Psyllid ID: psy12724

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
FVFWPVAVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Secondary Structure (PSIPRED)
ccEEccEEEEEEEEccccEEEEEEEEEEEEEEccccccccEEEEEEEEEccccEEEEEcccEEEEEccEEEEcEEEEEEcccEEEEccccccccccEEEEEEEEcccccEEEEccccccccEEEcccccEEEEcccccccccccEEEEEcccccEEEEEccccEEEc
Secondary Structure Prediction (SSPRO)
cccccccHEEEEEcccccccccEEEEEEEcccccHHHHHHHHHHEEEEEccccccEEccccEEEEEEEEEEEEccEEEEccEEEEEEEcccHHHHHEEEEEEEcccccEEEcccccccccEEEEEcccEEEEEEcccccccccEEEEEEEEccccEEEEccccEEEc
Coil and Loop (DISEMBL)
FVFWPVAVISQYYEAQVYDVFVIKGNAavfkcnlpsfvsdhldvvswadtdggqyqidnqdfVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDmtestdgkylvlpsgelhirdvgpedgyksyqcrtkhrltgetrlsatkgrlvi
Flexible Loop (DISEMBL)
FVFWPVAVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHirdvgpedgyksyqcrtkhrltgetrlsatkgrlvi
Low Complexity Region (SEG)
FVFWPVAVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Disordered region (IsUnstruct)
*VFWPVAVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQC*********************
Disordered Region (DISOPRED)
FVFWPVAVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELF******T**KYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSA*KGRLVI
Disordered Region (DISEMBL)
FVFWPVAVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Disordered Region (DISPRO)
FVFWPVAVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FVFWPVAVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
Q8VHZ8	2013	Down syndrome cell adhesi	yes	N/A	0.862	0.071	0.341	7e-16
Q9ERC8	2013	Down syndrome cell adhesi	yes	N/A	0.862	0.071	0.341	8e-16
O60469	2012	Down syndrome cell adhesi	yes	N/A	0.862	0.071	0.335	9e-16
Q4VA61	2053	Down syndrome cell adhesi	no	N/A	0.694	0.056	0.349	3e-13
Q8TD84	2053	Down syndrome cell adhesi	no	N/A	0.694	0.056	0.357	2e-12
Q9VS29	2074	Down syndrome cell adhesi	no	N/A	0.616	0.049	0.342	3e-12
Q9BWV1	1114	Brother of CDO OS=Homo sa	no	N/A	0.538	0.080	0.285	3e-05

>sp|Q8VHZ8|DSCAM_RAT Down syndrome cell adhesion molecule homolog OS=Rattus norvegicus GN=Dscam PE=1 SV=1

 Score = 83.2 bits (204), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 17/161 (10%)

Query: 16  QVYDVFVIK-----GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDF----VVSQ 66
           ++YDV  I+     G   +F     SF +   D   +   +    +I +QD     V+ +
Sbjct: 65  EIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIRSQDVHIKAVLRE 124

Query: 67  SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP 126
            YTV + D+  ++GN AV KC IPS V  YV V SW  D        ++  +  ++L+  
Sbjct: 125 PYTVRVEDQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDT-------VSLVSGSRFLITS 177

Query: 127 SGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
           +G L+I+DV  EDG  +Y+C T+HR TGETR S +  RL +
Sbjct: 178 TGALYIKDVQNEDGLYNYRCITRHRYTGETRQSNS-ARLFV 217

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38 (By similarity). Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC.
Rattus norvegicus (taxid: 10116)

>sp|Q9ERC8|DSCAM_MOUSE Down syndrome cell adhesion molecule homolog OS=Mus musculus GN=Dscam PE=1 SV=1

 Score = 83.2 bits (204), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 17/161 (10%)

Query: 16  QVYDVFVIK-----GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDF----VVSQ 66
           ++YDV  I+     G   +F     SF +   D   +   +    +I +QD     V+ +
Sbjct: 65  EIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIRSQDVHIKAVLRE 124

Query: 67  SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP 126
            YTV + D+  ++GN AV KC IPS V  YV V SW  D        ++  +  ++L+  
Sbjct: 125 PYTVRVEDQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDT-------VSLVSGSRFLITS 177

Query: 127 SGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
           +G L+I+DV  EDG  +Y+C T+HR TGETR S +  RL +
Sbjct: 178 TGALYIKDVQNEDGLYNYRCITRHRYTGETRQSNS-ARLFV 217

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.

Mus musculus (taxid: 10090)

>sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1 SV=2

 Score = 82.8 bits (203), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 17/161 (10%)

Query: 16  QVYDVFVIK-----GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDF----VVSQ 66
           ++YDV  I+     G   +F     SF +   D   +   +    +I +QD     V+ +
Sbjct: 65  EIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIRSQDVHIKAVLRE 124

Query: 67  SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP 126
            YTV + D+  ++GN AV KC IPS V  Y+ V SW  D        ++  +  ++L+  
Sbjct: 125 PYTVRVEDQKTMRGNVAVFKCIIPSSVEAYITVVSWEKDT-------VSLVSGSRFLITS 177

Query: 127 SGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
           +G L+I+DV  EDG  +Y+C T+HR TGETR S +  RL +
Sbjct: 178 TGALYIKDVQNEDGLYNYRCITRHRYTGETRQSNS-ARLFV 217

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.

Homo sapiens (taxid: 9606)

>sp|Q4VA61|DSCL1_MOUSE Down syndrome cell adhesion molecule-like protein 1 homolog OS=Mus musculus GN=Dscaml1 PE=1 SV=2

 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 10/126 (7%)

Query: 36  SFVSDHLDVVSWADTDGGQYQIDNQDF--VVSQSYTVNIMDEHVLKGNSAVLKCHIPSFV 93
           SF+ D+ D    A+   G+ +  N     V  + YTV + D+  ++GN AV KC IPS V
Sbjct: 94  SFIHDN-DYFCTAENAAGKIRSPNIRIKAVFREPYTVRVEDQRSMRGNVAVFKCLIPSSV 152

Query: 94  ADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT 153
            +YV+V SW  D        ++ + + ++ +   G L+I DV  ED   +Y+C T+H+ +
Sbjct: 153 QEYVSVVSWEKDT-------VSITPENRFFITSHGGLYISDVQKEDALSTYRCITQHKYS 205

Query: 154 GETRLS 159
           GETR S
Sbjct: 206 GETRQS 211

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Promotes both isoneuronal self-avoidance for creating an orderly neurite arborization in retinal rod bipolar cells and heteroneuronal self-avoidance to maintain mosaic spacing between AII amacrine cells.

Mus musculus (taxid: 10090)

>sp|Q8TD84|DSCL1_HUMAN Down syndrome cell adhesion molecule-like protein 1 OS=Homo sapiens GN=DSCAML1 PE=1 SV=2

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 68/126 (53%), Gaps = 10/126 (7%)

Query: 36  SFVSDHLDVVSWADTDGGQYQIDN--QDFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFV 93
           SF+ D+ D    A+   G+ +  N     V  + YTV + D+  ++GN AV KC IPS V
Sbjct: 94  SFIHDN-DYFCTAENAAGKIRSPNIRVKAVFREPYTVRVEDQRSMRGNVAVFKCLIPSSV 152

Query: 94  ADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT 153
            +YV+V SW  D        ++   + ++ +   G L+I DV  ED   +Y+C TKH+ +
Sbjct: 153 QEYVSVVSWEKDT-------VSIIPEHRFFITYHGGLYISDVQKEDALSTYRCITKHKYS 205

Query: 154 GETRLS 159
           GETR S
Sbjct: 206 GETRQS 211

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Promotes both isoneuronal self-avoidance for creating an orderly neurite arborization in retinal rod bipolar cells and heteroneuronal self-avoidance to maintain mosaic spacing between AII amacrine cells.

Homo sapiens (taxid: 9606)

>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2 OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 8/111 (7%)

Query: 63  VVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY 122
           VV+Q+Y V++      +G +A+L+C +P+FV + V V SW+ +    +++  +   DGK+
Sbjct: 128 VVAQAYKVDVEVLSAARGCTAILRCVVPTFVKELVRVVSWVHEPA--IYIYPSLQGDGKF 185

Query: 123 LVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGE------TRLSATKGRLVI 167
            +LP+GEL I ++   D  +S++CR+ HRLT +      TRL     R +I
Sbjct: 186 HLLPTGELLIHNLQESDESQSFRCRSMHRLTRQVVVSSPTRLRINSHRGII 236

Cell adhesion molecule.

