs=35.9

Q ss_pred             HHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy12719         31 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG  104 (116)
Q Consensus        31 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~  104 (116)
                      +.++|.++.+.+.+.+|+..+++++.+.|.++.++..+|.+|.. +|+++.|+..|.+++.+.|++..+-..|+
T Consensus       458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l-lgnld~Aid~fhKaL~l~p~n~~~~~lL~  530 (611)
T KOG1173|consen  458 LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL-LGNLDKAIDHFHKALALKPDNIFISELLK  530 (611)
T ss_pred             HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH-hcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence            44455555555555555555555555555555555555555444 45555555555555555554433333333

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=99.51  E-value=1.9e-13  Score=64.34  Aligned_cols=67  Identities=27%  Similarity=0.390  Sum_probs=61.5

Q ss_pred             HhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy12719         39 VDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI  106 (116)
Q Consensus        39 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  106 (116)
                      ...|++++|+..|++++..+|++..+++.++.+++. .|++++|...+.+++..+|+++..+..++.+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            578999999999999999999999999999999988 8999999999999999999998888777653

...

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.51  E-value=7.2e-13  Score=87.32  Aligned_cols=114  Identities=8%  Similarity=-0.069  Sum_probs=92.1

Q ss_pred             ccccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12719          2 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE   81 (116)
Q Consensus         2 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (116)
                      ++..+.|+++.|++.|.++++.+|.++.....+..++...|+.++|+.++++++...|........+|.++.. .|++++
T Consensus        42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~-~gdyd~  120 (822)
T PRK14574         42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN-EKRWDQ  120 (822)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-cCCHHH
Confidence            3456789999999999999999999864434777788888999999999999994444555555555778666 799999


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         82 AIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      |++.++++++.+|+++.++..++.++...++.++|
T Consensus       121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eA  155 (822)
T PRK14574        121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVV  155 (822)
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHH
Confidence            99999999999999998888888888888777654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.50  E-value=6.8e-14  Score=66.10  Aligned_cols=57  Identities=19%  Similarity=0.355  Sum_probs=53.9

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc-ChhhHHHHHHHHhccCC
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE-DFDGAEEYFNRSIRVDP   59 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~   59 (116)
                      .+...|++++|+..|+++++.+|+++.++.++|.++..+| ++++|+..++++++++|
T Consensus        12 ~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   12 IYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3457899999999999999999999999999999999999 79999999999999988

...

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.50  E-value=1.2e-12  Score=85.04  Aligned_cols=99  Identities=10%  Similarity=-0.049  Sum_probs=91.5

Q ss_pred             HHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719         17 FRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC   96 (116)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   96 (116)
                      ........|.+++++..+|.+....|.+++|..+++.++...|++..++..++.++.+ .+++++|...+++++..+|++
T Consensus        75 ~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~-~~~~eeA~~~~~~~l~~~p~~  153 (694)
T PRK15179         75 LLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR-QQGIEAGRAEIELYFSGGSSS  153 (694)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHhhcCCCC
Confidence            3333445588899999999999999999999999999999999999999999999777 899999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccccC
Q psy12719         97 MFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        97 ~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +..+..+|.++...|++++|
T Consensus       154 ~~~~~~~a~~l~~~g~~~~A  173 (694)
T PRK15179        154 AREILLEAKSWDEIGQSEQA  173 (694)
T ss_pred             HHHHHHHHHHHHHhcchHHH
Confidence            99999999999999999875

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.50  E-value=4.5e-13  Score=63.93  Aligned_cols=69  Identities=28%  Similarity=0.482  Sum_probs=51.8

Q ss_pred             HHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy12719         35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG  104 (116)
Q Consensus        35 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~  104 (116)
                      ..++...+++++|++++++++..+|.++..+..+|.+++. .|++.+|.+.++++++..|+++.+....+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            4566777788888888888888888888888888888776 78888888888888888777766554443

>KOG3060|consensus

Probab=99.50  E-value=1.3e-12  Score=74.47  Aligned_cols=108  Identities=10%  Similarity=0.078  Sum_probs=79.7

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|.+++|+++|+..+..+|.+..++...-.+...+|+--+|++.+..-++..+.+..+|..++.+|+. .|++++|.
T Consensus        96 lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-~~~f~kA~  174 (289)
T KOG3060|consen   96 LEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS-EGDFEKAA  174 (289)
T ss_pred             HHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-HhHHHHHH
Confidence            34567788888888888888877777666666666667777777777777777777777777777777776 67777777


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcc
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTF  112 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  112 (116)
                      -++++.+-..|.++..+..++.+++-+|.
T Consensus       175 fClEE~ll~~P~n~l~f~rlae~~Yt~gg  203 (289)
T KOG3060|consen  175 FCLEELLLIQPFNPLYFQRLAEVLYTQGG  203 (289)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence            77777777777777777777777666554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.49  E-value=1e-12  Score=68.11  Aligned_cols=88  Identities=15%  Similarity=0.027  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHH
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYE  101 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~  101 (116)
                      ++.++..|..+...|++++|+..|.+++..+|++   +.+++.+|.+++. .|++++|+..+++++...|+.   +.++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKSPKAPDALL   80 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence            4567899999999999999999999999998876   5689999999888 899999999999999998875   67899


Q ss_pred             HHHHHHHhhcccccC
Q psy12719        102 TLGTIEVQRTFVVLW  116 (116)
Q Consensus       102 ~l~~~~~~~~~~~~a  116 (116)
                      .+|.++...|++++|
T Consensus        81 ~~~~~~~~~~~~~~A   95 (119)
T TIGR02795        81 KLGMSLQELGDKEKA   95 (119)
T ss_pred             HHHHHHHHhCChHHH
Confidence            999999999987754

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.48  E-value=3e-12  Score=73.75  Aligned_cols=98  Identities=18%  Similarity=0.219  Sum_probs=88.4

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcC
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARG   77 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~   77 (116)
                      +...|+|..|...|...++..|++   +++++.||.+++.+|++++|...|..+.+..|++   ++.++.+|.+... +|
T Consensus       151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~-l~  229 (262)
T COG1729         151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR-LG  229 (262)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH-hc
Confidence            346789999999999999999987   6799999999999999999999999999988766   6789999999777 99


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHH
Q psy12719         78 NVDEAIKLIEKAISIDKSCMFAYET  102 (116)
Q Consensus        78 ~~~~a~~~~~~~~~~~~~~~~~~~~  102 (116)
                      +.++|...|+++++..|+.+.+...
T Consensus       230 ~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         230 NTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            9999999999999999998765443

>KOG4162|consensus

Probab=99.48  E-value=8.5e-13  Score=84.44  Aligned_cols=110  Identities=17%  Similarity=0.114  Sum_probs=96.7

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH-
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK-   84 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-   84 (116)
                      ..+.-+++.-++.++-..+|.++.+|+..|.++...|.+.+|.+.|..++.++|+++.....+|.++.. .|+..-|.. 
T Consensus       662 ~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle-~G~~~la~~~  740 (799)
T KOG4162|consen  662 LSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE-LGSPRLAEKR  740 (799)
T ss_pred             hcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hCCcchHHHH
Confidence            445667778888888889999999999999999999999999999999999999999999999999887 788777777 


Q ss_pred             -HHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         85 -LIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        85 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                       .+..+++.+|.++++|+.+|.++..+|+.++|
T Consensus       741 ~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A  773 (799)
T KOG4162|consen  741 SLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA  773 (799)
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence             89999999999999999999999999988754

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.47  E-value=1.6e-12  Score=71.78  Aligned_cols=87  Identities=10%  Similarity=0.161  Sum_probs=78.0

Q ss_pred             ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q psy12719         26 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET  102 (116)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  102 (116)
                      ....+++.+|..+...|++++|+.+|++++...|+.   ..++..+|.++.. .|++++|+..+.+++...|.+...+..
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            345678999999999999999999999999887654   5689999999888 899999999999999999999999999


Q ss_pred             HHHHHHhhccc
Q psy12719        103 LGTIEVQRTFV  113 (116)
Q Consensus       103 l~~~~~~~~~~  113 (116)
                      +|.++...|+.
T Consensus       112 lg~~~~~~g~~  122 (172)
T PRK02603        112 IAVIYHKRGEK  122 (172)
T ss_pred             HHHHHHHcCCh
Confidence            99999887764

>KOG0550|consensus

Probab=99.45  E-value=1.1e-12  Score=79.21  Aligned_cols=109  Identities=18%  Similarity=0.263  Sum_probs=75.3

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhH------------HHHHHHHHHHhhcChhhHHHHHHHHhccCCCC----HHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVE------------ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----ASLYVHRA   69 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~   69 (116)
                      ...+.+.++..|++++.++|++.+            .+...|+-.++.|++..|.+.|..+|.++|.+    +..|.+++
T Consensus       215 y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra  294 (486)
T KOG0550|consen  215 YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRA  294 (486)
T ss_pred             cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhH
Confidence            345667777777777777776532            45556666677777777777777777777765    34566777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         70 MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        70 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      .+..+ +|+.++|+.....++.++|....++...|.|+..++++++
T Consensus       295 ~v~~r-Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~  339 (486)
T KOG0550|consen  295 LVNIR-LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEE  339 (486)
T ss_pred             hhhcc-cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            77666 6777777777777777777777777777777777766654

>KOG1156|consensus

Probab=99.44  E-value=1.3e-12  Score=82.38  Aligned_cols=109  Identities=17%  Similarity=0.162  Sum_probs=98.8

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      ...++|...++..+..++.+|++++..-..|..+...|+.++|....+.+++.++.+..+|+.+|.++-. .++|++|++
T Consensus        18 yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~-dK~Y~eaiK   96 (700)
T KOG1156|consen   18 YETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS-DKKYDEAIK   96 (700)
T ss_pred             HHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh-hhhHHHHHH
Confidence            4567888999999999999999999999999999999999999999999999999999999999998554 799999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      +|+.|+.+.|++...|..++....++++++
T Consensus        97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~  126 (700)
T KOG1156|consen   97 CYRNALKIEKDNLQILRDLSLLQIQMRDYE  126 (700)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999888875

>KOG4234|consensus

Probab=99.43  E-value=7.5e-12  Score=69.49  Aligned_cols=101  Identities=16%  Similarity=0.178  Sum_probs=89.7

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChh-----HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVV-----EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV   79 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   79 (116)
                      +..|+|.+|...|..++..+|..+     ..+.+.|.+..+++.++.|+..+.++|.++|....++..++.+|-+ ...+
T Consensus       106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek-~ek~  184 (271)
T KOG4234|consen  106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK-MEKY  184 (271)
T ss_pred             hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-hhhH
Confidence            567999999999999999998764     4678889999999999999999999999999999999999999877 8999


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy12719         80 DEAIKLIEKAISIDKSCMFAYETLGTI  106 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~  106 (116)
                      ++|++.|.+.++.+|....+...++++
T Consensus       185 eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  185 EEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            999999999999999876655554443

>TIGR00540 hemY_coli hemY protein

Probab=99.43  E-value=7.8e-12  Score=77.39  Aligned_cols=111  Identities=9%  Similarity=0.033  Sum_probs=99.5

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH-HHHHHHHHHHHHhcCCHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA-SLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      ...|+++.|.+.+.++.+..|+....+...|.+...+|+++.|..++.++.+..|++. .+....+.++.. .|++++|.
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~-~~~~~~Al  173 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA-QNELHAAR  173 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH-CCCHHHHH
Confidence            4568999999999999999888888888889999999999999999999999888875 466667888888 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ..+++..+..|+++.++..++.++...|++++|
T Consensus       174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a  206 (409)
T TIGR00540       174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQAL  206 (409)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Confidence            999999999999999999999999999998753

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1129|consensus

Probab=99.43  E-value=1.6e-12  Score=76.95  Aligned_cols=111  Identities=13%  Similarity=0.134  Sum_probs=82.6

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCC---CCHHHHHHHHHHHHHhcCCHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP---ENASLYVHRAMLMLQARGNVDE   81 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~   81 (116)
                      .-.++.+-|+.+|.+.+...-.+++.++++|.+++..++++-++..|++++....   .-.++|+++|.+... .|++..
T Consensus       335 fY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~-iGD~nl  413 (478)
T KOG1129|consen  335 FYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVT-IGDFNL  413 (478)
T ss_pred             ccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEe-ccchHH
Confidence            3344555566666666666556666777888888888888888888888876543   235678888888666 688888


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         82 AIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      |.++|+-++..++++.+++.+|+.+..+.|+.++|
T Consensus       414 A~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A  448 (478)
T KOG1129|consen  414 AKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA  448 (478)
T ss_pred             HHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH
Confidence            88888888888888888888888888888877654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.43  E-value=2.1e-13  Score=66.81  Aligned_cols=75  Identities=24%  Similarity=0.336  Sum_probs=65.7

Q ss_pred             hhcChhhHHHHHHHHhccCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         40 DQEDFDGAEEYFNRSIRVDPE--NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        40 ~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .+|+++.|+..+++++...|.  +...++.+|.++++ .|++++|+..+++ ...+|.++.....+|.++..+|++++|
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            368999999999999999995  46678889999998 9999999999999 888888888889999999999999875

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=99.42  E-value=1.6e-12  Score=62.01  Aligned_cols=68  Identities=19%  Similarity=0.270  Sum_probs=62.4

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM   70 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   70 (116)
                      ++...+++++|++.+++++..+|+++..+..+|.++...|++++|+..++++++..|+++.+....+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            46778999999999999999999999999999999999999999999999999999999887665543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.41  E-value=4.7e-12  Score=76.85  Aligned_cols=87  Identities=18%  Similarity=0.161  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH----HHHHHHH
Q psy12719         29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM----FAYETLG  104 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~  104 (116)
                      .+...+|.++..+|++++|...+++++..+|+++.++..+|.+++. .|++++|+..+++++...|..+    ..+..++
T Consensus       115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la  193 (355)
T cd05804         115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA  193 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence            3445567777888899999999999999999988888888988877 8999999999999888876432    3466788


Q ss_pred             HHHHhhcccccC
Q psy12719        105 TIEVQRTFVVLW  116 (116)
Q Consensus       105 ~~~~~~~~~~~a  116 (116)
                      .++...|++++|
T Consensus       194 ~~~~~~G~~~~A  205 (355)
T cd05804         194 LFYLERGDYEAA  205 (355)
T ss_pred             HHHHHCCCHHHH
Confidence            888888888764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK15331 chaperone protein SicA; Provisional

Probab=99.41  E-value=2.6e-12  Score=69.17  Aligned_cols=90  Identities=16%  Similarity=0.067  Sum_probs=82.5

Q ss_pred             ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy12719         26 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGT  105 (116)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~  105 (116)
                      +..+..+..|.-++..|++++|...|+-+...+|.++..|+.+|.++.. ++++++|+..|..+..+++++|...+..|.
T Consensus        35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq  113 (165)
T PRK15331         35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDYRPVFFTGQ  113 (165)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence            3455678889999999999999999999999999999999999999665 899999999999999999999999999999


Q ss_pred             HHHhhcccccC
Q psy12719        106 IEVQRTFVVLW  116 (116)
Q Consensus       106 ~~~~~~~~~~a  116 (116)
                      |+..+|+.+.|
T Consensus       114 C~l~l~~~~~A  124 (165)
T PRK15331        114 CQLLMRKAAKA  124 (165)
T ss_pred             HHHHhCCHHHH
Confidence            99999988764

>KOG0495|consensus

Probab=99.41  E-value=8.9e-12  Score=79.29  Aligned_cols=111  Identities=14%  Similarity=0.156  Sum_probs=103.0

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      ..+++.++|+..++++++..|.....|+.+|+++.+.++.+.|...|...++..|.++..|..++.+--+ .|+..+|..
T Consensus       662 r~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk-~~~~~rAR~  740 (913)
T KOG0495|consen  662 RYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK-DGQLVRARS  740 (913)
T ss_pred             HHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH-hcchhhHHH
Confidence            3467889999999999999999999999999999999999999999999999999999999999999666 789999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .+.++.-.+|++...|.....+....|+.+.|
T Consensus       741 ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a  772 (913)
T KOG0495|consen  741 ILDRARLKNPKNALLWLESIRMELRAGNKEQA  772 (913)
T ss_pred             HHHHHHhcCCCcchhHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999888877643

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.41  E-value=5.6e-12  Score=76.51  Aligned_cols=90  Identities=16%  Similarity=0.193  Sum_probs=67.4

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH----HHHHHHHHHHHHhcCCH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA----SLYVHRAMLMLQARGNV   79 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~   79 (116)
                      +...|++++|+..++++++..|+++.++..+|.++...|++++|+..+++++...|.++    ..+..++.++.. .|++
T Consensus       124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~-~G~~  202 (355)
T cd05804         124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE-RGDY  202 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH-CCCH
Confidence            34567788888888888888888877777888888888888888888888887765432    245567777666 7888


Q ss_pred             HHHHHHHHHHHhcCC
Q psy12719         80 DEAIKLIEKAISIDK   94 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~   94 (116)
                      ++|...+++++...|
T Consensus       203 ~~A~~~~~~~~~~~~  217 (355)
T cd05804         203 EAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHHHhcccc
Confidence            888888888776655

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2003|consensus

Probab=99.41  E-value=5.4e-12  Score=77.75  Aligned_cols=111  Identities=14%  Similarity=0.058  Sum_probs=101.4

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      ...|++++|.+.|.+++.-+..+..+++++|..+..+|+.++|+.+|-+.-.+--++..+++.++.+|-. +.+..+|++
T Consensus       501 f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~-led~aqaie  579 (840)
T KOG2003|consen  501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL-LEDPAQAIE  579 (840)
T ss_pred             eecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhCHHHHHH
Confidence            3468999999999999999999999999999999999999999999998877777899999999999766 899999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ++.++..+-|++|.++..|+.+|-+.|+-.+|
T Consensus       580 ~~~q~~slip~dp~ilskl~dlydqegdksqa  611 (840)
T KOG2003|consen  580 LLMQANSLIPNDPAILSKLADLYDQEGDKSQA  611 (840)
T ss_pred             HHHHhcccCCCCHHHHHHHHHHhhcccchhhh
Confidence            99999999999999999999999988876543

>KOG2002|consensus

Probab=99.39  E-value=9.2e-13  Score=86.05  Aligned_cols=108  Identities=13%  Similarity=0.164  Sum_probs=74.0

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI   86 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   86 (116)
                      .+.+++|++.|.++++.+|.+.-+-.++|.++...|++.+|+.+|.+...-..+.+.+|.++|.|+.. +|+|..|++.|
T Consensus       625 kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e-~~qy~~AIqmY  703 (1018)
T KOG2002|consen  625 KKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE-QGQYRLAIQMY  703 (1018)
T ss_pred             HHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH-HHHHHHHHHHH
Confidence            45567777777777777777777777777777777777777777777666555666677777777666 67777777777


Q ss_pred             HHHHhcCC--CcHHHHHHHHHHHHhhccccc
Q psy12719         87 EKAISIDK--SCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        87 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      +.++..+-  +++.++..||.++...|.+.+
T Consensus       704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~e  734 (1018)
T KOG2002|consen  704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQE  734 (1018)
T ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence            77766542  346666677777666665543

>KOG4648|consensus

Probab=99.39  E-value=2.8e-12  Score=76.43  Aligned_cols=103  Identities=18%  Similarity=0.139  Sum_probs=94.1

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      .|+++|.|++|+++|.+++..+|.++..+.+.+..|++.+.|..|...+..++.++.....+|..++.+-.. +|+..+|
T Consensus       106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~-Lg~~~EA  184 (536)
T KOG4648|consen  106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES-LGNNMEA  184 (536)
T ss_pred             hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH-HhhHHHH
Confidence            367899999999999999999999999999999999999999999999999999999999999999999776 8999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHH
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTI  106 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~  106 (116)
                      .+.++.++.+.|++.++...++.+
T Consensus       185 KkD~E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  185 KKDCETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             HHhHHHHHhhCcccHHHHHHHHHh
Confidence            999999999999987766655554

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=2.8e-11  Score=70.60  Aligned_cols=93  Identities=17%  Similarity=0.158  Sum_probs=85.1

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhh---cChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ---EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV   79 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   79 (116)
                      +|...|+++.|...|.+++++.|++++.+..+|.++..+   ....++...+++++..+|.+..+.+.+|..++. .|++
T Consensus       165 ~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe-~g~~  243 (287)
T COG4235         165 AYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE-QGDY  243 (287)
T ss_pred             HHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-cccH
Confidence            366789999999999999999999999999999988754   356789999999999999999999999999888 8999


Q ss_pred             HHHHHHHHHHHhcCCCc
Q psy12719         80 DEAIKLIEKAISIDKSC   96 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~   96 (116)
                      .+|...++..++..|.+
T Consensus       244 ~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         244 AEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHHHHHHHHHhcCCCC
Confidence            99999999999998765

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.39  E-value=5.9e-12  Score=77.22  Aligned_cols=69  Identities=14%  Similarity=0.206  Sum_probs=64.8

Q ss_pred             hCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         23 THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS---LYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      .+|+++..++++|.+++..|++++|+..|++++.++|++..   +|+++|.+|.. +|++++|+..++++++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence            45888999999999999999999999999999999999985   49999999887 99999999999999997

>TIGR00540 hemY_coli hemY protein

Probab=99.39  E-value=1.2e-11  Score=76.53  Aligned_cols=111  Identities=9%  Similarity=-0.029  Sum_probs=92.2

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHH--HHHHHHHHhhcChhhHHHHHHHHhccCCCCH--HHHHHHHHHHHHhcCCH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEAC--TLFAQVLVDQEDFDGAEEYFNRSIRVDPENA--SLYVHRAMLMLQARGNV   79 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~   79 (116)
                      +...|++++|.+.++++++..|++....  ..........++.+.+...++++++..|+++  .....+|.++++ .|++
T Consensus       273 l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~-~~~~  351 (409)
T TIGR00540       273 LIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK-HGEF  351 (409)
T ss_pred             HHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-cccH
Confidence            4567899999999999999999987531  2233333456888999999999999999999  889999999888 8999


Q ss_pred             HHHHHHHH--HHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         80 DEAIKLIE--KAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        80 ~~a~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ++|.+.|+  .+++..|+... +..+|.++...|+.++|
T Consensus       352 ~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A  389 (409)
T TIGR00540       352 IEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEA  389 (409)
T ss_pred             HHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHH
Confidence            99999999  57778888766 55999999999987764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.38  E-value=3.3e-11  Score=76.32  Aligned_cols=109  Identities=17%  Similarity=0.188  Sum_probs=85.2

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc--------ChhhHHHHHHHHhcc--CCCCHHHHHHHHHHHHHh
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE--------DFDGAEEYFNRSIRV--DPENASLYVHRAMLMLQA   75 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~   75 (116)
                      ..++...|+.+|+++++.+|+.+.++-.++.++....        +...+.....+++..  +|..+.++..+|..+.. 
T Consensus       354 ~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~-  432 (517)
T PRK10153        354 DAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV-  432 (517)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh-
Confidence            3456889999999999999999888888777765432        234555556665553  67777888888888776 


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         76 RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        76 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .|++++|...+++++.++|+ ..+|..+|.++...|++++|
T Consensus       433 ~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA  472 (517)
T PRK10153        433 KGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLA  472 (517)
T ss_pred             cCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHH
Confidence            79999999999999999985 67899999999999988764

>KOG1128|consensus

Probab=99.37  E-value=3.7e-12  Score=81.30  Aligned_cols=110  Identities=11%  Similarity=0.123  Sum_probs=101.4

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      +.++|+++.+.++..++++|-....|+.+|.+..+.++++.|..+|.+++..+|++..+|.+++..|.. .++-.+|...
T Consensus       497 ~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-~~~k~ra~~~  575 (777)
T KOG1128|consen  497 SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-LKKKKRAFRK  575 (777)
T ss_pred             cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH-HhhhHHHHHH
Confidence            468999999999999999999999999999999999999999999999999999999999999999888 8999999999


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         86 IEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.++++.+-++..+|.+...+....|.+++|
T Consensus       576 l~EAlKcn~~~w~iWENymlvsvdvge~eda  606 (777)
T KOG1128|consen  576 LKEALKCNYQHWQIWENYMLVSVDVGEFEDA  606 (777)
T ss_pred             HHHHhhcCCCCCeeeechhhhhhhcccHHHH
Confidence            9999999988888888888888888877653

>PRK11906 transcriptional regulator; Provisional

Probab=99.36  E-value=4.9e-11  Score=73.39  Aligned_cols=106  Identities=11%  Similarity=0.092  Sum_probs=62.0

Q ss_pred             cHHHHHHHHHHHH---hhCCChhHHHHHHHHHHHhh---------cChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhc
Q psy12719          9 RVEQSLKEFRNFV---DTHSNVVEACTLFAQVLVDQ---------EDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR   76 (116)
Q Consensus         9 ~~~~A~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   76 (116)
                      ....|..+|.+++   ..+|+...++..++.+++..         .+..+|....++++.++|.++.++..+|.+... .
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL-S  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-h
Confidence            3455566666666   66666666666665555432         233455555666666666666666666665444 4


Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         77 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        77 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      ++++.|...|++++.++|+.+.+|+..|.+..-.|+.++
T Consensus       352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~  390 (458)
T PRK11906        352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEE  390 (458)
T ss_pred             cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Confidence            556666666666666666666666666666655555443

>KOG1129|consensus

Probab=99.35  E-value=3.8e-12  Score=75.36  Aligned_cols=106  Identities=18%  Similarity=0.246  Sum_probs=55.0

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI   86 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   86 (116)
                      ++++++|.++|+.+++.+|.+.++.-.+|..|+..++.+-|+.+|++.+++.-.++..+.++|.|.+. .++++-+...+
T Consensus       303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y-aqQ~D~~L~sf  381 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY-AQQIDLVLPSF  381 (478)
T ss_pred             HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh-hcchhhhHHHH
Confidence            44455555555555555555554444444445555555555555555555555555555555555544 45555555555


Q ss_pred             HHHHhcCC--C-cHHHHHHHHHHHHhhccc
Q psy12719         87 EKAISIDK--S-CMFAYETLGTIEVQRTFV  113 (116)
Q Consensus        87 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~  113 (116)
                      ++++....  + -.++|++++.+....||+
T Consensus       382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~  411 (478)
T KOG1129|consen  382 QRALSTATQPGQAADVWYNLGFVAVTIGDF  411 (478)
T ss_pred             HHHHhhccCcchhhhhhhccceeEEeccch
Confidence            55555422  1 144555555555555544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.35  E-value=3e-11  Score=79.89  Aligned_cols=106  Identities=9%  Similarity=0.023  Sum_probs=71.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|++.|+++++.+|+++.++..++.++...++.++|+..++++...+|..... ..++.++.. .++..+|+
T Consensus       112 y~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~-~~~~~~AL  189 (822)
T PRK14574        112 YRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA-TDRNYDAL  189 (822)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh-cchHHHHH
Confidence            4456777777777777777777777777777777777777777777777777777764443 334444333 46665677


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRT  111 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~  111 (116)
                      +.++++++.+|++..++..+..++...|
T Consensus       190 ~~~ekll~~~P~n~e~~~~~~~~l~~~~  217 (822)
T PRK14574        190 QASSEAVRLAPTSEEVLKNHLEILQRNR  217 (822)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            7777777777777777666666665544

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.35  E-value=3.9e-11  Score=70.12  Aligned_cols=87  Identities=16%  Similarity=0.081  Sum_probs=76.6

Q ss_pred             HHHHHHHHHH-HhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHH
Q psy12719         29 EACTLFAQVL-VDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYE  101 (116)
Q Consensus        29 ~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~  101 (116)
                      ...+..+..+ ...|++++|+..|+..+...|++   +.+++.+|.+++. .|++++|+..|++++...|++   +.+++
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            4566777765 56799999999999999999998   5799999999998 899999999999999887764   88999


Q ss_pred             HHHHHHHhhcccccC
Q psy12719        102 TLGTIEVQRTFVVLW  116 (116)
Q Consensus       102 ~l~~~~~~~~~~~~a  116 (116)
                      .+|.++..+|++++|
T Consensus       222 klg~~~~~~g~~~~A  236 (263)
T PRK10803        222 KVGVIMQDKGDTAKA  236 (263)
T ss_pred             HHHHHHHHcCCHHHH
Confidence            999999999988764

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.34  E-value=7.5e-11  Score=62.34  Aligned_cols=94  Identities=17%  Similarity=0.235  Sum_probs=79.9

Q ss_pred             cchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH---HHHHHHHHHHHHhcCC
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA---SLYVHRAMLMLQARGN   78 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~   78 (116)
                      .+.|+|.+|++.|+......|..   ..+.+.++.+++..+++++|+..+++-++++|.++   .+++..|.+++. +..
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~-~~~   99 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE-QDE   99 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH-Hhh
Confidence            45789999999999999888765   56888999999999999999999999999998874   478888988877 554


Q ss_pred             ---------------HHHHHHHHHHHHhcCCCcHHH
Q psy12719         79 ---------------VDEAIKLIEKAISIDKSCMFA   99 (116)
Q Consensus        79 ---------------~~~a~~~~~~~~~~~~~~~~~   99 (116)
                                     ...|...|++.+...|++..+
T Consensus       100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen  100 GSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             hHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence                           788999999999999987543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.34  E-value=1.2e-10  Score=72.03  Aligned_cols=109  Identities=13%  Similarity=0.056  Sum_probs=84.9

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHH-HHHHHHHHHHhcCCHHHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL-YVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      .|+|++|++...+.-+..+.....+...+.....+|+++.|..++.++.+.+|++..+ ....+..+.. .|++++|...
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~-~g~~~~Al~~  175 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA-RNENHAARHG  175 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-CCCHHHHHHH
Confidence            5888888877776555433323334444666689999999999999999988887543 3444777777 8999999999


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         86 IEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +++..+.+|+++.++..++.++...|++++|
T Consensus       176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a  206 (398)
T PRK10747        176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL  206 (398)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence            9999999999999999999999999988753

>KOG1173|consensus

Probab=99.33  E-value=8.9e-12  Score=77.71  Aligned_cols=111  Identities=14%  Similarity=0.100  Sum_probs=99.7

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      ...|++++|..+|.++..++|..+.+|...|.++...++.+.|+.+|.+|-++-|..-.....+|.-|.+ .+++..|.+
T Consensus       323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~-t~n~kLAe~  401 (611)
T KOG1173|consen  323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR-TNNLKLAEK  401 (611)
T ss_pred             HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH-hccHHHHHH
Confidence            4458899999999999999999999999999999999999999999999999998887777888887666 899999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .+.+++.+.|.+|.+...+|.+.+..+.+.+|
T Consensus       402 Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A  433 (611)
T KOG1173|consen  402 FFKQALAIAPSDPLVLHELGVVAYTYEEYPEA  433 (611)
T ss_pred             HHHHHHhcCCCcchhhhhhhheeehHhhhHHH
Confidence            99999999999999999999998877776654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.33  E-value=7.7e-11  Score=61.13  Aligned_cols=87  Identities=21%  Similarity=0.272  Sum_probs=74.3

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC---CHHHHHHHHHHHHHhcC
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE---NASLYVHRAMLMLQARG   77 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~   77 (116)
                      +...|+.++|+..|++++......   ..++..+|.++...|++++|...+++++...|+   +..+...++.++.. .|
T Consensus        11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~-~g   89 (120)
T PF12688_consen   11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN-LG   89 (120)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH-CC
Confidence            456789999999999999876443   568889999999999999999999999998888   67777778888777 89


Q ss_pred             CHHHHHHHHHHHHh
Q psy12719         78 NVDEAIKLIEKAIS   91 (116)
Q Consensus        78 ~~~~a~~~~~~~~~   91 (116)
                      ++++|++.+..++.
T Consensus        90 r~~eAl~~~l~~la  103 (120)
T PF12688_consen   90 RPKEALEWLLEALA  103 (120)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999988775

>KOG0550|consensus

Probab=99.33  E-value=1.8e-11  Score=74.14  Aligned_cols=90  Identities=16%  Similarity=0.155  Sum_probs=84.0

Q ss_pred             cchhcHHHHHHHHHHHHhhCCCh----hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNV----VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD   80 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (116)
                      .+.|.+..|.++|..++.++|++    +..+.+++.+..+.|+..+|+..++.++.++|....++...|.|++. +++++
T Consensus       260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~-le~~e  338 (486)
T KOG0550|consen  260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA-LEKWE  338 (486)
T ss_pred             hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH-HHHHH
Confidence            46799999999999999999987    45788999999999999999999999999999999999999999888 99999


Q ss_pred             HHHHHHHHHHhcCCC
Q psy12719         81 EAIKLIEKAISIDKS   95 (116)
Q Consensus        81 ~a~~~~~~~~~~~~~   95 (116)
                      +|++.++++++...+
T Consensus       339 ~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  339 EAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHhhccc
Confidence            999999999998766

>KOG4162|consensus

Probab=99.33  E-value=2.4e-11  Score=78.05  Aligned_cols=93  Identities=17%  Similarity=0.260  Sum_probs=86.3

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHH--HHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEE--YFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      ...|.+.+|.+.|..++..+|+++.....+|.++...|+..-|..  .+..+++++|.+..+|+.+|.++-. .|+.++|
T Consensus       695 ~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~-~Gd~~~A  773 (799)
T KOG4162|consen  695 EVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK-LGDSKQA  773 (799)
T ss_pred             HHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-ccchHHH
Confidence            457889999999999999999999999999999999999888887  9999999999999999999999555 9999999


Q ss_pred             HHHHHHHHhcCCCcHH
Q psy12719         83 IKLIEKAISIDKSCMF   98 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~   98 (116)
                      .++|..++++.+.+|.
T Consensus       774 aecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  774 AECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHHHhhccCCCc
Confidence            9999999999888763

>KOG1156|consensus

Probab=99.33  E-value=3.4e-11  Score=76.20  Aligned_cols=112  Identities=7%  Similarity=0.086  Sum_probs=105.0

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      ....|+.++|.+....++..++.+..+|-.+|.++...++|++|+.+|+.|+...|++..++..++....+ +++++...
T Consensus        51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q-mRd~~~~~  129 (700)
T KOG1156|consen   51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ-MRDYEGYL  129 (700)
T ss_pred             hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHhhhhHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999888 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ..-.+.++..|+....|..++..+...|++..|
T Consensus       130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A  162 (700)
T KOG1156|consen  130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA  162 (700)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988887643

>KOG1840|consensus

Probab=99.32  E-value=1.6e-11  Score=77.07  Aligned_cols=113  Identities=18%  Similarity=0.189  Sum_probs=93.8

Q ss_pred             cccchhcHHHHHHHHHHHHhh--------CCChhHHHHHHHHHHHhhcChhhHHHHHHHHhcc--------CCCCHHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDT--------HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--------DPENASLYV   66 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~   66 (116)
                      .|..+|+|+.|+..++.+++.        .|.-......+|.+|...+++.+|+..|++++.+        +|..+.++.
T Consensus       208 ~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~  287 (508)
T KOG1840|consen  208 MYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLN  287 (508)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            456789999999999999998        4555566667999999999999999999999865        344567899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHhhcccccC
Q psy12719         67 HRAMLMLQARGNVDEAIKLIEKAISID--------KSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        67 ~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +++.+|+. .|++++|..++++++++.        |.-...+..++.++..++++++|
T Consensus       288 nLa~ly~~-~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea  344 (508)
T KOG1840|consen  288 NLAVLYYK-QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEA  344 (508)
T ss_pred             HHHHHHhc-cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHH
Confidence            99999988 899999999999999762        23356677888888888887764

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.31  E-value=1.4e-10  Score=68.75  Aligned_cols=110  Identities=18%  Similarity=0.093  Sum_probs=89.7

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc--ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE--DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD   80 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (116)
                      ++..+++++.|.+.++.+.+.+.++.-+....+++....|  .+.+|...|+......+.++..+..++.++.. +|+++
T Consensus       140 i~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~~~~  218 (290)
T PF04733_consen  140 ILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LGHYE  218 (290)
T ss_dssp             HHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-HH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCHH
Confidence            3456789999999999998888777666656666655555  69999999999988888899999999999888 99999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccc
Q psy12719         81 EAIKLIEKAISIDKSCMFAYETLGTIEVQRTFV  113 (116)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  113 (116)
                      +|.+.+.+++..+|+++.++.+++.+...+|+.
T Consensus       219 eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  219 EAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999998888876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2076|consensus

Probab=99.31  E-value=6.8e-11  Score=77.04  Aligned_cols=109  Identities=17%  Similarity=0.133  Sum_probs=84.1

Q ss_pred             hhcHHHHHHHHHHHHhhCC-ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCC-CCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHS-NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP-ENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      ..+..+++..+..--...| +.++.++.++..+...|++.+|+.++..++...+ ++..+|+.+|.|+.. +|.+++|++
T Consensus       392 ~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~-l~e~e~A~e  470 (895)
T KOG2076|consen  392 ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME-LGEYEEAIE  470 (895)
T ss_pred             ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH-HhhHHHHHH
Confidence            3344444444433222223 3467888899999999999999999998887776 446788999999776 899999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .|.+++...|++.++...|+.++.++|++++|
T Consensus       471 ~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~Eka  502 (895)
T KOG2076|consen  471 FYEKVLILAPDNLDARITLASLYQQLGNHEKA  502 (895)
T ss_pred             HHHHHHhcCCCchhhhhhHHHHHHhcCCHHHH
Confidence            99999999999999999999999999988764

>KOG1840|consensus

Probab=99.31  E-value=1.6e-11  Score=77.05  Aligned_cols=113  Identities=20%  Similarity=0.262  Sum_probs=93.2

Q ss_pred             cccchhcHHHHHHHHHHHHhhC--------CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC--------CCCHHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTH--------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--------PENASLYV   66 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~   66 (116)
                      .|..++++.+|+..|++++.+.        |.-+.++.++|.+|...|++++|..++.+++.+.        |+-...+.
T Consensus       250 ~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~  329 (508)
T KOG1840|consen  250 VYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS  329 (508)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence            4677899999999999999764        3335689999999999999999999999998764        23345677


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHhhcccccC
Q psy12719         67 HRAMLMLQARGNVDEAIKLIEKAISI--------DKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        67 ~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +++.++.. ++++++|+..+++++++        ++..+..+.++|.++..+|++++|
T Consensus       330 ~~~~~~~~-~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea  386 (508)
T KOG1840|consen  330 ELAAILQS-MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEA  386 (508)
T ss_pred             HHHHHHHH-hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHH
Confidence            88888666 89999999999999876        223467889999999999999875

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.31  E-value=4e-11  Score=79.34  Aligned_cols=109  Identities=8%  Similarity=-0.012  Sum_probs=95.2

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH-------------------HH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA-------------------SL   64 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------------~~   64 (116)
                      +...+++++++..++..++.+|+...+++.+|.++...+++.++.-+  .++...+.+.                   .+
T Consensus        41 ~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~A  118 (906)
T PRK14720         41 YKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLA  118 (906)
T ss_pred             HHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHH
Confidence            34678999999999999999999999999999999999888877666  6665555554                   79


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         65 YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        65 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ++.+|.||-+ +|+.++|...++++++.+|+++.+..++|-.+... +.++|
T Consensus       119 l~~LA~~Ydk-~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA  168 (906)
T PRK14720        119 LRTLAEAYAK-LNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA  168 (906)
T ss_pred             HHHHHHHHHH-cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence            9999999666 99999999999999999999999999999999887 76654

>PRK11906 transcriptional regulator; Provisional

Probab=99.30  E-value=2.9e-10  Score=70.12  Aligned_cols=90  Identities=14%  Similarity=0.163  Sum_probs=84.8

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI   86 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   86 (116)
                      ..+..+|....+++++.+|.++.++..+|.+....++++.|...|++++.++|+++.+++..|..++. .|+.++|.+.+
T Consensus       317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~i  395 (458)
T PRK11906        317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARICI  395 (458)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999887 89999999999


Q ss_pred             HHHHhcCCCcH
Q psy12719         87 EKAISIDKSCM   97 (116)
Q Consensus        87 ~~~~~~~~~~~   97 (116)
                      +++++++|...
T Consensus       396 ~~alrLsP~~~  406 (458)
T PRK11906        396 DKSLQLEPRRR  406 (458)
T ss_pred             HHHhccCchhh
Confidence            99999999763

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.30  E-value=1e-10  Score=72.32  Aligned_cols=107  Identities=10%  Similarity=0.064  Sum_probs=88.1

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      ...|+.++|...++++++..| ++.....++.+  ..++.++++...++.++..|+++..+..+|.++.. .+++++|.+
T Consensus       274 ~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~-~~~~~~A~~  349 (398)
T PRK10747        274 IECDDHDTAQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK-HGEWQEASL  349 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHHHH
Confidence            457889999999999998444 45544455544  45889999999999999999999999999999887 899999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .|+++++..|++.. +..++.++...|+.++|
T Consensus       350 ~le~al~~~P~~~~-~~~La~~~~~~g~~~~A  380 (398)
T PRK10747        350 AFRAALKQRPDAYD-YAWLADALDRLHKPEEA  380 (398)
T ss_pred             HHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHH
Confidence            99999999998764 56899999998887764

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.29  E-value=3.6e-10  Score=65.59  Aligned_cols=91  Identities=11%  Similarity=0.078  Sum_probs=76.7

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhH---HHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcC-
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVE---ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARG-   77 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~-   77 (116)
                      ...|+|++|++.|++.+...|.++.   +.+.+|.++++.+++++|+..+++.++.+|++   +.+++.+|.++.. .+ 
T Consensus        43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~-~~~  121 (243)
T PRK10866         43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA-LDD  121 (243)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh-cch
Confidence            4568999999999999999998855   45899999999999999999999999999877   4578888987533 22 


Q ss_pred             --------------C---HHHHHHHHHHHHhcCCCc
Q psy12719         78 --------------N---VDEAIKLIEKAISIDKSC   96 (116)
Q Consensus        78 --------------~---~~~a~~~~~~~~~~~~~~   96 (116)
                                    +   ..+|+..+++.++..|++
T Consensus       122 ~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S  157 (243)
T PRK10866        122 SALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS  157 (243)
T ss_pred             hhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC
Confidence                          1   357889999999999987

>KOG0624|consensus

Probab=99.29  E-value=9.2e-11  Score=70.06  Aligned_cols=100  Identities=18%  Similarity=0.286  Sum_probs=90.3

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      ..|++..|+..|..+++.+|++..+++..|.+|...|+...|+..+.+.+++.|+...+...+|.++++ +|.+++|+..
T Consensus        50 a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK-~Gele~A~~D  128 (504)
T KOG0624|consen   50 ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK-QGELEQAEAD  128 (504)
T ss_pred             HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh-cccHHHHHHH
Confidence            457899999999999999999999999999999999999999999999999999999999999999998 9999999999


Q ss_pred             HHHHHhcCCCc---HHHHHHHHHH
Q psy12719         86 IEKAISIDKSC---MFAYETLGTI  106 (116)
Q Consensus        86 ~~~~~~~~~~~---~~~~~~l~~~  106 (116)
                      |...++.+|++   .+++..++.+
T Consensus       129 F~~vl~~~~s~~~~~eaqskl~~~  152 (504)
T KOG0624|consen  129 FDQVLQHEPSNGLVLEAQSKLALI  152 (504)
T ss_pred             HHHHHhcCCCcchhHHHHHHHHhH
Confidence            99999999965   3344444433

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.29  E-value=2.6e-10  Score=59.17  Aligned_cols=87  Identities=15%  Similarity=-0.002  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHH
Q psy12719         29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS---CMFAYET  102 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~  102 (116)
                      .+++..|.++-..|+.++|+..|++++......   ..++..+|..+.. +|++++|+..+++.+...|+   +..+...
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            567899999999999999999999999976544   5688999999666 99999999999999999898   6778888


Q ss_pred             HHHHHHhhcccccC
Q psy12719        103 LGTIEVQRTFVVLW  116 (116)
Q Consensus       103 l~~~~~~~~~~~~a  116 (116)
                      ++.++...|+.++|
T Consensus        81 ~Al~L~~~gr~~eA   94 (120)
T PF12688_consen   81 LALALYNLGRPKEA   94 (120)
T ss_pred             HHHHHHHCCCHHHH
Confidence            99999999988764

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.29  E-value=9.8e-11  Score=62.97  Aligned_cols=85  Identities=18%  Similarity=0.182  Sum_probs=72.8

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD   80 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (116)
                      +...|++++|...|+.++...|+.   +.+.+.++.++...|++++|+..++. +...+..+.++..+|.++.. .|+++
T Consensus        58 ~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~-~g~~~  135 (145)
T PF09976_consen   58 AYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLA-QGDYD  135 (145)
T ss_pred             HHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHH-CCCHH
Confidence            456799999999999999988665   45788999999999999999999976 44445567788899999888 99999


Q ss_pred             HHHHHHHHHH
Q psy12719         81 EAIKLIEKAI   90 (116)
Q Consensus        81 ~a~~~~~~~~   90 (116)
                      +|+..|++++
T Consensus       136 ~A~~~y~~Al  145 (145)
T PF09976_consen  136 EARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHhC
Confidence            9999999874

>KOG2002|consensus

Probab=99.28  E-value=7e-11  Score=77.62  Aligned_cols=104  Identities=14%  Similarity=0.178  Sum_probs=60.6

Q ss_pred             cchhcHHHHHHHHHHHHhhCCCh-hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcC----CH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNV-VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG----NV   79 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~   79 (116)
                      ..+|+|++|..+|.+++..+|++ .-++.++|+++...|++..|..+|.+.+...|++..+...+|.+|.. .+    ..
T Consensus       318 Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~-~~~~~~~~  396 (1018)
T KOG2002|consen  318 HAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAH-SAKKQEKR  396 (1018)
T ss_pred             HhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHh-hhhhhHHH
Confidence            44566666666666666666555 44555666666666666666666666666666666666666655443 22    34


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719         80 DEAIKLIEKAISIDKSCMFAYETLGTIEVQ  109 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (116)
                      +.|...+.+++...|.+..+|..++.++..
T Consensus       397 d~a~~~l~K~~~~~~~d~~a~l~laql~e~  426 (1018)
T KOG2002|consen  397 DKASNVLGKVLEQTPVDSEAWLELAQLLEQ  426 (1018)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence            555556666666666666666666555544

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.26  E-value=3.4e-10  Score=64.10  Aligned_cols=94  Identities=18%  Similarity=0.234  Sum_probs=75.0

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHh--
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQA--   75 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~--   75 (116)
                      ....|+|.+|+..|++.+...|.+   +.+.+.+|.+++..|+++.|+..+++.++..|++   +.+++.+|.+++..  
T Consensus        15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~   94 (203)
T PF13525_consen   15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIP   94 (203)
T ss_dssp             HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCc
Confidence            356799999999999999999876   5689999999999999999999999999999987   45788899987652  


Q ss_pred             --------cCCHHHHHHHHHHHHhcCCCcH
Q psy12719         76 --------RGNVDEAIKLIEKAISIDKSCM   97 (116)
Q Consensus        76 --------~~~~~~a~~~~~~~~~~~~~~~   97 (116)
                              .+...+|+..++..+...|+++
T Consensus        95 ~~~~~~~D~~~~~~A~~~~~~li~~yP~S~  124 (203)
T PF13525_consen   95 GILRSDRDQTSTRKAIEEFEELIKRYPNSE  124 (203)
T ss_dssp             HHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred             cchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence                    1234689999999999999873

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.24  E-value=6.7e-10  Score=68.51  Aligned_cols=98  Identities=16%  Similarity=0.109  Sum_probs=83.8

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...++..+|.+.+++++..+|+.+..+.++|+++...|++++|+..++..+..+|+++..|..++..|-. +|+..++.
T Consensus       350 ~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~-~g~~~~a~  428 (484)
T COG4783         350 LLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE-LGNRAEAL  428 (484)
T ss_pred             HHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH-hCchHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999766 78777777


Q ss_pred             HHHHHHHhcCCCcHHHHHH
Q psy12719         84 KLIEKAISIDKSCMFAYET  102 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~  102 (116)
                      ....+..........+...
T Consensus       429 ~A~AE~~~~~G~~~~A~~~  447 (484)
T COG4783         429 LARAEGYALAGRLEQAIIF  447 (484)
T ss_pred             HHHHHHHHhCCCHHHHHHH
Confidence            7777766665554443333

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=99.23  E-value=2.3e-11  Score=58.70  Aligned_cols=67  Identities=19%  Similarity=0.395  Sum_probs=56.3

Q ss_pred             CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC----CC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         25 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD----PE---NASLYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      |+...++..+|.++...|++++|+.+|++++.+.    ++   ...++.++|.++.. .|++++|++.+++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence            4557789999999999999999999999998652    22   25678999999877 99999999999999875

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=99.23  E-value=6.2e-10  Score=60.83  Aligned_cols=98  Identities=12%  Similarity=0.134  Sum_probs=73.9

Q ss_pred             cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc----------ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh---
Q psy12719          9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE----------DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA---   75 (116)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~---   75 (116)
                      -|+.|.+.++.....+|.+++.+.+-|..+..+.          .+++|+.-|+.++.++|+...+++.+|.++...   
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence            4788999999999999999998888887776543          356778888999999999999999999997651   


Q ss_pred             -------cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy12719         76 -------RGNVDEAIKLIEKAISIDKSCMFAYETLGTI  106 (116)
Q Consensus        76 -------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  106 (116)
                             ...+++|..+|+++...+|++......|..+
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                   1238899999999999999987655555443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.23  E-value=2.4e-10  Score=67.59  Aligned_cols=112  Identities=21%  Similarity=0.263  Sum_probs=93.5

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC-----HHHHHHHHHHHHHhcCC
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-----ASLYVHRAMLMLQARGN   78 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~   78 (116)
                      |+..|-++.|++.|...++...--..+.-.+..+|....+|++|++.-++..++.++.     +..+..++..+.. ..+
T Consensus       117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~-~~~  195 (389)
T COG2956         117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA-SSD  195 (389)
T ss_pred             HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh-hhh
Confidence            4456778888888888776554445677888888999999999999999888888765     4567788888666 799


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         79 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        79 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .++|...+.++++.+|++..+-..+|.++...|++.+|
T Consensus       196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~A  233 (389)
T COG2956         196 VDRARELLKKALQADKKCVRASIILGRVELAKGDYQKA  233 (389)
T ss_pred             HHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHH
Confidence            99999999999999999999999999999999998764

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.20  E-value=2.9e-10  Score=64.10  Aligned_cols=94  Identities=15%  Similarity=0.162  Sum_probs=88.2

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      .|.+.|-+.-|.-.|.+++.+.|+.+.+++.+|..+...|+++.|.+.|+..++++|....++.++|..++- -|++.-|
T Consensus        74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~LA  152 (297)
T COG4785          74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYKLA  152 (297)
T ss_pred             hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchHhh
Confidence            456678888899999999999999999999999999999999999999999999999999999999999888 8999999


Q ss_pred             HHHHHHHHhcCCCcH
Q psy12719         83 IKLIEKAISIDKSCM   97 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~   97 (116)
                      .+.+.+..+.+|++|
T Consensus       153 q~d~~~fYQ~D~~DP  167 (297)
T COG4785         153 QDDLLAFYQDDPNDP  167 (297)
T ss_pred             HHHHHHHHhcCCCCh
Confidence            999999999999986

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.19  E-value=1.4e-09  Score=69.13  Aligned_cols=89  Identities=15%  Similarity=0.106  Sum_probs=77.8

Q ss_pred             hcHHHHHHHHHHHHhh--CCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719          8 ERVEQSLKEFRNFVDT--HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      .+...+.+...+++..  +|.++.++..+|......|++++|...+++++.++| +..+|..+|.++.. .|++++|++.
T Consensus       398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~-~G~~~eA~~~  475 (517)
T PRK10153        398 KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL-KGDNRLAADA  475 (517)
T ss_pred             HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-cCCHHHHHHH
Confidence            3456677777776664  677788899999999999999999999999999999 58899999999887 8999999999


Q ss_pred             HHHHHhcCCCcHH
Q psy12719         86 IEKAISIDKSCMF   98 (116)
Q Consensus        86 ~~~~~~~~~~~~~   98 (116)
                      +.+++.++|.++.
T Consensus       476 ~~~A~~L~P~~pt  488 (517)
T PRK10153        476 YSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHhcCCCCch
Confidence            9999999999874

>KOG1127|consensus

Probab=99.15  E-value=6e-10  Score=73.84  Aligned_cols=105  Identities=11%  Similarity=0.081  Sum_probs=87.7

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      .|.+.+++..|+..|+.+++.+|.+...|..+|.+|...|++..|.++|.++..++|.+....+..+.+... .|.|.++
T Consensus       571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd-~GkYkea  649 (1238)
T KOG1127|consen  571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD-NGKYKEA  649 (1238)
T ss_pred             cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH-hhhHHHH
Confidence            356778889999999999999999999999999999999999999999999999999999888888888776 8999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTIEV  108 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~  108 (116)
                      +..+...+........+...++.++.
T Consensus       650 ld~l~~ii~~~s~e~~~q~gLaE~~i  675 (1238)
T KOG1127|consen  650 LDALGLIIYAFSLERTGQNGLAESVI  675 (1238)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            99998888776655545555555443

>KOG1128|consensus

Probab=99.15  E-value=1.5e-10  Score=74.22  Aligned_cols=111  Identities=14%  Similarity=0.159  Sum_probs=89.5

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHH----------------------------HHHHhhcChhhHHHHHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA----------------------------QVLVDQEDFDGAEEYFNRS   54 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~A~~~~~~a   54 (116)
                      +|...|+..+|..+..+-++ .|.++..|..+|                            .....+++|.++...++..
T Consensus       433 CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~s  511 (777)
T KOG1128|consen  433 CYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERS  511 (777)
T ss_pred             HHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHH
Confidence            34555666677777666666 333344333333                            3334468999999999999


Q ss_pred             hccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         55 IRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      +.++|-....|+.+|.+.++ .+++..|.+.|.+++...|++.++|.+++..|...|+-.+
T Consensus       512 l~~nplq~~~wf~~G~~ALq-lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~r  571 (777)
T KOG1128|consen  512 LEINPLQLGTWFGLGCAALQ-LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKR  571 (777)
T ss_pred             hhcCccchhHHHhccHHHHH-HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHH
Confidence            99999999999999999998 9999999999999999999999999999999999887654

>KOG4642|consensus

Probab=99.14  E-value=5.2e-10  Score=63.67  Aligned_cols=87  Identities=21%  Similarity=0.258  Sum_probs=81.5

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      .....|..|+..|.+++..+|..+..+.+.+.++++.++++.+....+++++++|+...+++.+|...+. ...++.|+.
T Consensus        21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~-s~~~~eaI~   99 (284)
T KOG4642|consen   21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-SKGYDEAIK   99 (284)
T ss_pred             cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-hccccHHHH
Confidence            3456799999999999999999999999999999999999999999999999999999999999999888 899999999


Q ss_pred             HHHHHHhc
Q psy12719         85 LIEKAISI   92 (116)
Q Consensus        85 ~~~~~~~~   92 (116)
                      .++++.++
T Consensus       100 ~Lqra~sl  107 (284)
T KOG4642|consen  100 VLQRAYSL  107 (284)
T ss_pred             HHHHHHHH
Confidence            99999665

>KOG4555|consensus

Probab=99.14  E-value=5.1e-09  Score=54.71  Aligned_cols=91  Identities=21%  Similarity=0.218  Sum_probs=78.3

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC----HHHHHHHHHHHHHhcCCHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----ASLYVHRAMLMLQARGNVD   80 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~   80 (116)
                      ...|+.+.|++.|.+++.+.|..+.++.+.+..+.-+|+.++|...+++++++....    ..++...|.+|-. .|+.+
T Consensus        54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl-~g~dd  132 (175)
T KOG4555|consen   54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL-LGNDD  132 (175)
T ss_pred             HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-hCchH
Confidence            456889999999999999999999999999999999999999999999999876443    4568889998655 89999


Q ss_pred             HHHHHHHHHHhcCCCc
Q psy12719         81 EAIKLIEKAISIDKSC   96 (116)
Q Consensus        81 ~a~~~~~~~~~~~~~~   96 (116)
                      .|...|+.+-++....
T Consensus       133 ~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  133 AARADFEAAAQLGSKF  148 (175)
T ss_pred             HHHHhHHHHHHhCCHH
Confidence            9999999888775544

>KOG0543|consensus

Probab=99.14  E-value=7.4e-10  Score=67.05  Aligned_cols=93  Identities=14%  Similarity=0.189  Sum_probs=81.4

Q ss_pred             ccccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12719          2 IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE   81 (116)
Q Consensus         2 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (116)
                      +++.++++|..|+....+++..+|++..++++.|.++...++++.|+..|+++++..|.|-.+...+..+.-+......+
T Consensus       265 ~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k  344 (397)
T KOG0543|consen  265 ACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK  344 (397)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999888886554444555


Q ss_pred             HHHHHHHHHhcCC
Q psy12719         82 AIKLIEKAISIDK   94 (116)
Q Consensus        82 a~~~~~~~~~~~~   94 (116)
                      ..+.|.+.+...+
T Consensus       345 ekk~y~~mF~k~~  357 (397)
T KOG0543|consen  345 EKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHhhccc
Confidence            6788888877643

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.14  E-value=1.3e-09  Score=63.05  Aligned_cols=85  Identities=16%  Similarity=0.092  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHH
Q psy12719         31 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYETLG  104 (116)
Q Consensus        31 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~  104 (116)
                      .+..+.-+...|+|..|...|..-++..|++   +.++|.||.+++. +|+++.|...|..+++-.|++   |++++.+|
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            6788888999999999999999999999987   6789999999998 999999999999999987765   78999999


Q ss_pred             HHHHhhcccccC
Q psy12719        105 TIEVQRTFVVLW  116 (116)
Q Consensus       105 ~~~~~~~~~~~a  116 (116)
                      .+...+|+.++|
T Consensus       223 ~~~~~l~~~d~A  234 (262)
T COG1729         223 VSLGRLGNTDEA  234 (262)
T ss_pred             HHHHHhcCHHHH
Confidence            999999988764

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=99.10  E-value=3.5e-10  Score=48.64  Aligned_cols=41  Identities=22%  Similarity=0.308  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHH
Q psy12719         29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA   69 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   69 (116)
                      .++..+|..+...|++++|+..|+++++.+|+++.+|..+|
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            34555555555566666666666666666665555555554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.10  E-value=4.9e-09  Score=66.56  Aligned_cols=111  Identities=16%  Similarity=0.130  Sum_probs=88.1

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      |...|++++|+++++++|...|..++.++..|.++...|++.+|..+.+.+..+++.+--+-...+..+++ .|+.++|.
T Consensus       204 yd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR-a~~~e~A~  282 (517)
T PF12569_consen  204 YDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR-AGRIEEAE  282 (517)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH-CCCHHHHH
Confidence            45678899999999999999999999999999999999999999999999999998888777777777777 89999999


Q ss_pred             HHHHHHHhcC--CCc-----HHHHH--HHHHHHHhhccccc
Q psy12719         84 KLIEKAISID--KSC-----MFAYE--TLGTIEVQRTFVVL  115 (116)
Q Consensus        84 ~~~~~~~~~~--~~~-----~~~~~--~l~~~~~~~~~~~~  115 (116)
                      +.+......+  |..     ...|+  ..|.++...|++..
T Consensus       283 ~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~  323 (517)
T PF12569_consen  283 KTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL  323 (517)
T ss_pred             HHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            8887776554  211     22343  56667777776543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1174|consensus

Probab=99.09  E-value=1.7e-09  Score=66.07  Aligned_cols=112  Identities=17%  Similarity=0.152  Sum_probs=76.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHH----------------------------------HHHHHHHHHhhcChhhHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEA----------------------------------CTLFAQVLVDQEDFDGAEE   49 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~A~~   49 (116)
                      +...|++.+|+..|+++.-.+|.....                                  |+--+...+..+++..|..
T Consensus       242 ~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~  321 (564)
T KOG1174|consen  242 LYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALN  321 (564)
T ss_pred             hhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHH
Confidence            345677777777777777777654321                                  2233334445566777777


Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         50 YFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        50 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +-.++|+.+|++..++...|..+.. .++..+|+-.|+.+..+.|...+.|..|-.+|...|++.+|
T Consensus       322 ~~eK~I~~~~r~~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA  387 (564)
T KOG1174|consen  322 FVEKCIDSEPRNHEALILKGRLLIA-LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA  387 (564)
T ss_pred             HHHHHhccCcccchHHHhccHHHHh-ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence            7777777777777777777777666 77777777777777777777777777777777777776653

>KOG4648|consensus

Probab=99.09  E-value=3.3e-10  Score=67.83  Aligned_cols=85  Identities=20%  Similarity=0.194  Sum_probs=77.2

Q ss_pred             HHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhh
Q psy12719         31 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR  110 (116)
Q Consensus        31 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  110 (116)
                      ....|+.|+++|.|++|+.+|.+++..+|.++..+.+++.+|++ .+.+..|...+..++.++.....+|...+.+...+
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L  178 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL  178 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999998 89999999999999999998888888888887777


Q ss_pred             cccccC
Q psy12719        111 TFVVLW  116 (116)
Q Consensus       111 ~~~~~a  116 (116)
                      |...+|
T Consensus       179 g~~~EA  184 (536)
T KOG4648|consen  179 GNNMEA  184 (536)
T ss_pred             hhHHHH
Confidence            766553

>KOG1127|consensus

Probab=99.08  E-value=5.7e-10  Score=73.95  Aligned_cols=108  Identities=16%  Similarity=0.211  Sum_probs=82.9

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHH------------------------------------HHHHHHHHHhhcChhhHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEA------------------------------------CTLFAQVLVDQEDFDGAEEY   50 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~A~~~   50 (116)
                      .-+...|..+|.++.+++|.+..+                                    |..+|..|...++...|+..
T Consensus       505 ~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~  584 (1238)
T KOG1127|consen  505 SDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCE  584 (1238)
T ss_pred             HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHH
Confidence            345667777777777777665443                                    33455555566677777888


Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         51 FNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        51 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      |+.+++.+|.+...|..+|.+|.. .|++.-|.+.|.++..++|.+..+.+..+.+....|.+.+
T Consensus       585 fQsALR~dPkD~n~W~gLGeAY~~-sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke  648 (1238)
T KOG1127|consen  585 FQSALRTDPKDYNLWLGLGEAYPE-SGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE  648 (1238)
T ss_pred             HHHHhcCCchhHHHHHHHHHHHHh-cCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence            888888888888888888888777 7888888888888888888888888888888888887765

>KOG2003|consensus

Probab=99.08  E-value=3e-09  Score=66.03  Aligned_cols=111  Identities=18%  Similarity=0.099  Sum_probs=73.0

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCC-----
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN-----   78 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----   78 (116)
                      +..+|+.++|+++|-+.-.+-.++..++..++.+|....+...|++++.++..+-|+++.++..+|.+|-+ .|+     
T Consensus       534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydq-egdksqaf  612 (840)
T KOG2003|consen  534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ-EGDKSQAF  612 (840)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc-ccchhhhh
Confidence            44567777777777776666666777777777777777777777777777777777777777666666443 444     


Q ss_pred             -----------------------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         79 -----------------------------VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        79 -----------------------------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                                                   .++++.+|+++--+.|+.......++.|+...|++.+
T Consensus       613 q~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk  678 (840)
T KOG2003|consen  613 QCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK  678 (840)
T ss_pred             hhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence                                         4555555555555556555555556666666666554

>KOG0376|consensus

Probab=99.07  E-value=4.7e-10  Score=69.11  Aligned_cols=103  Identities=17%  Similarity=0.178  Sum_probs=95.4

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      ...+.|+.|+..|.++++++|+++..+-..+..+.+.+++..|+..+.++++.+|....+|+..|.+... .+.+.+|..
T Consensus        15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~-l~~~~~A~~   93 (476)
T KOG0376|consen   15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA-LGEFKKALL   93 (476)
T ss_pred             cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh-HHHHHHHHH
Confidence            3457899999999999999999999999999999999999999999999999999999999999999777 899999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEV  108 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~  108 (116)
                      .|+....+.|+++.+...+..|-.
T Consensus        94 ~l~~~~~l~Pnd~~~~r~~~Ec~~  117 (476)
T KOG0376|consen   94 DLEKVKKLAPNDPDATRKIDECNK  117 (476)
T ss_pred             HHHHhhhcCcCcHHHHHHHHHHHH
Confidence            999999999999988887777654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.07  E-value=8.4e-09  Score=58.47  Aligned_cols=84  Identities=23%  Similarity=0.252  Sum_probs=69.2

Q ss_pred             hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHH
Q psy12719         27 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAY  100 (116)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~  100 (116)
                      ++..++..|...+..|++.+|+..|++++...|.+   +.+.+.+|.+++. .|+++.|+..+++.+...|++   +.++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            35678899999999999999999999999998876   6689999999998 899999999999999999876   5678


Q ss_pred             HHHHHHHHhhc
Q psy12719        101 ETLGTIEVQRT  111 (116)
Q Consensus       101 ~~l~~~~~~~~  111 (116)
                      +.+|.++..+.
T Consensus        83 Y~~g~~~~~~~   93 (203)
T PF13525_consen   83 YMLGLSYYKQI   93 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            88888876543

>KOG0495|consensus

Probab=99.06  E-value=4e-09  Score=67.72  Aligned_cols=83  Identities=11%  Similarity=0.068  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719         29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV  108 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  108 (116)
                      ++|+-.+.+...+++.++|+..++.+++..|.....|..+|.++.+ .++.+.|.+.|...+...|..+..|..++.+..
T Consensus       652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~-~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE  730 (913)
T KOG0495|consen  652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ-MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE  730 (913)
T ss_pred             hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH-HHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence            3344444444445555555555555555555555555555555444 555555555555555555555555555555554


Q ss_pred             hhcc
Q psy12719        109 QRTF  112 (116)
Q Consensus       109 ~~~~  112 (116)
                      ..|+
T Consensus       731 k~~~  734 (913)
T KOG0495|consen  731 KDGQ  734 (913)
T ss_pred             Hhcc
Confidence            4443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.05  E-value=3.6e-09  Score=65.05  Aligned_cols=84  Identities=13%  Similarity=0.219  Sum_probs=77.6

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      ..++-.+|++.+.+++...|.+...+...+..+...++++.|+.+.+++....|.+...|+.++.+|.. .|+++.|+-.
T Consensus       212 ~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~-~~d~e~ALla  290 (395)
T PF09295_consen  212 LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ-LGDFENALLA  290 (395)
T ss_pred             hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-cCCHHHHHHH
Confidence            345678999999999999999999999999999999999999999999999999999999999999888 9999999987


Q ss_pred             HHHHH
Q psy12719         86 IEKAI   90 (116)
Q Consensus        86 ~~~~~   90 (116)
                      +..+-
T Consensus       291 LNs~P  295 (395)
T PF09295_consen  291 LNSCP  295 (395)
T ss_pred             HhcCc
Confidence            76443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.05  E-value=1.3e-08  Score=59.17  Aligned_cols=83  Identities=10%  Similarity=0.021  Sum_probs=72.2

Q ss_pred             hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHH
Q psy12719         27 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL---YVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAY  100 (116)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~  100 (116)
                      ++..++..|......|++++|+..|++++...|.++.+   .+.+|.++++ .+++++|+..+++.++..|++   +.++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            45667889999999999999999999999999998655   4899999998 899999999999999998876   5678


Q ss_pred             HHHHHHHHhh
Q psy12719        101 ETLGTIEVQR  110 (116)
Q Consensus       101 ~~l~~~~~~~  110 (116)
                      +.+|.++...
T Consensus       110 Y~~g~~~~~~  119 (243)
T PRK10866        110 YMRGLTNMAL  119 (243)
T ss_pred             HHHHHhhhhc
Confidence            8888775444

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.04  E-value=2.8e-08  Score=52.73  Aligned_cols=84  Identities=15%  Similarity=0.141  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHH
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYE  101 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~  101 (116)
                      +..++.-|...+..|+|.+|++.|+.+....|..   ..+.+.++.+++. .+++++|+..+++.++++|.+   +-+++
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            5578889999999999999999999999988866   5689999999999 899999999999999999987   45788


Q ss_pred             HHHHHHHhhcc
Q psy12719        102 TLGTIEVQRTF  112 (116)
Q Consensus       102 ~l~~~~~~~~~  112 (116)
                      ..|.++..+..
T Consensus        89 ~~gL~~~~~~~   99 (142)
T PF13512_consen   89 MRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHhh
Confidence            88888777653

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=99.03  E-value=1.5e-09  Score=46.68  Aligned_cols=43  Identities=23%  Similarity=0.325  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy12719         62 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGT  105 (116)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~  105 (116)
                      +.+++.+|..+.. .|++++|++.++++++.+|+++.+|..++.
T Consensus         1 p~~~~~la~~~~~-~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRR-LGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            3578899999887 999999999999999999999999999875

>KOG4642|consensus

Probab=99.02  E-value=1e-09  Score=62.52  Aligned_cols=84  Identities=20%  Similarity=0.185  Sum_probs=77.5

Q ss_pred             HHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q psy12719         32 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRT  111 (116)
Q Consensus        32 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  111 (116)
                      ..-|+.++....|+.|+.+|.++|.++|..+..+.+.+.++++ .++++...+...+++++.|+....++.+|.+.....
T Consensus        14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~   92 (284)
T KOG4642|consen   14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK   92 (284)
T ss_pred             HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence            4457778888999999999999999999999999999999999 999999999999999999999999999999998888


Q ss_pred             ccccC
Q psy12719        112 FVVLW  116 (116)
Q Consensus       112 ~~~~a  116 (116)
                      .+++|
T Consensus        93 ~~~ea   97 (284)
T KOG4642|consen   93 GYDEA   97 (284)
T ss_pred             cccHH
Confidence            77654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=99.01  E-value=3.2e-08  Score=54.82  Aligned_cols=109  Identities=13%  Similarity=0.105  Sum_probs=89.3

Q ss_pred             cchhcHHHHHHHHHHHHh-hCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCC--CCHHHHHHHHHHHHHhcCCHHH
Q psy12719          5 GDRERVEQSLKEFRNFVD-THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP--ENASLYVHRAMLMLQARGNVDE   81 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~   81 (116)
                      .+.|++.+|...|++++. ...+++.....+++..+..+++..|...+++..+.+|  .++.....+|..+.. .|.+.+
T Consensus       100 ~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-~g~~a~  178 (251)
T COG4700         100 AELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA-QGKYAD  178 (251)
T ss_pred             HHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh-cCCchh
Confidence            357889999999999875 3466788888999999999999999999999998887  457778888888666 899999


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         82 AIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      |...|+.+++.-|+. .+....+..+..+|+.++
T Consensus       179 Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~e  211 (251)
T COG4700         179 AESAFEVAISYYPGP-QARIYYAEMLAKQGRLRE  211 (251)
T ss_pred             HHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhH
Confidence            999999999988874 356667777777776554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=99.00  E-value=2.1e-09  Score=66.34  Aligned_cols=59  Identities=19%  Similarity=0.161  Sum_probs=54.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHhhcccccC
Q psy12719         57 VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF---AYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a  116 (116)
                      .+|+++.+++++|..++. .|++++|+..++++++++|++..   +|+++|.+|..+|++++|
T Consensus        70 ~dP~~a~a~~NLG~AL~~-lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEA  131 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFS-KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKA  131 (453)
T ss_pred             CCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHH
Confidence            468889999999999888 89999999999999999999985   499999999999998875

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.98  E-value=5.9e-09  Score=61.99  Aligned_cols=91  Identities=13%  Similarity=0.238  Sum_probs=76.7

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCH-HHHHHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV-DEAIKLI   86 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~   86 (116)
                      ..+.+|...|++.....|.++..+.+++.++..+|++++|...+.+++..+|.++.++.+++.+... .|+. +.+.+.+
T Consensus       181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~-~gk~~~~~~~~l  259 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH-LGKPTEAAERYL  259 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH-TT-TCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-hCCChhHHHHHH
Confidence            4688999999998888888899999999999999999999999999999999999999999998776 7887 6677888


Q ss_pred             HHHHhcCCCcHHH
Q psy12719         87 EKAISIDKSCMFA   99 (116)
Q Consensus        87 ~~~~~~~~~~~~~   99 (116)
                      .+....+|+.+.+
T Consensus       260 ~qL~~~~p~h~~~  272 (290)
T PF04733_consen  260 SQLKQSNPNHPLV  272 (290)
T ss_dssp             HHCHHHTTTSHHH
T ss_pred             HHHHHhCCCChHH
Confidence            8888889987644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1174|consensus

Probab=98.97  E-value=1.4e-08  Score=62.27  Aligned_cols=99  Identities=19%  Similarity=0.196  Sum_probs=82.2

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      +..+++..|+.+-+++|..+|.+..++...|.++...++.++|+-.|+.++.+.|.....|-.+..+|+. .|++.+|.-
T Consensus       311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA-~~~~kEA~~  389 (564)
T KOG1174|consen  311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA-QKRFKEANA  389 (564)
T ss_pred             hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh-hchHHHHHH
Confidence            4668899999999999999999999999999999999999999999999999999998888888888777 677666666


Q ss_pred             HHHHHHhcCCCcHHHHHHHH
Q psy12719         85 LIEKAISIDKSCMFAYETLG  104 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~  104 (116)
                      ....++...|.+...+..+|
T Consensus       390 ~An~~~~~~~~sA~~LtL~g  409 (564)
T KOG1174|consen  390 LANWTIRLFQNSARSLTLFG  409 (564)
T ss_pred             HHHHHHHHhhcchhhhhhhc
Confidence            66666666555555444443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.97  E-value=1.7e-08  Score=64.17  Aligned_cols=86  Identities=19%  Similarity=0.273  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719         30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ  109 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (116)
                      +++.++..|...|++++|+++++++|...|..+..++..|.++-. .|++.+|.+.++.+..+++.+..+-...+..+.+
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AGDLKEAAEAMDEARELDLADRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence            557889999999999999999999999999999999999999655 9999999999999999999998777788888888


Q ss_pred             hcccccC
Q psy12719        110 RTFVVLW  116 (116)
Q Consensus       110 ~~~~~~a  116 (116)
                      .|+.++|
T Consensus       275 a~~~e~A  281 (517)
T PF12569_consen  275 AGRIEEA  281 (517)
T ss_pred             CCCHHHH
Confidence            8877654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4555|consensus

Probab=98.96  E-value=3.7e-08  Score=51.57  Aligned_cols=86  Identities=27%  Similarity=0.297  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHH
Q psy12719         30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC----MFAYETLGT  105 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~  105 (116)
                      .+-..|......|+.+.|++.|.+++.+.|..+.+|.+.+..+-- +|+.++|...+.+++++....    -.++...|.
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~  123 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAGDQTRTACQAFVQRGL  123 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            445668888899999999999999999999999999999999555 899999999999999986543    245778899


Q ss_pred             HHHhhcccccC
Q psy12719        106 IEVQRTFVVLW  116 (116)
Q Consensus       106 ~~~~~~~~~~a  116 (116)
                      +|..+|+-+.|
T Consensus       124 lyRl~g~dd~A  134 (175)
T KOG4555|consen  124 LYRLLGNDDAA  134 (175)
T ss_pred             HHHHhCchHHH
Confidence            99998887653

>KOG0624|consensus

Probab=98.95  E-value=3.5e-08  Score=59.42  Aligned_cols=95  Identities=8%  Similarity=0.170  Sum_probs=89.0

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|+...+++.....++..|=++..+...+.+|...|+...|+..++.+-++..++...++.++.+++. .|+.+.++
T Consensus       165 ~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~-vgd~~~sL  243 (504)
T KOG0624|consen  165 ASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT-VGDAENSL  243 (504)
T ss_pred             HhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh-hhhHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999999999998 89999999


Q ss_pred             HHHHHHHhcCCCcHHH
Q psy12719         84 KLIEKAISIDKSCMFA   99 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~   99 (116)
                      ...+++++++|+...+
T Consensus       244 ~~iRECLKldpdHK~C  259 (504)
T KOG0624|consen  244 KEIRECLKLDPDHKLC  259 (504)
T ss_pred             HHHHHHHccCcchhhH
Confidence            9999999999987443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.93  E-value=1.3e-09  Score=44.14  Aligned_cols=31  Identities=23%  Similarity=0.474  Sum_probs=15.6

Q ss_pred             HHHHHhhCCChhHHHHHHHHHHHhhcChhhH
Q psy12719         17 FRNFVDTHSNVVEACTLFAQVLVDQEDFDGA   47 (116)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A   47 (116)
                      |+++++.+|+++.+|.++|.++...|++++|
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence            3444555555555555555555555555444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.90  E-value=2.1e-09  Score=43.51  Aligned_cols=32  Identities=38%  Similarity=0.698  Sum_probs=24.8

Q ss_pred             HHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719         51 FNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus        51 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      |+++|+++|+++.+|+++|.++.. .|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLN-QGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhc
Confidence            677788888888888888888766 78887775

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.90  E-value=3.9e-08  Score=65.75  Aligned_cols=104  Identities=17%  Similarity=0.151  Sum_probs=84.1

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC--------------------CCCH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--------------------PENA   62 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------------~~~~   62 (116)
                      +|.++|++++|...|+++++.+|+++.+..++|..+... +.++|+.++.+++...                    |++.
T Consensus       125 ~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~  203 (906)
T PRK14720        125 AYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDF  203 (906)
T ss_pred             HHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccc
Confidence            566789999999999999999999999999999999988 9999999998886542                    3332


Q ss_pred             HH--------HHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719         63 SL--------YVHRA------------MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV  108 (116)
Q Consensus        63 ~~--------~~~~~------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  108 (116)
                      ..        ...++            .+| ...+++++++..++.+++.+|++..+...++.+|.
T Consensus       204 d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y-~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        204 DFFLRIERKVLGHREFTRLVGLLEDLYEPY-KALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             hHHHHHHHHHHhhhccchhHHHHHHHHHHH-hhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            22        11122            443 33788999999999999999999888999999887

>KOG4234|consensus

Probab=98.86  E-value=3.6e-08  Score=55.23  Aligned_cols=87  Identities=17%  Similarity=0.184  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q psy12719         29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA-----SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETL  103 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  103 (116)
                      +-+..-|+-++..|+|.+|..-|..++...|..+     ..+.+.|.+..+ ++..+.|+....++++++|....++...
T Consensus        96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK-l~k~e~aI~dcsKaiel~pty~kAl~RR  174 (271)
T KOG4234|consen   96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK-LRKWESAIEDCSKAIELNPTYEKALERR  174 (271)
T ss_pred             HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH-hhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence            3455678889999999999999999999998763     367889999888 8999999999999999999999999999


Q ss_pred             HHHHHhhcccccC
Q psy12719        104 GTIEVQRTFVVLW  116 (116)
Q Consensus       104 ~~~~~~~~~~~~a  116 (116)
                      +.+|..+..+++|
T Consensus       175 Aeayek~ek~eea  187 (271)
T KOG4234|consen  175 AEAYEKMEKYEEA  187 (271)
T ss_pred             HHHHHhhhhHHHH
Confidence            9999998877754

>KOG0545|consensus

Probab=98.85  E-value=9.9e-08  Score=55.00  Aligned_cols=92  Identities=21%  Similarity=0.222  Sum_probs=79.8

Q ss_pred             cchhcHHHHHHHHHHHHh--------hCCChhH----------HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVD--------THSNVVE----------ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV   66 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~--------~~~~~~~----------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   66 (116)
                      ...|+|.+|...|..++.        ..|.++.          .+.+++.++...|+|-++++.....+..+|.+..+++
T Consensus       189 fk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~f  268 (329)
T KOG0545|consen  189 FKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYF  268 (329)
T ss_pred             hhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            457888888888887763        3365543          5788999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12719         67 HRAMLMLQARGNVDEAIKLIEKAISIDKSCM   97 (116)
Q Consensus        67 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~   97 (116)
                      .+|.++.. .-+..+|...+..+++++|.-.
T Consensus       269 rRakAhaa-~Wn~~eA~~D~~~vL~ldpsla  298 (329)
T KOG0545|consen  269 RRAKAHAA-VWNEAEAKADLQKVLELDPSLA  298 (329)
T ss_pred             HHHHHHHh-hcCHHHHHHHHHHHHhcChhhH
Confidence            99999877 7999999999999999999764

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.85  E-value=4.7e-08  Score=64.52  Aligned_cols=109  Identities=13%  Similarity=0.060  Sum_probs=77.0

Q ss_pred             cchhcHHHHHHHHHHHHhhCCC--hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      ...|..++|.++|+.+.+..+-  +...+..+...+.+.|++++|.+.+++.- ..| +...|..+...+.. .|+.+.|
T Consensus       437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~-~g~~~~a  513 (697)
T PLN03081        437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRI-HKNLELG  513 (697)
T ss_pred             hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHH-cCCcHHH
Confidence            3456666666666666543221  23356667777777777777777776532 223 34557777666555 7999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ...+++.+...|++...+..+..+|...|++++|
T Consensus       514 ~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A  547 (697)
T PLN03081        514 RLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA  547 (697)
T ss_pred             HHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence            9999999999998888899999999999988764

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.83  E-value=4.6e-09  Score=50.60  Aligned_cols=55  Identities=15%  Similarity=0.357  Sum_probs=45.8

Q ss_pred             cccchhcHHHHHHHHHHHHhhC---C-C---hhHHHHHHHHHHHhhcChhhHHHHHHHHhcc
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTH---S-N---VVEACTLFAQVLVDQEDFDGAEEYFNRSIRV   57 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~---~-~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~   57 (116)
                      ++..+|++++|+++|++++...   + +   ...++.++|.++...|++++|++++++++++
T Consensus        14 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen   14 VYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4567899999999999999663   2 2   2557899999999999999999999999875

...