Drosophila melanogaster (taxid: 7227)

>sp|Q9BWV1|BOC_HUMAN Brother of CDO OS=Homo sapiens GN=BOC PE=1 SV=1

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 22/112 (19%)

Query: 60  QDFVVSQSYTVNIMDEHVLKGNSAVLKCHIPS----FVADYVAVESWISDQGEELFVDMT 115
           QDF +   + + + DE    GN+AV+ CH+P         Y   + W+            
Sbjct: 128 QDFKLDVQHVIEV-DE----GNTAVIACHLPESHPKAQVRYSVKQEWL------------ 170

Query: 116 ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
           E++ G YL++PSG L I +   ED    Y+C   + +T E + S +  RL +
Sbjct: 171 EASRGNYLIMPSGNLQIVNASQED-EGMYKCAAYNPVTQEVKTSGSSDRLRV 221

Component of a cell-surface receptor complex that mediates cell-cell interactions between muscle precursor cells. Promotes differentiation of myogenic cells.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
198456023	6743	dscam [Drosophila pseudoobscura pseudoob	0.940	0.023	0.672	9e-60
195581170	2908	GD10266 [Drosophila simulans] gi|1941924	0.940	0.053	0.679	2e-59
195382125	2232	dscam [Drosophila virilis] gi|194144578|	0.952	0.071	0.639	7e-54
195123131	2326	dscam [Drosophila mojavensis] gi|1939111	0.952	0.068	0.633	9e-54
195025469	2230	GH20743 [Drosophila grimshawi] gi|193902	0.952	0.071	0.627	1e-53
195431192	2234	GK22019 [Drosophila willistoni] gi|19415	0.982	0.073	0.625	3e-53
195332081	2283	GM20804 [Drosophila sechellia] gi|194124	0.982	0.071	0.619	6e-53
194863848	1317	GG10759 [Drosophila erecta] gi|190662511	0.952	0.120	0.633	8e-53
194753578	2283	dscam [Drosophila ananassae] gi|19062038	0.982	0.071	0.613	1e-52
357628590	3282	dscam [Danaus plexippus]	0.958	0.048	0.613	1e-52

>gi|198456023|ref|XP_001360206.2| dscam [Drosophila pseudoobscura pseudoobscura] gi|198135489|gb|EAL24780.2| dscam [Drosophila pseudoobscura pseudoobscura]

 Score =  234 bits (597), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 109/162 (67%), Positives = 135/162 (83%), Gaps = 5/162 (3%)

Query: 8   VISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVVSQS 67
           V+ Q++E+QVYD +VIKGNAA+FKC  PSFV+DH+++  W DT+G  Y       VV QS
Sbjct: 687 VVKQFFESQVYDEYVIKGNAAIFKCQTPSFVADHIEITDWIDTEGEVYT--KNITVVPQS 744

Query: 68  YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFV--DMTESTDGKYLVL 125
           YTVN+MDE +L+GNSA++KCHIPSFVAD++ V+SW+ D+  +++   D+T S DGKYLVL
Sbjct: 745 YTVNVMDESILRGNSAIMKCHIPSFVADFIVVDSWVEDEERDIYPQEDITAS-DGKYLVL 803

Query: 126 PSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
           PSGELHIR+VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Sbjct: 804 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 845

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195581170|ref|XP_002080407.1| GD10266 [Drosophila simulans] gi|194192416|gb|EDX05992.1| GD10266 [Drosophila simulans]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 110/162 (67%), Positives = 134/162 (82%), Gaps = 5/162 (3%)

Query: 8   VISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVVSQS 67
           V+ Q++E+QVYD +VIKGNAA+FKC  PSFV+DH+D+  W DT+G  +       VV QS
Sbjct: 744 VVKQFFESQVYDEYVIKGNAAIFKCQTPSFVADHIDITDWIDTEGEVFT--KNITVVPQS 801

Query: 68  YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFV--DMTESTDGKYLVL 125
           YTVN+MDE +L+GNSA+LKCHIPSFVAD++ V+SW+ D+   ++   D+ ES DGKYLVL
Sbjct: 802 YTVNVMDESILRGNSAILKCHIPSFVADFIVVDSWVEDEERVIYPQEDIAES-DGKYLVL 860

Query: 126 PSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
           PSGELHIR+VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Sbjct: 861 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 902

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195382125|ref|XP_002049781.1| dscam [Drosophila virilis] gi|194144578|gb|EDW60974.1| dscam [Drosophila virilis]

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 103/161 (63%), Positives = 131/161 (81%), Gaps = 2/161 (1%)

Query: 8   VISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVVSQS 67
           V+SQ+YE  ++  FVI+GN+A+ KC++PSFV+D ++V+SW  TD  +    + ++VVSQ 
Sbjct: 192 VVSQHYEEDIHKAFVIRGNSAILKCDIPSFVADFVNVISW-HTDQEENFYPDTEYVVSQF 250

Query: 68  YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVD-MTESTDGKYLVLP 126
           Y     +E+V+KGN+AV+KC IPSFVAD+V VE+W+ DQG EL+ D  T + DGKYLVLP
Sbjct: 251 YITEAENEYVIKGNAAVVKCKIPSFVADFVQVEAWVDDQGVELWRDNSTGAYDGKYLVLP 310

Query: 127 SGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
           SGELHIR+VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Sbjct: 311 SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 351

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195123131|ref|XP_002006063.1| dscam [Drosophila mojavensis] gi|193911131|gb|EDW09998.1| dscam [Drosophila mojavensis]

 Score =  214 bits (545), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 102/161 (63%), Positives = 131/161 (81%), Gaps = 2/161 (1%)

Query: 8   VISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVVSQS 67
           V+SQ+YE  ++  FVI+GN+A+ KC++PSFV+D ++V+SW  TD  +    + ++VVSQ 
Sbjct: 190 VVSQHYEEDIHKAFVIRGNSAILKCDIPSFVADFVNVISW-HTDQEENFYPDTEYVVSQF 248

Query: 68  YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVD-MTESTDGKYLVLP 126
           Y     +E+V+KGN+AV+KC IPSFVAD+V +E+W+ DQG EL+ D  T + DGKYLVLP
Sbjct: 249 YITEAENEYVIKGNAAVVKCKIPSFVADFVQIEAWVDDQGVELWRDNSTGAYDGKYLVLP 308

Query: 127 SGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
           SGELHIR+VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Sbjct: 309 SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 349

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195025469|ref|XP_001986065.1| GH20743 [Drosophila grimshawi] gi|193902065|gb|EDW00932.1| GH20743 [Drosophila grimshawi]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 101/161 (62%), Positives = 131/161 (81%), Gaps = 2/161 (1%)

Query: 8   VISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVVSQS 67
           V+SQ+YE  ++  FVI+GN+A+ KC++PSFV+D ++V+SW  TD  +    + ++VVSQ 
Sbjct: 190 VVSQHYEEDIHKAFVIRGNSAILKCDIPSFVADFVNVISW-HTDQEENFYPDTEYVVSQF 248

Query: 68  YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTEST-DGKYLVLP 126
           Y     +E+V+KGN+AV+KC IPSFVAD+V +E+W+ DQG EL+ + + S  DGKYLVLP
Sbjct: 249 YITEAENEYVIKGNAAVVKCKIPSFVADFVQIEAWVDDQGVELWRENSTSAYDGKYLVLP 308

Query: 127 SGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
           SGELHIR+VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Sbjct: 309 SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 349

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195431192|ref|XP_002063632.1| GK22019 [Drosophila willistoni] gi|194159717|gb|EDW74618.1| GK22019 [Drosophila willistoni]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/168 (62%), Positives = 132/168 (78%), Gaps = 4/168 (2%)

Query: 3   FWPVA--VISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ 60
           F+P A  V++QYY+  V   +VI+GNAAV KC +PSFV+D + VVSW  TD  +  +   
Sbjct: 240 FYPDAEYVVAQYYDTDVNKAYVIRGNAAVLKCEIPSFVADFVSVVSW-HTDQNEDFLPGS 298

Query: 61  DFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVD-MTESTD 119
           ++VVSQ Y     +E+V+KGN+AV+KC IPSFVAD+V +E+W+ D+G EL+ +  T + D
Sbjct: 299 EYVVSQFYITEAENEYVIKGNAAVVKCKIPSFVADFVQIEAWVDDEGVELWCNNSTGAYD 358

Query: 120 GKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
           GKYLVLPSGELHIR+VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Sbjct: 359 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 406

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195332081|ref|XP_002032727.1| GM20804 [Drosophila sechellia] gi|194124697|gb|EDW46740.1| GM20804 [Drosophila sechellia]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 104/168 (61%), Positives = 132/168 (78%), Gaps = 4/168 (2%)

Query: 3   FWPVA--VISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ 60
           F+P    V++QYY+  V   +VI+GNAAV KC +PSFV+D + VVSW  TD  +  +   
Sbjct: 237 FYPGTEYVVAQYYDTDVNKAYVIRGNAAVLKCEIPSFVADFVSVVSW-HTDQNEDFLPGS 295

Query: 61  DFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVD-MTESTD 119
           ++VVSQ Y     +E+V+KGN+AV+KC IPSFVAD+V VE+W+ ++G EL+ +  T++ D
Sbjct: 296 EYVVSQFYITEAENEYVIKGNAAVVKCKIPSFVADFVQVEAWVDEEGMELWRNNATDAYD 355

Query: 120 GKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
           GKYLVLPSGELHIR+VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Sbjct: 356 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 403

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194863848|ref|XP_001970644.1| GG10759 [Drosophila erecta] gi|190662511|gb|EDV59703.1| GG10759 [Drosophila erecta]

 Score =  211 bits (537), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 102/161 (63%), Positives = 128/161 (79%), Gaps = 2/161 (1%)

Query: 8   VISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVVSQS 67
           V++QYY+  V   +VI+GNAAV KC +PSFV+D + VVSW  TD  +  +   ++VVSQ 
Sbjct: 242 VVAQYYDTDVNKAYVIRGNAAVLKCEIPSFVADFVSVVSW-HTDQNEDFLPGSEYVVSQF 300

Query: 68  YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVD-MTESTDGKYLVLP 126
           Y     +E+V+KGN+AV+KC IPSFVAD+V VE+W+ ++G EL+ +  T + DGKYLVLP
Sbjct: 301 YITEAENEYVIKGNAAVVKCKIPSFVADFVQVEAWVDEEGTELWRNNATNAYDGKYLVLP 360