>PLN03077 Protein ECB2; Provisional

Probab=98.82  E-value=1.5e-07  Score=63.52  Aligned_cols=110  Identities=12%  Similarity=0.074  Sum_probs=82.6

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCC--hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE   81 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (116)
                      +...|..++|.++|+.+.+..+-  +...+..+...+.+.|++++|.+.+++. ...|+ ..+|..+-..+.. .++.+.
T Consensus       599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~-~~~~e~  675 (857)
T PLN03077        599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRI-HRHVEL  675 (857)
T ss_pred             HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHH-cCChHH
Confidence            34567788888888887744322  2456777888888888888888888775 24444 4556655555444 788888


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         82 AIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +....++++++.|++...+..++.+|...|++++|
T Consensus       676 ~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a  710 (857)
T PLN03077        676 GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEV  710 (857)
T ss_pred             HHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHH
Confidence            88888999999999999999999999999998864

>KOG4340|consensus

Probab=98.82  E-value=2.1e-07  Score=55.25  Aligned_cols=54  Identities=11%  Similarity=0.083  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         62 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +....+.|.+.++ .|+++.|++-|+.+++...-.+-+-++++.++.+.|+++.|
T Consensus       144 Ad~~in~gCllyk-egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasA  197 (459)
T KOG4340|consen  144 ADGQINLGCLLYK-EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASA  197 (459)
T ss_pred             cchhccchheeec-cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHH
Confidence            3345556666565 78899999999999998888888888999998888887653

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.81  E-value=1e-08  Score=41.47  Aligned_cols=31  Identities=26%  Similarity=0.573  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHhhcChhhHHHHHHHHhccCCC
Q psy12719         30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE   60 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~   60 (116)
                      +|+.+|.++..+|++++|+..|+++++++|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            4445555555555555555555555555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.80  E-value=1.8e-08  Score=40.65  Aligned_cols=32  Identities=28%  Similarity=0.584  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHhccCCC
Q psy12719         29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE   60 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~   60 (116)
                      .++..+|.++...|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34555666666666666666666666665554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.79  E-value=1.9e-07  Score=55.46  Aligned_cols=108  Identities=16%  Similarity=0.199  Sum_probs=85.4

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHh-hcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD-QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      +.+..+.|...|.++.+..+.+..+|...|.+-+. .++.+.|...|+.+++..|.+...|......+.. .++.+.+..
T Consensus        13 r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~d~~~aR~   91 (280)
T PF05843_consen   13 RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LNDINNARA   91 (280)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hCcHHHHHH
Confidence            44568899999999987666778899999999666 6777779999999999999999999999888777 899999999


Q ss_pred             HHHHHHhcCCCcH---HHHHHHHHHHHhhcccc
Q psy12719         85 LIEKAISIDKSCM---FAYETLGTIEVQRTFVV  114 (116)
Q Consensus        85 ~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~  114 (116)
                      .|++++..-|...   .+|..........|+.+
T Consensus        92 lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~  124 (280)
T PF05843_consen   92 LFERAISSLPKEKQSKKIWKKFIEFESKYGDLE  124 (280)
T ss_dssp             HHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HH
T ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHH
Confidence            9999998877654   57777777777777653

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.79  E-value=2.5e-07  Score=56.26  Aligned_cols=106  Identities=14%  Similarity=0.094  Sum_probs=74.4

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      .+.|+.++|.++.+.+++..-+.. ....++  ...-++...=++..++.++..|+++..++.+|..+++ .+.+.+|.+
T Consensus       274 i~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k-~~~w~kA~~  349 (400)
T COG3071         274 IRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK-NKLWGKASE  349 (400)
T ss_pred             HHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH-hhHHHHHHH
Confidence            355777788888777777654432 222222  2356677777777777788888888888888888777 788888888


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      .++.+++..|+.. .+..+|.++.++|+..+
T Consensus       350 ~leaAl~~~~s~~-~~~~la~~~~~~g~~~~  379 (400)
T COG3071         350 ALEAALKLRPSAS-DYAELADALDQLGEPEE  379 (400)
T ss_pred             HHHHHHhcCCChh-hHHHHHHHHHHcCChHH
Confidence            8888887777643 46777888777777654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.78  E-value=9.8e-08  Score=56.75  Aligned_cols=107  Identities=14%  Similarity=0.193  Sum_probs=76.4

Q ss_pred             hhcHHHHHHHHHHHHhhCCC------hhHHHHHHHHHHHhh-cChhhHHHHHHHHhccCCCC------HHHHHHHHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSN------VVEACTLFAQVLVDQ-EDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLML   73 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~~   73 (116)
                      ..++++|++++++++...-.      -..++..+|.++... |++++|+++|++++......      ..++..+|.++.
T Consensus        87 ~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~  166 (282)
T PF14938_consen   87 KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA  166 (282)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred             hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence            34788999999999876421      145788899999988 99999999999998764322      346778888877


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHHhhcccc
Q psy12719         74 QARGNVDEAIKLIEKAISIDKSC-------MFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        74 ~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~  114 (116)
                      . .|+|++|++.|++......+.       ...+...+.++...||+.
T Consensus       167 ~-l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v  213 (282)
T PF14938_consen  167 R-LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYV  213 (282)
T ss_dssp             H-TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HH
T ss_pred             H-hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHH
Confidence            7 899999999999998753321       234456666777777653

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.78  E-value=4.4e-07  Score=62.35  Aligned_cols=15  Identities=13%  Similarity=-0.035  Sum_probs=6.2

Q ss_pred             HHHHHHHHHhhcccc
Q psy12719        100 YETLGTIEVQRTFVV  114 (116)
Q Consensus       100 ~~~l~~~~~~~~~~~  114 (116)
                      |..+...+.+.|+++
T Consensus       722 yN~LI~gy~k~G~~e  736 (1060)
T PLN03218        722 MNALITALCEGNQLP  736 (1060)
T ss_pred             HHHHHHHHHHCCCHH
Confidence            444444444444433

>KOG1915|consensus

Probab=98.76  E-value=4.2e-07  Score=56.97  Aligned_cols=105  Identities=12%  Similarity=0.239  Sum_probs=91.3

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      .+++++..|...|++++..+..+...|..++.+-++.+....|..++++++.+-|.....|+....+--. +|+...|.+
T Consensus        84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~-LgNi~gaRq  162 (677)
T KOG1915|consen   84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM-LGNIAGARQ  162 (677)
T ss_pred             HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH-hcccHHHHH
Confidence            3578899999999999999999999999999999999999999999999999999999999999988555 899999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhhc
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQRT  111 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~  111 (116)
                      .|++.++..|+.. +|..........+
T Consensus       163 iferW~~w~P~eq-aW~sfI~fElRyk  188 (677)
T KOG1915|consen  163 IFERWMEWEPDEQ-AWLSFIKFELRYK  188 (677)
T ss_pred             HHHHHHcCCCcHH-HHHHHHHHHHHhh
Confidence            9999999999853 5555555444433

>KOG3081|consensus

Probab=98.76  E-value=6.3e-07  Score=52.18  Aligned_cols=105  Identities=22%  Similarity=0.207  Sum_probs=78.7

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHH----hhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLV----DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE   81 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (116)
                      ++.+++-|...++++...+.+.  ....+|..+.    ..+.+++|.-.|+......|..+......+.++.. ++++++
T Consensus       149 k~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~~~~ee  225 (299)
T KOG3081|consen  149 KMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-LGRYEE  225 (299)
T ss_pred             HHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH-hcCHHH
Confidence            3445555666666665554332  3344555444    35568888888988888788888888899999888 899999


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHhhccc
Q psy12719         82 AIKLIEKAISIDKSCMFAYETLGTIEVQRTFV  113 (116)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  113 (116)
                      |...++.++..++++++.+.++..+-...|..
T Consensus       226 Ae~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  226 AESLLEEALDKDAKDPETLANLIVLALHLGKD  257 (299)
T ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999988887777765

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.75  E-value=4.7e-08  Score=39.46  Aligned_cols=34  Identities=24%  Similarity=0.409  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719         62 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC   96 (116)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   96 (116)
                      +.+|+++|.++.. +|++++|+..++++++++|++
T Consensus         1 a~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQ-LGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHH-hCCchHHHHHHHHHHHHCcCC
Confidence            4679999999888 999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2376|consensus

Probab=98.75  E-value=2.2e-07  Score=59.16  Aligned_cols=108  Identities=13%  Similarity=0.121  Sum_probs=80.2

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...++|++|++...+.+...|++.++......+....++|++|....+.-.... ......+..+.|.|+ ++..++|.
T Consensus        22 ~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~fEKAYc~Yr-lnk~Deal   99 (652)
T KOG2376|consen   22 HGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFFEKAYCEYR-LNKLDEAL   99 (652)
T ss_pred             hccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhHHHHHHHHH-cccHHHHH
Confidence            4567899999999999999999999888888888888999998884443221111 112223678888887 88888888


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ..+.   ..++.+..+....|.+++.+|++++|
T Consensus       100 k~~~---~~~~~~~~ll~L~AQvlYrl~~ydea  129 (652)
T KOG2376|consen  100 KTLK---GLDRLDDKLLELRAQVLYRLERYDEA  129 (652)
T ss_pred             HHHh---cccccchHHHHHHHHHHHHHhhHHHH
Confidence            8887   44555566777788888888887764

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.74  E-value=1.8e-06  Score=50.06  Aligned_cols=92  Identities=16%  Similarity=0.200  Sum_probs=74.3

Q ss_pred             cchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH---HHHHHHHHHHHHhc--
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA---SLYVHRAMLMLQAR--   76 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~--   76 (116)
                      .+.|+|++|+..|+......|.+   ..+...++.++++.++++.|+...++-++..|.++   -+++..|.+++...  
T Consensus        45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~  124 (254)
T COG4105          45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD  124 (254)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence            46789999999999999998876   46888999999999999999999999999988774   46777787766521  


Q ss_pred             -----CCHHHHHHHHHHHHhcCCCc
Q psy12719         77 -----GNVDEAIKLIEKAISIDKSC   96 (116)
Q Consensus        77 -----~~~~~a~~~~~~~~~~~~~~   96 (116)
                           .-...|...++..+...|++
T Consensus       125 ~~rDq~~~~~A~~~f~~~i~ryPnS  149 (254)
T COG4105         125 VTRDQSAARAAFAAFKELVQRYPNS  149 (254)
T ss_pred             cccCHHHHHHHHHHHHHHHHHCCCC
Confidence                 22557777788888888876

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.74  E-value=1.5e-06  Score=52.98  Aligned_cols=110  Identities=15%  Similarity=0.099  Sum_probs=95.3

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC-CHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE-NASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      ...|+|.+|+....+.-+..+.....+..-+.....+|+++.+-.++.++-+..++ .......++..... .|+++.|.
T Consensus        95 l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~-~~d~~aA~  173 (400)
T COG3071          95 LFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN-RRDYPAAR  173 (400)
T ss_pred             HhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh-CCCchhHH
Confidence            34689999999999988777776777777788889999999999999999998554 45667788888787 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      ..+.+++...|..+.+......+|...|++.+
T Consensus       174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~  205 (400)
T COG3071         174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA  205 (400)
T ss_pred             HHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence            99999999999999999999999999998754

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.73  E-value=4.3e-08  Score=55.60  Aligned_cols=86  Identities=13%  Similarity=0.113  Sum_probs=78.1

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE  107 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  107 (116)
                      +..++..|..|-..|-+.-|+..|.+++.+.|+-+.++..+|..+.. .|+++.|.+.|...++++|...-+..+.|...
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~-a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~  143 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  143 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh-cccchHHHHHhhhHhccCCcchHHHhccceee
Confidence            56788899999999999999999999999999999999999998777 89999999999999999999988888888877


Q ss_pred             Hhhcccc
Q psy12719        108 VQRTFVV  114 (116)
Q Consensus       108 ~~~~~~~  114 (116)
                      .--|++.
T Consensus       144 YY~gR~~  150 (297)
T COG4785         144 YYGGRYK  150 (297)
T ss_pred             eecCchH
Confidence            7666664

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.72  E-value=9.4e-07  Score=60.79  Aligned_cols=38  Identities=18%  Similarity=0.074  Sum_probs=15.5

Q ss_pred             cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHhhccc
Q psy12719         76 RGNVDEAIKLIEKAISID-KSCMFAYETLGTIEVQRTFV  113 (116)
Q Consensus        76 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  113 (116)
                      .|++++|.+.++...+.+ +.++..|..+...+.+.|++
T Consensus       592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~  630 (1060)
T PLN03218        592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW  630 (1060)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Confidence            344444444444444332 22233344444444444443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.68  E-value=1.2e-07  Score=38.17  Aligned_cols=34  Identities=32%  Similarity=0.403  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719         62 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC   96 (116)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   96 (116)
                      +.+++.+|.+++. .|++++|++.++++++++|++
T Consensus         1 a~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence            4678999999888 999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.67  E-value=4.4e-07  Score=60.08  Aligned_cols=106  Identities=8%  Similarity=-0.062  Sum_probs=50.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC-CCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-PENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      |.+.|++++|.+.|++..   +.+..+|..+...|.+.|++++|...|++..... ..+..++..+...+.+ .|++++|
T Consensus       269 y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~-~g~~~~a  344 (697)
T PLN03081        269 YSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR-LALLEHA  344 (697)
T ss_pred             HHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-ccchHHH
Confidence            334556666666665542   2344556666666666666666666666554432 1122334444444333 4555555


Q ss_pred             HHHHHHHHhcC-CCcHHHHHHHHHHHHhhccc
Q psy12719         83 IKLIEKAISID-KSCMFAYETLGTIEVQRTFV  113 (116)
Q Consensus        83 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  113 (116)
                      .+.+..+++.. +.+..++..+...|.+.|++
T Consensus       345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~  376 (697)
T PLN03081        345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRM  376 (697)
T ss_pred             HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCH
Confidence            55544444432 22233344444444444443

>KOG3785|consensus

Probab=98.65  E-value=3.4e-07  Score=55.59  Aligned_cols=108  Identities=9%  Similarity=0.039  Sum_probs=70.5

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC-------------------------
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-------------------------   58 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------------------------   58 (116)
                      +...|+|++|...|+-+...+..+++.+.+++.+++-.|.|.+|...-.++-+..                         
T Consensus        67 ~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~  146 (557)
T KOG3785|consen   67 YFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSS  146 (557)
T ss_pred             HHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            4567888888888888777665566777777777777777777766655442211                         


Q ss_pred             -CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcc
Q psy12719         59 -PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTF  112 (116)
Q Consensus        59 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  112 (116)
                       .+...-...++.+++. .-.|.+|+..+.+.+..+|+....-..++.||.++.-
T Consensus       147 LqD~~EdqLSLAsvhYm-R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDY  200 (557)
T KOG3785|consen  147 LQDTLEDQLSLASVHYM-RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDY  200 (557)
T ss_pred             HhhhHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcch
Confidence             0011122344445454 4667888888888888888777666777777766543

>KOG2610|consensus

Probab=98.65  E-value=1.2e-06  Score=52.93  Aligned_cols=110  Identities=13%  Similarity=0.073  Sum_probs=92.3

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhcc-CCCCHH---HHHHHHHHHHHhcCCHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-DPENAS---LYVHRAMLMLQARGNVD   80 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~---~~~~~~~~~~~~~~~~~   80 (116)
                      ...|++.+|...+++.++..|.+..++..--..++.+|+.......+++.+.. +|+.|-   +.-.++..+.. .|-|+
T Consensus       114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~g~y~  192 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-CGIYD  192 (491)
T ss_pred             hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-hccch
Confidence            45678889999999999999999998888888999999999999999999987 666643   33345555445 89999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         81 EAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      +|++...++++++|.+.-+....+.++...|++.+
T Consensus       193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Ke  227 (491)
T KOG2610|consen  193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKE  227 (491)
T ss_pred             hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhh
Confidence            99999999999999998888888888888777765

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.63  E-value=3.6e-06  Score=46.97  Aligned_cols=106  Identities=10%  Similarity=0.055  Sum_probs=85.8

Q ss_pred             cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhc-cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12719          9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR-VDPENASLYVHRAMLMLQARGNVDEAIKLIE   87 (116)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   87 (116)
                      +.+.......+.++..|... -...+|+.....|++.+|...|++++. +.-.++..+..++...+. .+++..|...++
T Consensus        71 dP~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-~~~~A~a~~tLe  148 (251)
T COG4700          71 DPERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-IQEFAAAQQTLE  148 (251)
T ss_pred             ChhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-hccHHHHHHHHH
Confidence            34444555555566666643 467899999999999999999999987 455778889999999888 899999999999


Q ss_pred             HHHhcCCC--cHHHHHHHHHHHHhhcccccC
Q psy12719         88 KAISIDKS--CMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        88 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ...+.+|.  +|.....+++++..+|++.+|
T Consensus       149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~A  179 (251)
T COG4700         149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADA  179 (251)
T ss_pred             HHhhcCCccCCCCchHHHHHHHHhcCCchhH
Confidence            99999885  477788899999998887643

>KOG0551|consensus

Probab=98.62  E-value=5.7e-07  Score=53.89  Aligned_cols=86  Identities=14%  Similarity=0.229  Sum_probs=48.8

Q ss_pred             chhcHHHHHHHHHHHHhhCCCh----hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNV----VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE   81 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (116)
                      +.++|..|+..|.+.++..-.+    ...|.+.+-+....|+|..++..+.+++..+|.+..+++.-+.|++. +..+.+
T Consensus        93 K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e-Le~~~~  171 (390)
T KOG0551|consen   93 KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE-LERFAE  171 (390)
T ss_pred             HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH-HHHHHH
Confidence            3445566666666666554332    22455555555566666666666666666666666666666666555 566555


Q ss_pred             HHHHHHHHHhc
Q psy12719         82 AIKLIEKAISI   92 (116)
Q Consensus        82 a~~~~~~~~~~   92 (116)
                      |..+++..+..
T Consensus       172 a~nw~ee~~~~  182 (390)
T KOG0551|consen  172 AVNWCEEGLQI  182 (390)
T ss_pred             HHHHHhhhhhh
Confidence            55555555443

>KOG1070|consensus

Probab=98.62  E-value=8.2e-07  Score=61.50  Aligned_cols=111  Identities=14%  Similarity=0.237  Sum_probs=98.2

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC--CHHHHHHHHHHHHHhcCCHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE--NASLYVHRAMLMLQARGNVD   80 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~   80 (116)
                      +|...+.+++|.++++..++.+.....+|..+|..++++++-++|...+.+|++.-|.  +.......+.+.++ .|+.+
T Consensus      1539 iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk-~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK-YGDAE 1617 (1710)
T ss_pred             HHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-cCCch
Confidence            3556778999999999999999888899999999999999999999999999999987  67778888888888 89999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         81 EAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      ++...|+-.+...|...++|..+......+|+.+
T Consensus      1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~ 1651 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIK 1651 (1710)
T ss_pred             hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHH
Confidence            9999999999999999999999888887776543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.62  E-value=2.4e-06  Score=54.26  Aligned_cols=106  Identities=13%  Similarity=0.050  Sum_probs=87.1

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC----HHHHHHHHHHHHHhcCCHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----ASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      ..+.+.+.+.+.......|++.-..+..|.++...|+.++|++.+++++.....-    .-.++.++.++.. +.++++|
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~~A  324 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWEEA  324 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHHHH
Confidence            4567889999999999999999999999999999999999999999988543322    2358899999887 8999999


Q ss_pred             HHHHHHHHhcCCCcH-HHHHHHHHHHHhhccc
Q psy12719         83 IKLIEKAISIDKSCM-FAYETLGTIEVQRTFV  113 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~  113 (116)
                      ...+.+..+.+.-+. ...+..|.++...++.
T Consensus       325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence            999999998766544 3445666677777765

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.61  E-value=1.1e-06  Score=52.34  Aligned_cols=92  Identities=16%  Similarity=0.189  Sum_probs=69.9

Q ss_pred             ccch-hcHHHHHHHHHHHHhhCCCh------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC-------HHHHHHHH
Q psy12719          4 PGDR-ERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-------ASLYVHRA   69 (116)
Q Consensus         4 ~~~~-~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~   69 (116)
                      +... |++++|++.|++++......      ..++..+|.++...|+|++|+..|++......++       ...++..+
T Consensus       124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~  203 (282)
T PF14938_consen  124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI  203 (282)
T ss_dssp             HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence            4555 89999999999999875322      4577889999999999999999999987653221       13456778


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719         70 MLMLQARGNVDEAIKLIEKAISIDKSC   96 (116)
Q Consensus        70 ~~~~~~~~~~~~a~~~~~~~~~~~~~~   96 (116)
                      .|++. .|++..|...+++....+|+.
T Consensus       204 l~~L~-~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  204 LCHLA-MGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             HHHHH-TT-HHHHHHHHHHHGTTSTTS
T ss_pred             HHHHH-cCCHHHHHHHHHHHHhhCCCC
Confidence            88777 899999999999999998854

>KOG2053|consensus

Probab=98.61  E-value=3.5e-06  Score=56.11  Aligned_cols=107  Identities=19%  Similarity=0.105  Sum_probs=88.5

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      .+.+++.+|.....+.++..|+..-+...-|.++.+.|+.++|..+++..-...+++...+-.+-.+|-. +++++++..
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-~~~~d~~~~   98 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD-LGKLDEAVH   98 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH-HhhhhHHHH
Confidence            3568899999999999999999988888899999999999999988887777777888888888888555 999999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhhccc
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQRTFV  113 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  113 (116)
                      .|++++..+|+ .+....+=.+|.+.+.+
T Consensus        99 ~Ye~~~~~~P~-eell~~lFmayvR~~~y  126 (932)
T KOG2053|consen   99 LYERANQKYPS-EELLYHLFMAYVREKSY  126 (932)
T ss_pred             HHHHHHhhCCc-HHHHHHHHHHHHHHHHH
Confidence            99999999999 55555444455444433

>KOG1308|consensus

Probab=98.60  E-value=1.6e-08  Score=60.35  Aligned_cols=91  Identities=16%  Similarity=0.196  Sum_probs=82.5

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      ....|.+++|++.|..++.++|.....+...+.++...++...|+..+..++.++|++..-+-..+..+-. +|++++|.
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl-lg~~e~aa  202 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL-LGNWEEAA  202 (377)
T ss_pred             HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH-hhchHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999888888888555 89999999


Q ss_pred             HHHHHHHhcCCC
Q psy12719         84 KLIEKAISIDKS   95 (116)
Q Consensus        84 ~~~~~~~~~~~~   95 (116)
                      ..+..+.+++-+
T Consensus       203 ~dl~~a~kld~d  214 (377)
T KOG1308|consen  203 HDLALACKLDYD  214 (377)
T ss_pred             HHHHHHHhcccc
Confidence            999999887543

>KOG0551|consensus

Probab=98.58  E-value=9.2e-07  Score=53.02  Aligned_cols=87  Identities=17%  Similarity=0.185  Sum_probs=76.6

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETL  103 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  103 (116)
                      +.-+..-|+-|++.++|..|+..|...|+..-.+    ...|.+++-+.+. .|+|..++....+++..+|.+..+++.-
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            4466778999999999999999999999875443    5578999999888 8999999999999999999999999999


Q ss_pred             HHHHHhhccccc
Q psy12719        104 GTIEVQRTFVVL  115 (116)
Q Consensus       104 ~~~~~~~~~~~~  115 (116)
                      +.|+..+.++++
T Consensus       160 Akc~~eLe~~~~  171 (390)
T KOG0551|consen  160 AKCLLELERFAE  171 (390)
T ss_pred             hHHHHHHHHHHH
Confidence            999998888654

>PLN03077 Protein ECB2; Provisional

Probab=98.56  E-value=1.2e-06  Score=59.37  Aligned_cols=107  Identities=12%  Similarity=0.097  Sum_probs=59.5

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhcc--CCCCHHHHHHHHHHHHHhcCCHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--DPENASLYVHRAMLMLQARGNVDE   81 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~   81 (116)
                      |.+.|+.++|...|...    +.+...|..+...|...|+.++|+..|++..+.  .|+.......+ ..+.+ .|..++
T Consensus       534 y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll-~a~~~-~g~v~e  607 (857)
T PLN03077        534 YVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL-CACSR-SGMVTQ  607 (857)
T ss_pred             HHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH-HHHhh-cChHHH
Confidence            34456666666666654    344556666666667777777777777666553  34433322222 23234 566666


Q ss_pred             HHHHHHHHHhcCC--CcHHHHHHHHHHHHhhcccccC
Q psy12719         82 AIKLIEKAISIDK--SCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        82 a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      |.+.|....+..+  -+...+..+..++.+.|++++|
T Consensus       608 a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA  644 (857)
T PLN03077        608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA  644 (857)
T ss_pred             HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence            6666666653321  1234556666666666665543

>KOG2396|consensus

Probab=98.55  E-value=8.6e-06  Score=51.40  Aligned_cols=95  Identities=11%  Similarity=0.183  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12719         11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAI   90 (116)
Q Consensus        11 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   90 (116)
                      .+-...|..+....+.+...|........+.+.+.+....|.+++..+|+++..|..-+.-.+...-+.+.|...+.+++
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL  167 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL  167 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence            34467889999999999999999988888888899999999999999999999999999988875556999999999999


Q ss_pred             hcCCCcHHHHHHHHH
Q psy12719         91 SIDKSCMFAYETLGT  105 (116)
Q Consensus        91 ~~~~~~~~~~~~l~~  105 (116)
                      ..+|+++..|...=.
T Consensus       168 R~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  168 RFNPDSPKLWKEYFR  182 (568)
T ss_pred             hcCCCChHHHHHHHH
Confidence            999999988775433

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.55  E-value=1e-06  Score=48.54  Aligned_cols=64  Identities=20%  Similarity=0.339  Sum_probs=50.0

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcC-----------hhhHHHHHHHHhccCCCCHHHHHHHHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED-----------FDGAEEYFNRSIRVDPENASLYVHRAML   71 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~   71 (116)
                      .-+++|+.-|++++.++|+..+++..+|+++...+.           |++|..+|+++...+|.+......+..+
T Consensus        49 ~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   49 KMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            457899999999999999999999999999986543           7889999999999999997765555443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2471|consensus

Probab=98.53  E-value=2.9e-07  Score=57.81  Aligned_cols=103  Identities=11%  Similarity=0.121  Sum_probs=83.0

Q ss_pred             chhcHHHHHHHHHHH-HhhCCC--------hhHHHHHHHHHHHhhcChhhHHHHHHHHhcc---------CC--------
Q psy12719          6 DRERVEQSLKEFRNF-VDTHSN--------VVEACTLFAQVLVDQEDFDGAEEYFNRSIRV---------DP--------   59 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---------~~--------   59 (116)
                      -.|++.+|.+.+... +...|.        ...+|.++|.++++.+.|.-+..+|.++++.         .|        
T Consensus       252 ~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~  331 (696)
T KOG2471|consen  252 AHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQ  331 (696)
T ss_pred             HhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhc
Confidence            457888888777654 223333        2346789999999999999999999999851         11        


Q ss_pred             -CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719         60 -ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ  109 (116)
Q Consensus        60 -~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (116)
                       .+..+.|+.|..++. .|++-.|.++|.+++.....+|..|..++.+...
T Consensus       332 nks~eilYNcG~~~Lh-~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  332 NKSMEILYNCGLLYLH-SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             ccchhhHHhhhHHHHh-cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence             235689999999888 8999999999999999999999999999998764

>KOG3081|consensus

Probab=98.50  E-value=8.3e-06  Score=47.71  Aligned_cols=91  Identities=11%  Similarity=0.154  Sum_probs=77.2

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCH-HHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV-DEAIKL   85 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~   85 (116)
                      .+.+.+|.-+|++.-...|..+....+.+.++..+++|++|...++.++..++..+.++.++..+... .|.. +-..+.
T Consensus       186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~-~Gkd~~~~~r~  264 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALH-LGKDAEVTERN  264 (299)
T ss_pred             chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCChHHHHHH
Confidence            35688999999999887888899999999999999999999999999999999999999999888666 6655 445566


Q ss_pred             HHHHHhcCCCcHH
Q psy12719         86 IEKAISIDKSCMF   98 (116)
Q Consensus        86 ~~~~~~~~~~~~~   98 (116)
                      +.+....+|+.+.
T Consensus       265 l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  265 LSQLKLSHPEHPF  277 (299)
T ss_pred             HHHHHhcCCcchH
Confidence            6777777887753

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.48  E-value=2.7e-06  Score=50.67  Aligned_cols=87  Identities=13%  Similarity=0.092  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719         29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV  108 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  108 (116)
                      -+|..+.....+.+..+.|+.+|.++.+..+....+|...|.+.+...++.+.|...|+.+++..|.+...|......+.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~   81 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            36778888888888999999999999977777889999999997774567777999999999999999999999988888


Q ss_pred             hhccccc
Q psy12719        109 QRTFVVL  115 (116)
Q Consensus       109 ~~~~~~~  115 (116)
                      ..++.+.
T Consensus        82 ~~~d~~~   88 (280)
T PF05843_consen   82 KLNDINN   88 (280)
T ss_dssp             HTT-HHH
T ss_pred             HhCcHHH
Confidence            8887654

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.48  E-value=1.2e-05  Score=45.29  Aligned_cols=102  Identities=20%  Similarity=0.365  Sum_probs=55.8

Q ss_pred             chhcHHHHHHHHHHHHhhCC---ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC-CHHHHHHHHHHHHHhcCCHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHS---NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE-NASLYVHRAMLMLQARGNVDE   81 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~   81 (116)
                      ..++++.|...+.+++...|   .........+..+...++++.++..+.+++...+. ....+..++..+.. .+.++.
T Consensus       142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  220 (291)
T COG0457         142 ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK-LGKYEE  220 (291)
T ss_pred             HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH-cccHHH
Confidence            45556666666666655444   22334444444455556666666666666666665 45556666665444 556666


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719         82 AIKLIEKAISIDKSCMFAYETLGTIEV  108 (116)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~l~~~~~  108 (116)
                      +...+..++...|.....+..++..+.
T Consensus       221 a~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (291)
T COG0457         221 ALEYYEKALELDPDNAEALYNLALLLL  247 (291)
T ss_pred             HHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence            666666666665554334444444433

>KOG3785|consensus

Probab=98.48  E-value=3e-06  Score=51.69  Aligned_cols=83  Identities=17%  Similarity=0.111  Sum_probs=69.3

Q ss_pred             chhcHHHHHHHHHHHHhhCCCh-hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNV-VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      ...+|..|+..++-....+.+. ..+-..+|.+++..|+|++|...|.-+...+..+...+.+++.+.+. +|.|.+|..
T Consensus        34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-Lg~Y~eA~~  112 (557)
T KOG3785|consen   34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY-LGQYIEAKS  112 (557)
T ss_pred             hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-HHHHHHHHH
Confidence            4567888999888887665443 35667889999999999999999999988777788899999999988 899999987


Q ss_pred             HHHHH
Q psy12719         85 LIEKA   89 (116)
Q Consensus        85 ~~~~~   89 (116)
                      ...++
T Consensus       113 ~~~ka  117 (557)
T KOG3785|consen  113 IAEKA  117 (557)
T ss_pred             HHhhC
Confidence            66554

>KOG1915|consensus

Probab=98.47  E-value=1.1e-05  Score=50.88  Aligned_cols=109  Identities=19%  Similarity=0.226  Sum_probs=86.7

Q ss_pred             chhcHHHHHHHHHHHHhhCCCh----hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNV----VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE   81 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (116)
                      ...+.+.+.+.|+.++++-|..    +..|...|....++.+...|...+-.+|-..|.+-...- ...+-++ +++++.
T Consensus       378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~-YIelElq-L~efDR  455 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKG-YIELELQ-LREFDR  455 (677)
T ss_pred             HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHH-HHHHHHH-HhhHHH
Confidence            3467788889999999988865    668888888888999999999999999988887643322 2223345 788999


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         82 AIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ....|++.++.+|.+-.+|...|.....+|+.+.|
T Consensus       456 cRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRa  490 (677)
T KOG1915|consen  456 CRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRA  490 (677)
T ss_pred             HHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHH
Confidence            99999999999999888899888888888887653

>KOG2796|consensus

Probab=98.46  E-value=3.5e-06  Score=49.38  Aligned_cols=91  Identities=21%  Similarity=0.321  Sum_probs=70.9

Q ss_pred             cchhcHHHHHHHHHHHHhhC------CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCC
Q psy12719          5 GDRERVEQSLKEFRNFVDTH------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN   78 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   78 (116)
                      ++.||-..|..+|+..-+..      .....+..+.+.++...+++.+|...+.+++..+|.++.+..+.+.|++. .|+
T Consensus       223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY-lg~  301 (366)
T KOG2796|consen  223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY-LGK  301 (366)
T ss_pred             HhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH-HHH
Confidence            45677777777777444332      12234667777788888888888888888889999999999999998888 899


Q ss_pred             HHHHHHHHHHHHhcCCCc
Q psy12719         79 VDEAIKLIEKAISIDKSC   96 (116)
Q Consensus        79 ~~~a~~~~~~~~~~~~~~   96 (116)
                      ..+|++.++.+++..|..
T Consensus       302 l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  302 LKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HHHHHHHHHHHhccCCcc
Confidence            999999999999888864

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.46  E-value=1.5e-05  Score=42.88  Aligned_cols=85  Identities=16%  Similarity=0.274  Sum_probs=65.5

Q ss_pred             hhcHHHHHHHHHHHHhhCCCh----------------------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNV----------------------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL   64 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   64 (116)
                      .++...+++.+.+++....+.                      ..+...++..+...|++++|+..+++++..+|.+..+
T Consensus        19 ~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~   98 (146)
T PF03704_consen   19 AGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEA   98 (146)
T ss_dssp             TT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHH
Confidence            457788888888888776221                      1134556777788999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         65 YVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        65 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      +..+-.++.. .|+...|.+.|.+....
T Consensus        99 ~~~lm~~~~~-~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   99 YRLLMRALAA-QGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence            9999999888 89999999999888653

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2376|consensus

Probab=98.45  E-value=6.5e-06  Score=52.78  Aligned_cols=109  Identities=22%  Similarity=0.260  Sum_probs=78.8

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC-------------------------
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-------------------------   58 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------------------------   58 (116)
                      ..+.+..++|+..++   -.++.+....-..|.++++.++|++|...|+..++.+                         
T Consensus        89 ~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q  165 (652)
T KOG2376|consen   89 EYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ  165 (652)
T ss_pred             HHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH
Confidence            345667777777776   3444555577788999999999999999999876544                         


Q ss_pred             -----CC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCc-------HHHHHHHHHHHHhhcccccC
Q psy12719         59 -----PE-NASLYVHRAMLMLQARGNVDEAIKLIEKAISI--------DKSC-------MFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        59 -----~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~-------~~~~~~l~~~~~~~~~~~~a  116 (116)
                           |. +-...|+.+..+.. .|+|.+|++.++.++..        +.+.       ..+...++.++..+|+.++|
T Consensus       166 ~v~~v~e~syel~yN~Ac~~i~-~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea  243 (652)
T KOG2376|consen  166 SVPEVPEDSYELLYNTACILIE-NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA  243 (652)
T ss_pred             hccCCCcchHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence                 21 34467888988777 89999999999999443        1111       23566788888888887664

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.45  E-value=4.1e-07  Score=36.59  Aligned_cols=30  Identities=23%  Similarity=0.555  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHhhcChhhHHHHHHHHhccCC
Q psy12719         30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDP   59 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~   59 (116)
                      +|..+|.++...|++++|..+|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            455555555555555555555555555555

...

>KOG4507|consensus

Probab=98.44  E-value=4.9e-06  Score=53.65  Aligned_cols=103  Identities=10%  Similarity=0.133  Sum_probs=90.6

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhH-HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVE-ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      .-.|+...|+.++..++...|...+ ...+++++....+-.-+|...+.+++.++...+-.++.+|.+++. +++.+.|+
T Consensus       618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~-l~~i~~a~  696 (886)
T KOG4507|consen  618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA-LKNISGAL  696 (886)
T ss_pred             eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHH-HhhhHHHH
Confidence            4578899999999999999987754 467899999999999999999999999998888899999999888 99999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEV  108 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~  108 (116)
                      +.++.+++.+|+++.+...|-.+..
T Consensus       697 ~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  697 EAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHHHHHhcCCCChhhHHHHHHHHH
Confidence            9999999999999887776655544

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=6.1e-06  Score=48.86  Aligned_cols=106  Identities=16%  Similarity=0.138  Sum_probs=75.4

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHH------------------------------
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS------------------------------   54 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a------------------------------   54 (116)
                      ...|++.+|...|..++...|++.++...++.++...|+.+.|...+...                              
T Consensus       145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~  224 (304)
T COG3118         145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD  224 (304)
T ss_pred             hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence            45789999999999999999999999999999999999998887666542                              


Q ss_pred             ----hccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHhhc
Q psy12719         55 ----IRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS--CMFAYETLGTIEVQRT  111 (116)
Q Consensus        55 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~  111 (116)
                          +..+|++..+.+.++..+.. .|+.+.|.+.+-..+..+.+  +..+...+-.++...|
T Consensus       225 l~~~~aadPdd~~aa~~lA~~~~~-~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         225 LQRRLAADPDDVEAALALADQLHL-VGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence                12236666666666666555 66677666666666655432  2444555555554444

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.40  E-value=2.9e-06  Score=53.42  Aligned_cols=107  Identities=15%  Similarity=0.160  Sum_probs=67.2

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC---------------------C---
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE---------------------N---   61 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---------------------~---   61 (116)
                      +..+...-++...++++.+|++++++..++.-  ......++.++++++++....                     +   
T Consensus       180 RERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~  257 (539)
T PF04184_consen  180 RERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV  257 (539)
T ss_pred             hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence            34556667777788888888888877777652  223345555555555432200                     0   


Q ss_pred             -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHhhccccc
Q psy12719         62 -ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS--CMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        62 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~  115 (116)
                       ..+...++.|..+ .|+.++|++.++..++.+|.  ...+..+|..++...+.+.+
T Consensus       258 ~~y~KrRLAmCark-lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad  313 (539)
T PF04184_consen  258 LVYAKRRLAMCARK-LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYAD  313 (539)
T ss_pred             hhhhHHHHHHHHHH-hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHH
Confidence             2244567777555 78888888888888777664  35567777777777666654

The molecular function of this protein is uncertain.

>KOG2796|consensus

Probab=98.39  E-value=5.1e-06  Score=48.75  Aligned_cols=110  Identities=14%  Similarity=0.158  Sum_probs=90.5

Q ss_pred             cchhcHHHHHHHHHHHHhhC-CChhHHHHHHHHHHHhhcChhhHHHHHHHHhc----cC--CCCHHHHHHHHHHHHHhcC
Q psy12719          5 GDRERVEQSLKEFRNFVDTH-SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR----VD--PENASLYVHRAMLMLQARG   77 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~--~~~~~~~~~~~~~~~~~~~   77 (116)
                      ...++|.-+.+.+.+.++.+ |..+.....+|.+.++-|+.+.|..+|++.-+    ++  .....+..+.+.+++- .+
T Consensus       188 lG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg-~n  266 (366)
T KOG2796|consen  188 LGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG-QN  266 (366)
T ss_pred             hcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheec-cc
Confidence            34678889999999999988 55677888999999999999999999985432    22  2334567778888777 89


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         78 NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        78 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      ++..|...+.+++..+|.++.+-.+-+.|....|+...
T Consensus       267 n~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~D  304 (366)
T KOG2796|consen  267 NFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKD  304 (366)
T ss_pred             chHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888877654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.37  E-value=4.2e-05  Score=43.02  Aligned_cols=104  Identities=23%  Similarity=0.329  Sum_probs=65.4

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHH-HHHhhcChhhHHHHHHHHhccCC---CCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQ-VLVDQEDFDGAEEYFNRSIRVDP---ENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      .+++..++..+..++...+.........+. ++...++++.|...+.+++...|   .........+..+.. .++++.+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a  186 (291)
T COG0457         108 LGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEA-LGRYEEA  186 (291)
T ss_pred             HhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH-hcCHHHH
Confidence            344566677777777666655444444444 66777777777777777766555   234444445544344 5777777


Q ss_pred             HHHHHHHHhcCCC-cHHHHHHHHHHHHhhc
Q psy12719         83 IKLIEKAISIDKS-CMFAYETLGTIEVQRT  111 (116)
Q Consensus        83 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  111 (116)
                      ...+.+++...+. ....+..++..+...+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         187 LELLEKALKLNPDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             HHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence            7777777777777 4666666666666554

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.36  E-value=3.5e-05  Score=44.89  Aligned_cols=80  Identities=16%  Similarity=0.172  Sum_probs=68.3

Q ss_pred             hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH---HHH
Q psy12719         27 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM---FAY  100 (116)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~  100 (116)
                      .+..++.-|....+.|++++|...|+.+....|.+   ..+...++.++++ .+++++|+..+++.+...|+++   -++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            35678899999999999999999999999998876   5688999999998 8999999999999999998774   345


Q ss_pred             HHHHHHH
Q psy12719        101 ETLGTIE  107 (116)
Q Consensus       101 ~~l~~~~  107 (116)
                      +..|.++
T Consensus       112 YlkgLs~  118 (254)
T COG4105         112 YLKGLSY  118 (254)
T ss_pred             HHHHHHH
Confidence            5555553

>PRK10941 hypothetical protein; Provisional

Probab=98.36  E-value=2.9e-05  Score=45.98  Aligned_cols=77  Identities=12%  Similarity=0.067  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy12719         30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE  107 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  107 (116)
                      ...++-.++.+.++++.|..+.+..+...|+++.-+..+|.++.+ +|.+..|...++..++..|+++.+-.....+.
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            456677788899999999999999999999999999999999887 99999999999999999999987655544443

>KOG1130|consensus

Probab=98.35  E-value=1.4e-06  Score=53.92  Aligned_cols=112  Identities=12%  Similarity=0.004  Sum_probs=76.1

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh------hHHHHHHHHHHHhhcChhhHHHHHHHHhcc----CCCC--HHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSIRV----DPEN--ASLYVHRAML   71 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~--~~~~~~~~~~   71 (116)
                      |.-.|+|+.|+...+.-+.+....      -+++.++|+++.-.|+++.|+++|...+.+    ....  +..-|.+|..
T Consensus       205 yYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNt  284 (639)
T KOG1130|consen  205 YYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNT  284 (639)
T ss_pred             eeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhH
Confidence            445678888888777766554222      347778888888888888888888776543    2222  3446778888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHhhcccccC
Q psy12719         72 MLQARGNVDEAIKLIEKAISIDK------SCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        72 ~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      |.- ..++.+|+.+..+-+.+..      ....+.+.||..+...|..++|
T Consensus       285 ytl-l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kA  334 (639)
T KOG1130|consen  285 YTL-LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKA  334 (639)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHH
Confidence            666 7888888888877665522      3356677788877777765543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.32  E-value=2.1e-05  Score=53.66  Aligned_cols=111  Identities=9%  Similarity=0.034  Sum_probs=83.6

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChh-----HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHHHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVV-----EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLML   73 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~~   73 (116)
                      ...|++++|...+++++...|...     .+...+|.++...|++++|...+.+++......      ..++..+|.+++
T Consensus       463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~  542 (903)
T PRK04841        463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF  542 (903)
T ss_pred             HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence            457899999999999988554432     355678888899999999999999998654321      235677888877


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHhhcccccC
Q psy12719         74 QARGNVDEAIKLIEKAISIDKS--------CMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        74 ~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      . .|++++|...+.+++.....        ....+..++.++...|++++|
T Consensus       543 ~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A  592 (903)
T PRK04841        543 A-QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEA  592 (903)
T ss_pred             H-CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence            7 89999999999998875221        123455778888888887754

>KOG1130|consensus

Probab=98.32  E-value=3.8e-07  Score=56.33  Aligned_cols=106  Identities=14%  Similarity=0.114  Sum_probs=78.2

Q ss_pred             cHHHHHHHHHHHHhhCCCh------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHHHHHHHHHhc
Q psy12719          9 RVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQAR   76 (116)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~   76 (116)
                      .++.|+++|..-+++....      .+++.++|+.|+-.|+|+.|+..-+.-+.+....      ..++.++|.++.. +
T Consensus       170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif-l  248 (639)
T KOG1130|consen  170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF-L  248 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh-h
Confidence            4667777777766655333      3478889999999999999999887766665433      3578999999888 8


Q ss_pred             CCHHHHHHHHHHHHhc----CCCc--HHHHHHHHHHHHhhccccc
Q psy12719         77 GNVDEAIKLIEKAISI----DKSC--MFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        77 ~~~~~a~~~~~~~~~~----~~~~--~~~~~~l~~~~~~~~~~~~  115 (116)
                      |+++.|++.|+..+.+    ....  ...-+.||..|....++.+
T Consensus       249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~k  293 (639)
T KOG1130|consen  249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQK  293 (639)
T ss_pred             cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHH
Confidence            9999999999887755    2222  3445677777777666654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=98.31  E-value=1.8e-06  Score=34.30  Aligned_cols=30  Identities=33%  Similarity=0.496  Sum_probs=15.7

Q ss_pred             HHHHHHHHHhhcChhhHHHHHHHHhccCCC
Q psy12719         31 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPE   60 (116)
Q Consensus        31 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~   60 (116)
                      ++.+|.++...|++++|+..|++++...|+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            444555555555555555555555555544

>KOG1941|consensus

Probab=98.31  E-value=5.8e-06  Score=50.52  Aligned_cols=111  Identities=14%  Similarity=0.151  Sum_probs=85.4

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChh------HHHHHHHHHHHhhcChhhHHHHHHHHhccCC----CC------HHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVV------EACTLFAQVLVDQEDFDGAEEYFNRSIRVDP----EN------ASLYVH   67 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~------~~~~~~   67 (116)
                      +..++.++++++.|+.+++...++.      .++..+|.++-...++++|..+..++..+-.    ++      ..+.+.
T Consensus       132 hlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyh  211 (518)
T KOG1941|consen  132 HLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYH  211 (518)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHH
Confidence            4456789999999999998765443      4788899999999999999999888876532    22      235677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHhhccccc
Q psy12719         68 RAMLMLQARGNVDEAIKLIEKAISID------KSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        68 ~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      ++..+-. +|+...|.++.+++.++.      +-.......+|.+|...|+.+.
T Consensus       212 maValR~-~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~  264 (518)
T KOG1941|consen  212 MAVALRL-LGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLER  264 (518)
T ss_pred             HHHHHHH-hcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhH
Confidence            8888544 899999999999987762      2235667788999998888764

>KOG0376|consensus

Probab=98.28  E-value=3.2e-07  Score=57.08  Aligned_cols=83  Identities=24%  Similarity=0.279  Sum_probs=73.4

Q ss_pred             HHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q psy12719         32 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRT  111 (116)
Q Consensus        32 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  111 (116)
                      ..-+...+.-++++.|+..|.++|+++|+++..+-+++..+++ .+++..|+..+.++++.+|....++...|.+....+
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK-~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK-VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG   86 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhhee-echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence            4556777888999999999999999999999999999999888 899999999999999999999888888887777776


Q ss_pred             cccc
Q psy12719        112 FVVL  115 (116)
Q Consensus       112 ~~~~  115 (116)
                      .+.+
T Consensus        87 ~~~~   90 (476)
T KOG0376|consen   87 EFKK   90 (476)
T ss_pred             HHHH
Confidence            6554

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=98.28  E-value=8.9e-05  Score=40.42  Aligned_cols=74  Identities=9%  Similarity=0.003  Sum_probs=62.0

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD   80 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (116)
                      ..++.+++...+...--+.|+.+..-..-|.++..+|+|.+|+..++.+....|..+.+--.++.|++. +++.+
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~-~~D~~   95 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA-LGDPS   95 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-cCChH
Confidence            345777888888888788899988888889999999999999999999888888888888888888666 77765

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.27  E-value=3.2e-06  Score=33.91  Aligned_cols=32  Identities=25%  Similarity=0.445  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12719         63 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS   95 (116)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   95 (116)
                      .+|+.+|.++.. +|++++|.+.++++++.+|+
T Consensus         2 ~~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQ-LGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC
Confidence            578999999887 99999999999999999884

...

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=98.17  E-value=5.9e-06  Score=32.77  Aligned_cols=33  Identities=21%  Similarity=0.220  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719         63 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC   96 (116)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   96 (116)
                      .+++.+|.++.. .|++++|++.+++++...|++
T Consensus         1 ~a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYK-LGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcCC
Confidence            367899999888 899999999999999999974

>KOG1308|consensus

Probab=98.17  E-value=3.3e-07  Score=54.99  Aligned_cols=81  Identities=27%  Similarity=0.292  Sum_probs=72.2

Q ss_pred             HHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        35 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      +.-....|.++.|++.|..+|.++|.+...+..++.++++ ++....|+..+..++.++|+...-+...+.+...+|+++
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e  199 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE  199 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH
Confidence            3445578999999999999999999999999999999888 999999999999999999999888888888888888876


Q ss_pred             cC
Q psy12719        115 LW  116 (116)
Q Consensus       115 ~a  116 (116)
                      +|
T Consensus       200 ~a  201 (377)
T KOG1308|consen  200 EA  201 (377)
T ss_pred             HH
Confidence            54

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=98.16  E-value=4.2e-06  Score=34.16  Aligned_cols=25  Identities=20%  Similarity=0.505  Sum_probs=15.0

Q ss_pred             HHHHHHHHHhhcChhhHHHHHHHHh
Q psy12719         31 CTLFAQVLVDQEDFDGAEEYFNRSI   55 (116)
Q Consensus        31 ~~~~~~~~~~~~~~~~A~~~~~~a~   55 (116)
                      +..+|.+|...|++++|+.+|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4556666666666666666666643

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.15  E-value=0.00017  Score=38.76  Aligned_cols=81  Identities=19%  Similarity=0.190  Sum_probs=58.0

Q ss_pred             HHHHHhhcChhhHHHHHHHHhccCCCC----------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         35 AQVLVDQEDFDGAEEYFNRSIRVDPEN----------------------ASLYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        35 ~~~~~~~~~~~~A~~~~~~a~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      |......++...++..+.+++.+....                      ..+...++..+.. .|++++|+..+.+++..
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~l~~   91 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLE-AGDYEEALRLLQRALAL   91 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHhc
Confidence            444455667777888888877654111                      1244556666566 89999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHhhcccccC
Q psy12719         93 DKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        93 ~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +|.+..++..+..++...|+..+|
T Consensus        92 dP~~E~~~~~lm~~~~~~g~~~~A  115 (146)
T PF03704_consen   92 DPYDEEAYRLLMRALAAQGRRAEA  115 (146)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHH
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHHH
Confidence            999999999999999999987653

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.13  E-value=0.00016  Score=44.71  Aligned_cols=109  Identities=13%  Similarity=0.051  Sum_probs=81.7

Q ss_pred             ccccchhcHHHHHHHHHHHHhh----CCChhHHHHHHHHHHHh---hcChhhHHHHHHH-HhccCCCCHHHHHHHHHHHH
Q psy12719          2 IVPGDRERVEQSLKEFRNFVDT----HSNVVEACTLFAQVLVD---QEDFDGAEEYFNR-SIRVDPENASLYVHRAMLML   73 (116)
Q Consensus         2 ~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~-a~~~~~~~~~~~~~~~~~~~   73 (116)
                      +.|.+..+|+.-+...+..-..    -++...+...+|.++.+   .|+.++|+..+.. .....+.++..+...|.+|-
T Consensus       149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK  228 (374)
T PF13281_consen  149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYK  228 (374)
T ss_pred             HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            4577888999998888887666    35567788889999988   9999999999998 55566788889999998864


Q ss_pred             Hh--------cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q psy12719         74 QA--------RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRT  111 (116)
Q Consensus        74 ~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  111 (116)
                      ..        ....++|+..|.++.+.+|+.- .-.+++.++...|
T Consensus       229 D~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y-~GIN~AtLL~~~g  273 (374)
T PF13281_consen  229 DLFLESNFTDRESLDKAIEWYRKGFEIEPDYY-SGINAATLLMLAG  273 (374)
T ss_pred             HHHHHcCccchHHHHHHHHHHHHHHcCCcccc-chHHHHHHHHHcC
Confidence            31        2358899999999999987542 2344444444444

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.11  E-value=0.00016  Score=49.50  Aligned_cols=110  Identities=13%  Similarity=0.114  Sum_probs=81.4

Q ss_pred             chhcHHHHHHHHHHHHhhCCC---------hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH-----HHHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSN---------VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA-----SLYVHRAML   71 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~   71 (116)
                      ..++++++...+..+....+.         .......++.++...|++++|...+++++...|...     .+...+|.+
T Consensus       421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~  500 (903)
T PRK04841        421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV  500 (903)
T ss_pred             HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence            457889999888887654322         123445678888899999999999999988554432     345678888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhhcccccC
Q psy12719         72 MLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        72 ~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.. .|++++|...+.+++......      ..++..++.++...|++++|
T Consensus       501 ~~~-~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A  550 (903)
T PRK04841        501 HHC-KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAA  550 (903)
T ss_pred             HHH-cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence            766 899999999999998763321      34567788899989987754

>KOG3824|consensus

Probab=98.11  E-value=3.2e-05  Score=46.55  Aligned_cols=71  Identities=15%  Similarity=0.150  Sum_probs=46.3

Q ss_pred             HHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy12719         34 FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGT  105 (116)
Q Consensus        34 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~  105 (116)
                      .+.-..+.|+.++|...|+.++.++|+++.++..+|...-. .++..+|-.+|-+++..+|.+.+++.+.++
T Consensus       122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            33344466777777777777777777777777777776444 566677777777777777766665555443

>KOG1585|consensus

Probab=98.11  E-value=9e-05  Score=43.20  Aligned_cols=112  Identities=13%  Similarity=0.136  Sum_probs=77.7

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCCh------hHHHHHHHHHHHhhcChhhHHHHHHHHhccC-----CCCHH-HHHHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-----PENAS-LYVHRAM   70 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~-~~~~~~~   70 (116)
                      .|...++|++|...+.++++-...+      ...+-..+.+......+.++..+++++....     |+... ++-.-|.
T Consensus        40 afRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak  119 (308)
T KOG1585|consen   40 AFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAK  119 (308)
T ss_pred             HHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence            3456678899999998888554333      3355666677778889999999999998764     44433 3444455


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhhcccccC
Q psy12719         71 LMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        71 ~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a  116 (116)
                      + +. ..++++|++.|++++.+...+      .+.+-..++++.....+++|
T Consensus       120 ~-le-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea  169 (308)
T KOG1585|consen  120 A-LE-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA  169 (308)
T ss_pred             H-hh-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence            4 66 789999999999998874432      34455666677776666553

>KOG3824|consensus

Probab=98.10  E-value=1.3e-05  Score=48.13  Aligned_cols=67  Identities=13%  Similarity=0.232  Sum_probs=61.3

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML   71 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   71 (116)
                      ...|+.++|...|+.++++.|.+++++..+|......++.-+|-.+|-+++.++|.+..++.+....
T Consensus       127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            4578999999999999999999999999999999889999999999999999999998888776543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=98.08  E-value=8.1e-05  Score=33.09  Aligned_cols=35  Identities=14%  Similarity=0.099  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q psy12719         65 YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY  100 (116)
Q Consensus        65 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  100 (116)
                      ++.++..+++ .|+|++|.+..+.+++..|++..+.
T Consensus         4 lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    4 LYYLAIGHYK-LGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             HHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            3444444444 4555555555555555555544433

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=98.07  E-value=0.00019  Score=35.61  Aligned_cols=49  Identities=14%  Similarity=0.258  Sum_probs=39.4

Q ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC
Q psy12719         13 SLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN   61 (116)
Q Consensus        13 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~   61 (116)
                      .+..+++.++.+|++.++.+.+|..+...|++++|++.+-.+++.++..
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            3566788888999999999999999999999999999999999888765

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=98.06  E-value=4.6e-05  Score=33.87  Aligned_cols=43  Identities=12%  Similarity=0.299  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHH
Q psy12719         29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML   71 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   71 (116)
                      +..+.+|..+.+.|+|++|..+.+.++++.|++..+......+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            4567889999999999999999999999999998876655444

>KOG1070|consensus

Probab=98.06  E-value=0.00021  Score=50.48  Aligned_cols=86  Identities=12%  Similarity=0.132  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHH
Q psy12719         29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS--CMFAYETLGTI  106 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~  106 (116)
                      .++..+..+|...+.+++|.++++..++...+....|...+..+++ .++-+.|...+.+|++.-|.  +.......+.+
T Consensus      1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~-~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR-QNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc-ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence            3566677788888899999999999998888888999999999877 78889999999999999887  57777888888


Q ss_pred             HHhhccccc
Q psy12719        107 EVQRTFVVL  115 (116)
Q Consensus       107 ~~~~~~~~~  115 (116)
                      .++.|+.+.
T Consensus      1610 EFk~GDaeR 1618 (1710)
T KOG1070|consen 1610 EFKYGDAER 1618 (1710)
T ss_pred             HhhcCCchh
Confidence            888888764

>smart00028 TPR Tetratricopeptide repeats

Probab=98.04  E-value=1.6e-05  Score=30.73  Aligned_cols=31  Identities=26%  Similarity=0.559  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHhhcChhhHHHHHHHHhccCCC
Q psy12719         30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE   60 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~   60 (116)
                      ++..+|.++...+++++|...++++++..|.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4555666666666666666666666655553

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.01  E-value=0.00026  Score=39.83  Aligned_cols=90  Identities=19%  Similarity=0.194  Sum_probs=66.9

Q ss_pred             cchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE   81 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (116)
                      .+.+++++|+..++.++....+.   +.+-.+++.+...+|.+++|...+......+ -.+..-...|.++.. .|+-++
T Consensus       100 ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~-kg~k~~  177 (207)
T COG2976         100 VEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLA-KGDKQE  177 (207)
T ss_pred             HhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHH-cCchHH
Confidence            45688899999999888655443   3466788999999999999998887533221 112335567999877 899999


Q ss_pred             HHHHHHHHHhcCCCc
Q psy12719         82 AIKLIEKAISIDKSC   96 (116)
Q Consensus        82 a~~~~~~~~~~~~~~   96 (116)
                      |...|.+++..+++.
T Consensus       178 Ar~ay~kAl~~~~s~  192 (207)
T COG2976         178 ARAAYEKALESDASP  192 (207)
T ss_pred             HHHHHHHHHHccCCh
Confidence            999999999987554

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=98.00  E-value=2.8e-05  Score=46.74  Aligned_cols=89  Identities=10%  Similarity=0.172  Sum_probs=73.5

Q ss_pred             HHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719         17 FRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC   96 (116)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   96 (116)
                      |.++-...|+++..|...+......+.+.+....|.+++..+|.++..|..-+..-+...++.+.+...+.+++..+|+.
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            33444556888899999988888899999999999999999999999998755544555799999999999999999999


Q ss_pred             HHHHHHHHH
Q psy12719         97 MFAYETLGT  105 (116)
Q Consensus        97 ~~~~~~l~~  105 (116)
                      |..|...-+
T Consensus       176 p~iw~eyfr  184 (435)
T COG5191         176 PRIWIEYFR  184 (435)
T ss_pred             chHHHHHHH
Confidence            888775433

>KOG0545|consensus

Probab=98.00  E-value=7.9e-05  Score=43.49  Aligned_cols=81  Identities=11%  Similarity=0.131  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHhcc--------CCCC----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12719         29 EACTLFAQVLVDQEDFDGAEEYFNRSIRV--------DPEN----------ASLYVHRAMLMLQARGNVDEAIKLIEKAI   90 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   90 (116)
                      .+.-.-|+-++..|+|.+|...|+.|+-.        .|-.          ...+.+.+.|++. .|+|=++++.....+
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~-~~e~yevleh~seiL  257 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK-KEEYYEVLEHCSEIL  257 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh-HHHHHHHHHHHHHHH
Confidence            46678899999999999999999888632        3433          3468899999888 799999999999999


Q ss_pred             hcCCCcHHHHHHHHHHHHhh
Q psy12719         91 SIDKSCMFAYETLGTIEVQR  110 (116)
Q Consensus        91 ~~~~~~~~~~~~l~~~~~~~  110 (116)
                      ...|++..+++..|.+....
T Consensus       258 ~~~~~nvKA~frRakAhaa~  277 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAV  277 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhh
Confidence            99999999999998887654

>KOG2053|consensus

Probab=97.99  E-value=0.00018  Score=48.52  Aligned_cols=102  Identities=13%  Similarity=0.096  Sum_probs=82.7

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      ..++|..++|..+++..-...+++...+-.+-.+|...+++++|..+|++++..+|. ....+.+-.+|.+ .++|.+-.
T Consensus        53 l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR-~~~yk~qQ  130 (932)
T KOG2053|consen   53 LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR-EKSYKKQQ  130 (932)
T ss_pred             HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH-HHHHHHHH
Confidence            457889999998888777777777778888999999999999999999999999999 8888888888777 78888777


Q ss_pred             HHHHHHHhcCCCcHHH-HHHHHHHH
Q psy12719         84 KLIEKAISIDKSCMFA-YETLGTIE  107 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~-~~~l~~~~  107 (116)
                      +.--+..+..|+.+.. |..+..+.
T Consensus       131 kaa~~LyK~~pk~~yyfWsV~Slil  155 (932)
T KOG2053|consen  131 KAALQLYKNFPKRAYYFWSVISLIL  155 (932)
T ss_pred             HHHHHHHHhCCcccchHHHHHHHHH
Confidence            7777777788887643 33444333

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.93  E-value=0.00029  Score=34.96  Aligned_cols=65  Identities=15%  Similarity=0.120  Sum_probs=49.2

Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHhhcc
Q psy12719         47 AEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC--MFAYETLGTIEVQRTF  112 (116)
Q Consensus        47 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~  112 (116)
                      .+..+++.+..+|++..+.+.++..+.. .|++++|++.+..++..++++  ..+...+-.++...|.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            4567888999999999999999999888 899999999999999998765  4455555555554443

>PRK10941 hypothetical protein; Provisional

Probab=97.92  E-value=0.00012  Score=43.41  Aligned_cols=69  Identities=10%  Similarity=0.006  Sum_probs=61.7

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML   71 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   71 (116)
                      .+.+.++++.|+.+.+..+...|+++.-+...|.+|.+.|.+..|...++.-++..|+.+.+-.....+
T Consensus       190 ~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        190 ALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            356788999999999999999999999999999999999999999999999999999998876554443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.91  E-value=2.9e-05  Score=44.71  Aligned_cols=58  Identities=12%  Similarity=0.257  Sum_probs=45.5

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN   61 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~   61 (116)
                      ..+.++.+.+.+.+.+++...|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            3456777788888888888888888888888888888888888888888888888765

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.90  E-value=0.00043  Score=44.18  Aligned_cols=96  Identities=16%  Similarity=0.296  Sum_probs=61.9

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCC--hhHHHHHHHHHHHhhcChhhHHHHHHHHhcc-CCCCHHHHHHHHHHHHHhcCC-
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-DPENASLYVHRAMLMLQARGN-   78 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~-   78 (116)
                      +..+.|+.++|++.+...++.+|.  +..++.++..++...+.+.++...+.+--++ -|+++...+..+..-.+..++ 
T Consensus       268 CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~  347 (539)
T PF04184_consen  268 CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDK  347 (539)
T ss_pred             HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccc
Confidence            345677888888888888877765  3557777888888888888888777775333 255555555555443332222 


Q ss_pred             --------------HHHHHHHHHHHHhcCCCcHH
Q psy12719         79 --------------VDEAIKLIEKAISIDKSCMF   98 (116)
Q Consensus        79 --------------~~~a~~~~~~~~~~~~~~~~   98 (116)
                                    -..|.+.+.++++.+|..+.
T Consensus       348 fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~  381 (539)
T PF04184_consen  348 FSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK  381 (539)
T ss_pred             cCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence                          12356777888887776554

The molecular function of this protein is uncertain.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.89  E-value=0.00081  Score=36.79  Aligned_cols=84  Identities=19%  Similarity=0.150  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719         30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ  109 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (116)
                      .+.....+-...++.+++...+...-.+.|..+..-..-|..+.. .|++.+|+..++......|..+.+.-.++.|+..
T Consensus        12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            445555566678899999999999999999999999999999988 8999999999999999999999999999999998


Q ss_pred             hcccc
Q psy12719        110 RTFVV  114 (116)
Q Consensus       110 ~~~~~  114 (116)
                      +|+++
T Consensus        91 ~~D~~   95 (160)
T PF09613_consen   91 LGDPS   95 (160)
T ss_pred             cCChH
Confidence            88764

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.88  E-value=0.00035  Score=35.75  Aligned_cols=88  Identities=17%  Similarity=0.234  Sum_probs=68.3

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChh---HHHHHHHHHHHhhcC-----------hhhHHHHHHHHhccCCCCHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVV---EACTLFAQVLVDQED-----------FDGAEEYFNRSIRVDPENASLYVHRA   69 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----------~~~A~~~~~~a~~~~~~~~~~~~~~~   69 (116)
                      +...|++-+|+++.+..+...+++.   ..+...|.++.....           .-.+++++.++..+.|..+..++.+|
T Consensus         6 ~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la   85 (111)
T PF04781_consen    6 YFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELA   85 (111)
T ss_pred             HHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHH
Confidence            4578999999999999999887775   455666777764332           34678899999999999988888888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         70 MLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        70 ~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      .- +....-|+++..-.++++..
T Consensus        86 ~~-l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   86 SQ-LGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HH-hhhHHHHHHHHHHHHHHhcc
Confidence            86 33356788888888887765

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.88  E-value=5.2e-05  Score=43.72  Aligned_cols=59  Identities=22%  Similarity=0.365  Sum_probs=54.5

Q ss_pred             HHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719         37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC   96 (116)
Q Consensus        37 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   96 (116)
                      .....++.+.+.+.|.+++...|+....|+.+|....+ .|+++.|...|++.++++|.+
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ek-ag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEK-AGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhh-cccHHHHHHHHHHHHcCCccc
Confidence            44578899999999999999999999999999999777 899999999999999999976

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.85  E-value=6e-05  Score=30.66  Aligned_cols=28  Identities=21%  Similarity=0.379  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         64 LYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      ++.++|.++.. .|++++|++++++++.+
T Consensus         1 al~~Lg~~~~~-~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQ-QGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence            47889999887 99999999999996654

>KOG4340|consensus

Probab=97.84  E-value=0.00019  Score=43.26  Aligned_cols=106  Identities=9%  Similarity=0.097  Sum_probs=85.3

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      ...+|.++++++.--.+..|.+.-.+..+|.+|+...+|..|..+|++.....|......+..+..+++ .+.+..|...
T Consensus        22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-A~i~ADALrV  100 (459)
T KOG4340|consen   22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-ACIYADALRV  100 (459)
T ss_pred             HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hcccHHHHHH
Confidence            456789999999999999998888899999999999999999999999999999999988888998888 8999999988


Q ss_pred             HHHHHhcCCC-cHHHHHHHHHHHHhhccc
Q psy12719         86 IEKAISIDKS-CMFAYETLGTIEVQRTFV  113 (116)
Q Consensus        86 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  113 (116)
                      ....... |. ...+...-+-+..+.+++
T Consensus       101 ~~~~~D~-~~L~~~~lqLqaAIkYse~Dl  128 (459)
T KOG4340|consen  101 AFLLLDN-PALHSRVLQLQAAIKYSEGDL  128 (459)
T ss_pred             HHHhcCC-HHHHHHHHHHHHHHhcccccC
Confidence            8766543 22 123344444455555544

>smart00028 TPR Tetratricopeptide repeats

Probab=97.82  E-value=6.7e-05  Score=28.87  Aligned_cols=32  Identities=28%  Similarity=0.405  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12719         63 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS   95 (116)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   95 (116)
                      .+++.+|.++.. .+++++|+..+.++++..|+
T Consensus         2 ~~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLK-LGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCC
Confidence            467899999887 89999999999999998875

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=97.82  E-value=0.0011  Score=35.89  Aligned_cols=73  Identities=10%  Similarity=0.078  Sum_probs=58.6

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD   80 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (116)
                      ..+.+++...+...--+.|+.+.+-..-|.++...|+|.+|+..++......+..+...-.++.|++. +|+.+
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a-l~Dp~   95 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA-KGDAE   95 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh-cCChH
Confidence            45677777777777777888888888888888889999999999988888888888888888888665 77765

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=97.81  E-value=0.00063  Score=36.71  Aligned_cols=80  Identities=16%  Similarity=0.164  Sum_probs=69.9

Q ss_pred             HHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccc
Q psy12719         34 FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFV  113 (116)
Q Consensus        34 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  113 (116)
                      ....-...++++++...+...-.+.|+.+..-..-|..+.. .|++++|+..++...+-.+..+...-.++.|+..+||.
T Consensus        16 ~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~-rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        16 VLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA-RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHH-cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence            33344458999999999999989999999999999999888 89999999999999998888888888999999888876


Q ss_pred             c
Q psy12719        114 V  114 (116)
Q Consensus       114 ~  114 (116)
                      +
T Consensus        95 ~   95 (153)
T TIGR02561        95 E   95 (153)
T ss_pred             H
Confidence            4

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.80  E-value=0.0016  Score=37.53  Aligned_cols=99  Identities=17%  Similarity=0.220  Sum_probs=67.9

Q ss_pred             chhcHHHHHHHHHHHHhhC-----CCh--hHHHHHHHHHHHhhcChh-------hHHHHHHHHhccCCC------CHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTH-----SNV--VEACTLFAQVLVDQEDFD-------GAEEYFNRSIRVDPE------NASLY   65 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~-------~A~~~~~~a~~~~~~------~~~~~   65 (116)
                      ....+++|++.|.-++-..     +..  +..+..+|.+|...++.+       .|...|.+++.....      ...+.
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            3456788888877776432     122  557888999999888844       555666666654322      25678


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH-HHHHHHHH
Q psy12719         66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCM-FAYETLGT  105 (116)
Q Consensus        66 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~  105 (116)
                      +.+|.+..+ .|++++|.+++.+++.....+. .....+++
T Consensus       169 YLigeL~rr-lg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  169 YLIGELNRR-LGNYDEAKRWFSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HHHHHHHHH-hCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            899999777 9999999999999998644332 34444443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.78  E-value=0.0025  Score=39.03  Aligned_cols=90  Identities=10%  Similarity=0.041  Sum_probs=68.8

Q ss_pred             HHHHHHHhhCCChhHHHHHHHHHHHhhcC------------hhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719         15 KEFRNFVDTHSNVVEACTLFAQVLVDQED------------FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      ..+++.++.+|.+.+.|..+...--..-.            .+.-+..+++|++.+|.+...+..+-....+ ..+.++.
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~-~~~~~~l   84 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK-VWDSEKL   84 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHH
Confidence            45788889999999999888765443221            3456778899999999988887776666455 6788888


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHH
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGT  105 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~  105 (116)
                      .+-+++++..+|+++.+|...-.
T Consensus        85 ~~~we~~l~~~~~~~~LW~~yL~  107 (321)
T PF08424_consen   85 AKKWEELLFKNPGSPELWREYLD  107 (321)
T ss_pred             HHHHHHHHHHCCCChHHHHHHHH
Confidence            89999999999998877765433

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.72  E-value=0.0005  Score=44.07  Aligned_cols=87  Identities=21%  Similarity=0.242  Sum_probs=67.1

Q ss_pred             cchhcHHHHHHHHHHHHhhCCCh----hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHH-HHHHHHHHHHHhcCCH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNV----VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS-LYVHRAMLMLQARGNV   79 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~   79 (116)
                      ...|+.++|++.+++++.....-    .-.++.++.++..+++|++|..++.+..+.+.-+.. ..|..|.++.. .++.
T Consensus       278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~-l~~~  356 (468)
T PF10300_consen  278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM-LGRE  356 (468)
T ss_pred             HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hccc
Confidence            45789999999999988533222    336788999999999999999999999987654433 45566777666 8888


Q ss_pred             -------HHHHHHHHHHHhc
Q psy12719         80 -------DEAIKLIEKAISI   92 (116)
Q Consensus        80 -------~~a~~~~~~~~~~   92 (116)
                             ++|.+.+.++-..
T Consensus       357 ~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  357 EEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             hhhhhhHHHHHHHHHHHHHH
Confidence                   8888888777654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.70  E-value=0.0039  Score=38.88  Aligned_cols=55  Identities=16%  Similarity=0.354  Sum_probs=43.9

Q ss_pred             chhcHHHHHHHHHHH-HhhCCChhHHHHHHHHHHHh---------hcChhhHHHHHHHHhccCCC
Q psy12719          6 DRERVEQSLKEFRNF-VDTHSNVVEACTLFAQVLVD---------QEDFDGAEEYFNRSIRVDPE   60 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~a~~~~~~   60 (116)
                      +.|+.++|++.+..+ ....+.+++++...|.+|..         ....++|+.+|.++...+|+
T Consensus       194 ~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~  258 (374)
T PF13281_consen  194 KPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD  258 (374)
T ss_pred             cCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence            478999999999994 45556778899999998863         23478999999999988865

>KOG3364|consensus

Probab=97.66  E-value=0.002  Score=34.35  Aligned_cols=79  Identities=16%  Similarity=0.158  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHHHhh---cChhhHHHHHHHHhc-cCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q psy12719         28 VEACTLFAQVLVDQ---EDFDGAEEYFNRSIR-VDPE-NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET  102 (116)
Q Consensus        28 ~~~~~~~~~~~~~~---~~~~~A~~~~~~a~~-~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  102 (116)
                      ....++++.++.+.   .+.++.+..+...++ ..|. .....+.++..+++ .++|+.+..++...++..|++..+...
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR-lkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR-LKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH-HhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            45677888887754   456788889998886 4453 35578888888888 899999999999999999999877655


Q ss_pred             HHHHH
Q psy12719        103 LGTIE  107 (116)
Q Consensus       103 l~~~~  107 (116)
                      --.+.
T Consensus       111 k~~ie  115 (149)
T KOG3364|consen  111 KETIE  115 (149)
T ss_pred             HHHHH
Confidence            44443

>KOG1310|consensus

Probab=97.62  E-value=0.0012  Score=42.82  Aligned_cols=88  Identities=11%  Similarity=-0.019  Sum_probs=75.9

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHh---hcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD---QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      +.+..++..|.+++...|.....+.+.+.++++   .|+.-.|+..+..+++++|....+|+.++.++.. ++++.+|++
T Consensus       388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e-l~r~~eal~  466 (758)
T KOG1310|consen  388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE-LTRYLEALS  466 (758)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH-HhhHHHhhh
Confidence            456788899999999999988888888888876   4567788888899999999999999999999776 999999999


Q ss_pred             HHHHHHhcCCCc
Q psy12719         85 LIEKAISIDKSC   96 (116)
Q Consensus        85 ~~~~~~~~~~~~   96 (116)
                      ....+...+|.+
T Consensus       467 ~~~alq~~~Ptd  478 (758)
T KOG1310|consen  467 CHWALQMSFPTD  478 (758)
T ss_pred             hHHHHhhcCchh
Confidence            998888788854

>KOG1586|consensus

Probab=97.61  E-value=0.0013  Score=38.33  Aligned_cols=56  Identities=16%  Similarity=0.160  Sum_probs=39.2

Q ss_pred             hhcChhhHHHHHHHHhccCCCCHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12719         40 DQEDFDGAEEYFNRSIRVDPENAS------LYVHRAMLMLQARGNVDEAIKLIEKAISIDKS   95 (116)
Q Consensus        40 ~~~~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   95 (116)
                      +..+..+|+.++++++.+..+-..      .+..+|.+|-..+.++++|+..|+.+-+...+
T Consensus        85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~  146 (288)
T KOG1586|consen   85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG  146 (288)
T ss_pred             hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence            455777888888888877654433      34477887666567888888888888776443

>KOG1586|consensus

Probab=97.61  E-value=0.0021  Score=37.52  Aligned_cols=90  Identities=11%  Similarity=0.127  Sum_probs=64.9

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHH------HHHHHHHHHh-hcChhhHHHHHHHHhccCCCC------HHHHHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEA------CTLFAQVLVD-QEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLM   72 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~   72 (116)
                      +..+.++|+.++++++.+..+-.+.      +..+|.+|.. ..+++.|+.+|+++-......      -..+...+..-
T Consensus        85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya  164 (288)
T KOG1586|consen   85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA  164 (288)
T ss_pred             hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence            4557888999999999887665443      4478888764 489999999999987654322      22455555543


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719         73 LQARGNVDEAIKLIEKAISIDKSC   96 (116)
Q Consensus        73 ~~~~~~~~~a~~~~~~~~~~~~~~   96 (116)
                      -. .++|.+|+..|++.....-++
T Consensus       165 a~-leqY~~Ai~iyeqva~~s~~n  187 (288)
T KOG1586|consen  165 AQ-LEQYSKAIDIYEQVARSSLDN  187 (288)
T ss_pred             HH-HHHHHHHHHHHHHHHHHhccc
Confidence            44 799999999999988765554

>KOG3364|consensus

Probab=97.54  E-value=0.00059  Score=36.24  Aligned_cols=66  Identities=14%  Similarity=0.254  Sum_probs=53.5

Q ss_pred             cchhcHHHHHHHHHHHHh-hCCCh-hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVD-THSNV-VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM   70 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   70 (116)
                      .+..+-.+.+.+++..++ ..|.. -+..+.++.-+.+.++|+.++.+.+..++..|++.++....-.
T Consensus        46 ~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~  113 (149)
T KOG3364|consen   46 RDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET  113 (149)
T ss_pred             cchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            345677888999999996 45544 4577888999999999999999999999999999887654433

>KOG1258|consensus

Probab=97.50  E-value=0.0086  Score=39.19  Aligned_cols=109  Identities=12%  Similarity=0.058  Sum_probs=87.3

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC-CCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-PENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      ...|+++...-.|++++--+.....+|..++......|+.+-|...+.++.++. |..+.+...-+.. ....|+++.|.
T Consensus       308 i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f-~e~~~n~~~A~  386 (577)
T KOG1258|consen  308 ITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF-EESNGNFDDAK  386 (577)
T ss_pred             hhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH-HHhhccHHHHH
Confidence            356888999999999998888889999999999999999999999999988875 4555555555555 34479999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      ..+++..+.-|+...+-..-..+....|+.+
T Consensus       387 ~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~  417 (577)
T KOG1258|consen  387 VILQRIESEYPGLVEVVLRKINWERRKGNLE  417 (577)
T ss_pred             HHHHHHHhhCCchhhhHHHHHhHHHHhcchh
Confidence            9999999888988776666666666666554

>KOG2396|consensus

Probab=97.48  E-value=0.00085  Score=42.91  Aligned_cols=62  Identities=18%  Similarity=0.243  Sum_probs=53.5

Q ss_pred             cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcC-hhhHHHHHHHHhccCCCCHHHHHHHHH
Q psy12719          9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED-FDGAEEYFNRSIRVDPENASLYVHRAM   70 (116)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~   70 (116)
                      .+.+.-.+|.+++..+|++++.|..-|...+.-+. .+.|...+.++++.+|+++..|...-.
T Consensus       120 ~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  120 TYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR  182 (568)
T ss_pred             chhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence            37788889999999999999999999888776665 999999999999999999987764433

>KOG4814|consensus

Probab=97.46  E-value=0.0019  Score=42.74  Aligned_cols=64  Identities=16%  Similarity=0.236  Sum_probs=32.1

Q ss_pred             HHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12719         34 FAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF   98 (116)
Q Consensus        34 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   98 (116)
                      -|.-+++..+|..++++|...++..|.+      ......+..||+. +.+.+.|.+.++++-+.+|.++-
T Consensus       360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~-L~QLD~A~E~~~EAE~~d~~~~l  429 (872)
T KOG4814|consen  360 TAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK-LEQLDNAVEVYQEAEEVDRQSPL  429 (872)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhccccHH
Confidence            3444445555555555555555444332      2334445555554 55555555555555555555443

>KOG2047|consensus

Probab=97.45  E-value=0.0057  Score=40.67  Aligned_cols=51  Identities=14%  Similarity=0.268  Sum_probs=23.4

Q ss_pred             cchhcHHHHHHHHHHHHhhCCC----hhHHHHHHHHHHHhhcChhhHHHHHHHHh
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSN----VVEACTLFAQVLVDQEDFDGAEEYFNRSI   55 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~   55 (116)
                      ...|+.+.|..+|+++.+..-.    -..+|+.-|..-.+..+++.|..+.+++.
T Consensus       398 e~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~  452 (835)
T KOG2047|consen  398 ENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT  452 (835)
T ss_pred             HhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence            3344445555555555444311    13344444444444455555555444443

>KOG4814|consensus

Probab=97.44  E-value=0.004  Score=41.30  Aligned_cols=87  Identities=15%  Similarity=0.134  Sum_probs=71.8

Q ss_pred             cchhcHHHHHHHHHHHHhhCCCh------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCC
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN   78 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   78 (116)
                      .+..+|..+++.|...+..-|.+      ......++.+|....+.+.|.+++..|-+.+|+++-.-......... .+.
T Consensus       365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~-E~~  443 (872)
T KOG4814|consen  365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA-EDK  443 (872)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH-hcc
Confidence            45678999999999999887765      34567788999999999999999999999999998776666666455 788


Q ss_pred             HHHHHHHHHHHHhc
Q psy12719         79 VDEAIKLIEKAISI   92 (116)
Q Consensus        79 ~~~a~~~~~~~~~~   92 (116)
                      -++|...+......
T Consensus       444 Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  444 SEEALTCLQKIKSS  457 (872)
T ss_pred             hHHHHHHHHHHHhh
Confidence            89998888776654

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=0.0044  Score=36.80  Aligned_cols=74  Identities=14%  Similarity=0.088  Sum_probs=63.4

Q ss_pred             HHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy12719         31 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGT  105 (116)
Q Consensus        31 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~  105 (116)
                      ..++=..+...++++.|..+..+.+..+|.++.-+.-.|.+|.+ .|.+..|++.+...++..|+++.+-.....
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            33444567789999999999999999999999999999999888 999999999999999999998766544433

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.41  E-value=0.0025  Score=32.71  Aligned_cols=74  Identities=12%  Similarity=0.092  Sum_probs=56.5

Q ss_pred             HHHHHHhhcChhhHHHHHHHHhccCCCCH---HHHHHHHHHHHHh---cCC-------HHHHHHHHHHHHhcCCCcHHHH
Q psy12719         34 FAQVLVDQEDFDGAEEYFNRSIRVDPENA---SLYVHRAMLMLQA---RGN-------VDEAIKLIEKAISIDKSCMFAY  100 (116)
Q Consensus        34 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~---~~~-------~~~a~~~~~~~~~~~~~~~~~~  100 (116)
                      .+.-++..|++-+|++..+..+...+++.   ..+..-|.+++..   ..+       .-.+++++.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            35678899999999999999999888765   4555667775441   122       4467888899999999998888


Q ss_pred             HHHHHHH
Q psy12719        101 ETLGTIE  107 (116)
Q Consensus       101 ~~l~~~~  107 (116)
                      +.+|.-+
T Consensus        82 ~~la~~l   88 (111)
T PF04781_consen   82 FELASQL   88 (111)
T ss_pred             HHHHHHh
Confidence            8887753

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=97.38  E-value=0.0029  Score=37.63  Aligned_cols=61  Identities=18%  Similarity=0.064  Sum_probs=50.1

Q ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHH
Q psy12719         13 SLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML   73 (116)
Q Consensus        13 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   73 (116)
                      |+.+|.+|+...|+++..+..+|.++...|+.-.|+-+|-+++-.....+.+..++....-
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~   61 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFE   61 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999988766556778888877743

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.37  E-value=0.0078  Score=34.17  Aligned_cols=84  Identities=20%  Similarity=0.196  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHH
Q psy12719         30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-MFAYETLGT  105 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~  105 (116)
                      +.+.++..+...+++++|...++.++....+.   .-+-.+++.+.+. +|.+++|...+.....  ++. +..-...|.
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q-~~k~D~AL~~L~t~~~--~~w~~~~~elrGD  167 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ-QKKADAALKTLDTIKE--ESWAAIVAELRGD  167 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHhcccc--ccHHHHHHHHhhh
Confidence            45667888889999999999999998665544   3456788999888 8999999988864422  222 334556788


Q ss_pred             HHHhhcccccC
Q psy12719        106 IEVQRTFVVLW  116 (116)
Q Consensus       106 ~~~~~~~~~~a  116 (116)
                      ++...|+.++|
T Consensus       168 ill~kg~k~~A  178 (207)
T COG2976         168 ILLAKGDKQEA  178 (207)
T ss_pred             HHHHcCchHHH
Confidence            88888776543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.37  E-value=0.00054  Score=28.40  Aligned_cols=27  Identities=19%  Similarity=0.257  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHhhcChhhHHHHHHHHhc
Q psy12719         30 ACTLFAQVLVDQEDFDGAEEYFNRSIR   56 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~   56 (116)
                      ++..+|.++..+|++++|..++++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            344555555555555555555555543

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=97.35  E-value=0.003  Score=37.56  Aligned_cols=62  Identities=24%  Similarity=0.345  Sum_probs=51.8

Q ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719         47 AEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ  109 (116)
Q Consensus        47 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (116)
                      |+.+|.+|+.+.|.+...+..+|.++.. .|+.-.|+-+|-+++......+.+..++......
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~-~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASY-QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHH-TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhcc-ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            6789999999999999999999999877 8999999999999998765567788888887766

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG2610|consensus

Probab=97.31  E-value=0.0046  Score=38.12  Aligned_cols=83  Identities=12%  Similarity=0.129  Sum_probs=57.0

Q ss_pred             cchhcHHHHHHHHHHHHhh-CCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHH
Q psy12719          5 GDRERVEQSLKEFRNFVDT-HSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD   80 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (116)
                      ...|+.......+++.+.. +|+.   .-+...++..+...|-|++|.+..+++++++|.+..+....+-++-. .+++.
T Consensus       148 fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem-~~r~K  226 (491)
T KOG2610|consen  148 FYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEM-NGRHK  226 (491)
T ss_pred             HhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHh-cchhh
Confidence            3456666667777777765 4444   44566677777788888888888888888888877776666666433 56666


Q ss_pred             HHHHHHHH
Q psy12719         81 EAIKLIEK   88 (116)
Q Consensus        81 ~a~~~~~~   88 (116)
                      ++.+...+
T Consensus       227 eg~eFM~~  234 (491)
T KOG2610|consen  227 EGKEFMYK  234 (491)
T ss_pred             hHHHHHHh
Confidence            66655543

>KOG1550|consensus

Probab=97.30  E-value=0.011  Score=39.05  Aligned_cols=100  Identities=10%  Similarity=0.110  Sum_probs=60.5

Q ss_pred             chhcHHHHHHHHHHHHhh-----CCChhHHHHHHHHHHHhhc-----ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q psy12719          6 DRERVEQSLKEFRNFVDT-----HSNVVEACTLFAQVLVDQE-----DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA   75 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   75 (116)
                      ...+.+.|+.+++.+...     ....+.+...+|.+|....     +...|..+|.++-...  ++.+.+.+|.++...
T Consensus       261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g  338 (552)
T KOG1550|consen  261 VTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETG  338 (552)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcC
Confidence            456777778877777661     0113445667777776632     5566777777776653  445566777775543


Q ss_pred             c--CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719         76 R--GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ  109 (116)
Q Consensus        76 ~--~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (116)
                      .  .++.+|.++|..+...  .+..+.+.++.++..
T Consensus       339 ~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~  372 (552)
T KOG1550|consen  339 TKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL  372 (552)
T ss_pred             CccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence            3  3466777777766543  344456666666543

>KOG1914|consensus

Probab=97.28  E-value=0.0055  Score=39.88  Aligned_cols=73  Identities=12%  Similarity=0.191  Sum_probs=58.6

Q ss_pred             HHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         18 RNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      ++-++.+|.+.+.|..+-.-+..+ .+++.++.|++.....|.++.+|.......+. .++|+.-+..|.+++..
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~-skdfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELA-SKDFESVEKLFSRCLVK   82 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhhHHHHHHHHHHHHHH
Confidence            566778888888888887766555 88888888888888888888888888777777 78888888888888754

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=97.27  E-value=0.01  Score=33.31  Aligned_cols=64  Identities=19%  Similarity=0.143  Sum_probs=48.8

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      ..++..+|..|.+.|+.++|.+.|.++.......   ...++.+..+.+. .+++......+.++-..
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Confidence            3578889999999999999999999977765433   3455666666666 78998888888877654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1941|consensus

Probab=97.26  E-value=0.0035  Score=38.98  Aligned_cols=87  Identities=15%  Similarity=0.096  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------H
Q psy12719         29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-----ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------M   97 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~   97 (116)
                      .++.+++..+.+..++.+++.+....+.+....     ......++.+++. ++.++++.+.|+.++....++      -
T Consensus        84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlg-ls~fq~~Lesfe~A~~~A~~~~D~~LEl  162 (518)
T KOG1941|consen   84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLG-LSVFQKALESFEKALRYAHNNDDAMLEL  162 (518)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhh-HHHHHHHHHHHHHHHHHhhccCCceeee
Confidence            466777777777888888888877776654322     3466778888777 889999999999998764322      2


Q ss_pred             HHHHHHHHHHHhhcccccC
Q psy12719         98 FAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        98 ~~~~~l~~~~~~~~~~~~a  116 (116)
                      .+...|+..+....|+++|
T Consensus       163 qvcv~Lgslf~~l~D~~Ka  181 (518)
T KOG1941|consen  163 QVCVSLGSLFAQLKDYEKA  181 (518)
T ss_pred             ehhhhHHHHHHHHHhhhHH
Confidence            4566788888887777764

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.023  Score=37.40  Aligned_cols=100  Identities=16%  Similarity=0.027  Sum_probs=72.4

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHH-HhccCCCCHHHHHHH------HHHHHHhcCC
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR-SIRVDPENASLYVHR------AMLMLQARGN   78 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~~------~~~~~~~~~~   78 (116)
                      ..++...+.-.+...+..+|.+..+..+++......|..-.+...+.. +....|++......+      +..... .++
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~  157 (620)
T COG3914          79 PLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL-LGR  157 (620)
T ss_pred             ccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHH-hcc
Confidence            445566677778888888898888888888887776666655555544 777888886655444      666444 789


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy12719         79 VDEAIKLIEKAISIDKSCMFAYETLGTI  106 (116)
Q Consensus        79 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~  106 (116)
                      ..++...+.++....|..+.+...+...
T Consensus       158 ~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         158 TAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            9999999999999888886655544444

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.24  E-value=0.0077  Score=31.53  Aligned_cols=86  Identities=15%  Similarity=0.191  Sum_probs=60.2

Q ss_pred             chhcHHHHHHHHHHHHhhCCC------------hhHHHHHHHHHHHhhcChhhHHHHHHHHhc-------cCCCCH----
Q psy12719          6 DRERVEQSLKEFRNFVDTHSN------------VVEACTLFAQVLVDQEDFDGAEEYFNRSIR-------VDPENA----   62 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-------~~~~~~----   62 (116)
                      ..|.|++|...+.++++....            +..++-.++..+...|+|++++.....++.       ++.+..    
T Consensus        21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI  100 (144)
T PF12968_consen   21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI  100 (144)
T ss_dssp             HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence            346789999999999876522            123667788888899999988777666653       344443    


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         63 SLYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      .+.++.+..+-. .|+.++|...|+.+.+.
T Consensus       101 aaVfsra~Al~~-~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen  101 AAVFSRAVALEG-LGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-cCChHHHHHHHHHHHHH
Confidence            455678888555 99999999999988653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=97.13  E-value=0.0025  Score=26.29  Aligned_cols=30  Identities=33%  Similarity=0.419  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         62 ASLYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      ..++.++|.++.. .|++++|...+++++..
T Consensus         2 a~~~~~la~~~~~-~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRA-QGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence            3568899999887 89999999999999875

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=97.10  E-value=0.0092  Score=29.79  Aligned_cols=54  Identities=22%  Similarity=0.322  Sum_probs=35.3

Q ss_pred             HhhcChhhHHHHHHHHhccCCCC---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12719         39 VDQEDFDGAEEYFNRSIRVDPEN---------ASLYVHRAMLMLQARGNVDEAIKLIEKAISID   93 (116)
Q Consensus        39 ~~~~~~~~A~~~~~~a~~~~~~~---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   93 (116)
                      .+.+++.+|.+.+.+.+......         ..+..+++.++.. .|++++|...+++++.+.
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHH
Confidence            36677777766666655432211         2356677777666 788888888888887763

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=97.09  E-value=0.018  Score=32.92  Aligned_cols=70  Identities=16%  Similarity=0.087  Sum_probs=53.8

Q ss_pred             hhHHHHHHHHhccC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHhhcccccC
Q psy12719         45 DGAEEYFNRSIRVD-PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS----CMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        45 ~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.|...|-++-... -+++...+.+|..| . ..+.++++..+.+++++.+.    +++++..|+.++..+|+++.|
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYY-T-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-H-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            45666665543322 25678888888874 4 69999999999999998543    488999999999999998875

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=97.09  E-value=0.0028  Score=25.79  Aligned_cols=30  Identities=13%  Similarity=0.129  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHhhcChhhHHHH--HHHHhccCC
Q psy12719         30 ACTLFAQVLVDQEDFDGAEEY--FNRSIRVDP   59 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~A~~~--~~~a~~~~~   59 (116)
                      .+..+|..+..+|++++|+..  |+-+..++|
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            455566666666666666666  335444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG0530|consensus

Probab=97.07  E-value=0.023  Score=33.92  Aligned_cols=105  Identities=12%  Similarity=0.140  Sum_probs=76.6

Q ss_pred             cHHHHHHHHHHHHhhCCChhHHHHHHHHHHH-hhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHH-HHHHHH
Q psy12719          9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLV-DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD-EAIKLI   86 (116)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~   86 (116)
                      .-..|+...+.++..+|.+-.+|...-.+.. -..+..+-++++...+..+|.+-.+|..+-.+.-. .|++. .-.+..
T Consensus        58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~-l~d~s~rELef~  136 (318)
T KOG0530|consen   58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVEL-LGDPSFRELEFT  136 (318)
T ss_pred             cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHH-hcCcccchHHHH
Confidence            3456666777777777777666655544443 35567788889999999999999999888777444 78887 788888


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         87 EKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      +.++..+..+-.+|...-.+...-+.++
T Consensus       137 ~~~l~~DaKNYHaWshRqW~~r~F~~~~  164 (318)
T KOG0530|consen  137 KLMLDDDAKNYHAWSHRQWVLRFFKDYE  164 (318)
T ss_pred             HHHHhccccchhhhHHHHHHHHHHhhHH
Confidence            8898888877777777776666555543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.07  E-value=0.032  Score=35.32  Aligned_cols=48  Identities=13%  Similarity=0.057  Sum_probs=26.2

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR   53 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~   53 (116)
                      ..|+.+.|..+-+.+....|.-+.++...-...+..|+|+.|++..+.
T Consensus       166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~  213 (531)
T COG3898         166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDA  213 (531)
T ss_pred             hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence            345555555555555555555554444444444556666666655544

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.06  E-value=0.028  Score=34.58  Aligned_cols=106  Identities=13%  Similarity=0.172  Sum_probs=80.5

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCC----hhHHHHHHHHHHHhhcChhhHHHHHHHHhcc-CC-C-----------------
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSN----VVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-DP-E-----------------   60 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~-~-----------------   60 (116)
                      ..+.|.++.|...+.++....+.    .+.+....+.+....|+..+|+..++..+.. .. .                 
T Consensus       156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (352)
T PF02259_consen  156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESL  235 (352)
T ss_pred             HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccc
Confidence            35678899999999998876522    4667788899999999999999998887761 10 0                 


Q ss_pred             --------C-------HHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhh
Q psy12719         61 --------N-------ASLYVHRAMLMLQAR------GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR  110 (116)
Q Consensus        61 --------~-------~~~~~~~~~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  110 (116)
                              .       ..++..+|..... .      +..+++...|..+++.+|+...+|..+|..+...
T Consensus       236 ~~~~~~~~~~~~~~~~a~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  236 EVISSTNLDKESKELKAKAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             ccccccchhhhhHHHHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence                    0       2345556665434 5      8889999999999999999998999888876553

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2471|consensus

Probab=97.04  E-value=0.0053  Score=39.62  Aligned_cols=72  Identities=13%  Similarity=0.037  Sum_probs=60.9

Q ss_pred             cccchhcHHHHHHHHHHHHh-hC-----------------CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVD-TH-----------------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASL   64 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~-~~-----------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   64 (116)
                      ++.+.+.|.-+..+|.++++ .+                 ..+....++.|..+...|+.-.|.++|.++....-.+|..
T Consensus       292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrl  371 (696)
T KOG2471|consen  292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRL  371 (696)
T ss_pred             EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHH
Confidence            45678889999999999985 11                 1234578899999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy12719         65 YVHRAMLMLQ   74 (116)
Q Consensus        65 ~~~~~~~~~~   74 (116)
                      |..++.|...
T Consensus       372 WLRlAEcCim  381 (696)
T KOG2471|consen  372 WLRLAECCIM  381 (696)
T ss_pred             HHHHHHHHHH
Confidence            9999998654

>KOG3617|consensus

Probab=96.99  E-value=0.0095  Score=41.00  Aligned_cols=87  Identities=22%  Similarity=0.295  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHH----------hccCCCC----------HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12719         29 EACTLFAQVLVDQEDFDGAEEYFNRS----------IRVDPEN----------ASLYVHRAMLMLQARGNVDEAIKLIEK   88 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~A~~~~~~a----------~~~~~~~----------~~~~~~~~~~~~~~~~~~~~a~~~~~~   88 (116)
                      ..+++++.-+...++...|+++|+++          +..+|..          +..|..-|.. +...|+++.|+..|..
T Consensus       859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqY-lES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQY-LESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHH-HhcccchHHHHHHHHH
Confidence            36788899889999999999999885          2333432          3445555664 4458999999999988


Q ss_pred             HHhc---------------------CCCcHHHHHHHHHHHHhhcccccC
Q psy12719         89 AISI---------------------DKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        89 ~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +-..                     ...+..+-+.+|+.|...|++.+|
T Consensus       938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~A  986 (1416)
T KOG3617|consen  938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKA  986 (1416)
T ss_pred             hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHH
Confidence            7653                     223455677888888888877553

>KOG1310|consensus

Probab=96.98  E-value=0.0059  Score=39.79  Aligned_cols=86  Identities=19%  Similarity=0.110  Sum_probs=70.1

Q ss_pred             HHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719         31 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA--RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV  108 (116)
Q Consensus        31 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  108 (116)
                      ...-|.-.+..+....++..|.+++...|.....+.+.+.++.++  .|+.-.|+.....++.++|....+|+.|+.++.
T Consensus       377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~  456 (758)
T KOG1310|consen  377 FKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALN  456 (758)
T ss_pred             HHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHH
Confidence            333444444566778899999999999999999999988887653  467778888889999999999999999999999


Q ss_pred             hhcccccC
Q psy12719        109 QRTFVVLW  116 (116)
Q Consensus       109 ~~~~~~~a  116 (116)
                      ..+++.+|
T Consensus       457 el~r~~ea  464 (758)
T KOG1310|consen  457 ELTRYLEA  464 (758)
T ss_pred             HHhhHHHh
Confidence            99887664

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=96.97  E-value=0.0029  Score=31.57  Aligned_cols=55  Identities=13%  Similarity=0.152  Sum_probs=44.3

Q ss_pred             cchhcHHHHHHHHHHHHhhCCCh---------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCC
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNV---------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP   59 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~   59 (116)
                      .+.++|.+|++.+.+..+.....         ..+...+|.++...|++++|+..++.++++..
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            46789999988888887665322         34667889999999999999999999998754

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.94  E-value=0.033  Score=33.51  Aligned_cols=99  Identities=12%  Similarity=0.063  Sum_probs=67.9

Q ss_pred             hcHHHHHHHHHHHHhhCCCh-hHHHHHHHHHHHhhc-------ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhc---
Q psy12719          8 ERVEQSLKEFRNFVDTHSNV-VEACTLFAQVLVDQE-------DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR---   76 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---   76 (116)
                      .+..+|..+|.++....... ..+...+|..+..-.       +...|...|.++....  ++.+.+.+|.+|....   
T Consensus       127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~  204 (292)
T COG0790         127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVP  204 (292)
T ss_pred             cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCC
Confidence            37788888888888775443 344667777765531       2336788888777665  6777888888765432   


Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q psy12719         77 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRT  111 (116)
Q Consensus        77 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  111 (116)
                      .++.+|..+|.++.+...  ....+.++ ++...|
T Consensus       205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             cCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence            378899999998888766  66777777 444433

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.91  E-value=0.0028  Score=38.57  Aligned_cols=63  Identities=11%  Similarity=0.243  Sum_probs=52.7

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHH-HHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTL-FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA   69 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   69 (116)
                      .+.+.+.-.+|.+++..+|.+.+.|.. -+.-++..+++..++..+.++++.+|+++..|+..-
T Consensus       120 ~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf  183 (435)
T COG5191         120 KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF  183 (435)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence            356777788899999999999998876 344567899999999999999999999998876543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.90  E-value=0.026  Score=31.66  Aligned_cols=90  Identities=18%  Similarity=0.231  Sum_probs=67.1

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC--CHH----HHHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE--NAS----LYVHRAMLMLQ   74 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~----~~~~~~~~~~~   74 (116)
                      |.+.|+.+.|++.|.++...+...   .+.++.+-.+....+++.....+..++-.....  ++.    ....-|..++.
T Consensus        46 ~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~  125 (177)
T PF10602_consen   46 YCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLA  125 (177)
T ss_pred             HHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            567899999999999988876443   457778888888999999999999888654322  222    23334555555


Q ss_pred             hcCCHHHHHHHHHHHHhcCC
Q psy12719         75 ARGNVDEAIKLIEKAISIDK   94 (116)
Q Consensus        75 ~~~~~~~a~~~~~~~~~~~~   94 (116)
                       .++|..|.+.|..+..-..
T Consensus       126 -~r~f~~AA~~fl~~~~t~~  144 (177)
T PF10602_consen  126 -QRDFKEAAELFLDSLSTFT  144 (177)
T ss_pred             -hchHHHHHHHHHccCcCCC
Confidence             7999999999988876554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.88  E-value=0.038  Score=33.25  Aligned_cols=96  Identities=10%  Similarity=0.150  Sum_probs=67.0

Q ss_pred             ccchhcHHHHHHHHHHHHhhC----CCh----hHHHHHHHHHHHhhc-ChhhHHHHHHHHhcc----CC---CC------
Q psy12719          4 PGDRERVEQSLKEFRNFVDTH----SNV----VEACTLFAQVLVDQE-DFDGAEEYFNRSIRV----DP---EN------   61 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~----~~---~~------   61 (116)
                      ..++|+++.|..++.++-...    |+.    .+..++.|......+ +++.|..+++++.++    .+   ..      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            357899999999999986654    333    347788888888899 999999999999876    21   11      


Q ss_pred             -HHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCcHHHH
Q psy12719         62 -ASLYVHRAMLMLQARGNVD---EAIKLIEKAISIDKSCMFAY  100 (116)
Q Consensus        62 -~~~~~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~  100 (116)
                       ..++..++.+++. .+.++   +|...+..+-...|+.+.++
T Consensus        83 r~~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   83 RLSILRLLANAYLE-WDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             HHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence             2356677888776 45443   45555555555567766555

It is also involved in sporulation [].