Query: 127 SGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
           SGELHIR+VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Sbjct: 361 SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 401

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194753578|ref|XP_001959089.1| dscam [Drosophila ananassae] gi|190620387|gb|EDV35911.1| dscam [Drosophila ananassae]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 103/168 (61%), Positives = 132/168 (78%), Gaps = 4/168 (2%)

Query: 3   FWPVA--VISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ 60
           F+P    V++QYY+  V   +VI+GNAAV KC +PSFV+D ++VVSW  TD  +  +   
Sbjct: 237 FYPGTEYVVAQYYDTDVNKAYVIRGNAAVLKCEIPSFVADFVNVVSW-HTDQNEDFLPGS 295

Query: 61  DFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTEST-D 119
           ++VVSQ Y     +E+V+KGN+AV+KC IPSFVAD+V VE+W+ ++G +L+ +   S+ D
Sbjct: 296 EYVVSQFYITEAENEYVIKGNAAVVKCKIPSFVADFVQVEAWVDEEGTDLWRNNASSSYD 355

Query: 120 GKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
           GKYLVLPSGELHIR+VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Sbjct: 356 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 403

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357628590|gb|EHJ77866.1| dscam [Danaus plexippus]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 103/168 (61%), Positives = 132/168 (78%), Gaps = 8/168 (4%)

Query: 8   VISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSW---ADTDGGQYQID-NQDFV 63
           V+SQ Y+ + ++ +V++GNAA+ KC +PSFVS+++ V SW    D    + ++D + D V
Sbjct: 772 VVSQAYDVKFWEEYVLRGNAAILKCQIPSFVSEYVSVSSWIISEDEIEKEIKLDESTDLV 831

Query: 64  VSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTD---- 119
           VSQ+Y VN+M+E+VL+GN+A++KCHIPSFV++YV V SWI  +GEE      +S D    
Sbjct: 832 VSQAYAVNLMEEYVLRGNAAIVKCHIPSFVSEYVTVVSWIVSEGEEEVEIKPDSNDKLDD 891

Query: 120 GKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
           GKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Sbjct: 892 GKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 939

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
FB|FBgn0033159	2037	Dscam "Down syndrome cell adhe	0.616	0.050	0.752	1.2e-36
FB|FBgn0263219	1918	Dscam4 "Down syndrome cell adh	0.616	0.053	0.485	2.7e-23
MGI|MGI:1196281	2013	Dscam "Down syndrome cell adhe	0.862	0.071	0.347	1.5e-14
RGD|619992	2013	Dscam "Down syndrome cell adhe	0.862	0.071	0.347	1.5e-14
UNIPROTKB|O60469	2012	DSCAM "Down syndrome cell adhe	0.862	0.071	0.341	1.9e-14
UNIPROTKB|F1NY98	1994	DSCAM "Uncharacterized protein	0.862	0.072	0.341	1.1e-13
MGI|MGI:2150309	2053	Dscaml1 "Down syndrome cell ad	0.694	0.056	0.365	3.7e-13
RGD|1304887	2111	Dscaml1 "Down syndrome cell ad	0.694	0.054	0.365	3.8e-13
UNIPROTKB|E1BZF3	1870	E1BZF3 "Uncharacterized protei	0.694	0.062	0.357	4.3e-13
UNIPROTKB|Q8TD84	2053	DSCAML1 "Down syndrome cell ad	0.694	0.056	0.357	1.6e-12

FB|FBgn0033159 Dscam "Down syndrome cell adhesion molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 410 (149.4 bits), Expect = 1.2e-36, P = 1.2e-36
 Identities = 79/105 (75%), Positives = 90/105 (85%)

Query:    63 VVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY 122
             VV+Q Y   IM E+V++GN+AVLKC IPSFVAD+V VESWI D+G  L    +++ DGKY
Sbjct:   136 VVNQFYEAEIMTEYVIRGNAAVLKCSIPSFVADFVRVESWIDDEGNVL--SFSDNYDGKY 193

Query:   123 LVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
             LVLPSGELHIR+VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Sbjct:   194 LVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 238

GO:0005887 "integral to plasma membrane" evidence=ISM;ISS

GO:0007411 "axon guidance" evidence=IGI;IMP;TAS

GO:0008046 "axon guidance receptor activity" evidence=IMP;NAS

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0051635 "bacterial cell surface binding" evidence=IDA

GO:0048666 "neuron development" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=IMP;IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0021551 "central nervous system morphogenesis" evidence=IMP

GO:0048846 "axon extension involved in axon guidance" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

FB|FBgn0263219 Dscam4 "Down syndrome cell adhesion molecule 4" [Drosophila melanogaster (taxid:7227)]

 Score = 284 (105.0 bits), Expect = 2.7e-23, P = 2.7e-23
 Identities = 51/105 (48%), Positives = 76/105 (72%)

Query:    63 VVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY 122
             VV+Q Y V + DE+V+ GN+AVLKC +PS+++++V V +W+ D G  L+ + T+   GKY
Sbjct:   124 VVNQKYAVQVHDEYVMTGNTAVLKCQVPSYMSEFVLVTAWVQDTGMHLYPN-TD-IGGKY 181

Query:   123 LVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
              VL +GEL+I + GP D YKSY CRT +RLTGE ++S   GR+++
Sbjct:   182 TVLSNGELYINNAGPNDAYKSYTCRTVNRLTGEVQISTYPGRIIV 226

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

MGI|MGI:1196281 Dscam "Down syndrome cell adhesion molecule" [Mus musculus (taxid:10090)]

 Score = 202 (76.2 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 56/161 (34%), Positives = 83/161 (51%)

Query:    16 QVYDVFVIK-----GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDF----VVSQ 66
             ++YDV  I+     G   +F     SF +   D   +   +    +I +QD     V+ +
Sbjct:    65 EIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIRSQDVHIKAVLRE 124

Query:    67 SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP 126
              YTV + D+  ++GN AV KC IPS V  YV V SW  D      V +   +  ++L+  
Sbjct:   125 PYTVRVEDQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDT-----VSLVSGS--RFLITS 177

Query:   127 SGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
             +G L+I+DV  EDG  +Y+C T+HR TGETR S    RL +
Sbjct:   178 TGALYIKDVQNEDGLYNYRCITRHRYTGETRQS-NSARLFV 217

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IMP

GO:0007399 "nervous system development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0042327 "positive regulation of phosphorylation" evidence=ISO

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IDA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IMP

GO:0070593 "dendrite self-avoidance" evidence=IMP

RGD|619992 Dscam "Down syndrome cell adhesion molecule" [Rattus norvegicus (taxid:10116)]

 Score = 202 (76.2 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 56/161 (34%), Positives = 83/161 (51%)

Query:    16 QVYDVFVIK-----GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDF----VVSQ 66
             ++YDV  I+     G   +F     SF +   D   +   +    +I +QD     V+ +
Sbjct:    65 EIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIRSQDVHIKAVLRE 124

Query:    67 SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP 126
              YTV + D+  ++GN AV KC IPS V  YV V SW  D      V +   +  ++L+  
Sbjct:   125 PYTVRVEDQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDT-----VSLVSGS--RFLITS 177

Query:   127 SGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
             +G L+I+DV  EDG  +Y+C T+HR TGETR S    RL +
Sbjct:   178 TGALYIKDVQNEDGLYNYRCITRHRYTGETRQS-NSARLFV 217

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=ISO;ISS

GO:0007626 "locomotory behavior" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=ISO;ISS

GO:0030426 "growth cone" evidence=ISO;ISS

GO:0042327 "positive regulation of phosphorylation" evidence=ISO;ISS

GO:0048813 "dendrite morphogenesis" evidence=ISO

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IMP

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=ISO

GO:0070593 "dendrite self-avoidance" evidence=ISO;ISS

UNIPROTKB|O60469 DSCAM "Down syndrome cell adhesion molecule" [Homo sapiens (taxid:9606)]

 Score = 201 (75.8 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 55/161 (34%), Positives = 83/161 (51%)

Query:    16 QVYDVFVIK-----GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDF----VVSQ 66
             ++YDV  I+     G   +F     SF +   D   +   +    +I +QD     V+ +
Sbjct:    65 EIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIRSQDVHIKAVLRE 124

Query:    67 SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP 126
              YTV + D+  ++GN AV KC IPS V  Y+ V SW  D      V +   +  ++L+  
Sbjct:   125 PYTVRVEDQKTMRGNVAVFKCIIPSSVEAYITVVSWEKDT-----VSLVSGS--RFLITS 177

Query:   127 SGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
             +G L+I+DV  EDG  +Y+C T+HR TGETR S    RL +
Sbjct:   178 TGALYIKDVQNEDGLYNYRCITRHRYTGETRQS-NSARLFV 217

GO:0007155 "cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042327 "positive regulation of phosphorylation" evidence=IDA

GO:0007162 "negative regulation of cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS;TAS

GO:0030426 "growth cone" evidence=ISS

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=ISS

GO:0030424 "axon" evidence=ISS

GO:0016020 "membrane" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

UNIPROTKB|F1NY98 DSCAM "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 194 (73.4 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 55/161 (34%), Positives = 81/161 (50%)

Query:    16 QVYDVFVIK-----GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDF----VVSQ 66
             ++YDV  I+     G   +F     SF +   D   +   +    +I +QD     V+ +
Sbjct:    51 EIYDVPGIRHVHPNGTLQIFPFPPSSFNNLIHDNTYYCTAENPSGKIRSQDVHIKAVLRE 110