>KOG0529|consensus

Probab=96.88  E-value=0.048  Score=34.45  Aligned_cols=100  Identities=16%  Similarity=0.179  Sum_probs=80.2

Q ss_pred             cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcC--hhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCC---HHHHH
Q psy12719          9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED--FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN---VDEAI   83 (116)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~   83 (116)
                      -.++-+.+...++..+|++-.+|.....++.+.+.  +..=+..+.++++.+|++-.+|..+-.+.-.....   ..+-+
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El  169 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL  169 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence            45677888899999999999999999999876553  67888999999999999988887665554443333   66778


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEV  108 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~  108 (116)
                      +...+++..++++-.+|.....+..
T Consensus       170 ~ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  170 EFTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHH
Confidence            8889999999999888888777665

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.85  E-value=0.057  Score=34.78  Aligned_cols=111  Identities=13%  Similarity=0.023  Sum_probs=79.0

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChh-----HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVV-----EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV   79 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   79 (116)
                      .+++++.+|.++|.+..+...+++     +++.++-...+-.++.+.........-+..|.++....-.|...++ .+.+
T Consensus        17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~-~k~~   95 (549)
T PF07079_consen   17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYK-QKEY   95 (549)
T ss_pred             HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-hhhH
Confidence            467899999999999988765553     3444444444567778877777777777888888888888888788 8999


Q ss_pred             HHHHHHHHHHHhcCCCc---------------HHHHHHHHHHHHhhcccccC
Q psy12719         80 DEAIKLIEKAISIDKSC---------------MFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .+|.+.+......-.+.               ...-...+.++...|++.++
T Consensus        96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~Eg  147 (549)
T PF07079_consen   96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEG  147 (549)
T ss_pred             HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchH
Confidence            99999987766542111               11122456777888887653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.82  E-value=0.052  Score=34.00  Aligned_cols=91  Identities=16%  Similarity=0.251  Sum_probs=64.1

Q ss_pred             hcHHHHHHHHHHHH------------hhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhcc--------------C---
Q psy12719          8 ERVEQSLKEFRNFV------------DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--------------D---   58 (116)
Q Consensus         8 ~~~~~A~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------------~---   58 (116)
                      ..|.++...|..++            ..+|-+.+++..++.++..+|+...|.+.+++|+=.              +   
T Consensus         8 ~~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~   87 (360)
T PF04910_consen    8 KAYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTS   87 (360)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence            44555555555444            455778889999999999999999999988887411              1   


Q ss_pred             ---------CCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cHHH
Q psy12719         59 ---------PENAS---LYVHRAMLMLQARGNVDEAIKLIEKAISIDKS-CMFA   99 (116)
Q Consensus        59 ---------~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~   99 (116)
                               +.|..   +.+.....+.+ .|-+..|.+..+-.+.++|. ||..
T Consensus        88 g~~rL~~~~~eNR~fflal~r~i~~L~~-RG~~rTAlE~~KlLlsLdp~~DP~g  140 (360)
T PF04910_consen   88 GNCRLDYRRPENRQFFLALFRYIQSLGR-RGCWRTALEWCKLLLSLDPDEDPLG  140 (360)
T ss_pred             CccccCCccccchHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhcCCCCCcch
Confidence                     11211   33444444345 79999999999999999998 6543

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=96.82  E-value=0.003  Score=23.57  Aligned_cols=21  Identities=33%  Similarity=0.349  Sum_probs=9.6

Q ss_pred             HHHHHHHHHhhcChhhHHHHH
Q psy12719         31 CTLFAQVLVDQEDFDGAEEYF   51 (116)
Q Consensus        31 ~~~~~~~~~~~~~~~~A~~~~   51 (116)
                      ...+|.++...|++++|...+
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            334444444444444444443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.80  E-value=0.0034  Score=25.86  Aligned_cols=27  Identities=19%  Similarity=0.519  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHhhcChhhHHHHHHHHhc
Q psy12719         30 ACTLFAQVLVDQEDFDGAEEYFNRSIR   56 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~   56 (116)
                      ++..+|.+....++|+.|+..|.+++.
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~   29 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALE   29 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            344445555555555555555544443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=96.77  E-value=0.048  Score=32.89  Aligned_cols=63  Identities=24%  Similarity=0.289  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      .++..++..+...++++.+...+++.+..+|.+...|..+-..|+. .|+...|+..|.+.-+.
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHHHHHHH
Confidence            3567788888899999999999999999999999999999999888 89999999999887663

>KOG1585|consensus

Probab=96.76  E-value=0.033  Score=33.02  Aligned_cols=52  Identities=10%  Similarity=0.165  Sum_probs=25.8

Q ss_pred             chhcHHHHHHHHHHHHhhC-----CChhHHHHHHHHHHHhhcChhhHHHHHHHHhcc
Q psy12719          6 DRERVEQSLKEFRNFVDTH-----SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV   57 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~   57 (116)
                      +...+.+++++++++....     |+..-.-...+--.....++++|+..|++++.+
T Consensus        83 e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralav  139 (308)
T KOG1585|consen   83 ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAV  139 (308)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence            3445566666666665443     222222222233334555666666666666544

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.72  E-value=0.0087  Score=35.62  Aligned_cols=68  Identities=13%  Similarity=0.016  Sum_probs=59.7

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML   71 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   71 (116)
                      +...++++.|....++.+..+|+++.-+.-.|.+|.+.|.+.-|++.+...+...|+.+.+-......
T Consensus       191 ~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         191 LLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            34567899999999999999999998889999999999999999999999999999988766554443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=96.71  E-value=0.0045  Score=23.06  Aligned_cols=24  Identities=29%  Similarity=0.391  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12719         63 SLYVHRAMLMLQARGNVDEAIKLIE   87 (116)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~a~~~~~   87 (116)
                      .+.+.+|.++.. .|++++|...++
T Consensus         2 ~a~~~la~~~~~-~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLA-QGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHh
Confidence            467889999888 899999998775

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG4507|consensus

Probab=96.71  E-value=0.0063  Score=40.16  Aligned_cols=89  Identities=12%  Similarity=0.005  Sum_probs=51.7

Q ss_pred             hhcHHHHHHHHHHHHhhCCChh--HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVV--EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      +|+..+|.+++..++...|...  .+...+|.++.+.|...+|--.+..|+...|.....++.++.++.. ++.+.....
T Consensus       226 ~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~am-l~~~N~S~~  304 (886)
T KOG4507|consen  226 KGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAM-LGEYNHSVL  304 (886)
T ss_pred             cCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHH-Hhhhhhhhh
Confidence            4555566666666665555442  2445556666666666666655555555555555556666666555 566666666


Q ss_pred             HHHHHHhcCCCc
Q psy12719         85 LIEKAISIDKSC   96 (116)
Q Consensus        85 ~~~~~~~~~~~~   96 (116)
                      .|..+.+..|..
T Consensus       305 ~ydha~k~~p~f  316 (886)
T KOG4507|consen  305 CYDHALQARPGF  316 (886)
T ss_pred             hhhhhhccCcch
Confidence            666666665543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.70  E-value=0.046  Score=31.70  Aligned_cols=61  Identities=13%  Similarity=0.189  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHhhCCC--h----hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH-HHHHHHHH
Q psy12719         10 VEQSLKEFRNFVDTHSN--V----VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA-SLYVHRAM   70 (116)
Q Consensus        10 ~~~A~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~   70 (116)
                      +..|.+.|.+++.....  .    ..+.+.+|.+..+.|++++|..+|.+++.....+. .....++.
T Consensus       141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR  208 (214)
T ss_pred             HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence            56778888888765422  2    45788899999999999999999999997654443 34555544

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=96.68  E-value=0.0086  Score=23.05  Aligned_cols=28  Identities=18%  Similarity=0.312  Sum_probs=16.1

Q ss_pred             cHHHHHHHHHHHHhhCCChhHHHHHHHH
Q psy12719          9 RVEQSLKEFRNFVDTHSNVVEACTLFAQ   36 (116)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~   36 (116)
                      +.+.+...|++++...|.+...|..+..
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            4455566666666666655555555543

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.68  E-value=0.026  Score=35.96  Aligned_cols=84  Identities=17%  Similarity=0.095  Sum_probs=63.7

Q ss_pred             cchhcHHHHHHHHHHHHhhCCC--------h----------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSN--------V----------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV   66 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~   66 (116)
                      .++++|..|..-|..+++++.+        .          ..+-..+..+|.+.++.+-|+..-.+.|..+|....-+.
T Consensus       187 yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHL  266 (569)
T PF15015_consen  187 YRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHL  266 (569)
T ss_pred             HhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHH
Confidence            4566777777777777666521        1          113456788999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHH
Q psy12719         67 HRAMLMLQARGNVDEAIKLIEKA   89 (116)
Q Consensus        67 ~~~~~~~~~~~~~~~a~~~~~~~   89 (116)
                      ..+.+ ++.+.+|.+|...+--+
T Consensus       267 rqAav-fR~LeRy~eAarSamia  288 (569)
T PF15015_consen  267 RQAAV-FRRLERYSEAARSAMIA  288 (569)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHH
Confidence            99988 55588888887766544

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.64  E-value=0.021  Score=36.36  Aligned_cols=81  Identities=12%  Similarity=0.046  Sum_probs=59.6

Q ss_pred             HHHHHhhcChhhHHHHHHHHhccC--------CCC---H-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719         35 AQVLVDQEDFDGAEEYFNRSIRVD--------PEN---A-------SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC   96 (116)
Q Consensus        35 ~~~~~~~~~~~~A~~~~~~a~~~~--------~~~---~-------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   96 (116)
                      |..++++++|..|.--|+.++.+.        |..   .       .+--.+..||+. +++.+.|+...-+.+.++|..
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~-~rkpdlALnh~hrsI~lnP~~  261 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLR-MRKPDLALNHSHRSINLNPSY  261 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhh-cCCCchHHHHHhhhhhcCcch
Confidence            445566676666666666665442        111   1       123468889888 999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccccC
Q psy12719         97 MFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        97 ~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.-+...+.+...+.+|.+|
T Consensus       262 frnHLrqAavfR~LeRy~eA  281 (569)
T PF15015_consen  262 FRNHLRQAAVFRRLERYSEA  281 (569)
T ss_pred             hhHHHHHHHHHHHHHHHHHH
Confidence            88888888888888777654

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=96.59  E-value=0.02  Score=37.24  Aligned_cols=86  Identities=9%  Similarity=-0.001  Sum_probs=54.2

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      ..|+...|-.....+++..|..++.....+.+....|+|+.+...+..+-..-.....+.-.+-...+. ++++++|...
T Consensus       301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~-l~r~~~a~s~  379 (831)
T PRK15180        301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHG-LARWREALST  379 (831)
T ss_pred             hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhc-hhhHHHHHHH
Confidence            456777777777788888888888778888899999999998888765544332222222222222234 5555555555


Q ss_pred             HHHHHhc
Q psy12719         86 IEKAISI   92 (116)
Q Consensus        86 ~~~~~~~   92 (116)
                      ..-.+..
T Consensus       380 a~~~l~~  386 (831)
T PRK15180        380 AEMMLSN  386 (831)
T ss_pred             HHHHhcc
Confidence            5544443

>KOG1550|consensus

Probab=96.55  E-value=0.12  Score=34.40  Aligned_cols=81  Identities=17%  Similarity=0.184  Sum_probs=64.2

Q ss_pred             cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc---ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh---cCCHHHH
Q psy12719          9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE---DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA---RGNVDEA   82 (116)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~a   82 (116)
                      +...|..+|.++...  +++++.+.+|.++....   ++..|.++|..|...  -+..+.+.++.|+...   ..+.+.|
T Consensus       308 d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A  383 (552)
T KOG1550|consen  308 DYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELA  383 (552)
T ss_pred             cHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHH
Confidence            788899999998777  44566678888887554   678999999988766  4677889999986542   2379999


Q ss_pred             HHHHHHHHhcC
Q psy12719         83 IKLIEKAISID   93 (116)
Q Consensus        83 ~~~~~~~~~~~   93 (116)
                      ..++.++.+.+
T Consensus       384 ~~~~k~aA~~g  394 (552)
T KOG1550|consen  384 FAYYKKAAEKG  394 (552)
T ss_pred             HHHHHHHHHcc
Confidence            99999998887

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.51  E-value=0.0093  Score=24.56  Aligned_cols=29  Identities=31%  Similarity=0.410  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         63 SLYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      .++..+|.+.+. .++|++|++.|.+++++
T Consensus         2 dv~~~Lgeisle-~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLE-NENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHH-hccHHHHHHHHHHHHHH
Confidence            467889999887 89999999999999876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG1258|consensus

Probab=96.46  E-value=0.13  Score=34.03  Aligned_cols=106  Identities=16%  Similarity=0.150  Sum_probs=77.4

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHH---HHHHHhccCCC---CHHHHHHHHHHHHHhcCCH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEE---YFNRSIRVDPE---NASLYVHRAMLMLQARGNV   79 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~---~~~~a~~~~~~---~~~~~~~~~~~~~~~~~~~   79 (116)
                      ..|++..|...++......|+...+-........++|+.+.+..   .+.....-...   ....+...+...+...++.
T Consensus       378 ~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~  457 (577)
T KOG1258|consen  378 SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDA  457 (577)
T ss_pred             hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCH
Confidence            46788999999999988888888877777777888888888773   33322221111   1345666677766778999


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q psy12719         80 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRT  111 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  111 (116)
                      +.|...+.++++..|.+...+..+..+...++
T Consensus       458 ~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  458 DLARIILLEANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence            99999999999999998877777766655443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.45  E-value=0.095  Score=32.31  Aligned_cols=83  Identities=10%  Similarity=0.066  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh--cCCHHHHHHHHH
Q psy12719         10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA--RGNVDEAIKLIE   87 (116)
Q Consensus        10 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~   87 (116)
                      .+.-+.++++|++.+|++...+..+-....+..+.++...-+++++..+|.+...|...-......  .-.+......|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            456788999999999999998888888888888888889999999999999998887665542221  235667777777


Q ss_pred             HHHhc
Q psy12719         88 KAISI   92 (116)
Q Consensus        88 ~~~~~   92 (116)
                      +++..
T Consensus       127 ~~l~~  131 (321)
T PF08424_consen  127 KCLRA  131 (321)
T ss_pred             HHHHH
Confidence            77654

>KOG2300|consensus

Probab=96.39  E-value=0.14  Score=33.48  Aligned_cols=110  Identities=11%  Similarity=0.088  Sum_probs=73.5

Q ss_pred             cchhcHHHHHHHHHHHHhhC---CC-------hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCC-CCH--HHHHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTH---SN-------VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP-ENA--SLYVHRAML   71 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~--~~~~~~~~~   71 (116)
                      .-.|++.+|++....+...+   |.       .+..++.+|......+.++.|...|..+.+... .+.  .+-.+++..
T Consensus       334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~  413 (629)
T KOG2300|consen  334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS  413 (629)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence            34688888888887776654   44       245678888888899999999999999987643 333  345678999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHHhhccccc
Q psy12719         72 MLQARGNVDEAIKLIEKAISIDKSC-------MFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        72 ~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~  115 (116)
                      |++ .++.+.-.+.++..-..+...       ..+++..|.....++++.+
T Consensus       414 YL~-~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnE  463 (629)
T KOG2300|consen  414 YLR-IGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNE  463 (629)
T ss_pred             HHH-hccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHH
Confidence            888 677766655555433332221       3455566666666666554

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.38  E-value=0.052  Score=34.95  Aligned_cols=72  Identities=14%  Similarity=0.205  Sum_probs=52.7

Q ss_pred             HHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHh
Q psy12719         35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS--CMFAYETLGTIEVQ  109 (116)
Q Consensus        35 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~  109 (116)
                      |..++.+|+|.++..+-.=..+++| ++.++..+|.+++. ..+|.+|..++...-. +.+  +..+...++.|+..
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e-~k~Y~eA~~~l~~LP~-n~~~~dskvqKAl~lCqKh  542 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLME-NKRYQEAWEYLQKLPP-NERMRDSKVQKALALCQKH  542 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH-HhhHHHHHHHHHhCCC-chhhHHHHHHHHHHHHHHh
Confidence            3445678999999888877888999 99999999999888 8999999998875432 221  23344455555443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=96.33  E-value=0.016  Score=22.22  Aligned_cols=26  Identities=15%  Similarity=0.189  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy12719         79 VDEAIKLIEKAISIDKSCMFAYETLG  104 (116)
Q Consensus        79 ~~~a~~~~~~~~~~~~~~~~~~~~l~  104 (116)
                      .+.+...+++++...|.++..|....
T Consensus         3 ~~~~r~i~e~~l~~~~~~~~~W~~y~   28 (33)
T smart00386        3 IERARKIYERALEKFPKSVELWLKYA   28 (33)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            34444444444444444444444433

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG2047|consensus

Probab=96.26  E-value=0.2  Score=33.96  Aligned_cols=87  Identities=13%  Similarity=0.173  Sum_probs=58.4

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCC--CCHHHHHH---HHHHHHHhcCCHHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP--ENASLYVH---RAMLMLQARGNVDEA   82 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~---~~~~~~~~~~~~~~a   82 (116)
                      |-++.-...|++.+++.--.|..-.++|..+....-++++.+.|++.+.+.|  ....+|..   ....-+. ...++.|
T Consensus       491 gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg-g~klEra  569 (835)
T KOG2047|consen  491 GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG-GTKLERA  569 (835)
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc-CCCHHHH
Confidence            4455556677777777766777777888887777788888888888887653  33334432   2222233 4567888


Q ss_pred             HHHHHHHHhcCCC
Q psy12719         83 IKLIEKAISIDKS   95 (116)
Q Consensus        83 ~~~~~~~~~~~~~   95 (116)
                      ...|+++++..|.
T Consensus       570 RdLFEqaL~~Cpp  582 (835)
T KOG2047|consen  570 RDLFEQALDGCPP  582 (835)
T ss_pred             HHHHHHHHhcCCH
Confidence            8888888887773

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=96.25  E-value=0.14  Score=34.01  Aligned_cols=90  Identities=16%  Similarity=-0.023  Sum_probs=66.8

Q ss_pred             HHHHHHHHHhhCCChhHHHHH--HHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH-H
Q psy12719         13 SLKEFRNFVDTHSNVVEACTL--FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK-A   89 (116)
Q Consensus        13 A~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~   89 (116)
                      ++..+...+..+|.++.....  +.......++...+......++..+|.+..+..+++..... .|....+...+.. +
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~-~~~~~~~~~~~~~~a  128 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALEL-DGLQFLALADISEIA  128 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHH-hhhHHHHHHHHHHHH
Confidence            455566666677777765433  46677788888899999999999999999999999998666 5666666655555 7


Q ss_pred             HhcCCCcHHHHHHH
Q psy12719         90 ISIDKSCMFAYETL  103 (116)
Q Consensus        90 ~~~~~~~~~~~~~l  103 (116)
                      ....|++......+
T Consensus       129 ~~~~~~~~~~~~~~  142 (620)
T COG3914         129 EWLSPDNAEFLGHL  142 (620)
T ss_pred             HhcCcchHHHHhhH
Confidence            77888876555544

>KOG2300|consensus

Probab=96.23  E-value=0.17  Score=33.04  Aligned_cols=109  Identities=9%  Similarity=0.082  Sum_probs=72.1

Q ss_pred             chhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC-------HHHHHHHHHHHHHh
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-------ASLYVHRAMLMLQA   75 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~   75 (116)
                      .-+.++.|+..|..+.+.....   ...-.++|.+|.+.++-+.-.+..+..-..+..+       ..+++..|...+. 
T Consensus       379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~-  457 (629)
T KOG2300|consen  379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK-  457 (629)
T ss_pred             hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH-
Confidence            3467889999999888775432   2345678899999887666555554432222211       3467777877777 


Q ss_pred             cCCHHHHHHHHHHHHhcCCC-c-----HHHHHHHHHHHHhhccccc
Q psy12719         76 RGNVDEAIKLIEKAISIDKS-C-----MFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        76 ~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~l~~~~~~~~~~~~  115 (116)
                      ++++.+|...+.+.++.... +     ...+..++.+....|+..+
T Consensus       458 qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~e  503 (629)
T KOG2300|consen  458 QNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVE  503 (629)
T ss_pred             hccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence            89999999999999887521 1     3345566777666666543

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.15  E-value=0.13  Score=30.96  Aligned_cols=96  Identities=17%  Similarity=0.176  Sum_probs=56.3

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHh----hcChhhHHHHHHHHhccCCCC-HHHHHHHHHHHHHhcC-----
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPEN-ASLYVHRAMLMLQARG-----   77 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~-----   77 (116)
                      .+..+|.++|..+.  ...++...+.+|.++..    ..+..+|..+|+++....-.. ..+.+.++.++..  |     
T Consensus        91 ~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~--g~~~~~  166 (292)
T COG0790          91 RDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLS--GLQALA  166 (292)
T ss_pred             ccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc--Chhhhc
Confidence            34566777776433  33455566677777765    347777777777777664333 3446666666443  3     


Q ss_pred             ---CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719         78 ---NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ  109 (116)
Q Consensus        78 ---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (116)
                         +...|...+.++-...  ++.+...+|.+|..
T Consensus       167 ~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~  199 (292)
T COG0790         167 VAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEK  199 (292)
T ss_pred             ccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc
Confidence               2335666666665554  45566666665543

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=96.05  E-value=0.21  Score=35.32  Aligned_cols=91  Identities=19%  Similarity=0.176  Sum_probs=67.2

Q ss_pred             chhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhh----c---ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQ----E---DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA   75 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~----~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   75 (116)
                      .-+.|+.|+..|.+.....|+.   -++.+..|.+...+    |   .+++|+.-|++. .-.|.-|--|...+.+|-. 
T Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-  564 (932)
T PRK13184        487 AEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQR-  564 (932)
T ss_pred             hhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHH-
Confidence            3467999999999999999876   45777778776643    2   456666666553 2345556667788888555 


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcHH
Q psy12719         76 RGNVDEAIKLIEKAISIDKSCMF   98 (116)
Q Consensus        76 ~~~~~~a~~~~~~~~~~~~~~~~   98 (116)
                      +|++++-++++.-+++--|..|.
T Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~  587 (932)
T PRK13184        565 LGEYNEEIKSLLLALKRYSQHPE  587 (932)
T ss_pred             hhhHHHHHHHHHHHHHhcCCCCc
Confidence            99999999999999998777654

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=96.02  E-value=0.032  Score=22.66  Aligned_cols=32  Identities=28%  Similarity=0.302  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHH--HHHHHhcCCC
Q psy12719         63 SLYVHRAMLMLQARGNVDEAIKL--IEKAISIDKS   95 (116)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~a~~~--~~~~~~~~~~   95 (116)
                      ..++.+|..++. +|++++|+..  +.-+..++|.
T Consensus         2 e~~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhccc
Confidence            457788888777 8999999999  4466666654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.86  E-value=0.25  Score=31.58  Aligned_cols=39  Identities=13%  Similarity=-0.060  Sum_probs=18.8

Q ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         76 RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        76 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      .|..+.|..+-+++-...|.-+.++...-......|+++
T Consensus       167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd  205 (531)
T COG3898         167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWD  205 (531)
T ss_pred             cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChH
Confidence            455555555555555555554444444333344444443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.78  E-value=0.1  Score=27.49  Aligned_cols=86  Identities=10%  Similarity=0.024  Sum_probs=55.1

Q ss_pred             HHHHHHHH--HHhhcChhhHHHHHHHHhccCCCC------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q psy12719         30 ACTLFAQV--LVDQEDFDGAEEYFNRSIRVDPEN------------ASLYVHRAMLMLQARGNVDEAIKLIEKAISI---   92 (116)
Q Consensus        30 ~~~~~~~~--~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---   92 (116)
                      +|..++..  ....|.|++|...++++.......            .-++-.++..+.. +|+|++++....+++..   
T Consensus         9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-Lgry~e~L~sA~~aL~YFNR   87 (144)
T PF12968_consen    9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-LGRYDECLQSADRALRYFNR   87 (144)
T ss_dssp             HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhh
Confidence            44444433  346788999999999987654221            3356677777666 99999998888888754   


Q ss_pred             ----CCCc----HHHHHHHHHHHHhhcccccC
Q psy12719         93 ----DKSC----MFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        93 ----~~~~----~~~~~~l~~~~~~~~~~~~a  116 (116)
                          +.+.    ..+.+..+..+...|+.++|
T Consensus        88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA  119 (144)
T PF12968_consen   88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEA  119 (144)
T ss_dssp             H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             ccccccccchhHHHHHHHHHHHHHhcCChHHH
Confidence                4443    33445677777777776653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=95.77  E-value=0.11  Score=32.59  Aligned_cols=93  Identities=9%  Similarity=0.020  Sum_probs=66.1

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCC-hhH-HHHHHHHHHHhhcChhhHHHHHHHHhccCCC-----CHHHHHHHHHHHHHhc
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSN-VVE-ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE-----NASLYVHRAMLMLQAR   76 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~   76 (116)
                      ..+.|.+..|.++.+-.+.++|. ++- +.+.+=....+.++++=-+..++........     -|..-+..+.+++. .
T Consensus       113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~-l  191 (360)
T PF04910_consen  113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR-L  191 (360)
T ss_pred             HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH-h
Confidence            35678999999999999999998 543 3444444456778887777777665542111     23456777777777 6


Q ss_pred             CCH---------------HHHHHHHHHHHhcCCCcH
Q psy12719         77 GNV---------------DEAIKLIEKAISIDKSCM   97 (116)
Q Consensus        77 ~~~---------------~~a~~~~~~~~~~~~~~~   97 (116)
                      ++.               +.|...+.+|+...|...
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl  227 (360)
T PF04910_consen  192 EKEESSQSSAQSGRSENSESADEALQKAILRFPWVL  227 (360)
T ss_pred             cCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence            666               899999999998877653

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.77  E-value=0.084  Score=25.52  Aligned_cols=57  Identities=9%  Similarity=0.106  Sum_probs=34.3

Q ss_pred             HHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHH---HHHHhcCCHHHHHHHHHHHH
Q psy12719         33 LFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM---LMLQARGNVDEAIKLIEKAI   90 (116)
Q Consensus        33 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~   90 (116)
                      ..|.-++..++.++|+..++++++..++.+..+..+|.   ++.. .|+|++.+....+-+
T Consensus        11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e-~Gkyr~~L~fA~~Q~   70 (80)
T PF10579_consen   11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHME-WGKYREMLAFALQQL   70 (80)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            34444557777777777777777777766554444443   3334 566666665554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=95.75  E-value=0.2  Score=29.72  Aligned_cols=77  Identities=8%  Similarity=0.036  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHhhCCCh------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHHHHHHHHHhcCCH
Q psy12719         12 QSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQARGNV   79 (116)
Q Consensus        12 ~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~   79 (116)
                      ..++.+.+++......      ..+...+|..|+..|++++|...|+.+.......      ..+...+..|... .|+.
T Consensus       156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~-~~~~  234 (247)
T PF11817_consen  156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKR-LGDV  234 (247)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH-hCCH
Confidence            4455555555544321      2244567777777777777777777775443221      2344455555555 6666


Q ss_pred             HHHHHHHHHH
Q psy12719         80 DEAIKLIEKA   89 (116)
Q Consensus        80 ~~a~~~~~~~   89 (116)
                      +..+...-+.
T Consensus       235 ~~~l~~~leL  244 (247)
T PF11817_consen  235 EDYLTTSLEL  244 (247)
T ss_pred             HHHHHHHHHH
Confidence            6666555443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.74  E-value=0.19  Score=30.37  Aligned_cols=74  Identities=20%  Similarity=0.254  Sum_probs=54.1

Q ss_pred             HhhcChhhHHHHHHHHhccC----CCC----HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcC----C---Cc------
Q psy12719         39 VDQEDFDGAEEYFNRSIRVD----PEN----ASLYVHRAMLMLQARG-NVDEAIKLIEKAISID----K---SC------   96 (116)
Q Consensus        39 ~~~~~~~~A~~~~~~a~~~~----~~~----~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~----~---~~------   96 (116)
                      .++|+++.|..++.++-...    |+.    ....++.|...+. .+ +++.|..+++++.+.-    +   ..      
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~-~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS-KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            47899999999999986544    333    3467888888777 78 9999999999998872    1   11      


Q ss_pred             -HHHHHHHHHHHHhhccc
Q psy12719         97 -MFAYETLGTIEVQRTFV  113 (116)
Q Consensus        97 -~~~~~~l~~~~~~~~~~  113 (116)
                       ..++..++.++...+.+
T Consensus        83 r~~iL~~La~~~l~~~~~  100 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTY  100 (278)
T ss_pred             HHHHHHHHHHHHHcCCCh
Confidence             34566777777666554

It is also involved in sporulation [].

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=95.57  E-value=0.062  Score=34.14  Aligned_cols=60  Identities=15%  Similarity=0.048  Sum_probs=45.4

Q ss_pred             HHHHHHHHHhhcChhhHHHHHHHHhc--------cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12719         31 CTLFAQVLVDQEDFDGAEEYFNRSIR--------VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAIS   91 (116)
Q Consensus        31 ~~~~~~~~~~~~~~~~A~~~~~~a~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   91 (116)
                      ..++.+++.-.|||..|++.++-.--        ..+-...+++..|.+|+- +++|.+|++.|...+.
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylM-lrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLM-LRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            45566778889999999998865311        122345678999999888 8999999999988764

>KOG0530|consensus

Probab=95.52  E-value=0.27  Score=29.66  Aligned_cols=82  Identities=9%  Similarity=0.141  Sum_probs=53.9

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChh-hHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFD-GAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI   86 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   86 (116)
                      .+..+-++++.+.+..+|++-.+|-..-.+....|++. .-++....++..+..+-.+|..+-.+... -+.++.-....
T Consensus        92 ~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~-F~~~~~EL~y~  170 (318)
T KOG0530|consen   92 SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRF-FKDYEDELAYA  170 (318)
T ss_pred             HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHH-HhhHHHHHHHH
Confidence            34566678888888888888888877777777777766 66677778888877777777666555332 33344333333


Q ss_pred             HHHH
Q psy12719         87 EKAI   90 (116)
Q Consensus        87 ~~~~   90 (116)
                      .+.+
T Consensus       171 ~~Ll  174 (318)
T KOG0530|consen  171 DELL  174 (318)
T ss_pred             HHHH
Confidence            3333

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=95.50  E-value=0.18  Score=29.67  Aligned_cols=97  Identities=14%  Similarity=0.171  Sum_probs=54.9

Q ss_pred             CccccchhcHHHHHHHHHHHHhhC---CChhH---------HHHHHHHHHHhhcChhhH--HHHHHHHhc--cCCCCHH-
Q psy12719          1 MIVPGDRERVEQSLKEFRNFVDTH---SNVVE---------ACTLFAQVLVDQEDFDGA--EEYFNRSIR--VDPENAS-   63 (116)
Q Consensus         1 ~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~---------~~~~~~~~~~~~~~~~~A--~~~~~~a~~--~~~~~~~-   63 (116)
                      |+-..+.|+++.|+++...+++.+   |+...         -...-+......|..-+.  ...+.....  .-|+... 
T Consensus        90 mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrA  169 (230)
T PHA02537         90 MVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRA  169 (230)
T ss_pred             eeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHH
Confidence            345578899999999999999987   43211         111222233344442211  111222211  1133333 


Q ss_pred             -HHHHHHHHHHH--------hcCCHHHHHHHHHHHHhcCCCcH
Q psy12719         64 -LYVHRAMLMLQ--------ARGNVDEAIKLIEKAISIDKSCM   97 (116)
Q Consensus        64 -~~~~~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~   97 (116)
                       .+-..|..+++        ..++...|...+++++.++|+..
T Consensus       170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G  212 (230)
T PHA02537        170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG  212 (230)
T ss_pred             HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence             34445555432        24578899999999999999863

>KOG0546|consensus

Probab=95.45  E-value=0.032  Score=34.54  Aligned_cols=102  Identities=20%  Similarity=0.145  Sum_probs=76.7

Q ss_pred             cchhcHHHHHHHHHHHHhhCC-----------C--------hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHS-----------N--------VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY   65 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~-----------~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   65 (116)
                      .+.++++.|..-+.++...-.           +        -......++.+-...+.+..|+.....++..++....++
T Consensus       233 ~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~  312 (372)
T KOG0546|consen  233 FKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAH  312 (372)
T ss_pred             hhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHH
Confidence            345667777766666654321           1        012345566777788899999988888888888889999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy12719         66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE  107 (116)
Q Consensus        66 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  107 (116)
                      +.++..+.. ..++++|.+.+..+....|++......+..+-
T Consensus       313 ~Rr~~~~~~-~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~  353 (372)
T KOG0546|consen  313 YRRGQAYKL-LKNYDEALEDLKKAKQKAPNDKAIEEELENVR  353 (372)
T ss_pred             HHHHhHHHh-hhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence            999999777 89999999999999999999877665555443

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=95.36  E-value=0.18  Score=28.63  Aligned_cols=51  Identities=20%  Similarity=0.333  Sum_probs=36.1

Q ss_pred             hhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719         44 FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC   96 (116)
Q Consensus        44 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   96 (116)
                      ....++..++.++..| ++..+.+++.++.. .|+.++|.....++....|.+
T Consensus       127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~-~G~~~eA~~~~~~~~~lyP~~  177 (193)
T PF11846_consen  127 LEAYIEWAERLLRRRP-DPNVYQRYALALAL-LGDPEEARQWLARARRLYPAD  177 (193)
T ss_pred             HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCcH
Confidence            3444555666666666 45566777777666 788888888888888888843

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF12854 PPR_1: PPR repeat

Probab=95.32  E-value=0.065  Score=21.28  Aligned_cols=26  Identities=19%  Similarity=0.188  Sum_probs=17.1

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHH
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNR   53 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~   53 (116)
                      ...|..+-..+.+.|+.++|.+.+++
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            44566666667777777777776654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.24  E-value=0.37  Score=29.46  Aligned_cols=44  Identities=20%  Similarity=0.145  Sum_probs=36.2

Q ss_pred             HHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCC
Q psy12719         16 EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP   59 (116)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~   59 (116)
                      .+++.+..+|++.+..+.++..+...|+.++|.+.+-..++.+-
T Consensus       224 ~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~  267 (304)
T COG3118         224 DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR  267 (304)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            34555667799999999999999999999999999888777653

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=95.18  E-value=0.3  Score=28.13  Aligned_cols=71  Identities=15%  Similarity=0.202  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHhhC-CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC----CHHHHHHHHHHHHHhcCCHHHHH
Q psy12719         11 EQSLKEFRNFVDTH-SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE----NASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus        11 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +.|...|-++-... -+++.....+|..|. ..+.++++..+.+++...+.    ++..+..++.++.+ +|+++.|-
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~-~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK-LKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-hcchhhhh
Confidence            44555554443222 234666777776664 78899999999999987543    48899999999887 89998874

>KOG1914|consensus

Probab=95.12  E-value=0.59  Score=31.17  Aligned_cols=91  Identities=12%  Similarity=0.138  Sum_probs=55.3

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhcc--CCC-CHHHHHHHHHHHHHhcCCH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--DPE-NASLYVHRAMLMLQARGNV   79 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~-~~~~~~~~~~~~~~~~~~~   79 (116)
                      -|..+++...|..+|+-.++..++++..-..+...+...++-..+...|++++..  .|+ +...|-..-..-.. -|+.
T Consensus       410 Ey~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~-vGdL  488 (656)
T KOG1914|consen  410 EYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN-VGDL  488 (656)
T ss_pred             HHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh-cccH
Confidence            3455667777777777777777777766666666666777777777777777665  332 23344444443233 5666


Q ss_pred             HHHHHHHHHHHhcCC
Q psy12719         80 DEAIKLIEKAISIDK   94 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~   94 (116)
                      ....+.-++-....|
T Consensus       489 ~si~~lekR~~~af~  503 (656)
T KOG1914|consen  489 NSILKLEKRRFTAFP  503 (656)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            666665555555444

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=95.09  E-value=0.35  Score=28.45  Aligned_cols=56  Identities=16%  Similarity=0.261  Sum_probs=45.0

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN   61 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~   61 (116)
                      +.+..++++...+.-++..|.+....-.+-.+++-.|+|++|..-++-+-.+.|+.
T Consensus        13 ~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455          13 DDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             HhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            45667888888888888888887777777777888888888888888888888765

>PF13226 DUF4034: Domain of unknown function (DUF4034)

Probab=95.05  E-value=0.41  Score=29.04  Aligned_cols=108  Identities=11%  Similarity=0.039  Sum_probs=68.4

Q ss_pred             chhcHHHHHHHHHHHHhhCCCh--hHHHHHHHHHH---HhhcC----hhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh-
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNV--VEACTLFAQVL---VDQED----FDGAEEYFNRSIRVDPENASLYVHRAMLMLQA-   75 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~-   75 (116)
                      ..++|++-...+.+.......+  .+..+..+...   .....    ...-...++.-++..|++..++..+|..+... 
T Consensus        12 ~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~A   91 (277)
T PF13226_consen   12 QARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYWVHRA   91 (277)
T ss_pred             HhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence            4577777777777766443321  11111222111   11111    12356667777888999999888888876541 


Q ss_pred             --------------------cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccc
Q psy12719         76 --------------------RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFV  113 (116)
Q Consensus        76 --------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  113 (116)
                                          ..-.+.|...+.++++++|....+...+-.+-...|.+
T Consensus        92 w~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP  149 (277)
T PF13226_consen   92 WDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP  149 (277)
T ss_pred             HHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence                                12367888999999999999988888777776665544

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.04  E-value=0.17  Score=30.63  Aligned_cols=51  Identities=6%  Similarity=0.083  Sum_probs=46.7

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhc
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR   56 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~   56 (116)
                      ..++++.++..+++.+..+|-+-..|..+-..|...|+...|+..|++.-+
T Consensus       165 ~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         165 ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            457789999999999999999999999999999999999999999988765

>KOG0529|consensus

Probab=94.83  E-value=0.61  Score=29.86  Aligned_cols=100  Identities=16%  Similarity=0.280  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHh------------hcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcC-
Q psy12719         11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVD------------QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG-   77 (116)
Q Consensus        11 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-   77 (116)
                      .++++.-.+.+..+|+...+|+..-.++..            +.-.++-+.+...+++.+|++..+|+.+..++.+ .+ 
T Consensus        46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~-~p~  124 (421)
T KOG0529|consen   46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQK-NPH  124 (421)
T ss_pred             hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-CCC
Confidence            345555566667778876666554333221            2245666788889999999999999999999654 33 


Q ss_pred             -CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q psy12719         78 -NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRT  111 (116)
Q Consensus        78 -~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  111 (116)
                       ++..-.+..+++++.+|.+-.+|...-.+.....
T Consensus       125 ~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~  159 (421)
T KOG0529|consen  125 SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAE  159 (421)
T ss_pred             chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHh
Confidence             3678889999999999999888877666655443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=94.81  E-value=0.1  Score=22.22  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=11.8

Q ss_pred             HHHHHHHhhcChhhHHHHHHHHh
Q psy12719         33 LFAQVLVDQEDFDGAEEYFNRSI   55 (116)
Q Consensus        33 ~~~~~~~~~~~~~~A~~~~~~a~   55 (116)
                      .++..|...|+.+.|+..++..+
T Consensus         4 dLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHH
Confidence            34455555555555555555544

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=94.67  E-value=0.5  Score=29.04  Aligned_cols=57  Identities=18%  Similarity=0.148  Sum_probs=40.8

Q ss_pred             HHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12719         32 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA   89 (116)
Q Consensus        32 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   89 (116)
                      ...+..|...|.+.+|+.+.++++..+|-+...+..+-..+.. .|+--.+.+.+++.
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~-~gD~is~~khyery  339 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLAT-LGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-hccchhhhhHHHHH
Confidence            3445667788888888888888888888888877777777555 67755555555443

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=94.65  E-value=0.35  Score=26.25  Aligned_cols=48  Identities=19%  Similarity=0.122  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcc
Q psy12719         64 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTF  112 (116)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  112 (116)
                      .....+...+. .|++.-|.+.+..++..+|++..+....+.++.++|.
T Consensus        72 ~vl~~A~~~~~-~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   72 KVLERAQAALA-AGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             HHHHHHHHHHH-CT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            34445555455 6777777777777777777777777777777666654

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.43  E-value=0.48  Score=26.93  Aligned_cols=43  Identities=12%  Similarity=0.042  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy12719         63 SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE  107 (116)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  107 (116)
                      .+.-.+|..-++ .|++.+|.+.|..... +...|....+.+.+.
T Consensus       168 sArEALglAa~k-agd~a~A~~~F~qia~-Da~aprnirqRAq~m  210 (221)
T COG4649         168 SAREALGLAAYK-AGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM  210 (221)
T ss_pred             HHHHHHhHHHHh-ccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence            345556666666 6888888888877665 333344444444443

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.36  E-value=0.74  Score=30.19  Aligned_cols=77  Identities=14%  Similarity=0.140  Sum_probs=61.2

Q ss_pred             HHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12719         16 EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID   93 (116)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   93 (116)
                      -+..-++.+|.+...|+.+..-+..++.+++-.+.|.+.....|--+.+|...-.--+. .+++......+.+++...
T Consensus        30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA-~~df~svE~lf~rCL~k~  106 (660)
T COG5107          30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELA-RKDFRSVESLFGRCLKKS  106 (660)
T ss_pred             HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhh-hhhHHHHHHHHHHHHhhh
Confidence            46667888999999999999999999999999999999999888877777654333334 477777777777777653

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.32  E-value=0.51  Score=26.82  Aligned_cols=108  Identities=18%  Similarity=0.126  Sum_probs=72.4

Q ss_pred             hcHHHHHHHHHHHHhhCCCh--hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC--CH--HHHHHHHHHHHHhcCCHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNV--VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE--NA--SLYVHRAMLMLQARGNVDE   81 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~--~~~~~~~~~~~~~~~~~~~   81 (116)
                      +..++|+..|...-+..-.+  .-+.+..+.+....|+...|+..|..+-...|-  ..  .+...-+.++.. .|.|++
T Consensus        72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD-~gsy~d  150 (221)
T COG4649          72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD-NGSYDD  150 (221)
T ss_pred             CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc-cccHHH
Confidence            44566666666665554444  235677888889999999999999987765432  22  244555666555 799988


Q ss_pred             HHHHHHHHH-hcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         82 AIKLIEKAI-SIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        82 a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      -..-.+..- ..+|-...+...||..-.+.|++.+|
T Consensus       151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A  186 (221)
T COG4649         151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKA  186 (221)
T ss_pred             HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHH
Confidence            776665432 22444466777888888888887653

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=94.27  E-value=0.12  Score=19.41  Aligned_cols=25  Identities=16%  Similarity=0.167  Sum_probs=14.2

Q ss_pred             HHHHHHHHHhhcChhhHHHHHHHHh
Q psy12719         31 CTLFAQVLVDQEDFDGAEEYFNRSI   55 (116)
Q Consensus        31 ~~~~~~~~~~~~~~~~A~~~~~~a~   55 (116)
                      |..+-..+.+.|++++|.+.+++..
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~   27 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMR   27 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHh
Confidence            3444455556666666666665544

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=94.24  E-value=0.19  Score=21.44  Aligned_cols=26  Identities=23%  Similarity=0.373  Sum_probs=23.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         66 VHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        66 ~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      +.++..|.. .|+.+.|.+.+++.+..
T Consensus         3 LdLA~ayie-~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         3 LDLARAYIE-MGDLEGARELLEEVIEE   28 (44)
T ss_pred             hHHHHHHHH-cCChHHHHHHHHHHHHc
Confidence            578899888 99999999999999954

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG2041|consensus

Probab=94.11  E-value=0.41  Score=33.02  Aligned_cols=60  Identities=17%  Similarity=0.272  Sum_probs=43.9

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHhc----------------------cCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSIR----------------------VDPENASLYVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      .+++..+|..+..+..|.+|.++|.+.-.                      .-|++...+-.+|.++.. .|.-++|.+.
T Consensus       796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~s-vGMC~qAV~a  874 (1189)
T KOG2041|consen  796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTS-VGMCDQAVEA  874 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHh-hchHHHHHHH
Confidence            35888999999999999999998876422                      226666666677777555 7887877777


Q ss_pred             HHH
Q psy12719         86 IEK   88 (116)
Q Consensus        86 ~~~   88 (116)
                      +.+
T Consensus       875 ~Lr  877 (1189)
T KOG2041|consen  875 YLR  877 (1189)
T ss_pred             HHh
Confidence            654

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=94.00  E-value=0.71  Score=27.46  Aligned_cols=71  Identities=18%  Similarity=0.037  Sum_probs=48.5

Q ss_pred             ChhhHHHHHHHHhccCCCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhh
Q psy12719         43 DFDGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQR  110 (116)
Q Consensus        43 ~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~  110 (116)
                      .....++.+.++.......      ......+|.-|+. .|++++|.+.++.+.......      ..+...+..|....
T Consensus       153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~-~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~  231 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFR-LGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL  231 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            3345566666666543321      3356688999888 899999999999996553321      45667778888888


Q ss_pred             cccc
Q psy12719        111 TFVV  114 (116)
Q Consensus       111 ~~~~  114 (116)
                      |+.+
T Consensus       232 ~~~~  235 (247)
T PF11817_consen  232 GDVE  235 (247)
T ss_pred             CCHH
Confidence            8765

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=93.88  E-value=0.11  Score=34.06  Aligned_cols=92  Identities=8%  Similarity=-0.016  Sum_probs=63.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      ....|+|+.+...+..+-..-.....+...+-...+..+++++|.......+...-..+.+....+...-. +|-++++.
T Consensus       333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~-l~~~d~~~  411 (831)
T PRK15180        333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADA-LQLFDKSY  411 (831)
T ss_pred             HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHH-HhHHHHHH
Confidence            34567888887777665444333334444555666789999999998888887666666655544444334 78889999


Q ss_pred             HHHHHHHhcCCCc
Q psy12719         84 KLIEKAISIDKSC   96 (116)
Q Consensus        84 ~~~~~~~~~~~~~   96 (116)
                      -++++.+.++|..
T Consensus       412 ~~wk~~~~~~~~~  424 (831)
T PRK15180        412 HYWKRVLLLNPET  424 (831)
T ss_pred             HHHHHHhccCChh
Confidence            9999999888754

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.79  E-value=1.2  Score=29.08  Aligned_cols=30  Identities=17%  Similarity=0.224  Sum_probs=21.0

Q ss_pred             ChhHHHHHHHHHHHhhcChhhHHHHHHHHh
Q psy12719         26 NVVEACTLFAQVLVDQEDFDGAEEYFNRSI   55 (116)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~   55 (116)
                      +++..|..+|.....+|+++-|.++|.++-
T Consensus       345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~  374 (443)
T PF04053_consen  345 DDPEKWKQLGDEALRQGNIELAEECYQKAK  374 (443)
T ss_dssp             STHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence            345577777777777777777777776653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1839|consensus

Probab=93.67  E-value=0.6  Score=34.01  Aligned_cols=97  Identities=14%  Similarity=0.154  Sum_probs=68.7

Q ss_pred             HHHHH-HhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC--------CCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719         16 EFRNF-VDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--------PENASLYVHRAMLMLQARGNVDEAIKLI   86 (116)
Q Consensus        16 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~   86 (116)
                      .+... -...|+....+..++.++...++.++|+..-.++.-+.        |+....+.+++...+. .++...|...+
T Consensus       960 l~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~-~~~~~~al~~~ 1038 (1236)
T KOG1839|consen  960 LLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFA-VKNLSGALKSL 1038 (1236)
T ss_pred             HHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHh-ccCccchhhhH
Confidence            55522 33457788899999999999999999999988876543        3445678888887776 78888888888


Q ss_pred             HHHHhc--------CCCcHHHHHHHHHHHHhhccc
Q psy12719         87 EKAISI--------DKSCMFAYETLGTIEVQRTFV  113 (116)
Q Consensus        87 ~~~~~~--------~~~~~~~~~~l~~~~~~~~~~  113 (116)
                      .++...        .|.......+++.++...+++
T Consensus      1039 ~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~ 1073 (1236)
T KOG1839|consen 1039 NRALKLKLLSSGEDHPPTALSFINLELLLLGVEEA 1073 (1236)
T ss_pred             HHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHH
Confidence            888764        344444445566555544444

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=93.57  E-value=1.8  Score=30.57  Aligned_cols=105  Identities=16%  Similarity=0.141  Sum_probs=72.9

Q ss_pred             chhcHHHHHHHHHHHHhhCCC--h-------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC-----HHHHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSN--V-------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-----ASLYVHRAML   71 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~~~~~   71 (116)
                      ...++.+|..++.+....-|.  .       ....-..|.+....|++++|....+.++..-|.+     ..++...|.+
T Consensus       427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a  506 (894)
T COG2909         427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA  506 (894)
T ss_pred             HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence            356788888888877665443  1       2233456777788999999999999999887765     3467778888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCC----cHH--HHHHHHHHHHhhc
Q psy12719         72 MLQARGNVDEAIKLIEKAISIDKS----CMF--AYETLGTIEVQRT  111 (116)
Q Consensus        72 ~~~~~~~~~~a~~~~~~~~~~~~~----~~~--~~~~l~~~~~~~~  111 (116)
                      ..- .|++++|..+...+.+....    .-.  +....+.+...+|
T Consensus       507 ~~~-~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG  551 (894)
T COG2909         507 AHI-RGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG  551 (894)
T ss_pred             HHH-hchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence            655 89999999999888776322    222  2333455555555

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=93.56  E-value=0.18  Score=32.23  Aligned_cols=51  Identities=12%  Similarity=0.040  Sum_probs=39.4

Q ss_pred             cchhcHHHHHHHHHHHHhhC---------CChhHHHHHHHHHHHhhcChhhHHHHHHHHhc
Q psy12719          5 GDRERVEQSLKEFRNFVDTH---------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR   56 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~   56 (116)
                      .-.|||..|++.++..- .+         +-+..+++..|.+|+-.++|.+|+..|...+.
T Consensus       133 ~LLGDY~~Alk~l~~id-l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  133 CLLGDYYQALKVLENID-LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HhccCHHHHHHHhhccC-cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34689999988876642 22         22345788999999999999999999998764

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.52  E-value=0.24  Score=30.38  Aligned_cols=51  Identities=8%  Similarity=-0.019  Sum_probs=44.5

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS   54 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a   54 (116)
                      |...|.+.+|+++.++++..+|-+...+..+-.++...|+--.+...|++.
T Consensus       289 yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         289 YLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            456788999999999999999999999999999999999987777777653

>KOG3617|consensus

Probab=93.46  E-value=1  Score=31.91  Aligned_cols=85  Identities=16%  Similarity=0.260  Sum_probs=60.2

Q ss_pred             chhcHHHHHHHHHHH----------HhhCCCh----------hHHHHHHHHHHHhhcChhhHHHHHHHHhccC-------
Q psy12719          6 DRERVEQSLKEFRNF----------VDTHSNV----------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-------   58 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~----------~~~~~~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------   58 (116)
                      ..++.+.|+++|+++          +..+|..          ...|..-|......|+.+.|+.+|..+-...       
T Consensus       870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C  949 (1416)
T KOG3617|consen  870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKC  949 (1416)
T ss_pred             hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEe
Confidence            346677788888764          2333432          3356677888888999999999998864321       


Q ss_pred             --------------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12719         59 --------------PENASLYVHRAMLMLQARGNVDEAIKLIEKAIS   91 (116)
Q Consensus        59 --------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   91 (116)
                                    ..+..+-|.+|..|-. .|+..+|+..|.++-.
T Consensus       950 ~qGk~~kAa~iA~esgd~AAcYhlaR~YEn-~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  950 IQGKTDKAARIAEESGDKAACYHLARMYEN-DGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             eccCchHHHHHHHhcccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence                          2345577889998666 8999999988877644

>KOG1839|consensus

Probab=93.31  E-value=0.36  Score=35.04  Aligned_cols=111  Identities=17%  Similarity=0.252  Sum_probs=79.0

Q ss_pred             cccchhcHHHHHHHHHHHHhhC--------CChhHHHHHHHHHHHhhcChhhHHHHHHHHhcc--------CCCCHHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTH--------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--------DPENASLYV   66 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~   66 (116)
                      ++...+++++|+..-.++.-..        |+....+..++...+..+....|...+.++...        .|.-.....
T Consensus       982 l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~ 1061 (1236)
T KOG1839|consen  982 LSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFI 1061 (1236)
T ss_pred             HHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhh
Confidence            3456778888888776665433        444567888888888888998999888887643        344455667


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHhhcccc
Q psy12719         67 HRAMLMLQARGNVDEAIKLIEKAISIDKS--------CMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        67 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~  114 (116)
                      +++.+++. .++++.|+++++.+...+..        ....+..+++.....+++.
T Consensus      1062 nle~l~~~-v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr 1116 (1236)
T KOG1839|consen 1062 NLELLLLG-VEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFR 1116 (1236)
T ss_pred             HHHHHHhh-HHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHH
Confidence            78887655 79999999999999886322        2445666777776666654

>KOG3807|consensus

Probab=93.21  E-value=1.3  Score=27.93  Aligned_cols=83  Identities=17%  Similarity=0.236  Sum_probs=54.7

Q ss_pred             cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCC-----------------------CCHH--
Q psy12719          9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP-----------------------ENAS--   63 (116)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----------------------~~~~--   63 (116)
                      +..+-++....+++++|+++.++..++.-  ..--..+|...++++++...                       .+..  
T Consensus       199 np~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~Y  276 (556)
T KOG3807|consen  199 NPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVY  276 (556)
T ss_pred             CcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhH
Confidence            34455667778889999988888777653  23344566666666554320                       1112  


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12719         64 LYVHRAMLMLQARGNVDEAIKLIEKAISIDK   94 (116)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   94 (116)
                      +-..++.|.-+ +|+..+|++.++...+..|
T Consensus       277 IKRRLAMCARk-lGrlrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  277 IKRRLAMCARK-LGRLREAVKIMRDLMKEFP  306 (556)
T ss_pred             HHHHHHHHHHH-hhhHHHHHHHHHHHhhhcc
Confidence            23457777544 8999999999998887777

>KOG2422|consensus

Probab=93.15  E-value=1.8  Score=29.24  Aligned_cols=101  Identities=24%  Similarity=0.249  Sum_probs=67.3

Q ss_pred             cchhcHHHHHHHHHHHHhhC------------CChhHHHHHHHHHHHhhcChhhHHHHHHHHh-------c--cC-----
Q psy12719          5 GDRERVEQSLKEFRNFVDTH------------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSI-------R--VD-----   58 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-------~--~~-----   58 (116)
                      .....|+++...|.-++...            |-+.+.+..++.++..+|+.+.|.....+++       .  ..     
T Consensus       249 ~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~  328 (665)
T KOG2422|consen  249 EHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGN  328 (665)
T ss_pred             ecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccc
Confidence            34567888888888877654            5556788999999999999988877776664       1  11     


Q ss_pred             -------CCCHHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Q psy12719         59 -------PENASLYV---HRAMLMLQARGNVDEAIKLIEKAISIDKS-CMFAYETLGTI  106 (116)
Q Consensus        59 -------~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~  106 (116)
                             |.+...+.   ..-.. +...|-+..|.++.+-.++++|. +|.+...+..+
T Consensus       329 cRL~y~~~eNR~FyL~l~r~m~~-l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~  386 (665)
T KOG2422|consen  329 CRLPYIYPENRQFYLALFRYMQS-LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDI  386 (665)
T ss_pred             ccCcccchhhHHHHHHHHHHHHH-HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHH
Confidence                   22222211   11111 12379999999999999999998 66544443333

>KOG0985|consensus

Probab=92.88  E-value=2.8  Score=30.71  Aligned_cols=62  Identities=15%  Similarity=0.153  Sum_probs=49.8

Q ss_pred             ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12719         26 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID   93 (116)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   93 (116)
                      +.+.+|..+|....+.+...+|++.|-++     +++..+.......-+ .|.+++-+.++..+.+..
T Consensus      1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~-~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASR-TGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred             CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHh-cCcHHHHHHHHHHHHHhh
Confidence            34678999999999999999999999553     566677777777555 899999999998887653

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=92.87  E-value=1.5  Score=27.68  Aligned_cols=49  Identities=12%  Similarity=0.031  Sum_probs=42.7

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS   54 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a   54 (116)
                      .....-+|+-+++.++...|.+......+..+|...|-...|...|...
T Consensus       195 ~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L  243 (365)
T PF09797_consen  195 DSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL  243 (365)
T ss_pred             CHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence            3455678889999999999999999999999999999999999988653

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=92.54  E-value=0.65  Score=22.56  Aligned_cols=48  Identities=8%  Similarity=0.204  Sum_probs=28.6

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHH---HHHHHHHHHhhcChhhHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEA---CTLFAQVLVDQEDFDGAEEYFNR   53 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~A~~~~~~   53 (116)
                      .+.+.++|+..+.++++..++.++-   +..+..+++..|++.+++.+-.+
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~   68 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ   68 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677777777777766655443   33344455666666666655443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=92.44  E-value=1.2  Score=25.34  Aligned_cols=51  Identities=18%  Similarity=0.249  Sum_probs=40.3

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCC
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP   59 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~   59 (116)
                      ...+..++..++.++..|+ +.++..++.++...|+.++|.....++....|
T Consensus       125 ~~l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP  175 (193)
T PF11846_consen  125 EMLEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP  175 (193)
T ss_pred             HHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            3445556667777777775 67778888999999999999999999998888

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG3783|consensus

Probab=92.34  E-value=2.3  Score=28.40  Aligned_cols=93  Identities=13%  Similarity=0.080  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12719         11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN--ASLYVHRAMLMLQARGNVDEAIKLIEK   88 (116)
Q Consensus        11 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~   88 (116)
                      ....+.+.......|+++...+..+..+...|+.+.|+.+++.++...-+.  .-.++.++.++.. +.++.+|...+..
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~-~~~~~~aad~~~~  328 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVG-QHQYSRAADSFDL  328 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHH
Confidence            344455566667788888888888999999999889999999888711111  2256788888777 7899999999988


Q ss_pred             HHhcCCCcHHHHHHHH
Q psy12719         89 AISIDKSCMFAYETLG  104 (116)
Q Consensus        89 ~~~~~~~~~~~~~~l~  104 (116)
                      ..+.+.=+...|..++
T Consensus       329 L~desdWS~a~Y~Yfa  344 (546)
T KOG3783|consen  329 LRDESDWSHAFYTYFA  344 (546)
T ss_pred             HHhhhhhhHHHHHHHH
Confidence            8777655555555555

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=91.98  E-value=1.2  Score=24.29  Aligned_cols=47  Identities=21%  Similarity=0.223  Sum_probs=37.0

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ   74 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   74 (116)
                      .+.....+...+..|++.-|.+..+.++..+|++..+...++.++.+
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~  116 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQ  116 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            34556778888899999999999999999999999988888888544

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=91.74  E-value=0.39  Score=18.31  Aligned_cols=23  Identities=17%  Similarity=0.226  Sum_probs=12.1

Q ss_pred             HHHHHHHhhcChhhHHHHHHHHh
Q psy12719         33 LFAQVLVDQEDFDGAEEYFNRSI   55 (116)
Q Consensus        33 ~~~~~~~~~~~~~~A~~~~~~a~   55 (116)
                      .+-..+.+.|++++|...|.+..
T Consensus         5 ~li~~~~~~~~~~~a~~~~~~M~   27 (35)
T TIGR00756         5 TLIDGLCKAGRVEEALELFKEML   27 (35)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH
Confidence            34444555555555555555543

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG2908|consensus

Probab=91.45  E-value=2.4  Score=26.76  Aligned_cols=89  Identities=8%  Similarity=0.080  Sum_probs=60.5

Q ss_pred             cchhcHHHHHHHHHHHHhhCCC----hh--HHHHHHHHHHHhhcChhhHHHHHHHHhc-------cCCCCHHHHHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSN----VV--EACTLFAQVLVDQEDFDGAEEYFNRSIR-------VDPENASLYVHRAML   71 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~-------~~~~~~~~~~~~~~~   71 (116)
                      .+.++.++|++++++.++.-..    ++  ......|.++...|+..++.+.+...-+       ..|.--..++.++.-
T Consensus        86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssq  165 (380)
T KOG2908|consen   86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQ  165 (380)
T ss_pred             HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHH
Confidence            3456889999999988765311    12  2445678888899999888877766543       223233457778888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcC
Q psy12719         72 MLQARGNVDEAIKLIEKAISID   93 (116)
Q Consensus        72 ~~~~~~~~~~a~~~~~~~~~~~   93 (116)
                      |++..|++...-....+.+...
T Consensus       166 Yyk~~~d~a~yYr~~L~YL~~~  187 (380)
T KOG2908|consen  166 YYKKIGDFASYYRHALLYLGCS  187 (380)
T ss_pred             HHHHHHhHHHHHHHHHHHhccc
Confidence            8887888887776666665543

>PF13041 PPR_2: PPR repeat family

Probab=91.41  E-value=0.62  Score=19.97  Aligned_cols=27  Identities=11%  Similarity=0.181  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHhhcChhhHHHHHHHHhc
Q psy12719         30 ACTLFAQVLVDQEDFDGAEEYFNRSIR   56 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~   56 (116)
                      .|..+-..+.+.|++++|.+.|++..+
T Consensus         5 ~yn~li~~~~~~~~~~~a~~l~~~M~~   31 (50)
T PF13041_consen    5 TYNTLISGYCKAGKFEEALKLFKEMKK   31 (50)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            344444455555555555555555544

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=91.37  E-value=3.9  Score=29.10  Aligned_cols=88  Identities=24%  Similarity=0.189  Sum_probs=63.3

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC--C-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE--N-------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC--   96 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--   96 (116)
                      +..-...+.......++.+|.....++...-|.  .       ....-..|.+... .|++++++...+.++..-|..  
T Consensus       415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~-~~~~e~a~~lar~al~~L~~~~~  493 (894)
T COG2909         415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALN-RGDPEEAEDLARLALVQLPEAAY  493 (894)
T ss_pred             chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhcccccc
Confidence            344556677777899999999998887765444  1       2233345555556 799999999999999987754  


Q ss_pred             ---HHHHHHHHHHHHhhcccccC
Q psy12719         97 ---MFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        97 ---~~~~~~l~~~~~~~~~~~~a  116 (116)
                         ..+...++.+..-.|++++|
T Consensus       494 ~~r~~~~sv~~~a~~~~G~~~~A  516 (894)
T COG2909         494 RSRIVALSVLGEAAHIRGELTQA  516 (894)
T ss_pred             hhhhhhhhhhhHHHHHhchHHHH
Confidence               45667777777777777653

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.37  E-value=2.8  Score=27.44  Aligned_cols=32  Identities=19%  Similarity=0.223  Sum_probs=26.7

Q ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12719         59 PENASLYVHRAMLMLQARGNVDEAIKLIEKAIS   91 (116)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   91 (116)
                      .+++..|..+|...+. .|+++-|+++++++-.
T Consensus       344 ~~~~~~W~~Lg~~AL~-~g~~~lAe~c~~k~~d  375 (443)
T PF04053_consen  344 LDDPEKWKQLGDEALR-QGNIELAEECYQKAKD  375 (443)
T ss_dssp             CSTHHHHHHHHHHHHH-TTBHHHHHHHHHHCT-
T ss_pred             cCcHHHHHHHHHHHHH-cCCHHHHHHHHHhhcC
Confidence            3567899999999888 8999999999987643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0546|consensus

Probab=91.34  E-value=0.54  Score=29.50  Aligned_cols=65  Identities=9%  Similarity=0.019  Sum_probs=51.3

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML   71 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   71 (116)
                      .+.+..|+..-..+++.++....+++..+..+....++++|.+.+..+....|.+....-.+...
T Consensus       288 ~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~  352 (372)
T KOG0546|consen  288 VKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV  352 (372)
T ss_pred             ccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence            34455555555556667777788999999999999999999999999999999998766555444

>KOG4151|consensus

Probab=91.10  E-value=2.1  Score=29.74  Aligned_cols=95  Identities=13%  Similarity=0.099  Sum_probs=68.9

Q ss_pred             chhcHHHHHHHHHHHHhhCCCh----hHHHHHHHHHHH--hhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNV----VEACTLFAQVLV--DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV   79 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   79 (116)
                      +.+++..+.--|..++..-|.+    .....+.+.+++  ..+++..++.-..-++...|....++...+.+|.. .+.+
T Consensus        65 ~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a-l~k~  143 (748)
T KOG4151|consen   65 QKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA-LNKL  143 (748)
T ss_pred             hhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH-HHHH
Confidence            3455666655566666666633    233444555444  67889999999999999999999999999999776 7888


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHH
Q psy12719         80 DEAIKLIEKAISIDKSCMFAYE  101 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~  101 (116)
                      +-|++.+.-.....|+.+.+-.
T Consensus       144 d~a~rdl~i~~~~~p~~~~~~e  165 (748)
T KOG4151|consen  144 DLAVRDLRIVEKMDPSNVSASE  165 (748)
T ss_pred             HHHHHHHHHHhcCCCCcchHHH
Confidence            9999997777778888754433

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=90.93  E-value=2.5  Score=26.11  Aligned_cols=66  Identities=21%  Similarity=0.379  Sum_probs=55.5

Q ss_pred             CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12719         25 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE----NASLYVHRAMLMLQARGNVDEAIKLIEKAIS   91 (116)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   91 (116)
                      ......|...+.+..+.|.++-|...+.++...++.    .+.+.+..+..+.. .|+..+|+..++..+.
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~-~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA-QGEQEEAIQKLRELLK  212 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence            344678899999999999999999999999886532    46677888888777 8999999999988887

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.57  E-value=0.8  Score=22.02  Aligned_cols=33  Identities=9%  Similarity=0.221  Sum_probs=18.2

Q ss_pred             HHHHHHHHHhhcChhhHHHHHHHH-------hccCCCCHH
Q psy12719         31 CTLFAQVLVDQEDFDGAEEYFNRS-------IRVDPENAS   63 (116)
Q Consensus        31 ~~~~~~~~~~~~~~~~A~~~~~~a-------~~~~~~~~~   63 (116)
                      +...|.-+-..|++.+|+.+|+.+       +...|+++.
T Consensus         9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~   48 (75)
T cd02682           9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT   48 (75)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence            344455555666666666555554       444566654

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG1464|consensus

Probab=90.33  E-value=2  Score=26.39  Aligned_cols=49  Identities=8%  Similarity=0.228  Sum_probs=41.2

Q ss_pred             hcHHHHHHHHHHHHhhCCChh----HHHHHHHHHHHhhcChhhHHHHHHHHhc
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVV----EACTLFAQVLVDQEDFDGAEEYFNRSIR   56 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~a~~   56 (116)
                      .+.++|+..|++.+++.|.-.    .++..+-.+.++.+++++.++.|.+.+.
T Consensus        41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT   93 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT   93 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            468899999999999987754    3667788899999999999999988764

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=90.13  E-value=4.4  Score=27.63  Aligned_cols=87  Identities=10%  Similarity=0.124  Sum_probs=60.3

Q ss_pred             cchhcHHHHHHHHHHHHhhCCC--hhH----HHHHHHHHHHhhcChhhHHHHHHHHhccCCC----CHHHHHHHH--HHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSN--VVE----ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE----NASLYVHRA--MLM   72 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~~--~~~   72 (116)
                      ....+++.|+.++++++.+...  ..+    +...++.++.+.+... |...+++.++....    .+...+.+-  ...
T Consensus        71 ~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~  149 (608)
T PF10345_consen   71 EETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLA  149 (608)
T ss_pred             HHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            4567899999999999888743  222    3456678887777776 99999999876544    222223332  222


Q ss_pred             HHhcCCHHHHHHHHHHHHhcC
Q psy12719         73 LQARGNVDEAIKLIEKAISID   93 (116)
Q Consensus        73 ~~~~~~~~~a~~~~~~~~~~~   93 (116)
                      .. .+++..|.+.++......
T Consensus       150 ~~-~~d~~~Al~~L~~~~~~a  169 (608)
T PF10345_consen  150 LQ-HKDYNAALENLQSIAQLA  169 (608)
T ss_pred             Hh-cccHHHHHHHHHHHHHHh
Confidence            23 379999999999888764

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=89.92  E-value=1.8  Score=22.94  Aligned_cols=72  Identities=17%  Similarity=0.208  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHhhCCCh---------hHHHHHHHHHHHhhcChhhHHHHHHHHhc--cCCCCHHHHHHHHHHHHHhcCCHH
Q psy12719         12 QSLKEFRNFVDTHSNV---------VEACTLFAQVLVDQEDFDGAEEYFNRSIR--VDPENASLYVHRAMLMLQARGNVD   80 (116)
Q Consensus        12 ~A~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~   80 (116)
                      .-...+++++....++         ..+|..++.      ...++.+.|..+..  +....+..|...|..+.. .|++.
T Consensus        44 ~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~------~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~-~~~~~  116 (126)
T PF08311_consen   44 GLLELLERCIRKFKDDERYKNDERYLKIWIKYAD------LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEK-RGNFK  116 (126)
T ss_dssp             HHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT------TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHH-TT-HH
T ss_pred             HHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH------HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHH-cCCHH
Confidence            3345666666555333         223444433      22378888877765  456778888889998776 89999


Q ss_pred             HHHHHHHHHH
Q psy12719         81 EAIKLIEKAI   90 (116)
Q Consensus        81 ~a~~~~~~~~   90 (116)
                      +|.+.++.++
T Consensus       117 ~A~~I~~~Gi  126 (126)
T PF08311_consen  117 KADEIYQLGI  126 (126)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhC
Confidence            9999998875

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=89.89  E-value=2.8  Score=24.95  Aligned_cols=70  Identities=17%  Similarity=0.200  Sum_probs=54.1

Q ss_pred             HHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHH
Q psy12719         37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYETLGTIE  107 (116)
Q Consensus        37 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~  107 (116)
                      -+.+.+..++++...+.-++-.|.+......+-..++- .|++++|...++-+-.+.|++   ...|..+-.+.
T Consensus        10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcv-aGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e   82 (273)
T COG4455          10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCV-AGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE   82 (273)
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhh-cchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence            34567888899999998899999888877777777676 799999999998888888876   34455555444

>KOG0985|consensus

Probab=89.84  E-value=5.7  Score=29.33  Aligned_cols=49  Identities=20%  Similarity=0.135  Sum_probs=33.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         60 ENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      +.+.+|..+|.+.++ .+...+|++.|-++     ++|..+.....+..+.|.++
T Consensus      1102 n~p~vWsqlakAQL~-~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQ-GGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred             CChHHHHHHHHHHHh-cCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHH
Confidence            457789999999888 89999999988655     34444555555544444443

>KOG2114|consensus

Probab=89.51  E-value=4  Score=28.97  Aligned_cols=30  Identities=23%  Similarity=0.386  Sum_probs=26.2

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHhcc
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRV   57 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~   57 (116)
                      ...+..+|..+++.|++++|...|-+.+..
T Consensus       368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  368 AEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            457788999999999999999999988864

>KOG0276|consensus

Probab=89.39  E-value=3.1  Score=28.47  Aligned_cols=64  Identities=19%  Similarity=0.193  Sum_probs=42.0

Q ss_pred             ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC--------CCCHH------------HHHHHHHHHHHhcCCHHHHHHH
Q psy12719         26 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--------PENAS------------LYVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~------------~~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      ++..-|..+|......+++..|.+++.++-...        ..+..            -..+++...+...|+++++.+.
T Consensus       664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~l  743 (794)
T KOG0276|consen  664 NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLEL  743 (794)
T ss_pred             cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHH
Confidence            445568899999999999999999998875432        11222            1233443333337888888777


Q ss_pred             HHHH
Q psy12719         86 IEKA   89 (116)
Q Consensus        86 ~~~~   89 (116)
                      +.+.
T Consensus       744 Li~t  747 (794)
T KOG0276|consen  744 LIST  747 (794)
T ss_pred             HHhc
Confidence            6544

>KOG3783|consensus

Probab=89.30  E-value=4.9  Score=26.97  Aligned_cols=66  Identities=20%  Similarity=0.157  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHhhcChhhHHHHHHHHhcc---CC----CCHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCc
Q psy12719         30 ACTLFAQVLVDQEDFDGAEEYFNRSIRV---DP----ENASLYVHRAMLMLQARGN-VDEAIKLIEKAISIDKSC   96 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~----~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~   96 (116)
                      .++.+|.++...|+...|..+|......   ..    -.|-++|.+|..+.. ++. ..++..++.+|-+...+.
T Consensus       451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~-~~g~~~e~~~~L~kAr~~~~dY  524 (546)
T KOG3783|consen  451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWD-LGGGLKEARALLLKAREYASDY  524 (546)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh-cccChHHHHHHHHHHHhhcccc
Confidence            4677899999999999999999887732   11    226789999999888 566 999999999998877554

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=89.27  E-value=0.75  Score=17.54  Aligned_cols=26  Identities=15%  Similarity=0.171  Sum_probs=15.2

Q ss_pred             HHHHHHHHHhhcChhhHHHHHHHHhc
Q psy12719         31 CTLFAQVLVDQEDFDGAEEYFNRSIR   56 (116)
Q Consensus        31 ~~~~~~~~~~~~~~~~A~~~~~~a~~   56 (116)
                      |..+-..+.+.|+++.|...++...+
T Consensus         4 y~~ll~a~~~~g~~~~a~~~~~~M~~   29 (34)
T PF13812_consen    4 YNALLRACAKAGDPDAALQLFDEMKE   29 (34)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            44455556666666666666665443

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=89.20  E-value=2.4  Score=23.15  Aligned_cols=56  Identities=25%  Similarity=0.287  Sum_probs=39.1

Q ss_pred             HHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12719         37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID   93 (116)
Q Consensus        37 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   93 (116)
                      ....+|+-+.--+.++...+....++..+..+|.+|-+ .|+..++-+.+.++-+..
T Consensus        95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~k-lg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKK-LGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHTT
T ss_pred             HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH-hcchhhHHHHHHHHHHhc
Confidence            34567777777777777777677789999999999766 899999999999987754

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=89.07  E-value=3.5  Score=24.91  Aligned_cols=67  Identities=27%  Similarity=0.328  Sum_probs=46.4

Q ss_pred             ChhHHHHHHHHHHHhhcChhhHHHHHHHH----------------hccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12719         26 NVVEACTLFAQVLVDQEDFDGAEEYFNRS----------------IRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA   89 (116)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   89 (116)
                      ++++.+..+|..+.+.+++.+|..+|-..                ..-.|.....+..++...+--.++...|...+...
T Consensus        88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f  167 (260)
T PF04190_consen   88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF  167 (260)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            56789999999999999999998777332                12345566677777766665579999998877666


Q ss_pred             Hhc
Q psy12719         90 ISI   92 (116)
Q Consensus        90 ~~~   92 (116)
                      .+.
T Consensus       168 ~~~  170 (260)
T PF04190_consen  168 TSK  170 (260)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            655

; PDB: 3LKU_E 2WPV_G.

>smart00671 SEL1 Sel1-like repeats

Probab=88.93  E-value=0.85  Score=17.70  Aligned_cols=14  Identities=21%  Similarity=0.472  Sum_probs=7.5

Q ss_pred             CHHHHHHHHHHHHh
Q psy12719         78 NVDEAIKLIEKAIS   91 (116)
Q Consensus        78 ~~~~a~~~~~~~~~   91 (116)
                      +..+|..+++++.+
T Consensus        20 d~~~A~~~~~~Aa~   33 (36)
T smart00671       20 DLEKALEYYKKAAE   33 (36)
T ss_pred             CHHHHHHHHHHHHH
Confidence            55555555555543

These represent a subfamily of TPR (tetratricopeptide repeat) sequences.