Query:    67 SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP 126
              YTV + D+  ++GN AV KC IPS V  Y+ V SW  D      V +      ++L+  
Sbjct:   111 PYTVRVEDQKAMRGNVAVFKCIIPSSVEAYITVVSWEKDT-----VSLVSGP--RFLITS 163

Query:   127 SGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
             +G L+I DV  EDG  +Y+C T+HR TGETR S    RL +
Sbjct:   164 TGALYILDVQNEDGLYNYRCITRHRYTGETRQS-NSARLFV 203

GO:0005886 "plasma membrane" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0070593 "dendrite self-avoidance" evidence=IEA

MGI|MGI:2150309 Dscaml1 "Down syndrome cell adhesion molecule like 1" [Mus musculus (taxid:10090)]

 Score = 189 (71.6 bits), Expect = 3.7e-13, P = 3.7e-13
 Identities = 46/126 (36%), Positives = 69/126 (54%)

Query:    36 SFVSDHLDVVSWADTDGGQYQIDNQDF--VVSQSYTVNIMDEHVLKGNSAVLKCHIPSFV 93
             SF+ D+ D    A+   G+ +  N     V  + YTV + D+  ++GN AV KC IPS V
Sbjct:    94 SFIHDN-DYFCTAENAAGKIRSPNIRIKAVFREPYTVRVEDQRSMRGNVAVFKCLIPSSV 152

Query:    94 ADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT 153
              +YV+V SW  D      V +T   + ++ +   G L+I DV  ED   +Y+C T+H+ +
Sbjct:   153 QEYVSVVSWEKDT-----VSITP--ENRFFITSHGGLYISDVQKEDALSTYRCITQHKYS 205

Query:   154 GETRLS 159
             GETR S
Sbjct:   206 GETRQS 211

GO:0005886 "plasma membrane" evidence=ISA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=ISO;ISA

GO:0007162 "negative regulation of cell adhesion" evidence=IMP

GO:0007399 "nervous system development" evidence=IEA

GO:0007420 "brain development" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016338 "calcium-independent cell-cell adhesion" evidence=ISA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0048704 "embryonic skeletal system morphogenesis" evidence=ISO

GO:0070593 "dendrite self-avoidance" evidence=IMP

RGD|1304887 Dscaml1 "Down syndrome cell adhesion molecule-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 189 (71.6 bits), Expect = 3.8e-13, P = 3.8e-13
 Identities = 46/126 (36%), Positives = 69/126 (54%)

Query:    36 SFVSDHLDVVSWADTDGGQYQIDNQDF--VVSQSYTVNIMDEHVLKGNSAVLKCHIPSFV 93
             SF+ D+ D    A+   G+ +  N     V  + YTV + D+  ++GN AV KC IPS V
Sbjct:   152 SFIHDN-DYFCTAENAAGKIRSPNIRIKAVFREPYTVRVEDQRSMRGNVAVFKCLIPSSV 210

Query:    94 ADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT 153
              +YV+V SW  D      V +T   + ++ +   G L+I DV  ED   +Y+C T+H+ +
Sbjct:   211 QEYVSVVSWEKDT-----VSITP--ENRFFITSHGGLYISDVQKEDALSTYRCITQHKYS 263

Query:   154 GETRLS 159
             GETR S
Sbjct:   264 GETRQS 269

GO:0007156 "homophilic cell adhesion" evidence=IEA;ISO

GO:0007162 "negative regulation of cell adhesion" evidence=IEA;ISO

GO:0007420 "brain development" evidence=IEA;ISO

GO:0009986 "cell surface" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA;ISO

GO:0070593 "dendrite self-avoidance" evidence=IEA;ISO

UNIPROTKB|E1BZF3 E1BZF3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 188 (71.2 bits), Expect = 4.3e-13, P = 4.3e-13
 Identities = 45/126 (35%), Positives = 68/126 (53%)

Query:    36 SFVSDHLDVVSWADTDGGQYQIDN--QDFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFV 93
             SF+ D+ D    A+   G+ +  N     V  + YTV + D+  ++GN AV KC IPS V
Sbjct:    96 SFIHDN-DYFCTAENSAGKIRSPNIRVKAVFREPYTVRVEDQRSMRGNVAVFKCLIPSSV 154

Query:    94 ADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT 153
              +YV+V SW  D        ++   + ++ +   G L+I DV  ED   +Y+C TKH+ +
Sbjct:   155 QEYVSVVSWEKDT-------VSIIPENRFFITSYGGLYISDVQKEDALSTYRCITKHKYS 207

Query:   154 GETRLS 159
             GETR S
Sbjct:   208 GETRQS 213

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA

GO:0070593 "dendrite self-avoidance" evidence=IEA

UNIPROTKB|Q8TD84 DSCAML1 "Down syndrome cell adhesion molecule-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 183 (69.5 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 45/126 (35%), Positives = 68/126 (53%)

Query:    36 SFVSDHLDVVSWADTDGGQYQIDN--QDFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFV 93
             SF+ D+ D    A+   G+ +  N     V  + YTV + D+  ++GN AV KC IPS V
Sbjct:    94 SFIHDN-DYFCTAENAAGKIRSPNIRVKAVFREPYTVRVEDQRSMRGNVAVFKCLIPSSV 152

Query:    94 ADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT 153
              +YV+V SW  D        ++   + ++ +   G L+I DV  ED   +Y+C TKH+ +
Sbjct:   153 QEYVSVVSWEKDT-------VSIIPEHRFFITYHGGLYISDVQKEDALSTYRCITKHKYS 205

Query:   154 GETRLS 159
             GETR S
Sbjct:   206 GETRQS 211

GO:0016021 "integral to membrane" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0070593 "dendrite self-avoidance" evidence=IEA

GO:0007409 "axonogenesis" evidence=NAS

GO:0009986 "cell surface" evidence=IDA

GO:0009953 "dorsal/ventral pattern formation" evidence=NAS

GO:0007420 "brain development" evidence=IDA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IDA

GO:0007417 "central nervous system development" evidence=NAS

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0001709 "cell fate determination" evidence=NAS

GO:0005886 "plasma membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
KOG3513|consensus	1051		99.85
KOG3513|consensus	1051		99.8
KOG4221|consensus	1381		99.75
PHA02826	227	IL-1 receptor-like protein; Provisional	99.74
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.73
KOG4194|consensus	873		99.73
KOG4221|consensus	1381		99.73
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.7
KOG4222|consensus	1281		99.68
KOG4194|consensus	873		99.68
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.67
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.64
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.64
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.64
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.63
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.63
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.63
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.63
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.62
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.62
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.62
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.61
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.61
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.61
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.61
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.61
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.61
KOG4222|consensus	1281		99.61
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.6
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.6
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.6
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.59
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.59
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.59
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.58
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.58
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.57
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.57
PHA02785	326	IL-beta-binding protein; Provisional	99.57
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.56
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.56
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.56
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.55
PHA02785	326	IL-beta-binding protein; Provisional	99.55
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.55
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.55
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.55
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.55
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.54
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.53
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.53
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.53
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.53
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.53
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.52
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.52
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.52
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.51
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.51
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.51
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.51
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.51
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.51
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.5
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.5
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.5
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.5
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.49
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.49
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.49
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.49
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.49
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.48
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.48
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.47
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.47
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.47
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.46
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.46
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.46
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.45
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.45
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.45
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.44
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.43
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.43
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.43
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.41
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.4
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.39
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.37
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.35
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.35
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.34
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.3
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.3
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.27
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.25
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.25
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.22
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.19
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.16
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.14
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.14
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.14
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.13
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.12
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.09
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.07
smart00409	86	IG Immunoglobulin.	99.06
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.06
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	99.05
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	99.03
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.99
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.98
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.95
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.93
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.92
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.89
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.87
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.86
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.86
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.86
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.85
PHA02826	227	IL-1 receptor-like protein; Provisional	98.84
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.83
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.83
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.82
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.77
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.76
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.75
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.75
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.71
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.71
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.69
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.67
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.63
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.62
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.61
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.6
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	98.57
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.57
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.56
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.55
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.52
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.51
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	98.47
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.47
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.47
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.45
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.42
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.42
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.41
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.4
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.38
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	98.37
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.37
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	98.37
PHA03376	221	BARF1; Provisional	98.36
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	98.33
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.33
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.32
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.31
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.3
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.3
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.29
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.28
KOG1480|consensus	909		98.24
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.22
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.21
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.2
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.18
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.18
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	98.18
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.16
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.15
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.14
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.13
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.13
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	98.12
smart00406	81	IGv Immunoglobulin V-Type.	98.11
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	98.1
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.09
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.09
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.08
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	98.07
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.06
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.03
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.03
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	98.03
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	98.01
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.0
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	97.98
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.97
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	97.95
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	97.94
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	97.91
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	97.89
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	97.89
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	97.87
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.87
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	97.86
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	97.86
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	97.83
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	97.82
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	97.82
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	97.82
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	97.82
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	97.8
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	97.79
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	97.78
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	97.78
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	97.75
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	97.74
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	97.72
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	97.72
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	97.7
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	97.68
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	97.67
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	97.66
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	97.65
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	97.65
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.64
smart00407	75	IGc1 Immunoglobulin C-Type.	97.62
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.61
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	97.6
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	97.59
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	97.56
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	97.54
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.5
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	97.45
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.45
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	97.44
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.41
KOG3515|consensus	741		97.39
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	97.38
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	97.37
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	97.35
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.34
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	97.34
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	97.33
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	97.33
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	97.32
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	97.32
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	97.31
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.3
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.3
PHA03376	221	BARF1; Provisional	97.21
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.21
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	97.17
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	97.16
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	97.16
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	97.15
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.13
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	97.11
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	97.09
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	97.07
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	97.04
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	97.04
smart00408	63	IGc2 Immunoglobulin C-2 Type.	97.01
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	97.0
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	96.99
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	96.99
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	96.99
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	96.98
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	96.97
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	96.97
PHA02633	63	hypothetical protein; Provisional	96.92
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	96.9
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	96.89
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	96.86
PF00047	64	ig: Immunoglobulin domain The Prosite family only	96.77
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.75
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.73
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	96.63
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	96.63
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	96.62
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	96.61
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	96.58
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.55
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	96.51
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	96.49
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	96.45
PHA02982	251	hypothetical protein; Provisional	96.36
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.35
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	96.32
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	96.31
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	96.27
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.17
smart00409	86	IG Immunoglobulin.	96.16
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	96.16
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.12
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	96.02
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	95.97
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	95.95
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	95.94
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	95.9
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	95.88
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	95.8
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	95.79
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	95.79
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	95.63
KOG4597|consensus	560		95.59
KOG3515|consensus	741		95.37
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	95.34
cd05770	93	IgC_beta2m Class I major histocompatibility comple	95.13
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	95.06
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	94.51
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	94.47
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	94.0
PHA03042	286	CD47-like protein; Provisional	93.82
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	93.81
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	93.62
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	93.48
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	93.44
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	93.23
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	93.21
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	92.76
smart00407	75	IGc1 Immunoglobulin C-Type.	92.66
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	92.53
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	92.4
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	92.37
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	91.94
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	91.68
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	91.44
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	91.41
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	90.93
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	90.72
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	90.64
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	89.95
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	89.69
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	89.14
PHA02865	338	MHC-like TNF binding protein; Provisional	88.9
PHA02914	500	Immunoglobulin-like domain protein; Provisional	88.67
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	87.8
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	87.78
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	86.81
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	86.76
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	86.65
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	85.98
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	85.86
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	85.86
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	85.44
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	85.1
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	85.07
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	84.81
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	84.68
PHA02865	338	MHC-like TNF binding protein; Provisional	84.64
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	84.63
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	84.62
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	84.25
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	83.84
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	82.14
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	82.06
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	81.24
PHA02987	189	Ig domain OX-2-like protein; Provisional	80.74
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	80.24

>KOG3513|consensus

Probab=99.85  E-value=1e-20  Score=170.64  Aligned_cols=136  Identities=18%  Similarity=0.332  Sum_probs=109.9

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC---ce-----E--------EEeeeEEEecC
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ---DF-----V--------VSQSYTVNIMD   74 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~---~~-----v--------~~g~y~c~~~~   74 (167)
                      +++...++|+.+..|+.+.|+|.|.+.|.+   .++|+|++ .++.+...   ..     +        .+|.|+|.++|
T Consensus       332 P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p---~v~WlkNg-~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~N  407 (1051)
T KOG3513|consen  332 PYWLQKPQDTEADTGSNVTLECKASGKPNP---TVKWLKNG-EPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAEN  407 (1051)
T ss_pred             chhhcccceeEecCCCCeEEEEEecCCCCC---ceEEeeCC-eecCccCCCcceEEeCCEEEEEecccccCeEEEeeeec
Confidence            347889999999999999999999988864   89999994 34443222   11     1        27999998855


Q ss_pred             ----------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc
Q psy12724         75 ----------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP  126 (167)
Q Consensus        75 ----------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~  126 (167)
                                                  ..+..|.++.+.|.+.+   .|.|.++|+|++. .+.      .++||.+++
T Consensus       408 k~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~a---sP~p~~~W~k~~~-~~~------~~~r~~i~e  477 (1051)
T KOG3513|consen  408 KYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFA---SPKPKVSWLKGGE-KLL------QSGRIRILE  477 (1051)
T ss_pred             ccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCC---CCcceEEEEcCCc-ccc------cCceEEECC
Confidence                                        24578999999999985   4999999999984 332      478999999


Q ss_pred             CCeEEEeecCcCCCCcceEEEeeecC---cceEEEeee
Q psy12724        127 SGELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSAT  161 (167)
Q Consensus       127 ~g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~~  161 (167)
                      ||+|.|+|++.+|+ |.|+|.|+|.+   ..++.|.+.
T Consensus       478 dGtL~I~n~t~~Da-G~YtC~A~N~~G~a~~~~~L~Vk  514 (1051)
T KOG3513|consen  478 DGTLEISNVTRSDA-GKYTCVAENKLGKAESTGNLIVK  514 (1051)
T ss_pred             CCcEEecccCcccC-cEEEEEEEcccCccceEEEEEEe
Confidence            99999999999999 99999999988   445566653

>KOG3513|consensus

Probab=99.80  E-value=4.1e-19  Score=160.41  Aligned_cols=132  Identities=19%  Similarity=0.328  Sum_probs=101.7

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC----ceE---------EEeeeEEEecC---------
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ----DFV---------VSQSYTVNIMD---------   74 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~----~~v---------~~g~y~c~~~~---------   74 (167)
                      |+++...+|+++.|+|.|.|.|-   |.|.|.|.||..+.....    ..+         ..|.|+|.++|         
T Consensus       248 p~~~~a~~G~~v~LECfA~G~P~---P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~  324 (1051)
T KOG3513|consen  248 PETETALKGQSVKLECFALGNPT---PQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSG  324 (1051)
T ss_pred             CCcccccCCCeEEEEEEecCCCC---CcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeE
Confidence            34788999999999999999885   589999999965542111    111         27999998854         


Q ss_pred             ----------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcC
Q psy12724         75 ----------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPE  138 (167)
Q Consensus        75 ----------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~  138 (167)
                                      ..+..|+++.|.|.+.   |.|.|.++|+||+ .++.+.   +...|+.+ .+|.|.|++++.+
T Consensus       325 ~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~---g~P~p~v~WlkNg-~pl~~~---~r~~~~~i-~~g~L~is~v~~~  396 (1051)
T KOG3513|consen  325 HVTVYAPPYWLQKPQDTEADTGSNVTLECKAS---GKPNPTVKWLKNG-EPLEPA---ERDPRYKI-DDGTLIISNVQES  396 (1051)
T ss_pred             EEEEecCchhhcccceeEecCCCCeEEEEEec---CCCCCceEEeeCC-eecCcc---CCCcceEE-eCCEEEEEecccc
Confidence                            4456899999999998   5699999999998 677532   12334655 5799999999999


Q ss_pred             CCCcceEEEeeecC---cceEEEee
Q psy12724        139 DGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       139 D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                      |+ |+|+|.|+|+.   .+.+.|.+
T Consensus       397 ds-g~YQC~A~Nk~G~i~anA~L~V  420 (1051)
T KOG3513|consen  397 DS-GVYQCIAENKYGTIYANAELKV  420 (1051)
T ss_pred             cC-eEEEeeeecccceEeeeeEEEE
Confidence            99 99999999987   33444444

>KOG4221|consensus

Probab=99.75  E-value=2.8e-17  Score=149.00  Aligned_cols=136  Identities=18%  Similarity=0.389  Sum_probs=105.0

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE---------------EEeeeEEEec---
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV---------------VSQSYTVNIM---   73 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v---------------~~g~y~c~~~---   73 (167)
                      .|..+++++++..|+++.|+|.+-+.+   +|.+.|+|++. ++. ...+.+               ..|.|+|.+.   
T Consensus       142 ~f~~~~~~~t~~~g~ta~f~c~vn~e~---~p~i~w~kn~~-pl~-~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~  216 (1381)
T KOG4221|consen  142 DFALQPESTTLLYGQTALFSCEVNAEP---VPTIMWLKNDQ-PLP-LDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGA  216 (1381)
T ss_pred             ccccCccceeEecCCcEEEEEEEcCcc---CceeEEecccc-ccc-CCCcEEEcCCCcEEecccccCCCceEEEEEecCC
Confidence            499999999999999999999997744   56899999976 222 112211               2799999863   


Q ss_pred             -----------------------------CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE
Q psy12724         74 -----------------------------DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV  124 (167)
Q Consensus        74 -----------------------------~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~  124 (167)
                                                   +..+.+|++++|+|.+.+.   |+|.+.|+||+ +.|.-     .+.|+..
T Consensus       217 ~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~---p~p~v~Wlrng-~~i~~-----ds~rivl  287 (1381)
T KOG4221|consen  217 SQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGV---PKPSVKWLRNG-EKISV-----DSYRIVL  287 (1381)
T ss_pred             cCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCC---CCCceEEeeCC-eeeee-----cceEEEE
Confidence                                         2356789999999999854   99999999987 56642     3457777


Q ss_pred             ccCCeEEEeecCcCCCCcceEEEeeecC-----cceEEEeeeC
Q psy12724        125 LPSGELHIRDVGPEDGYKSYQCRTKHRL-----TGETRLSATK  162 (167)
Q Consensus       125 ~~~g~L~I~~v~~~D~~G~Y~C~a~n~~-----~~~~~l~~~~  162 (167)
                      ...++|.|++++..|+ |.|+|.|.|..     +++.++.+-|
T Consensus       288 ~g~~slliS~a~~~dS-g~YtC~Atn~~D~idasaev~V~a~P  329 (1381)
T KOG4221|consen  288 VGGSSLLISNATDDDS-GKYTCRATNTNDSIDASAEVTVLAPP  329 (1381)
T ss_pred             ecccceEEeccccccC-ceEEEEecCCCcccccceEEEEEcCC
Confidence            7788999999999999 99999999954     4444444433