>KOG3807|consensus

Probab=88.28  E-value=4.9  Score=25.62  Aligned_cols=78  Identities=13%  Similarity=0.078  Sum_probs=52.6

Q ss_pred             HHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------------
Q psy12719         36 QVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK---------------------   94 (116)
Q Consensus        36 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---------------------   94 (116)
                      +...+..+..+-++....++.++|..+.++..++.-  . ..-..+|.+.++++++...                     
T Consensus       192 Q~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--E-a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~r  268 (556)
T KOG3807|consen  192 QKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--E-ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLR  268 (556)
T ss_pred             HHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--h-hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhh
Confidence            333456667777888889999999999999888764  2 3455667777777765311                     


Q ss_pred             Cc----HHHHHHHHHHHHhhcccccC
Q psy12719         95 SC----MFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        95 ~~----~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .+    ......++.|..++|+..+|
T Consensus       269 RDtnvl~YIKRRLAMCARklGrlrEA  294 (556)
T KOG3807|consen  269 RDTNVLVYIKRRLAMCARKLGRLREA  294 (556)
T ss_pred             cccchhhHHHHHHHHHHHHhhhHHHH
Confidence            01    22345678888888877653

>KOG0276|consensus

Probab=88.27  E-value=6.5  Score=27.10  Aligned_cols=93  Identities=9%  Similarity=-0.002  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12719         10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA   89 (116)
Q Consensus        10 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   89 (116)
                      |-+...+.++++...++... .+.+   ..+.|+++.|.....+     .++..-|-.+|...+. .+++..|.+++.++
T Consensus       623 Fle~~g~~e~AL~~s~D~d~-rFel---al~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~-~~~l~lA~EC~~~a  692 (794)
T KOG0276|consen  623 FLESQGMKEQALELSTDPDQ-RFEL---ALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALS-AGELPLASECFLRA  692 (794)
T ss_pred             HhhhccchHhhhhcCCChhh-hhhh---hhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhh-cccchhHHHHHHhh
Confidence            33444455556655554321 2222   2356666666554433     3566779999999887 89999999999998


Q ss_pred             Hhc--------CCCcHHHHHHHHHHHHhhcc
Q psy12719         90 ISI--------DKSCMFAYETLGTIEVQRTF  112 (116)
Q Consensus        90 ~~~--------~~~~~~~~~~l~~~~~~~~~  112 (116)
                      ...        ..++.+.+..+|.....+|+
T Consensus       693 ~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~  723 (794)
T KOG0276|consen  693 RDLGSLLLLYTSSGNAEGLAVLASLAKKQGK  723 (794)
T ss_pred             cchhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence            765        22444555555555444443

>KOG2581|consensus

Probab=88.19  E-value=1.4  Score=28.46  Aligned_cols=55  Identities=22%  Similarity=0.250  Sum_probs=34.8

Q ss_pred             hhcHHHHHHHHHHHHhhC--C--ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC
Q psy12719          7 RERVEQSLKEFRNFVDTH--S--NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN   61 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~   61 (116)
                      .+.|+.|.....+..--.  .  ..++..+.+|.+..-+.+|..|.+++-+|+...|++
T Consensus       222 n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  222 NKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             hHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            345566655555543111  1  124456677888888888888888888888888764

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=88.10  E-value=6.5  Score=26.83  Aligned_cols=59  Identities=15%  Similarity=0.106  Sum_probs=44.7

Q ss_pred             ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12719         26 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE   87 (116)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   87 (116)
                      .++...+..+..+-.-+..+.|-.+|++.+..+|+  ..++..+..+++ .|-...|...+.
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~   98 (578)
T PRK15490         40 LTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYN-TGLAKDAQLILK   98 (578)
T ss_pred             hhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHh-hhhhhHHHHHHH
Confidence            34555666777888889999999999999999988  455666666566 677777777766

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing

Probab=88.00  E-value=1.1  Score=17.73  Aligned_cols=26  Identities=19%  Similarity=0.368  Sum_probs=15.0

Q ss_pred             cHHHHHHHHHHHHhhCCChhHHHHHHH
Q psy12719          9 RVEQSLKEFRNFVDTHSNVVEACTLFA   35 (116)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~   35 (116)
                      +++.|..+|++.+...|+ +..|...|
T Consensus         2 E~dRAR~IyeR~v~~hp~-~k~WikyA   27 (32)
T PF02184_consen    2 EFDRARSIYERFVLVHPE-VKNWIKYA   27 (32)
T ss_pred             hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence            456666666666666554 44455444

They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular

>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane

Probab=87.93  E-value=2.4  Score=22.46  Aligned_cols=27  Identities=30%  Similarity=0.588  Sum_probs=12.2

Q ss_pred             HHHHHHhhcChhhHHHHHHHHhccCCC
Q psy12719         34 FAQVLVDQEDFDGAEEYFNRSIRVDPE   60 (116)
Q Consensus        34 ~~~~~~~~~~~~~A~~~~~~a~~~~~~   60 (116)
                      +|..+...|++++|..+|-.|+...|+
T Consensus        69 lGE~L~~~G~~~~aa~hf~nAl~V~~q   95 (121)
T PF02064_consen   69 LGEQLLAQGDYEEAAEHFYNALKVCPQ   95 (121)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence            444444444444444444444444444

Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.

>KOG0890|consensus

Probab=87.78  E-value=13  Score=29.90  Aligned_cols=63  Identities=16%  Similarity=0.169  Sum_probs=56.0

Q ss_pred             hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         27 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      ..+.|...|++....|+++.|..+.-.|.+..  -+.++...|..+.. .|+-..|+..+++.++.
T Consensus      1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~-~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQ-TGDELNALSVLQEILSK 1731 (2382)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHh-hccHHHHHHHHHHHHHh
Confidence            36799999999999999999999998887765  66788899999888 89999999999999965

>PF13226 DUF4034: Domain of unknown function (DUF4034)

Probab=87.56  E-value=4.8  Score=24.70  Aligned_cols=68  Identities=15%  Similarity=0.161  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhhCCChhHHHHHHHHHHHhhc----------------------ChhhHHHHHHHHhccCCCCHHHHHHHH
Q psy12719         12 QSLKEFRNFVDTHSNVVEACTLFAQVLVDQE----------------------DFDGAEEYFNRSIRVDPENASLYVHRA   69 (116)
Q Consensus        12 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~   69 (116)
                      ...+.++.-++.+|++..++..+|..+....                      -.+.|...+.+++.++|+...+...+-
T Consensus        61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~  140 (277)
T PF13226_consen   61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI  140 (277)
T ss_pred             hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            4567778888999999988888888776421                      346778888999999999988777666


Q ss_pred             HHHHHhcCCHH
Q psy12719         70 MLMLQARGNVD   80 (116)
Q Consensus        70 ~~~~~~~~~~~   80 (116)
                      .+.-. .|.++
T Consensus       141 ~~s~~-fgeP~  150 (277)
T PF13226_consen  141 NISAY-FGEPD  150 (277)
T ss_pred             HHHhh-cCCch
Confidence            55333 45443

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=87.30  E-value=9.3  Score=27.79  Aligned_cols=54  Identities=11%  Similarity=0.065  Sum_probs=42.6

Q ss_pred             cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHH
Q psy12719          9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS   63 (116)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~   63 (116)
                      .+.+|+..|++. .-.|.-+-=+.+.|.+|.+.|++++-++++.-+++..|+.|.
T Consensus       534 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (932)
T PRK13184        534 DFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE  587 (932)
T ss_pred             HHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence            466666666653 233555666888999999999999999999999999988765

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=87.23  E-value=4.5  Score=24.96  Aligned_cols=93  Identities=9%  Similarity=0.069  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHhhCCChhHHHHHHHHHHHhh--cChhhHHHHHHHHhccCCCCHHHHHHHHHHH------HHhcCCHHH
Q psy12719         10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ--EDFDGAEEYFNRSIRVDPENASLYVHRAMLM------LQARGNVDE   81 (116)
Q Consensus        10 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~------~~~~~~~~~   81 (116)
                      ++.-++.+..+++.+|.+-.+|.-.-.++..-  ..+..-....++.+..++++-..|..+-.+.      .. -..+..
T Consensus        90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N-~S~~k~  168 (328)
T COG5536          90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFN-FSDLKH  168 (328)
T ss_pred             hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhcc-chhHHH
Confidence            34456778888888999988877766655433  5577777888899999999987766444332      11 223344


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHH
Q psy12719         82 AIKLIEKAISIDKSCMFAYETL  103 (116)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~l  103 (116)
                      -.++-...+..++.+..+|...
T Consensus       169 e~eytt~~I~tdi~N~SaW~~r  190 (328)
T COG5536         169 ELEYTTSLIETDIYNNSAWHHR  190 (328)
T ss_pred             HHHhHHHHHhhCCCChHHHHHH
Confidence            4666677788888888888776

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=87.23  E-value=6.8  Score=26.11  Aligned_cols=53  Identities=11%  Similarity=0.036  Sum_probs=28.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhc
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR   56 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~   56 (116)
                      +..+|++..|-.+|+-.+..+|+++..-...-..+...++-..|...|++++.
T Consensus       442 ~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~  494 (660)
T COG5107         442 YYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVE  494 (660)
T ss_pred             HHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence            34455556666666666666666554433344444455555666666665543

>KOG0890|consensus

Probab=87.05  E-value=5.8  Score=31.54  Aligned_cols=81  Identities=4%  Similarity=-0.059  Sum_probs=40.4

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      ...|+|..|..+|++++..+|+....+.+.-......+.+...+-..+-.....++...-+..++.-.--..++++.-.+
T Consensus      1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred             HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence            34566666666666666666665544444445555555555555555544444444444444443321111444444443


Q ss_pred             H
Q psy12719         85 L   85 (116)
Q Consensus        85 ~   85 (116)
                      .
T Consensus      1540 ~ 1540 (2382)
T KOG0890|consen 1540 Y 1540 (2382)
T ss_pred             h
Confidence            3

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=86.96  E-value=2.1  Score=19.92  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=13.2

Q ss_pred             HHHHHHHhhcChhhHHHHHHHHh
Q psy12719         33 LFAQVLVDQEDFDGAEEYFNRSI   55 (116)
Q Consensus        33 ~~~~~~~~~~~~~~A~~~~~~a~   55 (116)
                      ..|.-.-..|++++|+.+|..++
T Consensus        10 ~~Av~~D~~g~~~~A~~~Y~~ai   32 (69)
T PF04212_consen   10 KKAVEADEAGNYEEALELYKEAI   32 (69)
T ss_dssp             HHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH
Confidence            33444445666666666666655

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=86.71  E-value=2.4  Score=25.22  Aligned_cols=49  Identities=14%  Similarity=0.297  Sum_probs=35.3

Q ss_pred             hhhHHHHHHHHhc-----cCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         44 FDGAEEYFNRSIR-----VDPENAS---LYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        44 ~~~A~~~~~~a~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      .+.|...|++|+.     +.|.+|.   ...+.+..++...|+.++|++..++++..
T Consensus       142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~  198 (236)
T PF00244_consen  142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE  198 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            3567777877764     3566654   45677777788899999999998888764

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=85.96  E-value=8.9  Score=26.26  Aligned_cols=83  Identities=18%  Similarity=0.238  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHhhCCCh----hHHHHHHHHHHH-hhcChhhHHHHHHHHhccCCC--CH----HHHHHHHHHHHHhcCCH
Q psy12719         11 EQSLKEFRNFVDTHSNV----VEACTLFAQVLV-DQEDFDGAEEYFNRSIRVDPE--NA----SLYVHRAMLMLQARGNV   79 (116)
Q Consensus        11 ~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~--~~----~~~~~~~~~~~~~~~~~   79 (116)
                      ..|+.+++-+++..+-.    ..+++.+|.++. ...+++.|..++.+++.+..+  ..    .+.+.++.++.+ .+..
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~-~~~~  116 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK-TNPK  116 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-cCHH
Confidence            45677777777433222    457888999877 789999999999999877643  22    234566777555 4444


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy12719         80 DEAIKLIEKAISIDKS   95 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~   95 (116)
                      . |...+.+.++...+
T Consensus       117 ~-a~~~l~~~I~~~~~  131 (608)
T PF10345_consen  117 A-ALKNLDKAIEDSET  131 (608)
T ss_pred             H-HHHHHHHHHHHHhc
Confidence            4 99999998876544

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.77  E-value=1.8  Score=20.80  Aligned_cols=16  Identities=19%  Similarity=0.607  Sum_probs=9.3

Q ss_pred             hcChhhHHHHHHHHhc
Q psy12719         41 QEDFDGAEEYFNRSIR   56 (116)
Q Consensus        41 ~~~~~~A~~~~~~a~~   56 (116)
                      .|++++|..+|..++.
T Consensus        19 ~~~y~eA~~~Y~~~i~   34 (75)
T cd02677          19 EGDYEAAFEFYRAGVD   34 (75)
T ss_pred             HhhHHHHHHHHHHHHH
Confidence            3666666666655543

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=85.29  E-value=7.5  Score=24.78  Aligned_cols=95  Identities=13%  Similarity=0.001  Sum_probs=54.5

Q ss_pred             cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC--CCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719          9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--PENASLYVHRAMLMLQARGNVDEAIKLI   86 (116)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~   86 (116)
                      +|..-..+|.......|+ +.+-.+.+.......-...+....+......  ...-..+...|..+.+ +|+.++|...|
T Consensus       311 DW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~r-Lgr~~eAr~ay  388 (415)
T COG4941         311 DWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLAR-LGRVEEARAAY  388 (415)
T ss_pred             ChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHH-hCChHHHHHHH
Confidence            344444444444444433 3344455555444444455555554443321  1222345667777555 99999999999


Q ss_pred             HHHHhcCCCcHHHHHHHHH
Q psy12719         87 EKAISIDKSCMFAYETLGT  105 (116)
Q Consensus        87 ~~~~~~~~~~~~~~~~l~~  105 (116)
                      ++++.+.++..+..+....
T Consensus       389 drAi~La~~~aer~~l~~r  407 (415)
T COG4941         389 DRAIALARNAAERAFLRQR  407 (415)
T ss_pred             HHHHHhcCChHHHHHHHHH
Confidence            9999998887665544443

>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins

Probab=85.04  E-value=3.7  Score=21.08  Aligned_cols=47  Identities=19%  Similarity=0.272  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcc
Q psy12719         65 YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTF  112 (116)
Q Consensus        65 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  112 (116)
                      ....|...+. .|++..|.+.+.++-+..+..+-.+..-+.+-..+||
T Consensus        62 al~~Gl~al~-~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd  108 (108)
T PF07219_consen   62 ALSRGLIALA-EGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD  108 (108)
T ss_pred             HHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence            3455666566 7888888888888876655555445555555555543

These are membrane protein involved in a late step of protoheme IX synthesis [].

>KOG3616|consensus

Probab=84.99  E-value=12  Score=26.85  Aligned_cols=75  Identities=17%  Similarity=0.119  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHH
Q psy12719         30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-MFAYETLGTIEV  108 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~  108 (116)
                      .+...+.-|...|+|+-|.+.|.++=..        .....+|-+ .|++++|.+.-.++.  .|.. ...+...+.-+-
T Consensus       767 yy~~iadhyan~~dfe~ae~lf~e~~~~--------~dai~my~k-~~kw~da~kla~e~~--~~e~t~~~yiakaedld  835 (1636)
T KOG3616|consen  767 YYGEIADHYANKGDFEIAEELFTEADLF--------KDAIDMYGK-AGKWEDAFKLAEECH--GPEATISLYIAKAEDLD  835 (1636)
T ss_pred             cchHHHHHhccchhHHHHHHHHHhcchh--------HHHHHHHhc-cccHHHHHHHHHHhc--CchhHHHHHHHhHHhHH
Confidence            3455667777777777777777554211        111222223 566666655554442  2322 233444444455


Q ss_pred             hhccccc
Q psy12719        109 QRTFVVL  115 (116)
Q Consensus       109 ~~~~~~~  115 (116)
                      .+|++.+
T Consensus       836 ehgkf~e  842 (1636)
T KOG3616|consen  836 EHGKFAE  842 (1636)
T ss_pred             hhcchhh
Confidence            5555544

>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH

Probab=84.53  E-value=2.7  Score=24.15  Aligned_cols=38  Identities=29%  Similarity=0.446  Sum_probs=30.1

Q ss_pred             HHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHH
Q psy12719         33 LFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML   71 (116)
Q Consensus        33 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   71 (116)
                      ....++.+.|.+++|.+.+++... +|++......+..+
T Consensus       116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I  153 (200)
T cd00280         116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI  153 (200)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence            345578899999999999999998 88877666666655

Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.

>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []

Probab=84.34  E-value=1.9  Score=17.06  Aligned_cols=12  Identities=42%  Similarity=0.457  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHH
Q psy12719         79 VDEAIKLIEKAI   90 (116)
Q Consensus        79 ~~~a~~~~~~~~   90 (116)
                      +++|..+++++.
T Consensus        24 ~~~A~~~~~~Aa   35 (39)
T PF08238_consen   24 YEKAFKWYEKAA   35 (39)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             ccchHHHHHHHH
Confidence            444555554443

Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.

>smart00101 14_3_3 14-3-3 homologues

Probab=83.94  E-value=7.2  Score=23.47  Aligned_cols=49  Identities=12%  Similarity=0.179  Sum_probs=36.1

Q ss_pred             hhhHHHHHHHHhc-----cCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         44 FDGAEEYFNRSIR-----VDPENAS---LYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        44 ~~~A~~~~~~a~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      .+.|...|+.|..     +.|.+|.   ...+.+..++...++.++|++..++++..
T Consensus       144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~  200 (244)
T smart00101      144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE  200 (244)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4577888888765     4466654   45677788888899999999888777654

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>KOG2422|consensus

Probab=83.74  E-value=12  Score=25.74  Aligned_cols=90  Identities=10%  Similarity=0.085  Sum_probs=56.1

Q ss_pred             cchhcHHHHHHHHHHHHhhCCC-hhHHHHHHHHHH-HhhcChhhHHHHHHHHh-----ccCCCCHHHHHHHHHHHHHhcC
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSN-VVEACTLFAQVL-VDQEDFDGAEEYFNRSI-----RVDPENASLYVHRAMLMLQARG   77 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~-----~~~~~~~~~~~~~~~~~~~~~~   77 (116)
                      .+.|.+..|.++.+-.+.++|. ++-+...+-.+| .+..+|+=-++.++..-     ..-|+.+ .-..++..++....
T Consensus       353 ~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l~~~~  431 (665)
T KOG2422|consen  353 AQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG-YSLALARFFLRKNE  431 (665)
T ss_pred             HhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHHHHHhcCC
Confidence            4568899999999999999998 665544444444 46666766666655542     2233322 23344555444222


Q ss_pred             --CHHHHHHHHHHHHhcCCC
Q psy12719         78 --NVDEAIKLIEKAISIDKS   95 (116)
Q Consensus        78 --~~~~a~~~~~~~~~~~~~   95 (116)
                        ....|...+.+|+...|.
T Consensus       432 ~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  432 EDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             hhhHHHHHHHHHHHHHhCcH
Confidence              256777888888888773

>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []

Probab=82.66  E-value=6.2  Score=25.53  Aligned_cols=14  Identities=36%  Similarity=0.354  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHhc
Q psy12719         79 VDEAIKLIEKAISI   92 (116)
Q Consensus        79 ~~~a~~~~~~~~~~   92 (116)
                      |.+|...+.+|-..
T Consensus       378 Y~eAE~iL~kAN~a  391 (404)
T PF12753_consen  378 YKEAEKILKKANKA  391 (404)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhc
Confidence            55566666655443

In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=82.53  E-value=6.1  Score=21.64  Aligned_cols=104  Identities=12%  Similarity=0.087  Sum_probs=56.0

Q ss_pred             hhcHHHHHHHHHHHHhhCCChh------------------HHHHHHHHHH--HhhcChhhHHHHHHHHhccCCCCHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVV------------------EACTLFAQVL--VDQEDFDGAEEYFNRSIRVDPENASLYV   66 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~------------------~~~~~~~~~~--~~~~~~~~A~~~~~~a~~~~~~~~~~~~   66 (116)
                      .|..++..+...+.+...+-..                  .++-.+|..+  ...|+....+.++-.   .+..+.  +.
T Consensus        15 dG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~---~n~~se--~v   89 (161)
T PF09205_consen   15 DGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAK---RNKLSE--YV   89 (161)
T ss_dssp             TT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHH---TT---H--HH
T ss_pred             hchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHH---hcchHH--HH
Confidence            3566777777777776654321                  1222334332  246677777777754   333333  33


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         67 HRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        67 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      .++.-.+-.+|.-++-.+.+......+..+|..+..+|.+|...|+..+
T Consensus        90 D~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~  138 (161)
T PF09205_consen   90 DLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTRE  138 (161)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhh
Confidence            4444334337888887788887776666778899999999999887654

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.29  E-value=4.2  Score=19.60  Aligned_cols=24  Identities=13%  Similarity=0.181  Sum_probs=14.5

Q ss_pred             HHHHHHHhhcChhhHHHHHHHHhc
Q psy12719         33 LFAQVLVDQEDFDGAEEYFNRSIR   56 (116)
Q Consensus        33 ~~~~~~~~~~~~~~A~~~~~~a~~   56 (116)
                      ..|.-.-..|++++|+.+|..++.
T Consensus        11 ~~Ave~D~~g~y~eA~~~Y~~aie   34 (76)
T cd02681          11 RLAVQRDQEGRYSEAVFYYKEAAQ   34 (76)
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHH
Confidence            344444466777777777766654

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.90  E-value=4  Score=19.69  Aligned_cols=20  Identities=20%  Similarity=0.237  Sum_probs=10.4

Q ss_pred             HHHHhhcChhhHHHHHHHHh
Q psy12719         36 QVLVDQEDFDGAEEYFNRSI   55 (116)
Q Consensus        36 ~~~~~~~~~~~A~~~~~~a~   55 (116)
                      .-.-..|++++|+.+|..++
T Consensus        14 ve~D~~g~y~eAl~~Y~~ai   33 (77)
T cd02683          14 VELDQEGRFQEALVCYQEGI   33 (77)
T ss_pred             HHHHHhccHHHHHHHHHHHH
Confidence            33345556655555555544

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG2041|consensus

Probab=81.67  E-value=14  Score=26.27  Aligned_cols=73  Identities=10%  Similarity=0.017  Sum_probs=38.8

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC--HHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN--ASLYVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      |+|++|++.|-.+-+.   +.     --.+....|+|-...+.++..-.-+.+.  ..++.++|..+.. +..+++|.++
T Consensus       748 g~feeaek~yld~drr---DL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~-~~~We~A~~y  818 (1189)
T KOG2041|consen  748 GEFEEAEKLYLDADRR---DL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAE-MMEWEEAAKY  818 (1189)
T ss_pred             cchhHhhhhhhccchh---hh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            5666666666443221   11     1123445666666665555433222222  4567777777555 6677777766


Q ss_pred             HHHH
Q psy12719         86 IEKA   89 (116)
Q Consensus        86 ~~~~   89 (116)
                      |...
T Consensus       819 Y~~~  822 (1189)
T KOG2041|consen  819 YSYC  822 (1189)
T ss_pred             HHhc
Confidence            6544

>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB)

Probab=81.59  E-value=9.5  Score=24.21  Aligned_cols=48  Identities=19%  Similarity=0.136  Sum_probs=40.8

Q ss_pred             hcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12719         41 QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA   89 (116)
Q Consensus        41 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   89 (116)
                      ....-+|+..++.++..+|.+......+..+|.. .|-.+.|...|...
T Consensus       196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~-LG~~~~A~~~~~~L  243 (365)
T PF09797_consen  196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSL-LGAGSLALEHYESL  243 (365)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHhc
Confidence            3445688888899999999999999999999887 89999999888543

The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].

>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane

Probab=81.37  E-value=6.3  Score=20.95  Aligned_cols=35  Identities=17%  Similarity=0.183  Sum_probs=27.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q psy12719         66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYE  101 (116)
Q Consensus        66 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  101 (116)
                      ..+|..+.. .|+++++...|-+++...|.-...+.
T Consensus        67 V~lGE~L~~-~G~~~~aa~hf~nAl~V~~qP~~LL~  101 (121)
T PF02064_consen   67 VQLGEQLLA-QGDYEEAAEHFYNALKVCPQPAELLQ  101 (121)
T ss_dssp             HHHHHHHHH-TT-HHHHHHHHHHHHHTSSSHHHHHH
T ss_pred             HHHHHHHHh-CCCHHHHHHHHHHHHHhCCCHHHHHH
Confidence            468888777 79999999999999999887654443

Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.

>KOG4279|consensus

Probab=81.05  E-value=18  Score=26.01  Aligned_cols=100  Identities=14%  Similarity=0.197  Sum_probs=57.2

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc-ChhhHHHHHHHHhccCC--------CCHHHHHH----HHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE-DFDGAEEYFNRSIRVDP--------ENASLYVH----RAM   70 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~--------~~~~~~~~----~~~   70 (116)
                      |.+.+..+.|+++|.++.+..|.... -.+++.++...| .++...+.-.-...++.        ....-|..    ++.
T Consensus       297 ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~a  375 (1226)
T KOG4279|consen  297 YTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEA  375 (1226)
T ss_pred             CcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhh
Confidence            45667889999999999999987533 234455444433 34444444333332221        11111222    222


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy12719         71 LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI  106 (116)
Q Consensus        71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  106 (116)
                      . .- .+++.++++..+...++.|-.......+..+
T Consensus       376 s-VL-And~~kaiqAae~mfKLk~P~WYLkS~meni  409 (1226)
T KOG4279|consen  376 S-VL-ANDYQKAIQAAEMMFKLKPPVWYLKSTMENI  409 (1226)
T ss_pred             h-hh-ccCHHHHHHHHHHHhccCCceehHHHHHHHH
Confidence            2 12 5899999999999998887654433344433

>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH

Probab=81.04  E-value=8.5  Score=22.25  Aligned_cols=33  Identities=18%  Similarity=0.214  Sum_probs=24.8

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy12719         73 LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE  107 (116)
Q Consensus        73 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  107 (116)
                      .+ .|.+++|.+.+++... +|++......|..+-
T Consensus       122 m~-~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II  154 (200)
T cd00280         122 ME-NGEFKKAEEVLKRLFS-DPESQKLRMKLLMII  154 (200)
T ss_pred             Hh-cCchHHHHHHHHHHhc-CCCchhHHHHHHHHH
Confidence            56 8999999999999988 777665555555443

Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.

>KOG0686|consensus

Probab=80.92  E-value=13  Score=24.36  Aligned_cols=63  Identities=17%  Similarity=0.209  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      .++..+|..|...|+++.|++.|.++-......   ...+.++-.+... .|++..-..+..++.+.
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~-~~nw~hv~sy~~~A~st  216 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIY-MGNWGHVLSYISKAEST  216 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHh-hcchhhhhhHHHHHHhC
Confidence            467889999999999999999999865554433   3445555555555 67776666665555443

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=80.81  E-value=16  Score=25.16  Aligned_cols=70  Identities=11%  Similarity=0.126  Sum_probs=50.3

Q ss_pred             HHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhh
Q psy12719         38 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR  110 (116)
Q Consensus        38 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  110 (116)
                      +.+....+.+....+.-+.....+....+..+..+.. .+..++|-.+|++.+..+|++  .+...+.-+...
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   87 (578)
T PRK15490         18 LKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHD-VNETERAYALYETLIAQNNDE--ARYEYARRLYNT   87 (578)
T ss_pred             HHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhh-hhhhHhHHHHHHHHHHhCCcc--hHHHHHHHHHhh
Confidence            3456677777777776666666666677777887555 799999999999999999985  344444444433

>KOG4279|consensus

Probab=80.73  E-value=3.8  Score=29.01  Aligned_cols=57  Identities=16%  Similarity=0.319  Sum_probs=44.1

Q ss_pred             cchhcHHHHHHHHHHHHhhC-CChhHHHHHHHHHHHh---------hcChhhHHHHHHHHhccCCCC
Q psy12719          5 GDRERVEQSLKEFRNFVDTH-SNVVEACTLFAQVLVD---------QEDFDGAEEYFNRSIRVDPEN   61 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~a~~~~~~~   61 (116)
                      ...|+-++|+...-.+++.. |..++.++.-|.+|..         .+..+.|+++|+++++..|..
T Consensus       254 Nr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~  320 (1226)
T KOG4279|consen  254 NRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE  320 (1226)
T ss_pred             CCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh
Confidence            45688899998888877655 5557788877887753         456678999999999998864

>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 []

Probab=80.73  E-value=16  Score=25.09  Aligned_cols=78  Identities=15%  Similarity=0.087  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHH--hhcChhhHHHHHHHHhccC-----CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC
Q psy12719         28 VEACTLFAQVLV--DQEDFDGAEEYFNRSIRVD-----PENASLYVHRAMLMLQARGNVDEAIKLIEKAISI------DK   94 (116)
Q Consensus        28 ~~~~~~~~~~~~--~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~   94 (116)
                      +.++.++|.+-.  ....-..+...|.+++...     -.....|..+|..+++ .+++.+|+..+..+-..      ..
T Consensus       277 PmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR-~~~~~eA~~~Wa~aa~Vi~~YnY~r  355 (618)
T PF05053_consen  277 PMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYR-HKRYREALRSWAEAADVIRKYNYSR  355 (618)
T ss_dssp             HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHTTSB--G
T ss_pred             chhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHH-HHHHHHHHHHHHHHHHHHHHcccCc
Confidence            556666666543  2333455677777776542     2345677888888888 89999999999888654      34


Q ss_pred             CcHHHHHHHHHH
Q psy12719         95 SCMFAYETLGTI  106 (116)
Q Consensus        95 ~~~~~~~~l~~~  106 (116)
                      ++.+.|..+-.+
T Consensus       356 eDeEiYKEfleI  367 (618)
T PF05053_consen  356 EDEEIYKEFLEI  367 (618)
T ss_dssp             GGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH
Confidence            556666654443

; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.

>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996

Probab=80.57  E-value=3.4  Score=17.43  Aligned_cols=32  Identities=16%  Similarity=0.115  Sum_probs=21.5

Q ss_pred             HHHHHHhhCCChhHHHHHHHHHHHhhcChhhH
Q psy12719         16 EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGA   47 (116)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A   47 (116)
                      .|..++..+|++...+..++..+...|+...|
T Consensus         4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra   35 (42)
T TIGR02996         4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA   35 (42)
T ss_pred             HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence            35566667777777777777777777766443

This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.

>KOG1464|consensus

Probab=80.55  E-value=11  Score=23.39  Aligned_cols=52  Identities=12%  Similarity=0.238  Sum_probs=41.1

Q ss_pred             hhcChhhHHHHHHHHhccCCCCH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         40 DQEDFDGAEEYFNRSIRVDPENA----SLYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        40 ~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      ...+.++|+..|++.+.+.+.-.    .++-.+..+.++ ++++++..+.+.+.+..
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~-l~~~~eMm~~Y~qlLTY   94 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFR-LGNYKEMMERYKQLLTY   94 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence            45588999999999999988653    356667777777 89999998888877653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	116
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		7e-07
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-06
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-05
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		5e-05
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		6e-05
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		2e-04
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		4e-04

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 10  VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 69
            +++++ ++  ++   N  EA          Q D+D A EY+ +++ +DP NA  + +  
Sbjct: 25  YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG 84
Query: 70  MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
               + +G+ DEAI+  +KA+ +D +   A + LG  + ++
Sbjct: 85  NAYYK-QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 25  SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK 84
            N  EA          Q D+D A EY+ +++ +DP NA  + +      + +G+ DEAI+
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIE 64
Query: 85  LIEKAISIDKSCMFAYETLGTIEVQR 110
             +KA+ +D +   A + LG  + ++
Sbjct: 65  YYQKALELDPNNAEAKQNLGNAKQKQ 90

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/96 (22%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 10  VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 69
            +++++ ++  ++      EA          Q D+D A EY+ +++ +DP +A  + +  
Sbjct: 17  YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76
Query: 70  MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGT 105
               + +G+ DEAI+  +KA+ +D     A+  LG 
Sbjct: 77  NAYYK-QGDYDEAIEYYQKALELDPRSAEAWYNLGN 111

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/101 (21%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 10  VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 69
            +++++ ++  ++ + N  EA          Q D+D A EY+ +++ + P NA  + +  
Sbjct: 25  YDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLG 84
Query: 70  MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
               + +G+ DEAI+  +KA+ +  +   A + LG  + ++
Sbjct: 85  NAYYK-QGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQ 124

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/101 (20%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 10  VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 69
            +++++ ++  ++   N   A          Q D+  A EY+ +++ +DP NA  +  R 
Sbjct: 25  YQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRG 84
Query: 70  MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
               + +G+  +AI+  +KA+ +D +   A + LG  + ++
Sbjct: 85  NAYYK-QGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQ 124

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 14/94 (14%)
Query: 24  HSNVVEACTLF---------AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML--M 72
           H ++ +A  LF         A ++ D+ D      YF++++++D  N+S+Y HR  +  +
Sbjct: 257 HEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316
Query: 73  LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           LQ   N D+A K  +KA  +D   +F Y  L  +
Sbjct: 317 LQ---NYDQAGKDFDKAKELDPENIFPYIQLACL 347

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 87
           EA          Q D+D A EY+ +++ +DP +A  + +      + +G+ DEAI+  +
Sbjct: 3  AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQ 61
Query: 88 KAISID 93
          KA+ +D
Sbjct: 62 KALELD 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	116
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-21
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-20
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-15
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-15
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-13
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-13
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-12
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-12
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-12
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-12
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-12
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-09
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	8e-12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-11
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	9e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-11
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	6e-11
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-10
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	8e-08
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	8e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-10
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	7e-11
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-10
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	8e-11
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-09
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-10
2kat_A	115	Uncharacterized protein; NESG, structure, structur	7e-08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	5e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-10
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-10
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-10
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-09
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-08
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-10
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-08
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-10
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	9e-09
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	3e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-10
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-07
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	6e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	9e-10
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	9e-10
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-09
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-09
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	9e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
2l6j_A	111	TPR repeat-containing protein associated with HSP;	4e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-09
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	7e-09
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-07
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	7e-09
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	6e-05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	7e-09
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	8e-09
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	3e-04
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	9e-09
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-06
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-08
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	3e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-08
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-08
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-08
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	7e-07
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	4e-08
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-08
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	6e-08
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-06
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-07
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	5e-07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	5e-07
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	8e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	3e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	6e-07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	6e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	3e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	1e-04
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	3e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	8e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	8e-04
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	8e-05
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	1e-04
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	4e-04
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	4e-04
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	5e-04
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 86.7 bits (215), Expect = 2e-21
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 8/111 (7%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
            + +     F           E    FA++L D+ DFD A + ++ +I ++ +   +YV 
Sbjct: 352 NKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVG 411

Query: 68  RAMLMLQAR--------GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
            A L+ +A          N  EA  L+EKA  +D     A   L  +++Q+
Sbjct: 412 IAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 66.7 bits (163), Expect = 2e-14
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 1/101 (0%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
           DR    +    F   +   SN         Q+    +++D A + F+++  +DPEN   Y
Sbjct: 282 DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPY 341

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           +  A L        D+   L  +A                I
Sbjct: 342 IQLACL-AYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEI 381

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 65.1 bits (159), Expect = 7e-14
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           A ++ D+ D      YF++++++D  N+S+Y HR   M     N D+A K  +KA  +D 
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRG-QMNFILQNYDQAGKDFDKAKELDP 335

Query: 95  SCMFAYETLGTI 106
             +F Y  L  +
Sbjct: 336 ENIFPYIQLACL 347

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 65.1 bits (159), Expect = 8e-14
 Identities = 16/115 (13%), Positives = 43/115 (37%), Gaps = 10/115 (8%)

Query: 6   DRERVEQSLKEFR-------NFVDTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIR 56
           D+   +++LK++             +     +             E+F  A     ++ +
Sbjct: 384 DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443

Query: 57  VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRT 111
           +DP +    +  A +    + ++DEAI L E++  + ++     + +   E  + 
Sbjct: 444 LDPRSEQAKIGLAQM-KLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKV 497

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.1 bits (151), Expect = 8e-13
 Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 2/99 (2%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
              E+ L +          +  +          + D  GA E   ++I + P   + Y++
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIY 275

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
            A L++  R +  E     +KA+ +D +    Y   G +
Sbjct: 276 MA-LIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQM 313

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.1 bits (151), Expect = 1e-12
 Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
           +++ +     +  +          A +   +  FD  E  F+ + R  PE   +    A 
Sbjct: 328 DKAKELDPENIFPYIQ-------LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFA- 379

Query: 71  LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
            +L  + + D+A+K  + AI ++      Y  +  +
Sbjct: 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPL 415

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 53.2 bits (128), Expect = 1e-09
 Identities = 8/70 (11%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 37  VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
                + +D A +Y+N ++ +   +   Y + +     + G++ + +++  KA+ +    
Sbjct: 15  QFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSAC-YVSVGDLKKVVEMSTKALELKPDY 72

Query: 97  MFAYETLGTI 106
                   + 
Sbjct: 73  SKVLLRRASA 82

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.4 bits (100), Expect = 7e-06
 Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA 89
          +   V   D     E   +++ + P+ + + + RA    +  G   +A+  +   
Sbjct: 46 SACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA-NEGLGKFADAMFDLSVL 99

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 3/58 (5%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92
           AQ+ + QED D A   F  S  +                     V + I+        
Sbjct: 456 AQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT---FAEAAKVQQRIRSDPVLAKK 510

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 4/100 (4%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNR-SIRVDPENASL-- 64
             +++ ++     ++   +  +     A        F  A    +  S+  D  +AS+  
Sbjct: 53  GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEP 112

Query: 65  YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
            + R  L  QA   + E    I+ A +             
Sbjct: 113 MLERN-LNKQAMSKLKEKFGDIDTATATPTELSTQPAKER 151

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 82.1 bits (203), Expect = 9e-20
 Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 15/118 (12%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
            +  +S   F         + E  T FA++L D+ DFD A + ++ + R++     ++V 
Sbjct: 358 GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417

Query: 68  RAMLMLQAR---------------GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
              L+ +A                   + AIKL+ KA  +D     A   L  +++Q 
Sbjct: 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQM 475

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 67.1 bits (164), Expect = 2e-14
 Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 17/122 (13%)

Query: 6   DRERVEQSLKEFR-------NFVDTHSN---------VVEACTLFAQVLVDQEDFDGAEE 49
           DR   + ++K++             H           ++   +      +D+E F+ A +
Sbjct: 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449

Query: 50  YFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 109
              ++  +DP +    +  A L       +DEAI+L E +  + ++     +     E  
Sbjct: 450 LLTKACELDPRSEQAKIGLAQL-KLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAA 508

Query: 110 RT 111
           + 
Sbjct: 509 KI 510

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 67.1 bits (164), Expect = 2e-14
 Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 8/106 (7%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
           +++       V  +  +       A +L  Q  F  +E +FN +    P    +    A 
Sbjct: 334 QKAQSLNPENVYPYIQL-------ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA- 385

Query: 71  LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW 116
            +L  RG+ D AIK  + A  +++     +  +G +  + T +   
Sbjct: 386 EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQ 431

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 66.3 bits (162), Expect = 3e-14
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           A  L D+E+     ++F +++ ++PE    Y HR   M     +   A +  +KA S++ 
Sbjct: 283 ALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG-QMYFILQDYKNAKEDFQKAQSLNP 341

Query: 95  SCMFAYETLGTI 106
             ++ Y  L  +
Sbjct: 342 ENVYPYIQLACL 353

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 64.7 bits (158), Expect = 9e-14
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 1/101 (0%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
           D+E  ++  K F+  VD +           Q+    +D+  A+E F ++  ++PEN   Y
Sbjct: 288 DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 347

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           +  A L L  +G   E+     +      +          I
Sbjct: 348 IQLACL-LYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEI 387

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 64.0 bits (156), Expect = 2e-13
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 2/99 (2%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
           +     L           N   A          + +   A+     SI + P   + Y+ 
Sbjct: 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIF 281

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
            A L L  + N  E  K  +KA+ ++      Y   G +
Sbjct: 282 LA-LTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQM 319

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 37  VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
                ++F+ A +Y+  +I +DP     Y + +     + G++++ I+   KA+ I    
Sbjct: 34  HFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISAC-YISTGDLEKVIEFTTKALEIKPDH 92

Query: 97  MFAYETLGTI 106
             A     + 
Sbjct: 93  SKALLRRASA 102

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.8 bits (114), Expect = 8e-08
 Identities = 10/89 (11%), Positives = 36/89 (40%), Gaps = 1/89 (1%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
             +   +++K ++  ++   N     +  +   +   D +   E+  +++ + P+++   
Sbjct: 37  TAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKAL 96

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           + RA    ++ GN  +A+  +        
Sbjct: 97  LRRA-SANESLGNFTDAMFDLSVLSLNGD 124

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 3/101 (2%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
           D E+   ++K      +      +A    AQ+ +  E  D A E F  S  +        
Sbjct: 440 DEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                        + + ++      +  +  +  Y   G +
Sbjct: 500 QATT---FAEAAKIQKRLRADPIISAKMELTLARYRAKGML 537

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 7/75 (9%), Positives = 21/75 (28%), Gaps = 1/75 (1%)

Query: 33  LFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM-LMLQARGNVDEAIKLIEKAIS 91
           L    +    ++D A    + +++            A  L+ ++       +        
Sbjct: 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDP 237

Query: 92  IDKSCMFAYETLGTI 106
           + ++   A    G  
Sbjct: 238 LRENAALALCYTGIF 252

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 3/67 (4%)

Query: 43  DFDGAEEYFNRSIRVDPENASLYVHRAMLM---LQARGNVDEAIKLIEKAISIDKSCMFA 99
                E    +   + P     Y  +            N +EAIK  + AI +D +    
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61

Query: 100 YETLGTI 106
           Y  +   
Sbjct: 62  YSNISAC 68

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 67.8 bits (166), Expect = 2e-15
 Identities = 10/101 (9%), Positives = 34/101 (33%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
                +++   ++  +    N V+     A++ V +     A   + + ++++ +N +  
Sbjct: 66  KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAAN 125

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           +              + ++   K +S      +A    G  
Sbjct: 126 IFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLS 166

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 58.6 bits (142), Expect = 7e-12
 Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 15/98 (15%)

Query: 28  VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM---------------LM 72
           V+         ++      A  YF ++I ++ +   +Y    +               L 
Sbjct: 4   VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63

Query: 73  LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
            +   N D+A    ++ +    + +   E    ++V R
Sbjct: 64  YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 56.7 bits (137), Expect = 3e-11
 Identities = 14/102 (13%), Positives = 31/102 (30%), Gaps = 3/102 (2%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ-EDFDGAEEYFNRSIRVDPENASL 64
            R + + +L+ +   +   ++ + A            E      E   + +    +    
Sbjct: 100 CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159

Query: 65  YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                 L        ++A   ++K I    S   A +TL  I
Sbjct: 160 RYRDG-LSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDKI 199

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 68.3 bits (168), Expect = 4e-15
 Identities = 20/101 (19%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
           ++  V ++   +   +       ++    A +  +Q + + A   + +++ V PE A+ +
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
            + A + LQ +G + EA+   ++AI I  +   AY  +G  
Sbjct: 343 SNLASV-LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 63.7 bits (156), Expect = 2e-13
 Identities = 21/101 (20%), Positives = 50/101 (49%), Gaps = 1/101 (0%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
           +R +++++++ +R+ +    + ++     A  LV   D +GA + +  +++ +P+   + 
Sbjct: 79  ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 138

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                L L+A G ++EA     KAI    +   A+  LG +
Sbjct: 139 SDLGNL-LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 63.7 bits (156), Expect = 2e-13
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 1/101 (0%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
           +    ++++  +   +    N        A V  +Q   D A + + R+I + P     Y
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
            + A   L+ +G+V EA      A+ +  +   +   L  I
Sbjct: 275 CNLANA-LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 63.3 bits (155), Expect = 3e-13
 Identities = 18/101 (17%), Positives = 43/101 (42%), Gaps = 1/101 (0%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
              R+++S       +  +  + EA +    V  ++     A E++  ++R+ P+    Y
Sbjct: 45  QCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGY 104

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           ++ A   L A G+++ A++    A+  +         LG +
Sbjct: 105 INLAAA-LVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNL 144

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.9 bits (154), Expect = 4e-13
 Identities = 18/101 (17%), Positives = 42/101 (41%), Gaps = 1/101 (0%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
              R+E++   +   ++T  N   A +    V   Q +   A  +F +++ +DP     Y
Sbjct: 147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY 206

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           ++   + L+     D A+    +A+S+  +    +  L  +
Sbjct: 207 INLGNV-LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.6 bits (140), Expect = 3e-11
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           A       DF+ AE +  +  R +P+N  + +  + +       +D +      AI  + 
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSI-HFQCRRLDRSAHFSTLAIKQNP 64

Query: 95  SCMFAYETLGTI 106
               AY  LG +
Sbjct: 65  LLAEAYSNLGNV 76

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 62.7 bits (153), Expect = 3e-13
 Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 17/111 (15%)

Query: 6   DRERVEQSLKEFR---------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR 56
           +++R E++ +                   N+         V +  +    A+EYF +S+R
Sbjct: 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENL-------GLVSLQMKKPAQAKEYFEKSLR 169

Query: 57  VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE 107
           ++    S+ +  A L L        A +  +           +      + 
Sbjct: 170 LNRNQPSVALEMADL-LYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLA 219

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 56.1 bits (136), Expect = 8e-11
 Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 17/110 (15%)

Query: 6   DRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 58
            R   EQ+    R       +  D H+         A V   + +   A+E + +++  D
Sbjct: 49  QRGNTEQAKVPLRKALEIDPSSADAHAA-------LAVVFQTEMEPKLADEEYRKALASD 101

Query: 59  PENASLYVHRAMLMLQARGNVDEAIKLIEKAI--SIDKSCMFAYETLGTI 106
             NA +  +     L  +   +EA + + +A   ++       +E LG +
Sbjct: 102 SRNARVLNNYGGF-LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLV 150

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 12/86 (13%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
           +   ++ K      D +  +           + + + + A+    +++ +DP +A  +  
Sbjct: 24  QNPLKTDKGRDEARDAYIQL-------GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAA 76

Query: 68  RAMLMLQARGNVDEAIKLIEKAISID 93
            A ++ Q       A +   KA++ D
Sbjct: 77  LA-VVFQTEMEPKLADEEYRKALASD 101

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 48.8 bits (117), Expect = 3e-08
 Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 8/83 (9%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
           E+SL+  RN       +       A +L  + ++  A +Y++   +   +NA       +
Sbjct: 165 EKSLRLNRNQPSVALEM-------ADLLYKEREYVPARQYYDLFAQGGGQNARSL-LLGI 216

Query: 71  LMLQARGNVDEAIKLIEKAISID 93
            + +   + D A     +   + 
Sbjct: 217 RLAKVFEDRDTAASYGLQLKRLY 239

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 48.4 bits (116), Expect = 4e-08
 Identities = 12/114 (10%), Positives = 41/114 (35%), Gaps = 17/114 (14%)

Query: 6   DRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV- 57
                + + +E+R             +N       +   L +Q+ ++ A +    + +  
Sbjct: 83  TEMEPKLADEEYRKALASDSRNARVLNN-------YGGFLYEQKRYEEAYQRLLEASQDT 135

Query: 58  -DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
             PE + ++ +   L+        +A +  EK++ ++++       +  +  + 
Sbjct: 136 LYPERSRVFENLG-LVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE 188

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 38  LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 97
           LV +    G +    ++ +   E    Y+    L    RGN ++A   + KA+ ID S  
Sbjct: 14  LVPRGSHMGDQNPL-KTDKGRDEARDAYIQLG-LGYLQRGNTEQAKVPLRKALEIDPSSA 71

Query: 98  FAYETLGTI 106
            A+  L  +
Sbjct: 72  DAHAALAVV 80

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 62.7 bits (153), Expect = 4e-13
 Identities = 9/101 (8%), Positives = 34/101 (33%), Gaps = 1/101 (0%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
           D      ++      ++      E   L A+  + + +   A      + ++  +N   +
Sbjct: 132 DGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF 191

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
              + L     G+ + ++  + + + +D+     +     +
Sbjct: 192 YKISTL-YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 60.0 bits (146), Expect = 4e-12
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 1/75 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
                  E    A    +  ++++P+N +    RA          DEAI+  E A   ++
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA-YLIEEMYDEAIQDYEAAQEHNE 337

Query: 95  SCMFAYETLGTIEVQ 109
           +     E L   +  
Sbjct: 338 NDQQIREGLEKAQRL 352

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 57.7 bits (140), Expect = 3e-11
 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 8/88 (9%)

Query: 19  NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 78
           +    +          A V +       A     + I +  +  +  + R  L L  +G 
Sbjct: 35  DNYIAYYR-------RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL-LLKQGK 86

Query: 79  VDEAIKLIEKAISIDKSCMFAYETLGTI 106
           +DEA    +K +  + S     E    +
Sbjct: 87  LDEAEDDFKKVLKSNPSEQEEKEAESQL 114

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.7 bits (135), Expect = 1e-10
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 1/79 (1%)

Query: 28  VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 87
           VE      + L+       A   F+ ++  DP+N   Y  RA +   A G    A+  + 
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATV-FLAMGKSKAALPDLT 61

Query: 88  KAISIDKSCMFAYETLGTI 106
           K I++      A    G +
Sbjct: 62  KVIALKMDFTAARLQRGHL 80

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 14/118 (11%), Positives = 33/118 (27%), Gaps = 28/118 (23%)

Query: 8   ERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 60
            + + +L +         +F                +L+ Q   D AE+ F + ++ +P 
Sbjct: 51  GKSKAALPDLTKVIALKMDFTAARLQR-------GHLLLKQGKLDEAEDDFKKVLKSNPS 103

Query: 61  NASLYVHRAMLM--------------LQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
                   + L+                   +   AI  ++K + +        E   
Sbjct: 104 EQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 11/116 (9%), Positives = 35/116 (30%), Gaps = 15/116 (12%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
                 +++ + +      S+  EA    + +     D + +       +++D ++   +
Sbjct: 166 KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 225

Query: 66  VHRAML-----------MLQARGNVDEAIKLIEKAISID----KSCMFAYETLGTI 106
            H   +            L   G   +A    E  +  +    +  + + E +   
Sbjct: 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHC 281

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 61.0 bits (149), Expect = 1e-12
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
             S           S              +  D++ A E F ++I  + E+A  Y++ A 
Sbjct: 9   HHSSGLVPRGSHMASMTGGQ---QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFAN 65

Query: 71  LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           L L +   ++ A+   +KA+ +D S   AY   G +
Sbjct: 66  L-LSSVNELERALAFYDKALELDSSAATAYYGAGNV 100

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 59.1 bits (144), Expect = 5e-12
 Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 15/108 (13%)

Query: 6   DRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 58
             E+ + +L   +       N  +           F   L ++   D A   F      D
Sbjct: 137 KLEQPKLALPYLQRAVELNENDTEARFQ-------FGMCLANEGMLDEALSQFAAVTEQD 189

Query: 59  PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           P +A  + +  +     + N ++A+++++KAI I    M A      +
Sbjct: 190 PGHADAFYNAGVT-YAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 56.8 bits (138), Expect = 4e-11
 Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 15/108 (13%)

Query: 6   DRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 58
            +E  +++   F           D    +         VLV  E    A  Y  R++ ++
Sbjct: 103 VKEMYKEAKDMFEKALRAGMENGDLFYML-------GTVLVKLEQPKLALPYLQRAVELN 155

Query: 59  PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
             +         + L   G +DEA+         D     A+   G  
Sbjct: 156 ENDTEARFQFG-MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVT 202

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 56.0 bits (136), Expect = 8e-11
 Identities = 17/96 (17%), Positives = 40/96 (41%), Gaps = 8/96 (8%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
            ++++E +     + N       FA +L    + + A  ++++++ +D   A+ Y     
Sbjct: 47  TKAIEENKEDAIPYIN-------FANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99

Query: 71  LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           +    +    EA  + EKA+         +  LGT+
Sbjct: 100 V-YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTV 134

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 10/80 (12%), Positives = 28/80 (35%), Gaps = 15/80 (18%)

Query: 6   DRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 58
           +   ++++L +F           D   N              +E+ + A E  +++I + 
Sbjct: 171 NEGMLDEALSQFAAVTEQDPGHADAFYNA-------GVTYAYKENREKALEMLDKAIDIQ 223

Query: 59  PENASLYVHRAMLMLQARGN 78
           P++      + +L      +
Sbjct: 224 PDHMLALHAKKLL-GHHHHH 242

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 61.0 bits (148), Expect = 2e-12
 Identities = 12/86 (13%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 19  NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 78
            +  T +N+              + +D A +  N+ + +   +A+++   A++    +  
Sbjct: 514 PWAATWANL-------GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALV-YLHKKI 565

Query: 79  VDEAIKLIEKAISIDKSCMFAYETLG 104
              AI  + ++++I  + + A + L 
Sbjct: 566 PGLAITHLHESLAISPNEIMASDLLK 591

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 59.9 bits (145), Expect = 6e-12
 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 1/101 (0%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
              ++ ++ + F            A   FA     + + D A   +  + R+       Y
Sbjct: 385 CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPY 444

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           +   M      GN+  A + ++ + ++ +        LG +
Sbjct: 445 LFLGMQ-HMQLGNILLANEYLQSSYALFQYDPLLLNELGVV 484

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 58.3 bits (141), Expect = 2e-11
 Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 1/99 (1%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
               +      + VD H              +       A  YF++S  +DP+    ++ 
Sbjct: 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIG 412

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
            A       G  D+AI     A  + +     Y  LG  
Sbjct: 413 FA-HSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQ 450

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 55.6 bits (134), Expect = 2e-10
 Identities = 10/88 (11%), Positives = 26/88 (29%), Gaps = 1/88 (1%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
              +Q++  +                     +   +   A EY   S  +   +  L   
Sbjct: 421 GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNE 480

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDKS 95
             ++    + ++  AI   + A+ + K 
Sbjct: 481 LGVV-AFNKSDMQTAINHFQNALLLVKK 507

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.8 bits (132), Expect = 4e-10
 Identities = 13/99 (13%), Positives = 25/99 (25%), Gaps = 8/99 (8%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
           E    S+       D            A  L  +  F        + + +DP N  +Y  
Sbjct: 292 EDYLSSINGLEKSSDLLLC-------KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPL 344

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                L   G  ++   +    +         +  +G  
Sbjct: 345 HLAS-LHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIY 382

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 1/67 (1%)

Query: 40  DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA 99
             ED     E +  SI    +++ L + +A   L  R    + + +  K + ID   +  
Sbjct: 283 SHEDELRRAEDYLSSINGLEKSSDLLLCKADT-LFVRSRFIDVLAITTKILEIDPYNLDV 341

Query: 100 YETLGTI 106
           Y      
Sbjct: 342 YPLHLAS 348

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.5 bits (118), Expect = 2e-08
 Identities = 8/106 (7%), Positives = 32/106 (30%), Gaps = 8/106 (7%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-------DPE 60
             +  + +  ++                 V  ++ D   A  +F  ++ +       +  
Sbjct: 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514

Query: 61  NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
            A+ + +      +     D AI  + + + +  +    +  +  +
Sbjct: 515 WAATWANLGHA-YRKLKMYDAAIDALNQGLLLSTNDANVHTAIALV 559

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 29  EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML-MLQARGNVDEAIKL-I 86
             C L  QV  +  +FD A+E +  ++ VD +    +       +L A    D  +KL  
Sbjct: 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNY 260

Query: 87  EKAISIDKSCMFAYETLG 104
                 D + + +   L 
Sbjct: 261 STYSKEDAAFLRSLYMLK 278

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 39.4 bits (92), Expect = 9e-05
 Identities = 7/65 (10%), Positives = 21/65 (32%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
           +  + ++      +   +N     T  A V + ++    A  + + S+ + P        
Sbjct: 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDL 589

Query: 68  RAMLM 72
               +
Sbjct: 590 LKRAL 594

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 61.0 bits (147), Expect = 2e-12
 Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
           ++  +E++++ +R  ++       A +  A VL  Q     A  ++  +IR+ P  A  Y
Sbjct: 21  EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 80

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
            +     L+   +V  A++   +AI I+ +   A+  L +I
Sbjct: 81  SNMGN-TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 120

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 55.2 bits (132), Expect = 3e-10
 Identities = 20/99 (20%), Positives = 46/99 (46%), Gaps = 1/99 (1%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
            + +++++L  ++  +       +A +     L + +D  GA + + R+I+++P  A  +
Sbjct: 55  QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAH 114

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
            + A  + +  GN+ EAI     A+ +      AY  L 
Sbjct: 115 SNLAS-IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 54.8 bits (131), Expect = 4e-10
 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 28  VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 87
            ++    A +  +Q + + A   + +++ V PE A+ + + A  +LQ +G + EA+   +
Sbjct: 9   ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA-SVLQQQGKLQEALMHYK 67

Query: 88  KAISIDKSCMFAYETLGTI 106
           +AI I  +   AY  +G  
Sbjct: 68  EAIRISPTFADAYSNMGNT 86

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 60.7 bits (147), Expect = 3e-12
 Identities = 15/106 (14%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 5   GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPE 60
            +    + ++   R  +  + +      L A  L       E+    E+    ++   P 
Sbjct: 186 DNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG 245

Query: 61  NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
              +    A    + +   D+AI+L++KA+    +  + +  +G  
Sbjct: 246 VTDVLRSAAKF-YRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 58.0 bits (140), Expect = 3e-11
 Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 6/106 (5%)

Query: 7   RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDF---DGAEEYFNRSIRVDPENAS 63
             + E++   F   ++      E  +  A      +++     A +   ++IR++P+N  
Sbjct: 151 GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210

Query: 64  LYVHRAML---MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           L V  A+    M +      E  KL+E+A+           +    
Sbjct: 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKF 256

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 56.5 bits (136), Expect = 8e-11
 Identities = 14/103 (13%), Positives = 39/103 (37%), Gaps = 3/103 (2%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA---SL 64
           E +  ++   +   + + N+   C++ A +    + ++ AE YF +    +        L
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373

Query: 65  YVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE 107
           ++      L      D+AI    + + I++      +    ++
Sbjct: 374 HLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 53.8 bits (129), Expect = 7e-10
 Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 2/101 (1%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
           ++V+   ++F +     S  ++    + ++       + A+  F +++   P+N      
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177

Query: 68  RAMLM--LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
            A+    L        AI  + +AI ++    +    L   
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALK 218

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 15/119 (12%), Positives = 37/119 (31%), Gaps = 18/119 (15%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
           + E   +  K     ++    V +     A+    +++ D A E   +++   P NA L+
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284

Query: 66  VHRAML------------------MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                                     +    +  A+  ++KA   + +       L ++
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASL 343

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 6/57 (10%), Positives = 18/57 (31%), Gaps = 1/57 (1%)

Query: 48  EEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
           ++     +  +  ++      A L  +    + +A +  E+ +        A    G
Sbjct: 416 QKIAKMRLSKNGADSEALHVLAFL-QELNEKMQQADEDSERGLESGSLIPSASSWNG 471

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 60.0 bits (146), Expect = 3e-12
 Identities = 9/88 (10%), Positives = 24/88 (27%), Gaps = 8/88 (9%)

Query: 19  NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 78
             +D +  +            ++ +F  A +Y  + IR    +  ++             
Sbjct: 106 TRLDMYGQI-------GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQA-YYYNKE 157

Query: 79  VDEAIKLIEKAISIDKSCMFAYETLGTI 106
             +A     K + +  +    Y      
Sbjct: 158 YVKADSSFVKVLELKPNIYIGYLWRARA 185

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 58.1 bits (141), Expect = 1e-11
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 8/101 (7%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
           D E     +   +               + ++L+ +     A + +  ++  D     +Y
Sbjct: 59  DIETYFSKVNATKAKSADFEY-------YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY 111

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                     +GN   AI+ +EK I    +    +  LG  
Sbjct: 112 GQIGSY-FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQA 151

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 56.9 bits (138), Expect = 4e-11
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE---KAIS 91
           A  L    ++  A E FN+       +  +Y  RA+         D A K IE     ++
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVC-YYELAKYDLAQKDIETYFSKVN 68

Query: 92  IDKSCMFAYETLGTI 106
             K+    +E  G I
Sbjct: 69  ATKAKSADFEYYGKI 83

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 56.1 bits (136), Expect = 7e-11
 Identities = 13/104 (12%), Positives = 36/104 (34%), Gaps = 4/104 (3%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEY---FNRSIRVDPENA 62
                 ++++ F        N        A    +   +D A++    +   +      +
Sbjct: 15  KNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKS 74

Query: 63  SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           + + +   + L  +G    AI+  + A+  D + +  Y  +G+ 
Sbjct: 75  ADFEYYGKI-LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY 117

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 46.9 bits (112), Expect = 1e-07
 Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 11/95 (11%)

Query: 19  NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM-------L 71
           N    +     A    A           A+ Y+ + I V     + Y    +        
Sbjct: 174 NIYIGYLWR--ARANAA--QDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAY 229

Query: 72  MLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                 +  +A    +  +++D +   A + L   
Sbjct: 230 YYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 60.0 bits (146), Expect = 4e-12
 Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 3/98 (3%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLF--AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
             +L++ +   +  +       L     V    + +  A +Y  +++ + P+NAS Y   
Sbjct: 217 LDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAI 276

Query: 69  AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
             +     GN + A+     A+ + +   F+   LG  
Sbjct: 277 GYI-HSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 57.7 bits (140), Expect = 3e-11
 Identities = 11/100 (11%), Positives = 29/100 (29%), Gaps = 1/100 (1%)

Query: 7   RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV 66
             + E + +              A   +      + + D A   +  + ++        +
Sbjct: 104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPML 163

Query: 67  HRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           +  +       N   A +   +A+SI     F    +G +
Sbjct: 164 YIGLE-YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV 202

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 51.9 bits (125), Expect = 3e-09
 Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 8/97 (8%)

Query: 10  VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA 69
           + +S+   +  +D   ++       A+      DF    +  +  +  DP +AS      
Sbjct: 11  IPESVDGLQENLDVVVSL-------AERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHI 63

Query: 70  MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
              L      +E   L  K + +  S   ++  +G  
Sbjct: 64  GT-LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 48.4 bits (116), Expect = 6e-08
 Identities = 12/96 (12%), Positives = 31/96 (32%)

Query: 9   RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
             +   K     ++          +    LV+    +      ++ + + P N   +   
Sbjct: 37  DFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96

Query: 69  AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
               L      + A + + KA +++K+   A+   G
Sbjct: 97  GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYG 132

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 8/77 (10%), Positives = 26/77 (33%), Gaps = 1/77 (1%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
           ++  ++L   R  +          +    +     +F+ A +YF+ ++ +  ++      
Sbjct: 250 KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTM 309

Query: 68  RAMLMLQARGNVDEAIK 84
                ++      EA  
Sbjct: 310 LGHC-IEMYIGDSEAYI 325

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 12/108 (11%), Positives = 30/108 (27%), Gaps = 10/108 (9%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE------- 60
              + + + F   +               V     ++  AE++F  ++            
Sbjct: 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232

Query: 61  --NASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                L  +    + +      EA+    +A+ +       Y  +G I
Sbjct: 233 DKWEPLLNNLG-HVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYI 279

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.1 bits (146), Expect = 4e-12
 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 1/76 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
                  E    A    +  ++++P+N +    RA          DEAI+  E A   ++
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA-YLIEEMYDEAIQDYETAQEHNE 360

Query: 95  SCMFAYETLGTIEVQR 110
           +     E L   +   
Sbjct: 361 NDQQIREGLEKAQRLL 376

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 59.7 bits (145), Expect = 6e-12
 Identities = 8/101 (7%), Positives = 33/101 (32%), Gaps = 1/101 (0%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
                  ++      ++      E   L A+  + + +   A      + ++  +N   +
Sbjct: 155 GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF 214

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
              + L     G+ + ++  + + + +D+     +     +
Sbjct: 215 YKISTL-YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 56.6 bits (137), Expect = 7e-11
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           A       D+  A  + ++ + V   +A L   RA       G   +AI  ++ A  +  
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA-ECFIKEGEPRKAISDLKAASKLKN 208

Query: 95  SCMFAYETLGTI 106
               A+  + T+
Sbjct: 209 DNTEAFYKISTL 220

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 53.9 bits (130), Expect = 6e-10
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
            + L+       A   F+ ++  DP+N   Y  RA +   A G    A+  + K I +  
Sbjct: 33  GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATV-FLAMGKSKAALPDLTKVIQLKM 91

Query: 95  SCMFAYETLGTI 106
               A    G +
Sbjct: 92  DFTAARLQRGHL 103

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           A V +       A     + I++  +  +  + R  L L  +G +DEA    +K +  + 
Sbjct: 67  ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL-LLKQGKLDEAEDDFKKVLKSNP 125

Query: 95  SCMFAYETLGTI 106
           S     E    +
Sbjct: 126 SENEEKEAQSQL 137

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 51.6 bits (124), Expect = 5e-09
 Identities = 15/118 (12%), Positives = 35/118 (29%), Gaps = 28/118 (23%)

Query: 8   ERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 60
            + + +L +         +F                +L+ Q   D AE+ F + ++ +P 
Sbjct: 74  GKSKAALPDLTKVIQLKMDFTAARLQR-------GHLLLKQGKLDEAEDDFKKVLKSNPS 126

Query: 61  NASLYVHRAMLM--------------LQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
                  ++ L+                  G+   AI  ++K + +        E   
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA 184

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 51.2 bits (123), Expect = 5e-09
 Identities = 9/99 (9%), Positives = 30/99 (30%), Gaps = 11/99 (11%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
                 +++ + +      ++  EA    + +     D + +       +++D ++   +
Sbjct: 189 KEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 248

Query: 66  VHRAML-----------MLQARGNVDEAIKLIEKAISID 93
            H   +            L   G   +A    E  +  +
Sbjct: 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 287

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.5 bits (145), Expect = 4e-12
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 1/99 (1%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
              E+ LK+       +    E   L  +    + D+  A + +   I+  PE+A  Y +
Sbjct: 119 RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSN 178

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           RA   L    +  EAI    KAI  D + + AY    T 
Sbjct: 179 RAAA-LAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 216

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 56.0 bits (136), Expect = 7e-11
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           A  L     F  A    N++I  DP     Y+ +A     A      A++ ++ A + D 
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA-QIAVKEYASALETLDAARTKDA 238

Query: 95  SCMFAYETLG 104
                     
Sbjct: 239 EVNNGSSARE 248

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 56.0 bits (136), Expect = 8e-11
 Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           A    ++ +++ A    N ++    E  + Y   +       GN    +  ++K I   +
Sbjct: 45  AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS-FARIGNAYHKLGDLKKTIEYYQ 103

Query: 95  SCMFAY 100
             +  +
Sbjct: 104 KSLTEH 109

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 52.6 bits (127), Expect = 1e-09
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 37  VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
                  FD A E++N++  +   + +   +RA      +G  + AI  +  A+   +  
Sbjct: 14  KFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAA-EYEKGEYETAISTLNDAVEQGREM 71

Query: 97  MFAYETLG 104
              Y+ + 
Sbjct: 72  RADYKVIS 79

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 48.3 bits (116), Expect = 5e-08
 Identities = 8/94 (8%), Positives = 29/94 (30%), Gaps = 9/94 (9%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
             ++++ R     +  +       ++      +         ++I    ++ + +   A 
Sbjct: 62  NDAVEQGREMRADYKVI-------SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTAD 113

Query: 71  LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
           + L    N ++ +K  E    ++          G
Sbjct: 114 I-LTKLRNAEKELKKAEAEAYVNPEKAEEARLEG 146

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 59.9 bits (145), Expect = 5e-12
 Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 1/98 (1%)

Query: 9   RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
              + L + R  V        A  + A   +   D    E    R + + P +       
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 69  AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
             +    +    EA  L+++A             LG  
Sbjct: 64  GRVR-WTQQRHAEAAVLLQQASDAAPEHPGIALWLGHA 100

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 57.5 bits (139), Expect = 3e-11
 Identities = 13/99 (13%), Positives = 27/99 (27%), Gaps = 1/99 (1%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
                       +  +  H    EA     +V   Q+    A     ++    PE+  + 
Sbjct: 35  GMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIA 94

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
           +      L+  G  + A     +A  +     +    L 
Sbjct: 95  LWLGHA-LEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 51.4 bits (123), Expect = 5e-09
 Identities = 8/68 (11%), Positives = 23/68 (33%), Gaps = 1/68 (1%)

Query: 43  DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET 102
           D          ++R  P++   ++  A       G+       +++ +++      A   
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADA-ELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 103 LGTIEVQR 110
           LG +   +
Sbjct: 63  LGRVRWTQ 70

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 56.1 bits (136), Expect = 8e-12
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
          AQ  +  ++   A   F   +  DP+    Y H   L  +     D+AI    + I + +
Sbjct: 14 AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKL-YERLDRTDDAIDTYAQGIEVAR 72

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 41.9 bits (99), Expect = 2e-06
 Identities = 10/65 (15%), Positives = 23/65 (35%)

Query: 6  DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
            +   ++L  F   V+T  + V       ++    +  D A + + + I V  E  +  
Sbjct: 19 KHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK 78

Query: 66 VHRAM 70
              +
Sbjct: 79 DLSEL 83

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 38.8 bits (91), Expect = 4e-05
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 58  DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           DPE+       A        N   A+ L E+ +  D   +  Y  LG +
Sbjct: 3   DPEDPFTRYALAQE-HLKHDNASRALALFEELVETDPDYVGTYYHLGKL 50

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.0 bits (143), Expect = 1e-11
 Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 1/99 (1%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
           E V++ L             V A           E          ++  + PE       
Sbjct: 358 ETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 417

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                 QA   V   + ++ +A  +    + A  + G  
Sbjct: 418 HDGG-KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 455

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 13/101 (12%), Positives = 26/101 (25%), Gaps = 1/101 (0%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
             E V++ L             V A           E          ++  + P+     
Sbjct: 288 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAI 347

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                   QA   V   + ++ +A  +    + A  + G  
Sbjct: 348 ASHDGG-KQALETVQRLLPVLCQAHGLTPEQVVAIASNGGG 387

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.1 bits (138), Expect = 6e-11
 Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 1/99 (1%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
           E V++ L             V A           E          ++  + P+       
Sbjct: 188 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 247

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                 QA   V   + ++ +A  +    + A  +    
Sbjct: 248 NGGG-KQALETVQRLLPVLCQAHGLTPQQVVAIASNSGG 285

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 56.7 bits (137), Expect = 7e-11
 Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 1/99 (1%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
           E V++ L             V A           E          ++  + PE       
Sbjct: 86  ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 145

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                 QA   V   + ++ +A  +    + A  + G  
Sbjct: 146 HDGG-KQALETVQALLPVLCQAHGLTPEQVVAIASNGGG 183

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 1/99 (1%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
           E V++ L             V A           E          ++  + PE       
Sbjct: 120 ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIAS 179

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                 QA   V   + ++ +A  +    + A  + G  
Sbjct: 180 NGGG-KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 217

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.9 bits (135), Expect = 1e-10
 Identities = 12/99 (12%), Positives = 26/99 (26%), Gaps = 1/99 (1%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
           E V++ L             V A    +      E          ++  + P+       
Sbjct: 256 ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 315

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                 QA   V   + ++ +A  +    + A  +    
Sbjct: 316 NGGG-KQALETVQRLLPVLCQAHGLTPQQVVAIASHDGG 353

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.5 bits (121), Expect = 1e-08
 Identities = 9/88 (10%), Positives = 21/88 (23%), Gaps = 1/88 (1%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
             E V++ L             V A           E          ++  + P+     
Sbjct: 390 ALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAI 449

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISID 93
                    A  ++   +   + A++  
Sbjct: 450 ASNGGG-RPALESIVAQLSRPDPALAAL 476

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 1/60 (1%)

Query: 47  AEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                   + + PE             QA   V   + ++ +A  +    + A  +    
Sbjct: 57  RNALTGAPLNLTPEQVVAIASHD-GGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGG 115

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 58.5 bits (142), Expect = 1e-11
 Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 15/111 (13%)

Query: 6   DRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 58
                  +  +F        +  +  +            L    +FD A E F+  + +D
Sbjct: 55  SLGLRALARNDFSQALAIRPDMPEVFNY-------LGIYLTQAGNFDAAYEAFDSVLELD 107

Query: 59  PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ 109
           P     +++R  + L   G    A   +      D +  F    L   E +
Sbjct: 108 PTYNYAHLNRG-IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK 157

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 53.1 bits (128), Expect = 9e-10
 Identities = 6/56 (10%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 38  LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
           + +Q   +  +     +  +    +    +       + G++D A  L + A++ +
Sbjct: 191 ISEQTLMERLKADATDNTSLAEHLSETNFYLG-KYYLSLGDLDSATALFKLAVANN 245

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 51.2 bits (123), Expect = 4e-09
 Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 37  VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
           +         A   F++++ + P+   ++ +   + L   GN D A +  +  + +D + 
Sbjct: 52  LYDSLGLRALARNDFSQALAIRPDMPEVFNYLG-IYLTQAGNFDAAYEAFDSVLELDPTY 110

Query: 97  MFAYETLGTI 106
            +A+   G  
Sbjct: 111 NYAHLNRGIA 120

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 8/66 (12%)

Query: 19  NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 78
           +  +T+           +  +   D D A   F  ++  +  N   + +   L L   G 
Sbjct: 213 HLSETNFY-------LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYAL-LELSLLGQ 264

Query: 79  VDEAIK 84
             + + 
Sbjct: 265 DQDDLA 270

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 41.9 bits (99), Expect = 8e-06
 Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 5/78 (6%)

Query: 33  LFAQVLVDQEDFDGAEEYFNRSIR----VDPENASLYVHRAMLMLQARGNVDEAIKLIEK 88
           + A  L      +       + +      D E A L   R +L   + G    A     +
Sbjct: 10  VLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVL-YDSLGLRALARNDFSQ 68

Query: 89  AISIDKSCMFAYETLGTI 106
           A++I       +  LG  
Sbjct: 69  ALAIRPDMPEVFNYLGIY 86

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 9/103 (8%), Positives = 23/103 (22%), Gaps = 3/103 (2%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
              R + +  +   F     N                D   A+E   +      +    +
Sbjct: 123 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL-DEKQAKEVLKQHFEKSDKEQWGW 181

Query: 66  VHRAMLM--LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                 +  +  +  ++          S+ +        LG  
Sbjct: 182 NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKY 224

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 56.7 bits (137), Expect = 1e-11
 Identities = 10/90 (11%), Positives = 25/90 (27%), Gaps = 1/90 (1%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
              + + + K F+                         ++ A + ++    +D       
Sbjct: 30  QAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
            H A       G++D A      A ++  +
Sbjct: 90  FHAAEC-HLQLGDLDGAESGFYSARALAAA 118

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 54.7 bits (132), Expect = 6e-11
 Identities = 10/90 (11%), Positives = 26/90 (28%), Gaps = 1/90 (1%)

Query: 17  FRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR 76
                    + +E              +D A++ F     +D  +A  ++       Q+ 
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGA-CRQSL 65

Query: 77  GNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           G  ++A++       +D +           
Sbjct: 66  GLYEQALQSYSYGALMDINEPRFPFHAAEC 95

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 56.0 bits (135), Expect = 3e-11
 Identities = 21/109 (19%), Positives = 51/109 (46%), Gaps = 2/109 (1%)

Query: 4   PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS 63
              ++  E  L+  ++ +  +    E   L  +  + Q D+  +   + +++++  ENA 
Sbjct: 20  FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79

Query: 64  LYVHRA-MLMLQARGNV-DEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
           LY   A +L  QA  ++  +   +I+KA+++D + + A   L +    +
Sbjct: 80  LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQ 128

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 56.1 bits (136), Expect = 6e-11
 Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 17/93 (18%)

Query: 9   RVEQSLKEFR---------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP 59
           R  +S+  F               + N              Q  F  AE Y  RS+   P
Sbjct: 92  RPAESMAYFDKALADPTYPTPYIANLNK-------GICSAKQGQFGLAEAYLKRSLAAQP 144

Query: 60  ENASLYVHRAMLMLQARGNVDEAIKLIEKAISI 92
           +    +   A       G + +A    +K  S 
Sbjct: 145 QFPPAFKELART-KMLAGQLGDADYYFKKYQSR 176

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 53.4 bits (129), Expect = 5e-10
 Identities = 14/103 (13%), Positives = 39/103 (37%), Gaps = 2/103 (1%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
             +   Q+     + + +      A  + A++    +  D A+E F +++ + P++A + 
Sbjct: 20  RGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEIN 79

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAIS--IDKSCMFAYETLGTI 106
            +    +        E++   +KA++     +   A    G  
Sbjct: 80  NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC 122

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 47.6 bits (114), Expect = 8e-08
 Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 8/78 (10%)

Query: 16 EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA 75
          +     +  + +       A   +  +D+  A      +++ DP+N   ++ RA  + Q 
Sbjct: 3  KANQVSNIKTQL-------AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRA-EIYQY 54

Query: 76 RGNVDEAIKLIEKAISID 93
              D+A +   +A+SI 
Sbjct: 55 LKVNDKAQESFRQALSIK 72

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 42.6 bits (101), Expect = 4e-06
 Identities = 11/115 (9%), Positives = 42/115 (36%), Gaps = 18/115 (15%)

Query: 6   DRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQ-EDFDGAEEYFNRSIRV 57
             +  +++ + FR       +  + ++N       +   L  +      +  YF++++  
Sbjct: 54  YLKVNDKAQESFRQALSIKPDSAEINNN-------YGWFLCGRLNRPAESMAYFDKALAD 106

Query: 58  D--PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
              P      +++  +    +G    A   ++++++       A++ L   ++  
Sbjct: 107 PTYPTPYIANLNKG-ICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 36.1 bits (84), Expect = 8e-04
 Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 10/84 (11%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
           ++SL     F      +       A+  +       A+ YF +         +  +   +
Sbjct: 137 KRSLAAQPQFPPAFKEL-------ARTKMLAGQLGDADYYFKKYQSRVEVLQADDL---L 186

Query: 71  LMLQARGNVDEAIKLIEKAISIDK 94
           L  +    +  A    E    +  
Sbjct: 187 LGWKIAKALGNAQAAYEYEAQLQA 210

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 55.2 bits (134), Expect = 7e-11
 Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 18/108 (16%)

Query: 6   DRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 58
             ++ + ++              +               L +   FD A + F  ++ + 
Sbjct: 88  QVQKYDLAVPLLIKVAEANPINFNVRFR-------LGVALDNLGRFDEAIDSFKIALGLR 140

Query: 59  PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           P    ++   A    +  G  +EA+   +KA  +D+    A   L  +
Sbjct: 141 PNEGKVHRAIAFS-YEQMGRHEEALPHFKKANELDEG---ASVELALV 184

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 53.6 bits (130), Expect = 3e-10
 Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 15/108 (13%)

Query: 6   DRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 58
               V++  +          + V   + +           V  + +D A     +    +
Sbjct: 54  KTGAVDRGTELLERSLADAPDNVKVATVL-------GLTYVQVQKYDLAVPLLIKVAEAN 106

Query: 59  PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           P N ++      + L   G  DEAI   + A+ +  +    +  +   
Sbjct: 107 PINFNVRFRLG-VALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFS 153

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 52.8 bits (128), Expect = 6e-10
 Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 37  VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
                  +  A     +    D  +  + +H   +     G VD   +L+E++++     
Sbjct: 17  SHAKAGRYSQAVMLLEQVYDADAFDVDVALHLG-IAYVKTGAVDRGTELLERSLADAPDN 75

Query: 97  MFAYETLGTI 106
           +     LG  
Sbjct: 76  VKVATVLGLT 85

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 54.8 bits (132), Expect = 7e-11
 Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 1/87 (1%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
            R+E++   FR         V+     A +   +E F  A + +  +  +   + +   H
Sbjct: 50  GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDK 94
                        +A +  E  I    
Sbjct: 110 TGQC-QLRLKAPLKAKECFELVIQHSN 135

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 54.0 bits (130), Expect = 1e-10
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 4/93 (4%)

Query: 12  QSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML 71
            +LK+     D     ++    +A    ++   + AE +F      D  N    +  A  
Sbjct: 23  ATLKDINAIPDDM---MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAA- 78

Query: 72  MLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
           + Q +    +A  L   A ++ K+        G
Sbjct: 79  IYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG 111

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 55.5 bits (134), Expect = 8e-11
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
           D++  + +L  F    D HS     C     +    ++   AE+ F RSI  D   A  Y
Sbjct: 18  DKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAY 74

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF-AYETLG 104
             R ML        D AIK +++A+   +      Y+ LG
Sbjct: 75  FQRGML-YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILG 113

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 50.9 bits (122), Expect = 5e-09
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 37  VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
           +  D++D+ GA + F+    V   ++ +  +    M     N+ EA K   ++I+ DK  
Sbjct: 15  LAADKKDWKGALDAFSA---VQDPHSRICFNIG-CMYTILKNMTEAEKAFTRSINRDKHL 70

Query: 97  MFAYETLGTI 106
             AY   G +
Sbjct: 71  AVAYFQRGML 80

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 53.5 bits (129), Expect = 1e-10
 Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 8  ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
          ER+E  L +  + +     +        +   + E FD A  +   ++  DP  +  +  
Sbjct: 6  ERLEAMLAQGTDNMLLRFTL-------GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKW 58

Query: 68 RAMLMLQARGNVDEAIKLIEKAISID 93
               LQ +G+   A +  E  ++  
Sbjct: 59 LG-KTLQGQGDRAGARQAWESGLAAA 83

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 46.2 bits (110), Expect = 7e-08
 Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 1/60 (1%)

Query: 45  DGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
               E     +    +N  L               D A+  +  A+  D +   A++ LG
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKT-YAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 43.9 bits (104), Expect = 5e-07
 Identities = 13/79 (16%), Positives = 29/79 (36%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
           + E+ + +L   R  +D       A     + L  Q D  GA + +   +          
Sbjct: 31  EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQ 90

Query: 66  VHRAMLMLQARGNVDEAIK 84
           V + + +   R   ++A++
Sbjct: 91  VVKELQVFLRRLAREDALE 109

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 55.2 bits (134), Expect = 1e-10
 Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 8/78 (10%)

Query: 16  EFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA 75
              +  +  S         A++ +     D A   + +++   P++  L V  A   L  
Sbjct: 146 ALEDTPEIRSA-------LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASA-LLL 197

Query: 76  RGNVDEAIKLIEKAISID 93
           +G  +EA +         
Sbjct: 198 KGKAEEAARAAALEHHHH 215

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 53.7 bits (130), Expect = 4e-10
 Identities = 15/96 (15%), Positives = 37/96 (38%), Gaps = 12/96 (12%)

Query: 9   RVEQSLKEFR-------NFVDTHSNV----VEACTLFAQVLVDQEDFDGAEEYFNRSIRV 57
            V  +L+  +        ++  +  +    V            +   + A      + RV
Sbjct: 54  LVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV 113

Query: 58  DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
           +P  A L++ R  L+    G  D+A   +++A++++
Sbjct: 114 NPRYAPLHLQRG-LVYALLGERDKAEASLKQALALE 148

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 53.3 bits (129), Expect = 5e-10
 Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 16/108 (14%)

Query: 6   DRERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD 58
            +  +EQ+L   +        +   H            V     + D AE    +++ ++
Sbjct: 96  GKGYLEQALSVLKDAERVNPRYAPLHLQ-------RGLVYALLGERDKAEASLKQALALE 148

Query: 59  PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                +    A L   + G +DEA+    KA+      +       + 
Sbjct: 149 D-TPEIRSALAEL-YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASA 194

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 51.0 bits (123), Expect = 4e-09
 Identities = 12/115 (10%), Positives = 34/115 (29%), Gaps = 24/115 (20%)

Query: 9   RVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 61
           R + +L  F           +            A+  +     + A E     +   P  
Sbjct: 20  RYDAALTLFERALKENPQDPEALYW-------LARTQLKLGLVNPALENGKTLVARTPRY 72

Query: 62  ASLYVHRA----------MLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
              Y+  +              + +G +++A+ +++ A  ++      +   G +
Sbjct: 73  LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLV 127

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 48.7 bits (117), Expect = 2e-08
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
           L     +D A   F R+++ +P++       A       G V+ A++  +  ++  
Sbjct: 14 QLYALGRYDAALTLFERALKENPQDPEALYWLA-RTQLKLGLVNPALENGKTLVART 69

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 54.1 bits (130), Expect = 1e-10
 Identities = 13/96 (13%), Positives = 25/96 (26%), Gaps = 1/96 (1%)

Query: 9   RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
            +           +  S+ +E     A        ++ A   F     +D  ++  ++  
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 69  AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
                QA G  D AI        +D           
Sbjct: 62  G-ACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 48.0 bits (114), Expect = 2e-08
 Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 1/85 (1%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
           E +   F+                         +D A   ++    +D        H A 
Sbjct: 38  EDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97

Query: 71  LMLQARGNVDEAIKLIEKAISIDKS 95
             L   G + EA   +  A  +  +
Sbjct: 98  C-LLQXGELAEAESGLFLAQELIAN 121

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 37.2 bits (86), Expect = 2e-04
 Identities = 7/64 (10%), Positives = 16/64 (25%), Gaps = 1/64 (1%)

Query: 43  DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET 102
                         +  +        A    Q+ G  ++A  + +    +D      +  
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQS-GXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 103 LGTI 106
           LG  
Sbjct: 61  LGAC 64

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 53.0 bits (128), Expect = 2e-10
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 38  LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKS 95
            +  E+F+ A  ++ ++I ++P NA  + +RA     L   GN   A++  E+AI ID +
Sbjct: 22  QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKL---GNYAGAVQDCERAICIDPA 78

Query: 96  CMFAYETLGT 105
              AY  +G 
Sbjct: 79  YSKAYGRMGL 88

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 48.7 bits (117), Expect = 9e-09
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           A       ++ GA +   R+I +DP  +  Y    +  L +     EA+   +KA+ +D 
Sbjct: 53  AAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA-LSSLNKHVEAVAYYKKALELDP 111

Query: 95  SCMFAYETLGTIE 107
                   L   E
Sbjct: 112 DNETYKSNLKIAE 124

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 51.6 bits (125), Expect = 3e-10
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)

Query: 19  NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 78
           N  +   N+             Q D+D A EY+ +++ +DP NA  + +        +G+
Sbjct: 7   NSAEAWYNL-------GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG-NAYYKQGD 58

Query: 79  VDEAIKLIEKAISIDKSCMFAYETLGTI 106
            DEAI+  +KA+ +D +   A + LG  
Sbjct: 59  YDEAIEYYQKALELDPNNAEAKQNLGNA 86

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 54.7 bits (132), Expect = 4e-10
 Identities = 10/98 (10%), Positives = 28/98 (28%), Gaps = 1/98 (1%)

Query: 9   RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
            +  ++      +       EA         + E+   A     R + + P N    +  
Sbjct: 80  DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMAL 139

Query: 69  AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           A +      +  +A + ++  I  +    +  +     
Sbjct: 140 A-VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGS 176

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 50.1 bits (120), Expect = 1e-08
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 37  VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
           +     +F+ A + FN ++ V PE+ SL+       L      +EA++   +A+ I    
Sbjct: 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGAT-LANGDRSEEAVEAYTRALEIQPGF 280

Query: 97  MFAYETLGTI 106
           + +   LG  
Sbjct: 281 IRSRYNLGIS 290

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 37  VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
            L + +  + A E + R++ + P       +   +     G   EA+     A+S+ +  
Sbjct: 256 TLANGDRSEEAVEAYTRALEIQPGFIRSRYNLG-ISCINLGAYREAVSNFLTALSLQRKS 314

Query: 97  MFAYETLG 104
               +   
Sbjct: 315 RNQQQVPH 322

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 9/79 (11%), Positives = 26/79 (32%), Gaps = 4/79 (5%)

Query: 19  NFVDTHSN---VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM-LMLQ 74
            +     N           ++  VD    +G +E +  +   + +     +   + ++  
Sbjct: 165 KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224