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.74  E-value=7.7e-17  Score=126.45  Aligned_cols=129  Identities=16%  Similarity=0.255  Sum_probs=91.4

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCC--------cceeeEEeeCCCceeeec---------------CCc--eE-------
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSD--------HLDVVSWADTDGGQYQID---------------NQD--FV-------   63 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~--------~~~~i~W~k~~~~~~~~~---------------~~~--~v-------   63 (167)
                      +.....|.+|+++.|.|.+.+.+.+        .-..+.|.|++...+..+               +++  .+       
T Consensus        28 ~~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~  107 (227)
T PHA02826         28 DLTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVIN  107 (227)
T ss_pred             CcceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCCh
Confidence            3467889999999999998764421        123699999975322211               011  11       


Q ss_pred             -EEeeeEEEecC-------------------eEEEeCCcEEEEeeeCCcc--CCcceeEEEEeCCCeeeEEeeeecCCce
Q psy12724         64 -VSQSYTVNIMD-------------------EHVLKGNSAVLKCHIPSFV--ADYVAVESWISDQGEELFVDMTESTDGK  121 (167)
Q Consensus        64 -~~g~y~c~~~~-------------------~~v~~G~~a~l~C~~~~~~--~~p~p~i~W~k~~~~~l~~~~~~~~~~r  121 (167)
                       .+|.|+|.+.+                   ..+.+|+++.|.|.+.+..  +.|.|.++|+||+ ..+.      .++|
T Consensus       108 ~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng-~~l~------~~~r  180 (227)
T PHA02826        108 IDEGIYICTISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNG-NIVL------YTDR  180 (227)
T ss_pred             HHCEEEEEEEEECCcceEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECC-EECC------CCCC
Confidence             27999999854                   2345799999999985321  2367899999997 5653      2456


Q ss_pred             EEEccC-CeEEEeecCcCCCCcceEEEeeecC
Q psy12724        122 YLVLPS-GELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       122 ~~~~~~-g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.+..+ +.|.|.+++.+|+ |.|+|.|+...
T Consensus       181 ~~~~~~~~~L~I~~V~~~Ds-G~YtC~a~~~~  211 (227)
T PHA02826        181 IQLRNNNSTLVIKSATHDDS-GIYTCNLRFNK  211 (227)
T ss_pred             EEEeCCCCEEEECcCCHHhC-EEEEEEEEEeE
Confidence            665544 5899999999999 99999999864

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.73  E-value=1.2e-17  Score=108.98  Aligned_cols=62  Identities=21%  Similarity=0.402  Sum_probs=54.9

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |+++.|+|.+.+   .|.|.++|+|++ ..+.      .+.|+.+.++|.|.|.+++.+|+ |.|+|.|+|..
T Consensus         1 G~~~~l~C~~~g---~P~p~v~W~k~~-~~l~------~~~r~~~~~~g~L~I~~v~~~D~-G~Y~C~A~N~~   62 (73)
T cd05852           1 GGRVIIECKPKA---APKPKFSWSKGT-ELLV------NNSRISIWDDGSLEILNITKLDE-GSYTCFAENNR   62 (73)
T ss_pred             CCeEEEEEecce---eCCCEEEEEeCC-Eecc------cCCCEEEcCCCEEEECcCChhHC-EEEEEEEECCC
Confidence            789999999984   599999999987 4543      35789888999999999999998 99999999988

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>KOG4194|consensus

Probab=99.73  E-value=1.1e-17  Score=143.80  Aligned_cols=141  Identities=19%  Similarity=0.323  Sum_probs=106.4

Q ss_pred             eeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee--------------cCC---c-------eE--
Q psy12724         10 SQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI--------------DNQ---D-------FV--   63 (167)
Q Consensus        10 ~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~--------------~~~---~-------~v--   63 (167)
                      .++...+|+++.+..|..+.|.|.|.+....++ .+.|.+|.. ....              ++.   +       ++  
T Consensus       503 kpqI~~qPe~~~al~g~nirftC~a~sssaspl-si~WR~dne-vq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~n  580 (873)
T KOG4194|consen  503 KPQIVTQPETVSALIGENIRFTCNAYSSSASPL-SIEWRKDNE-VQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDN  580 (873)
T ss_pred             CcceecCchHhhhhhccceEEEEEeccCCCCCc-eeEeeeccc-cCcccchhcchhhhhhhccCccchhhhhhheeeeee
Confidence            345678899999999999999999988655543 699999854 1111              110   0       01  


Q ss_pred             ----EEeeeEEEec--------------------------CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEe
Q psy12724         64 ----VSQSYTVNIM--------------------------DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVD  113 (167)
Q Consensus        64 ----~~g~y~c~~~--------------------------~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~  113 (167)
                          ..|.|+|.+.                          |.+...|++|.|.|.|.|   +|.|.|.|.|+|+..+ |.
T Consensus       581 Vt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG---~P~PeIawqkdggtdF-PA  656 (873)
T KOG4194|consen  581 VTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATG---HPRPEIAWQKDGGTDF-PA  656 (873)
T ss_pred             eecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccC---CCCcceeehhcCCCCC-ch
Confidence                2799999874                          345678999999999994   5999999999986444 43


Q ss_pred             eeecCCceEEEcc-CCeEEEeecCcCCCCcceEEEeeecC---cceEEEee
Q psy12724        114 MTESTDGKYLVLP-SGELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       114 ~~~~~~~r~~~~~-~g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                      .   ...|.++.+ +....|.||..+|+ |.|+|.|.|.+   ++.+.|++
T Consensus       657 A---~eRRl~Vmpedd~f~Itnvk~eD~-GiYtC~A~n~AG~isanAtL~V  703 (873)
T KOG4194|consen  657 A---RERRLHVMPEDDVFFITNVKIEDQ-GIYTCTAQNVAGQISANATLTV  703 (873)
T ss_pred             h---hhheeeecCCCCEEEEeccccccc-ceeEEeeeccccceeeceEEEE
Confidence            1   456677776 55799999999998 99999999987   55666666

>KOG4221|consensus

Probab=99.73  E-value=3.8e-17  Score=148.13  Aligned_cols=143  Identities=20%  Similarity=0.384  Sum_probs=113.5

Q ss_pred             EEEeeeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCce---------eeecCCce-----------EEE
Q psy12724          6 VAVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQ---------YQIDNQDF-----------VVS   65 (167)
Q Consensus         6 ~av~~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~---------~~~~~~~~-----------v~~   65 (167)
                      .+...-+|..+|.|.  ++|.++.|+|.+-..++ ..+.|.|.||+..+         +.+|++.+           +..
T Consensus        37 ~~~~~~~f~~ep~d~--~~~~svlLecs~~~~~~-~~~~i~wkkDg~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~e  113 (1381)
T KOG4221|consen   37 QANTPLQFLLEPSDA--MEGSSVLLECSAYAAGG-TSVKIEWKKDGSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDE  113 (1381)
T ss_pred             hccCcceEEeccccc--ccccceEEeccccccCC-CCeeEEEccCchhhhhhhhhHHhhccCCceeEeeecccccccccC
Confidence            455566788899966  99999999999877665 24689999885432         12344432           237


Q ss_pred             eeeEEEe---------------------------cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecC
Q psy12724         66 QSYTVNI---------------------------MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTEST  118 (167)
Q Consensus        66 g~y~c~~---------------------------~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~  118 (167)
                      |.|+|.+                           .++++..|++|.|+|.+.   +.|.|.+.|+||+ .++.      .
T Consensus       114 g~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn---~e~~p~i~w~kn~-~pl~------~  183 (1381)
T KOG4221|consen  114 GVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVN---AEPVPTIMWLKND-QPLP------L  183 (1381)
T ss_pred             ceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEc---CccCceeEEeccc-cccc------C
Confidence            9999975                           246788999999999998   4699999999998 4553      4


Q ss_pred             CceEEEccCCeEEEeecCcCCCCcceEEEeeecC----cceEEEeeeC
Q psy12724        119 DGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL----TGETRLSATK  162 (167)
Q Consensus       119 ~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~----~~~~~l~~~~  162 (167)
                      ++|+.++++|.|.|.+++++|. |.|+|.++|..    +.+++|++..
T Consensus       184 ~~r~i~lpsG~L~I~~~qp~d~-g~yrc~vt~g~~~r~S~~a~ltv~s  230 (1381)
T KOG4221|consen  184 DSRVIVLPSGALEISGLQPSDT-GEYRCVVTGGASQRTSNEAELTVLS  230 (1381)
T ss_pred             CCcEEEcCCCcEEecccccCCC-ceEEEEEecCCcCCccceeEEEecC
Confidence            6699999999999999999999 99999999977    6678888763

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.70  E-value=5.9e-17  Score=105.47  Aligned_cols=63  Identities=27%  Similarity=0.470  Sum_probs=54.3

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +|+++.|.|.+.   |+|.|.++|+|++ ..+.      .+.++.+..+|.|.|.+++.+|+ |.|+|.|.|..
T Consensus         1 eG~~v~l~C~~~---g~P~p~i~W~k~g-~~~~------~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~A~N~~   63 (74)
T cd05745           1 EGQTVDFLCEAQ---GYPQPVIAWTKGG-SQLS------VDRRHLVLSSGTLRISRVALHDQ-GQYECQAVNIV   63 (74)
T ss_pred             CCCeEEEEeECC---EecCCEEEEEECC-EECC------CCCCeEEccCCeEEEeeCCHHhC-EEEEEEEEeCC
Confidence            589999999998   5599999999997 4542      24567677889999999999998 99999999987