Query: 75  ARGNVDEAIKLIEKAISID 93
             G  + AI     A+++ 
Sbjct: 225 LSGEFNRAIDAFNAALTVR 243

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 1/73 (1%)

Query: 34  FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
             Q   +Q     +E+ +        ++        +      G++   I  +E AI  D
Sbjct: 37  ENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLK-RLKEGDLPVTILFMEAAILQD 95

Query: 94  KSCMFAYETLGTI 106
                A++ LG  
Sbjct: 96  PGDAEAWQFLGIT 108

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 12/117 (10%), Positives = 31/117 (26%), Gaps = 25/117 (21%)

Query: 8   ERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 60
           E  + ++   +       N +     +       A    +      A E     I+ +P+
Sbjct: 113 ENEQAAIVALQRCLELQPNNLKALMAL-------AVSYTNTSHQQDACEALKNWIKQNPK 165

Query: 61  NASLYVHRAMLM---------LQARGNVDEAIKLIEKAISIDKSCMFA--YETLGTI 106
              L  ++                   ++   +L  +A   +   +       LG +
Sbjct: 166 YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 51.7 bits (124), Expect = 5e-10
 Identities = 11/85 (12%), Positives = 27/85 (31%), Gaps = 1/85 (1%)

Query: 9   RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
            + ++   F           EA         + E    A    N +  +DP++ +++   
Sbjct: 32  NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 91

Query: 69  AMLMLQARGNVDEAIKLIEKAISID 93
           A+       N + A+  +   +   
Sbjct: 92  AVS-HTNEHNANAALASLRAWLLSQ 115

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 45.1 bits (107), Expect = 2e-07
 Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 1/72 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
              ++   +   A   F    + +PE    +     L          AI  +  A  +D 
Sbjct: 24  GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLG-LTQAENEKDGLAIIALNHARMLDP 82

Query: 95  SCMFAYETLGTI 106
             +  +  L   
Sbjct: 83  KDIAVHAALAVS 94

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 51.6 bits (125), Expect = 6e-10
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 8/88 (9%)

Query: 19  NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 78
           N  +   N+             Q D+D A EY+ +++ +DP NA  + +        +G+
Sbjct: 41  NNAEAWYNL-------GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG-NAYYKQGD 92

Query: 79  VDEAIKLIEKAISIDKSCMFAYETLGTI 106
            DEAI+  +KA+ +D +   A + LG  
Sbjct: 93  YDEAIEYYQKALELDPNNAEAKQNLGNA 120

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 53.8 bits (130), Expect = 7e-10
 Identities = 11/85 (12%), Positives = 27/85 (31%), Gaps = 1/85 (1%)

Query: 9   RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
            + ++   F           EA         + E    A    N +  +DP++ +++   
Sbjct: 36  NLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 95

Query: 69  AMLMLQARGNVDEAIKLIEKAISID 93
           A+       N + A+  +   +   
Sbjct: 96  AVS-HTNEHNANAALASLRAWLLSQ 119

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 51.1 bits (123), Expect = 5e-09
 Identities = 11/96 (11%), Positives = 26/96 (27%), Gaps = 1/96 (1%)

Query: 9   RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
            + Q+  ++    +      E        ++   +   A   F    +  PE    +   
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61

Query: 69  AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
            +           AI  +  A  +D   +  +  L 
Sbjct: 62  GLT-QAENEKDGLAIIALNHARMLDPKDIAVHAALA 96

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.4 bits (116), Expect = 4e-08
 Identities = 10/83 (12%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 19  NFVDTHSNVVEACTLFAQ--------VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
            +    S  ++A                    ++       + ++ ++P +A L+    +
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180

Query: 71  LMLQARGNVDEAIKLIEKAISID 93
           L      N D A   + +A+ + 
Sbjct: 181 L-YNLSNNYDSAAANLRRAVELR 202

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.4 bits (116), Expect = 4e-08
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 8/75 (10%)

Query: 19  NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 78
           N    H++          +     ++D A     R++ + P++A L+       L     
Sbjct: 170 NDAQLHAS-------LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGAT-LANGNR 221

Query: 79  VDEAIKLIEKAISID 93
             EA+    +A+ I+
Sbjct: 222 PQEALDAYNRALDIN 236

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 45.7 bits (109), Expect = 5e-07
 Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 37  VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
            L +      A + +NR++ ++P    +  + A+         D A K + +AI +    
Sbjct: 215 TLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS-YSNMSQYDLAAKQLVRAIYMQVGG 273

Query: 97  MFAYETLG 104
                   
Sbjct: 274 TTPTGEAS 281

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 39.2 bits (92), Expect = 8e-05
 Identities = 9/85 (10%), Positives = 20/85 (23%), Gaps = 18/85 (21%)

Query: 19  NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM------ 72
            +V    N+       A    +   +D A +   R+I +     +     +         
Sbjct: 238 GYVRVMYNM-------AVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWD 290

Query: 73  -----LQARGNVDEAIKLIEKAISI 92
                L      D       + +  
Sbjct: 291 FFRMLLNVMNRPDLVELTYAQNVEP 315

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 51.6 bits (125), Expect = 9e-10
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 8/75 (10%)

Query: 19  NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 78
              +   N+             Q D+D A EY+ +++ +DP +A  + +        +G+
Sbjct: 67  RSAEAWYNL-------GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG-NAYYKQGD 118

Query: 79  VDEAIKLIEKAISID 93
            DEAI+  +KA+ +D
Sbjct: 119 YDEAIEYYQKALELD 133

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 51.6 bits (125), Expect = 9e-10
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 19  NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN 78
              +   N+             Q D+D A EY+ +++ +DP +A  + +        +G+
Sbjct: 33  RSAEAWYNL-------GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG-NAYYKQGD 84

Query: 79  VDEAIKLIEKAISIDKSCMFAYETLGTI 106
            DEAI+  +KA+ +D     A+  LG  
Sbjct: 85  YDEAIEYYQKALELDPRSAEAWYNLGNA 112

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 50.5 bits (122), Expect = 2e-09
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 37  VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
               Q D+D A EY+ +++ +DP +A  + +        +G+ DEAI+  +KA+ +D   
Sbjct: 10  AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG-NAYYKQGDYDEAIEYYQKALELDPRS 68

Query: 97  MFAYETLGTI 106
             A+  LG  
Sbjct: 69  AEAWYNLGNA 78

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 51.1 bits (123), Expect = 1e-09
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 38  LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM 97
              Q+DF+ A  +++++I +DP N + Y ++A +         E ++  EKA+ + +   
Sbjct: 18  AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAV-YFEEKKFAECVQFCEKAVEVGRETR 76

Query: 98  FAYET 102
             Y+ 
Sbjct: 77  ADYKL 81

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 46.1 bits (110), Expect = 9e-08
 Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM------LQARGNVDEAIKLIEK 88
           A V  +++ F    ++  +++ V  E  + Y   A  M       Q + ++  A++   +
Sbjct: 49  AAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHR 108

Query: 89  AISIDKS 95
           ++S  + 
Sbjct: 109 SLSEFRD 115

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 11/85 (12%), Positives = 27/85 (31%), Gaps = 1/85 (1%)

Query: 9   RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
            +  ++  F   V      +EA         + E    A     R + + P+N +  +  
Sbjct: 79  DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMAL 138

Query: 69  AMLMLQARGNVDEAIKLIEKAISID 93
           A+          +A +++   +   
Sbjct: 139 AVS-FTNESLQRQACEILRDWLRYT 162

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 1/70 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
               + + D   A   F  +++ DP++   + +              AI  + + + +  
Sbjct: 71  GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTT-QAENEQELLAISALRRCLELKP 129

Query: 95  SCMFAYETLG 104
               A   L 
Sbjct: 130 DNQTALMALA 139

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 9/70 (12%), Positives = 25/70 (35%), Gaps = 1/70 (1%)

Query: 37  VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC 96
            L +    + A   + R++ + P       +  +      G   EA++   +A+++ +  
Sbjct: 260 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGIS-CINLGAHREAVEHFLEALNMQRKS 318

Query: 97  MFAYETLGTI 106
                  G +
Sbjct: 319 RGPRGEGGAM 328

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 37  VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
           +     ++D A + F  ++ V P +  L+       L      +EA+    +A+ + 
Sbjct: 226 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG-ATLANGNQSEEAVAAYRRALELQ 281

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.4 bits (108), Expect = 5e-07
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 41  QEDFDGAEEYFNRSIRVDPENASLYVHRAM---LMLQARGNVDEAIKLIEKAISIDKSCM 97
            +  D     +++  + + EN      +     L     G++  A+ L E A+  D   M
Sbjct: 39  SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM 98

Query: 98  FAYETLGTI 106
            A++ LGT 
Sbjct: 99  EAWQYLGTT 107

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 28/113 (24%)

Query: 8   ERVEQSLKEFR-------NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE 60
           E+   ++   R       +               A    ++     A E     +R  P 
Sbjct: 112 EQELLAISALRRCLELKPDNQTALMA-------LAVSFTNESLQRQACEILRDWLRYTPA 164

Query: 61  NASLY--------------VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA 99
            A L                 R +  L +     E  +L   A+ +D + +  
Sbjct: 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 217

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 8/84 (9%), Positives = 23/84 (27%), Gaps = 17/84 (20%)

Query: 19  NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM------ 72
            ++ +  N+           ++      A E+F  ++ +  ++         +       
Sbjct: 283 GYIRSRYNL-------GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWST 335

Query: 73  ----LQARGNVDEAIKLIEKAISI 92
               L   G  D       + +S 
Sbjct: 336 LRLALSMLGQSDAYGAADARDLST 359

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 38  LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM-LMLQARGNVDEAIKLIEKAISID 93
           L+    F   +E F  ++R+DP +    V   + ++    G  D+A+     A+S+ 
Sbjct: 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 247

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.5 bits (128), Expect = 1e-09
 Identities = 11/98 (11%), Positives = 26/98 (26%), Gaps = 1/98 (1%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
           E +++ L           + V A           E          ++  + P+       
Sbjct: 240 ETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 299

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGT 105
                 QA   V   + ++ +A  +    + A  +   
Sbjct: 300 HGGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASHDG 336

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.8 bits (121), Expect = 8e-09
 Identities = 13/100 (13%), Positives = 28/100 (28%), Gaps = 1/100 (1%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
           E V++ L           + V A           E          ++  + P+       
Sbjct: 308 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 367

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE 107
                 QA   V   + ++ +A  +    + A  + G  +
Sbjct: 368 NG-GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ 406

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.8 bits (121), Expect = 9e-09
 Identities = 13/99 (13%), Positives = 26/99 (26%), Gaps = 1/99 (1%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
           E V++ L             V A           E          ++  + P+       
Sbjct: 206 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIAS 265

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                 QA   V   + ++ +A  +    + A  + G  
Sbjct: 266 NIGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASHGGG 303

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.3 bits (117), Expect = 3e-08
 Identities = 8/79 (10%), Positives = 19/79 (24%), Gaps = 1/79 (1%)

Query: 28  VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE 87
           V A           E          ++  + P              QA   +   + ++ 
Sbjct: 192 VVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGG-KQALETMQRLLPVLC 250

Query: 88  KAISIDKSCMFAYETLGTI 106
           +A  +    + A  +    
Sbjct: 251 QAHGLPPDQVVAIASNIGG 269

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.9 bits (116), Expect = 4e-08
 Identities = 13/100 (13%), Positives = 26/100 (26%), Gaps = 1/100 (1%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
           E V++ L             V A           E          ++  + P        
Sbjct: 579 ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 638

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE 107
                 QA   V   + ++ +A  +    + A  + G  +
Sbjct: 639 HDGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGK 677

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.7 bits (113), Expect = 1e-07
 Identities = 12/99 (12%), Positives = 26/99 (26%), Gaps = 1/99 (1%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
           E V++ L           + V A           E          ++  + P        
Sbjct: 409 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIAS 468

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                 QA   V + + ++ +A  +    + A  +    
Sbjct: 469 HD-GGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGG 506

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.7 bits (113), Expect = 1e-07
 Identities = 13/99 (13%), Positives = 26/99 (26%), Gaps = 1/99 (1%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
           E V+Q L           + V A                      ++  + P+       
Sbjct: 477 ETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIAS 536

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                 QA   V   + ++ +A  +    + A  + G  
Sbjct: 537 NGGG-KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 574

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 12/99 (12%), Positives = 26/99 (26%), Gaps = 2/99 (2%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
           E V++ L           + V A           E          ++  + P+       
Sbjct: 342 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 401

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                 QA   V   + ++ +A  +    + A  +    
Sbjct: 402 NGGK--QALETVQRLLPVLCQAHGLTPDQVVAIASHDGG 438

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.4 bits (107), Expect = 8e-07
 Identities = 11/99 (11%), Positives = 26/99 (26%), Gaps = 1/99 (1%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
             V++ L           + V A           E          ++  + P+       
Sbjct: 511 ATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 570

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                 QA   V   + ++ +A  + +  + A  +    
Sbjct: 571 NG-GGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGG 608

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.5 bits (102), Expect = 3e-06
 Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 1/100 (1%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
           E V++ L           + V A           E          ++  +  E       
Sbjct: 647 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIAS 706

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE 107
                 QA   V   + ++ +A  +    + A  + G  +
Sbjct: 707 NN-GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGK 745

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 11/86 (12%), Positives = 22/86 (25%), Gaps = 1/86 (1%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
           E V++ L             V A           E          ++  + P+       
Sbjct: 681 ETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 740

Query: 68  RAMLMLQARGNVDEAIKLIEKAISID 93
                 QA   V   + ++ +A  + 
Sbjct: 741 NGGG-KQALETVQRLLPVLCQAHGLT 765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 49.2 bits (118), Expect = 4e-09
 Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 41  QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 98
           Q  +  A   +++ I   P+N   Y ++AM  + L   G   +AI++ ++ +    +   
Sbjct: 17  QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL---GEYTQAIQMCQQGLRYTSTAEH 73

Query: 99  AY 100
             
Sbjct: 74  VA 75

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 51.2 bits (122), Expect = 5e-09
 Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 7/101 (6%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY----V 66
            ++       V     +VEA     +V   + D   A   F+ ++       SL     V
Sbjct: 120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMV 179

Query: 67  HRAM---LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG 104
            R +      +   +V ++++  + A+ +D     ++  LG
Sbjct: 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILG 220

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 49.2 bits (117), Expect = 3e-08
 Identities = 13/99 (13%), Positives = 35/99 (35%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
           ++++  +     F D++           +    QE+ +   +     +      A   + 
Sbjct: 48  QKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALML 107

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           +   +        EA  L+ KA+ ++   + A+  LG +
Sbjct: 108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEV 146

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 44.6 bits (105), Expect = 1e-06
 Identities = 15/112 (13%), Positives = 42/112 (37%), Gaps = 12/112 (10%)

Query: 6   DRERVEQSLKEFR-------NFVDTHSNV-VEACTLFAQVLVDQEDFDGAEEYFNRSIRV 57
               V  S+++ +           +   +     +L+     + +    A   + ++ +V
Sbjct: 191 HSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250

Query: 58  D---PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           D     N  L+++RA L  +   +  EA++   +A ++D +     +    +
Sbjct: 251 DRKASSNPDLHLNRATL-HKYEESYGEALEGFSQAAALDPAWPEPQQREQQL 301

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 8/82 (9%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
            + E+  ++  +  D H N        A +   +E +  A E F+++  +DP        
Sbjct: 245 AQAEKVDRKASSNPDLHLN-------RATLHKYEESYGEALEGFSQAAALDPAWPEPQQR 297

Query: 68  RAMLMLQARGNVDEAIKLIEKA 89
              L L+    +   ++   K 
Sbjct: 298 EQQL-LEFLSRLTSLLESKGKT 318

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 50.9 bits (121), Expect = 7e-09
 Identities = 11/89 (12%), Positives = 31/89 (34%)

Query: 7   RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYV 66
            E+++ +   F+   D  S  +      A   + Q  ++ AE     ++  D  +    +
Sbjct: 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238

Query: 67  HRAMLMLQARGNVDEAIKLIEKAISIDKS 95
           +  +L        +   + + +     +S
Sbjct: 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 45.9 bits (108), Expect = 5e-07
 Identities = 9/106 (8%), Positives = 31/106 (29%), Gaps = 6/106 (5%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
             +  + +L+            +E   +  Q+L+  +  D A +   +    D +     
Sbjct: 113 YDQNPDAALRTLHQGDS-----LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQ 167

Query: 66  VHRAM-LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
           +  A   +      + +A  + ++        +          + +
Sbjct: 168 LATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ 213

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 49.7 bits (119), Expect = 7e-09
 Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 41  QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 100
           ++++  A + + +++ + P N     +RA     + G  ++A +  E A  +D     A+
Sbjct: 24  RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS-GQHEKAAEDAELATVVDPKYSKAW 82

Query: 101 ETLGT 105
             LG 
Sbjct: 83  SRLGL 87

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 38.9 bits (91), Expect = 6e-05
 Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           A         + A E    +  VDP+ +  +    +       +   A +  EK I  + 
Sbjct: 52  AAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA-RFDMADYKGAKEAYEKGIEAEG 110

Query: 95  S 95
           +
Sbjct: 111 N 111

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 50.9 bits (121), Expect = 7e-09
 Identities = 14/102 (13%), Positives = 38/102 (37%), Gaps = 3/102 (2%)

Query: 7   RERVEQSLKEFRNFVDTHSNVVEACTLF-AQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
            E + + ++    F    +       +  +Q  +D++         +  + +   N    
Sbjct: 219 SELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI 278

Query: 66  VHRAM-LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           +++   +    +G  DE+ + I   I ++ S +  Y  LG +
Sbjct: 279 IYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKV 319

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 48.8 bits (117), Expect = 8e-09
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 41  QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 98
           + D+  A  ++N +++ DPENA LY +RA     L        A+   +  I +D   + 
Sbjct: 26  KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL---MEFQRALDDCDTCIRLDSKFIK 82

Query: 99  AY 100
            Y
Sbjct: 83  GY 84

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           A  L    +F  A +  +  IR+D +    Y+ +A   L A     +A +  E A+ +D 
Sbjct: 54  AACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC-LVAMREWSKAQRAYEDALQVDP 112

Query: 95  SCMFAYETL 103
           S   A E +
Sbjct: 113 SNEEAREGV 121

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 48.8 bits (117), Expect = 9e-09
 Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 38  LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKS 95
              + D+  A +++  +I+ +P++A LY +RA     L        A+K  E+ I ++ +
Sbjct: 26  CFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL---LEFQLALKDCEECIQLEPT 82

Query: 96  CMFAY 100
            +  Y
Sbjct: 83  FIKGY 87

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 42.2 bits (100), Expect = 3e-06
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           A       +F  A +     I+++P     Y  +A   L+A  +  +A+ + +KA+ +D 
Sbjct: 57  AACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA-LEAMKDYTKAMDVYQKALDLDS 115

Query: 95  SCMFAYETLGTIEVQR 110
           SC  A +      + +
Sbjct: 116 SCKEAADGYQRCMMAQ 131

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 48.9 bits (117), Expect = 1e-08
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 41  QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 98
              +  A   + R+I  +P  A  Y +RA+  L +      ++A+    +A+ +D   + 
Sbjct: 22  GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM---QQPEQALADCRRALELDGQSVK 78

Query: 99  AYETLGT 105
           A+  LG 
Sbjct: 79  AHFFLGQ 85

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           A   +  +  + A     R++ +D ++   +            + DEAI  +++A S+ K
Sbjct: 50  ALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC-QLEMESYDEAIANLQRAYSLAK 108

Query: 95  S 95
            
Sbjct: 109 E 109

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 47.4 bits (113), Expect = 2e-08
 Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPEN-ASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
           + L++Q D + A +     ++ +P      Y        +  G+  +A+   + AI ++
Sbjct: 7  IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMG-NAYRKLGDWQKALNNYQSAIELN 65

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 49.5 bits (118), Expect = 2e-08
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 41  QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 100
              +  A   + R+I  +P  A  Y +RA+  L+     ++A+    +A+ +D   + A+
Sbjct: 17  GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAH 75

Query: 101 ETLGTI 106
             LG  
Sbjct: 76  FFLGQC 81

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 47.7 bits (114), Expect = 2e-08
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 41  QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 98
           + D+  A + +   I+  PE+A  Y +RA     L    +  EAI    KAI  D + + 
Sbjct: 17  KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL---MSFPEAIADCNKAIEKDPNFVR 73

Query: 99  AYETLGT 105
           AY    T
Sbjct: 74  AYIRKAT 80

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 39.2 bits (92), Expect = 4e-05
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 1/76 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           A  L     F  A    N++I  DP     Y+ +A     A      A++ ++ A + D 
Sbjct: 45  AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA-QIAVKEYASALETLDAARTKDA 103

Query: 95  SCMFAYETLGTIEVQR 110
                       ++  
Sbjct: 104 EVNNGSSAREIDQLYY 119

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 47.1 bits (113), Expect = 3e-08
 Identities = 11/66 (16%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 37  VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI--DK 94
           +  D  ++  + + F ++I++DPE +  ++ +    L      +EA+      I++  D+
Sbjct: 15  LQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKA-LYNLERYEEAVDCYNYVINVIEDE 73

Query: 95  SCMFAY 100
                +
Sbjct: 74  YNKDVW 79

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 43.2 bits (103), Expect = 7e-07
 Identities = 9/59 (15%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 37  VLVDQEDFDGAEEYFNR--SIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
            L + E ++ A + +N   ++  D  N  ++  +A   L+     +   ++ E    ++
Sbjct: 49  ALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA-LRYIEGKEVEAEIAEARAKLE 106

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 46.8 bits (112), Expect = 4e-08
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 41  QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 98
             + D A + ++ +I++DP N  LY +R+         G+  +A +   K + +      
Sbjct: 17  VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK---GDYQKAYEDGCKTVDLKPDWGK 73

Query: 99  AYETLGT 105
            Y     
Sbjct: 74  GYSRKAA 80

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 41  QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 100
           + D+  A E   +++ + P+    Y  +A   L+     +EA +  E+ +  + +     
Sbjct: 51  KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA-LEFLNRFEEAKRTYEEGLKHEANNPQLK 109

Query: 101 ETLGTIEVQ 109
           E L  +E +
Sbjct: 110 EGLQNMEAR 118

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 46.6 bits (111), Expect = 4e-08
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
                  ++  AE      ++  P + +L V  AM +L   G  ++ ++L+ K I+  
Sbjct: 34 GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM-VLYNLGRYEQGVELLLKIIAET 91

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 46.5 bits (111), Expect = 6e-08
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 41  QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 98
           ++DFD A ++++++  +DP N +   ++A         G+ ++  +L EKAI + +    
Sbjct: 17  KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK---GDYNKCRELCEKAIEVGRENRE 73

Query: 99  AYET 102
            Y  
Sbjct: 74  DYRQ 77

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM------LQARGNVDEAIKLIEK 88
           A V  ++ D++   E   ++I V  EN   Y   A                 +AI    K
Sbjct: 45  AAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNK 104

Query: 89  AISIDKS 95
           +++  ++
Sbjct: 105 SLAEHRT 111

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 41  QEDFDGAEEYFNRSIRVDPENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKSCMF 98
            +D++ A ++++++I ++P NA  Y +R++  L          A+    +AI +DK  + 
Sbjct: 26  AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT---ECYGYALGDATRAIELDKKYIK 82

Query: 99  AY 100
            Y
Sbjct: 83  GY 84

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 1/73 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           +   +  E +  A     R+I +D +    Y  RA     A G    A++  E  + +  
Sbjct: 54  SLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS-NMALGKFRAALRDYETVVKVKP 112

Query: 95  SCMFAYETLGTIE 107
               A        
Sbjct: 113 HDKDAKMKYQECN 125

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 45.6 bits (108), Expect = 5e-07
 Identities = 12/90 (13%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASL 64
            Q+ + ++     +  +++  +LFA   +D + ++ A  +F ++  +             
Sbjct: 167 RQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRT 226

Query: 65  YVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
             +   L   ++   ++AI   ++AI++ +
Sbjct: 227 LYNIG-LCKNSQSQYEDAIPYFKRAIAVFE 255

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 10/94 (10%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLF--AQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
              +++                  TL+        Q  ++ A  YF R+I V  E+  L 
Sbjct: 205 SHFQKAYSMAEAEKQPQL---MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261

Query: 66  -VHRAMLML----QARGNVDEAIKLIEKAISIDK 94
            + +A  ++       G +D+A +   K ++  +
Sbjct: 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 45.4 bits (107), Expect = 5e-07
 Identities = 12/91 (13%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
               Q L+   + ++  +    A      V+ + + +D   +Y ++ ++ D  N S++  
Sbjct: 180 RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQ 239

Query: 68  RAMLMLQARG-----NVDEAIKLIEKAISID 93
           R  ++    G      ++  ++   + I + 
Sbjct: 240 RYFVISNTTGYNDRAVLEREVQYTLEMIKLV 270

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 42.4 bits (99), Expect = 8e-06
 Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD-QEDFDGAEEYFNRSIRVDPENASL 64
             ER E++ K  R+ ++ ++           +L   Q+D      Y    I   P+N  +
Sbjct: 109 RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168

Query: 65  YVHRAMLMLQARGNVDEAIKLIEKAISID 93
           + HR +L ++   +  + ++ I   ++ D
Sbjct: 169 WHHRRVL-VEWLRDPSQELEFIADILNQD 196

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 12/72 (16%), Positives = 28/72 (38%)

Query: 29  EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 88
           +    F  VL   E  + A +    +I ++  N +++  R +L+   + ++ E +  I  
Sbjct: 98  DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA 157

Query: 89  AISIDKSCMFAY 100
            I         +
Sbjct: 158 IIEEQPKNYQVW 169

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 40.4 bits (94), Expect = 3e-05
 Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 40  DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA 99
           D+   +   +Y    I++ P N S + +   ++      + +   L+ + + +  S    
Sbjct: 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD--RGLSKYPNLLNQLLDLQPSHSSP 309

Query: 100 Y 100
           Y
Sbjct: 310 Y 310

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 40.4 bits (94), Expect = 3e-05
 Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 37  VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
           ++    D     E+    +  D +N   + HR  + +Q     D  ++ +++ +  D  
Sbjct: 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV-IQEFKLWDNELQYVDQLLKEDVR 232

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 45.6 bits (108), Expect = 6e-07
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 9/90 (10%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLF--AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
           E +L+   +  +       A +L   A       D   A E+F ++ +V  E     + +
Sbjct: 206 EAALELAMDIQNDRF---IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262

Query: 69  AMLML----QARGNVDEAIKLIEKAISIDK 94
            +  L       G   +A + IE+ +    
Sbjct: 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 44.4 bits (105), Expect = 1e-06
 Identities = 12/93 (12%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
            Q+L  ++N        +++  + A    D + +D A  +   ++ +  +   +   R +
Sbjct: 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD---IQNDRFI 221

Query: 71  LML--------QARGNVDEAIKLIEKAISIDKS 95
            +            G+   A++  +KA  + + 
Sbjct: 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 9/97 (9%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLF--AQVLVDQEDFDGAEEYFNRSIRV------ 57
           +R  V + L+         + +++  +LF       DQ+++  A  Y+  + +       
Sbjct: 77  NRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD 136

Query: 58  DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           D E A  +   A            ++  I +A+ I +
Sbjct: 137 DIEKAEFHFKVAEA-YYHMKQTHVSMYHILQALDIYQ 172

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 10/82 (12%), Positives = 23/82 (28%), Gaps = 2/82 (2%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
           +++ K  R        + +     +  L        A ++    +      +  +     
Sbjct: 246 QKAAKVSRE--KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303

Query: 71  LMLQARGNVDEAIKLIEKAISI 92
           L LQA        + I   +S 
Sbjct: 304 LFLQAVYKETVDERKIHDLLSY 325

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 9/92 (9%), Positives = 20/92 (21%), Gaps = 9/92 (9%)

Query: 11  EQSLKEFRNFV--DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD------PENA 62
           ++ L                       +    +        +              P   
Sbjct: 219 KEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVT 278

Query: 63  SLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           +   +   L  + +G  + A  L E A+   K
Sbjct: 279 TTLKNLGAL-YRRQGKFEAAETLEEAAMRSRK 309

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 11  EQSLKEFRN-FVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRV------DPEN 61
           +Q+L++        H +V     + A V  DQ  +  A    N +  IR        P  
Sbjct: 51  KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAV 110

Query: 62  ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
           A+   + A+L    RG   EA  L ++A+ I + 
Sbjct: 111 AATLNNLAVL-YGKRGKYKEAEPLCKRALEIREK 143

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 10/94 (10%)

Query: 11  EQSLKEFRNFV-DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRVD------PEN 61
             +L      +   H  V       A +   +  +  AE    R+  IR        P+ 
Sbjct: 93  NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV 152

Query: 62  ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
           A    + A+L  Q +G  +E     ++A+ I ++
Sbjct: 153 AKQLNNLALL-CQNQGKYEEVEYYYQRALEIYQT 185

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 8/90 (8%), Positives = 22/90 (24%), Gaps = 9/90 (10%)

Query: 11  EQSLKEFRNFV--DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD------PENA 62
           ++ L           + +         +    ++    +  Y              P   
Sbjct: 193 KEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252

Query: 63  SLYVHRAMLMLQARGNVDEAIKLIEKAISI 92
           +       L  + +G ++ A  L + A   
Sbjct: 253 TTLRSLGAL-YRRQGKLEAAHTLEDCASRN 281

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 11  EQSLKEFRNFV-DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRVD------PEN 61
           +Q+L++        H +V     + A V  DQ  +  A    N +  IR        P  
Sbjct: 25  KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84

Query: 62  ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
           A+   + A+L    RG   EA  L ++A+ I + 
Sbjct: 85  AATLNNLAVL-YGKRGKYKEAEPLCKRALEIREK 117

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 10/94 (10%)

Query: 11  EQSLKEFRN-FVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRVD------PEN 61
             +L          H  V       A +   +  +  AE    R+  IR        P+ 
Sbjct: 67  NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV 126

Query: 62  ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
           A    + A+L  Q +G  +E      +A+ I  +
Sbjct: 127 AKQLNNLALL-CQNQGKAEEVEYYYRRALEIYAT 159

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 41  QEDFDGAEEYFNRSIRVDP---ENASLYVHRAM--LMLQARGNVDEAIKLIEKAISIDKS 95
             D+ GA   + +++ +D    + A L+ +RA   L L    + D+A     KAI  D  
Sbjct: 41  CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL---EDYDKAETEASKAIEKDGG 97

Query: 96  CMFAY 100
            + A 
Sbjct: 98  DVKAL 102

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 43.3 bits (102), Expect = 3e-06
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD------PENASL 64
           +Q+   F N  +      E     +++LV Q+ FD A     +   +       P     
Sbjct: 139 QQAAAVFENE-ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197

Query: 65  YVHRAMLMLQARGNVDEAIKLIEKAISID 93
            + + ++ L  R +   A K + ++ SI 
Sbjct: 198 CIAQVLVQL-HRADYVAAQKCVRESYSIP 225

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 13/89 (14%), Positives = 37/89 (41%), Gaps = 6/89 (6%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----ASLYV 66
           + + ++     D  S++     L  + L +  D      +F  +I+   E+    +++Y 
Sbjct: 32  DGNSQQGSG-SDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYS 90

Query: 67  HRAMLMLQARGNVDEAIKLIEKAISIDKS 95
                     G+ ++A++  +  +++ KS
Sbjct: 91  QLGNA-YFYLGDYNKAMQYHKHDLTLAKS 118

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 42.3 bits (100), Expect = 8e-06
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 16/92 (17%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLF--AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
           +++L       +      EA + +          +F+ A EY NR + +  E   L    
Sbjct: 287 KRTLALAVELGEREV---EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE---LGDRI 340

Query: 69  AM--------LMLQARGNVDEAIKLIEKAISI 92
                         A G  + A+K  E+ + +
Sbjct: 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 12/93 (12%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTL--FAQVLVDQEDFDGAEEYFNRS--IRVD----PENA 62
           ++ L+  R F D  +   E           +    F+ A E++ R+  + V+       A
Sbjct: 247 QERLRIAREFGDRAA---ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303

Query: 63  SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
                            + AI+   + ++I + 
Sbjct: 304 QSCYSLGNT-YTLLHEFNTAIEYHNRHLAIAQE 335

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV------DPENASL 64
           + +++      +    +    +          D++ A +Y    + +          A  
Sbjct: 72  QAAIQAGT---EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128

Query: 65  YVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
             +     L+  G  DEA    E+ +++ + 
Sbjct: 129 SGNLGNT-LKVMGRFDEAAICCERHLTLARQ 158

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 12/93 (12%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
           +++L   R   D  +   ++C          +D++ A +Y  + + +  E   L      
Sbjct: 247 KKTLLLARQLKD-RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE---LKDRIGE 302

Query: 71  --------LMLQARGNVDEAIKLIEKAISIDKS 95
                       A GN D+A+   EK + I + 
Sbjct: 303 GRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 8/91 (8%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRVD----PENASL 64
           +++L   R   D  +   ++C          +D++ A +Y  +   I  +          
Sbjct: 251 KKTLLLARQLKD-RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRA 309

Query: 65  YVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
                     A GN D+A+   EK + I + 
Sbjct: 310 CWSLGNA-YTALGNHDQAMHFAEKHLEISRE 339

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 36.5 bits (85), Expect = 8e-04
 Identities = 11/91 (12%), Positives = 25/91 (27%), Gaps = 8/91 (8%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS--IRVDPEN----ASL 64
           E++L       D  +    A            +F  A     +   I  +  +       
Sbjct: 171 EENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 229

Query: 65  YVHRAMLMLQARGNVDEAIKLIEKAISIDKS 95
           Y +         G  + A +  +K + + + 
Sbjct: 230 YSNLGNA-YIFLGEFETASEYYKKTLLLARQ 259

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 39.2 bits (91), Expect = 8e-05
 Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           A  L+  + +D A  + N  +  + +N      R        G +D A     KA     
Sbjct: 237 AACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKA-ELGQMDSARDDFRKAQKYAP 295

Query: 95  S 95
            
Sbjct: 296 D 296

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 9/86 (10%)

Query: 15  KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--------DPENASLYV 66
           K    F D++  ++        V +  +D++GA +Y  + I+             AS+++
Sbjct: 327 KMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL 386

Query: 67  HRAMLMLQARGNVDEAIKLIEKAISI 92
               L +    N     K ++KAI+I
Sbjct: 387 KLGRLYMGL-ENKAAGEKALKKAIAI 411

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           +Q  ++  D   AEE  +  ++ +  N      RA     A   +DEA + ++  +    
Sbjct: 70  SQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKA-RIAAWKLDEAEEDLKLLLRNHP 128

Query: 95  S 95
           +
Sbjct: 129 A 129

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 13/112 (11%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV-----DPEN-ASL 64
            +  +   +  +            A V +   D  GA + + +S+       D    A  
Sbjct: 90  LEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA 149

Query: 65  YVHRAMLMLQARGNVDEAIKLIEKAISI-----DKSCM-FAYETLGTIEVQR 110
           +     L  Q   N+ EA +   +A  I     D   +      L  +E   
Sbjct: 150 FRGLGDL-AQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHH 200

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 1/60 (1%)

Query: 35 AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
             L+ Q +   A                + + +A  +L+     + A +L+       +
Sbjct: 13 VSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLET-KQFELAQELLATIPLEYQ 71

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           A   +  + F  A E  N+++ +D  N      R      A  + + A    +K + +  
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEA-HLAVNDFELARADFQKVLQLYP 261

Query: 95  S 95
           +
Sbjct: 262 N 262

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 41  QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 100
            +D++ A ++++++I ++P NA  Y +R++  L+       A+    +AI +DK  +  Y
Sbjct: 19  AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGY 77

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           A      +D+  A ++ ++ +++D  N        +      G ++EA + + KA S++ 
Sbjct: 95  ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVA-NMYFGFLEEAKENLYKAASLNP 153

Query: 95  S 95
           +
Sbjct: 154 N 154

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 36.8 bits (84), Expect = 8e-04
 Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 29/136 (21%)

Query: 5   GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDF----------------DGAE 48
             ++ V  +L+ F   +     +V+      +VL     F                    
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQK--FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 49  EYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID------KSCMFAYET 102
           E  +R    +   A   V R    L+ R  + E      K + ID      K+ + A + 
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP--AKNVLIDGVLGSGKTWV-ALDV 170

Query: 103 LGTIEVQRTFV--VLW 116
             + +VQ      + W
Sbjct: 171 CLSYKVQCKMDFKIFW 186

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	116
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.94
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.94
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.92
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.91
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.91
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.91
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.9
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.9
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.9
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.9
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.89
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.89
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.89
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.89
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.89
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.88
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.88
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.88
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.88
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.88
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.87
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.87
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.87
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.87
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.87
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.86
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.86
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.86
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.86
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.86
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.86
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.86
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.86
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.86
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.86
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.85
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.85
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.85
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.85
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.85
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.85
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.84
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.84
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.84
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.84
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.83
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.83
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.83
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.83
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.83
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.83
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.83
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.83
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.83
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.83
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.83
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.83
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.83
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.83
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.82
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.82
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.82
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.82
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.82
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.82
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.82
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.82
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.81
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.81
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.81
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.81
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.81
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.81
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.8
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.8
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.8
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.8
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.8
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.8
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.8
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.8
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.8
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.8
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.8
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.79
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.79
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.79
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.79
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.79
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.79
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.78
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.78
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.78
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.78
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.78
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.78
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.77
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.77
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.77
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.77
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.76
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.76
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.76
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.76
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.76
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.76
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.75
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.75
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.75
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.75
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.74
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.74
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.74
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.74
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.74
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.73
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.72
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.72
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.72
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.72
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.71
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.71
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.71
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.71
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.71
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.71
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.7
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.7
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.7
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.69
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.69
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.68
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.68
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.68
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.68
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.67
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.66
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.66
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.64
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.64
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.64
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.63
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.63
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.63
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.62
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.62
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.62
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.62
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.61
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.61
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.6
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.59
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.59
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.59
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.59
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.58
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.58
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.58
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.57
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.57
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.57
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.57
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.56
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.56
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.56
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.56
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.55
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.55
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.54
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.54
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.54
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.54
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.53
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.53
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.53
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.53
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.53
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.52
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.49
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.49
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.47
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.47
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.44
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.43
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.43
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.42
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.42
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.41
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.39
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	99.38
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	99.37
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.36
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.31
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.31
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.31
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.29
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.29
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.27
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.25
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.24
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	99.2
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.16
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.14
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	99.13
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	99.03
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.01
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.0
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.0
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.99
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.98
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.97
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.95
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.92
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.9
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.9
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.86
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.78
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.77
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.75
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.69
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.61
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.6
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.54
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.49
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.48
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.44
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.42
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.34
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	98.31
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.24
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.23
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.18
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	98.16
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	97.83
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.75
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.53
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	97.51
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	97.37
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	97.05
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.86
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.84
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.78
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	96.75
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.71
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	96.61
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.52
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.33
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.1
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.9
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.59
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	95.45
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.07
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	94.12
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.2
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	93.18
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	93.17
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	92.85
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	92.76
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	92.44
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.27
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	92.09
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	91.18
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	90.51
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	90.07
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	89.45
2cfu_A	658	SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1	89.44
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	88.92
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	88.86
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	87.97
2ijq_A	161	Hypothetical protein; structural genomics, PSI, pr	87.7
1om2_A	95	Protein (mitochondrial import receptor subunit TOM	87.4
3efz_A	268	14-3-3 protein; 14-3-3, cell regulation, structura	86.62
2npm_A	260	14-3-3 domain containing protein; cell regulator p	86.2
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	85.48
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	85.46
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	84.93
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	84.91
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	84.83
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	84.32
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	83.59
2rpa_A	78	Katanin P60 ATPase-containing subunit A1; AAA ATPa	83.54
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	83.52
2o8p_A	227	14-3-3 domain containing protein; signaling protei	83.32
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	82.76
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	81.9
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	81.6
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	80.98

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.94  E-value=2.8e-25  Score=116.00  Aligned_cols=103  Identities=17%  Similarity=0.159  Sum_probs=98.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +.+.|+|++|++.|+++++.+|.++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++.. +|++++|+
T Consensus        23 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~  101 (126)
T 4gco_A           23 YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA-MREWSKAQ  101 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CCCHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999888 99999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHH
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIE  107 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~  107 (116)
                      +.++++++++|+++.++..++.++
T Consensus       102 ~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A          102 RAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999998764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.94  E-value=1e-25  Score=120.80  Aligned_cols=112  Identities=12%  Similarity=0.157  Sum_probs=94.4

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      ++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+..|+++++++|+++.+|+.+|.++.. .|++++|
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A   84 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-EENTDKA   84 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCchHHH
Confidence            456778888888888888888888888888888888888888888888888888888888888888888777 7888888


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      +..++++++.+|+++.++..+|.++...|++++
T Consensus        85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  117 (150)
T 4ga2_A           85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDG  117 (150)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence            888888888888888888888888888887754

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.92  E-value=2.9e-24  Score=115.12  Aligned_cols=109  Identities=16%  Similarity=0.184  Sum_probs=102.0

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      +|...|++++|++.|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|+++.+++.+|.++.. .|++++|
T Consensus        40 ~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~a  118 (150)
T 4ga2_A           40 LYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCK-NDVTDGR  118 (150)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HCSSSSH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHH
Confidence            456789999999999999999999999999999999999999999999999999999999999999999888 8999877


Q ss_pred             HHH-HHHHHhcCCCcHHHHHHHHHHHHhhcc
Q psy12719         83 IKL-IEKAISIDKSCMFAYETLGTIEVQRTF  112 (116)
Q Consensus        83 ~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~  112 (116)
                      .+. ++++++++|+++.++...+.++...|+
T Consensus       119 a~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          119 AKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            765 589999999999999999999988775

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.91  E-value=4.2e-25  Score=118.48  Aligned_cols=90  Identities=16%  Similarity=0.131  Sum_probs=45.5

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      ..|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.++|+++.+++++|.++.. +|++++|+..
T Consensus        48 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~-lg~~~eA~~~  126 (151)
T 3gyz_A           48 NKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR-LKAPLKAKEC  126 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHH
Confidence            344455555555555555555555555555555555555555555555555555555555555555444 4555555555


Q ss_pred             HHHHHhcCCCc
Q psy12719         86 IEKAISIDKSC   96 (116)
Q Consensus        86 ~~~~~~~~~~~   96 (116)
                      |+++++..|+.
T Consensus       127 ~~~al~l~~~~  137 (151)
T 3gyz_A          127 FELVIQHSNDE  137 (151)
T ss_dssp             HHHHHHHCCCH
T ss_pred             HHHHHHhCCCH
Confidence            55555554443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.91  E-value=1.2e-23  Score=135.39  Aligned_cols=112  Identities=19%  Similarity=0.264  Sum_probs=86.0

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +.++|++++|+..|+++++.+|++..++.++|.++...|++++|+..|+++++++|+++.+++++|.++.. +|++++|+
T Consensus        19 ~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~-~g~~~~A~   97 (723)
T 4gyw_A           19 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE-MQDVQGAL   97 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHH
Confidence            45667777777777777777777777777777777777777777777777777777777777777777666 77777777


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.++++++++|+++.++.++|.++..+|++++|
T Consensus        98 ~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eA  130 (723)
T 4gyw_A           98 QCYTRAIQINPAFADAHSNLASIHKDSGNIPEA  130 (723)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            777777777777777777777777777777654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.91  E-value=8.8e-24  Score=119.20  Aligned_cols=112  Identities=13%  Similarity=0.021  Sum_probs=87.0

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhc-------
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR-------   76 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-------   76 (116)
                      +...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++.. .       
T Consensus        15 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~~~~~~~~   93 (217)
T 2pl2_A           15 LYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA-LYRQAEDR   93 (217)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHTCSSH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hhhhhhhh
Confidence            34567778888888888888888888888888888888888888888888888888887778888877666 7       


Q ss_pred             ----CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         77 ----GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        77 ----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                          |++++|+..++++++.+|+++.++..+|.++...|++++|
T Consensus        94 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A  137 (217)
T 2pl2_A           94 ERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKA  137 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHH
Confidence                7788888888888888887777777788777777777653

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.90  E-value=4e-23  Score=115.87  Aligned_cols=108  Identities=17%  Similarity=0.231  Sum_probs=102.7

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHH----------------HHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTL----------------FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH   67 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   67 (116)
                      +...|++++|+..|++++..+|+++.++..                +|.++...|++++|+..|+++++.+|+++.+++.
T Consensus        14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   93 (208)
T 3urz_A           14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEA   93 (208)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            456899999999999999999999999999                9999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcc
Q psy12719         68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTF  112 (116)
Q Consensus        68 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  112 (116)
                      +|.++.. .|++++|+..++++++.+|+++.++..+|.++...|+
T Consensus        94 lg~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           94 CAEMQVC-RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence            9999888 8999999999999999999999999999999877654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.90  E-value=1e-22  Score=131.09  Aligned_cols=113  Identities=19%  Similarity=0.265  Sum_probs=108.6

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      ++.++|++++|+..|+++++++|+++.++.++|.++...|++++|++.|+++++++|+++.+++++|.++.. +|++++|
T Consensus        52 ~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~-~g~~~eA  130 (723)
T 4gyw_A           52 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD-SGNIPEA  130 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHH
Confidence            356789999999999999999999999999999999999999999999999999999999999999999887 9999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ++.++++++++|+++.++.++|.++..+|++++|
T Consensus       131 i~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A          131 IASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            9999999999999999999999999999998764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.90  E-value=2.1e-22  Score=108.00  Aligned_cols=110  Identities=12%  Similarity=0.071  Sum_probs=102.8

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      ..+++-.+...+.+++..+|+++.+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++.. .|++++|+..
T Consensus        14 ~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~Ai~~   92 (151)
T 3gyz_A           14 AVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI-KEQFQQAADL   92 (151)
T ss_dssp             HHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HccHHHHHHH
Confidence            345566666778899999999999999999999999999999999999999999999999999999887 9999999999


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         86 IEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      |++++.++|+++.+++++|.++..+|++++|
T Consensus        93 ~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA  123 (151)
T 3gyz_A           93 YAVAFALGKNDYTPVFHTGQCQLRLKAPLKA  123 (151)
T ss_dssp             HHHHHHHSSSCCHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999999999875

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.90  E-value=1.1e-22  Score=114.66  Aligned_cols=106  Identities=15%  Similarity=0.107  Sum_probs=56.1

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE   87 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   87 (116)
                      |++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.+++.+|.++.. .|++++|+..++
T Consensus        98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~-~g~~~~A~~~~~  175 (217)
T 2pl2_A           98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLS-MGRLDEALAQYA  175 (217)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH-HTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            555555555555555555555555555555555555555555555555555 555555555555444 555555555555


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         88 KAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      ++++.+|+++.++..++.++...|++++
T Consensus       176 ~al~~~P~~~~~~~~la~~~~~~g~~~~  203 (217)
T 2pl2_A          176 KALEQAPKDLDLRVRYASALLLKGKAEE  203 (217)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHTC------
T ss_pred             HHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence            5555555555555555555555555554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.89  E-value=1.1e-22  Score=106.17  Aligned_cols=97  Identities=18%  Similarity=0.196  Sum_probs=90.9

Q ss_pred             HHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12719         19 NFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF   98 (116)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   98 (116)
                      ++..++|+.+..+..+|..++..|++++|+..|+++++.+|.++.+++++|.++.. +|++++|+..++++++++|+++.
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~   82 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LMEFQRALDDCDTCIRLDSKFIK   82 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hccHHHHHHHHHHHHHhhhhhhH
Confidence            44568899999999999999999999999999999999999999999999999888 99999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccccC
Q psy12719         99 AYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        99 ~~~~l~~~~~~~~~~~~a  116 (116)
                      +|..+|.++..+|++++|
T Consensus        83 a~~~lg~~~~~~~~~~~A  100 (126)
T 4gco_A           83 GYIRKAACLVAMREWSKA  100 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHCCCHHHH
Confidence            999999999999998865

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=7.5e-22  Score=102.65  Aligned_cols=105  Identities=15%  Similarity=0.144  Sum_probs=99.6

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.+++.+|.++.. .|++++|+
T Consensus        14 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~   92 (126)
T 3upv_A           14 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VKEYASAL   92 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HhCHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999888 99999999


Q ss_pred             HHHHHHHhcC------CCcHHHHHHHHHHHHh
Q psy12719         84 KLIEKAISID------KSCMFAYETLGTIEVQ  109 (116)
Q Consensus        84 ~~~~~~~~~~------~~~~~~~~~l~~~~~~  109 (116)
                      ..+++++..+      |+++.++..++.+...
T Consensus        93 ~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           93 ETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            9999999999      9999999988887654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.89  E-value=9e-22  Score=108.09  Aligned_cols=112  Identities=19%  Similarity=0.248  Sum_probs=87.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC-------------------------
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-------------------------   58 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------------------------   58 (116)
                      +...|++++|++.|+++++.+|+++.++..+|.++...|++++|+..+.+++...                         
T Consensus        15 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   94 (184)
T 3vtx_A           15 KRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAID   94 (184)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHH
Confidence            4567889999999999999999998888888888888888877777777766555                         


Q ss_pred             ---------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         59 ---------PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        59 ---------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                               |.+..++..+|.++.. .|++++|++.++++++.+|+++.++..+|.++..+|++++|
T Consensus        95 ~~~~a~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           95 ALQRAIALNTVYADAYYKLGLVYDS-MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhCccchHHHHHHHHHHHH-hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence                     4455566677777666 78888888888888888888888888888888888877654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.89  E-value=1.6e-22  Score=122.35  Aligned_cols=109  Identities=15%  Similarity=0.198  Sum_probs=74.4

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcC-hhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED-FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      ..|++++|+..+++++..+|++..+|..+|.++...|+ +++|+..|++++.++|++..+|+++|.++.. .|++++|+.
T Consensus       109 ~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~-~g~~~eAl~  187 (382)
T 2h6f_A          109 RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LRDPSQELE  187 (382)
T ss_dssp             HTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHH
T ss_pred             HCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-ccCHHHHHH
Confidence            34566667777777777777776677777777666665 7777777777777777776677777766555 666677777


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      .+++++.++|++..+|..+|.++..+|++++
T Consensus       188 ~~~kal~ldP~~~~a~~~lg~~~~~~g~~~e  218 (382)
T 2h6f_A          188 FIADILNQDAKNYHAWQHRQWVIQEFKLWDN  218 (382)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHhCccCHHHHHHHHHHHHHcCChHH
Confidence            7777776667666666666666666666654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.89  E-value=8.6e-23  Score=109.21  Aligned_cols=103  Identities=14%  Similarity=0.025  Sum_probs=84.2

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+++.+++.+|.++.. .|++++|+
T Consensus        31 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~~~A~  109 (148)
T 2vgx_A           31 QYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ-XGELAEAE  109 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cCCHHHHH
Confidence            45678888888888888888888888888888888888888888888888888888888888888888777 88888888


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHH
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIE  107 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~  107 (116)
                      ..++++++.+|+++........+.
T Consensus       110 ~~~~~al~~~p~~~~~~~~~~~~~  133 (148)
T 2vgx_A          110 SGLFLAQELIANXPEFXELSTRVS  133 (148)
T ss_dssp             HHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             HHHHHHHHHCcCCCcchHHHHHHH
Confidence            888888888887665544444433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.88  E-value=1.1e-21  Score=104.90  Aligned_cols=104  Identities=12%  Similarity=0.001  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12719         12 QSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAIS   91 (116)
Q Consensus        12 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   91 (116)
                      .+...|++++..+|++..+++.+|.++...|++++|+..|++++..+|.++.+|+.+|.++.. .|++++|+..+++++.
T Consensus         5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A            5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA-MGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh
Confidence            334568899999999999999999999999999999999999999999999999999999887 9999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         92 IDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        92 ~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .+|+++.+++.+|.++...|++++|
T Consensus        84 l~p~~~~~~~~lg~~~~~~g~~~~A  108 (148)
T 2vgx_A           84 MDIXEPRFPFHAAECLLQXGELAEA  108 (148)
T ss_dssp             HSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             cCCCCchHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999998864

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.88  E-value=7.3e-22  Score=104.78  Aligned_cols=106  Identities=11%  Similarity=0.003  Sum_probs=92.5

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.+|++++..+|+++.+++.+|.++.. .|++++|+
T Consensus        28 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~  106 (142)
T 2xcb_A           28 QYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ-LGDLDGAE  106 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999887 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhh
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQR  110 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~  110 (116)
                      ..+++++..+|+++........+....
T Consensus       107 ~~~~~al~~~p~~~~~~~~~~~~~~~l  133 (142)
T 2xcb_A          107 SGFYSARALAAAQPAHEALAARAGAML  133 (142)
T ss_dssp             HHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence            999999999888766555555554433

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.88  E-value=1.5e-21  Score=110.39  Aligned_cols=112  Identities=12%  Similarity=0.122  Sum_probs=105.3

Q ss_pred             ccchhcHHHHHHHHHHHHhhCC-ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHS-NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      +...|++++|+..|++++..+| .+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++.. .|++++|
T Consensus        17 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A   95 (228)
T 4i17_A           17 ALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD-MKNNQEY   95 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH-cccHHHH
Confidence            4578999999999999999998 8888999999999999999999999999999999999999999999888 8999999


Q ss_pred             HHHHHHHHhcCCCcH-------HHHHHHHHHHHhhcccccC
Q psy12719         83 IKLIEKAISIDKSCM-------FAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a  116 (116)
                      +..++++++.+|+++       .++..+|.++...|++++|
T Consensus        96 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  136 (228)
T 4i17_A           96 IATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKA  136 (228)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHH
Confidence            999999999999998       6699999999999988764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.88  E-value=6.2e-21  Score=98.98  Aligned_cols=110  Identities=15%  Similarity=0.145  Sum_probs=104.8

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..+++++...|+++.++..+|.++...|++++|+..+.+++..+|.++.+++.+|.++.. .|++++|+
T Consensus        22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~  100 (131)
T 2vyi_A           22 QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS-LNKHVEAV  100 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH-hCCHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999888 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      ..+++++..+|+++.++..++.++...|+++
T Consensus       101 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A          101 AYYKKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999998864

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.88  E-value=1.9e-21  Score=105.27  Aligned_cols=104  Identities=12%  Similarity=0.052  Sum_probs=96.1

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      .+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|+++.+++.+|.++.. .|++++|
T Consensus        20 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A   98 (164)
T 3sz7_A           20 AAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD-MADYKGA   98 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHH
Confidence            345789999999999999999999999999999999999999999999999999999999999999999888 9999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHH
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTIE  107 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~  107 (116)
                      +..+++++..+|+++.++...+...
T Consensus        99 ~~~~~~al~~~p~~~~~~~~~~l~~  123 (164)
T 3sz7_A           99 KEAYEKGIEAEGNGGSDAMKRGLET  123 (164)
T ss_dssp             HHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHH
Confidence            9999999999999988666555543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.87  E-value=2.6e-21  Score=104.55  Aligned_cols=110  Identities=12%  Similarity=0.135  Sum_probs=100.5

Q ss_pred             ccchhcHHHHHHHHHHHHhh------------------CCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDT------------------HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY   65 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   65 (116)
                      +...|+|++|+..|.+++..                  +|....++.++|.++...|++++|+..+++++.++|.++.++
T Consensus        21 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~  100 (162)
T 3rkv_A           21 LFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKAL  100 (162)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHH
Confidence            45679999999999999999                  677778999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHhhcccc
Q psy12719         66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCM-FAYETLGTIEVQRTFVV  114 (116)
Q Consensus        66 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~  114 (116)
                      +.+|.++.. +|++++|+..+++++.++|+++ .+...++.+....++..
T Consensus       101 ~~~g~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~  149 (162)
T 3rkv_A          101 FRRAKARIA-AWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK  149 (162)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHH-HhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999888 9999999999999999999998 77888888877665543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.87  E-value=3.7e-21  Score=105.61  Aligned_cols=94  Identities=16%  Similarity=0.195  Sum_probs=88.6

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...++++.|...+.+++..+|.+..++..+|.++...|++++|+..|+++++.+|.++.+++.+|.++.. +|++++|+
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~-~g~~~~A~  161 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG-KGLRDEAV  161 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH-CCCHHHHH
Confidence            34568899999999999999999999999999999999999999999999999999999999999999888 99999999


Q ss_pred             HHHHHHHhcCCCcHH
Q psy12719         84 KLIEKAISIDKSCMF   98 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~   98 (116)
                      +.++++++.+|+++.
T Consensus       162 ~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          162 KYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHHHHHHTTHHHHH
T ss_pred             HHHHHHHhCCccCHH
Confidence            999999999998753

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.87  E-value=3.5e-21  Score=100.38  Aligned_cols=108  Identities=15%  Similarity=0.174  Sum_probs=102.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.+++.+|.++.. .|++++|+
T Consensus        26 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~  104 (133)
T 2lni_A           26 CFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA-MKDYTKAM  104 (133)
T ss_dssp             HHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-HhhHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999888 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcc
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTF  112 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  112 (116)
                      ..+++++..+|.+..++..++.++..+|+
T Consensus       105 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A          105 DVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            99999999999999999999999988764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.87  E-value=2.6e-21  Score=115.35  Aligned_cols=111  Identities=14%  Similarity=0.114  Sum_probs=105.7

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh---------------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV---------------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR   68 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   68 (116)
                      +...|++++|+..|++++...|.+               ..++.++|.++...|++++|+..|++++.++|+++.+++.+
T Consensus       157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  236 (336)
T 1p5q_A          157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRR  236 (336)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            456899999999999999999998               58999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         69 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        69 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      |.++.. +|++++|+..++++++++|+++.++..++.++...|++++
T Consensus       237 g~~~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~  282 (336)
T 1p5q_A          237 GEAHLA-VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA  282 (336)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999888 9999999999999999999999999999999999988765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.87  E-value=8.7e-22  Score=119.12  Aligned_cols=110  Identities=7%  Similarity=0.082  Sum_probs=102.6

Q ss_pred             ccchhc-HHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          4 PGDRER-VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         4 ~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      +...|+ +++|+..|++++..+|++..+|..+|.++...|++++|+..|++++.++|++..+|+++|.++.. .|++++|
T Consensus       141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~-~g~~~eA  219 (382)
T 2h6f_A          141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE-FKLWDNE  219 (382)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTH
T ss_pred             HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-cCChHHH
Confidence            445675 99999999999999999999999999999999999999999999999999999999999999877 8999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHh-hcccc
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTIEVQ-RTFVV  114 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~  114 (116)
                      +..++++++.+|++..+|..+|.++.. .|..+
T Consensus       220 l~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          220 LQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcch
Confidence            999999999999999999999999998 44424

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.86  E-value=1.5e-21  Score=100.53  Aligned_cols=108  Identities=13%  Similarity=0.138  Sum_probs=93.8

Q ss_pred             chhcHHHHHHHHHHHHhh---CCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDT---HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      .+|++++|+..|+++++.   +|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++.. .|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN-LGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-cCCHHHH
Confidence            468999999999999999   588899999999999999999999999999999999999999999999888 8999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      +..+++++...|+++.+......+....+..+
T Consensus        81 ~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~  112 (117)
T 3k9i_A           81 VELLLKIIAETSDDETIQSYKQAILFYADKLD  112 (117)
T ss_dssp             HHHHHHHHHHHCCCHHHHHTHHHHHHHTTCTT
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887766666655555444

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.86  E-value=2e-21  Score=103.13  Aligned_cols=101  Identities=10%  Similarity=-0.017  Sum_probs=93.7

Q ss_pred             HHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12719         15 KEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK   94 (116)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   94 (116)
                      ..|.+++..+|++...++.+|..+...|++++|+..|++++..+|.++.+|+.+|.++.. .|++++|+..+++++..+|
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p   83 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS-LGLYEQALQSYSYGALMDI   83 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCC
Confidence            568888999999999999999999999999999999999999999999999999999887 9999999999999999999


Q ss_pred             CcHHHHHHHHHHHHhhcccccC
Q psy12719         95 SCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        95 ~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +++.++..+|.++...|++++|
T Consensus        84 ~~~~~~~~lg~~~~~~g~~~~A  105 (142)
T 2xcb_A           84 NEPRFPFHAAECHLQLGDLDGA  105 (142)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999998764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.86  E-value=1.1e-20  Score=106.90  Aligned_cols=110  Identities=15%  Similarity=0.158  Sum_probs=103.9

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH-------HHHHHHHHHHHHh
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA-------SLYVHRAMLMLQA   75 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~   75 (116)
                      ++...|++++|+..+++++..+|++..++..+|.++...|++++|+..+++++..+|+++       .++..+|.++.. 
T Consensus        51 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~-  129 (228)
T 4i17_A           51 CADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ-  129 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH-
Confidence            355789999999999999999999999999999999999999999999999999999998       669999999887 


Q ss_pred             cCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHhhccc
Q psy12719         76 RGNVDEAIKLIEKAISIDKS--CMFAYETLGTIEVQRTFV  113 (116)
Q Consensus        76 ~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~  113 (116)
                      .|++++|++.++++++.+|+  ++.++..+|.++...|+.
T Consensus       130 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          130 AGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             TTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999  999999999999988875

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.86  E-value=1.4e-20  Score=101.47  Aligned_cols=112  Identities=13%  Similarity=0.041  Sum_probs=102.2

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..|.+++..+|.+..++..+|.++...|++++|+..+++++..+|.++.+++.+|.++.. .|++++|+
T Consensus        23 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~  101 (166)
T 1a17_A           23 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRAAL  101 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hccHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999887 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHH--HHhhcccccC
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTI--EVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a  116 (116)
                      ..+.+++..+|+++.++..++.+  +...|++++|
T Consensus       102 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A  136 (166)
T 1a17_A          102 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERA  136 (166)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888555555  7777777653

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.86  E-value=1.8e-20  Score=116.16  Aligned_cols=113  Identities=13%  Similarity=0.032  Sum_probs=107.6

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      .+...|++++|++.|+++++.+|++..++..+|.++...|++++|+..++++++.+|.++.+++++|.++.. +|++++|
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~~eA   93 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRAA   93 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-HTCHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHH
Confidence            467889999999999999999999999999999999999999999999999999999999999999999888 8999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHH--HHhhcccccC
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTI--EVQRTFVVLW  116 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a  116 (116)
                      ++.++++++.+|++..++..++.+  +..+|++++|
T Consensus        94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A  129 (477)
T 1wao_1           94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERA  129 (477)
T ss_dssp             HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998  8888888876

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.86  E-value=1.7e-20  Score=104.27  Aligned_cols=111  Identities=11%  Similarity=0.103  Sum_probs=104.3

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChh----------------HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVV----------------EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH   67 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   67 (116)
                      +...|++++|+..|.+++...|.++                .++..+|.++...|++++|+.++++++..+|.++.+++.
T Consensus        48 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  127 (198)
T 2fbn_A           48 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYK  127 (198)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            4567999999999999999998887                899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        68 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      +|.++.. .|++++|+..+++++..+|+++.++..++.++...++..+
T Consensus       128 lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  174 (198)
T 2fbn_A          128 LGVANMY-FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK  174 (198)
T ss_dssp             HHHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHH-cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence            9999888 8999999999999999999999999999999988877654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.86  E-value=2.4e-21  Score=105.92  Aligned_cols=112  Identities=17%  Similarity=0.240  Sum_probs=99.1

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHH-HHHhcCCH--H
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML-MLQARGNV--D   80 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~--~   80 (116)
                      +...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++..+|.++.++..+|.+ +.. .|++  +
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~-~~~~~~~   98 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ-ASQHMTA   98 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH-TTTCCCH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-cCCcchH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999 556 8998  9


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         81 EAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +|+..+++++..+|+++.++..+|.++...|++++|
T Consensus        99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  134 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQA  134 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHH
Confidence            999999999999999999999999999999988764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.86  E-value=3.8e-21  Score=99.63  Aligned_cols=94  Identities=12%  Similarity=0.052  Sum_probs=81.2

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++.++|+++.+++.+|.++.. .|++++|+
T Consensus        27 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~-~g~~~~A~  105 (121)
T 1hxi_A           27 MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNANAAL  105 (121)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999877 89999999


Q ss_pred             HHHHHHHhcCCCcHH
Q psy12719         84 KLIEKAISIDKSCMF   98 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~   98 (116)
                      ..++++++.+|++..
T Consensus       106 ~~~~~al~~~P~~~~  120 (121)
T 1hxi_A          106 ASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHC-------
T ss_pred             HHHHHHHHhCcCCCC
Confidence            999999999987653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.86  E-value=2.3e-20  Score=111.64  Aligned_cols=113  Identities=17%  Similarity=0.180  Sum_probs=106.4

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCC--hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD   80 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (116)
                      .+...|++++|+..+++++..+|.  ++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++.. .|+++
T Consensus       186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~  264 (365)
T 4eqf_A          186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN-GDRSE  264 (365)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHH
Confidence            456789999999999999999999  899999999999999999999999999999999999999999999888 89999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         81 EAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +|+..++++++.+|+++.++..+|.++...|++++|
T Consensus       265 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  300 (365)
T 4eqf_A          265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA  300 (365)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            999999999999999999999999999999998764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.86  E-value=1.2e-20  Score=100.94  Aligned_cols=100  Identities=16%  Similarity=0.152  Sum_probs=91.3

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcCh----------hhHHHHHHHHhccCCCCHHHHHHHHHHHHHh
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDF----------DGAEEYFNRSIRVDPENASLYVHRAMLMLQA   75 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   75 (116)
                      +.+.|++|++.++++++.+|+++++|.++|.++...+++          ++|+..|+++++++|+...+|+++|.+|.. 
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~-   92 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS-   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-
Confidence            457899999999999999999999999999999998876          499999999999999999999999999876 


Q ss_pred             c-----------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy12719         76 R-----------GNVDEAIKLIEKAISIDKSCMFAYETLGTI  106 (116)
Q Consensus        76 ~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  106 (116)
                      +           |++++|+++|+++++++|++...+..+..+
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~  134 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  134 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            5           489999999999999999998777766554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.85  E-value=8.6e-20  Score=93.14  Aligned_cols=104  Identities=13%  Similarity=0.138  Sum_probs=98.4

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.+++.+|.++.. .|++++|.
T Consensus        14 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~   92 (118)
T 1elw_A           14 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LNRFEEAK   92 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999887 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEV  108 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~  108 (116)
                      ..+++++..+|+++.++..++.+..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           93 RTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            9999999999999999999888753

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.85  E-value=1.2e-19  Score=93.35  Aligned_cols=107  Identities=22%  Similarity=0.387  Sum_probs=101.3

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|++.+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.. .|++++|.
T Consensus        19 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~   97 (125)
T 1na0_A           19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAI   97 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999887 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRT  111 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~  111 (116)
                      ..+++++..+|+++.++..++.++...|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           98 EYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            9999999999999999999999987764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.85  E-value=2.8e-20  Score=97.69  Aligned_cols=108  Identities=15%  Similarity=0.044  Sum_probs=99.1

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..|.+++..+|.++.++..+|.++...|++++|+..+++++..+|.++.+++.+|.++.. .|++++|+
T Consensus        19 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~   97 (137)
T 3q49_B           19 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYDEAI   97 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-HhhHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999888 89999999


Q ss_pred             HHHHHHHhcCCC-----cHHHHHHHHHHHHhhcc
Q psy12719         84 KLIEKAISIDKS-----CMFAYETLGTIEVQRTF  112 (116)
Q Consensus        84 ~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~  112 (116)
                      ..+.+++..+|+     +..++..+..+......
T Consensus        98 ~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~  131 (137)
T 3q49_B           98 ANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN  131 (137)
T ss_dssp             HHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888     67777777777665543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.85  E-value=3.2e-20  Score=96.88  Aligned_cols=100  Identities=9%  Similarity=0.166  Sum_probs=87.8

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC-------HHHHHHHHHHHHHhc
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-------ASLYVHRAMLMLQAR   76 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~~   76 (116)
                      +.+.|+|++|++.|+++++.+|+++.++.++|.++...|++++|+..+++++.++|.+       ..++.++|.++.. .
T Consensus        18 ~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~   96 (127)
T 4gcn_A           18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQK-Q   96 (127)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-T
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHH-c
Confidence            4578999999999999999999999999999999999999999999999999998765       3578899999777 8


Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy12719         77 GNVDEAIKLIEKAISIDKSCMFAYETLGT  105 (116)
Q Consensus        77 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~  105 (116)
                      |++++|++.+++++...|+ +.....+..
T Consensus        97 ~~~~~A~~~~~kal~~~~~-~~~~~~l~~  124 (127)
T 4gcn_A           97 NDLSLAVQWFHRSLSEFRD-PELVKKVKE  124 (127)
T ss_dssp             TCHHHHHHHHHHHHHHSCC-HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcC-HHHHHHHHH
Confidence            9999999999999998885 444444433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.85  E-value=5.6e-20  Score=95.62  Aligned_cols=112  Identities=20%  Similarity=0.306  Sum_probs=105.7

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..+++++...|.+..++..+|.++...|++++|...+++++...|.++.++..+|.++.. .|++++|.
T Consensus        11 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~   89 (136)
T 2fo7_A           11 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAI   89 (136)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-hcCHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999777 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ..+.+++...|.++.++..++.++...|++++|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  122 (136)
T 2fo7_A           90 EYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA  122 (136)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHccHHHH
Confidence            999999999999999999999999999988764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.85  E-value=6.6e-20  Score=100.01  Aligned_cols=112  Identities=13%  Similarity=0.077  Sum_probs=93.5

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..+++++...|.+..++..+|.++...|++++|...+++++...|.++.++..+|.++.. .|++++|+
T Consensus        52 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~  130 (186)
T 3as5_A           52 YVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN-LGRFDEAI  130 (186)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH-cCcHHHHH
Confidence            44577888888888888888888888888888888888888888888888888888888888888888776 78888888


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ..+++++...|.++.++..+|.++...|++++|
T Consensus       131 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  163 (186)
T 3as5_A          131 DSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA  163 (186)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence            888888888888888888888888888887653

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.84  E-value=2.1e-19  Score=93.47  Aligned_cols=108  Identities=15%  Similarity=0.128  Sum_probs=97.4

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChh---HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcC
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVV---EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARG   77 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~   77 (116)
                      +...|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..|++++..+|++   +.+++.+|.++.. .|
T Consensus        12 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~-~g   90 (129)
T 2xev_A           12 ALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG-EG   90 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-TT
T ss_pred             HHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-cC
Confidence            4568999999999999999999988   799999999999999999999999999999999   8899999999888 99


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcc
Q psy12719         78 NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTF  112 (116)
Q Consensus        78 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  112 (116)
                      ++++|+..+++++...|+++.+......+....++
T Consensus        91 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~  125 (129)
T 2xev_A           91 KNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG  125 (129)
T ss_dssp             CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence            99999999999999999998887777766655444

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.84  E-value=2.2e-20  Score=115.24  Aligned_cols=111  Identities=13%  Similarity=0.073  Sum_probs=101.0

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh---------------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV---------------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR   68 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   68 (116)
                      +...|+|++|+..|.+++..+|.+               ..++.++|.++...|++++|+..|++++.++|+++.+++++
T Consensus       278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~  357 (457)
T 1kt0_A          278 YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRR  357 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH
Confidence            456899999999999999999998               68999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         69 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        69 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      |.++.. +|++++|+..|+++++++|++..++..++.++...+++++
T Consensus       358 g~a~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~  403 (457)
T 1kt0_A          358 GEAQLL-MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE  403 (457)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999888 9999999999999999999999999999999998887654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.84  E-value=4.4e-21  Score=102.71  Aligned_cols=99  Identities=13%  Similarity=0.124  Sum_probs=89.0

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCC-------hhH-----HHHHHHHHHHhhcChhhHHHHHHHHhcc-------CCCCHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSN-------VVE-----ACTLFAQVLVDQEDFDGAEEYFNRSIRV-------DPENASL   64 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~   64 (116)
                      +...|+|++|+..|+++++.+|+       +..     +|.++|.++...|++++|+.+|++++.+       +|++..+
T Consensus        21 l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A  100 (159)
T 2hr2_A           21 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL  100 (159)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHH
Confidence            45689999999999999999999       433     9999999999999999999999999999       9999999


Q ss_pred             H----HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q psy12719         65 Y----VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETL  103 (116)
Q Consensus        65 ~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  103 (116)
                      |    +++|.++.. +|++++|+..|++++++.|++......+
T Consensus       101 ~~~~~~~rG~aL~~-lgr~eEAl~~y~kAlel~p~d~~~~~~~  142 (159)
T 2hr2_A          101 WISAVYSRALALDG-LGRGAEAMPEFKKVVEMIEERKGETPGK  142 (159)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred             HHHHHHhHHHHHHH-CCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            9    999999877 9999999999999999999875443333

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.84  E-value=6.5e-21  Score=122.30  Aligned_cols=111  Identities=16%  Similarity=0.060  Sum_probs=98.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|+++.+++++|.++.. .|++++ +
T Consensus       443 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~-~g~~~~-~  520 (681)
T 2pzi_A          443 LLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL-AGNTDE-H  520 (681)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH-HTCCCT-T
T ss_pred             HHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCChHH-H
Confidence            45678899999999999999999999999999999999999999999999999999999999999999777 899999 9


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.|+++++.+|+++.++.++|.++..+|++++|
T Consensus       521 ~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A  553 (681)
T 2pzi_A          521 KFYQTVWSTNDGVISAAFGLARARSAEGDRVGA  553 (681)
T ss_dssp             CHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999998999999999998888764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.83  E-value=9.1e-20  Score=109.85  Aligned_cols=110  Identities=19%  Similarity=0.308  Sum_probs=70.1

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      ...|++++|++.|+++++.+|+++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++.. .|++++|+.
T Consensus       248 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~  326 (388)
T 1w3b_A          248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-QGNIEEAVR  326 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-cCCHHHHHH
Confidence            3456666666666666666666666666666666666666666666666666666666666666666554 566666666


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      .++++++.+|+++.++..++.++...|++++
T Consensus       327 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  357 (388)
T 1w3b_A          327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQE  357 (388)
T ss_dssp             HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence            6666666666666666666666666666554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=2.5e-19  Score=94.87  Aligned_cols=106  Identities=16%  Similarity=0.161  Sum_probs=99.1

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD   80 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (116)
                      +...|++++|+..|++++..+|++   ..++..+|.++...|++++|+..+++++..+|.++.+++.+|.++.. .|+++
T Consensus        38 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~  116 (148)
T 2dba_A           38 LFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK-LGRLD  116 (148)
T ss_dssp             HHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH-HTCHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH-cCCHH
Confidence            457899999999999999999998   88999999999999999999999999999999999999999999888 89999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHhh
Q psy12719         81 EAIKLIEKAISIDKSCMFAYETLGTIEVQR  110 (116)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  110 (116)
                      +|+..+++++..+|+++.++..++.+....
T Consensus       117 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  146 (148)
T 2dba_A          117 QAVLDLQRCVSLEPKNKVFQEALRNISGPS  146 (148)
T ss_dssp             HHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence            999999999999999999999888876543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.83  E-value=9.1e-20  Score=104.06  Aligned_cols=108  Identities=22%  Similarity=0.206  Sum_probs=94.9

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE   87 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   87 (116)
                      |++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.. .|++++|+..+.
T Consensus       119 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~  197 (258)
T 3uq3_A          119 RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCN  197 (258)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-hCCHHHHHHHHH
Confidence            3444444444444447888889999999999999999999999999999999999999999999888 899999999999


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         88 KAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ++++.+|+++.++..+|.++...|++++|
T Consensus       198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A  226 (258)
T 3uq3_A          198 KAIEKDPNFVRAYIRKATAQIAVKEYASA  226 (258)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999999999999999999998764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.83  E-value=9.7e-20  Score=104.94  Aligned_cols=112  Identities=13%  Similarity=0.096  Sum_probs=96.0

Q ss_pred             ccchhcHHHHHHHHHHHHhhC----CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTH----SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV   79 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   79 (116)
                      ....+++++|+..++++++..    |.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++.. .|++
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~   93 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNF   93 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCH
T ss_pred             cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-ccCH
Confidence            355688999999999988873    45677888899999999999999999999999999988899999998777 8999


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         80 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ++|+..+++++..+|+++.++..+|.++...|++++|
T Consensus        94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  130 (275)
T 1xnf_A           94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA  130 (275)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHH
Confidence            9999999999999998888899999999888887754

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.83  E-value=1.8e-19  Score=108.58  Aligned_cols=110  Identities=21%  Similarity=0.269  Sum_probs=63.5

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      ...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.++.. .|++++|+.
T Consensus       180 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~  258 (388)
T 1w3b_A          180 NAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE-QGLIDLAID  258 (388)
T ss_dssp             HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH-cCCHHHHHH
Confidence            3445555555555555555555555555555555555555555555555555555555555555555554 566666666


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      .+++++..+|+++.++..++.++...|++++
T Consensus       259 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  289 (388)
T 1w3b_A          259 TYRRAIELQPHFPDAYCNLANALKEKGSVAE  289 (388)
T ss_dssp             HHHHHHHTCSSCHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            6666666666555555566666555555543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.83  E-value=1e-19  Score=108.62  Aligned_cols=109  Identities=11%  Similarity=0.104  Sum_probs=54.8

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      ..|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++.. .|++++|+..
T Consensus       229 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~  307 (368)
T 1fch_A          229 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGAHREAVEH  307 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHHHHHHH
Confidence            344455555555555555555555555555555555555555555555555555555555555555444 4555555555


Q ss_pred             HHHHHhcCCCc-----------HHHHHHHHHHHHhhccccc
Q psy12719         86 IEKAISIDKSC-----------MFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        86 ~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~  115 (116)
                      +++++...|++           ..+|..++.++...|++++
T Consensus       308 ~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  348 (368)
T 1fch_A          308 FLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA  348 (368)
T ss_dssp             HHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred             HHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence            55555544444           4445555555555554443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.83  E-value=8.1e-20  Score=113.15  Aligned_cols=108  Identities=14%  Similarity=0.082  Sum_probs=104.1

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhh--------cChhhHHHHHHHHhccCC---CCHHHHHHHHHHHHHhc
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ--------EDFDGAEEYFNRSIRVDP---ENASLYVHRAMLMLQAR   76 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~   76 (116)
                      |++++|+..|+++++.+|+++.+|..+|.++...        |++++|+..|++++..+|   .++.+++++|.++.. .
T Consensus       193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~-~  271 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY-E  271 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH-T
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH-c
Confidence            9999999999999999999999999999999999        999999999999999999   999999999999888 8


Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         77 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        77 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      |++++|++.++++++.+|+++.++..++.++...|++++|
T Consensus       272 g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA  311 (474)
T 4abn_A          272 ESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL  311 (474)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999987753

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.83  E-value=1.6e-19  Score=102.45  Aligned_cols=108  Identities=16%  Similarity=0.244  Sum_probs=54.3

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      ..|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.. .|++++|+..
T Consensus        69 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~  147 (243)
T 2q7f_A           69 SVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK-LEQPKLALPY  147 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-TSCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hccHHHHHHH
Confidence            344455555555555555555555555555555555555555555555555555555555555554444 4555555555


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         86 IEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      +++++...|+++.++..+|.++...|+++
T Consensus       148 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  176 (243)
T 2q7f_A          148 LQRAVELNENDTEARFQFGMCLANEGMLD  176 (243)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence            55555555544444555555554444443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.83  E-value=2.9e-19  Score=101.33  Aligned_cols=112  Identities=15%  Similarity=0.132  Sum_probs=86.0

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.. .|++++|+
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~  179 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN-EGMLDEAL  179 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-cCCHHHHH
Confidence            34567777777778777777777777777777777777788888888877777777777777777777666 67777788


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ..+++++...|+++.++..++.++...|++++|
T Consensus       180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  212 (243)
T 2q7f_A          180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKA  212 (243)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence            777777777777777777777777777777653

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.7e-19  Score=93.67  Aligned_cols=91  Identities=24%  Similarity=0.215  Sum_probs=86.4

Q ss_pred             CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy12719         25 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG  104 (116)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~  104 (116)
                      |..+..+..+|..++..|++++|+..|++++..+|.++.+++++|.++.. .|++++|+..+++++..+|+++.++..+|
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg   79 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRKA   79 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999888 99999999999999999999999999999


Q ss_pred             HHHHhhcccccC
Q psy12719        105 TIEVQRTFVVLW  116 (116)
Q Consensus       105 ~~~~~~~~~~~a  116 (116)
                      .++...|++++|
T Consensus        80 ~~~~~~~~~~~A   91 (126)
T 3upv_A           80 TAQIAVKEYASA   91 (126)
T ss_dssp             HHHHHTTCHHHH
T ss_pred             HHHHHHhCHHHH
Confidence            999999998764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.83  E-value=1.8e-19  Score=113.48  Aligned_cols=111  Identities=11%  Similarity=0.046  Sum_probs=94.1

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|++.++++++.+|++..++..+|.++...|++++|+..++++++.+|++..+++.+|.++.. .|++++|+
T Consensus        33 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~  111 (568)
T 2vsy_A           33 ELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED-AGQAEAAA  111 (568)
T ss_dssp             HHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHH
Confidence            45678888888888888888888888888888888888888888888888888888888888888888777 78888888


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhh---ccccc
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQR---TFVVL  115 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~  115 (116)
                      +.++++++.+|+++.++..++.++...   |++++
T Consensus       112 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~  146 (568)
T 2vsy_A          112 AAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDV  146 (568)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHH
Confidence            888888888888888888888888888   66654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.83  E-value=1.2e-19  Score=98.94  Aligned_cols=112  Identities=16%  Similarity=0.108  Sum_probs=106.5

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++.. .|++++|.
T Consensus        18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~   96 (186)
T 3as5_A           18 HAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ-VQKYDLAV   96 (186)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999888 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ..+++++...|.++.++..+|.++...|++++|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A  129 (186)
T 3as5_A           97 PLLIKVAEANPINFNVRFRLGVALDNLGRFDEA  129 (186)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHH
Confidence            999999999999999999999999999998764

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.83  E-value=5.6e-20  Score=113.87  Aligned_cols=112  Identities=13%  Similarity=0.098  Sum_probs=104.6

Q ss_pred             cccchhcH-HHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhc-----
Q psy12719          3 VPGDRERV-EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR-----   76 (116)
Q Consensus         3 ~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----   76 (116)
                      .+...|++ ++|+..|+++++.+|+++.++..+|.++...|++++|+.+|++++..+|+ ..++..+|.++.. .     
T Consensus       111 ~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~-~~~~~~  188 (474)
T 4abn_A          111 ALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQ-LQTDSG  188 (474)
T ss_dssp             HHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTT-CCCSCH
T ss_pred             HHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHH-hccCCh
Confidence            34667899 99999999999999999999999999999999999999999999999999 7999999999776 8     


Q ss_pred             ----CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhh--------cccccC
Q psy12719         77 ----GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR--------TFVVLW  116 (116)
Q Consensus        77 ----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a  116 (116)
                          |++++|+..++++++.+|+++.+|..+|.++...        |++++|
T Consensus       189 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A  240 (474)
T 4abn_A          189 DEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA  240 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence                9999999999999999999999999999999988        887754

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.83  E-value=1.2e-19  Score=109.41  Aligned_cols=111  Identities=14%  Similarity=0.117  Sum_probs=103.8

Q ss_pred             ccchhcHHHHHHHHHHHHh----------------hCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVD----------------THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH   67 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   67 (116)
                      +...|++++|+..|+++++                .+|....++.++|.++...|++++|+.++++++..+|+++.+++.
T Consensus       233 ~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  312 (370)
T 1ihg_A          233 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYR  312 (370)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            4567899999999999998                677788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        68 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      +|.++.. +|++++|+..++++++++|++..++..++.++...++.++
T Consensus       313 lg~~~~~-~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~  359 (370)
T 1ihg_A          313 RAQGWQG-LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD  359 (370)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999888 9999999999999999999999999999999988877654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.82  E-value=4e-19  Score=106.07  Aligned_cols=110  Identities=12%  Similarity=0.109  Sum_probs=105.6

Q ss_pred             chhcHHHHHHHHHHHHhhCCC--hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSN--VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      ..|++++|+..+++++..+|.  ++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.. .|++++|+
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~~~A~  271 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-GNQSEEAV  271 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-cCCHHHHH
Confidence            578999999999999999999  789999999999999999999999999999999999999999999888 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ..+++++..+|+++.++..+|.++...|++++|
T Consensus       272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A  304 (368)
T 1fch_A          272 AAYRRALELQPGYIRSRYNLGISCINLGAHREA  304 (368)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence            999999999999999999999999999998764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.82  E-value=6.1e-19  Score=103.61  Aligned_cols=113  Identities=11%  Similarity=0.152  Sum_probs=108.3

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      ++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.. .|++++|
T Consensus       147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A  225 (327)
T 3cv0_A          147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GNRPQEA  225 (327)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHH
Confidence            477889999999999999999999999999999999999999999999999999999999999999999888 8999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +..++++++..|+++.++..+|.++...|++++|
T Consensus       226 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A  259 (327)
T 3cv0_A          226 LDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA  259 (327)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence            9999999999999999999999999999998764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.82  E-value=1.8e-19  Score=100.80  Aligned_cols=109  Identities=20%  Similarity=0.196  Sum_probs=100.0

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..|++++  .| ++.++..+|.++...|++++|+..|++++..+|.++.+++.+|.++.. .|++++|+
T Consensus        16 ~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~~A~   91 (213)
T 1hh8_A           16 AADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYDLAI   91 (213)
T ss_dssp             HHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cccHHHHH
Confidence            456799999999999996  33 678999999999999999999999999999999999999999999888 89999999


Q ss_pred             HHHHHHHhcCCCcH----------------HHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCM----------------FAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a  116 (116)
                      ..+++++...|++.                .++..+|.++...|++++|
T Consensus        92 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  140 (213)
T 1hh8_A           92 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA  140 (213)
T ss_dssp             HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence            99999999877655                8999999999999998764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.82  E-value=1.5e-19  Score=104.19  Aligned_cols=111  Identities=12%  Similarity=0.122  Sum_probs=98.6

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC----HHHHHHHHHHHHHhcCCH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----ASLYVHRAMLMLQARGNV   79 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~   79 (116)
                      +...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++. .|.+    ..++..+|.++.. .|++
T Consensus        13 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~-~~~~   90 (272)
T 3u4t_A           13 LFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMK-KGQD   90 (272)
T ss_dssp             HHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHH-cccH
Confidence            45778999999999999999999999999999999999999999999999998 3333    4458999999887 8999


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         80 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ++|+..++++++.+|.++.++..+|.++...|++++|
T Consensus        91 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A  127 (272)
T 3u4t_A           91 SLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLA  127 (272)
T ss_dssp             HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHH
Confidence            9999999999999999999999999999999988764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.82  E-value=5.5e-19  Score=99.02  Aligned_cols=107  Identities=10%  Similarity=0.188  Sum_probs=52.3

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhh-cChhhHHHHHHHHhc--cCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ-EDFDGAEEYFNRSIR--VDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      .|++++|++.+++++..+|.+..++..+|.++... |++++|+..+++++.  ..|....++..+|.++.. .|++++|+
T Consensus        55 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~  133 (225)
T 2vq2_A           55 LKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK-QGQFGLAE  133 (225)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH-cCCHHHHH
Confidence            44445555555555544444444444555555444 555555555555444  333334444445554444 45555555


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      ..+.++++..|.++.++..++.++...|+++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A          134 AYLKRSLAAQPQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence            5555555555544444555555555544444

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.82  E-value=1.8e-19  Score=113.45  Aligned_cols=109  Identities=14%  Similarity=0.048  Sum_probs=87.3

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI   86 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   86 (116)
                      .|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++.. .|++++|++.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWT-QQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999888 89999999999


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         87 EKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +++++.+|+++.++..+|.++...|++++|
T Consensus        81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A  110 (568)
T 2vsy_A           81 QQASDAAPEHPGIALWLGHALEDAGQAEAA  110 (568)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999998764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.82  E-value=5.7e-19  Score=98.97  Aligned_cols=112  Identities=14%  Similarity=0.141  Sum_probs=96.5

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhc-CCHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR-GNVDEA   82 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~a   82 (116)
                      +...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++.. . |++++|
T Consensus        18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~~A   96 (225)
T 2vq2_A           18 YMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG-RLNRPAES   96 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCCHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCcHHHH
Confidence            45678889999999999999888888888899999999999999999999999888888888889988776 8 899999


Q ss_pred             HHHHHHHHh--cCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         83 IKLIEKAIS--IDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        83 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +..+++++.  ..|....++..+|.++...|++++|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  132 (225)
T 2vq2_A           97 MAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA  132 (225)
T ss_dssp             HHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHH
Confidence            999999988  6677788888899998888887754

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.82  E-value=5.7e-19  Score=100.83  Aligned_cols=110  Identities=13%  Similarity=0.181  Sum_probs=65.2

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhc--cCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR--VDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      ...|++++|++.+++++..+|.+..++..+|.++...|++++|+..+++++.  ..|.+..++..+|.++.. .|++++|
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A  160 (252)
T 2ho1_A           82 QTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ-MKKPAQA  160 (252)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH-cCCHHHH
Confidence            3445566666666666666665555666666666666666666666666655  555555556666665555 5666666


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      +..+.+++...|.++.++..++.++...|++++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          161 KEYFEKSLRLNRNQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence            666666666666555556666666665555543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.81  E-value=4.4e-19  Score=113.90  Aligned_cols=110  Identities=17%  Similarity=0.029  Sum_probs=104.6

Q ss_pred             cchhcHHHHHHHHHHHH--------hhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhc
Q psy12719          5 GDRERVEQSLKEFRNFV--------DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR   76 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   76 (116)
                      ...|++++|++.+++++        ..+|++..++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++.. .
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL-T  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-H
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-c
Confidence            45789999999999999        89999999999999999999999999999999999999999999999999888 8


Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         77 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        77 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      |++++|+..|+++++.+|+++.++.++|.++..+|++++
T Consensus       481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~  519 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE  519 (681)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH
Confidence            999999999999999999999999999999999999864

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.81  E-value=5.1e-19  Score=103.93  Aligned_cols=112  Identities=13%  Similarity=0.117  Sum_probs=106.6

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++...|.++.++..+|.++.. .|++++|.
T Consensus       182 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~g~~~~A~  260 (327)
T 3cv0_A          182 YNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN-MSQYDLAA  260 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hccHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999888 89999999


Q ss_pred             HHHHHHHhcCCC------------cHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKS------------CMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.+++++...|+            .+.++..++.++...|++++|
T Consensus       261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  305 (327)
T 3cv0_A          261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV  305 (327)
T ss_dssp             HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence            999999999999            899999999999999998764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.81  E-value=1.2e-18  Score=100.39  Aligned_cols=107  Identities=9%  Similarity=0.154  Sum_probs=95.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHH-HHHHHhcCCHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRA-MLMLQARGNVDEA   82 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~a   82 (116)
                      +...|++++|++.++++++.+|.++.++..+|.++...|++++|+..+++++..+|.++.+++.+| .+ +. .+++++|
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~-~~-~~~~~~A  161 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY-YY-NKEYVKA  161 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHH-HH-TTCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHH-HH-HHHHHHH
Confidence            456788999999999999999999999999999999999999999999999999999999999999 55 55 5799999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHhhcc
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTIEVQRTF  112 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  112 (116)
                      ++.++++++.+|+++.++..+|.++...|+
T Consensus       162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          162 DSSFVKVLELKPNIYIGYLWRARANAAQDP  191 (272)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence            999999999999999999999999988887

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.81  E-value=8.4e-19  Score=90.89  Aligned_cols=109  Identities=16%  Similarity=0.187  Sum_probs=99.6

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC-------HHHHHHHHHHHHHhc
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-------ASLYVHRAMLMLQAR   76 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~~   76 (116)
                      +...|++++|+..+++++..+|.++.++..+|.++...|++++|+.++++++...|.+       +.+++.+|.++.. .
T Consensus        14 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~   92 (131)
T 1elr_A           14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK-E   92 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-T
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH-h
Confidence            4567999999999999999999999999999999999999999999999999998877       8899999999888 8


Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         77 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        77 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      |++++|.+.+++++...| ++..+..++.+....++.+
T Consensus        93 ~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~  129 (131)
T 1elr_A           93 EKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQE  129 (131)
T ss_dssp             TCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-
T ss_pred             ccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence            999999999999999998 5788889998887776544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.81  E-value=7.1e-19  Score=103.44  Aligned_cols=106  Identities=11%  Similarity=0.064  Sum_probs=66.2

Q ss_pred             cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12719          9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK   88 (116)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   88 (116)
                      ++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++.. .|++++|+..+++
T Consensus       106 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~  184 (330)
T 3hym_B          106 KNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL-TNNSKLAERFFSQ  184 (330)
T ss_dssp             CHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HhhHHHHHHHHHH
Confidence            556666666666666666666666666666666666666666666666666666666666666555 5666666666666


Q ss_pred             HHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         89 AISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      ++..+|+++.++..+|.++...|++++
T Consensus       185 al~~~~~~~~~~~~l~~~~~~~~~~~~  211 (330)
T 3hym_B          185 ALSIAPEDPFVMHEVGVVAFQNGEWKT  211 (330)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHcccHHH
Confidence            666666666666666666666666554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.81  E-value=5.1e-19  Score=101.04  Aligned_cols=112  Identities=17%  Similarity=0.186  Sum_probs=105.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|.++.. .|++++|+
T Consensus        47 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~  125 (252)
T 2ho1_A           47 YLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE-QKRYEEAY  125 (252)
T ss_dssp             HHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-HhHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999888 89999999


Q ss_pred             HHHHHHHh--cCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAIS--IDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.+++++.  ..|.++.++..+|.++...|++++|
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  160 (252)
T 2ho1_A          126 QRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA  160 (252)
T ss_dssp             HHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence            99999999  8889999999999999999998764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.80  E-value=3.3e-19  Score=102.68  Aligned_cols=113  Identities=12%  Similarity=0.100  Sum_probs=101.2

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHh--
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQA--   75 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~--   75 (116)
                      +...|++++|+..|++++..+|++   +.+++.+|.++...|++++|+..|++++...|++   +.+++.+|.+++..  
T Consensus        25 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~  104 (261)
T 3qky_A           25 FYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSP  104 (261)
T ss_dssp             HHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCC
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcc
Confidence            456899999999999999999998   8899999999999999999999999999998855   67899999996541  


Q ss_pred             -----cCCHHHHHHHHHHHHhcCCCcHHHH-----------------HHHHHHHHhhcccccC
Q psy12719         76 -----RGNVDEAIKLIEKAISIDKSCMFAY-----------------ETLGTIEVQRTFVVLW  116 (116)
Q Consensus        76 -----~~~~~~a~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a  116 (116)
                           .|++++|+..+++++...|+++.+.                 ..+|.++...|++++|
T Consensus       105 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  167 (261)
T 3qky_A          105 PYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA  167 (261)
T ss_dssp             CTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence                 6999999999999999999886655                 7889999999998764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.80  E-value=1.6e-19  Score=94.18  Aligned_cols=90  Identities=20%  Similarity=0.339  Sum_probs=81.3

Q ss_pred             ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-------HH
Q psy12719         26 NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-------MF   98 (116)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~   98 (116)
                      +.+.++..+|..++..|++++|+.+|++++.++|+++.++.++|.+++. +|++++|++.+.++++++|++       ..
T Consensus         6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~   84 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EKKFAECVQFCEKAVEVGRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence            3466788999999999999999999999999999999999999999888 999999999999999998765       35


Q ss_pred             HHHHHHHHHHhhcccccC
Q psy12719         99 AYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        99 ~~~~l~~~~~~~~~~~~a  116 (116)
                      ++..+|.++..+|++++|
T Consensus        85 ~~~~lg~~~~~~~~~~~A  102 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLA  102 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHcCCHHHH
Confidence            788899999999988764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.80  E-value=1.3e-18  Score=101.94  Aligned_cols=112  Identities=13%  Similarity=0.080  Sum_probs=95.2

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHH--HHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFA--QVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD   80 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (116)
                      ++..+|++++|+..++++++.+|++.......+  .++...|++++|+..|++++...|.++.+++.+|.++.. .|+++
T Consensus       139 ~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~  217 (291)
T 3mkr_A          139 ILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA-QGRWE  217 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TTCHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHH
Confidence            345678999999999999999988765444333  334456899999999999999999999999999999887 89999


Q ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         81 EAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        81 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      +|+..+++++..+|+++.++.+++.++...|+.++
T Consensus       218 eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~e  252 (291)
T 3mkr_A          218 AAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPE  252 (291)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHH
Confidence            99999999999999999999999999999888753

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.80  E-value=3.7e-19  Score=101.52  Aligned_cols=113  Identities=12%  Similarity=0.144  Sum_probs=104.2

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCCh-------hHHHHHHHHHHHhhcChhhHHHHHHHHhc-------------------
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNV-------VEACTLFAQVLVDQEDFDGAEEYFNRSIR-------------------   56 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-------------------   56 (116)
                      ++...|++++|+..+.+++...|.+       +.++..+|.++...|++++|+..+++++.                   
T Consensus        47 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~  126 (258)
T 3uq3_A           47 AEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELK  126 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHH
Confidence            3556899999999999999998876       68999999999999999999999999999                   


Q ss_pred             -------cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         57 -------VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        57 -------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                             .+|..+.++..+|.++.. .|++++|+..+++++..+|.++.++..+|.++...|++++|
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A  192 (258)
T 3uq3_A          127 KAEAEAYVNPEKAEEARLEGKEYFT-KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA  192 (258)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCcchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHH
Confidence                   677778899999999888 89999999999999999999999999999999999998764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.80  E-value=1.1e-18  Score=101.99  Aligned_cols=111  Identities=18%  Similarity=0.143  Sum_probs=95.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHH-----------------------------
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS-----------------------------   54 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a-----------------------------   54 (116)
                      +...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++                             
T Consensus       127 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~  206 (287)
T 3qou_A          127 LMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQ  206 (287)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHH
Confidence            346799999999999999999999999999999999999988887666554                             


Q ss_pred             -----hccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHhhccccc
Q psy12719         55 -----IRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC--MFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        55 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~  115 (116)
                           +..+|+++.+++.+|.++.. .|++++|+..+.+++..+|++  ..++..++.++...|+.++
T Consensus       207 ~l~~al~~~P~~~~~~~~la~~l~~-~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  273 (287)
T 3qou_A          207 QLQQQVAENPEDAALATQLALQLHQ-VGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA  273 (287)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHH-cccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence                 55578888888999998777 899999999999999999887  7888999999988888765

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.80  E-value=1.2e-18  Score=102.45  Aligned_cols=110  Identities=10%  Similarity=0.068  Sum_probs=71.2

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc-ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE-DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      ...|++++|+..+++++..+|.++.++..+|.++...| ++++|+..+++++..+|.++.++..+|.++.. .|++++|+
T Consensus        67 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~  145 (330)
T 3hym_B           67 VELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV-ESEHDQAM  145 (330)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHH-HTCHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-ccCHHHHH
Confidence            34556666666666666666666666666666666666 66666666666666666666666666666555 56666666


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      ..+++++...|++..++..+|.++...|++++
T Consensus       146 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~  177 (330)
T 3hym_B          146 AAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL  177 (330)
T ss_dssp             HHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence            66666666666666666666666666666554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.80  E-value=4.3e-19  Score=106.12  Aligned_cols=112  Identities=12%  Similarity=0.121  Sum_probs=103.8

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      ++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++..+|+++.++..+|.++.. .|++++|
T Consensus       222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A  300 (365)
T 4eqf_A          222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN-LGAYREA  300 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-CCCHHHH
Confidence            345679999999999999999999999999999999999999999999999999999999999999999888 8999999


Q ss_pred             HHHHHHHHhcCCC------------cHHHHHHHHHHHHhhccccc
Q psy12719         83 IKLIEKAISIDKS------------CMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        83 ~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~  115 (116)
                      +..++++++..|+            ...+|..++.++..+|+.+.
T Consensus       301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  345 (365)
T 4eqf_A          301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPEL  345 (365)
T ss_dssp             HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHH
Confidence            9999999999876            36789999999999988764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.80  E-value=2e-18  Score=99.44  Aligned_cols=110  Identities=15%  Similarity=0.093  Sum_probs=98.4

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++.. .|++++|+
T Consensus        53 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~  131 (275)
T 1xnf_A           53 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRDKLAQ  131 (275)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH-hccHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999888 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      ..+++++..+|+++.....++.. ...|++++
T Consensus       132 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~  162 (275)
T 1xnf_A          132 DDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQ  162 (275)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHH
T ss_pred             HHHHHHHHhCCCChHHHHHHHHH-HHhcCHHH
Confidence            99999999999988655555443 44466544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.80  E-value=1.5e-18  Score=93.85  Aligned_cols=92  Identities=14%  Similarity=0.158  Sum_probs=87.4

Q ss_pred             CCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q psy12719         24 HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETL  103 (116)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  103 (116)
                      .+.++..+..+|.++...|++++|+..|++++..+|.++.+++.+|.+++. .|++++|+..+++++..+|+++.++..+
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l   85 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHEKAAEDAELATVVDPKYSKAWSRL   85 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            456688999999999999999999999999999999999999999999888 9999999999999999999999999999


Q ss_pred             HHHHHhhcccccC
Q psy12719        104 GTIEVQRTFVVLW  116 (116)
Q Consensus       104 ~~~~~~~~~~~~a  116 (116)
                      |.++..+|++++|
T Consensus        86 g~~~~~~g~~~~A   98 (164)
T 3sz7_A           86 GLARFDMADYKGA   98 (164)
T ss_dssp             HHHHHHTTCHHHH
T ss_pred             HHHHHHccCHHHH
Confidence            9999999998764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.80  E-value=1e-19  Score=99.53  Aligned_cols=111  Identities=17%  Similarity=0.124  Sum_probs=84.3

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHh----------------------------
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSI----------------------------   55 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~----------------------------   55 (116)
                      +...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++                            
T Consensus        16 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~   95 (176)
T 2r5s_A           16 LLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELK   95 (176)
T ss_dssp             HHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHH
Confidence            3456788888888888888888888888888888888888777766555543                            


Q ss_pred             ------ccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHhhccccc
Q psy12719         56 ------RVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC--MFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        56 ------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~  115 (116)
                            ..+|+++.+++.+|.++.. .|++++|+..+++++..+|+.  +.++..++.++...|+.++
T Consensus        96 ~~~~al~~~P~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  162 (176)
T 2r5s_A           96 RLEQELAANPDNFELACELAVQYNQ-VGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA  162 (176)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence                  4456667777778887666 788888888888888888765  5578888888888887765

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.80  E-value=1.9e-18  Score=102.48  Aligned_cols=112  Identities=17%  Similarity=0.117  Sum_probs=104.0

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.. .|++++|+
T Consensus        13 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~   91 (359)
T 3ieg_A           13 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK-QGKLDEAE   91 (359)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH-cCChHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999888 89999999


Q ss_pred             HHHHHHHhcCC---CcHHHHHHH------------HHHHHhhcccccC
Q psy12719         84 KLIEKAISIDK---SCMFAYETL------------GTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a  116 (116)
                      ..+++++..+|   +++.++..+            +.++...|++++|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A  139 (359)
T 3ieg_A           92 DDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAA  139 (359)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence            99999999999   888888877            6788888877653

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.79  E-value=3.1e-18  Score=95.94  Aligned_cols=105  Identities=13%  Similarity=0.140  Sum_probs=87.9

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh-------
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA-------   75 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------   75 (116)
                      ++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.++|+++.+++.+|.+++..       
T Consensus        63 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~  142 (208)
T 3urz_A           63 AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKK  142 (208)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence            3567899999999999999999999999999999999999999999999999999999999999888876431       


Q ss_pred             ---------------------------cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719         76 ---------------------------RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV  108 (116)
Q Consensus        76 ---------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  108 (116)
                                                 .|++++|+..++++++.+|+.. +...+..+..
T Consensus       143 ~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i~~  201 (208)
T 3urz_A          143 LETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKILR  201 (208)
T ss_dssp             HHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHHHHH
T ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHHHHH
Confidence                                       2457788888888888888753 4445555443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.79  E-value=1.2e-18  Score=100.35  Aligned_cols=107  Identities=16%  Similarity=-0.010  Sum_probs=97.0

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHh--------hcChhhHHHHHHHHhccCCCCHHHH------
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVD--------QEDFDGAEEYFNRSIRVDPENASLY------   65 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~------   65 (116)
                      ++...|++++|+..|++++...|++   +.+++.+|.++..        .|++++|+..|++++...|++..+.      
T Consensus        61 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~  140 (261)
T 3qky_A           61 AYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKI  140 (261)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHH
Confidence            4567899999999999999998854   6789999999999        9999999999999999999986655      


Q ss_pred             -----------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHhh
Q psy12719         66 -----------VHRAMLMLQARGNVDEAIKLIEKAISIDKS---CMFAYETLGTIEVQR  110 (116)
Q Consensus        66 -----------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~  110 (116)
                                 +.+|.++.. .|++++|+..+++++...|+   .+.++..+|.++..+
T Consensus       141 ~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  198 (261)
T 3qky_A          141 RELRAKLARKQYEAARLYER-RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY  198 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence                       888999888 89999999999999999998   577999999999977

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.79  E-value=3.2e-18  Score=89.78  Aligned_cols=94  Identities=18%  Similarity=0.183  Sum_probs=87.3

Q ss_pred             hhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q psy12719         22 DTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYE  101 (116)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  101 (116)
                      ..+|.++..+..+|..+...|++++|+..|++++..+|.++.+++.+|.++.. .|++++|+..+++++..+|+++.++.
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~   81 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHF   81 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCchhHHHHH
Confidence            34577889999999999999999999999999999999999999999999888 99999999999999999999999999


Q ss_pred             HHHHHHHhhcccccC
Q psy12719        102 TLGTIEVQRTFVVLW  116 (116)
Q Consensus       102 ~l~~~~~~~~~~~~a  116 (116)
                      .+|.++...|++++|
T Consensus        82 ~l~~~~~~~~~~~~A   96 (137)
T 3q49_B           82 FLGQCQLEMESYDEA   96 (137)
T ss_dssp             HHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhhHHHH
Confidence            999999999998764

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.79  E-value=2.3e-18  Score=107.03  Aligned_cols=113  Identities=19%  Similarity=0.196  Sum_probs=96.9

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      .+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.. .|++++|
T Consensus       285 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A  363 (537)
T 3fp2_A          285 TLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK-QGKFTES  363 (537)
T ss_dssp             HTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHH
Confidence            356678888888888888888888888888888888888888888888888888888888888888888777 8888888


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +..+++++..+|+++.++..+|.++...|++++|
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  397 (537)
T 3fp2_A          364 EAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA  397 (537)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence            8888888888888888888888888888887654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.79  E-value=1.9e-18  Score=97.78  Aligned_cols=109  Identities=10%  Similarity=0.028  Sum_probs=54.7

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhH---HHHHHHHHHHh------------------hcChhhHHHHHHHHhccCCCCHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVE---ACTLFAQVLVD------------------QEDFDGAEEYFNRSIRVDPENASL   64 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~------------------~~~~~~A~~~~~~a~~~~~~~~~~   64 (116)
                      ..|++++|+..|+++++.+|+++.   +++.+|.++..                  .|++++|+..|+++++..|+++.+
T Consensus        53 ~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a  132 (225)
T 2yhc_A           53 KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYT  132 (225)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTH
T ss_pred             hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            344555555555555555544432   34444444433                  344555555555555555544322


Q ss_pred             H-----------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHhhccccc
Q psy12719         65 Y-----------------VHRAMLMLQARGNVDEAIKLIEKAISIDKSCM---FAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        65 ~-----------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~  115 (116)
                      +                 +.+|.+++. .|++++|+..++++++..|+++   .++..+|.++..+|++++
T Consensus       133 ~~a~~~l~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~  202 (225)
T 2yhc_A          133 TDATKRLVFLKDRLAKYEYSVAEYYTE-RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQ  202 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHH
Confidence            2                 334444444 4556666666666665555543   445566666666655544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.79  E-value=2.6e-18  Score=88.92  Aligned_cols=87  Identities=11%  Similarity=0.046  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719         29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV  108 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  108 (116)
                      ..++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++.. .|++++|+..++++++.+|+++.++..+|.++.
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3578899999999999999999999999999999999999999887 899999999999999999999999999999999


Q ss_pred             hhcccccC
Q psy12719        109 QRTFVVLW  116 (116)
Q Consensus       109 ~~~~~~~a  116 (116)
                      ..|++++|
T Consensus        97 ~~g~~~~A  104 (121)
T 1hxi_A           97 NEHNANAA  104 (121)
T ss_dssp             HHHHHHHH
T ss_pred             HcCCHHHH
Confidence            99998764

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.4e-17  Score=84.36  Aligned_cols=89  Identities=17%  Similarity=0.188  Sum_probs=83.5

Q ss_pred             hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HHHH
Q psy12719         27 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC------MFAY  100 (116)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~  100 (116)
                      ++.++..+|.++...|++++|+..|++++..+|.++.+++++|.++.. .|++++|+..+++++..+|++      ..++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~   81 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ   81 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999888 999999999999999999998      8899


Q ss_pred             HHHHHHHHhhcccccC
Q psy12719        101 ETLGTIEVQRTFVVLW  116 (116)
Q Consensus       101 ~~l~~~~~~~~~~~~a  116 (116)
                      ..++.++...|+++.|
T Consensus        82 ~~~~~~~~~~~~~~~a   97 (111)
T 2l6j_A           82 YRLELAQGAVGSVQIP   97 (111)
T ss_dssp             HHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHhHhhh
Confidence            9999999999987764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.78  E-value=8.8e-20  Score=108.79  Aligned_cols=110  Identities=12%  Similarity=0.058  Sum_probs=102.9

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---------------HHHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---------------ASLYVHRAM   70 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~~~   70 (116)
                      ..+++++|++.+++++...|..+.++..+|.+++..|++++|+..|++++..+|.+               ..++.++|.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            45667788888889999999999999999999999999999999999999999998               689999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         71 LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ++.. .|++++|+..+.+++..+|+++.+++.+|.++..+|++++|
T Consensus       205 ~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A  249 (336)
T 1p5q_A          205 CHLK-LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELA  249 (336)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence            9888 99999999999999999999999999999999999998864

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.78  E-value=1.1e-18  Score=104.24  Aligned_cols=106  Identities=15%  Similarity=0.137  Sum_probs=83.3

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChh-----------------HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVV-----------------EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY   65 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   65 (116)
                      .+...|++++|+..|.+++...|.+.                 .++.++|.++...|++++|+..|++++..+|++..++
T Consensus       188 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  267 (338)
T 2if4_A          188 SLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKAL  267 (338)
T ss_dssp             HTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            35678999999999999999999877                 4899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719         66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ  109 (116)
Q Consensus        66 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (116)
                      +++|.++.. +|++++|+..|++++.++|+++.++..++.+...
T Consensus       268 ~~lg~a~~~-~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          268 FRRGKAKAE-LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHT-TTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            999999887 9999999999999999999999999999888543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.78  E-value=3.9e-18  Score=86.26  Aligned_cols=92  Identities=16%  Similarity=0.151  Sum_probs=77.7

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC--CHHHHHHHHHHHHHhc-CCHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE--NASLYVHRAMLMLQAR-GNVD   80 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~-~~~~   80 (116)
                      +...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.  +..++..+|.++.. . |+++
T Consensus        16 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~-~~~~~~   94 (112)
T 2kck_A           16 QYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY-IEGKEV   94 (112)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT-CSSCSH
T ss_pred             HHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH-HhCCHH
Confidence            456788888888888888888888888888888888888888888888888888888  88888888888766 8 8888


Q ss_pred             HHHHHHHHHHhcCCCc
Q psy12719         81 EAIKLIEKAISIDKSC   96 (116)
Q Consensus        81 ~a~~~~~~~~~~~~~~   96 (116)
                      +|++.+.+++...|.+
T Consensus        95 ~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           95 EAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHhhcccCC
Confidence            8888888888888765

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.78  E-value=5.7e-18  Score=100.41  Aligned_cols=108  Identities=14%  Similarity=0.163  Sum_probs=55.1

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCC---CCHHHHHHH------------HH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP---ENASLYVHR------------AM   70 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~------------~~   70 (116)
                      ..|++++|+..+++++..+|++..++..+|.++...|++++|+..+++++..+|   .++.++..+            |.
T Consensus        49 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  128 (359)
T 3ieg_A           49 AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQAL  128 (359)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555555555555555555555555555555555   444444433            33


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         71 LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      ++.. .|++++|++.+.+++...|.++.++..+|.++...|+++
T Consensus       129 ~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (359)
T 3ieg_A          129 DAFD-GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPR  171 (359)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHH-ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHH
Confidence            3333 444444444444444444444444444444444444443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.78  E-value=2.6e-18  Score=97.23  Aligned_cols=113  Identities=11%  Similarity=0.068  Sum_probs=97.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChh---HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHH---HHHHHHHHHHHh--
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVV---EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS---LYVHRAMLMLQA--   75 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~~~--   75 (116)
                      +...|++++|+..|++++...|.++   .+++.+|.++...|++++|+..|+++++.+|+++.   +++.+|.+++..  
T Consensus        14 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~   93 (225)
T 2yhc_A           14 KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDD   93 (225)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhh
Confidence            4678999999999999999998764   68999999999999999999999999999998864   789999987651  


Q ss_pred             ---------------cCCHHHHHHHHHHHHhcCCCcHHHH-----------------HHHHHHHHhhcccccC
Q psy12719         76 ---------------RGNVDEAIKLIEKAISIDKSCMFAY-----------------ETLGTIEVQRTFVVLW  116 (116)
Q Consensus        76 ---------------~~~~~~a~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~~~~~~a  116 (116)
                                     .|++++|+..++++++..|+++.++                 ..+|.++...|++++|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A  166 (225)
T 2yhc_A           94 SALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAV  166 (225)
T ss_dssp             --------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             hhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence                           4789999999999999999986554                 4677888888887654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.77  E-value=6.4e-18  Score=106.34  Aligned_cols=112  Identities=13%  Similarity=0.110  Sum_probs=88.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|++.|+++++.+|.+..+|..+|.++...|++++|+..|++++...|.+..++..++.++.. .|++++|+
T Consensus       383 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~  461 (597)
T 2xpi_A          383 YLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ-LGNILLAN  461 (597)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH-HTCHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cCCHHHHH
Confidence            44567788888888888888888777888888888888888888888888888888888888888888766 78888888


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.++++++..|.++.++..++.++...|++++|
T Consensus       462 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  494 (597)
T 2xpi_A          462 EYLQSSYALFQYDPLLLNELGVVAFNKSDMQTA  494 (597)
T ss_dssp             HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence            888888888888888888888888888777654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.77  E-value=1.2e-17  Score=102.04  Aligned_cols=112  Identities=18%  Similarity=0.124  Sum_probs=101.7

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|.++.++..+|.++.. .|++++|+
T Consensus        36 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~  114 (450)
T 2y4t_A           36 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK-QGKLDEAE  114 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCCHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999888 89999999


Q ss_pred             HHHHHHHhcCCCcH---HHHHHH------------HHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCM---FAYETL------------GTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a  116 (116)
                      ..+++++..+|+++   .++..+            |.++...|++++|
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A  162 (450)
T 2y4t_A          115 DDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA  162 (450)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999988   777666            5557777776653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.77  E-value=2.9e-18  Score=86.73  Aligned_cols=92  Identities=13%  Similarity=0.144  Sum_probs=87.5

Q ss_pred             CCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--cHHHHH
Q psy12719         24 HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS--CMFAYE  101 (116)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~  101 (116)
                      +|++..++..+|.++...|++++|+..+++++..+|.+..+++.+|.++.. .|++++|+..++++++..|.  ++.++.
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN-LERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            688888999999999999999999999999999999999999999999888 89999999999999999999  999999


Q ss_pred             HHHHHHHhh-cccccC
Q psy12719        102 TLGTIEVQR-TFVVLW  116 (116)
Q Consensus       102 ~l~~~~~~~-~~~~~a  116 (116)
                      .++.++... |++++|
T Consensus        81 ~l~~~~~~~~~~~~~A   96 (112)
T 2kck_A           81 AKADALRYIEGKEVEA   96 (112)
T ss_dssp             HHHHHHTTCSSCSHHH
T ss_pred             HHHHHHHHHhCCHHHH
Confidence            999999999 998764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.77  E-value=2.3e-17  Score=84.42  Aligned_cols=100  Identities=11%  Similarity=0.123  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12719         12 QSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAIS   91 (116)
Q Consensus        12 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   91 (116)
                      +|+..|+++++.+|+++.++..+|.++...|++++|+..|++++..+|.++.+++.+|.++.. .|++++|+..+++++.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG-QGDRAGARQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence            578899999999999999999999999999999999999999999999999999999999888 8999999999999999


Q ss_pred             cCCCc--HHHHHHHHHHHHhhcc
Q psy12719         92 IDKSC--MFAYETLGTIEVQRTF  112 (116)
Q Consensus        92 ~~~~~--~~~~~~l~~~~~~~~~  112 (116)
                      ..|..  ......+...+...++
T Consensus        82 ~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           82 AAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hccccccHHHHHHHHHHHHHhcc
Confidence            98754  4455556555555443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.76  E-value=1.8e-17  Score=90.45  Aligned_cols=103  Identities=14%  Similarity=0.177  Sum_probs=92.9

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHH-HHhhcCh--hhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQV-LVDQEDF--DGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV   79 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   79 (116)
                      ++...|++++|+..|++++..+|+++.++..+|.+ +...|++  ++|+..+++++..+|.++.+++.+|.++.. .|++
T Consensus        53 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~  131 (177)
T 2e2e_A           53 YYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM-QANY  131 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cccH
Confidence            34568999999999999999999999999999999 8899998  999999999999999999999999999888 8999


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy12719         80 DEAIKLIEKAISIDKSCMFAYETLGTI  106 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~  106 (116)
                      ++|+..+.+++..+|+++.....+..+
T Consensus       132 ~~A~~~~~~al~~~p~~~~~~~~~~~i  158 (177)
T 2e2e_A          132 AQAIELWQKVMDLNSPRINRTQLVESI  158 (177)
T ss_dssp             HHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence            999999999999999886554444433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.76  E-value=1e-17  Score=89.77  Aligned_cols=88  Identities=13%  Similarity=-0.015  Sum_probs=82.2

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC-------CHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE-------NAS-----LYVHRAMLMLQARGNVDEAIKLIEKAISI---   92 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~-----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---   92 (116)
                      ...+...|..++..|++++|+..|++++.++|+       +..     +|.++|.++.. +|++++|+..+.+++++   
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~-Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhhc
Confidence            567889999999999999999999999999999       444     99999999887 99999999999999999   


Q ss_pred             ----CCCcHHHH----HHHHHHHHhhcccccC
Q psy12719         93 ----DKSCMFAY----ETLGTIEVQRTFVVLW  116 (116)
Q Consensus        93 ----~~~~~~~~----~~l~~~~~~~~~~~~a  116 (116)
                          +|++..+|    +++|.++..+|++++|
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEA  121 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEA  121 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHH
Confidence                99999999    9999999999999875

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.76  E-value=2.7e-17  Score=100.51  Aligned_cols=112  Identities=13%  Similarity=0.129  Sum_probs=92.2

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH---HHHHHH------------
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA---SLYVHR------------   68 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~------------   68 (116)
                      +...|++++|+..++++++.+|++..++..+|.++...|++++|+..|++++..+|.+.   .++..+            
T Consensus        70 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  149 (450)
T 2y4t_A           70 FLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ  149 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHH
Confidence            45678888888888888888888888888888888888888888888888888888877   665544            


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         69 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        69 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      |.++.. .|++++|+..+++++...|.++.++..+|.++...|++++|
T Consensus       150 a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  196 (450)
T 2y4t_A          150 ALNAFG-SGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKA  196 (450)
T ss_dssp             HHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGG
T ss_pred             HHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHH
Confidence            555666 78888888888888888888888888888888888887764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.76  E-value=1.1e-17  Score=98.53  Aligned_cols=110  Identities=9%  Similarity=0.016  Sum_probs=71.1

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhH-HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVE-ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      ..|++++|...|+++++..|.++. +|..+|.++.+.|++++|+..|++++..+|.+..++...+.+.+...|++++|..
T Consensus       111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~  190 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence            345666666666666666666654 6666666666666666666666666666666655555555443322467777777


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      .|+++++.+|+++.+|..++.++...|++++
T Consensus       191 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~  221 (308)
T 2ond_A          191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNN  221 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH
Confidence            7777777777777777777777777776654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.76  E-value=1.7e-17  Score=104.44  Aligned_cols=112  Identities=8%  Similarity=0.038  Sum_probs=75.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhcc------CCCC-HHHHHHHHHHHHHhc
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV------DPEN-ASLYVHRAMLMLQAR   76 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~-~~~~~~~~~~~~~~~   76 (116)
                      +...|++++|++.|++++...|.++.++..+|.++...|++++|+..|++++..      +|++ ..++..+|.++.. .
T Consensus       451 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~  529 (597)
T 2xpi_A          451 HMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK-L  529 (597)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH-T
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH-h
Confidence            344566677777777777767766666777777777777777777777776665      4443 5666777777665 6


Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         77 GNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        77 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      |++++|++.++++++.+|+++.++..++.++...|++++|
T Consensus       530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  569 (597)
T 2xpi_A          530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLA  569 (597)
T ss_dssp             TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence            7777777777777777777777777777777777766543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.76  E-value=5.6e-17  Score=79.42  Aligned_cols=86  Identities=28%  Similarity=0.453  Sum_probs=80.7

Q ss_pred             CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy12719         25 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG  104 (116)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~  104 (116)
                      |.++.++..+|.++...|++++|+.++++++..+|.++.+++.+|.++.. .|++++|+..+++++..+|+++.++..++
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~   84 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAKQNLG   84 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999888 89999999999999999999999999999


Q ss_pred             HHHHhhc
Q psy12719        105 TIEVQRT  111 (116)
Q Consensus       105 ~~~~~~~  111 (116)
                      .++...|
T Consensus        85 ~~~~~~g   91 (91)
T 1na3_A           85 NAKQKQG   91 (91)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9988764

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.75  E-value=1.5e-17  Score=103.39  Aligned_cols=111  Identities=15%  Similarity=0.246  Sum_probs=105.4

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..+++++..+|+ ..++..+|.++...|++++|+..+++++..+|.++.++..+|.++.. .|++++|+
T Consensus       253 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~  330 (537)
T 3fp2_A          253 HFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI-LQDYKNAK  330 (537)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-cCCHHHHH
Confidence            34578999999999999999999 89999999999999999999999999999999999999999999887 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ..+++++..+|+++.++..+|.++...|++++|
T Consensus       331 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  363 (537)
T 3fp2_A          331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFTES  363 (537)
T ss_dssp             HHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999998764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.75  E-value=5e-18  Score=99.05  Aligned_cols=92  Identities=15%  Similarity=0.086  Sum_probs=87.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..|.+++..+|+++.++..+|.++...|++++|+..+++++..+|+++.+++.+|.++.. .|++++|+
T Consensus        14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~   92 (281)
T 2c2l_A           14 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYDEAI   92 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999887 99999999


Q ss_pred             HHHHHHHhcCCCc
Q psy12719         84 KLIEKAISIDKSC   96 (116)
Q Consensus        84 ~~~~~~~~~~~~~   96 (116)
                      ..+++++..+|++
T Consensus        93 ~~~~~al~l~p~~  105 (281)
T 2c2l_A           93 ANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCccc
Confidence            9999999998865

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.75  E-value=1.5e-17  Score=90.87  Aligned_cols=80  Identities=10%  Similarity=0.050  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12719         11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN--ASLYVHRAMLMLQARGNVDEAIKLIEK   88 (116)
Q Consensus        11 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~   88 (116)
                      .+|+..++++++.+|+++.++..+|.++...|++++|+..|+++++.+|..  +.++..+|.++.. .|+.++|+..|++
T Consensus        91 ~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~-~g~~~~A~~~y~~  169 (176)
T 2r5s_A           91 SPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA-LGQGNAIASKYRR  169 (176)
T ss_dssp             CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH-HCSSCHHHHHHHH
T ss_pred             chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH-hCCCCcHHHHHHH
Confidence            357899999999999999999999999999999999999999999999976  6699999999777 8999999999998


Q ss_pred             HHh
Q psy12719         89 AIS   91 (116)
Q Consensus        89 ~~~   91 (116)
                      ++.
T Consensus       170 al~  172 (176)
T 2r5s_A          170 QLY  172 (176)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.75  E-value=1e-16  Score=89.58  Aligned_cols=101  Identities=11%  Similarity=0.065  Sum_probs=90.9

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH----------------HHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA----------------SLYV   66 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------~~~~   66 (116)
                      ++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++...|.+.                .+++
T Consensus        46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (213)
T 1hh8_A           46 MYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLY  125 (213)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHH
Confidence            356789999999999999999999999999999999999999999999999999888766                8999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy12719         67 HRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG  104 (116)
Q Consensus        67 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~  104 (116)
                      .+|.++.. .|++++|...+++++..+|+........+
T Consensus       126 ~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~a  162 (213)
T 1hh8_A          126 NIAFMYAK-KEEWKKAEEQLALATSMKSEPRHSKIDKA  162 (213)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred             HHHHHHHH-ccCHHHHHHHHHHHHHcCcccccchHHHH
Confidence            99999888 89999999999999999997754444333

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.74  E-value=9.5e-18  Score=98.24  Aligned_cols=112  Identities=13%  Similarity=0.104  Sum_probs=89.8

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh------hHHHHHHHHHHHhh-cChhhHHHHHHHHhccCCCC------HHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQ-EDFDGAEEYFNRSIRVDPEN------ASLYVHRAM   70 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~   70 (116)
                      +...|++++|+..|++++...|..      ..++..+|.++... |++++|+.+|++++.+.|..      ..++.++|.
T Consensus        87 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~  166 (292)
T 1qqe_A           87 FKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD  166 (292)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            456788899999999988887643      45788889988886 99999999999998887754      456888898


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCcHH-------HHHHHHHHHHhhcccccC
Q psy12719         71 LMLQARGNVDEAIKLIEKAISIDKSCMF-------AYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a  116 (116)
                      ++.. +|++++|+..+++++...|+...       ++..+|.++..+|++++|
T Consensus       167 ~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  218 (292)
T 1qqe_A          167 LKAL-DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA  218 (292)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHH-hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH
Confidence            8777 89999999999999988876542       577888888888887654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.74  E-value=3e-18  Score=95.20  Aligned_cols=111  Identities=12%  Similarity=0.031  Sum_probs=95.2

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH----------------HHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA----------------SLYVHR   68 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------~~~~~~   68 (116)
                      ...++++++.+.+.......+.....+..+|..++..|++++|+..|++++...|.++                .++.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   94 (198)
T 2fbn_A           15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL   94 (198)
T ss_dssp             -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence            3456677777777776666677788899999999999999999999999999999887                899999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         69 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        69 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      |.++.. .|++++|+..+.+++..+|+++.++..+|.++...|++++|
T Consensus        95 a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A  141 (198)
T 2fbn_A           95 ATCYNK-NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEA  141 (198)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHH-hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHH
Confidence            999888 89999999999999999999999999999999999998764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.74  E-value=5.4e-17  Score=84.33  Aligned_cols=92  Identities=15%  Similarity=0.168  Sum_probs=86.9

Q ss_pred             CCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q psy12719         24 HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETL  103 (116)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  103 (116)
                      .|.+...+..+|.++...|++++|+..+++++..+|.+..+++.+|.++.. .|++++|+..+++++..+|.++.++..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l   90 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK-LLEFQLALKDCEECIQLEPTFIKGYTRK   90 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT-TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            466788999999999999999999999999999999999999999999877 8999999999999999999999999999


Q ss_pred             HHHHHhhcccccC
Q psy12719        104 GTIEVQRTFVVLW  116 (116)
Q Consensus       104 ~~~~~~~~~~~~a  116 (116)
                      |.++...|++++|
T Consensus        91 a~~~~~~~~~~~A  103 (133)
T 2lni_A           91 AAALEAMKDYTKA  103 (133)
T ss_dssp             HHHHHHTTCHHHH
T ss_pred             HHHHHHHhhHHHH
Confidence            9999999998764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.74  E-value=6.6e-19  Score=108.72  Aligned_cols=110  Identities=10%  Similarity=0.049  Sum_probs=102.0

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---------------HHHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---------------ASLYVHRAM   70 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~~~   70 (116)
                      ..+++++|++.+..++...|.....+..+|..++..|++++|+..|++++..+|.+               ..+++++|.
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            34567778888888888889999999999999999999999999999999999988               689999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         71 LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        71 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +++. +|++++|+..+.+++.++|+++.+++.+|.++..+|++++|
T Consensus       326 ~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A  370 (457)
T 1kt0_A          326 CYLK-LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESA  370 (457)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHH-hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHH
Confidence            9888 99999999999999999999999999999999999998865

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.74  E-value=1e-17  Score=96.48  Aligned_cols=113  Identities=16%  Similarity=0.216  Sum_probs=101.0

Q ss_pred             cccchhcHHHHHHHHHHHHhh--------CCChhHHHHHHHHHHHhhcChhhHHHHHHHHhcc--------CCCCHHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDT--------HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--------DPENASLYV   66 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~   66 (116)
                      .+...|++++|+..+.+++..        .|....++..+|.++...|++++|+.++++++..        +|....++.
T Consensus        52 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  131 (283)
T 3edt_B           52 VYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLN  131 (283)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            345689999999999999987        3666789999999999999999999999999987        466788999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHhhcccccC
Q psy12719         67 HRAMLMLQARGNVDEAIKLIEKAISI--------DKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        67 ~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .+|.++.. .|++++|+..+++++..        .|....++..+|.++...|++++|
T Consensus       132 ~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  188 (283)
T 3edt_B          132 NLALLCQN-QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA  188 (283)
T ss_dssp             HHHHHHHT-TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999887 89999999999999998        677788999999999999998764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.73  E-value=1.3e-16  Score=93.99  Aligned_cols=105  Identities=14%  Similarity=0.111  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHh-------hcCh-------hhHHHHHHHHhc-cCCCCHHHHHHHHHHHHHh
Q psy12719         11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVD-------QEDF-------DGAEEYFNRSIR-VDPENASLYVHRAMLMLQA   75 (116)
Q Consensus        11 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-------~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~   75 (116)
                      ++|+..|++++..+|.++.+|..+|..+..       .|++       ++|+..|++++. ++|++..+|..+|.++.. 
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~-  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES-  111 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-
Confidence            678888888888888888888888887763       4775       788888888888 688888888888888666 


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHhhcccccC
Q psy12719         76 RGNVDEAIKLIEKAISIDKSCMF-AYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        76 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a  116 (116)
                      .|++++|...|+++++..|.++. +|..++.++...|++++|
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A  153 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG  153 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred             cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHH
Confidence            78888888888888888888776 788888888888777653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.72  E-value=4.8e-17  Score=87.76  Aligned_cols=89  Identities=18%  Similarity=0.153  Sum_probs=83.2

Q ss_pred             hhHHHHHHHHHHHhhcChhhHHHHHHHHhcc------------------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12719         27 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRV------------------DPENASLYVHRAMLMLQARGNVDEAIKLIEK   88 (116)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   88 (116)
                      ....+...|..++..|++++|+..|.+++..                  +|....+++++|.+++. .|++++|+..+.+
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~A~~~~~~   88 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-IGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHH
Confidence            3667899999999999999999999999998                  67777899999999888 8999999999999


Q ss_pred             HHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         89 AISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        89 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ++..+|+++.+++.+|.++..+|++++|
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A  116 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEA  116 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHH
Confidence            9999999999999999999999998864

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.72  E-value=2.4e-16  Score=80.15  Aligned_cols=89  Identities=16%  Similarity=0.159  Sum_probs=84.1

Q ss_pred             hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy12719         27 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI  106 (116)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  106 (116)
                      .+..+..+|..+...|++++|+..+++++..+|.++.++..+|.++.. .|++++|+..+++++...|+++.++..+|.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   81 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            467789999999999999999999999999999999999999999888 8999999999999999999999999999999


Q ss_pred             HHhhcccccC
Q psy12719        107 EVQRTFVVLW  116 (116)
Q Consensus       107 ~~~~~~~~~a  116 (116)
                      +...|++++|
T Consensus        82 ~~~~~~~~~A   91 (118)
T 1elw_A           82 LEFLNRFEEA   91 (118)
T ss_dssp             HHHTTCHHHH
T ss_pred             HHHHhhHHHH
Confidence            9999998764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.72  E-value=1.4e-16  Score=92.89  Aligned_cols=91  Identities=19%  Similarity=0.188  Sum_probs=86.8

Q ss_pred             CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy12719         25 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLG  104 (116)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~  104 (116)
                      |.++..+..+|..+...|++++|+..|++++..+|.++.+++++|.++.. .|++++|+..++++++.+|+++.++..+|
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg   79 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFLG   79 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            56678899999999999999999999999999999999999999999888 99999999999999999999999999999


Q ss_pred             HHHHhhcccccC
Q psy12719        105 TIEVQRTFVVLW  116 (116)
Q Consensus       105 ~~~~~~~~~~~a  116 (116)
                      .++..+|++++|
T Consensus        80 ~~~~~~g~~~~A   91 (281)
T 2c2l_A           80 QCQLEMESYDEA   91 (281)
T ss_dssp             HHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHH
Confidence            999999998864

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.4e-17  Score=103.00  Aligned_cols=107  Identities=18%  Similarity=0.168  Sum_probs=54.2

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLI   86 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   86 (116)
                      .|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++.. .|++++|+..+
T Consensus       283 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~  361 (514)
T 2gw1_A          283 RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR-ENKFDDCETLF  361 (514)
T ss_dssp             SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT-TTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            34444444445554444444444455555555555555555555555555555555555555555443 45555555555


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         87 EKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      .+++...|+++.++..+|.++...|+++
T Consensus       362 ~~~~~~~~~~~~~~~~la~~~~~~~~~~  389 (514)
T 2gw1_A          362 SEAKRKFPEAPEVPNFFAEILTDKNDFD  389 (514)
T ss_dssp             HHHHHHSTTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHCCCHH
Confidence            5555555555555555555555555444

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.71  E-value=1.3e-16  Score=82.49  Aligned_cols=93  Identities=25%  Similarity=0.309  Sum_probs=87.1

Q ss_pred             hCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q psy12719         23 THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET  102 (116)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  102 (116)
                      .+|.+...+..+|..+...|++++|+..+++++..+|.++.++..+|.++.. .|++++|+..+.+++...|+++.++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A            7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK-LGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            4466678999999999999999999999999999999999999999999887 899999999999999999999999999


Q ss_pred             HHHHHHhhcccccC
Q psy12719        103 LGTIEVQRTFVVLW  116 (116)
Q Consensus       103 l~~~~~~~~~~~~a  116 (116)
                      +|.++...|++++|
T Consensus        86 ~~~~~~~~~~~~~A   99 (131)
T 2vyi_A           86 MGLALSSLNKHVEA   99 (131)
T ss_dssp             HHHHHHHTTCHHHH
T ss_pred             HHHHHHHhCCHHHH
Confidence            99999999998764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.71  E-value=7.6e-17  Score=99.67  Aligned_cols=112  Identities=22%  Similarity=0.272  Sum_probs=76.5

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHH------HHHHHHHHHHHh--
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS------LYVHRAMLMLQA--   75 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~~~~~--   75 (116)
                      +...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++...|.++.      ++..+|.++...  
T Consensus       348 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  427 (514)
T 2gw1_A          348 AYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT  427 (514)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred             HHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhh
Confidence            455667777777777777777777777777777777777777777777777766666543      667777764331  


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         76 RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        76 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      .|++++|+..+++++..+|+++.++..+|.++...|++++
T Consensus       428 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~  467 (514)
T 2gw1_A          428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE  467 (514)
T ss_dssp             TTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence            4777777777777777777777777777777777776654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.71  E-value=5.4e-16  Score=90.91  Aligned_cols=95  Identities=16%  Similarity=0.207  Sum_probs=88.2

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHH-HHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDE-AIK   84 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~   84 (116)
                      ..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+++.++.++|.++.. .|+.++ +.+
T Consensus       178 ~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~-~g~~~eaa~~  256 (291)
T 3mkr_A          178 GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH-LGKPPEVTNR  256 (291)
T ss_dssp             CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCCHHHHHH
Confidence            358999999999999999999999999999999999999999999999999999999999999999887 898876 578


Q ss_pred             HHHHHHhcCCCcHHHHH
Q psy12719         85 LIEKAISIDKSCMFAYE  101 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~  101 (116)
                      +++++++.+|+++.+..
T Consensus       257 ~~~~~~~~~P~~~~~~d  273 (291)
T 3mkr_A          257 YLSQLKDAHRSHPFIKE  273 (291)
T ss_dssp             HHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHhCCCChHHHH
Confidence            99999999999987654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.71  E-value=5.7e-17  Score=93.39  Aligned_cols=113  Identities=17%  Similarity=0.256  Sum_probs=100.0

Q ss_pred             cccchhcHHHHHHHHHHHHhh--------CCChhHHHHHHHHHHHhhcChhhHHHHHHHHhcc--------CCCCHHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDT--------HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--------DPENASLYV   66 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~   66 (116)
                      ++...|++++|+..+.+++..        +|....++..+|.++...|++++|+.++++++..        .|....++.
T Consensus        94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  173 (283)
T 3edt_B           94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN  173 (283)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            356789999999999999988        4677889999999999999999999999999998        677788999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhc-------------------------------------------------CCCcH
Q psy12719         67 HRAMLMLQARGNVDEAIKLIEKAISI-------------------------------------------------DKSCM   97 (116)
Q Consensus        67 ~~~~~~~~~~~~~~~a~~~~~~~~~~-------------------------------------------------~~~~~   97 (116)
                      .+|.++.. .|++++|+..+++++..                                                 .|..+
T Consensus       174 ~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (283)
T 3edt_B          174 NLASCYLK-QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN  252 (283)
T ss_dssp             HHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred             HHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence            99999888 89999999999999975                                                 24556


Q ss_pred             HHHHHHHHHHHhhcccccC
Q psy12719         98 FAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        98 ~~~~~l~~~~~~~~~~~~a  116 (116)
                      .++..+|.++...|++++|
T Consensus       253 ~~~~~la~~~~~~g~~~~A  271 (283)
T 3edt_B          253 TTLRSLGALYRRQGKLEAA  271 (283)
T ss_dssp             HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHH
Confidence            7889999999999998764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=3.7e-16  Score=82.55  Aligned_cols=93  Identities=20%  Similarity=0.105  Sum_probs=87.0

Q ss_pred             hCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12719         23 THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA   99 (116)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   99 (116)
                      ..|.+...+..+|..+...|++++|+..|++++..+|++   ..+++.+|.++.. .|++++|+..+++++..+|+++.+
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~  101 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-LEDYDKAETEASKAIEKDGGDVKA  101 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHhhCccCHHH
Confidence            456778899999999999999999999999999999988   8899999999888 899999999999999999999999


Q ss_pred             HHHHHHHHHhhcccccC
Q psy12719        100 YETLGTIEVQRTFVVLW  116 (116)
Q Consensus       100 ~~~l~~~~~~~~~~~~a  116 (116)
                      +..+|.++...|++++|
T Consensus       102 ~~~~a~~~~~~~~~~~A  118 (148)
T 2dba_A          102 LYRRSQALEKLGRLDQA  118 (148)
T ss_dssp             HHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHcCCHHHH
Confidence            99999999999998764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.71  E-value=2.1e-17  Score=96.79  Aligned_cols=112  Identities=9%  Similarity=-0.015  Sum_probs=96.3

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCC------hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSN------VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAML   71 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~   71 (116)
                      +...|++++|++.|.+++...+.      .+.++..+|.++...|++++|+.+|++++.+.|..      ..++.++|.+
T Consensus        47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~  126 (292)
T 1qqe_A           47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI  126 (292)
T ss_dssp             HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45678999999999999987532      25689999999999999999999999999987654      4578999999


Q ss_pred             HHHhc-CCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhhcccccC
Q psy12719         72 MLQAR-GNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        72 ~~~~~-~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.. . |++++|+..+++++.+.|..      ..++..+|.++..+|++++|
T Consensus       127 ~~~-~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  177 (292)
T 1qqe_A          127 LEN-DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA  177 (292)
T ss_dssp             HHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHH-hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence            776 6 99999999999999997754      46789999999999998864

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.70  E-value=2.3e-16  Score=81.83  Aligned_cols=87  Identities=11%  Similarity=-0.004  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHH
Q psy12719         29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA---SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC---MFAYET  102 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~  102 (116)
                      ..++.+|..+...|++++|+..|++++..+|+++   .+++.+|.+++. .|++++|+..+++++..+|++   +.++..
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA-TRNFQLAEAQFRDLVSRYPTHDKAAGGLLK   81 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence            3567899999999999999999999999999988   799999999888 899999999999999999998   888999


Q ss_pred             HHHHHHhhcccccC
Q psy12719        103 LGTIEVQRTFVVLW  116 (116)
Q Consensus       103 l~~~~~~~~~~~~a  116 (116)
                      +|.++...|++++|
T Consensus        82 la~~~~~~g~~~~A   95 (129)
T 2xev_A           82 LGLSQYGEGKNTEA   95 (129)
T ss_dssp             HHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHH
Confidence            99999999998764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.70  E-value=3.4e-16  Score=78.34  Aligned_cols=90  Identities=16%  Similarity=0.183  Sum_probs=76.4

Q ss_pred             hCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHH
Q psy12719         23 THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC--MFAY  100 (116)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~  100 (116)
                      .+|+++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++.. .|++++|++.+++++++.|..  ....
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~~~~~~~~~   80 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTDDAIDTYAQGIEVAREEGTQKDL   80 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence            4689999999999999999999999999999999999999999999999888 999999999999999987644  4455


Q ss_pred             HHHHHHHHhhccc
Q psy12719        101 ETLGTIEVQRTFV  113 (116)
Q Consensus       101 ~~l~~~~~~~~~~  113 (116)
                      ..+..++...+..
T Consensus        81 ~~l~~~l~~~~~~   93 (100)
T 3ma5_A           81 SELQDAKLKAEGL   93 (100)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcccc
Confidence            5666666555543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.70  E-value=6.7e-16  Score=79.17  Aligned_cols=92  Identities=25%  Similarity=0.349  Sum_probs=84.0

Q ss_pred             CCCh-hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q psy12719         24 HSNV-VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET  102 (116)
Q Consensus        24 ~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  102 (116)
                      +|.. ..++..+|.++...|++++|+..+++++...|.+..++..+|.++.. .|++++|+..+++++...|.++.++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~   82 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAWYN   82 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            4544 77899999999999999999999999999999999999999999887 899999999999999999999999999


Q ss_pred             HHHHHHhhcccccC
Q psy12719        103 LGTIEVQRTFVVLW  116 (116)
Q Consensus       103 l~~~~~~~~~~~~a  116 (116)
                      ++.++...|++++|
T Consensus        83 la~~~~~~~~~~~A   96 (125)
T 1na0_A           83 LGNAYYKQGDYDEA   96 (125)
T ss_dssp             HHHHHHHTTCHHHH
T ss_pred             HHHHHHHhcCHHHH
Confidence            99999999988764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.69  E-value=5e-16  Score=90.90  Aligned_cols=112  Identities=12%  Similarity=0.111  Sum_probs=93.6

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh------hHHHHHHHHHHHhhcChhhHHHHHHHHh---ccCCCCH----HHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSI---RVDPENA----SLYVHRAM   70 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~---~~~~~~~----~~~~~~~~   70 (116)
                      +...|++++|+..+.+++...+..      ..++..+|.++...|++++|+.+|++++   ...|.+.    .+++++|.
T Consensus       125 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~  204 (293)
T 2qfc_A          125 VLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAK  204 (293)
T ss_dssp             HHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHH
Confidence            345679999999999999765433      5588999999999999999999999998   4455542    68999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHhhcccccC
Q psy12719         71 LMLQARGNVDEAIKLIEKAISIDKS------CMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        71 ~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ++.. +|++++|+..+++++...+.      ...++..+|.++..+|++++|
T Consensus       205 ~y~~-~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          205 ALYL-DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHH-HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            9888 89999999999999987543      267899999999999998764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.69  E-value=2.3e-16  Score=81.58  Aligned_cols=91  Identities=19%  Similarity=0.281  Sum_probs=84.1

Q ss_pred             CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-------H
Q psy12719         25 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC-------M   97 (116)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~   97 (116)
                      |..+..+..+|.++...|++++|+..+.+++..+|.++.+++.+|.++.. .|++++|+..+.+++...|.+       +
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   79 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQIA   79 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhccccchhHHHHH
Confidence            34567889999999999999999999999999999999999999999887 899999999999999998876       8


Q ss_pred             HHHHHHHHHHHhhcccccC
Q psy12719         98 FAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        98 ~~~~~l~~~~~~~~~~~~a  116 (116)
                      .++..+|.++...|++++|
T Consensus        80 ~~~~~la~~~~~~~~~~~A   98 (131)
T 1elr_A           80 KAYARIGNSYFKEEKYKDA   98 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccHHHH
Confidence            8999999999999998764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.68  E-value=1e-15  Score=79.32  Aligned_cols=91  Identities=21%  Similarity=0.400  Sum_probs=86.0

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++.. .|++++|.
T Consensus        45 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~  123 (136)
T 2fo7_A           45 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAI  123 (136)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-HccHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999877 89999999


Q ss_pred             HHHHHHHhcCCC
Q psy12719         84 KLIEKAISIDKS   95 (116)
Q Consensus        84 ~~~~~~~~~~~~   95 (116)
                      ..+.+++..+|+
T Consensus       124 ~~~~~~~~~~~~  135 (136)
T 2fo7_A          124 EYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHHHHSTT
T ss_pred             HHHHHHHccCCC
Confidence            999999998886

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.68  E-value=1.8e-16  Score=95.58  Aligned_cols=112  Identities=14%  Similarity=0.123  Sum_probs=94.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCC-------hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSN-------VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAM   70 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~   70 (116)
                      +...|++++|+..+.+++...+.       ...++..+|.++...|++++|+.++++++.+.|..      ..++.++|.
T Consensus       153 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~  232 (383)
T 3ulq_A          153 YYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL  232 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            45678999999999999987543       34588899999999999999999999999875533      357899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHh-----cC-CCcHHHHHHHHHHHHhhcccccC
Q psy12719         71 LMLQARGNVDEAIKLIEKAIS-----ID-KSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        71 ~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ++.. .|++++|+..+++++.     .+ |..+.++..+|.++..+|++++|
T Consensus       233 ~y~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  283 (383)
T 3ulq_A          233 CKNS-QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKA  283 (383)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHH-CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHH
Confidence            9887 8999999999999998     46 77788999999999999998764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.68  E-value=1.8e-16  Score=92.50  Aligned_cols=113  Identities=16%  Similarity=0.262  Sum_probs=99.8

Q ss_pred             cccchhcHHHHHHHHHHHHhhC--------CChhHHHHHHHHHHHhhcChhhHHHHHHHHhcc--------CCCCHHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTH--------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV--------DPENASLYV   66 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~   66 (116)
                      ++...|++++|+..+++++...        |....++..+|.++...|++++|+.++++++..        .|....++.
T Consensus       120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  199 (311)
T 3nf1_A          120 LYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKN  199 (311)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3567899999999999999874        556778999999999999999999999999987        666778899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhc-------------------------------------------------CCCcH
Q psy12719         67 HRAMLMLQARGNVDEAIKLIEKAISI-------------------------------------------------DKSCM   97 (116)
Q Consensus        67 ~~~~~~~~~~~~~~~a~~~~~~~~~~-------------------------------------------------~~~~~   97 (116)
                      .+|.++.. .|++++|+..+++++..                                                 .|..+
T Consensus       200 ~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  278 (311)
T 3nf1_A          200 NLASCYLK-QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVT  278 (311)
T ss_dssp             HHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHH
T ss_pred             HHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHH
Confidence            99999888 89999999999999974                                                 46667


Q ss_pred             HHHHHHHHHHHhhcccccC
Q psy12719         98 FAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        98 ~~~~~l~~~~~~~~~~~~a  116 (116)
                      .++..+|.++...|++++|
T Consensus       279 ~~~~~la~~~~~~g~~~~A  297 (311)
T 3nf1_A          279 TTLKNLGALYRRQGKFEAA  297 (311)
T ss_dssp             HHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHH
Confidence            8899999999999998864

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.68  E-value=1.1e-15  Score=82.15  Aligned_cols=88  Identities=19%  Similarity=0.266  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE  107 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  107 (116)
                      +..+..+|..+...|++++|+..|++++..+|.++.++..+|.++.. .|++++|+..+.+++..+|.++.++..+|.++
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999887 89999999999999999999999999999999


Q ss_pred             HhhcccccC
Q psy12719        108 VQRTFVVLW  116 (116)
Q Consensus       108 ~~~~~~~~a  116 (116)
                      ...|++++|
T Consensus        92 ~~~~~~~~A  100 (166)
T 1a17_A           92 MALGKFRAA  100 (166)
T ss_dssp             HHTTCHHHH
T ss_pred             HHhccHHHH
Confidence            999998764

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.67  E-value=3.6e-16  Score=91.51  Aligned_cols=112  Identities=11%  Similarity=0.120  Sum_probs=91.2

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh------hHHHHHHHHHHHhhcChhhHHHHHHHHhcc-------CCCCHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSIRV-------DPENASLYVHRAM   70 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~~~~~~   70 (116)
                      +...+++++|+..+++++...+..      ..++..+|.++...|++++|+.+|++++..       .+....+++++|.
T Consensus       125 ~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~  204 (293)
T 3u3w_A          125 VLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAK  204 (293)
T ss_dssp             HTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             HHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence            345678999999999999865443      237899999999999999999999999942       2233568899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhhcc-cccC
Q psy12719         71 LMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRTF-VVLW  116 (116)
Q Consensus        71 ~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~-~~~a  116 (116)
                      ++.. +|++++|+..++++++..+..      ..++..+|.++..+|+ +++|
T Consensus       205 ~y~~-~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A  256 (293)
T 3u3w_A          205 ALYL-DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEI  256 (293)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHH-HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            9888 899999999999999875433      7889999999999995 3543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.66  E-value=2.1e-16  Score=92.26  Aligned_cols=112  Identities=15%  Similarity=0.215  Sum_probs=99.3

Q ss_pred             ccchhcHHHHHHHHHHHHhh--------CCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC--------CCCHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDT--------HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--------PENASLYVH   67 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~   67 (116)
                      +...|++++|+..+++++..        .|....++..+|.++...|++++|+.++++++...        |....++..
T Consensus        79 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  158 (311)
T 3nf1_A           79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN  158 (311)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            45679999999999999987        35667899999999999999999999999999874        555778999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHhhcccccC
Q psy12719         68 RAMLMLQARGNVDEAIKLIEKAISI--------DKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        68 ~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +|.++.. .|++++|++.+++++..        .|....++..+|.++...|++++|
T Consensus       159 la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  214 (311)
T 3nf1_A          159 LALLCQN-QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA  214 (311)
T ss_dssp             HHHHHHT-TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHH-cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999877 89999999999999998        677788999999999999998764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.66  E-value=2.8e-15  Score=92.21  Aligned_cols=111  Identities=14%  Similarity=0.056  Sum_probs=93.1

Q ss_pred             cccchhcHHHHHHHHHHHHhh---------CCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC--------CCCHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDT---------HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--------PENASLY   65 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~   65 (116)
                      ++...|++++|++.|++++++         +|....++.++|.+|...|++++|+.++++++.+.        +..+.++
T Consensus        60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~  139 (472)
T 4g1t_A           60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD  139 (472)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence            345679999999999999876         45566789999999999999999999999998763        3557788


Q ss_pred             HHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccc
Q psy12719         66 VHRAMLMLQA-RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFV  113 (116)
Q Consensus        66 ~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  113 (116)
                      ..+|.++... .+++++|++.|+++++.+|+++.++..++.++...+++
T Consensus       140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~  188 (472)
T 4g1t_A          140 CEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW  188 (472)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence            8888876652 35799999999999999999999999999987766554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.64  E-value=8e-16  Score=93.14  Aligned_cols=108  Identities=13%  Similarity=0.118  Sum_probs=97.4

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChh----HHHHHHHHHHHhhcChhhHHHHHHHHhcc------CCCCHHHHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVV----EACTLFAQVLVDQEDFDGAEEYFNRSIRV------DPENASLYVHRAMLML   73 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~~~~~~~   73 (116)
                      +...|++++|+..|++++...|++.    .++..+|.++...|++++|+.++++++..      .|....++..+|.++.
T Consensus        58 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  137 (411)
T 4a1s_A           58 LCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK  137 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence            4567899999999999999999986    58899999999999999999999999987      5666789999999988


Q ss_pred             HhcCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHhhcc
Q psy12719         74 QARGNVDEAIKLIEKAISI------DKSCMFAYETLGTIEVQRTF  112 (116)
Q Consensus        74 ~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~  112 (116)
                      . .|++++|+..+.+++..      .|....++..+|.++...|+
T Consensus       138 ~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          138 V-MGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             H-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-CCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            7 89999999999999988      45567789999999999998

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.64  E-value=1.4e-15  Score=93.48  Aligned_cols=110  Identities=14%  Similarity=0.111  Sum_probs=71.0

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh----------
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA----------   75 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------   75 (116)
                      ..+++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...          
T Consensus       225 ~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~  304 (472)
T 4g1t_A          225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLREN  304 (472)
T ss_dssp             -----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             hhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            4456677777777777777777777777777777777777777777777777777777777776664320          


Q ss_pred             --------cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         76 --------RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        76 --------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                              .+.+++|+..+.+++..+|....++..+|.++...|++++
T Consensus       305 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~  352 (472)
T 4g1t_A          305 GMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE  352 (472)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHH
Confidence                    1234556666666666666666666666666666666554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.64  E-value=3.1e-16  Score=94.59  Aligned_cols=112  Identities=13%  Similarity=0.023  Sum_probs=95.3

Q ss_pred             ccchhcHHHHHHHHHHHHhhC---C---ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC-------HHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTH---S---NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-------ASLYVHRAM   70 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~   70 (116)
                      +...|++++|+..+++++...   +   ..+.++..+|.++...|++++|+.++.+++.+.+..       ..++..+|.
T Consensus       113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~  192 (383)
T 3ulq_A          113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT  192 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            456799999999999999872   2   246789999999999999999999999999874433       458999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhhcccccC
Q psy12719         71 LMLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        71 ~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ++.. .|++++|+..+.+++...+..      ..++.++|.++..+|++++|
T Consensus       193 ~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  243 (383)
T 3ulq_A          193 NFLD-LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA  243 (383)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHH-hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence            9887 899999999999999875433      35899999999999998764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.63  E-value=6.7e-16  Score=82.33  Aligned_cols=112  Identities=12%  Similarity=0.006  Sum_probs=94.5

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChh------HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVV------EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAML   71 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~   71 (116)
                      +...|++++|+..+.+++...+...      .++..+|.++...|++++|+..+++++...+..      ..++..+|.+
T Consensus        19 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~   98 (164)
T 3ro3_A           19 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT   98 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            4567899999999999998875543      488899999999999999999999999876543      5678999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHhhcccccC
Q psy12719         72 MLQARGNVDEAIKLIEKAISIDK------SCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        72 ~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.. .|++++|+..+++++...+      ....++..++.++...|++++|
T Consensus        99 ~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  148 (164)
T 3ro3_A           99 YTL-LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA  148 (164)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHH-HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence            887 8999999999999997733      2256788999999999998764

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.63  E-value=8.8e-17  Score=81.36  Aligned_cols=83  Identities=8%  Similarity=0.112  Sum_probs=74.6

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHHHHHHHHHhcC
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLMLQARG   77 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~   77 (116)
                      +...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|++      ..+++.+|.++.. .|
T Consensus        14 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-~~   92 (111)
T 2l6j_A           14 LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGA-VG   92 (111)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHH-HH
Confidence            4578999999999999999999999999999999999999999999999999999998      8889999999776 77


Q ss_pred             CHHHHHHHHH
Q psy12719         78 NVDEAIKLIE   87 (116)
Q Consensus        78 ~~~~a~~~~~   87 (116)
                      +++.|+..++
T Consensus        93 ~~~~a~~~~~  102 (111)
T 2l6j_A           93 SVQIPVVEVD  102 (111)
T ss_dssp             CCCCCSSSSS
T ss_pred             hHhhhHhHHH
Confidence            7766655443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.63  E-value=3.7e-16  Score=80.20  Aligned_cols=76  Identities=9%  Similarity=-0.044  Sum_probs=67.7

Q ss_pred             hhcChhhHHHHHHHHhcc---CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         40 DQEDFDGAEEYFNRSIRV---DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        40 ~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ..|++++|+..|++++..   +|.++.+++.+|.++.. .|++++|+..++++++.+|+++.++..+|.++...|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT-LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence            468999999999999999   68889999999999888 99999999999999999999999999999999999998764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.62  E-value=5.6e-15  Score=92.50  Aligned_cols=111  Identities=9%  Similarity=0.006  Sum_probs=90.4

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChh-HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVV-EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      ...|++++|...|++++...|.++ .+|..++.++.+.|++++|+..|++++...|.....+...+.+.+...|++++|.
T Consensus       332 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~  411 (530)
T 2ooe_A          332 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF  411 (530)
T ss_dssp             HHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHH
Confidence            356788888888888888888774 5888888888888888888888888888888777777666665433378999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      ..|+++++.+|+++.+|..++.++...|+.++
T Consensus       412 ~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~  443 (530)
T 2ooe_A          412 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN  443 (530)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhh
Confidence            99999999999888899999988888887764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.62  E-value=1.9e-14  Score=83.16  Aligned_cols=105  Identities=13%  Similarity=0.161  Sum_probs=71.8

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHh----hcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh---cC
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA---RG   77 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~   77 (116)
                      ...|++++|+.+|+++++  |+++.++..+|.++..    .+++++|+.+|+++++.+  ++.+++.+|.++...   .+
T Consensus        17 ~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~   92 (273)
T 1ouv_A           17 YKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQ   92 (273)
T ss_dssp             HHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCC
T ss_pred             HhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCccc
Confidence            445677777777777776  5666677777777777    777777777777777664  666777777774430   47


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh----hccccc
Q psy12719         78 NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ----RTFVVL  115 (116)
Q Consensus        78 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~  115 (116)
                      ++++|+..++++++.  +++.++..+|.++..    .+++++
T Consensus        93 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~  132 (273)
T 1ouv_A           93 NTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKK  132 (273)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             CHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHH
Confidence            777777777777765  356667777777766    666554

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.62  E-value=9.7e-16  Score=92.27  Aligned_cols=112  Identities=12%  Similarity=0.026  Sum_probs=92.1

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhH------HHHHHHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVE------ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAML   71 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~   71 (116)
                      +...|++++|+..+++++...|....      ++..+|.++...|++++|+.++++++...|..      ..++..+|.+
T Consensus       197 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  276 (406)
T 3sf4_A          197 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT  276 (406)
T ss_dssp             HHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHH
Confidence            45678999999999999887655433      88889999999999999999999998876655      6678889999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhhcccccC
Q psy12719         72 MLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        72 ~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.. .|++++|+..+++++...+..      ..++..+|.++...|++++|
T Consensus       277 ~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          277 YTL-LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHH-hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            777 899999999999998875433      66788899999999888764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.62  E-value=3.5e-14  Score=83.09  Aligned_cols=112  Identities=8%  Similarity=-0.008  Sum_probs=93.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChh------HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVV------EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAML   71 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~   71 (116)
                      +...|++++|++.+.+++...|...      ..+..+|.++...|++++|+..+++++...+..      ..++..+|.+
T Consensus        85 ~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~  164 (293)
T 2qfc_A           85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANI  164 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            3467899999999999999877643      346678889999999999999999999865543      5689999999


Q ss_pred             HHHhcCCHHHHHHHHHHHH---hcCCCc----HHHHHHHHHHHHhhcccccC
Q psy12719         72 MLQARGNVDEAIKLIEKAI---SIDKSC----MFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        72 ~~~~~~~~~~a~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.. .|++++|+..+++++   +..|++    ..++.++|.++..+|++++|
T Consensus       165 y~~-~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A  215 (293)
T 2qfc_A          165 YAE-NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEES  215 (293)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHH-cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHH
Confidence            888 899999999999999   445553    26899999999999999875

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.61  E-value=1.7e-15  Score=83.87  Aligned_cols=112  Identities=18%  Similarity=0.186  Sum_probs=89.2

Q ss_pred             ccchhcHHHHHHHHHHHHh------hCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhcc---CCC----CHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVD------THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRV---DPE----NASLYVHRAM   70 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~----~~~~~~~~~~   70 (116)
                      +...|++++|+..+++++.      ..|....++..+|.++...|++++|+..+++++..   .++    ...++..+|.
T Consensus        36 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~  115 (203)
T 3gw4_A           36 YAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVAT  115 (203)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHH
Confidence            4567899999999999988      33455678899999999999999999999999887   342    2456888999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCC--c----HHHHHHHHHHHHhhcccccC
Q psy12719         71 LMLQARGNVDEAIKLIEKAISIDKS--C----MFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        71 ~~~~~~~~~~~a~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ++.. .|++++|...+++++...+.  +    ..++..+|.++...|++++|
T Consensus       116 ~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  166 (203)
T 3gw4_A          116 VALH-FGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA  166 (203)
T ss_dssp             HHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHH-hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence            9887 89999999999999876321  1    34568899999999988764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.61  E-value=2.6e-15  Score=90.52  Aligned_cols=113  Identities=12%  Similarity=0.018  Sum_probs=95.7

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCC-------hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC------CHHHHHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSN-------VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE------NASLYVHRA   69 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~~   69 (116)
                      ++...|++++|+..+.+++...+.       ...++..+|.++...|++++|+..+++++.+.+.      ...++.++|
T Consensus       150 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg  229 (378)
T 3q15_A          150 AYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIA  229 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345678999999999999987543       2457889999999999999999999999986431      245788999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHh-----cCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         70 MLMLQARGNVDEAIKLIEKAIS-----IDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        70 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .++.. .|++++|+..+++++.     .+|..+.++..+|.++...|++++|
T Consensus       230 ~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  280 (378)
T 3q15_A          230 NSYDR-SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKA  280 (378)
T ss_dssp             HHHHH-HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHH-CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHH
Confidence            99887 8999999999999999     7888888999999999999998764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.60  E-value=2.8e-15  Score=87.99  Aligned_cols=108  Identities=16%  Similarity=0.154  Sum_probs=94.5

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh----hHHHHHHHHHHHhhcChhhHHHHHHHHhcc------CCCCHHHHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV----VEACTLFAQVLVDQEDFDGAEEYFNRSIRV------DPENASLYVHRAMLML   73 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~~~~~~~   73 (116)
                      +...|++++|+..+++++...|++    ..++..+|.++...|++++|+..+++++..      .|....++..+|.++.
T Consensus        15 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~   94 (338)
T 3ro2_A           15 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK   94 (338)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence            456799999999999999999988    467889999999999999999999999877      4455778999999988


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhhcc
Q psy12719         74 QARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRTF  112 (116)
Q Consensus        74 ~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~  112 (116)
                      . .|++++|+..+.+++...+..      ..++..+|.++...|+
T Consensus        95 ~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           95 V-LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             H-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            7 899999999999999875543      4488899999999998

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.59  E-value=8.2e-16  Score=90.61  Aligned_cols=110  Identities=15%  Similarity=0.126  Sum_probs=70.8

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCC------hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSN------VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAML   71 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~   71 (116)
                      +..+|++++|+..|++++...+.      ...++..+|.++.. |++++|+.+|++++.+.|..      ..++.++|.+
T Consensus        86 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~  164 (307)
T 2ifu_A           86 LKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRL  164 (307)
T ss_dssp             HHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence            34456777777777777666422      13466677777766 77777777777777665533      4566777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhhccccc
Q psy12719         72 MLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        72 ~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~  115 (116)
                      +.. +|++++|+..+++++...|..      ..++..++.++..+|++++
T Consensus       165 ~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~  213 (307)
T 2ifu_A          165 LVR-QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA  213 (307)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHH-cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHH
Confidence            666 677777777777777764432      2356666667766666654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.59  E-value=1.8e-14  Score=79.68  Aligned_cols=111  Identities=11%  Similarity=0.027  Sum_probs=89.7

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhc------cCCCCHHHHHHHHHHHHHhcCC
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR------VDPENASLYVHRAMLMLQARGN   78 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~~   78 (116)
                      ...|++++|.+.++......+....++..+|.++...|++++|+..+++++.      ..|....++..+|.++.. .|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM-AGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TTC
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-cCC
Confidence            4679999999965555443346788999999999999999999999999998      444557789999999887 899


Q ss_pred             HHHHHHHHHHHHhc---CC----CcHHHHHHHHHHHHhhcccccC
Q psy12719         79 VDEAIKLIEKAISI---DK----SCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        79 ~~~a~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +++|+..+.+++..   .+    ....++..+|.++...|++++|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  126 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGA  126 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            99999999999988   33    2356789999999999998764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.59  E-value=3.3e-15  Score=89.99  Aligned_cols=108  Identities=16%  Similarity=0.162  Sum_probs=95.0

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChh----HHHHHHHHHHHhhcChhhHHHHHHHHhcc------CCCCHHHHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVV----EACTLFAQVLVDQEDFDGAEEYFNRSIRV------DPENASLYVHRAMLML   73 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~~~~~~~   73 (116)
                      +...|++++|+..|++++...|.++    .++..+|.++...|++++|+.++++++..      .|....++..+|.++.
T Consensus        19 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~   98 (406)
T 3sf4_A           19 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK   98 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            4567999999999999999999874    57889999999999999999999999876      3444678999999988


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhhcc
Q psy12719         74 QARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRTF  112 (116)
Q Consensus        74 ~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~  112 (116)
                      . .|++++|+..+.+++...|..      ..++..+|.++...|+
T Consensus        99 ~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           99 V-LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             H-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence            7 899999999999999986654      4589999999999998

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.59  E-value=1.5e-15  Score=91.94  Aligned_cols=112  Identities=12%  Similarity=0.029  Sum_probs=94.7

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhH------HHHHHHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVE------ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAML   71 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~   71 (116)
                      +...|++++|+..+++++...|....      ++..+|.++...|++++|+..+++++...|..      ..++..+|.+
T Consensus       233 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  312 (411)
T 4a1s_A          233 YYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNT  312 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45678999999999999988776544      88899999999999999999999999887654      6678899999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhhcccccC
Q psy12719         72 MLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        72 ~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.. .|++++|...+++++...+..      ..++..+|.++...|++++|
T Consensus       313 ~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  362 (411)
T 4a1s_A          313 YTL-LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA  362 (411)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHH-cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHH
Confidence            877 899999999999999875433      55888999999999988764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.58  E-value=7.2e-14  Score=87.54  Aligned_cols=105  Identities=13%  Similarity=0.116  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHh-------hcChh-------hHHHHHHHHhc-cCCCCHHHHHHHHHHHHHh
Q psy12719         11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVD-------QEDFD-------GAEEYFNRSIR-VDPENASLYVHRAMLMLQA   75 (116)
Q Consensus        11 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-------~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~   75 (116)
                      .+++..|++++..+|.++.+|..+|..+..       .|+++       +|+..|++++. ..|++..+|..++..+.. 
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~-  333 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES-  333 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-
Confidence            467789999999999999999999998876       68877       89999999997 789999999999998776 


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHhhcccccC
Q psy12719         76 RGNVDEAIKLIEKAISIDKSCM-FAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        76 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a  116 (116)
                      .|++++|...++++++..|.++ .+|..++.++...|++++|
T Consensus       334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A  375 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG  375 (530)
T ss_dssp             TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHH
Confidence            8999999999999999999875 5899999988888876653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.58  E-value=1.9e-14  Score=84.19  Aligned_cols=111  Identities=9%  Similarity=0.009  Sum_probs=91.5

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhH------HHHHHHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVE------ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLM   72 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~   72 (116)
                      ...|++++|+..+++++...+..+.      .+..+|.++...+++++|+.++++++...+..      ..++.++|.++
T Consensus        86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  165 (293)
T 3u3w_A           86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY  165 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence            4578999999999999998776544      33458889989999999999999999865432      34789999998


Q ss_pred             HHhcCCHHHHHHHHHHHHhc-------CCCcHHHHHHHHHHHHhhcccccC
Q psy12719         73 LQARGNVDEAIKLIEKAISI-------DKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        73 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .. .|++++|+..++++++.       .+....++.++|.++..+|++++|
T Consensus       166 ~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A  215 (293)
T 3u3w_A          166 AE-NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEES  215 (293)
T ss_dssp             HH-TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HH-cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence            87 89999999999999952       223356899999999999998875

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.58  E-value=3.8e-15  Score=87.41  Aligned_cols=112  Identities=12%  Similarity=0.019  Sum_probs=94.2

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChh------HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVV------EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAML   71 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~   71 (116)
                      +...|++++|+..+++++...+...      .++..+|.++...|++++|+..+++++...|..      ..++..+|.+
T Consensus       193 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  272 (338)
T 3ro2_A          193 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT  272 (338)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence            4567899999999999998765543      388999999999999999999999999876655      6688899999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhhcccccC
Q psy12719         72 MLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        72 ~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.. .|++++|...+++++...+..      ..++..++.++...|++++|
T Consensus       273 ~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  322 (338)
T 3ro2_A          273 YTL-LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA  322 (338)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHH-hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            877 899999999999999875543      55788999999999998764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.57  E-value=1.3e-14  Score=84.41  Aligned_cols=111  Identities=8%  Similarity=-0.056  Sum_probs=89.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC--HHHHHHHHHHHHHhcCCHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN--ASLYVHRAMLMLQARGNVDE   81 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~   81 (116)
                      +...|+|++|.+.|...+...|++. +.+.+|.++...+++++|+..|+.+....+..  ..+++.+|.++.. +|++++
T Consensus       112 L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~-LG~~~e  189 (282)
T 4f3v_A          112 EAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN-LALFTE  189 (282)
T ss_dssp             HHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH-CCCHHH
Confidence            4567889999999999888888888 88889999999999999999998777653221  3478888998666 899999


Q ss_pred             HHHHHHHHHhcC--CC-cHHHHHHHHHHHHhhcccccC
Q psy12719         82 AIKLIEKAISID--KS-CMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        82 a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      |+..|++++.-.  |. .+.+++.+|.++..+|+.++|
T Consensus       190 Al~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA  227 (282)
T 4f3v_A          190 AERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAA  227 (282)
T ss_dssp             HHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHH
Confidence            999999988543  55 567889999999999988764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.57  E-value=5.6e-14  Score=82.17  Aligned_cols=93  Identities=10%  Similarity=0.011  Sum_probs=81.9

Q ss_pred             hCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH--------------
Q psy12719         23 THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK--------------   88 (116)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------------   88 (116)
                      ..|++.+.+..+|..+...|++++|+..|++++..+|+++.+++.+|.++.. .|++++|+..+++              
T Consensus       112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~~~~  190 (287)
T 3qou_A          112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIA-LNRSEDAEAVLXTIPLQDQDTRYQGLV  190 (287)
T ss_dssp             HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-TTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred             HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH-CCCHHHHHHHHHhCchhhcchHHHHHH
Confidence            3489999999999999999999999999999999999999999999999887 8998887655544              


Q ss_pred             --------------------HHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         89 --------------------AISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        89 --------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                                          ++..+|+++.++..+|.++...|++++|
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A  238 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEA  238 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHH
Confidence                                4566888888999999999999988764

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.57  E-value=1.7e-14  Score=87.18  Aligned_cols=88  Identities=14%  Similarity=0.054  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHhc----------------cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSIR----------------VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAIS   91 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   91 (116)
                      ...+..+|..++..|++++|+..|++++.                .+|....++.++|.+++. +|++++|+..++++++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHH
Confidence            45688999999999999999999999998                777888999999999888 9999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         92 IDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        92 ~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .+|+++.+++.+|.++..+|++++|
T Consensus       302 ~~p~~~~a~~~lg~~~~~~g~~~eA  326 (370)
T 1ihg_A          302 IDPSNTKALYRRAQGWQGLKEYDQA  326 (370)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hCchhHHHHHHHHHHHHHccCHHHH
Confidence            9999999999999999999998865

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.57  E-value=3.6e-15  Score=89.06  Aligned_cols=93  Identities=12%  Similarity=0.068  Sum_probs=85.2

Q ss_pred             hCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH-----------------HHHHHHHHHHHHhcCCHHHHHHH
Q psy12719         23 THSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA-----------------SLYVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      ..+.....+..+|..++..|++++|+..|++++...|.+.                 .+++++|.+++. +|++++|+..
T Consensus       174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~-~g~~~~A~~~  252 (338)
T 2if4_A          174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK-LKRYDEAIGH  252 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT-TTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHH
Confidence            3345567889999999999999999999999999999877                 489999999887 8999999999


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         86 IEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.+++..+|+++.+++.+|.++..+|++++|
T Consensus       253 ~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A  283 (338)
T 2if4_A          253 CNIVLTEEEKNPKALFRRGKAKAELGQMDSA  283 (338)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999999998864

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.56  E-value=3.9e-14  Score=69.10  Aligned_cols=71  Identities=18%  Similarity=0.301  Sum_probs=67.2

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ   74 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   74 (116)
                      +...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus        19 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   89 (91)
T 1na3_A           19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK   89 (91)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            45678999999999999999999999999999999999999999999999999999999999999998665

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.56  E-value=5.5e-15  Score=87.07  Aligned_cols=111  Identities=16%  Similarity=0.147  Sum_probs=93.1

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAML   71 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~   71 (116)
                      +...|++++|+..|.+++...+..      ..++..+|.++...|++++|+.+|++++.+.+..      ..++.++|.+
T Consensus        46 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~  125 (307)
T 2ifu_A           46 FKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKL  125 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            456789999999999999886532      4588899999999999999999999999875432      4578899999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhhcccccC
Q psy12719         72 MLQARGNVDEAIKLIEKAISIDKSC------MFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        72 ~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a  116 (116)
                      + .. |++++|+..+++++.+.|..      ..++.++|.++..+|++++|
T Consensus       126 ~-~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  174 (307)
T 2ifu_A          126 M-EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEA  174 (307)
T ss_dssp             H-TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             H-Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence            5 43 99999999999999987643      57889999999999998864