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>KOG4222|consensus

Probab=99.68  E-value=9.6e-17  Score=144.90  Aligned_cols=137  Identities=22%  Similarity=0.351  Sum_probs=105.2

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceee----------ecCCceE-----------EEeeeEEE
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ----------IDNQDFV-----------VSQSYTVN   71 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~----------~~~~~~v-----------~~g~y~c~   71 (167)
                      ...+|.|+.|..|..|.|.|.|++.|.+   +|.|+|++...+.          +++...+           ..|.|.|.
T Consensus        34 iiehp~d~vvs~~~patlnc~asG~ppP---ti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cv  110 (1281)
T KOG4222|consen   34 IIEHPHDLVVSKGEPATLNCKASGDPPP---TIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCV  110 (1281)
T ss_pred             eEecchhhhccCCCCceeecCCCCCCCC---ceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEee
Confidence            5578999999999999999999999764   8999999654332          1111111           25899998


Q ss_pred             ecC---------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE
Q psy12724         72 IMD---------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV  124 (167)
Q Consensus        72 ~~~---------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~  124 (167)
                      +.+                           ..+..|+.++|+|.-+.  +.|.|.++|.||+ .++..    ....++.+
T Consensus       111 asn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~--ghpeptvSw~Kdg-~pl~~----~~~~~~~l  183 (1281)
T KOG4222|consen  111 ASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPR--GHPEPTVSWVKDG-KPLDH----YDVPIIAL  183 (1281)
T ss_pred             ecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCC--CCCCCcceeecCC-Ccccc----ccceeEEE
Confidence            643                           34578999999999764  6799999999998 45532    13456777


Q ss_pred             ccCCeEEEeecCcCCCCcceEEEeeecC----cceEEEee
Q psy12724        125 LPSGELHIRDVGPEDGYKSYQCRTKHRL----TGETRLSA  160 (167)
Q Consensus       125 ~~~g~L~I~~v~~~D~~G~Y~C~a~n~~----~~~~~l~~  160 (167)
                      .++|.|.|.|++.+|+ |+|.|+|.|.+    +.-++|++
T Consensus       184 isgG~LlIsnvrksD~-GtY~CVatNmvG~ReS~~A~lsv  222 (1281)
T KOG4222|consen  184 ISGGNLLISNVRKSDE-GTYACVATNMVGERESIPARLSV  222 (1281)
T ss_pred             ecCCcEEEeccccCCC-ceeeeeecccccccccccceeee
Confidence            7899999999999999 99999999987    44445554

>KOG4194|consensus

Probab=99.68  E-value=2.4e-16  Score=135.66  Aligned_cols=130  Identities=17%  Similarity=0.335  Sum_probs=102.8

Q ss_pred             eeeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc--eE---------------EEeeeEEE
Q psy12724          9 ISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD--FV---------------VSQSYTVN   71 (167)
Q Consensus         9 ~~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~--~v---------------~~g~y~c~   71 (167)
                      +.+.|...|+|.+...|+.|.|+|.|.|.|.|   .|+|.|++|..++....|  +|               .+|.|+|.
T Consensus       611 ~~PsFtktP~dltl~tg~mArl~CaAtG~P~P---eIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~  687 (873)
T KOG4194|consen  611 QAPSFTKTPEDLTLRTGQMARLECAATGHPRP---EIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCT  687 (873)
T ss_pred             ccCccccCcccceeecccceeeeeeccCCCCc---ceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEe
Confidence            45679999999999999999999999999875   799999998766542222  22               27999998


Q ss_pred             ec-------------------------CeEEEeCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEeeeecCCceEEEc
Q psy12724         72 IM-------------------------DEHVLKGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVDMTESTDGKYLVL  125 (167)
Q Consensus        72 ~~-------------------------~~~v~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~~~~~~~r~~~~  125 (167)
                      ++                         ++.|..|+++.|+|.+.+.   |. |.+.|+|++ .++.-      ..|.+..
T Consensus       688 A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~---~a~pr~~W~k~d-~pil~------t~rh~f~  757 (873)
T KOG4194|consen  688 AQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGA---PADPRLEWFKED-KPILI------TERHTFP  757 (873)
T ss_pred             eeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCC---CCCccccccCCC-CceEE------eecccCC
Confidence            73                         4678899999999999853   54 889999998 46532      2333333


Q ss_pred             c-CCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        126 P-SGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       126 ~-~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      + |.-|.+.+...+|+ |.|+|...|..
T Consensus       758 d~dQllvv~~~~~~da-G~yTcem~~~~  784 (873)
T KOG4194|consen  758 DGDQLLVVKENLVEDA-GIYTCEMSNTL  784 (873)
T ss_pred             CCCeEEEEEehhhhhc-ceEEEEEEeec
Confidence            3 33689999999999 99999999987

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.67  E-value=6.3e-16  Score=104.08  Aligned_cols=74  Identities=24%  Similarity=0.428  Sum_probs=60.3

Q ss_pred             eeEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEE
Q psy12724         67 SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        67 ~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C  146 (167)
                      .+.....|..+.+|+++.|.|.+.   |+|.|.++|+|++ ..+.      ...++. ..++.|.|.+++.+|+ |.|+|
T Consensus         3 ~i~~~~~~~~~~~G~~v~l~C~~~---G~P~P~v~W~k~~-~~~~------~~~~~~-~~~~~L~I~~v~~~D~-G~Y~C   70 (88)
T cd05851           3 DINVKFKDTYALKGQNVTLECFAL---GNPVPVIRWRKIL-EPMP------ATAEIS-MSGAVLKIFNIQPEDE-GTYEC   70 (88)
T ss_pred             ceEEccccEEEeCCCcEEEEEEec---ccCCCEEEEEECC-cCCC------CCCEEe-cCCCEEEECcCChhhC-EEEEE
Confidence            355566788999999999999998   5699999999997 4442      233443 3467899999999998 99999


Q ss_pred             EeeecC
Q psy12724        147 RTKHRL  152 (167)
Q Consensus       147 ~a~n~~  152 (167)
                      .|.|..
T Consensus        71 ~A~N~~   76 (88)
T cd05851          71 EAENIK   76 (88)
T ss_pred             EEEcCC
Confidence            999998

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.64  E-value=2e-15  Score=100.33  Aligned_cols=72  Identities=25%  Similarity=0.448  Sum_probs=59.5

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      +.+..+.+|+++.|.|.+..  +.|.|.+.|+|++ ..+..     ...++.+..++.|.|.+++.+|+ |.|+|.|.|.
T Consensus         3 p~~~~~~~G~~v~l~C~~~~--g~p~p~i~W~k~g-~~~~~-----~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~   73 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPR--GHPEPTVSWRKDG-QPLNL-----DNERVRIVDDGNLLIAEARKSDE-GTYKCVATNM   73 (86)
T ss_pred             CccEEEeCCCCEEEEEECCC--CCCCCEEEEEECC-EECCC-----CCCCEEEccCCEEEEeECCcccC-EEEEEEEEec
Confidence            35678889999999999832  4589999999997 45532     24567777789999999999998 9999999998


Q ss_pred             C
Q psy12724        152 L  152 (167)
Q Consensus       152 ~  152 (167)
                      .
T Consensus        74 ~   74 (86)
T cd05724          74 V   74 (86)
T ss_pred             c
Confidence            7

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.64  E-value=9.7e-16  Score=99.36  Aligned_cols=62  Identities=24%  Similarity=0.464  Sum_probs=54.1

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |+++.|.|.+.   |.|.|.++|+|++ ..+.      .+.|+.+.+++.|.|.+++.+|+ |.|+|.|.|.+
T Consensus         1 G~~v~L~C~~~---g~P~p~v~W~k~~-~~~~------~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~N~~   62 (73)
T cd04969           1 GGDVIIECKPK---AAPKPTISWSKGT-ELLT------NSSRICIWPDGSLEILNVTKSDE-GKYTCFAENFF   62 (73)
T ss_pred             CCeEEEEEeee---EcCCCEEEEEECC-EEcc------cCCCEEECCCCeEEEccCChhHC-EEEEEEEECCC
Confidence            78999999997   4599999999997 4553      35678888889999999999998 99999999998

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.64  E-value=7.5e-16  Score=100.97  Aligned_cols=60  Identities=20%  Similarity=0.303  Sum_probs=48.9

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC--C--eEEEeecCcCCCCcceEEEeeecC
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS--G--ELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~--g--~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |.|+|.+.   |.|.|.|+|+||+ ..+..     .+.|+.+..+  |  .|.|++++.+|+ |.|+|.|.|..
T Consensus         1 v~l~C~v~---G~P~P~i~W~k~~-~~i~~-----~~~r~~~~~~~~g~~~L~I~~~~~~D~-G~Y~C~A~N~~   64 (75)
T cd05892           1 VKLECQIS---AIPPPKIFWKRNN-EMVQY-----NTDRISLYQDNSGRVTLLIKNVNKKDA-GWYTVSAVNEA   64 (75)
T ss_pred             CEEEEEEE---ecCCCeEEEEECC-EECcC-----CCCeEEEEEcCCCcEEEEECCCChhhC-EEEEEEEEcCc
Confidence            57999998   4599999999997 55532     2457776543  3  699999999999 99999999988

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.63  E-value=1.6e-15  Score=103.68  Aligned_cols=79  Identities=19%  Similarity=0.276  Sum_probs=64.6