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.56  E-value=2.8e-15  Score=74.55  Aligned_cols=68  Identities=15%  Similarity=0.190  Sum_probs=46.2

Q ss_pred             HHHHHHHHhhcChhhHHHHHHHHhccCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q psy12719         32 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS-LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY  100 (116)
Q Consensus        32 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  100 (116)
                      +..|..+...|++++|+..|++++..+|.++. +++.+|.++.. .|++++|++.+++++..+|+++.++
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            34566666677777777777777777777666 67777776665 6777777777777777777666555

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.56  E-value=1.6e-15  Score=94.19  Aligned_cols=89  Identities=19%  Similarity=0.255  Sum_probs=83.2

Q ss_pred             hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy12719         27 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI  106 (116)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  106 (116)
                      .+..+..+|..+...|++++|+..|+++++.+|++..++.++|.++.. +|++++|++.++++++.+|+++.++..+|.+
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   83 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAAS   83 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            345667788889999999999999999999999999999999999888 9999999999999999999999999999999


Q ss_pred             HHhhcccccC
Q psy12719        107 EVQRTFVVLW  116 (116)
Q Consensus       107 ~~~~~~~~~a  116 (116)
                      +..+|++++|
T Consensus        84 ~~~~g~~~eA   93 (477)
T 1wao_1           84 NMALGKFRAA   93 (477)
T ss_dssp             HHHHTCHHHH
T ss_pred             HHHcCCHHHH
Confidence            9999998875

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.55  E-value=2e-13  Score=80.61  Aligned_cols=106  Identities=11%  Similarity=0.144  Sum_probs=99.2

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChh--hHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCC------H
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFD--GAEEYFNRSIRVDPENASLYVHRAMLMLQARGN------V   79 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------~   79 (116)
                      ++++++++.+.+++..+|.+..+|...+.+....+.++  ++++.+.+++..+|.+..+|..++.+... .+.      +
T Consensus       124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~-l~~~~~~~~~  202 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS-KKHLATDNTI  202 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS-SGGGCCHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-ccccchhhhH
Confidence            67899999999999999999999999999999999999  99999999999999999999999999655 676      9


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         80 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      +++++.+.+++..+|++..+|..++.++...|+..
T Consensus       203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~  237 (306)
T 3dra_A          203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSI  237 (306)
T ss_dssp             HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCCh
Confidence            99999999999999999999999999998887643

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.55  E-value=2.2e-13  Score=67.62  Aligned_cols=84  Identities=15%  Similarity=0.262  Sum_probs=72.3

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhH-HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVE-ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      +...|++++|+..+++++..+|+++. ++..+|.++...|++++|+..|++++..+|++..++..         +.+.++
T Consensus        10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---------~~~~~a   80 (99)
T 2kc7_A           10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR---------KMVMDI   80 (99)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH---------HHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH---------HHHHHH
Confidence            45689999999999999999999999 99999999999999999999999999999999887743         445566


Q ss_pred             HHHHHHHHhcCCCc
Q psy12719         83 IKLIEKAISIDKSC   96 (116)
Q Consensus        83 ~~~~~~~~~~~~~~   96 (116)
                      ...+.+++..+|++
T Consensus        81 ~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           81 LNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHCCTTHHHHCC
T ss_pred             HHHHHHHhccCccc
Confidence            77777766666554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.54  E-value=4.2e-13  Score=79.21  Aligned_cols=103  Identities=8%  Similarity=0.026  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc--ChhhHHHHHHHHhccCCCCHHHHHHHHHHH----HHhc---CCHHH
Q psy12719         11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE--DFDGAEEYFNRSIRVDPENASLYVHRAMLM----LQAR---GNVDE   81 (116)
Q Consensus        11 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~---~~~~~   81 (116)
                      ++|+..+.+++..+|++..+|...+.+....+  ++++++..+..++..+|++..+|+.++.++    .. .   +++++
T Consensus        50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~-l~~~~~~~~  128 (306)
T 3dra_A           50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL-NNNDFDPYR  128 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-TTTCCCTHH
T ss_pred             HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh-ccccCCHHH
Confidence            57888888888888888888888888887777  888888888888888888888888888775    33 4   67788


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         82 AIKLIEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      ++..+.++++.+|.+..+|...+.+....|.++
T Consensus       129 EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~  161 (306)
T 3dra_A          129 EFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHN  161 (306)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccC
Confidence            888888888888888888888888777776654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.54  E-value=5.1e-13  Score=70.94  Aligned_cols=104  Identities=14%  Similarity=0.046  Sum_probs=91.1

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc---ChhhHHHHHHHHhccC-C-CCHHHHHHHHHHHHHhcCCH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE---DFDGAEEYFNRSIRVD-P-ENASLYVHRAMLMLQARGNV   79 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~-~-~~~~~~~~~~~~~~~~~~~~   79 (116)
                      ........+.+.|.+.+..+|.+.++.+.+|.++.+.+   +.++++..++..++.+ | +...++|++|..+++ .++|
T Consensus         9 l~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-l~~Y   87 (152)
T 1pc2_A            9 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEY   87 (152)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TSCH
T ss_pred             CCHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-ccCH
Confidence            34567788889999999988999999999999999977   7789999999999998 7 568899999999988 9999


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719         80 DEAIKLIEKAISIDKSCMFAYETLGTIEVQ  109 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (116)
                      ++|.++++++++.+|++..+......+...
T Consensus        88 ~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~  117 (152)
T 1pc2_A           88 EKALKYVRGLLQTEPQNNQAKELERLIDKA  117 (152)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            999999999999999998877766555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.54  E-value=2e-13  Score=86.45  Aligned_cols=100  Identities=15%  Similarity=0.254  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcC----------hhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcC--C
Q psy12719         11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED----------FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG--N   78 (116)
Q Consensus        11 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~   78 (116)
                      ++|++.+.+++..+|++..+|...+.+....++          +++++..+.+++..+|++..+|+.++.++.. .+  +
T Consensus        46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~-l~~~~  124 (567)
T 1dce_A           46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LPEPN  124 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CSSCC
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccccc
Confidence            344555555555555555555555555555544          5555555555555555555555555555333 45  4


Q ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q psy12719         79 VDEAIKLIEKAISIDKSCMFAYETLGTIEVQRT  111 (116)
Q Consensus        79 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  111 (116)
                      ++++++.+.++++.+|.+..+|...+.+....|
T Consensus       125 ~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~  157 (567)
T 1dce_A          125 WARELELCARFLEADERNFHCWDYRRFVAAQAA  157 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhhccccccHHHHHHHHHHHcC
Confidence            455555555555555555555555555554444

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.54  E-value=2.5e-13  Score=78.51  Aligned_cols=97  Identities=11%  Similarity=0.217  Sum_probs=49.8

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHh----hcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh---cCCH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA---RGNV   79 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~   79 (116)
                      .+++++|+.+|+++++..  ++.++..+|.++..    .+++++|+.+|++++..+  ++.+++.+|.++...   .+++
T Consensus        55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~  130 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDF  130 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCH
T ss_pred             CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCH
Confidence            455555555555555543  44555555555555    555555555555555442  455555555553320   3555


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719         80 DEAIKLIEKAISIDKSCMFAYETLGTIEVQ  109 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (116)
                      ++|+..++++++..  ++.++..+|.++..
T Consensus       131 ~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  158 (273)
T 1ouv_A          131 KKAVEYFTKACDLN--DGDGCTILGSLYDA  158 (273)
T ss_dssp             HHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence            55555555555543  33444555555544

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.53  E-value=3e-14  Score=88.71  Aligned_cols=111  Identities=14%  Similarity=0.138  Sum_probs=90.0

Q ss_pred             ccchhcHHHHHHHHHHHHhhC-----CCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhcc-----CCCC---HHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTH-----SNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRV-----DPEN---ASLYVH   67 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~   67 (116)
                      +..+|+|++|+..++++++..     |++   ..++.++|.+|..+|+|++|..++++++.+     .|++   ...+.+
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            346899999999999999763     444   567899999999999999999999999865     3444   557899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhc-----CCCc---HHHHHHHHHHHHhhccccc
Q psy12719         68 RAMLMLQARGNVDEAIKLIEKAISI-----DKSC---MFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        68 ~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~~~~~  115 (116)
                      +|.+|.. +|++++|+..+++++.+     .|+.   ......++.++..++.+++
T Consensus       399 La~~~~~-~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~  453 (490)
T 3n71_A          399 AGLTNWH-AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ  453 (490)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888 89999999999999975     4444   5566788888877776654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.53  E-value=4e-13  Score=66.31  Aligned_cols=73  Identities=12%  Similarity=0.056  Sum_probs=67.4

Q ss_pred             CCChhHHHHHHHHHHHhhcC---hhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12719         24 HSNVVEACTLFAQVLVDQED---FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM   97 (116)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~   97 (116)
                      +|+++.++..+|.+++..++   .++|...+++++..+|+++.+++.+|..++. .|+|++|+..|+++++.+|.++
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCc
Confidence            68899999999999976555   7999999999999999999999999999988 8999999999999999998853

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.53  E-value=8e-14  Score=71.09  Aligned_cols=71  Identities=14%  Similarity=0.106  Sum_probs=67.1

Q ss_pred             hhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         45 DGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        45 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .+|+..|++++..+|+++.+++.+|.++.. .|++++|+..+++++..+|+++.++..+|.++...|++++|
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A   72 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAE-HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA   72 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            468899999999999999999999999888 89999999999999999999999999999999999998764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.53  E-value=5.1e-13  Score=84.62  Aligned_cols=100  Identities=13%  Similarity=0.098  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc--ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcC-CHHHHHHHH
Q psy12719         10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE--DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG-NVDEAIKLI   86 (116)
Q Consensus        10 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~   86 (116)
                      ++++++.+++++..+|++..+|...+.+....+  +++++++.+.++++.+|++..+|..++.+... .| .++++++.+
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~-l~~~~~~el~~~  167 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-AAVAPAEELAFT  167 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHH-cCCChHHHHHHH
Confidence            899999999999999999999999999999999  67999999999999999999999999999766 78 899999999


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHhh
Q psy12719         87 EKAISIDKSCMFAYETLGTIEVQR  110 (116)
Q Consensus        87 ~~~~~~~~~~~~~~~~l~~~~~~~  110 (116)
                      .++++.+|++..+|..++.++...
T Consensus       168 ~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          168 DSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             HTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCccHHHHHHHHHHhh
Confidence            999999999999999999998875

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.53  E-value=1.5e-14  Score=77.42  Aligned_cols=72  Identities=18%  Similarity=0.145  Sum_probs=66.2

Q ss_pred             HhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719         39 VDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN----------VDEAIKLIEKAISIDKSCMFAYETLGTIEV  108 (116)
Q Consensus        39 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  108 (116)
                      .+.+.+++|+..+++++.++|+++.+|+++|.++.. .++          +++|+..|+++++++|+...+|+++|.+|.
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~-l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE-LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            356789999999999999999999999999999777 665          469999999999999999999999999999


Q ss_pred             hhc
Q psy12719        109 QRT  111 (116)
Q Consensus       109 ~~~  111 (116)
                      .+|
T Consensus        92 ~lg   94 (158)
T 1zu2_A           92 SFA   94 (158)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            886

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.53  E-value=8.3e-14  Score=78.21  Aligned_cols=99  Identities=14%  Similarity=0.090  Sum_probs=66.8

Q ss_pred             cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHh----hcChhhHHHHHHHHhccCC--CCHHHHHHHHHHHHHh---cCCH
Q psy12719          9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDP--ENASLYVHRAMLMLQA---RGNV   79 (116)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~---~~~~   79 (116)
                      ++++|+.+|+++.+  ++++.++..+|.++..    .+++++|+.+|++++...|  .++.+++++|.++...   .+++
T Consensus        68 ~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~  145 (212)
T 3rjv_A           68 DYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD  145 (212)
T ss_dssp             CHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH
T ss_pred             CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH
Confidence            67777777777643  3566667777777765    6677777777777777766  3466777777775541   3467


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhh
Q psy12719         80 DEAIKLIEKAISIDKSCMFAYETLGTIEVQR  110 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  110 (116)
                      ++|+.+++++++. |.++.++..+|.++...
T Consensus       146 ~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g  175 (212)
T 3rjv_A          146 VKASEYFKGSSSL-SRTGYAEYWAGMMFQQG  175 (212)
T ss_dssp             HHHHHHHHHHHHT-SCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHc-CCCHHHHHHHHHHHHcC
Confidence            7777777777776 66666777777776553

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.52  E-value=2.9e-13  Score=76.01  Aligned_cols=107  Identities=17%  Similarity=0.107  Sum_probs=88.7

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc----ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh---c
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE----DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA---R   76 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~   76 (116)
                      +...+++++|+.+|+++++.  +++.++..+|.++.. +    ++++|+.+|++++.  +.++.+++++|.++...   .
T Consensus        28 ~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~  102 (212)
T 3rjv_A           28 WVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGA  102 (212)
T ss_dssp             HHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSS
T ss_pred             HhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCc
Confidence            44578999999999999875  678889999999988 6    89999999999964  56888999999986531   5


Q ss_pred             CCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHh----hccccc
Q psy12719         77 GNVDEAIKLIEKAISIDK--SCMFAYETLGTIEVQ----RTFVVL  115 (116)
Q Consensus        77 ~~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~----~~~~~~  115 (116)
                      +++++|+.+++++.+..|  +.+.++..+|.++..    .+++++
T Consensus       103 ~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~  147 (212)
T 3rjv_A          103 TDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK  147 (212)
T ss_dssp             CCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence            799999999999999988  458899999999987    555543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.49  E-value=1.4e-12  Score=78.06  Aligned_cols=106  Identities=12%  Similarity=0.105  Sum_probs=98.1

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc-ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhc-C-CHHHHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE-DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR-G-NVDEAIK   84 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~-~~~~a~~   84 (116)
                      +..++|++.+.+++..+|++..+|...+.+....+ .+++++..+..++..+|++..+|..++.++.. . + +++++++
T Consensus        68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~-l~~~~~~~EL~  146 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR-ISPQDPVSEIE  146 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-HCCSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hcCCChHHHHH
Confidence            34578999999999999999999999999999999 59999999999999999999999999999766 5 7 8999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      .+.++++.+|.+..+|...+.+....|.++
T Consensus       147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             HHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999998887765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.49  E-value=1.7e-13  Score=82.61  Aligned_cols=90  Identities=13%  Similarity=0.135  Sum_probs=79.9

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCC------hhHHHHHHHHHHHhhcChhhHHHHHHHHhc-----cCCCCHHHHHHHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSN------VVEACTLFAQVLVDQEDFDGAEEYFNRSIR-----VDPENASLYVHRAML   71 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~~   71 (116)
                      ++...|++++|++.+.+++...+.      ...++.++|.++...|++++|+.++++++.     .+|..+.++..+|.+
T Consensus       191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  270 (378)
T 3q15_A          191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT  270 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence            356789999999999999987432      246889999999999999999999999999     788888999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcC
Q psy12719         72 MLQARGNVDEAIKLIEKAISID   93 (116)
Q Consensus        72 ~~~~~~~~~~a~~~~~~~~~~~   93 (116)
                      +.. .|++++|...+++++...
T Consensus       271 ~~~-~g~~~~A~~~~~~al~~~  291 (378)
T 3q15_A          271 LCK-AGQTQKAFQFIEEGLDHI  291 (378)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHC
T ss_pred             HHH-CCCHHHHHHHHHHHHHHH
Confidence            888 899999999999999874

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.47  E-value=2.7e-13  Score=81.41  Aligned_cols=110  Identities=16%  Similarity=0.064  Sum_probs=68.9

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChh------HHHHHHHHHHHhhcChhhHHHHHHHHhccC--------CCCHHHHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVV------EACTLFAQVLVDQEDFDGAEEYFNRSIRVD--------PENASLYVHRAM   70 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~   70 (116)
                      ...|++++|+..+++++...|...      .++..+|.++...|++++|+..+++++...        |....++..+|.
T Consensus        64 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  143 (373)
T 1hz4_A           64 HCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ  143 (373)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHH
Confidence            345667777777777766554332      234566777777777777777777766543        223445666777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHhhccccc
Q psy12719         71 LMLQARGNVDEAIKLIEKAISIDKS-----CMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        71 ~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~  115 (116)
                      +++. .|++++|...+.+++...+.     ...++..++.++...|++++
T Consensus       144 ~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  192 (373)
T 1hz4_A          144 LLWA-WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDN  192 (373)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHH-hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            7666 67777777777777766543     23456667777777776654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.47  E-value=3.7e-12  Score=75.85  Aligned_cols=100  Identities=13%  Similarity=0.093  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcC--hhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCC-HHHHHHHH
Q psy12719         10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED--FDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGN-VDEAIKLI   86 (116)
Q Consensus        10 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~   86 (116)
                      +++++..+..++..+|.+..+|...+.+....++  +++++.++.+++..+|.+..+|..++.+... .|. ++++++.+
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~-l~~~~~eel~~~  168 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-AAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCcCHHHHHHHH
Confidence            7899999999999999999999999999998884  8999999999999999999999999999666 788 69999999


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHhh
Q psy12719         87 EKAISIDKSCMFAYETLGTIEVQR  110 (116)
Q Consensus        87 ~~~~~~~~~~~~~~~~l~~~~~~~  110 (116)
                      .+++..+|++..+|..++.+....
T Consensus       169 ~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          169 DSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999998776

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.44  E-value=4.8e-13  Score=80.32  Aligned_cols=112  Identities=8%  Similarity=0.042  Sum_probs=93.2

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChh-----HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVV-----EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLM   72 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~   72 (116)
                      +...|++++|+..+++++...|...     .++..+|.++...|++++|...+++++...|..      ..++..+|.++
T Consensus        24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  103 (373)
T 1hz4_A           24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL  103 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            3457899999999999999887653     267889999999999999999999999876543      23477899998


Q ss_pred             HHhcCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHhhcccccC
Q psy12719         73 LQARGNVDEAIKLIEKAISID--------KSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        73 ~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .. .|++++|+..+++++...        |....++..+|.++...|++++|
T Consensus       104 ~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  154 (373)
T 1hz4_A          104 FA-QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA  154 (373)
T ss_dssp             HH-TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HH-CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHH
Confidence            87 899999999999999864        34456788899999999998764

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.43  E-value=8.1e-12  Score=65.82  Aligned_cols=101  Identities=9%  Similarity=0.092  Sum_probs=80.1

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh---cCCHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA---RGNVDEAI   83 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~   83 (116)
                      .+++++|+++|+++.+..+.  .+.  +|.++...+.+++|+.+|+++.+.  .++.+.+++|.+|...   .+++++|+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            46788999999999887633  333  888888888888899999998876  6788889999986652   47899999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHh----hccccc
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQ----RTFVVL  115 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~  115 (116)
                      ++++++.+.  .++.+..++|.++..    .+++++
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~  115 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQ  115 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHH
Confidence            999998876  667888899998887    555543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.43  E-value=7.8e-12  Score=62.87  Aligned_cols=81  Identities=21%  Similarity=0.306  Sum_probs=69.9

Q ss_pred             hhHHHHHHHHHHHhhcChhhHHHHHHHHhccC-------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q psy12719         27 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-------PENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFA   99 (116)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   99 (116)
                      ++.-.+.+|..++..++|..|+.+|+.+++..       +..+.++..+|.++++ +|+++.|+..+++++...|+++.+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHH
Confidence            34567899999999999999999999999853       3457789999999888 999999999999999999999998


Q ss_pred             HHHHHHHHH
Q psy12719        100 YETLGTIEV  108 (116)
Q Consensus       100 ~~~l~~~~~  108 (116)
                      ..+++....
T Consensus        83 ~~n~~~~~~   91 (104)
T 2v5f_A           83 NGNLKYFEY   91 (104)
T ss_dssp             HHHHHHHHH
T ss_pred             HhhHHHHHH
Confidence            888875443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.42  E-value=3.2e-12  Score=79.01  Aligned_cols=95  Identities=20%  Similarity=0.229  Sum_probs=60.7

Q ss_pred             cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhh----cChhhHHHHHHHHhccCCCCHHHHHHHHHHHH--HhcCCHHHH
Q psy12719          9 RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ----EDFDGAEEYFNRSIRVDPENASLYVHRAMLML--QARGNVDEA   82 (116)
Q Consensus         9 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~a   82 (116)
                      ++++|+.+|+++....|.....++.+|.++...    +++++|+.+|+++.   |.++.+++++|.+++  ...+++++|
T Consensus       194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A  270 (452)
T 3e4b_A          194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQM  270 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHH
Confidence            666777777777766666666666666666544    56666777776666   666666666666643  225666666


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTIEV  108 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~  108 (116)
                      +.+++++.+.  +++.+++.+|.++.
T Consensus       271 ~~~~~~Aa~~--g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          271 MKYLDNGRAA--DQPRAELLLGKLYY  294 (452)
T ss_dssp             HHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            6666666643  35566666666665

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.42  E-value=3.5e-12  Score=74.31  Aligned_cols=101  Identities=16%  Similarity=0.080  Sum_probs=85.2

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCCh--hHHHHHHHHHHHhhcChhhHHHHHHHHhccC--CC-CHHHHHHHHHHHHHhcC
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNV--VEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--PE-NASLYVHRAMLMLQARG   77 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~-~~~~~~~~~~~~~~~~~   77 (116)
                      ++.+.++|++|+..|+++....+..  ..+++.+|.++...|++++|+.+|++++...  |. .+.+++.+|.++.. +|
T Consensus       144 l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~-lG  222 (282)
T 4f3v_A          144 VYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS-QG  222 (282)
T ss_dssp             HHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH-HT
T ss_pred             HHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH-cC
Confidence            3567899999999999887653222  4589999999999999999999999998654  65 56799999999777 99


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy12719         78 NVDEAIKLIEKAISIDKSCMFAYETLGT  105 (116)
Q Consensus        78 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~  105 (116)
                      +.++|...|++++..+|+ +.++..|..
T Consensus       223 r~deA~~~l~~a~a~~P~-~~~~~aL~~  249 (282)
T 4f3v_A          223 NESAAVALLEWLQTTHPE-PKVAAALKD  249 (282)
T ss_dssp             CHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence            999999999999999999 777766643

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.41  E-value=1.8e-11  Score=72.91  Aligned_cols=104  Identities=14%  Similarity=0.249  Sum_probs=94.5

Q ss_pred             hcH-HHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcC----------hhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhc
Q psy12719          8 ERV-EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED----------FDGAEEYFNRSIRVDPENASLYVHRAMLMLQAR   76 (116)
Q Consensus         8 ~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   76 (116)
                      |++ ++|+..+.+++..+|++..+|...+.+....+.          +++++..+..++..+|.+..+|..++.++.. .
T Consensus        43 ~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~-l  121 (331)
T 3dss_A           43 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-L  121 (331)
T ss_dssp             TCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-C
T ss_pred             CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc-c
Confidence            444 479999999999999999999999999887766          6899999999999999999999999999666 7


Q ss_pred             C--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcc
Q psy12719         77 G--NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTF  112 (116)
Q Consensus        77 ~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  112 (116)
                      +  .+++++..+.++++.+|.+..+|...+.+....|.
T Consensus       122 ~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~  159 (331)
T 3dss_A          122 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV  159 (331)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc
Confidence            7  48999999999999999999999999999888776

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.39  E-value=8.1e-12  Score=74.80  Aligned_cols=105  Identities=15%  Similarity=0.116  Sum_probs=96.8

Q ss_pred             hh-cHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhh-c-ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHH---
Q psy12719          7 RE-RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ-E-DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVD---   80 (116)
Q Consensus         7 ~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---   80 (116)
                      .+ .+++++..++.++..+|++..+|...+.+.... + ++++++..+.+++..+|++..+|..++.+... .+.++   
T Consensus       101 l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~-l~~~~~~~  179 (349)
T 3q7a_A          101 LNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH-FSTLGRIS  179 (349)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH-HHHTTCCC
T ss_pred             hhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hccccccc
Confidence            34 589999999999999999999999999999887 7 89999999999999999999999999999655 67776   


Q ss_pred             -----HHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcc
Q psy12719         81 -----EAIKLIEKAISIDKSCMFAYETLGTIEVQRTF  112 (116)
Q Consensus        81 -----~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  112 (116)
                           ++++.+.++++.+|.+..+|...+.+....++
T Consensus       180 ~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          180 EAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence                 99999999999999999999999999888765

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=99.38  E-value=7.1e-12  Score=77.14  Aligned_cols=94  Identities=18%  Similarity=0.168  Sum_probs=77.7

Q ss_pred             chhcHHHHHHHHHHHHhhC-----CCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhcc-----CCCC---HHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTH-----SNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRV-----DPEN---ASLYVHRA   69 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~~~   69 (116)
                      ..|+|++|+..++++++..     |++   ..++.++|.+|..+|+|++|+.++++++.+     .|++   ...+.++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            4578999999999998753     454   457889999999999999999999999865     3444   55789999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhc-----CCCcHHHH
Q psy12719         70 MLMLQARGNVDEAIKLIEKAISI-----DKSCMFAY  100 (116)
Q Consensus        70 ~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~  100 (116)
                      .+|.. +|++++|+..+++++++     .|++|.+.
T Consensus       390 ~~~~~-qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          390 RLYMG-LENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHHh-ccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            99887 99999999999999975     56666543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=99.37  E-value=4.8e-12  Score=77.85  Aligned_cols=105  Identities=13%  Similarity=0.091  Sum_probs=83.8

Q ss_pred             cchhcHHHHHHHHHHHHhhC-----CCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhcc-----CCCC---HHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTH-----SNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRV-----DPEN---ASLYVHR   68 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~~   68 (116)
                      ..+|+|++|++.++++++..     |++   ..++.++|.+|..+|+|++|+.++++++.+     .|++   ...++++
T Consensus       298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL  377 (429)
T 3qwp_A          298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV  377 (429)
T ss_dssp             HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence            45789999999999999763     444   457889999999999999999999999865     3444   4568999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhc-----CCCcH---HHHHHHHHHHHhh
Q psy12719         69 AMLMLQARGNVDEAIKLIEKAISI-----DKSCM---FAYETLGTIEVQR  110 (116)
Q Consensus        69 ~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~  110 (116)
                      |.+|.. +|++++|+..+++++++     .|++|   .+..+++.+...+
T Consensus       378 a~~~~~-~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          378 GKLQLH-QGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            999888 99999999999999975     45554   4555666666543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.36  E-value=2.7e-12  Score=63.99  Aligned_cols=59  Identities=22%  Similarity=0.179  Sum_probs=53.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         57 VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .+|+++.+++.+|.+++. .|++++|+..++++++.+|+++.+|..+|.++...|++++|
T Consensus         2 ~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A   60 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLK-HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDA   60 (100)
T ss_dssp             ---CCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             CCccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            479999999999999888 89999999999999999999999999999999999998764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.31  E-value=5.9e-12  Score=66.84  Aligned_cols=92  Identities=14%  Similarity=0.204  Sum_probs=77.0

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCCh------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC------CHHHHHHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE------NASLYVHRAM   70 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~~~   70 (116)
                      .+...|++++|++.+++++...+..      ..++..+|.++...|++++|+.++++++...+.      ...++..+|.
T Consensus        58 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~  137 (164)
T 3ro3_A           58 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGN  137 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHH
Confidence            3456899999999999999876543      567889999999999999999999999876432      2557889999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12719         71 LMLQARGNVDEAIKLIEKAISIDKS   95 (116)
Q Consensus        71 ~~~~~~~~~~~a~~~~~~~~~~~~~   95 (116)
                      ++.. .|++++|...++++++....
T Consensus       138 ~~~~-~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          138 AYTA-LGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHH-HTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHH-ccCHHHHHHHHHHHHHHHHH
Confidence            9888 89999999999999876543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.31  E-value=3.8e-11  Score=74.24  Aligned_cols=92  Identities=15%  Similarity=0.149  Sum_probs=60.8

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHH-H--HhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcC-----CH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQV-L--VDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG-----NV   79 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----~~   79 (116)
                      +++++|+.+|+++.   |+++.+++.+|.+ +  ...+++++|+.+|+++...  .++.+++++|.++..  |     ++
T Consensus       231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~--G~g~~~d~  303 (452)
T 3e4b_A          231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYYE--GKWVPADA  303 (452)
T ss_dssp             CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH--CSSSCCCH
T ss_pred             CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc--CCCCCCCH
Confidence            46677777777765   6667777777776 3  4566777777777776644  366667777776543  4     67


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719         80 DEAIKLIEKAISIDKSCMFAYETLGTIEVQ  109 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (116)
                      ++|+.+|+++.   ++++.+++++|.+|..
T Consensus       304 ~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          304 KAAEAHFEKAV---GREVAADYYLGQIYRR  330 (452)
T ss_dssp             HHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence            77777777666   6666667777766654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.31  E-value=2.8e-11  Score=71.41  Aligned_cols=109  Identities=10%  Similarity=0.083  Sum_probs=81.2

Q ss_pred             ccchhcHHHHHHHHHHHHhhCC--ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC------CHHHHHHHHHHHHHh
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHS--NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE------NASLYVHRAMLMLQA   75 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~~~~~~~~   75 (116)
                      +...|++++|++.+.+.+..+|  ++.++....+.++...|+.+.|.+.++++.+.+|+      .......-+++.+. 
T Consensus       110 ~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~-  188 (310)
T 3mv2_B          110 QAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFA-  188 (310)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHH-
Confidence            3456889999999999888886  77888888899999999999999999988888883      23333333444554 


Q ss_pred             cC--CHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHhhcccccC
Q psy12719         76 RG--NVDEAIKLIEKAISIDKS--CMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        76 ~~--~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .|  ++.+|...|+++.+..|+  .+..+.+   ++..+|++++|
T Consensus       189 ~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eA  230 (310)
T 3mv2_B          189 TNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEA  230 (310)
T ss_dssp             HTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHH
T ss_pred             hCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHH
Confidence            45  889999999998888886  3333333   78888887764

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.29  E-value=1.1e-10  Score=72.66  Aligned_cols=96  Identities=16%  Similarity=0.154  Sum_probs=44.7

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc---ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh---cCCHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE---DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA---RGNVDE   81 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~   81 (116)
                      +++++|+.+|+++++.  +++.++..+|.++...|   ++++|+.+|++++..  .++.+++.+|.++...   .+++++
T Consensus       310 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~  385 (490)
T 2xm6_A          310 KNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQ  385 (490)
T ss_dssp             CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence            3444444444444443  22334444454444433   444555555555443  3444555555553321   245555


Q ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719         82 AIKLIEKAISIDKSCMFAYETLGTIEVQ  109 (116)
Q Consensus        82 a~~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (116)
                      |+.+++++++.  +++.++..+|.++..
T Consensus       386 A~~~~~~A~~~--~~~~a~~~Lg~~y~~  411 (490)
T 2xm6_A          386 AAIWMRKAAEQ--GLSAAQVQLGEIYYY  411 (490)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHHc
Confidence            55555555443  234455555555554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.29  E-value=3.4e-10  Score=59.57  Aligned_cols=96  Identities=15%  Similarity=0.228  Sum_probs=79.8

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHh----hcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh---
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA---   75 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~---   75 (116)
                      ++...+..++|+++|+++.+.  +++.+.+.+|.+|..    .+++++|+.+|+++.+.  .++.+.+++|.+|...   
T Consensus        34 ~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~  109 (138)
T 1klx_A           34 VSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGV  109 (138)
T ss_dssp             HTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS
T ss_pred             HHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCC
Confidence            345556778899999999887  678899999999998    89999999999999987  6789999999997652   


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy12719         76 RGNVDEAIKLIEKAISIDKSCMFAYETLG  104 (116)
Q Consensus        76 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~  104 (116)
                      .+++++|+.+++++.+..  ++.+...++
T Consensus       110 ~~d~~~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A          110 VKNEKQAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             CcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence            589999999999999873  444555554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.27  E-value=7.9e-11  Score=68.59  Aligned_cols=91  Identities=11%  Similarity=0.101  Sum_probs=81.1

Q ss_pred             chhcHHHHHHHHHHHHhhCCC--hhHHHHHHHHHHHhh-----cChhhHHHHHHHHhccCCCC-HHHHHHHHHHHHHhcC
Q psy12719          6 DRERVEQSLKEFRNFVDTHSN--VVEACTLFAQVLVDQ-----EDFDGAEEYFNRSIRVDPEN-ASLYVHRAMLMLQARG   77 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~   77 (116)
                      ..+....|...++++++++|+  +..+|..+|.+|...     |+.++|..+|++++.++|+. ..+++..|..++...+
T Consensus       175 Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g  254 (301)
T 3u64_A          175 LPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN  254 (301)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred             HHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence            345678899999999999999  566999999999984     99999999999999999975 9999999998776359


Q ss_pred             CHHHHHHHHHHHHhcCCCc
Q psy12719         78 NVDEAIKLIEKAISIDKSC   96 (116)
Q Consensus        78 ~~~~a~~~~~~~~~~~~~~   96 (116)
                      +++++.+.+++++...|..
T Consensus       255 d~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          255 NRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             CHHHHHHHHHHHHHCCGGG
T ss_pred             CHHHHHHHHHHHHcCCCCC
Confidence            9999999999999988763

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.25  E-value=3.3e-10  Score=70.48  Aligned_cols=97  Identities=10%  Similarity=0.150  Sum_probs=51.0

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHh----hcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh---cCCH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA---RGNV   79 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~   79 (116)
                      .+++++|+.+|+++.+.  +++.+++.+|.+|..    .+++++|+.+|+++...  .++.+++.+|.++...   .+++
T Consensus        56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~  131 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDK  131 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCH
Confidence            34555666666665544  345555555655555    55556666666555543  3445555555554331   2455


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719         80 DEAIKLIEKAISIDKSCMFAYETLGTIEVQ  109 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (116)
                      ++|+.+++++.+.  +++.++..+|.++..
T Consensus       132 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~  159 (490)
T 2xm6_A          132 AESVKWFRLAAEQ--GRDSGQQSMGDAYFE  159 (490)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence            5555555555443  344455555555543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.24  E-value=3.4e-10  Score=68.10  Aligned_cols=109  Identities=16%  Similarity=0.173  Sum_probs=70.4

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcCh--------hhHHHHHH--HHhccCCCCHHHHHHHHHHHHHh
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDF--------DGAEEYFN--RSIRVDPENASLYVHRAMLMLQA   75 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~A~~~~~--~a~~~~~~~~~~~~~~~~~~~~~   75 (116)
                      ...++.+|+.+|+++++.+|+.+.++-.++.++.....+        ......++  .++..+|.++.++..++..++. 
T Consensus       211 ~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~-  289 (372)
T 3ly7_A          211 DDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV-  289 (372)
T ss_dssp             SHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh-
Confidence            345678999999999999999988777766666421111        00011111  1234556777777777766555 


Q ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         76 RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        76 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .|++++|+..+++++.++|+ ...+..+|.++...|++++|
T Consensus       290 ~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA  329 (372)
T 3ly7_A          290 KGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREA  329 (372)
T ss_dssp             HTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHH
Confidence            57777777777777777764 44566777777777776653

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=99.20  E-value=1.9e-09  Score=55.52  Aligned_cols=100  Identities=15%  Similarity=0.043  Sum_probs=83.7

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhh---HHHHHHHHhccC-C-CCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDG---AEEYFNRSIRVD-P-ENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---A~~~~~~a~~~~-~-~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      .......+.|.+....++.+.++.+.+|.++.+.....+   ++..++..++.+ | .....+|.+|..+++ .|+|++|
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk-lg~Y~~A   93 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-hhhHHHH
Confidence            345667778888888888889999999999998776665   999999999887 5 567789999999998 9999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTIEV  108 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~  108 (116)
                      .++++.+++..|++..+......+..
T Consensus        94 ~~~~~~lL~~eP~n~QA~~Lk~~i~~  119 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNNQAKELERLIDK  119 (126)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999877666555543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.16  E-value=1e-09  Score=64.84  Aligned_cols=106  Identities=14%  Similarity=0.065  Sum_probs=82.6

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCC------hhHHHHHHHHHHHhhc--ChhhHHHHHHHHhccCCC--CHHHHHHHHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSN------VVEACTLFAQVLVDQE--DFDGAEEYFNRSIRVDPE--NASLYVHRAMLM   72 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~   72 (116)
                      ++..+|+.+.|.+.++++.+.+|+      ...+...-+.+....|  ++++|...|+++....|+  +...+++   ++
T Consensus       145 i~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~  221 (310)
T 3mv2_B          145 VALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LH  221 (310)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HH
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HH
Confidence            356789999999999999999983      2333333354455556  999999999999988887  3344444   66


Q ss_pred             HHhcCCHHHHHHHHHHHHhc----------CCCcHHHHHHHHHHHHhhcc
Q psy12719         73 LQARGNVDEAIKLIEKAISI----------DKSCMFAYETLGTIEVQRTF  112 (116)
Q Consensus        73 ~~~~~~~~~a~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~  112 (116)
                      .. +|++++|.+.++.+++.          +|+++.++.++..+....|+
T Consensus       222 ~~-~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk  270 (310)
T 3mv2_B          222 LQ-QRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL  270 (310)
T ss_dssp             HH-HTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred             HH-cCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence            67 89999999999987776          48899999999888887775

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.14  E-value=3e-10  Score=69.29  Aligned_cols=55  Identities=13%  Similarity=0.143  Sum_probs=44.3

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChh-----------------HHHHHHHHHHHhhcChhhHHHHHHHHhccCC
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVV-----------------EACTLFAQVLVDQEDFDGAEEYFNRSIRVDP   59 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~   59 (116)
                      .+.|+|++|++.|.++++..|...                 .++..+|.+|...|++++|.+.+.+++...+
T Consensus        15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q           15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            356889999999999998887643                 2577899999999999999999888776543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=99.13  E-value=5.7e-10  Score=55.98  Aligned_cols=67  Identities=12%  Similarity=0.065  Sum_probs=59.7

Q ss_pred             ccchhcHHHHHHHHHHHHhhC-------CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTH-------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM   70 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   70 (116)
                      +...++|..|+.+|++++...       +...+++..+|.++.+.|+++.|+..++++++.+|++..+..+++.
T Consensus        15 ~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~   88 (104)
T 2v5f_A           15 AYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY   88 (104)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHH
Confidence            456789999999999999864       3457899999999999999999999999999999999999888873

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.03  E-value=1.9e-09  Score=53.03  Aligned_cols=53  Identities=11%  Similarity=0.013  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH
Q psy12719         10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA   62 (116)
Q Consensus        10 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~   62 (116)
                      .++|...++++++.+|+++.+++.+|..++..|+|++|+..+++++..+|.++
T Consensus        25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A           25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            68999999999999999999999999999999999999999999999999843

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.01  E-value=1.2e-08  Score=66.17  Aligned_cols=105  Identities=10%  Similarity=-0.035  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHH-HHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12719         10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAE-EYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK   88 (116)
Q Consensus        10 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~   88 (116)
                      .......|++++..+|..+++|+.++......|+.++|. ..|.+++...|.+...|...+..... .|++++|.+.|++
T Consensus       325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~-~~~~e~aR~iyek  403 (679)
T 4e6h_A          325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL-NTKIPEIETTILS  403 (679)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence            345667899999999999999999999999999999997 99999999999999999999998776 8999999999999


Q ss_pred             HHhcC-----------CC-----------cHHHHHHHHHHHHhhccccc
Q psy12719         89 AISID-----------KS-----------CMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        89 ~~~~~-----------~~-----------~~~~~~~l~~~~~~~~~~~~  115 (116)
                      ++...           |.           ...+|...+.+....|+.+.
T Consensus       404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~  452 (679)
T 4e6h_A          404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAA  452 (679)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHH
Confidence            99752           42           34578888888777776543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.00  E-value=5e-10  Score=68.94  Aligned_cols=74  Identities=16%  Similarity=0.132  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719         29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV  108 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  108 (116)
                      .+|..+|..++..|+|++|..+|.++        ..|..++.++.+ +|++++|++.++++     +++.+|.....++.
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~-Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv  188 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVH-LGEYQAAVDGARKA-----NSTRTWKEVCFACV  188 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------TCHHHHHHHHHT-TTCHHHHHHHHHHH-----TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHH-hccHHHHHHHHHHc-----CCchhHHHHHHHHH
Confidence            47888899999999999999999876        367889999877 89999999999988     46778888888888


Q ss_pred             hhcccccC
Q psy12719        109 QRTFVVLW  116 (116)
Q Consensus       109 ~~~~~~~a  116 (116)
                      ..|+++.|
T Consensus       189 ~~~ef~lA  196 (449)
T 1b89_A          189 DGKEFRLA  196 (449)
T ss_dssp             HTTCHHHH
T ss_pred             HcCcHHHH
Confidence            77776643

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.00  E-value=2.8e-09  Score=65.01  Aligned_cols=111  Identities=7%  Similarity=0.016  Sum_probs=83.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCC------ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC------CCCHHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHS------NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD------PENASLYVHRAML   71 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~~~~~   71 (116)
                      +...|++++|+..+.+++...+      ....++..+|.++...|++++|...+.+++...      |....++..++.+
T Consensus       105 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (434)
T 4b4t_Q          105 EQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKV  184 (434)
T ss_dssp             CSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence            3456788888888888876542      335688899999999999999999999887642      3336688999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHHhhccccc
Q psy12719         72 MLQARGNVDEAIKLIEKAISIDKSC-------MFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        72 ~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~  115 (116)
                      +.. .|++++|...+++++...+..       ...+..+|.++...+++++
T Consensus       185 ~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~  234 (434)
T 4b4t_Q          185 YHK-LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKT  234 (434)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHH
T ss_pred             HHH-hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHH
Confidence            887 899999999999998764321       3455667777766666654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.99  E-value=1.9e-09  Score=67.51  Aligned_cols=82  Identities=7%  Similarity=-0.006  Sum_probs=67.9

Q ss_pred             HHHHHHhhcChhhHHHHHHHHhcc-----CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCcH
Q psy12719         34 FAQVLVDQEDFDGAEEYFNRSIRV-----DPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISI--------DKSCM   97 (116)
Q Consensus        34 ~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~   97 (116)
                      .+..+..+|++++|+..+++++.+     .|++   ...+.++|.+|.. +|++++|+..+++++..        +|+..
T Consensus       315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a  393 (490)
T 3n71_A          315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY-LQAYEEASHYARRMVDGYMKLYHHNNAQLG  393 (490)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            344566899999999999999865     3444   5578999999877 89999999999999975        44556


Q ss_pred             HHHHHHHHHHHhhcccccC
Q psy12719         98 FAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        98 ~~~~~l~~~~~~~~~~~~a  116 (116)
                      ..+.+||.+|..+|++++|
T Consensus       394 ~~l~nLa~~~~~~G~~~eA  412 (490)
T 3n71_A          394 MAVMRAGLTNWHAGHIEVG  412 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHH
Confidence            7799999999999999875

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.98  E-value=2.1e-08  Score=60.48  Aligned_cols=76  Identities=14%  Similarity=0.063  Sum_probs=68.3

Q ss_pred             HhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12719         21 VDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF   98 (116)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   98 (116)
                      +..+|.++.++..++..+...|++++|+..+++++.++| +..++..+|.++.. .|++++|++.+.+++.++|..+.
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~-~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEM-KGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCcCh
Confidence            356688899999999999889999999999999999996 47788899999777 89999999999999999998864

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.97  E-value=9.2e-09  Score=70.84  Aligned_cols=77  Identities=13%  Similarity=0.183  Sum_probs=61.4

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE   87 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   87 (116)
                      +++++|.+.+++.     +.+.+|..+|.++...|++++|+..|.++     +++..+..++.++.+ .|+++++++.+.
T Consensus      1090 ~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~-lGkyEEAIeyL~ 1158 (1630)
T 1xi4_A         1090 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANT-SGNWEELVKYLQ 1158 (1630)
T ss_pred             hhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence            4444444444433     55789999999999999999999999775     788899999999776 899999999999


Q ss_pred             HHHhcCCC
Q psy12719         88 KAISIDKS   95 (116)
Q Consensus        88 ~~~~~~~~   95 (116)
                      .+.+..+.
T Consensus      1159 mArk~~~e 1166 (1630)
T 1xi4_A         1159 MARKKARE 1166 (1630)
T ss_pred             HHHhhccc
Confidence            88876643

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.95  E-value=7.5e-09  Score=60.44  Aligned_cols=90  Identities=10%  Similarity=-0.038  Sum_probs=72.0

Q ss_pred             CChhHHHHHHHHHHHh-----hc------ChhhHHHHHHHHhccCCC--CHHHHHHHHHHHHHhc-----CCHHHHHHHH
Q psy12719         25 SNVVEACTLFAQVLVD-----QE------DFDGAEEYFNRSIRVDPE--NASLYVHRAMLMLQAR-----GNVDEAIKLI   86 (116)
Q Consensus        25 ~~~~~~~~~~~~~~~~-----~~------~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~a~~~~   86 (116)
                      |+++++++..|.....     .+      ....|...++++++++|+  +..+|..+|..|.. .     |+.++|.+.|
T Consensus       149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~-vPp~~gGd~ekA~~~f  227 (301)
T 3u64_A          149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAA-APESFGGGMEKAHTAF  227 (301)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH-SCTTTTCCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHh-CCCccCCCHHHHHHHH
Confidence            5556666666655432     13      356889999999999999  67799999999776 4     9999999999


Q ss_pred             HHHHhcCCCc-HHHHHHHHHHHHhh-ccccc
Q psy12719         87 EKAISIDKSC-MFAYETLGTIEVQR-TFVVL  115 (116)
Q Consensus        87 ~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~  115 (116)
                      +++++++|+. ..+++..|..+... |+.++
T Consensus       228 erAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          228 EHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            9999999975 99999999988774 76654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.92  E-value=7.5e-09  Score=55.06  Aligned_cols=65  Identities=8%  Similarity=0.185  Sum_probs=58.2

Q ss_pred             hhcHHHHHHHHHHHHhhC-C-ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTH-S-NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML   71 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   71 (116)
                      ..+.++++..++..++.+ | ...++++.+|..+++.++|++|+.+++++++++|++..+......+
T Consensus        48 ~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           48 NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            457889999999999998 7 5688999999999999999999999999999999998887665544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.90  E-value=2.4e-09  Score=66.06  Aligned_cols=77  Identities=13%  Similarity=0.002  Sum_probs=64.5

Q ss_pred             HhhcChhhHHHHHHHHhcc-----CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCcHHHHHH
Q psy12719         39 VDQEDFDGAEEYFNRSIRV-----DPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISI--------DKSCMFAYET  102 (116)
Q Consensus        39 ~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~  102 (116)
                      ...|+|++|+..+++++.+     .|++   ...+.++|.+|.. +|++++|+.++++++..        +|+....+.+
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  387 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK  387 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            3568899999999999874     4555   4568899999877 99999999999999975        4455677999


Q ss_pred             HHHHHHhhcccccC
Q psy12719        103 LGTIEVQRTFVVLW  116 (116)
Q Consensus       103 l~~~~~~~~~~~~a  116 (116)
                      +|.+|..+|++++|
T Consensus       388 La~~~~~qg~~~eA  401 (433)
T 3qww_A          388 LGRLYMGLENKAAG  401 (433)
T ss_dssp             HHHHHHHTTCHHHH
T ss_pred             HHHHHHhccCHHHH
Confidence            99999999999875

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.90  E-value=2.3e-08  Score=68.93  Aligned_cols=98  Identities=9%  Similarity=0.045  Sum_probs=66.6

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC----------------------
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----------------------   61 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----------------------   61 (116)
                      +...|++++|++.|.++     +++..+...|.++.+.|++++|++++..+.+..+..                      
T Consensus      1115 ql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A         1115 QLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred             HHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH
Confidence            45678888999888775     667788888999999999999999988877655332                      


Q ss_pred             -----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         62 -----ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        62 -----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                           ...+..+|..++. .|++++|...|.++        .-|..++.++..+|++++
T Consensus      1190 I~~~n~ad~~~iGd~le~-eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~ 1239 (1630)
T 1xi4_A         1190 INGPNNAHIQQVGDRCYD-EKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQA 1239 (1630)
T ss_pred             HhCCCHHHHHHHHHHHHh-cCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHH
Confidence                 1234456666555 66666666666654        245555555555555544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.86  E-value=2e-08  Score=62.02  Aligned_cols=95  Identities=17%  Similarity=0.191  Sum_probs=62.5

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      ...|++++|++.+.++     +++.+|...+.++...|+++.|..+... +...|+.   ...+...|.+ .|.+++++.
T Consensus       159 ~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek-~G~~eEai~  228 (449)
T 1b89_A          159 VHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQD-RGYFEELIT  228 (449)
T ss_dssp             HTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHH-TTCHHHHHH
T ss_pred             HHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHH-CCCHHHHHH
Confidence            3455556666666555     2455555555556666666666554443 2233333   3345566555 899999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQ  109 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~  109 (116)
                      .+++++..++.....+..++.++.+
T Consensus       229 lLe~aL~le~ah~~~ftel~il~~k  253 (449)
T 1b89_A          229 MLEAALGLERAHMGMFTELAILYSK  253 (449)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHh
Confidence            9999999999999999999888764

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.78  E-value=1.2e-07  Score=61.60  Aligned_cols=108  Identities=9%  Similarity=-0.011  Sum_probs=83.0

Q ss_pred             chhcHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHhhc-ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDT-HSNVVEACTLFAQVLVDQE-DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +.|..+.|...|.++++. .+....+|...+.+....+ +++.|..+|+.+++..|+++..|...+..... .|+.+.|.
T Consensus       446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~-~~~~~~AR  524 (679)
T 4e6h_A          446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY-VNEESQVK  524 (679)
T ss_dssp             HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh-CCCHHHHH
Confidence            356778888889888877 4445667777777666654 48899999999999888888888888877555 78899999


Q ss_pred             HHHHHHHhcCC---CcHHHHHHHHHHHHhhcccc
Q psy12719         84 KLIEKAISIDK---SCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        84 ~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~  114 (116)
                      ..|++++...|   ....+|..........|+.+
T Consensus       525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~  558 (679)
T 4e6h_A          525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLN  558 (679)
T ss_dssp             HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            99999988877   35667777777777777654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.77  E-value=1.1e-07  Score=58.76  Aligned_cols=80  Identities=9%  Similarity=0.030  Sum_probs=66.0

Q ss_pred             HHHHhhcChhhHHHHHHHHhcc-----CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCcHHH
Q psy12719         36 QVLVDQEDFDGAEEYFNRSIRV-----DPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISI--------DKSCMFA   99 (116)
Q Consensus        36 ~~~~~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~   99 (116)
                      .-+..+|++++|+..+++++.+     .|++   ...+.++|.+|.. +|++++|+..+++++..        +|.....
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~-~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN-LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            3355789999999999999865     3444   4578899999877 89999999999999975        4445677


Q ss_pred             HHHHHHHHHhhcccccC
Q psy12719        100 YETLGTIEVQRTFVVLW  116 (116)
Q Consensus       100 ~~~l~~~~~~~~~~~~a  116 (116)
                      +.++|.++..+|++++|
T Consensus       374 l~nLa~~~~~~g~~~eA  390 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQA  390 (429)
T ss_dssp             HHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhcCCHHHH
Confidence            89999999999999875

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.75  E-value=6.3e-07  Score=46.46  Aligned_cols=99  Identities=7%  Similarity=-0.005  Sum_probs=75.0

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc---ChhhHHHHHHHHhccCC-CCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE---DFDGAEEYFNRSIRVDP-ENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      .+.....+.|..-. ....++.+.+.+|.++.+..   +...++..+...++.+| .....++.+|..+++ .|+|++|.
T Consensus        21 eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk-lgdY~~Ar   98 (134)
T 3o48_A           21 QQLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAK   98 (134)
T ss_dssp             HHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHH
T ss_pred             HHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH-hhhHHHHH
Confidence            34444455554433 23334678889998887655   45678999999998888 457789999999998 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEV  108 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~  108 (116)
                      ++.+.+++..|++..+......+..
T Consensus        99 ~y~d~lL~~eP~N~QA~~Lk~~Ie~  123 (134)
T 3o48_A           99 RYVDTLFEHERNNKQVGALKSMVED  123 (134)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            9999999999999877665555543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.69  E-value=2.7e-06  Score=44.62  Aligned_cols=98  Identities=7%  Similarity=0.008  Sum_probs=75.1

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcC---hhhHHHHHHHHhccCCC-CHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED---FDGAEEYFNRSIRVDPE-NASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      .+.....+.|..-.. .+.+.++.+++|.++.+...   ..+++..++..++..|. ....+|.+|..+++ +|+|++|.
T Consensus        20 eeL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk-l~~Y~~Ar   97 (144)
T 1y8m_A           20 QQLEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAK   97 (144)
T ss_dssp             HHHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT-TTCHHHHH
T ss_pred             HHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH-hhhHHHHH
Confidence            344445555554322 34567888999998887654   56789999999998884 56789999999888 99999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHH
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIE  107 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~  107 (116)
                      ++.+.+++..|++..+......+.
T Consensus        98 ~y~d~lL~~eP~n~QA~~Lk~~Ie  121 (144)
T 1y8m_A           98 RYVDTLFEHERNNKQVGALKSMVE  121 (144)
T ss_dssp             HHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHH
Confidence            999999999999977666554444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.61  E-value=3.4e-07  Score=48.47  Aligned_cols=87  Identities=17%  Similarity=0.219  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHhhCCCh--------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719         11 EQSLKEFRNFVDTHSNV--------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus        11 ~~A~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      ++-++.|++++..-|..        ...|..++.. ...++.++|...|+.+++.....+.+|...|....+ +|+...|
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiR-qgnl~kA  113 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELS-QGNVKKS  113 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-cccHHHH
Confidence            77788999999887654        2356666655 567999999999999998888888899999998777 8999999


Q ss_pred             HHHHHHHHhcCCCcHHH
Q psy12719         83 IKLIEKAISIDKSCMFA   99 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~   99 (116)
                      .+.+.+++...|.....
T Consensus       114 RkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A          114 KQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             HHHHHHHHHTTCBCHHH
T ss_pred             HHHHHHHhccCCCcHHH
Confidence            99999999999886554

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.60  E-value=8.9e-07  Score=47.63  Aligned_cols=100  Identities=8%  Similarity=0.016  Sum_probs=73.6

Q ss_pred             chhcHHHHHHHHHHHHhhCCChh---------HHHHHHHHHHHhhcChhhHHHHHHHHhccC---CCC------------
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVV---------EACTLFAQVLVDQEDFDGAEEYFNRSIRVD---PEN------------   61 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~------------   61 (116)
                      +.+.|+.|+-....++....+++         .+...+|++++..++|..|...|++++...   ++.            
T Consensus        32 d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss  111 (167)
T 3ffl_A           32 AAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSAS  111 (167)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------------
T ss_pred             HhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCC
Confidence            45778888888888665543322         378899999999999999999999986431   111            


Q ss_pred             ----------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy12719         62 ----------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE  107 (116)
Q Consensus        62 ----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  107 (116)
                                .++.+.++.|+.. .+++++|+..++.. ......+.+-..||+.|
T Consensus       112 ~p~s~~~~~e~Elkykia~C~~~-l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          112 TPQSQCLPSEIEVKYKLAECYTV-LKQDKDAIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             -----CCCCHHHHHHHHHHHHHH-TTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             CcccccccchHHHHHHHHHHHHH-HCCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence                      2578999999888 99999999988643 22334566777777765

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.54  E-value=3.7e-06  Score=52.91  Aligned_cols=107  Identities=7%  Similarity=0.045  Sum_probs=72.9

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHH----------------------------------------HHHhhcChh
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQ----------------------------------------VLVDQEDFD   45 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~   45 (116)
                      ..|+.++|...|++++.. |.+...|...+.                                        ...+.++.+
T Consensus       225 ~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~  303 (493)
T 2uy1_A          225 GIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLE  303 (493)
T ss_dssp             HTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHH
Confidence            456777888888888877 776544433332                                        233466778


Q ss_pred             hHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         46 GAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        46 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      .|...|.++ ...+.....|...+.+.+...++.+.|...++.+++..|+.+..|...+......|+.+
T Consensus       304 ~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~  371 (493)
T 2uy1_A          304 LFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEE  371 (493)
T ss_dssp             HHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH
Confidence            888888888 43334566676667665553346888999999998888888877777776666666544

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.49  E-value=1.6e-05  Score=50.20  Aligned_cols=110  Identities=10%  Similarity=0.058  Sum_probs=82.0

Q ss_pred             chhcHHHHHHHHHHHHhhC-CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC-CCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTH-SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-PENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      ..+..++|.+.|++..... +.+..++..+-..+.+.|++++|..++++..... +.+...|..+-..+.+ .|+.++|.
T Consensus        82 ~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~-~g~~~~A~  160 (501)
T 4g26_A           82 PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR-KGDADKAY  160 (501)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             hcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH-CCCHHHHH
Confidence            3466888999998887654 2245677888888899999999999998887653 2355666667666677 89999999


Q ss_pred             HHHHHHHhcCC-CcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDK-SCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.+.+..+..- -+...+..+-..+...|+.++|
T Consensus       161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A  194 (501)
T 4g26_A          161 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKV  194 (501)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHH
Confidence            99998877532 2345688888888888887654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.48  E-value=2.4e-06  Score=44.32  Aligned_cols=66  Identities=11%  Similarity=0.130  Sum_probs=57.6

Q ss_pred             chhcHHHHHHHHHHHHhhCCC-hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSN-VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML   71 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   71 (116)
                      ...+..+++.+++..++..|. .-+.++.+|..+.+.|+|++|..+.+.+++..|.+..+......+
T Consensus        55 ~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           55 DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            455778999999999999985 477999999999999999999999999999999998877655544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.44  E-value=1.6e-06  Score=44.69  Aligned_cols=66  Identities=8%  Similarity=0.168  Sum_probs=56.1

Q ss_pred             chhcHHHHHHHHHHHHhhC-C-ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTH-S-NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML   71 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   71 (116)
                      ...+..+++.+++..++.. | ..-+..+.+|..+++.|+|++|+.+++.+++..|.+..+......+
T Consensus        50 ~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           50 YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             SHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3456677999999999887 5 4567899999999999999999999999999999998887655544

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.42  E-value=2.4e-05  Score=41.55  Aligned_cols=39  Identities=18%  Similarity=0.118  Sum_probs=19.7

Q ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         76 RGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        76 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      .++.++|.+.|+.+++.+...+.+|...|....++|+.+
T Consensus        73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~  111 (161)
T 4h7y_A           73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVK  111 (161)
T ss_dssp             HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHH
T ss_pred             hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHH
Confidence            355555555555555444444555555555555554443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.34  E-value=7.9e-06  Score=42.90  Aligned_cols=66  Identities=11%  Similarity=0.130  Sum_probs=57.0

Q ss_pred             chhcHHHHHHHHHHHHhhCCC-hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSN-VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML   71 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   71 (116)
                      ...+..+++.+++..++..|. .-+..+.+|..+.+.|+|++|..+.+.+++..|.+..+......+
T Consensus        54 ~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I  120 (144)
T 1y8m_A           54 DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  120 (144)
T ss_dssp             SHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            456678899999999998885 467899999999999999999999999999999998876655444

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=98.31  E-value=7.9e-06  Score=53.78  Aligned_cols=105  Identities=10%  Similarity=0.123  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHhhCCChhHHHHHHHHHHH---hhcChhhHHHHHHHHhc--------cCCCC----------HHHHHHH
Q psy12719         10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLV---DQEDFDGAEEYFNRSIR--------VDPEN----------ASLYVHR   68 (116)
Q Consensus        10 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~a~~--------~~~~~----------~~~~~~~   68 (116)
                      ++.|+..+++....+|..... ...+.+..   ...+--+|+....+.++        ..+.+          ...+...
T Consensus       265 ~~~a~~~le~L~~~~p~~~~~-~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q  343 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDIY-YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ  343 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence            577999999999988875432 22222221   12334456666666653        22222          2234444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         69 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        69 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +..+.. .|+++-|.+..++++...|.....|..|+.+|..+|+++.|
T Consensus       344 a~FLl~-K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~A  390 (754)
T 4gns_B          344 TNFLLN-RGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKA  390 (754)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhc-cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHH
Confidence            555555 89999999999999999999999999999999999999875

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.24  E-value=0.00012  Score=46.33  Aligned_cols=113  Identities=10%  Similarity=0.055  Sum_probs=83.5

Q ss_pred             cccchhcHHHHHHHHHHHHhhC-CChhHHHHHHHHHHHhhc---------ChhhHHHHHHHHhccC-CCCHHHHHHHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTH-SNVVEACTLFAQVLVDQE---------DFDGAEEYFNRSIRVD-PENASLYVHRAML   71 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~   71 (116)
                      .+.+.|+.++|++.|+++.... +.+...+..+-..+...+         ..+.|...|++..... +.+..++..+...
T Consensus        35 ~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~  114 (501)
T 4g26_A           35 MCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARL  114 (501)
T ss_dssp             HTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            3567899999999999998764 223455666655555443         4678999998877653 2356677777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHhhcccccC
Q psy12719         72 MLQARGNVDEAIKLIEKAISID-KSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        72 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.+ .|+.++|.+.+.+..... +-+...|..+-..+...|+.++|
T Consensus       115 ~~~-~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A  159 (501)
T 4g26_A          115 AVA-KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA  159 (501)
T ss_dssp             HHH-HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHh-cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH
Confidence            777 899999999999988753 23456788888888888887754

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.23  E-value=3.9e-05  Score=48.35  Aligned_cols=103  Identities=12%  Similarity=0.098  Sum_probs=78.8

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc-ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE-DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      +.++.+.|...|+++ ...+....+|...+.+-...+ +.+.|...|+.+++..|+.+..+...+..... .|+.+.|..
T Consensus       298 r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~-~~~~~~aR~  375 (493)
T 2uy1_A          298 KKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR-IGDEENARA  375 (493)
T ss_dssp             HHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHH
Confidence            356788999999999 433334567777777766656 69999999999999999999888888776555 899999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      .++++    +....+|..........|+.+
T Consensus       376 l~er~----~k~~~lw~~~~~fE~~~G~~~  401 (493)
T 2uy1_A          376 LFKRL----EKTSRMWDSMIEYEFMVGSME  401 (493)
T ss_dssp             HHHHS----CCBHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHH----HHHHHHHHHHHHHHHHCCCHH
Confidence            99887    345666777776666666543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.18  E-value=7.7e-06  Score=44.06  Aligned_cols=86  Identities=10%  Similarity=-0.063  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHhhcChhhHHHHHHHHhccC---CCC------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC
Q psy12719         30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVD---PEN------ASLYVHRAMLMLQARGNVDEAIKLIEKAISI------DK   94 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~   94 (116)
                      ++..-...+...+.|+.|+.....++...   |+.      ..++..+|..++. .++|.+|...|+++++.      .+
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~-~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH-DKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            45555667778999999999988876553   332      2378889999888 89999999999998764      11


Q ss_pred             -------------------CcHHHHHHHHHHHHhhcccccC
Q psy12719         95 -------------------SCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        95 -------------------~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                                         .+.++.+.++.|+...+++++|
T Consensus       101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A          101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence                               1136889999999999998764

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=98.16  E-value=6.2e-05  Score=47.52  Aligned_cols=79  Identities=16%  Similarity=0.203  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719         30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ  109 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (116)
                      .+..+|.+......+..|..+|.+|..+.|.+...+..+|.+... .|+.-+|+-+|.+++......+.+..++...+..
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~-~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc-ccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            566789999999999999999999999999999999999999777 8999999999999998877778888888877654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=97.83  E-value=0.00073  Score=39.35  Aligned_cols=60  Identities=20%  Similarity=0.284  Sum_probs=55.2

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS   63 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~   63 (116)
                      ..+.|+.++++......++.+|.+.+....+-.+++-.|+++.|..-++.+.+++|....
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            356789999999999999999999999999999999999999999999999999987643

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.75  E-value=0.00028  Score=46.70  Aligned_cols=59  Identities=14%  Similarity=0.172  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12719         30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKA   89 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   89 (116)
                      .+...+..+...|+++-|+.+.++++...|.....|+.|+.+|.. +|+++.|+-.+..+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~-l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIK-KEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH-hccHHHHHHHHhcC
Confidence            455567778889999999999999999999999999999999998 99999999887765

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.53  E-value=0.0035  Score=38.49  Aligned_cols=83  Identities=11%  Similarity=0.040  Sum_probs=66.8

Q ss_pred             hcHHHHHHHHHHHHhhCCCh--------h--------------HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNV--------V--------------EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY   65 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~--------~--------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   65 (116)
                      |+.+.|...+.+++.+..+.        .              .+...++..+...|++.+++..+..++..+|-+..++
T Consensus       129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~  208 (388)
T 2ff4_A          129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLW  208 (388)
T ss_dssp             TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            56777888888888775221        0              1233466677789999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12719         66 VHRAMLMLQARGNVDEAIKLIEKAIS   91 (116)
Q Consensus        66 ~~~~~~~~~~~~~~~~a~~~~~~~~~   91 (116)
                      ..+-.+++. .|+..+|.+.|+++..
T Consensus       209 ~~lm~al~~-~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          209 TQLITAYYL-SDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence            999999877 8999999999987754

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=97.51  E-value=0.0027  Score=37.02  Aligned_cols=60  Identities=18%  Similarity=0.254  Sum_probs=55.6

Q ss_pred             HHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH
Q psy12719         37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCM   97 (116)
Q Consensus        37 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~   97 (116)
                      ...+.|..++++......++.+|.+......+...++- .|++++|...++.+.+++|...
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv-~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCchhh
Confidence            45688999999999999999999999999999999888 8999999999999999999874

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=97.37  E-value=0.0024  Score=40.55  Aligned_cols=65  Identities=14%  Similarity=0.082  Sum_probs=56.7

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM   72 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   72 (116)
                      ..+..|..+|.++....|++...+..+|.+....|+.-+|.-+|.+++......+.+..++...+
T Consensus       166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f  230 (497)
T 1ya0_A          166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999999887666777777776663

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.05  E-value=0.0024  Score=39.72  Aligned_cols=64  Identities=16%  Similarity=0.095  Sum_probs=45.0

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC---CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE---NASLYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      ..++..+|..+...|++++|.+.|.++......   -...+.....+++. .+++..+...+.++-..
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~-~~d~~~~~~~~~ka~~~  197 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF-YNDQLYVKEKLEAVNSM  197 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHh
Confidence            446777888888888888888888777654322   24566666666666 68888888888777544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.96  E-value=0.025  Score=39.26  Aligned_cols=88  Identities=6%  Similarity=-0.089  Sum_probs=62.3

Q ss_pred             ccchhcHHHHHHHHHHHHhh----CCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC-CCCHHHHHHHHHHHHHhcCC
Q psy12719          4 PGDRERVEQSLKEFRNFVDT----HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-PENASLYVHRAMLMLQARGN   78 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~   78 (116)
                      +.+.|+.++|...|......    ..-+...|..+-..+++.|++++|.+.|++..... ..+...|..+-.++++ .|+
T Consensus       137 lcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK-~G~  215 (1134)
T 3spa_A          137 CLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR-QDQ  215 (1134)
T ss_dssp             HHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-HTC
T ss_pred             HHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-CCC
Confidence            45678888898888765422    23346678888888889999999999998887643 2345556666666666 576


Q ss_pred             -HHHHHHHHHHHHhc
Q psy12719         79 -VDEAIKLIEKAISI   92 (116)
Q Consensus        79 -~~~a~~~~~~~~~~   92 (116)
                       .++|.+.+++..+.
T Consensus       216 ~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          216 DAGTIERCLEQMSQE  230 (1134)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHc
Confidence             57788888888765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.86  E-value=0.015  Score=38.43  Aligned_cols=43  Identities=9%  Similarity=0.073  Sum_probs=32.1

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRS   54 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a   54 (116)
                      .|++++|.+..+     ..++...|..+|..+...++++.|+.+|.++
T Consensus       665 ~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          665 VGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            445555554432     2355778999999999999999999999886

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.84  E-value=0.033  Score=34.24  Aligned_cols=77  Identities=12%  Similarity=-0.070  Sum_probs=60.3

Q ss_pred             HhhcChhhHHHHHHHHhccCCC--------C--------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719         39 VDQEDFDGAEEYFNRSIRVDPE--------N--------------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC   96 (116)
Q Consensus        39 ~~~~~~~~A~~~~~~a~~~~~~--------~--------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   96 (116)
                      ...|+.+.|...+.+++.+...        .              ..+...++..++. .|++++++..+..++..+|-+
T Consensus       126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~-~g~~~~a~~~l~~~~~~~P~~  204 (388)
T 2ff4_A          126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA-CGRASAVIAELEALTFEHPYR  204 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTC
T ss_pred             HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCC
Confidence            3467888999999999876421        1              0123345566566 899999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccccC
Q psy12719         97 MFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        97 ~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ..++..+..++...|+..+|
T Consensus       205 E~~~~~lm~al~~~Gr~~~A  224 (388)
T 2ff4_A          205 EPLWTQLITAYYLSDRQSDA  224 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999987654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.78  E-value=0.025  Score=34.94  Aligned_cols=89  Identities=11%  Similarity=0.045  Sum_probs=65.9

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCC------hhHHHHHHHHHHHhhcChhhHHHHHHHHhccC---CCC----HHHHHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSN------VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD---PEN----ASLYVHRA   69 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~----~~~~~~~~   69 (116)
                      .|.+.|+|.+|.+.+.+..+....      -.+++..-..+|...+++.++...+.++....   +.+    +.....-|
T Consensus       108 l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~G  187 (394)
T 3txn_A          108 LYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSG  187 (394)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhh
Confidence            356789999999999988876432      14567777888999999999999998886432   122    22344556


Q ss_pred             HHHH-HhcCCHHHHHHHHHHHHhc
Q psy12719         70 MLML-QARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        70 ~~~~-~~~~~~~~a~~~~~~~~~~   92 (116)
                      .++. . .++|..|...|-+++..
T Consensus       188 i~~l~~-~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          188 ILHAAD-ERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred             HHHHHh-ccCHHHHHHHHHHHHhc
Confidence            6655 5 89999999999998754

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=96.75  E-value=0.041  Score=38.49  Aligned_cols=95  Identities=12%  Similarity=-0.050  Sum_probs=68.1

Q ss_pred             HhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC-CC----------------------CHHHHHHHHHHHHHhcC
Q psy12719         21 VDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-PE----------------------NASLYVHRAMLMLQARG   77 (116)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~----------------------~~~~~~~~~~~~~~~~~   77 (116)
                      ....|.++...+.+|.++...|++++|..+|+++...- +.                      .+..|...... +...+
T Consensus       835 ~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~L-Fe~~~  913 (1139)
T 4fhn_B          835 IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKK-LFEES  913 (1139)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHH-HHHTS
T ss_pred             hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHH-HHHcC
Confidence            34556666677899999999999999999999874211 00                      12344555555 44489


Q ss_pred             CHHHHHHHHHHHHhcCC-CcH----HHHHHHHHHHHhhcccccC
Q psy12719         78 NVDEAIKLIEKAISIDK-SCM----FAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        78 ~~~~a~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a  116 (116)
                      .++.+++..+.+++..+ ++.    ..|..+=......|++++|
T Consensus       914 ~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A  957 (1139)
T 4fhn_B          914 AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA  957 (1139)
T ss_dssp             CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred             CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence            99999999999998754 332    2567777778888988876

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.71  E-value=0.025  Score=31.00  Aligned_cols=47  Identities=15%  Similarity=0.102  Sum_probs=38.7

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhc
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR   56 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~   56 (116)
                      .+.|+++.|.+..+..     ++...|..+|......|+++-|..+|.++-.
T Consensus        16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D   62 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS   62 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence            3568888888877654     5677899999999999999999999988643

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=96.61  E-value=0.063  Score=37.44  Aligned_cols=84  Identities=7%  Similarity=0.003  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHhcc----CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Q psy12719         29 EACTLFAQVLVDQEDFDGAEEYFNRSIRV----DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID-KSCMFAYETL  103 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l  103 (116)
                      ..+..+-..+++.|+.++|..+|....+.    ...+...|..+-..+++ .|+.++|.+.|.+..+.. .-+...|..+
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck-~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR-QGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            35778888999999999999999765432    24456677777777788 899999999999998763 2245567777


Q ss_pred             HHHHHhhccc
Q psy12719        104 GTIEVQRTFV  113 (116)
Q Consensus       104 ~~~~~~~~~~  113 (116)
                      -.++.+.|+.
T Consensus       207 I~glcK~G~~  216 (1134)
T 3spa_A          207 LQCMGRQDQD  216 (1134)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHhCCCc
Confidence            7777777764

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.52  E-value=0.019  Score=35.78  Aligned_cols=90  Identities=11%  Similarity=-0.000  Sum_probs=67.0

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh---hHHHHHHHHHHHhhcChhhHHHHHHHHhccC--CCCH----HHHHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV---VEACTLFAQVLVDQEDFDGAEEYFNRSIRVD--PENA----SLYVHRAMLMLQ   74 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~----~~~~~~~~~~~~   74 (116)
                      +.+.|++++|.+.|.++.......   .+++.....++...+++..+...+.++-...  ..++    ......|..+..
T Consensus       141 ~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~  220 (429)
T 4b4t_R          141 YAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLA  220 (429)
T ss_dssp             HHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGG
T ss_pred             HHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHH
Confidence            457799999999999988765433   5678888889999999999999999985432  1222    233444555555


Q ss_pred             hcCCHHHHHHHHHHHHhcCC
Q psy12719         75 ARGNVDEAIKLIEKAISIDK   94 (116)
Q Consensus        75 ~~~~~~~a~~~~~~~~~~~~   94 (116)
                       .++|..|...|..++....
T Consensus       221 -~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          221 -VRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             -TSCHHHHHHHHHHHHHHSC
T ss_pred             -hChHHHHHHHHHHHhccCC
Confidence             7999999999988876543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.33  E-value=0.075  Score=32.90  Aligned_cols=83  Identities=8%  Similarity=-0.053  Sum_probs=58.2

Q ss_pred             HHHHHHHhhcChhhHHHHHHHHhccCCC--C----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCc----HHH
Q psy12719         33 LFAQVLVDQEDFDGAEEYFNRSIRVDPE--N----ASLYVHRAMLMLQARGNVDEAIKLIEKAISID---KSC----MFA   99 (116)
Q Consensus        33 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~   99 (116)
                      .+|.+|+..|+|.+|...+.+..+.-..  +    ..++..-..++.. .+++.++...+.++....   +.+    ...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~-~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i  182 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA-LSNLPKARAALTSARTTANAIYCPPKVQGAL  182 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence            7899999999999999998887653221  1    3456667777777 899999999998886542   112    334


Q ss_pred             HHHHHHHHH-hhcccccC
Q psy12719        100 YETLGTIEV-QRTFVVLW  116 (116)
Q Consensus       100 ~~~l~~~~~-~~~~~~~a  116 (116)
                      ...-|..+. ..++|..|
T Consensus       183 ~~~~Gi~~l~~~rdyk~A  200 (394)
T 3txn_A          183 DLQSGILHAADERDFKTA  200 (394)
T ss_dssp             HHHHHHHHHHTTSCHHHH
T ss_pred             HHHhhHHHHHhccCHHHH
Confidence            445566666 66766543

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.10  E-value=0.068  Score=29.45  Aligned_cols=86  Identities=15%  Similarity=0.074  Sum_probs=62.4

Q ss_pred             CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------
Q psy12719         25 SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISI------------   92 (116)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------------   92 (116)
                      |..++..+.++.+++-.|++..+.-.+.     .-+.....+..+.|+.. .+++..|+..++..+.-            
T Consensus        30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~k-lKdYkkA~~~le~il~~kvd~d~~~d~~~  103 (242)
T 3kae_A           30 PCKPEYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKK-KKDYKKAIKSLESILEGKVERDPDVDARI  103 (242)
T ss_dssp             ----CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred             cCChHHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccccCccccccc
Confidence            4555667788999999999998887764     23456667777888777 89999999999999932            


Q ss_pred             -----CCCcH-HHHHHHHHHHHhhcccccC
Q psy12719         93 -----DKSCM-FAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        93 -----~~~~~-~~~~~l~~~~~~~~~~~~a  116 (116)
                           +|.+. -.+..+|.++.+.|+.++|
T Consensus       104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~Ea  133 (242)
T 3kae_A          104 QEMFVDPGDEEFFESLLGDLCTLSGYREEG  133 (242)
T ss_dssp             HTTSCCTTCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ceeeeccchHHHHHHHHHHHHHHhcCHHHh
Confidence                 33343 3566788888888887664

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.90  E-value=0.16  Score=31.94  Aligned_cols=88  Identities=7%  Similarity=0.128  Sum_probs=64.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh------hHHHHHHHHHHHhhcChhhHHHHHHHHhc---cCCCCH----HHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVDQEDFDGAEEYFNRSIR---VDPENA----SLYVHRAM   70 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~----~~~~~~~~   70 (116)
                      +...|++.+|.+.+.......-..      .+++.....++...+++..|...++++..   ..+..+    ..+...|.
T Consensus       147 ~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~  226 (445)
T 4b4t_P          147 KKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVK  226 (445)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHH
Confidence            457799999999998876432111      45777888899999999999999988632   223332    34556677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhc
Q psy12719         71 LMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        71 ~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      .+.. .++|.+|...|..++..
T Consensus       227 ~~~~-e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          227 ISLH-KREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHH-HCCHHHHHHHHHHHHHH
T ss_pred             HHHH-hhhHHHHHHHHHHHHhc
Confidence            7655 89999999999988764

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.59  E-value=0.12  Score=28.34  Aligned_cols=56  Identities=14%  Similarity=0.079  Sum_probs=45.5

Q ss_pred             hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12719         27 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAIS   91 (116)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   91 (116)
                      +++..+.++   ...|+++.|.+..+..     ++...|..+|...+. .|+++-|+++|.++-.
T Consensus         7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~-~gn~~lAe~cy~~~~D   62 (177)
T 3mkq_B            7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALA-QGNASLAEMIYQTQHS   62 (177)
T ss_dssp             CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHH-TTCHHHHHHHHHHTTC
T ss_pred             ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHH-cCChHHHHHHHHHhCC
Confidence            455556655   4789999999988765     678899999999888 8999999999987643

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.45  E-value=0.28  Score=31.61  Aligned_cols=68  Identities=12%  Similarity=0.112  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHhccCC--CC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP--EN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC   96 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   96 (116)
                      ...+..+-..|...+.++.|.....++.-...  .+   ...++.+|.++.. .++|.+|.+.+..|+...|.+
T Consensus       231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~-q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAI-QLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTSSCSCS
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCcc
Confidence            44677788889999999999999999852211  11   4567788999777 899999999999999987754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.07  E-value=0.11  Score=34.50  Aligned_cols=47  Identities=19%  Similarity=0.116  Sum_probs=36.9

Q ss_pred             HHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12719         38 LVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAI   90 (116)
Q Consensus        38 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   90 (116)
                      ....|+++.|.+..+     ..++...|..+|..+.+ .++++.|+++|.++-
T Consensus       662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~-~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQ-RFNFKLAIEAFTNAH  708 (814)
T ss_dssp             HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHT
T ss_pred             hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHH-cCCHHHHHHHHHHcc
Confidence            345677777776653     23577899999999888 899999999998863

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=94.12  E-value=0.7  Score=30.48  Aligned_cols=79  Identities=15%  Similarity=0.161  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12719         11 EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAI   90 (116)
Q Consensus        11 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   90 (116)
                      .++...+.+.....+++.. .-.++....+.|+++.|..++.++-...+......|-+|..+.. .|+.++|...|.++.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~-~g~~~~a~~~~~~~a  346 (618)
T 1qsa_A          269 DEQAKWRDDAIMRSQSTSL-IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLE-RGREAEAKEILHQLM  346 (618)
T ss_dssp             HHHHHHHHHHHHTCCCHHH-HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHhccccCCChHH-HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHH-cCCHHHHHHHHHHHh
Confidence            3455555554443333322 22333344567888888888877655444556667777777555 788888888888876


Q ss_pred             h
Q psy12719         91 S   91 (116)
Q Consensus        91 ~   91 (116)
                      .
T Consensus       347 ~  347 (618)
T 1qsa_A          347 Q  347 (618)
T ss_dssp             T
T ss_pred             c
Confidence            5

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.20  E-value=0.96  Score=28.49  Aligned_cols=86  Identities=12%  Similarity=0.136  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHhcc----CCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCc---
Q psy12719         29 EACTLFAQVLVDQEDFDGAEEYFNRSIRV----DPEN--ASLYVHRAMLMLQARGNVDEAIKLIEKAIS---IDKSC---   96 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~---   96 (116)
                      .....++.++...|++.+|...+.....-    .+..  ...+.....+++. .+++.+|...+.++..   ..+..   
T Consensus       138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~-~~d~~~a~~~~~ki~~~~~~~~~~~~l  216 (445)
T 4b4t_P          138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL-KGDYSQATVLSRKILKKTFKNPKYESL  216 (445)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence            35578899999999999999999887532    1111  4567777777777 8999999999988742   12222   


Q ss_pred             -HHHHHHHHHHHHhhccccc
Q psy12719         97 -MFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        97 -~~~~~~l~~~~~~~~~~~~  115 (116)
                       ...+...|.++...++|.+
T Consensus       217 k~~~~~~~~~~~~~e~~y~~  236 (445)
T 4b4t_P          217 KLEYYNLLVKISLHKREYLE  236 (445)
T ss_dssp             HHHHHHHHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHH
Confidence             2345566666666666543

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=93.18  E-value=0.44  Score=26.69  Aligned_cols=32  Identities=19%  Similarity=0.172  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHhhcChhhHHHHHHHHhccCCCC
Q psy12719         30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN   61 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~   61 (116)
                      ..+.+|.+++..++|.+|.+.+..|++..|..
T Consensus        16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~   47 (203)
T 3t5x_A           16 YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS   47 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence            44556666666666666666666666665544

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=93.17  E-value=0.99  Score=28.65  Aligned_cols=89  Identities=7%  Similarity=-0.024  Sum_probs=62.2

Q ss_pred             hhcHHHHHHHHHHHHhhCCCh-------h---H------HHHHHHHHHHhhcChhhHHHHHHHHhccC--------CCC-
Q psy12719          7 RERVEQSLKEFRNFVDTHSNV-------V---E------ACTLFAQVLVDQEDFDGAEEYFNRSIRVD--------PEN-   61 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~-------~---~------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~-   61 (116)
                      ....+++...+.++...+-.+       .   .      ....+-.+|++.++..-+...++..-...        |.+ 
T Consensus       139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q  218 (455)
T 3t5v_B          139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQ  218 (455)
T ss_dssp             THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccc
Confidence            345677777777777664211       0   1      23345578889999999988886543322        211 


Q ss_pred             -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCc
Q psy12719         62 -ASLYVHRAMLMLQARGNVDEAIKLIEKAISI-DKSC   96 (116)
Q Consensus        62 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~   96 (116)
                       ....|.+|..++. .++|.+|.+.+..|+.. .|..
T Consensus       219 ~v~Y~YYlGr~~~~-~~~y~~A~~~L~~A~~~lcp~~  254 (455)
T 3t5v_B          219 QIEYRYLLGRYYLL-NSQVHNAFVQFNEAFQSLLNLP  254 (455)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHCC
T ss_pred             eEeeeHHHHHHHHH-HccHHHHHHHHHHHHHhcCCcc
Confidence             4568889999887 89999999999999998 6643

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=92.85  E-value=0.66  Score=25.70  Aligned_cols=86  Identities=13%  Similarity=0.091  Sum_probs=59.3

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhc--c--C-------------CCCHHH-HHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR--V--D-------------PENASL-YVHR   68 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~--~-------------~~~~~~-~~~~   68 (116)
                      .|+|.+++-.+..     -+.....+.-+.++...+++..|+..+...+.  .  +             |.+... +..+
T Consensus        46 ngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~  120 (242)
T 3kae_A           46 NGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLL  120 (242)
T ss_dssp             TTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHH
T ss_pred             cchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHH
Confidence            3555555444322     23344556677888999999999999999982  2  2             333344 4556


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12719         69 AMLMLQARGNVDEAIKLIEKAISIDKSCMF   98 (116)
Q Consensus        69 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   98 (116)
                      |.++-+ .|+.++|+..+.......|-.+.
T Consensus       121 a~lltq-~g~r~EaI~y~~~Sf~~~~lf~~  149 (242)
T 3kae_A          121 GDLCTL-SGYREEGIGHYVRSFGKSFLFSP  149 (242)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHH-hcCHHHhhhHhhhhcCCccccch
Confidence            777555 89999999999999988776543

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=92.76  E-value=1.4  Score=29.16  Aligned_cols=106  Identities=9%  Similarity=-0.023  Sum_probs=58.3

Q ss_pred             hcHHHHHHHHHHHHhhCCCh-hH---HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNV-VE---ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      .+.+.|...+.......+-+ ..   .+..++.-....+...++..++.+.....++....-...+. .++ .|++..+.
T Consensus       228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~-Alr-~~d~~~a~  305 (618)
T 1qsa_A          228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALG-TGDRRGLN  305 (618)
T ss_dssp             HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHH-HTCHHHHH
T ss_pred             cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHH-HHH-CCCHHHHH
Confidence            35677777777665433222 11   22233333334443456666666655444333333333333 355 58888888


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      ..+...-...+..+...+-+|.++...|+.++
T Consensus       306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~  337 (618)
T 1qsa_A          306 TWLARLPMEAKEKDEWRYWQADLLLERGREAE  337 (618)
T ss_dssp             HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHccccccccHhHHHHHHHHHHHcCCHHH
Confidence            88866544333456667777887777776554

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.44  E-value=0.19  Score=32.34  Aligned_cols=55  Identities=18%  Similarity=0.232  Sum_probs=43.3

Q ss_pred             cchhcHHHHHHHHHHHHhhCCCh-------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNV-------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN   61 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~   61 (116)
                      ...+.++.|.....++.  .|.+       ...++.+|.++.-+++|.+|.+++..|++..|.+
T Consensus       242 L~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          242 LNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             HccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            34567788888888874  4432       3466778999999999999999999999988754

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.27  E-value=1.1  Score=31.73  Aligned_cols=108  Identities=7%  Similarity=-0.048  Sum_probs=70.5

Q ss_pred             cccchhcHHHHHHHHHHHHhhC-C----------------------ChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCC
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTH-S----------------------NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDP   59 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~-~----------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~   59 (116)
                      ++...|++++|.++|.++.... +                      ..+..+.....++...+.++.+++..+.|+...+
T Consensus       851 ~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~  930 (1139)
T 4fhn_B          851 IYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE  930 (1139)
T ss_dssp             HHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCC
T ss_pred             HHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            3456789999999998874211 0                      0123455667778889999999999999998654


Q ss_pred             C-CH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcc
Q psy12719         60 E-NA----SLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTF  112 (116)
Q Consensus        60 ~-~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  112 (116)
                      . +.    ..|.++-..++. .++|++|...+...-... ....++..+-...+..|.
T Consensus       931 ~~~~~~~~~l~~~iFk~~L~-l~~ye~Ay~aL~~~pd~~-~r~~cLr~LV~~lce~~~  986 (1139)
T 4fhn_B          931 TDDEDLSIAITHETLKTACA-AGKFDAAHVALMVLSTTP-LKKSCLLDFVNQLTKQGK  986 (1139)
T ss_dssp             SCCHHHHHHHHHHHHHHHHH-HCCSGGGGHHHHHHHHSS-SCHHHHHHHHHHHHHHCC
T ss_pred             CCChhhHHHHHHHHHHHHHh-hCCHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHhCCC
Confidence            3 32    256777777777 899999988885443222 223445555444444443

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=92.09  E-value=0.74  Score=24.52  Aligned_cols=57  Identities=25%  Similarity=0.214  Sum_probs=46.1

Q ss_pred             HHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12719         37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK   94 (116)
Q Consensus        37 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   94 (116)
                      ....+|+-+.-.+.+...+...+-++..++.+|.+|-+ .|+..++.+.+.+|.+..-
T Consensus       100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~K-lg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A          100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRR-VGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHH-hcchhhHHHHHHHHHHhhh
Confidence            44578888888888888777788889999999999766 8999999999999987643

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=91.18  E-value=0.6  Score=21.64  Aligned_cols=31  Identities=16%  Similarity=0.274  Sum_probs=20.4

Q ss_pred             HHHHHHHhhcChhhHHHHHHHHhccCCCCHH
Q psy12719         33 LFAQVLVDQEDFDGAEEYFNRSIRVDPENAS   63 (116)
Q Consensus        33 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~   63 (116)
                      .+|..+...|++++|..+|-+|+...|+-..
T Consensus        22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~   52 (73)
T 3ax2_A           22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ   52 (73)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence            4566666667777777777777766666544

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=90.51  E-value=1.4  Score=24.67  Aligned_cols=34  Identities=6%  Similarity=-0.053  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q psy12719         62 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSC   96 (116)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   96 (116)
                      ....+.+|.+++. .+++.+|.+.+..|+...|..
T Consensus        14 v~Y~YYlGr~~~~-~~~y~~A~~~L~~A~~~~~~~   47 (203)
T 3t5x_A           14 VTYKYYVGRKAMF-DSDFKQAEEYLSFAFEHCHRS   47 (203)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHH-HhCHHHHHHHHHHHHHHCCHh
Confidence            4467889999887 899999999999999998765

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=90.07  E-value=3.6  Score=28.73  Aligned_cols=79  Identities=15%  Similarity=0.072  Sum_probs=56.4

Q ss_pred             HHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccC-C--------------------CC--HHHHHHHHHHHHH
Q psy12719         18 RNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVD-P--------------------EN--ASLYVHRAMLMLQ   74 (116)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~--------------------~~--~~~~~~~~~~~~~   74 (116)
                      ...+...|.++-.-+.+|.++...|++++|..+|+++-.-- +                    ..  ...|.....+ +.
T Consensus       830 ~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~L-FE  908 (950)
T 4gq2_M          830 MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKK-LF  908 (950)
T ss_dssp             HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHH-HH
T ss_pred             HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHH-HH
Confidence            34556667777777899999999999999999999875311 0                    00  1234455555 55


Q ss_pred             hcCCHHHHHHHHHHHHhcC-CCcH
Q psy12719         75 ARGNVDEAIKLIEKAISID-KSCM   97 (116)
Q Consensus        75 ~~~~~~~a~~~~~~~~~~~-~~~~   97 (116)
                      ..+.++-+++..+.|++.- ++++
T Consensus       909 ~~~a~~~vi~fA~lAI~~~~~dd~  932 (950)
T 4gq2_M          909 EESAYIDALEFSLLADASKETDDE  932 (950)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred             hcCCHHHHHHHHHHHHhhcccCCc
Confidence            5899999999999999753 4444

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=89.45  E-value=1  Score=21.87  Aligned_cols=28  Identities=11%  Similarity=0.122  Sum_probs=22.5

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHh
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSI   55 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~   55 (116)
                      +-.+...+..+...|+|++|+++.+++.
T Consensus        15 AH~~~RrAe~ll~~gkydeAIech~kAa   42 (97)
T 2crb_A           15 AHQQSRRADRLLAAGKYEEAISCHRKAT   42 (97)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence            3456678888889999999998887765

>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*

Probab=89.44  E-value=2.3  Score=28.32  Aligned_cols=50  Identities=12%  Similarity=0.091  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         64 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      .....+...+. .|+|.-|.+.+..++..+|++..+...++.++.++|...
T Consensus       451 ~~~~~a~~~~~-~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~  500 (658)
T 2cfu_A          451 RLLEQARASYA-RGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA  500 (658)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence            34556666666 799999999999999999999999999999999887543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=88.92  E-value=2.5  Score=25.43  Aligned_cols=66  Identities=12%  Similarity=0.104  Sum_probs=46.2

Q ss_pred             ChhHHHHHHHHHHHhhcChhhHHHHHHHHh----------------c---cCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12719         26 NVVEACTLFAQVLVDQEDFDGAEEYFNRSI----------------R---VDPENASLYVHRAMLMLQARGNVDEAIKLI   86 (116)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~----------------~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   86 (116)
                      ++++.+..+|..+...+++.+|..+|-..-                .   -.|.....+..++...+--.++...|...+
T Consensus       132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~  211 (312)
T 2wpv_A          132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESK  211 (312)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            568899999999999999999999885221                1   123334555556554444479999888887


Q ss_pred             HHHHh
Q psy12719         87 EKAIS   91 (116)
Q Consensus        87 ~~~~~   91 (116)
                      ....+
T Consensus       212 ~~f~~  216 (312)
T 2wpv_A          212 DIFLE  216 (312)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76653

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1

Probab=88.86  E-value=1.7  Score=23.46  Aligned_cols=61  Identities=11%  Similarity=0.111  Sum_probs=45.6

Q ss_pred             HHHHHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHH-H--HHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         31 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVH-R--AMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        31 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~-~--~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      -+..+..++..|+|-+|-++++.+-...+..      ...+.. +  |..+++ .|+...|...+.+++..
T Consensus        35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~-rgN~~GA~~ll~~Al~~  104 (161)
T 2ijq_A           35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFD-FEDDDGMRSLFRTSLQY  104 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Confidence            3566777888899999999999998876554      223333 3  334444 79999999999999874

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=87.97  E-value=2  Score=22.98  Aligned_cols=104  Identities=8%  Similarity=0.027  Sum_probs=66.7

Q ss_pred             hhcHHHHHHHHHHHHhhCCChh------------------HHHHHHHHHH--HhhcChhhHHHHHHHHhccCCCCHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVV------------------EACTLFAQVL--VDQEDFDGAEEYFNRSIRVDPENASLYV   66 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~------------------~~~~~~~~~~--~~~~~~~~A~~~~~~a~~~~~~~~~~~~   66 (116)
                      .|..++.+++..+.....|-..                  .++-.+|..+  ...|+....+.+|-+.   +..+.  +.
T Consensus        20 dG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~---n~~se--~v   94 (172)
T 1wy6_A           20 DGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN---NTLNE--HV   94 (172)
T ss_dssp             TTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT---TCCCH--HH
T ss_pred             hhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh---cchHH--HH
Confidence            4666777777777776665331                  1223344432  2567788888888643   33333  33


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         67 HRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        67 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      .++.-.+-.+|.-++-.+.+...+...+-.|..+..++.+|...|+..+
T Consensus        95 d~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~  143 (172)
T 1wy6_A           95 NKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERD  143 (172)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhh
Confidence            4444444447888888888888777777778999999999999887654

>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1

Probab=87.70  E-value=2.1  Score=23.12  Aligned_cols=53  Identities=19%  Similarity=0.071  Sum_probs=38.6

Q ss_pred             cchhcHHHHHHHHHHHHhhCCCh---hHHH------HHHHHHHHhhcChhhHHHHHHHHhcc
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNV---VEAC------TLFAQVLVDQEDFDGAEEYFNRSIRV   57 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~------~~~~~~~~~~~~~~~A~~~~~~a~~~   57 (116)
                      ++.|+|-+|-+.++..-...+..   ...+      ...|..+.+.|+...|...+.+++..
T Consensus        43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~  104 (161)
T 2ijq_A           43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY  104 (161)
T ss_dssp             HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            45689999999999998776543   2222      22344556899999999999998763

>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1

Probab=87.40  E-value=1.1  Score=21.93  Aligned_cols=32  Identities=16%  Similarity=0.259  Sum_probs=24.9

Q ss_pred             HHHHHHHHhhcChhhHHHHHHHHhccCCCCHH
Q psy12719         32 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS   63 (116)
Q Consensus        32 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~   63 (116)
                      ..+|..+...|+++.|..+|-+|+...|+-..
T Consensus        24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~   55 (95)
T 1om2_A           24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ   55 (95)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence            45788888888888898888888887776544

>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*

Probab=86.62  E-value=3  Score=24.59  Aligned_cols=49  Identities=20%  Similarity=0.407  Sum_probs=35.7

Q ss_pred             hhhHHHHHHHHhc-----c--CCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         44 FDGAEEYFNRSIR-----V--DPENAS---LYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        44 ~~~A~~~~~~a~~-----~--~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      .+.|...|+.|..     +  .|.+|.   ...+.+..|+..++++++|+...+++++.
T Consensus       168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde  226 (268)
T 3efz_A          168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA  226 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3566677777653     3  566654   45667777787899999999999998765

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}

Probab=86.20  E-value=3.6  Score=24.16  Aligned_cols=48  Identities=13%  Similarity=0.262  Sum_probs=35.5

Q ss_pred             hhHHHHHHHHhc----cCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         45 DGAEEYFNRSIR----VDPENAS---LYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        45 ~~A~~~~~~a~~----~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      +.|...|+.|..    +.|.+|.   ...+.+..|+..++++++|+...++++..
T Consensus       173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~  227 (260)
T 2npm_A          173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEM  227 (260)
T ss_dssp             HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            466777877764    4566653   45667777788899999999988888753

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=85.48  E-value=3.7  Score=23.68  Aligned_cols=47  Identities=13%  Similarity=0.223  Sum_probs=34.9

Q ss_pred             hhHHHHHHHHhc-----cCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12719         45 DGAEEYFNRSIR-----VDPENAS---LYVHRAMLMLQARGNVDEAIKLIEKAIS   91 (116)
Q Consensus        45 ~~A~~~~~~a~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~   91 (116)
                      +.|...|+.|+.     +.|.+|.   ...+.+..|+...+++++|+...++++.
T Consensus       147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd  201 (234)
T 2br9_A          147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD  201 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            466777777764     4566654   4566777778889999999998888775

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...

Probab=85.46  E-value=3.7  Score=23.70  Aligned_cols=48  Identities=19%  Similarity=0.358  Sum_probs=35.3

Q ss_pred             hhhHHHHHHHHhc-----cCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12719         44 FDGAEEYFNRSIR-----VDPENAS---LYVHRAMLMLQARGNVDEAIKLIEKAIS   91 (116)
Q Consensus        44 ~~~A~~~~~~a~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~   91 (116)
                      .+.|...|+.|..     +.|.+|.   ...+.+..|+...+++++|+...++++.
T Consensus       149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd  204 (236)
T 3iqu_A          149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD  204 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3567777877754     5567654   4566777788889999999998888765

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=84.93  E-value=4.2  Score=23.86  Aligned_cols=48  Identities=13%  Similarity=0.211  Sum_probs=35.4

Q ss_pred             hhHHHHHHHHhc-----cCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         45 DGAEEYFNRSIR-----VDPENAS---LYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        45 ~~A~~~~~~a~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      +.|...|+.|..     +.|.+|.   ...+.+..|+..++++++|+...++++..
T Consensus       152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~  207 (260)
T 1o9d_A          152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE  207 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            467777877764     4666654   45677777888899999999988887753

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=84.91  E-value=2.3  Score=20.73  Aligned_cols=29  Identities=34%  Similarity=0.331  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12719         62 ASLYVHRAMLMLQARGNVDEAIKLIEKAIS   91 (116)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   91 (116)
                      +..+-.++..++. .|+|++|+++.+++..
T Consensus        15 AH~~~RrAe~ll~-~gkydeAIech~kAa~   43 (97)
T 2crb_A           15 AHQQSRRADRLLA-AGKYEEAISCHRKATT   43 (97)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             hhHhhhHHHHHHh-cCCHHHHHHHHHHHHH
Confidence            4456678888777 8999999988777763

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=84.83  E-value=4.1  Score=23.71  Aligned_cols=47  Identities=13%  Similarity=0.321  Sum_probs=34.8

Q ss_pred             hhHHHHHHHHhc-----cCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12719         45 DGAEEYFNRSIR-----VDPENAS---LYVHRAMLMLQARGNVDEAIKLIEKAIS   91 (116)
Q Consensus        45 ~~A~~~~~~a~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~   91 (116)
                      +.|...|+.|..     +.|.+|.   ...+.+..|+..++++++|+...++++.
T Consensus       148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd  202 (248)
T 3uzd_A          148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD  202 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            566777777654     5566654   4567777788889999999998887765

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=84.32  E-value=3.9  Score=23.01  Aligned_cols=69  Identities=13%  Similarity=0.165  Sum_probs=48.5

Q ss_pred             CCChhHHHHHHHHHHHhhcChhhHHHHHHHHhc--cCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q psy12719         24 HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIR--VDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK   94 (116)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   94 (116)
                      +|....+|..++..+ ..+...++...|..+..  +....+..|...|..+.. .|++.+|.+.|+..++...
T Consensus        76 D~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~-~g~~~~A~~Vy~~GI~~~A  146 (202)
T 3esl_A           76 DPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLEN-AQFFLEAKVLLELGAENNC  146 (202)
T ss_dssp             CHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCC
Confidence            344566777777765 23445677777776654  455667777788887665 8999999999999988653

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=83.59  E-value=4.3  Score=22.86  Aligned_cols=52  Identities=12%  Similarity=0.140  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHhhC--CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC
Q psy12719         10 VEQSLKEFRNFVDTH--SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN   61 (116)
Q Consensus        10 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~   61 (116)
                      ..++.++|.......  ...+..|...|..+...|++.+|..+|+.+++..-..
T Consensus        95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P  148 (202)
T 3esl_A           95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP  148 (202)
T ss_dssp             HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred             cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence            446666666665543  4556778888888888999999999999888876443

>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}

Probab=83.54  E-value=1.9  Score=20.21  Aligned_cols=27  Identities=15%  Similarity=0.215  Sum_probs=21.0

Q ss_pred             HHHHHHHHHhhcChhhHHHHHHHHhcc
Q psy12719         31 CTLFAQVLVDQEDFDGAEEYFNRSIRV   57 (116)
Q Consensus        31 ~~~~~~~~~~~~~~~~A~~~~~~a~~~   57 (116)
                      ...+|+-+...|+|+.|+.+|+.++..
T Consensus        15 ~~k~ARe~Al~GnYdta~~yY~g~~~q   41 (78)
T 2rpa_A           15 NVKLAREYALLGNYDSAMVYYQGVLDQ   41 (78)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            346777788889999999999887643

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=83.52  E-value=9.4  Score=26.77  Aligned_cols=52  Identities=10%  Similarity=0.131  Sum_probs=40.1

Q ss_pred             HHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12719         34 FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAI   90 (116)
Q Consensus        34 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   90 (116)
                      +...+...+.++-+    +..+...|.++..-|.+|.+++. .|++++|..+|+++-
T Consensus       816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~-~ge~~~A~~~F~kAA  867 (950)
T 4gq2_M          816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLK-SKEAVKAVRCFKTTS  867 (950)
T ss_dssp             HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHH-TTCHHHHHHHHHTCC
T ss_pred             HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHh
Confidence            44455566766544    34566778888888999999998 999999999998875

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=83.32  E-value=4.7  Score=23.15  Aligned_cols=62  Identities=6%  Similarity=0.142  Sum_probs=45.4

Q ss_pred             HHHHHHHHH-----hhcChhhHHHHHHHHhcc-----CCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         31 CTLFAQVLV-----DQEDFDGAEEYFNRSIRV-----DPEN---ASLYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        31 ~~~~~~~~~-----~~~~~~~A~~~~~~a~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      +...|..|.     ..|+.+.|...|+.|..+     .|.+   .....+.+..|+..++++++|+...++++..
T Consensus       123 ~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~  197 (227)
T 2o8p_A          123 LKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI  197 (227)
T ss_dssp             HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            444566554     355677888888887653     3333   4567788888898899999999999999664

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=82.76  E-value=1.9  Score=27.39  Aligned_cols=33  Identities=15%  Similarity=0.051  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHhcc-CCCC
Q psy12719         29 EACTLFAQVLVDQEDFDGAEEYFNRSIRV-DPEN   61 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~   61 (116)
                      ...+.+|..+...++|.+|.+.+..|++. .|..
T Consensus       221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~  254 (455)
T 3t5v_B          221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP  254 (455)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence            46788999999999999999999999998 6654

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=81.90  E-value=5.9  Score=23.28  Aligned_cols=47  Identities=13%  Similarity=0.223  Sum_probs=34.7

Q ss_pred             hhHHHHHHHHhc-----cCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12719         45 DGAEEYFNRSIR-----VDPENAS---LYVHRAMLMLQARGNVDEAIKLIEKAIS   91 (116)
Q Consensus        45 ~~A~~~~~~a~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~   91 (116)
                      +.|...|+.|..     +.|.+|.   ...+.+..|+..++++++|+...++++.
T Consensus       173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd  227 (261)
T 3ubw_A          173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD  227 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            566777777754     4566654   4566777778889999999998888765

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=81.60  E-value=2.8  Score=19.39  Aligned_cols=35  Identities=11%  Similarity=0.226  Sum_probs=28.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHH
Q psy12719         66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYE  101 (116)
Q Consensus        66 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  101 (116)
                      ..+|..+.. .|+++++...+-+|+...|.-.....
T Consensus        21 V~~GE~L~~-~g~~~~~~~hf~nAl~Vc~qP~~LL~   55 (73)
T 3ax2_A           21 IQLGEELLA-QGDYEKGVDHLTNAIAVCGQPQQLLQ   55 (73)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred             HHHHHHHHH-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence            468888777 89999999999999999887554433

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=80.98  E-value=3.2  Score=19.66  Aligned_cols=18  Identities=11%  Similarity=0.206  Sum_probs=10.1

Q ss_pred             HHhhcChhhHHHHHHHHh
Q psy12719         38 LVDQEDFDGAEEYFNRSI   55 (116)
Q Consensus        38 ~~~~~~~~~A~~~~~~a~   55 (116)
                      .-..|++++|+.+|..++
T Consensus        29 ~D~~g~y~eAl~lY~~ai   46 (83)
T 2w2u_A           29 ADKEGNAEEAITNYKKAI   46 (83)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHH
Confidence            345566666666555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	116
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-14
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-07
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-09
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-06
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-08
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	5e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	2e-07
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	0.004
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	8e-07
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-06
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-04
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-06
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	6e-06
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	6e-05
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	1e-05
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	4e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.002
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.002
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	8e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-04

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.3 bits (155), Expect = 6e-14
 Identities = 20/101 (19%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
           ++  V ++   +   +       ++    A +  +Q + + A   + +++ V PE A+ +
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
            + A + LQ +G + EA+   ++AI I  +   AY  +G  
Sbjct: 343 SNLASV-LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 6e-12
 Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
           A       DF+ AE +  +  R +P+N  + +  + +       +D +      AI  + 
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSI-HFQCRRLDRSAHFSTLAIKQNP 64

Query: 95  SCMFAYETLGTI 106
               AY  LG +
Sbjct: 65  LLAEAYSNLGNV 76

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 1e-10
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 1/99 (1%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
              ++++  +   +    N        A V  +Q   D A + + R+I + P     Y +
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276

Query: 68  RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
            A   L+ +G+V EA      A+ +  +   +   L  I
Sbjct: 277 LANA-LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 3e-08
 Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
           ++  +E++++ +R  ++       A +  A VL  Q     A  ++  +IR+ P  A  Y
Sbjct: 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376

Query: 66  VHRAMLMLQARGN 78
            +     L+   +
Sbjct: 377 SNMGNT-LKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 1e-07
 Identities = 7/66 (10%), Positives = 20/66 (30%)

Query: 9  RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
            E + +          +      L + +       D +  +   +I+ +P  A  Y + 
Sbjct: 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73

Query: 69 AMLMLQ 74
            +  +
Sbjct: 74 GNVYKE 79

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 50.8 bits (121), Expect = 2e-09
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
            +  + +     A E    +I+  P++ASL      L L   G+ + A + + ++I +  
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIEL-LCIDGDFERADEQLMQSIKLFP 61

Query: 95  SCMFAYETLG 104
             +     L 
Sbjct: 62  EYLPGASQLR 71

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 42.7 bits (100), Expect = 2e-06
 Identities = 16/102 (15%), Positives = 37/102 (36%)

Query: 9   RVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR 68
           +++Q+L+     +          + F ++L    DF+ A+E   +SI++ PE        
Sbjct: 11  QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70

Query: 69  AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
             L+  A+   D A       +  +   +        + +  
Sbjct: 71  RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVS 112

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 3e-08
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 1/81 (1%)

Query: 26  NVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 85
                      +   +     AE Y+  + ++ P N   Y   A+L   ++G+    I  
Sbjct: 150 ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL-ASSKGDHLTTIFY 208

Query: 86  IEKAISIDKSCMFAYETLGTI 106
             ++I++      A   L   
Sbjct: 209 YCRSIAVKFPFPAASTNLQKA 229

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 3e-04
 Identities = 10/60 (16%), Positives = 20/60 (33%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
            R +  Q+   +R+      +  +     A +   + D      Y+ RSI V     +  
Sbjct: 164 YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAS 223

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 5e-04
 Identities = 5/60 (8%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 47  AEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           + +Y  ++  +  +     +  A  +  +R  + +     +K +  D       +    +
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPA-EVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDL 60

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 2e-07
 Identities = 12/76 (15%), Positives = 28/76 (36%)

Query: 29  EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEK 88
           +    F  VL   E  + A +    +I ++  N +++  R +L+   + ++ E +  I  
Sbjct: 44  DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA 103

Query: 89  AISIDKSCMFAYETLG 104
            I         +    
Sbjct: 104 IIEEQPKNYQVWHHRR 119

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (74), Expect = 0.004
 Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 54  SIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
            I    +   +Y +   ++ Q     + A KL   AI ++ +    +     +
Sbjct: 35  QIIYSDKFRDVYDYFRAVL-QRDERSERAFKLTRDAIELNAANYTVWHFRRVL 86

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 8e-07
 Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 1/66 (1%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDK 94
               + + D   A   F  +++ DP++   + +              AI  + + + +  
Sbjct: 26  GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTT-QAENEQELLAISALRRCLELKP 84

Query: 95  SCMFAY 100
               A 
Sbjct: 85  DNQTAL 90

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 1e-05
 Identities = 6/79 (7%), Positives = 29/79 (36%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
           E+++  +R  ++     + +        ++      A E+F  ++ +  ++         
Sbjct: 223 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA 282

Query: 71  LMLQARGNVDEAIKLIEKA 89
           +       +  A+ ++ ++
Sbjct: 283 MSENIWSTLRLALSMLGQS 301

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 1e-04
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 51  FNRSIRVDPENASLYVHRAM---LMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
           +++  + + EN      +     L     G++  A+ L E A+  D   M A++ LGT 
Sbjct: 4   YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTT 62

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 2e-04
 Identities = 11/105 (10%), Positives = 34/105 (32%), Gaps = 1/105 (0%)

Query: 2   IVPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN 61
           ++       ++++  F   +    N           L +    + A   + R++ + P  
Sbjct: 180 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239

Query: 62  ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI 106
                +   +     G   EA++   +A+++ +         G +
Sbjct: 240 IRSRYNL-GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 283

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 2e-06
 Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 33/107 (30%)

Query: 37  VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM------------------------ 72
            L     +  A   + R+I  +P  A  Y +RA+                          
Sbjct: 13  RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72

Query: 73  ---------LQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR 110
                         + DEAI  +++A S+ K     +       ++ 
Sbjct: 73  KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (83), Expect = 2e-04
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 1/87 (1%)

Query: 24  HSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI 83
               V+A     Q  ++ E +D A     R+  +  E    +       L+         
Sbjct: 68  DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-IAKKKRWN 126

Query: 84  KLIEKAISIDKSCMFAYETLGTIEVQR 110
            + E+ I  +         L   E +R
Sbjct: 127 SIEERRIHQESELHSYLTRLIAAERER 153

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 42.6 bits (98), Expect = 2e-06
 Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 29  EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLML----QARGNVDEAIK 84
           E   L AQV ++  + D AE     ++   P         A  +L      +G +  ++ 
Sbjct: 13  EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLA 72

Query: 85  LIEKAISIDKSCMFAYETL 103
           L+++   + +     +  L
Sbjct: 73  LMQQTEQMARQHDVWHYAL 91

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.1 bits (95), Expect = 6e-06
 Identities = 7/83 (8%), Positives = 23/83 (27%), Gaps = 1/83 (1%)

Query: 11  EQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAM 70
           +QS   +  ++   +  +  C L  +     +    + +        +       +    
Sbjct: 225 DQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM- 283

Query: 71  LMLQARGNVDEAIKLIEKAISID 93
             L       E ++      ++D
Sbjct: 284 RALDPLLYEKETLQYFSTLKAVD 306

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.4 bits (88), Expect = 6e-05
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
           +   +S KE +     +   +    L  + L          +YF+    VDP  A+    
Sbjct: 256 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 313

Query: 68  RAMLMLQARGNVDEAIKLIEKA 89
                L+++  ++ ++  +E A
Sbjct: 314 ---DDLRSKFLLENSVLKMEYA 332

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 1e-05
 Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 2/68 (2%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH--RAMLMLQARGNVDEAIKLIEKAISI 92
              LV  ED    E+ F         + S        ++  +   ++ + I L+E+ +  
Sbjct: 6   LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK 65

Query: 93  DKSCMFAY 100
                   
Sbjct: 66  GSKEEQRD 73

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 4e-05
 Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 6/96 (6%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
            ++  + +LK +    +     +   T  A V  ++ D++   E   ++I V  EN   Y
Sbjct: 16  KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75

Query: 66  VHRAMLM------LQARGNVDEAIKLIEKAISIDKS 95
              A                 +AI    K+++  ++
Sbjct: 76  RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 4e-05
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 28 VEACTLF--AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL 85
          VEA +L+    +  D++D+ GA + F+    V   ++ +  +   +      N+ EA K 
Sbjct: 3  VEAISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTI-LKNMTEAEKA 58

Query: 86 IEKAISIDKSCM 97
            ++I+ DK   
Sbjct: 59 FTRSINRDKHLA 70

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (77), Expect = 0.002
 Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 13/59 (22%)

Query: 35  AQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID 93
           A +   +E++  AEE    +  +  E                  +D+A++ + K    +
Sbjct: 127 AFMYAKKEEWKKAEEQLALATSMKSE-------------PRHSKIDKAMECVWKQKLYE 172

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (76), Expect = 0.002
 Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
           D++  + +L  F    D HS     C     +    ++   AE+ F RSI  D    ++ 
Sbjct: 17  DKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINRDKHL-AVA 72

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKS-CMFAYETLGTIEVQRTFVVLW 116
             +  ++       D AIK +++A+   +   +  Y+ LG         VL+
Sbjct: 73  YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLY 124

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (86), Expect = 8e-05
 Identities = 10/95 (10%), Positives = 32/95 (33%), Gaps = 1/95 (1%)

Query: 6   DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLY 65
           D ++ ++ LK+     D           +   + +Q   +  +     +  +    +   
Sbjct: 153 DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETN 212

Query: 66  VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY 100
            +       + G++D A  L + A++ +      +
Sbjct: 213 FYLGKY-YLSLGDLDSATALFKLAVANNVHNFVEH 246

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 2e-04
 Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 1/70 (1%)

Query: 8   ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH 67
             +E+   +  +      ++ E      +  +   D D A   F  ++  +  N   + +
Sbjct: 189 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRY 248

Query: 68  RAMLMLQARG 77
            A+L L   G
Sbjct: 249 -ALLELSLLG 257

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	116
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.91
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.88
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.87
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.87
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.86
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.86
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.86
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.86
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.85
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.85
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.85
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.85
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.84
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.84
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.83
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.83
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.83
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.82
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.82
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.82
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.8
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.75
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.74
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.68
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.66
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.63
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.62
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.6
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.58
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.58
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.57
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.55
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.55
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.55
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.5
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.5
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.48
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.46
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.45
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.42
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.41
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.36
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.32
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.32
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.29
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	99.29
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.11
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	99.08
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.72
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.65
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.57
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.31
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.25
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	93.09
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	92.05
d3efza1	223	14-3-3 protein cgd1_2980 {Cryptosporidium parvum [	91.46
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	91.13
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	90.5
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	89.27
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	89.03
d1om2a_	95	Mitochondrial import receptor subunit Tom20 {Rat (	85.74
d1om2a_	95	Mitochondrial import receptor subunit Tom20 {Rat (	82.62
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	81.9
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	81.78
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	81.47

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.1e-24  Score=110.16  Aligned_cols=104  Identities=13%  Similarity=0.138  Sum_probs=99.3

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..|.+++..+|.++.+|..+|.++...|++++|+..+.+++.++|+++.+|+++|.++.. +|++++|+
T Consensus        13 ~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~-~~~~~~A~   91 (117)
T d1elwa_          13 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LNRFEEAK   91 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHH-ccCHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999888 99999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEV  108 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~  108 (116)
                      ..++++++.+|+++.++..++.+..
T Consensus        92 ~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          92 RTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            9999999999999999999888753

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.7e-23  Score=110.08  Aligned_cols=105  Identities=13%  Similarity=0.055  Sum_probs=99.2

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +.+.|+|++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|.++.+++.+|.++.. +|++++|+
T Consensus        20 ~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~-~g~~~eA~   98 (159)
T d1a17a_          20 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRAAL   98 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH-cCCHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999888 99999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQ  109 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (116)
                      ..+++++..+|+++.++..++.+...
T Consensus        99 ~~~~~a~~~~p~~~~~~~~l~~~~~~  124 (159)
T d1a17a_          99 RDYETVVKVKPHDKDAKMKYQECNKI  124 (159)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            99999999999999988888777543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=7.2e-23  Score=112.59  Aligned_cols=92  Identities=15%  Similarity=0.086  Sum_probs=87.8

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|+|++|+..|.+++..+|.++.+|.++|.+|...|++++|+..|.+++.++|+++.+|+++|.++.. +|++++|+
T Consensus        14 ~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~-l~~~~~A~   92 (201)
T d2c2la1          14 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-MESYDEAI   92 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH-CCCHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999888 99999999


Q ss_pred             HHHHHHHhcCCCc
Q psy12719         84 KLIEKAISIDKSC   96 (116)
Q Consensus        84 ~~~~~~~~~~~~~   96 (116)
                      ..+++++.++|+.
T Consensus        93 ~~~~~al~l~p~~  105 (201)
T d2c2la1          93 ANLQRAYSLAKEQ  105 (201)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCccc
Confidence            9999999987754

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.3e-21  Score=110.99  Aligned_cols=108  Identities=16%  Similarity=0.128  Sum_probs=89.5

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      ++...|++++|+..|++++.++|+++.++..+|.++...|++++|+..|++++.++|+++.+++.+|.++.. +|++++|
T Consensus        46 ~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A  124 (259)
T d1xnfa_          46 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRDKLA  124 (259)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH-HhhHHHH
Confidence            456778888888888888888888888888888888888888888888888888888888888888888777 8888888


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTIEVQRT  111 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  111 (116)
                      +..++++++.+|++......++.+....+
T Consensus       125 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~  153 (259)
T d1xnfa_         125 QDDLLAFYQDDPNDPFRSLWLYLAEQKLD  153 (259)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHHhh
Confidence            88888888888888776666666555444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.9e-21  Score=99.58  Aligned_cols=106  Identities=13%  Similarity=0.043  Sum_probs=95.2

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHh---hcChhhHHHHHHHHhccCCCC--HHHHHHHHHHHHHhcCCH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD---QEDFDGAEEYFNRSIRVDPEN--ASLYVHRAMLMLQARGNV   79 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~   79 (116)
                      ...+++++|++.|++++..+|.++.+++++|.++..   .+++++|+..+++++..+|.+  ..+++++|.+|.. .|++
T Consensus        10 ~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~-~g~~   88 (122)
T d1nzna_          10 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEY   88 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCH
T ss_pred             cCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH-Hhhh
Confidence            457899999999999999999999999999999986   456678999999999998766  4589999999888 9999


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhc
Q psy12719         80 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRT  111 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  111 (116)
                      ++|+++++++++.+|++..+...++.+....+
T Consensus        89 ~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          89 EKALKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            99999999999999999999999888876654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=9.5e-21  Score=102.08  Aligned_cols=108  Identities=15%  Similarity=0.120  Sum_probs=97.4

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh---------------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV---------------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR   68 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   68 (116)
                      +...|+|++|+..|.+++...|..               ..++.++|.++...|++++|+..+++++.++|+++.+++.+
T Consensus        23 ~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~  102 (170)
T d1p5qa1          23 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRR  102 (170)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHH
Confidence            456899999999999999987653               23577899999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcc
Q psy12719         69 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTF  112 (116)
Q Consensus        69 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  112 (116)
                      |.+++. +|++++|+..|+++++++|+++.+...++.+....+.
T Consensus       103 g~~~~~-~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~  145 (170)
T d1p5qa1         103 GEAHLA-VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR  145 (170)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            999888 9999999999999999999999999999888765543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=7e-21  Score=112.18  Aligned_cols=106  Identities=18%  Similarity=0.257  Sum_probs=66.2

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      ..|++.+|++.++.++...|.+...+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++.. .|++++|+..
T Consensus       283 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~  361 (388)
T d1w3ba_         283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMH  361 (388)
T ss_dssp             HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT-TTCCHHHHHH
T ss_pred             HcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHH
Confidence            344555555555555555555555555566666666666666666666666666666666666666555 6666666666


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHhhcc
Q psy12719         86 IEKAISIDKSCMFAYETLGTIEVQRTF  112 (116)
Q Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~  112 (116)
                      ++++++++|+++.++.++|.++..+||
T Consensus       362 ~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         362 YKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            666666666666666666666666554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.1e-21  Score=104.64  Aligned_cols=109  Identities=20%  Similarity=0.201  Sum_probs=96.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|+|++|++.|.++   .|.++.+++++|.++...|++++|+..|+++++++|+++.+|+++|.++.. +|++++|+
T Consensus        15 ~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~-~g~~~~A~   90 (192)
T d1hh8a_          15 AADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYDLAI   90 (192)
T ss_dssp             HHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh-hccHHHHH
Confidence            45678999999999864   556688999999999999999999999999999999999999999999888 99999999


Q ss_pred             HHHHHHHhcCCCc----------------HHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSC----------------MFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ..+++++...+.+                ..+++++|.++...|++++|
T Consensus        91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A  139 (192)
T d1hh8a_          91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA  139 (192)
T ss_dssp             HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHH
Confidence            9999999865432                46788999999999998764

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.86  E-value=2.8e-21  Score=101.71  Aligned_cols=109  Identities=14%  Similarity=0.100  Sum_probs=96.5

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhh----------cChhhHHHHHHHHhccCCCCHHHHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQ----------EDFDGAEEYFNRSIRVDPENASLYVHRAMLML   73 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   73 (116)
                      +.+.+.|++|+..|+++++.+|++++++..+|.++...          +.+++|+..|+++++++|+++.+++++|.++.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            45678899999999999999999999999999998854          45678999999999999999999999999976


Q ss_pred             HhcC-----------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccc
Q psy12719         74 QARG-----------NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFV  113 (116)
Q Consensus        74 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  113 (116)
                      . +|           .+++|.+.|+++++++|++...+..++.+....+.+
T Consensus        87 ~-~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~  136 (145)
T d1zu2a1          87 S-FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLH  136 (145)
T ss_dssp             H-HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHH
T ss_pred             H-cccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence            5 44           479999999999999999999999999887665544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.9e-21  Score=112.90  Aligned_cols=111  Identities=15%  Similarity=0.191  Sum_probs=84.5

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhc-ChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQE-DFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      .+.+.+++|++.++++++++|++..+|..+|.++...| ++++|+..+++++..+|++..+|..+|.++.. +|++++|+
T Consensus        54 ~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~-l~~~~eAl  132 (315)
T d2h6fa1          54 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LRDPSQEL  132 (315)
T ss_dssp             HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHH
T ss_pred             HhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh-hccHHHHH
Confidence            34566777888888888888888778888877777665 47778888888888888888888888777665 77788888


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.+.++++.+|++..+|..+|.++...|++++|
T Consensus       133 ~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~A  165 (315)
T d2h6fa1         133 EFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE  165 (315)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred             HHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHH
Confidence            888888888887777777888777777776653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.85  E-value=2.9e-20  Score=98.60  Aligned_cols=109  Identities=11%  Similarity=0.118  Sum_probs=97.6

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChh----------------HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVV----------------EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH   67 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   67 (116)
                      +...|+|.+|+..|.+++...|...                .++.++|.++..+|++++|+..+++++.++|.+..+++.
T Consensus        27 ~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~  106 (153)
T d2fbna1          27 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYK  106 (153)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHH
Confidence            3467899999999999998765321                367789999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccc
Q psy12719         68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFV  113 (116)
Q Consensus        68 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  113 (116)
                      +|.++.. +|++++|+..|+++++++|+++.+...+..+....++.
T Consensus       107 ~g~~~~~-lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1         107 LGVANMY-FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             HHHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999888 89999999999999999999999999999888776543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.4e-20  Score=110.85  Aligned_cols=112  Identities=19%  Similarity=0.283  Sum_probs=105.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++.++...|.+...+..++.++.. .|++++|+
T Consensus       247 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~  325 (388)
T d1w3ba_         247 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-QGNIEEAV  325 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH-CCCHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999777 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.++++++.+|+++.++..+|.++...|++++|
T Consensus       326 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  358 (388)
T d1w3ba_         326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA  358 (388)
T ss_dssp             HHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999998865

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.6e-20  Score=106.47  Aligned_cols=112  Identities=13%  Similarity=0.096  Sum_probs=101.2

Q ss_pred             ccchhcHHHHHHHHHHHHhhC----CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTH----SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNV   79 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   79 (116)
                      .....+.+.++..+++.+...    |..+.+++.+|.+|...|++++|+..|++++.++|+++.+++.+|.++.. .|++
T Consensus         9 ~~~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~-~g~~   87 (259)
T d1xnfa_           9 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNF   87 (259)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCH
T ss_pred             ccccHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHH-HHHH
Confidence            345567888888899988754    33467999999999999999999999999999999999999999999888 9999


Q ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         80 DEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      ++|++.+++++..+|+++.++..+|.++..+|++++|
T Consensus        88 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A  124 (259)
T d1xnfa_          88 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA  124 (259)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHH
Confidence            9999999999999999999999999999999998764

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=3.4e-20  Score=99.74  Aligned_cols=109  Identities=15%  Similarity=0.124  Sum_probs=97.1

Q ss_pred             ccchhcHHHHHHHHHHHHhhC----------------CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTH----------------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVH   67 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   67 (116)
                      +...|+|.+|+..|.+++...                |....++.++|.++...|++++|+..+.++++++|.++.+|+.
T Consensus        37 ~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~  116 (169)
T d1ihga1          37 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYR  116 (169)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHh
Confidence            346789999999999988643                4456678899999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccc
Q psy12719         68 RAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFV  113 (116)
Q Consensus        68 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  113 (116)
                      +|.++.. +|++++|++.|+++++++|+++.+...++.+.......
T Consensus       117 ~g~~~~~-l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~  161 (169)
T d1ihga1         117 RAQGWQG-LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ  161 (169)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999888 99999999999999999999999999999887665443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.84  E-value=1.1e-20  Score=95.42  Aligned_cols=86  Identities=10%  Similarity=0.032  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719         30 ACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ  109 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (116)
                      .++.+|..+.+.|++++|+..|++++..+|+++.+|..+|.++.. .+++++|+..++++++.+|+++.+|..+|.++..
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhh-hhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            345667777777777777777777777777777777777777655 6777777777777777777777777777777777


Q ss_pred             hcccccC
Q psy12719        110 RTFVVLW  116 (116)
Q Consensus       110 ~~~~~~a  116 (116)
                      +|++++|
T Consensus        97 ~g~~~~A  103 (112)
T d1hxia_          97 EHNANAA  103 (112)
T ss_dssp             HHHHHHH
T ss_pred             CCCHHHH
Confidence            7766553

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=4.9e-20  Score=101.11  Aligned_cols=88  Identities=18%  Similarity=0.193  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE  107 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  107 (116)
                      +..+...|..++..|++++|+..|++++.++|.++.+|.++|.++.. .|++++|+..+.++++++|+++.+|..+|.++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~-~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhh-hhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            45577899999999999999999999999999999999999999888 99999999999999999999999999999999


Q ss_pred             HhhcccccC
Q psy12719        108 VQRTFVVLW  116 (116)
Q Consensus       108 ~~~~~~~~a  116 (116)
                      ..+|++++|
T Consensus        83 ~~l~~~~~A   91 (201)
T d2c2la1          83 LEMESYDEA   91 (201)
T ss_dssp             HHTTCHHHH
T ss_pred             HHCCCHHHH
Confidence            999998865

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.7e-19  Score=105.04  Aligned_cols=110  Identities=12%  Similarity=0.115  Sum_probs=98.5

Q ss_pred             chhcHHHHHHHHHHHHhhCCCh--hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNV--VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      ..+.+.+|++.+.+++..+|+.  +.++..+|.++...|++++|+..+++++..+|+++.+|..+|.++.. .|++++|+
T Consensus       148 ~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~  226 (323)
T d1fcha_         148 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-GNQSEEAV  226 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccc-cccchhHH
Confidence            3467888999999999998875  56788899999999999999999999999999999999999999877 89999999


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +.++++++.+|+++.++..+|.++...|++++|
T Consensus       227 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A  259 (323)
T d1fcha_         227 AAYRRALELQPGYIRSRYNLGISCINLGAHREA  259 (323)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHH
Confidence            999999999999999999999999999988764

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.83  E-value=2.3e-19  Score=96.40  Aligned_cols=109  Identities=13%  Similarity=0.072  Sum_probs=96.3

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh---------------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV---------------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHR   68 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   68 (116)
                      +.+.|+|.+|+..|.+++...|..               ..++.++|.++...|++++|+..+++++.++|.++.+++.+
T Consensus        25 ~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~  104 (168)
T d1kt1a1          25 YFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRR  104 (168)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHH
Confidence            456789999999999999765332               23577899999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccc
Q psy12719         69 AMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFV  113 (116)
Q Consensus        69 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  113 (116)
                      |.++.. +|++++|+..|.+++.++|+++.++..++.+....+..
T Consensus       105 ~~~~~~-l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1         105 GEAQLL-MNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence            999888 99999999999999999999999999998887665443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.82  E-value=1e-19  Score=91.86  Aligned_cols=87  Identities=13%  Similarity=0.084  Sum_probs=83.1

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      .+.+.|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|+++++++|+++.+++.+|.++.. .|++++|
T Consensus        25 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~-~g~~~~A  103 (112)
T d1hxia_          25 SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNANAA  103 (112)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHHHH
T ss_pred             HHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH-CCCHHHH
Confidence            346789999999999999999999999999999999999999999999999999999999999999999888 8999999


Q ss_pred             HHHHHHHH
Q psy12719         83 IKLIEKAI   90 (116)
Q Consensus        83 ~~~~~~~~   90 (116)
                      ++.+++.+
T Consensus       104 ~~~l~~~l  111 (112)
T d1hxia_         104 LASLRAWL  111 (112)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999876

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.4e-19  Score=105.33  Aligned_cols=110  Identities=11%  Similarity=0.091  Sum_probs=98.8

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      +...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++.. .|++++|+
T Consensus       182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~  260 (323)
T d1fcha_         182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-LGAHREAV  260 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHH
T ss_pred             HHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH-CCCHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999888 89999999


Q ss_pred             HHHHHHHhcCCCcHH-----------HHHHHHHHHHhhcccc
Q psy12719         84 KLIEKAISIDKSCMF-----------AYETLGTIEVQRTFVV  114 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~  114 (116)
                      ..|+++++++|++..           +|..++.++...++.+
T Consensus       261 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d  302 (323)
T d1fcha_         261 EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD  302 (323)
T ss_dssp             HHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHH
Confidence            999999999887643           4566777777776654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.9e-19  Score=105.15  Aligned_cols=105  Identities=9%  Similarity=0.083  Sum_probs=98.0

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE   87 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   87 (116)
                      +++++|+..++++++.+|++..+|..+|.++...|++++|+..+.++++++|++..+|.++|.++.. .|++++|++.+.
T Consensus        92 ~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~-~~~~~~Al~~~~  170 (315)
T d2h6fa1          92 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE-FKLWDNELQYVD  170 (315)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHH-HHhhHHHHHHHH
Confidence            3589999999999999999999999999999999999999999999999999999999999999777 899999999999


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHhhccc
Q psy12719         88 KAISIDKSCMFAYETLGTIEVQRTFV  113 (116)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~~~~~~~~  113 (116)
                      ++++.+|++..+|..++.++...++.
T Consensus       171 ~al~~~p~n~~a~~~r~~~l~~~~~~  196 (315)
T d2h6fa1         171 QLLKEDVRNNSVWNQRYFVISNTTGY  196 (315)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHCCccHHHHHHHHHHHHHcccc
Confidence            99999999999999999998776654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.4e-19  Score=91.15  Aligned_cols=85  Identities=15%  Similarity=0.155  Sum_probs=81.3

Q ss_pred             HHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhh
Q psy12719         31 CTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQR  110 (116)
Q Consensus        31 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  110 (116)
                      +...|..++..|++++|+..|+++++.+|.++.+|..+|.++.. +|++++|+..+.+++..+|+++.+|..+|.++..+
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccc-cccccccchhhhhHHHhccchhhHHHHHHHHHHHc
Confidence            45789999999999999999999999999999999999999888 89999999999999999999999999999999999


Q ss_pred             cccccC
Q psy12719        111 TFVVLW  116 (116)
Q Consensus       111 ~~~~~a  116 (116)
                      |++++|
T Consensus        85 ~~~~~A   90 (117)
T d1elwa_          85 NRFEEA   90 (117)
T ss_dssp             TCHHHH
T ss_pred             cCHHHH
Confidence            998864

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.2e-19  Score=94.21  Aligned_cols=87  Identities=20%  Similarity=0.268  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy12719         29 EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEV  108 (116)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  108 (116)
                      ..+...|..+++.|+|++|+.+|+++++.+|+++.+|+++|.+++. .|++++|+..+.++++.+|+++.+|..+|.++.
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHh-ccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            4466789999999999999999999999999999999999999888 899999999999999999999999999999999


Q ss_pred             hhcccccC
Q psy12719        109 QRTFVVLW  116 (116)
Q Consensus       109 ~~~~~~~a  116 (116)
                      .+|++++|
T Consensus        90 ~~g~~~eA   97 (159)
T d1a17a_          90 ALGKFRAA   97 (159)
T ss_dssp             HTTCHHHH
T ss_pred             HcCCHHHH
Confidence            99998864

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2e-18  Score=88.99  Aligned_cols=101  Identities=15%  Similarity=0.227  Sum_probs=87.4

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH-------HHHHHHHHHHHHhc
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA-------SLYVHRAMLMLQAR   76 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~   76 (116)
                      +...|+|++|+.+|.+++..+|+++.++.++|.++...|++++|+..+.+++.++|+++       .++..+|.++.. .
T Consensus        14 ~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~-~   92 (128)
T d1elra_          14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK-E   92 (128)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-T
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH-h
Confidence            45679999999999999999999999999999999999999999999999999988774       366777788666 8


Q ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy12719         77 GNVDEAIKLIEKAISIDKSCMFAYETLGTI  106 (116)
Q Consensus        77 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  106 (116)
                      +++++|++.+.+++..+|.. .....+..+
T Consensus        93 ~~~~~A~~~~~kal~~~~~~-~~~~~l~~~  121 (128)
T d1elra_          93 EKYKDAIHFYNKSLAEHRTP-DVLKKCQQA  121 (128)
T ss_dssp             TCHHHHHHHHHHHHHHCCCH-HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCH-HHHHHHHHH
Confidence            99999999999999988764 445555444

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=6.9e-17  Score=88.34  Aligned_cols=102  Identities=11%  Similarity=0.065  Sum_probs=88.7

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC----------------HHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----------------ASLYV   66 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----------------~~~~~   66 (116)
                      ++..+|++++|++.|+++++.+|+++.++.++|.++..+|++++|+..|++++...|.+                ..+++
T Consensus        45 ~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~  124 (192)
T d1hh8a_          45 MYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLY  124 (192)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHH
T ss_pred             HHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHH
Confidence            45678999999999999999999999999999999999999999999999998765432                46789


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy12719         67 HRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGT  105 (116)
Q Consensus        67 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~  105 (116)
                      ++|.++.. .|++++|.+.+.+++...|.........+.
T Consensus       125 n~a~~~~~-~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al  162 (192)
T d1hh8a_         125 NIAFMYAK-KEEWKKAEEQLALATSMKSEPRHSKIDKAM  162 (192)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHTTCCSGGGGHHHHHH
T ss_pred             HHHHHHHH-CCCHHHHHHHHHHHHhcCCCcchHHHHHHH
Confidence            99999888 999999999999999998876444444443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.4e-17  Score=80.76  Aligned_cols=83  Identities=20%  Similarity=0.251  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN-------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAY  100 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  100 (116)
                      ++-.+.+|.++++.|++++|+.+|++++++.|.+       ..++.++|.++.+ .|++++|+..++++++++|+++.++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~-~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh-cCChHHHHHHHHHHHHhCcCCHHHH
Confidence            5567899999999999999999999999875543       6789999999888 9999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q psy12719        101 ETLGTIEVQRT  111 (116)
Q Consensus       101 ~~l~~~~~~~~  111 (116)
                      .+++.+...++
T Consensus        84 ~Nl~~~~~~l~   94 (95)
T d1tjca_          84 GNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99998876654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1e-17  Score=86.23  Aligned_cols=87  Identities=18%  Similarity=0.295  Sum_probs=73.7

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH-----
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYET-----  102 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----  102 (116)
                      +..+..+|..++..|+|++|+.+|+++++++|+++.++.++|.++.. +|++++|+..+.++++++|+++..+..     
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHH-cCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999888 899999999999999999887654444     


Q ss_pred             --HHHHHHhhccccc
Q psy12719        103 --LGTIEVQRTFVVL  115 (116)
Q Consensus       103 --l~~~~~~~~~~~~  115 (116)
                        +|.++...+++++
T Consensus        83 ~~lg~~~~~~~~~~~   97 (128)
T d1elra_          83 ARIGNSYFKEEKYKD   97 (128)
T ss_dssp             HHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHhCCHHH
Confidence              5555555555543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.1e-15  Score=89.36  Aligned_cols=110  Identities=11%  Similarity=0.012  Sum_probs=98.7

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcC--hhhHHHHHHHHhccCCCCHHHHH-HHHHHHHHhcCCHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQED--FDGAEEYFNRSIRVDPENASLYV-HRAMLMLQARGNVDEA   82 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~a   82 (116)
                      ..+.+.+|+..+++++..+|++..+|..+|.++...++  +++|+..+.+++..+|.+..++. ..|.++.. .+.+++|
T Consensus        85 ~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~A  163 (334)
T d1dcea1          85 SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA-AVAPAEE  163 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-CCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHh-ccccHHH
Confidence            45678999999999999999999999999998877664  88999999999999999988865 56666544 8999999


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +..+++++..+|++..+|..+|.++..+|++++|
T Consensus       164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A  197 (334)
T d1dcea1         164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS  197 (334)
T ss_dssp             HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHH
Confidence            9999999999999999999999999999998875

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.3e-15  Score=81.69  Aligned_cols=88  Identities=14%  Similarity=0.061  Sum_probs=79.4

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---------------ASLYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      ...+...|..++..|++++|+..|++++...|..               ..++.++|.++++ +|++++|+..+.+++..
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k-~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK-LQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHh-hhhcccccchhhhhhhc
Confidence            4566789999999999999999999999887754               2467789999888 99999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHhhcccccC
Q psy12719         93 DKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        93 ~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +|+++.++..+|.++..+|++++|
T Consensus        92 ~p~~~~a~~~~g~~~~~~g~~~~A  115 (170)
T d1p5qa1          92 DSNNEKGLSRRGEAHLAVNDFELA  115 (170)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cccchhhhHHHHHHHHHhhhHHHH
Confidence            999999999999999999998865

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.63  E-value=3.4e-16  Score=82.93  Aligned_cols=90  Identities=14%  Similarity=0.113  Sum_probs=77.0

Q ss_pred             cchhcHHHHHHHHHHHHhhCCCh------------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCC-----------C
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNV------------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPE-----------N   61 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----------~   61 (116)
                      ...|+|++|+..|++++.+.|+.            ..++.++|.++...|++++|+..+++++.+.|+           .
T Consensus        20 ~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   99 (156)
T d2hr2a1          20 LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLW   99 (156)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchh
Confidence            45689999999999999988764            347889999999999999999999999976432           2


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12719         62 ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS   95 (116)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   95 (116)
                      ..+++++|.++.. +|++++|+..|++++++.|.
T Consensus       100 ~~a~~~~g~~~~~-lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1         100 ISAVYSRALALDG-LGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhhHH
Confidence            3468999999887 99999999999999998553

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.62  E-value=7e-15  Score=77.60  Aligned_cols=88  Identities=15%  Similarity=0.087  Sum_probs=78.2

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC----------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----------------ASLYVHRAMLMLQARGNVDEAIKLIEKAIS   91 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   91 (116)
                      +..+...|..++..|+|.+|+..|.+++...|..                ..++.++|.++++ +|++++|++.+.+++.
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~-l~~~~~Al~~~~~al~   95 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK-NKDYPKAIDHASKVLK   95 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHH-hcccchhhhhhhcccc
Confidence            3456778999999999999999999999876543                2467889999888 9999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         92 IDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        92 ~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .+|++..+|+.+|.++..+|++++|
T Consensus        96 ~~p~~~ka~~~~g~~~~~lg~~~~A  120 (153)
T d2fbna1          96 IDKNNVKALYKLGVANMYFGFLEEA  120 (153)
T ss_dssp             HSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             ccchhhhhhHHhHHHHHHcCCHHHH
Confidence            9999999999999999999999865

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.2e-15  Score=91.81  Aligned_cols=105  Identities=13%  Similarity=0.124  Sum_probs=83.1

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      .+.+++++|+..+.+++..+|  ..++..+|.++...+++++|+.+|++++.++|+++.+++++|.++.. .|++.+|+.
T Consensus       131 ~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~-~~~~~~A~~  207 (497)
T d1ya0a1         131 NKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHLTTIF  207 (497)
T ss_dssp             ------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-cCCHHHHHH
Confidence            445566666666666665543  35788899999999999999999999999999999999999999887 899999999


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhhcc
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQRTF  112 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~  112 (116)
                      .|.+++...|..+.++.+|+.++....+
T Consensus       208 ~y~ral~~~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         208 YYCRSIAVKFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             HHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999998876543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.58  E-value=9.2e-15  Score=78.24  Aligned_cols=86  Identities=13%  Similarity=0.034  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHhhcChhhHHHHHHHHhcc----------------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q psy12719         30 ACTLFAQVLVDQEDFDGAEEYFNRSIRV----------------DPENASLYVHRAMLMLQARGNVDEAIKLIEKAISID   93 (116)
Q Consensus        30 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   93 (116)
                      .....|..++..|++.+|+..|.+++..                +|....++.++|.++.+ +|++++|+..+.++++++
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~Ai~~~~~al~~~  107 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MSDWQGAVDSCLEALEID  107 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHh-hcccchhhhhhhhhhhhh
Confidence            3567889999999999999999998754                35556788999999888 899999999999999999


Q ss_pred             CCcHHHHHHHHHHHHhhcccccC
Q psy12719         94 KSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        94 ~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      |+++.+|..+|.++..+|++++|
T Consensus       108 p~~~~a~~~~g~~~~~l~~~~~A  130 (169)
T d1ihga1         108 PSNTKALYRRAQGWQGLKEYDQA  130 (169)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhhhhHHHhHHHHHHHccCHHHH
Confidence            99999999999999999998764

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.58  E-value=2e-14  Score=76.85  Aligned_cols=88  Identities=11%  Similarity=0.061  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC---------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN---------------ASLYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      +..+...|..++..|++.+|+..|.+++...|..               ..++.++|.+++. +|++++|+..+.+++.+
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~-l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK-LREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHH-hhhcccchhhhhhhhhc
Confidence            4567789999999999999999999998754332               3467789999888 99999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHhhcccccC
Q psy12719         93 DKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        93 ~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +|++..+++.+|.++..+|++++|
T Consensus        94 ~p~~~~a~~~~~~~~~~l~~~~~A  117 (168)
T d1kt1a1          94 DSANEKGLYRRGEAQLLMNEFESA  117 (168)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999998764

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.1e-15  Score=75.08  Aligned_cols=83  Identities=14%  Similarity=0.021  Sum_probs=72.9

Q ss_pred             HHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCc--HHHHHHHHHHH
Q psy12719         33 LFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG---NVDEAIKLIEKAISIDKSC--MFAYETLGTIE  107 (116)
Q Consensus        33 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~  107 (116)
                      .++..+...+++++|.+.|++++..+|.++.+++++|.++.. .+   ++.+|+..+++++..+|..  ..+++++|.++
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~-s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            466778899999999999999999999999999999999765 34   5567999999999988765  56899999999


Q ss_pred             HhhcccccC
Q psy12719        108 VQRTFVVLW  116 (116)
Q Consensus       108 ~~~~~~~~a  116 (116)
                      ...|++++|
T Consensus        83 ~~~g~~~~A   91 (122)
T d1nzna_          83 YRLKEYEKA   91 (122)
T ss_dssp             HHTTCHHHH
T ss_pred             HHHhhhHHH
Confidence            999999865

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=4.2e-15  Score=85.65  Aligned_cols=113  Identities=9%  Similarity=-0.010  Sum_probs=93.0

Q ss_pred             ccchhcHHHHHHHHHHHHhhC------CChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTH------SNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAML   71 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~   71 (116)
                      |...++|++|++.|.+++...      ++...++..+|.+|...|++++|+..+++++.+.+..      ..++..+|.+
T Consensus        47 y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~  126 (290)
T d1qqea_          47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI  126 (290)
T ss_dssp             HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHh
Confidence            456788999999999999874      2335688999999999999999999999999876544      5578888988


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHhhcccccC
Q psy12719         72 MLQARGNVDEAIKLIEKAISIDKS------CMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        72 ~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +....|++++|++.+.+++.+.+.      ...++..+|.++..+|++++|
T Consensus       127 ~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A  177 (290)
T d1qqea_         127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA  177 (290)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHH
Confidence            766469999999999999877432      255688999999999998764

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.55  E-value=1e-14  Score=76.33  Aligned_cols=77  Identities=19%  Similarity=0.187  Sum_probs=68.6

Q ss_pred             HHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy12719         37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQ---------ARGNVDEAIKLIEKAISIDKSCMFAYETLGTIE  107 (116)
Q Consensus        37 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  107 (116)
                      .+.+.+.|++|+..|+++++++|+++.+++++|.++..         ..+.+++|+..++++++++|+++.+++++|.++
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            35677889999999999999999999999999999764         135678999999999999999999999999999


Q ss_pred             Hhhccc
Q psy12719        108 VQRTFV  113 (116)
Q Consensus       108 ~~~~~~  113 (116)
                      ..+|+.
T Consensus        86 ~~~g~~   91 (145)
T d1zu2a1          86 TSFAFL   91 (145)
T ss_dssp             HHHHHH
T ss_pred             HHcccc
Confidence            888754

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.1e-14  Score=71.00  Aligned_cols=69  Identities=12%  Similarity=0.060  Sum_probs=62.4

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCCh-------hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNV-------VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLM   72 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   72 (116)
                      +.+.|+|.+|+.+|+++++..|.+       .+++..+|.++.+.|++++|+..|+++++++|+++.++.+++.+.
T Consensus        15 ~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~   90 (95)
T d1tjca_          15 AYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFE   90 (95)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            457899999999999999886543       578999999999999999999999999999999999999998763

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=3.1e-13  Score=78.31  Aligned_cols=110  Identities=9%  Similarity=0.008  Sum_probs=82.6

Q ss_pred             chhcHHHHHHHHHHHHhhCCChh-HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVV-EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      ..|+++.|...|++++...|.+. .+|..++....+.|+++.|+..|.+++...|.+...+...+.......|+.+.|..
T Consensus       111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~  190 (308)
T d2onda1         111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHH
Confidence            45677778888888877777654 46777777777778888888888888888887777777777665444577788888


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         85 LIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      .+++++..+|.++..|...+..+...|++++
T Consensus       191 i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~  221 (308)
T d2onda1         191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNN  221 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHcCChHH
Confidence            8888888888887788888877777777654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.50  E-value=1e-14  Score=83.10  Aligned_cols=110  Identities=13%  Similarity=0.045  Sum_probs=83.9

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIK   84 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   84 (116)
                      .+.|++++|+..++++++.+|++...+..++.+++..|++++|+..++++++++|++...+..++.++.. .+..+++..
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a-~~~~~~a~~   85 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA-AQARKDFAQ   85 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-ccccHHHHH
Confidence            5679999999999999999999999999999999999999999999999999999998888888777544 344444433


Q ss_pred             HHHHHHh-cCCCcHHHHHHHHHHHHhhccccc
Q psy12719         85 LIEKAIS-IDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        85 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      ...+... ..|.....+...+.+....|+.++
T Consensus        86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~  117 (264)
T d1zbpa1          86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQ  117 (264)
T ss_dssp             SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HhhhhhcccCchHHHHHHHHHHHHHhCCCHHH
Confidence            3222221 234444555566666666666554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8.2e-15  Score=89.98  Aligned_cols=108  Identities=12%  Similarity=0.007  Sum_probs=67.4

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      ..+.|+.++..+.+.+..+|++...+..+|..+...+++++|...+.+++..+|.  .++..+|.++.. .+++++|+.+
T Consensus        98 a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~-~~~~~~A~~~  174 (497)
T d1ya0a1          98 ASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARY-RNQTSQAESY  174 (497)
T ss_dssp             HHHHHHHHHHHHTC-------------------------------CCHHHHHHHH--HHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHH-cccHHHHHHH
Confidence            3566788888888888889999999999999999999999999999999887654  678899999777 8999999999


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         86 IEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      |.+++.++|+++.++..+|.++...|+..+|
T Consensus       175 y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A  205 (497)
T d1ya0a1         175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTT  205 (497)
T ss_dssp             HHHHHHHCTTBSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHCCCchHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999999987654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.46  E-value=9.9e-14  Score=73.29  Aligned_cols=84  Identities=15%  Similarity=-0.028  Sum_probs=71.1

Q ss_pred             HHHHHHHHhhcChhhHHHHHHHHhccCCCC------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----
Q psy12719         32 TLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------------ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS----   95 (116)
Q Consensus        32 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----   95 (116)
                      +..|..++..|+|++|+..|++++.+.|..            ..++.++|.++.. +|++++|++.+++++...|.    
T Consensus        13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~-lg~~~~A~~~~~~al~~~~~~~~~   91 (156)
T d2hr2a1          13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFNRRGEL   91 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH-cCccchhhHhhhhhhhcccccccc
Confidence            344888899999999999999999987764            3578899999888 99999999999999986442    


Q ss_pred             -------cHHHHHHHHHHHHhhcccccC
Q psy12719         96 -------CMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        96 -------~~~~~~~l~~~~~~~~~~~~a  116 (116)
                             ...+++++|.++..+|++++|
T Consensus        92 ~~~~~~~~~~a~~~~g~~~~~lg~~eeA  119 (156)
T d2hr2a1          92 NQDEGKLWISAVYSRALALDGLGRGAEA  119 (156)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cccccchhHHHHhhhHHHHHHHHHHHHH
Confidence                   244688999999999999865

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=1.5e-12  Score=76.00  Aligned_cols=105  Identities=12%  Similarity=0.146  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHhhCCChhHHHHHHHHHHHh----------hcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcC--
Q psy12719         10 VEQSLKEFRNFVDTHSNVVEACTLFAQVLVD----------QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARG--   77 (116)
Q Consensus        10 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--   77 (116)
                      .++|++.+++++..+|++..+|...+.++..          .+++.+|+.++++++..+|++..+|+.+|.++.. .+  
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~-~~~~  123 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LPEP  123 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CSSC
T ss_pred             cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH-hccc
Confidence            4899999999999999999998877776554          3457899999999999999999999999998665 54  


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHhhccccc
Q psy12719         78 NVDEAIKLIEKAISIDKSCMFAY-ETLGTIEVQRTFVVL  115 (116)
Q Consensus        78 ~~~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~  115 (116)
                      ++++++..+.+++..+|....++ ...+.++...+.+++
T Consensus       124 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (334)
T d1dcea1         124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE  162 (334)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHH
T ss_pred             cHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHH
Confidence            58999999999999999987776 466778877776654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=4e-12  Score=68.47  Aligned_cols=85  Identities=12%  Similarity=0.051  Sum_probs=76.7

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChh----------------------HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVV----------------------EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENA   62 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~   62 (116)
                      ...|++++|++.|.+++.+.++..                      .++..++.++...|++++|+..+++++..+|.+.
T Consensus        22 ~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e  101 (179)
T d2ff4a2          22 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE  101 (179)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccH
Confidence            457899999999999999876441                      3678899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12719         63 SLYVHRAMLMLQARGNVDEAIKLIEKAI   90 (116)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~   90 (116)
                      .+|..++.++.. .|++.+|++.|+++.
T Consensus       102 ~~~~~l~~al~~-~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2         102 PLWTQLITAYYL-SDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHHHHT-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hcCHHHHHHHHHHHH
Confidence            999999999887 999999999999983

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=8e-13  Score=75.99  Aligned_cols=112  Identities=13%  Similarity=0.088  Sum_probs=90.2

Q ss_pred             cccchhcHHHHHHHHHHHHhhCCCh------hHHHHHHHHHHHh-hcChhhHHHHHHHHhccCCCC------HHHHHHHH
Q psy12719          3 VPGDRERVEQSLKEFRNFVDTHSNV------VEACTLFAQVLVD-QEDFDGAEEYFNRSIRVDPEN------ASLYVHRA   69 (116)
Q Consensus         3 ~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~   69 (116)
                      +|.++|++++|++.+.+++...+..      ..++..+|.++.. .|++++|+..|++++.+.+..      ..++.++|
T Consensus        86 ~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la  165 (290)
T d1qqea_          86 CFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA  165 (290)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Confidence            4567899999999999999886544      4578888888855 699999999999998764322      45688999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHhhccccc
Q psy12719         70 MLMLQARGNVDEAIKLIEKAISIDKSCM-------FAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        70 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~  115 (116)
                      .++.. +|++++|+..+++++...+..+       ..+...+.++...|+++.
T Consensus       166 ~~~~~-~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  217 (290)
T d1qqea_         166 DLKAL-DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVA  217 (290)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHH-cChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHH
Confidence            99887 9999999999999999877653       456677888877777654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=4.9e-12  Score=73.24  Aligned_cols=111  Identities=8%  Similarity=0.057  Sum_probs=90.9

Q ss_pred             ccchhcHHHHHHHHHHHHhhCCChh-----HHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC------HHHHHHHHHHH
Q psy12719          4 PGDRERVEQSLKEFRNFVDTHSNVV-----EACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN------ASLYVHRAMLM   72 (116)
Q Consensus         4 ~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~   72 (116)
                      +...|++++|++.+++++...|++.     .++..+|.++...|++++|+..|++++...|..      ...+..++.++
T Consensus        22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  101 (366)
T d1hz4a_          22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL  101 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            4568999999999999999998763     477889999999999999999999998865433      44678888887


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHhhccccc
Q psy12719         73 LQARGNVDEAIKLIEKAISIDK--------SCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        73 ~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      .. .|++..+...+.+++...+        .....+..+|.++...|+++.
T Consensus       102 ~~-~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  151 (366)
T d1hz4a_         102 FA-QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE  151 (366)
T ss_dssp             HH-TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HH-HHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhh
Confidence            77 8999999999999987532        224567788899988888764

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=2.7e-11  Score=70.07  Aligned_cols=109  Identities=8%  Similarity=-0.018  Sum_probs=93.6

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHH-hhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLV-DQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAI   83 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   83 (116)
                      .+.++++.|...|.+++...|.+...+...+.... ..|+.+.|...|++++...|.++..|...+..+.. .|++++|.
T Consensus       145 ~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~-~g~~~~aR  223 (308)
T d2onda1         145 RRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDNNTR  223 (308)
T ss_dssp             HHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCCHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-cCChHHHH
Confidence            35678999999999999999999999988887654 56899999999999999999999999999999776 89999999


Q ss_pred             HHHHHHHhcCCCc----HHHHHHHHHHHHhhcccc
Q psy12719         84 KLIEKAISIDKSC----MFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        84 ~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~  114 (116)
                      ..|++++...|.+    ...|..........|+.+
T Consensus       224 ~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~  258 (308)
T d2onda1         224 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA  258 (308)
T ss_dssp             HHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHH
Confidence            9999999987754    346777777777777654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.32  E-value=2.9e-11  Score=65.05  Aligned_cols=88  Identities=11%  Similarity=-0.091  Sum_probs=78.7

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC----------------------HHHHHHHHHHHHHhcCCHHHHHHH
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----------------------ASLYVHRAMLMLQARGNVDEAIKL   85 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~a~~~   85 (116)
                      ...+...|......|++++|...|.+++.+.+..                      ..++..++.++.. .|++++|+..
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~-~g~~~~Al~~   89 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA-CGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHH
Confidence            4577889999999999999999999999987543                      2467889999887 8999999999


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHhhcccccC
Q psy12719         86 IEKAISIDKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      +++++..+|.+..+|..++.++...|++.+|
T Consensus        90 ~~~al~~~P~~e~~~~~l~~al~~~Gr~~eA  120 (179)
T d2ff4a2          90 LEALTFEHPYREPLWTQLITAYYLSDRQSDA  120 (179)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhcCHHHH
Confidence            9999999999999999999999999998764

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.29  E-value=1.3e-11  Score=70.14  Aligned_cols=78  Identities=15%  Similarity=0.159  Sum_probs=70.6

Q ss_pred             HHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         36 QVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        36 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      .-....|++++|+..++++++.+|++..++..++.+++. .|++++|...++++++.+|++...+..++.++...+..+
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~-~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccH
Confidence            445688999999999999999999999999999999888 899999999999999999999999999988877655443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=1.2e-10  Score=58.45  Aligned_cols=82  Identities=7%  Similarity=0.008  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHHHhh---cChhhHHHHHHHHhccCCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q psy12719         28 VEACTLFAQVLVDQ---EDFDGAEEYFNRSIRVDPEN-ASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETL  103 (116)
Q Consensus        28 ~~~~~~~~~~~~~~---~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l  103 (116)
                      ..+.+.+|.++.+.   .+.++++..++.+++.+|.. ..+++.+|..+++ +|+|++|.++++++++.+|++..+....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk-lgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            67888999888754   56789999999999999876 4799999999998 8999999999999999999999887776


Q ss_pred             HHHHHhh
Q psy12719        104 GTIEVQR  110 (116)
Q Consensus       104 ~~~~~~~  110 (116)
                      ..+....
T Consensus       114 ~~Ie~~~  120 (124)
T d2pqrb1         114 SMVEDKI  120 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=3.8e-10  Score=65.15  Aligned_cols=109  Identities=11%  Similarity=0.027  Sum_probs=71.5

Q ss_pred             hhcHHHHHHHHHHHHhhCCC-------hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCC----HHHHHHHHHHHHHh
Q psy12719          7 RERVEQSLKEFRNFVDTHSN-------VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPEN----ASLYVHRAMLMLQA   75 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~~~   75 (116)
                      .+++.++...+.++....+.       ...++...+.++...|++++|...+.+++...|.+    ...+.++|.++.. 
T Consensus       185 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-  263 (366)
T d1hz4a_         185 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL-  263 (366)
T ss_dssp             HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH-
T ss_pred             hhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-
Confidence            45556666666665544321       23355667777777788888888887777766544    3456667777666 


Q ss_pred             cCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHhhcccccC
Q psy12719         76 RGNVDEAIKLIEKAISI------DKSCMFAYETLGTIEVQRTFVVLW  116 (116)
Q Consensus        76 ~~~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a  116 (116)
                      .|++++|...+++++..      .|....++..+|.++..+|++++|
T Consensus       264 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  310 (366)
T d1hz4a_         264 LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA  310 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHH
Confidence            78888888887777643      344466777778888777777654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=6e-10  Score=55.91  Aligned_cols=67  Identities=10%  Similarity=0.123  Sum_probs=59.5

Q ss_pred             cchhcHHHHHHHHHHHHhhCCCh-hHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHH
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNV-VEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAML   71 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   71 (116)
                      ....+..+++.+++.+++.+|.+ .+.++.+|..|.+.|++++|..+++++++++|++..+....-.+
T Consensus        49 ~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~I  116 (124)
T d2pqrb1          49 TDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  116 (124)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHH
Confidence            35578899999999999999876 47999999999999999999999999999999999887665554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.72  E-value=4.1e-07  Score=46.19  Aligned_cols=95  Identities=8%  Similarity=0.126  Sum_probs=70.0

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh---cCCHHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA---RGNVDEAI   83 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~   83 (116)
                      ..|+++|+.+|+++.+..  ++.+...++.  ....+.++|+.+++++.+.  .++.+.+.+|.++...   ..++++|.
T Consensus         6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHH
Confidence            357889999999988764  4455555654  3466788889998888765  5778888888886642   24688899


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719         84 KLIEKAISIDKSCMFAYETLGTIEVQ  109 (116)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (116)
                      ++++++.+.  .++.+...||.++..
T Consensus        80 ~~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          80 QYYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHhhhhcc--CcchHHHHHHHHHHc
Confidence            999888765  456678888888765

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.65  E-value=1.4e-06  Score=44.11  Aligned_cols=86  Identities=13%  Similarity=0.245  Sum_probs=71.3

Q ss_pred             chhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHh----hcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh---cCC
Q psy12719          6 DRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA---RGN   78 (116)
Q Consensus         6 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~   78 (116)
                      ...+.++|+++++++.+.  +++.+.+.+|.+|..    ..++.+|..+|+++.+.  .++.+.+.+|.+|...   ..+
T Consensus        35 ~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          35 SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred             cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCC
Confidence            346789999999999875  678888999999875    56789999999999876  5788899999997762   358


Q ss_pred             HHHHHHHHHHHHhcCCC
Q psy12719         79 VDEAIKLIEKAISIDKS   95 (116)
Q Consensus        79 ~~~a~~~~~~~~~~~~~   95 (116)
                      +.+|.++++++.+....
T Consensus       111 ~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_         111 EKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             HHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHCCCH
Confidence            99999999999887544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.57  E-value=1.6e-06  Score=48.48  Aligned_cols=99  Identities=14%  Similarity=0.205  Sum_probs=73.9

Q ss_pred             cchhcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHh----hcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh---cC
Q psy12719          5 GDRERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVD----QEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA---RG   77 (116)
Q Consensus         5 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~   77 (116)
                      ...+++++|+++|+++.+.  ++..+...+|.++..    ..++..|..++..+....  .+.+...+|.++...   ..
T Consensus        13 ~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~~~~~~~~~~~~   88 (265)
T d1ouva_          13 YKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQ   88 (265)
T ss_dssp             HHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCC
T ss_pred             HHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccccccccccccch
Confidence            4567899999999999765  567888899999886    668888998888877554  667778888875431   36


Q ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy12719         78 NVDEAIKLIEKAISIDKSCMFAYETLGTIEVQ  109 (116)
Q Consensus        78 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  109 (116)
                      +.+.|...++.+....+.  .+...++..+..
T Consensus        89 ~~~~a~~~~~~a~~~g~~--~a~~~l~~~~~~  118 (265)
T d1ouva_          89 NTNKALQYYSKACDLKYA--EGCASLGGIYHD  118 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred             hhHHHHHHHhhhhhhhhh--hHHHhhcccccC
Confidence            788899999988876543  445666665544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.31  E-value=3e-05  Score=43.16  Aligned_cols=79  Identities=18%  Similarity=0.241  Sum_probs=64.6

Q ss_pred             hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q psy12719         27 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQA---RGNVDEAIKLIEKAISIDKSCMFAYETL  103 (116)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~l  103 (116)
                      +|.+++.+|..+...+++++|+++|+++.+.  .+..+.+.+|.++...   ..++..+...+..+...  .++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence            4678999999999999999999999999875  5788999999997652   46899999999988765  456667777


Q ss_pred             HHHHHh
Q psy12719        104 GTIEVQ  109 (116)
Q Consensus       104 ~~~~~~  109 (116)
                      +.++..
T Consensus        77 ~~~~~~   82 (265)
T d1ouva_          77 GNLYYS   82 (265)
T ss_dssp             HHHHHH
T ss_pred             cccccc
Confidence            777654

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.27  Score=29.28  Aligned_cols=82  Identities=15%  Similarity=0.151  Sum_probs=45.9

Q ss_pred             hcHHHHHHHHHHHHhhCCChhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12719          8 ERVEQSLKEFRNFVDTHSNVVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIE   87 (116)
Q Consensus         8 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   87 (116)
                      +..+.+...+........+........+ .....+++..+...+...-......+...|-+|..+.. .|+.+.|...+.
T Consensus       266 ~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~-~G~~~~A~~~~~  343 (450)
T d1qsaa1         266 DVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLE-RGREAEAKEILH  343 (450)
T ss_dssp             TCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred             CchHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHH-cCChhhHHHHHH
Confidence            3344555555554444333333222333 34456777777777665433223335566777777555 788888887777


Q ss_pred             HHHh
Q psy12719         88 KAIS   91 (116)
Q Consensus        88 ~~~~   91 (116)
                      .+..
T Consensus       344 ~~a~  347 (450)
T d1qsaa1         344 QLMQ  347 (450)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            7654

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.09  E-value=0.095  Score=23.65  Aligned_cols=28  Identities=11%  Similarity=0.122  Sum_probs=21.7

Q ss_pred             hHHHHHHHHHHHhhcChhhHHHHHHHHh
Q psy12719         28 VEACTLFAQVLVDQEDFDGAEEYFNRSI   55 (116)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~   55 (116)
                      +-.+...+.-+...|+|++|+++.+++.
T Consensus         8 AH~~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1           8 AHQQSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3456677888888999999998887764

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.05  E-value=0.49  Score=28.91  Aligned_cols=50  Identities=12%  Similarity=0.091  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhcccc
Q psy12719         64 LYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTIEVQRTFVV  114 (116)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  114 (116)
                      .....+...+. .|+|.-|.+....++..+|++..+...++.++.++|.-.
T Consensus       432 ~~~~~a~~~~~-~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~  481 (505)
T d2cfua2         432 RLLEQARASYA-RGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA  481 (505)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhC
Confidence            45566766666 799999999999999999999999999999998887544

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

Probab=91.46  E-value=0.4  Score=26.04  Aligned_cols=47  Identities=21%  Similarity=0.395  Sum_probs=34.5

Q ss_pred             hhHHHHHHHHhcc-------CCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12719         45 DGAEEYFNRSIRV-------DPENAS---LYVHRAMLMLQARGNVDEAIKLIEKAIS   91 (116)
Q Consensus        45 ~~A~~~~~~a~~~-------~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~   91 (116)
                      +.|...|+.|+.+       .|.+|.   ...+.+..++...++.++|++..+.+++
T Consensus       124 ~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~~lAk~Afd  180 (223)
T d3efza1         124 KQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQ  180 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4577777777533       366653   4667788888888999999999888874

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=91.13  E-value=0.85  Score=27.05  Aligned_cols=107  Identities=10%  Similarity=-0.015  Sum_probs=65.3

Q ss_pred             hhcHHHHHHHHHHHHhhCCChhHHHHH----HHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHH
Q psy12719          7 RERVEQSLKEFRNFVDTHSNVVEACTL----FAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEA   82 (116)
Q Consensus         7 ~~~~~~A~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a   82 (116)
                      ..+.+.+...+.......+.+..-+..    ++......+..+.+............+.......++.. +. .++...+
T Consensus       227 ~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~a-l~-~~~~~~~  304 (450)
T d1qsaa1         227 RQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMA-LG-TGDRRGL  304 (450)
T ss_dssp             HHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHH-HH-HTCHHHH
T ss_pred             ccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHH-HH-cCChHHH
Confidence            356777888887776665554332222    23333345666777777777665554444444445544 55 5888888


Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHhhccccc
Q psy12719         83 IKLIEKAISIDKSCMFAYETLGTIEVQRTFVVL  115 (116)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  115 (116)
                      ...+...-......+...+-+|..+...|+.++
T Consensus       305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~  337 (450)
T d1qsaa1         305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAE  337 (450)
T ss_dssp             HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhcCcccccHHHHHHHHHHHHHHcCChhh
Confidence            777765433223346677888888888887654

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.50  E-value=0.36  Score=21.72  Aligned_cols=28  Identities=32%  Similarity=0.315  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy12719         63 SLYVHRAMLMLQARGNVDEAIKLIEKAIS   91 (116)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   91 (116)
                      ..+-..+..++. .|.|++|+++.+++..
T Consensus         9 H~~~RrAer~l~-~~rydeAIech~kA~~   36 (83)
T d2crba1           9 HQQSRRADRLLA-AGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence            345667787777 8999999999887765

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=89.27  E-value=0.91  Score=24.54  Aligned_cols=59  Identities=3%  Similarity=0.132  Sum_probs=42.9

Q ss_pred             HHHHHHHHH-----hhcChhhHHHHHHHHhcc--------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy12719         31 CTLFAQVLV-----DQEDFDGAEEYFNRSIRV--------DPENASLYVHRAMLMLQARGNVDEAIKLIEKA   89 (116)
Q Consensus        31 ~~~~~~~~~-----~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   89 (116)
                      +...|..|.     ..|..+.|...|+.|..+        +|--.....+.+..++...++.++|++..+.+
T Consensus       121 ~KmKGDYyRYlaE~~~~~~~~a~~aY~~A~~ia~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A  192 (220)
T d2o8pa1         121 LKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSL  192 (220)
T ss_dssp             HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            344565554     466778888888887653        23335577888999899899999999987776

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=89.03  E-value=0.71  Score=23.00  Aligned_cols=58  Identities=24%  Similarity=0.211  Sum_probs=45.9

Q ss_pred             HHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q psy12719         37 VLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKS   95 (116)
Q Consensus        37 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   95 (116)
                      +...+|+-+.-.+.++..++...-++..+..+|.+|-+ .|+..++-+.+.++.+..-.
T Consensus        95 ~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kk-ig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          95 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRR-VGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHhHH
Confidence            34567777777788888888888889999999999666 89999999999999876443

>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: Mitochondrial import receptor subunit Tom20
family: Mitochondrial import receptor subunit Tom20
domain: Mitochondrial import receptor subunit Tom20
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.74  E-value=0.71  Score=21.43  Aligned_cols=32  Identities=16%  Similarity=0.259  Sum_probs=24.1

Q ss_pred             HHHHHHHHhhcChhhHHHHHHHHhccCCCCHH
Q psy12719         32 TLFAQVLVDQEDFDGAEEYFNRSIRVDPENAS   63 (116)
Q Consensus        32 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~   63 (116)
                      ..+|..+...|+++++...|-.|+...|+-..
T Consensus        24 V~lGE~Ll~~G~~~~g~~h~~nAi~Vc~qP~~   55 (95)
T d1om2a_          24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ   55 (95)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHcCCHHH
Confidence            35677777888888888888888877766543

>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: Mitochondrial import receptor subunit Tom20
family: Mitochondrial import receptor subunit Tom20
domain: Mitochondrial import receptor subunit Tom20
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.62  E-value=1.4  Score=20.40  Aligned_cols=32  Identities=13%  Similarity=0.241  Sum_probs=25.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q psy12719         66 VHRAMLMLQARGNVDEAIKLIEKAISIDKSCMF   98 (116)
Q Consensus        66 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~   98 (116)
                      ..+|..++. .|+++++...|-+|+...|.-..
T Consensus        24 V~lGE~Ll~-~G~~~~g~~h~~nAi~Vc~qP~~   55 (95)
T d1om2a_          24 IQLGEELLA-QGDYEKGVDHLTNAIAVCGQPQQ   55 (95)
T ss_dssp             HHHHHHHHH-HTCHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHh-CCCHHHHHHHHHHHHHHcCCHHH
Confidence            467888777 79999999999999998776433

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.90  E-value=3.1  Score=23.88  Aligned_cols=79  Identities=18%  Similarity=0.195  Sum_probs=44.8

Q ss_pred             hhHHHHHHHHHHHhhcChhhHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy12719         27 VVEACTLFAQVLVDQEDFDGAEEYFNRSIRVDPENASLYVHRAMLMLQARGNVDEAIKLIEKAISIDKSCMFAYETLGTI  106 (116)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  106 (116)
                      +..+|......+.......-+... ...+.   ..+.-.......+-. .|.+++.+..++.++...+.++..+..++.+
T Consensus        68 ~~~~~k~~~~~l~~~~e~~la~i~-~~~~~---~~~d~l~~~v~~ye~-~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~l  142 (336)
T d1b89a_          68 STRTWKEVCFACVDGKEFRLAQMC-GLHIV---VHADELEELINYYQD-RGYFEELITMLEAALGLERAHMGMFTELAIL  142 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHT-TTTTT---TCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCcHHHHHHHH-HHHhh---cCHHHHHHHHHHHHH-cCChHHHHHHHHHHHcCCccchHHHHHHHHH
Confidence            344555555555554444332111 11111   223333344455344 7888888888888887777777777777777


Q ss_pred             HHhh
Q psy12719        107 EVQR  110 (116)
Q Consensus       107 ~~~~  110 (116)
                      +.+.
T Consensus       143 yak~  146 (336)
T d1b89a_         143 YSKF  146 (336)
T ss_dssp             HHTT
T ss_pred             HHHh
Confidence            6654

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.78  E-value=1.8  Score=23.47  Aligned_cols=48  Identities=13%  Similarity=0.277  Sum_probs=36.3

Q ss_pred             hhHHHHHHHHhc-----cCCCCHH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q psy12719         45 DGAEEYFNRSIR-----VDPENAS---LYVHRAMLMLQARGNVDEAIKLIEKAISI   92 (116)
Q Consensus        45 ~~A~~~~~~a~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~   92 (116)
                      +.|...|++|+.     +.|.+|.   ...+.+..++...|+.++|++..++++..
T Consensus       143 ~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~  198 (230)
T d2o02a1         143 DQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDE  198 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            467778887764     4566654   45677888888899999999999888753

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.47  E-value=1.5  Score=20.04  Aligned_cols=21  Identities=19%  Similarity=0.227  Sum_probs=12.1

Q ss_pred             HHHHHhhcChhhHHHHHHHHh
Q psy12719         35 AQVLVDQEDFDGAEEYFNRSI   55 (116)
Q Consensus        35 ~~~~~~~~~~~~A~~~~~~a~   55 (116)
                      |.-+-..|+|++|+.+|..++
T Consensus        22 Av~~D~~g~y~eA~~~Y~~ai   42 (93)
T d1wfda_          22 AVELDAESRYQQALVCYQEGI   42 (93)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHH
Confidence            333445666666666666654