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCc-ceEEEeeec
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYK-SYQCRTKHR  151 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G-~Y~C~a~n~  151 (167)
                      ++..|.+|+.+.|.|..+.  |.|.|.|.|.+++. .+..     .++|+.+..+|.|+|++|+.+|+ | .|.|.|.|.
T Consensus        11 ~~v~V~eG~~~~L~C~pP~--g~P~P~i~W~~~~~-~~i~-----~~~Ri~~~~~GnL~fs~v~~~D~-g~~Y~C~a~~~   81 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPK--SAVPLRIYWMNSDL-LHIT-----QDERVSMGQNGNLYFANVEEQDS-HPDYICHAHFP   81 (95)
T ss_pred             ceeEEecCCCEEEEecCCC--CCCCCEEEEECCCC-cccc-----ccccEEECCCceEEEEEEehhhC-CCCeEEEEEcc
Confidence            3457889999999998643  56999999998763 3322     46788888899999999999999 9 899999999


Q ss_pred             CcceEEEee
Q psy12724        152 LTGETRLSA  160 (167)
Q Consensus       152 ~~~~~~l~~  160 (167)
                      .+..++++.
T Consensus        82 ~~~~~~~~~   90 (95)
T cd05845          82 GLRTIVQKE   90 (95)
T ss_pred             cccceEecC
Confidence            977766654

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.63  E-value=1.3e-15  Score=98.35  Aligned_cols=60  Identities=12%  Similarity=0.415  Sum_probs=51.2

Q ss_pred             cEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         82 SAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        82 ~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++.|.|.+.   |.|.|.++|+|++ ..+.      ...++.+..++.|.|.+++.+|+ |.|+|.|.|..
T Consensus         1 ~v~l~C~~~---G~P~p~v~W~k~g-~~~~------~~~~~~~~~~~~l~i~~v~~~D~-G~Y~C~A~N~~   60 (71)
T cd05723           1 DVIFECEVT---GKPTPTVKWVKNG-DMVI------PSDYFKIVKEHNLQVLGLVKSDE-GFYQCIAENDV   60 (71)
T ss_pred             CEEEEEEEE---EeCCCEEEEEECC-eECC------CCCCEEEEecCCEEEEcCCcccC-EEEEEEEEcCC
Confidence            488999998   4599999999998 4543      24567777788999999999998 99999999988

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.63  E-value=1.2e-15  Score=99.33  Aligned_cols=69  Identities=20%  Similarity=0.375  Sum_probs=55.3

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC----cceEEE
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL----TGETRL  158 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~----~~~~~l  158 (167)
                      |+|.|.+.   |.|.|.++|+|++ ..+..    ..+.|+....+|.|.|.+++.+|+ |.|+|.|.|..    +.++.|
T Consensus         1 a~l~C~~~---G~P~p~v~W~k~~-~~~~~----~~~~~~~~~~~g~L~i~~~~~~D~-G~Y~C~a~N~~G~~~s~~a~l   71 (74)
T cd05738           1 ATMLCAAS---GNPDPEITWFKDF-LPVDT----TSNGRIKQLRSGALQIENSEESDQ-GKYECVATNSAGTRYSAPANL   71 (74)
T ss_pred             CEEEEEEe---EecCCEEEEEECC-EECcc----CCCCCEEEcCCcEEEECCCChhhC-EEEEEEEECCCCceEcccEEE
Confidence            68999998   4599999999997 45532    135688888889999999999998 99999999988    344455


Q ss_pred             ee
Q psy12724        159 SA  160 (167)
Q Consensus       159 ~~  160 (167)
                      ++
T Consensus        72 ~v   73 (74)
T cd05738          72 YV   73 (74)
T ss_pred             EE
Confidence            43

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.63  E-value=1.4e-15  Score=99.34  Aligned_cols=64  Identities=27%  Similarity=0.478  Sum_probs=51.5

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |+++.|.|.+.   |+|.|.++|+||+ ..+...   ....++. ..++.|.|.+++.+|+ |.|+|.|.|..
T Consensus         1 G~~v~l~C~~~---G~P~p~i~W~k~g-~~i~~~---~~~~~~~-~~~~~L~I~~~~~~D~-G~Y~C~a~N~~   64 (76)
T cd05867           1 GETARLDCQVE---GIPTPNITWSING-APIEGT---DPDPRRH-VSSGALILTDVQPSDT-AVYQCEARNRH   64 (76)
T ss_pred             CCeEEEEEEee---EeCCCeEEEEECC-EECCCC---CCCceEE-eeCCEEEECCCChhhC-EEEEEEEECCC
Confidence            78999999998   4599999999997 555321   1123444 4678999999999998 99999999987

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.62  E-value=1.3e-15  Score=99.77  Aligned_cols=60  Identities=18%  Similarity=0.244  Sum_probs=48.9

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC----eEEEeecCcCCCCcceEEEeeecC
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG----ELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g----~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.|+|.+.   |.|.|.|+|+|++ ..+..     ...|+.+..++    .|.|.+++.+|+ |.|+|.|.|.+
T Consensus         1 v~l~C~v~---G~P~P~v~W~k~~-~~l~~-----~~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~A~N~~   64 (75)
T cd05893           1 VRLECRVS---GVPHPQIFWKKEN-ESLTH-----NTDRVSMHQDNCGYICLLIQGATKEDA-GWYTVSAKNEA   64 (75)
T ss_pred             CEEEEEEe---EecCCEEEEEECC-EECCC-----CCCeEEEEEcCCCEEEEEECCCCHHHC-EEEEEEEEcCC
Confidence            57999998   4599999999997 45532     34567665443    699999999999 99999999998

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.62  E-value=2.2e-15  Score=100.66  Aligned_cols=72  Identities=21%  Similarity=0.389  Sum_probs=59.5

Q ss_pred             EEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEe
Q psy12724         69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        69 ~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      .-.+.++.+..|+++.|.|.+.|   .|.|.++|+|++ ..+.      .+.++.+ .++.|.|.+++.+|+ |.|+|.|
T Consensus         3 ~~~p~~~~~~~G~~~~l~C~~~g---~p~p~v~W~k~g-~~~~------~~~~~~~-~~~~L~i~~~~~~D~-G~Y~C~a   70 (85)
T cd05728           3 LKVISDTEADIGSSLRWECKASG---NPRPAYRWLKNG-QPLA------SENRIEV-EAGDLRITKLSLSDS-GMYQCVA   70 (85)
T ss_pred             cccCCccEEcCCCcEEEEEEeeE---eCCCEEEEEECC-EECC------CCCeEEE-eCCEEEEeeCCHHHC-EEEEEEE
Confidence            33456788999999999999984   599999999997 4542      2445554 578999999999998 9999999


Q ss_pred             eecC
Q psy12724        149 KHRL  152 (167)
Q Consensus       149 ~n~~  152 (167)
                      .|..
T Consensus        71 ~N~~   74 (85)
T cd05728          71 ENKH   74 (85)
T ss_pred             ECCC
Confidence            9987

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.62  E-value=2.5e-15  Score=100.79  Aligned_cols=75  Identities=17%  Similarity=0.336  Sum_probs=57.3

Q ss_pred             CcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc----cCCeEEEeecCcCCCCcceEEEeeecC---c
Q psy12724         81 NSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL----PSGELHIRDVGPEDGYKSYQCRTKHRL---T  153 (167)
Q Consensus        81 ~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~----~~g~L~I~~v~~~D~~G~Y~C~a~n~~---~  153 (167)
                      ++|.|+|.+.+. +++.+.++|+||+ ..|...   ..+.||.+.    .+|.|.|+|++.+|+ |+|+|.|+|.+   +
T Consensus         1 ~~~~l~C~v~~d-~~l~~~~~W~~dg-~~i~~~---~~~~~~~~~~~~~~~~~L~I~nv~~~ds-G~YtC~a~n~~~~~~   74 (85)
T cd05853           1 ESIVLPCQVSHD-HSLDIVFTWSFNG-HLIDFQ---KDGDHFERVGGQDSAGDLMIRSIQLKHA-GKYVCMVQTSVDKLS   74 (85)
T ss_pred             CcEEEEEEeccC-CCCCcEEEEEECC-EECccc---CCCccEEEeccCCCCCcEEEecCCHHHC-EEEEEEEEcccCceE
Confidence            479999999753 4568889999998 566321   134577663    567999999999999 99999999988   5


Q ss_pred             ceEEEeee
Q psy12724        154 GETRLSAT  161 (167)
Q Consensus       154 ~~~~l~~~  161 (167)
                      +.+.|.+.
T Consensus        75 a~a~L~V~   82 (85)
T cd05853          75 AAADLIVR   82 (85)
T ss_pred             EEEEEEEe
Confidence            56666653

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.61  E-value=1.5e-15  Score=97.53  Aligned_cols=59  Identities=29%  Similarity=0.590  Sum_probs=51.0

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.|.|.+.   |.|.|.++|+|++ ..+.      ...++.+..++.|.|.+++.+|+ |.|+|.|.|.+
T Consensus         1 v~L~C~~~---g~P~p~i~W~k~g-~~~~------~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~   59 (69)
T cd05746           1 VQIPCSAQ---GDPEPTITWNKDG-VQVT------ESGKFHISPEGYLAIRDVGVADQ-GRYECVARNTI   59 (69)
T ss_pred             CEeEecce---EeCCCEEEEEECC-EECC------CCCCEEECCCCEEEECcCChhhC-EEEEEEEECCC
Confidence            57999998   4599999999987 5553      35678888889999999999998 99999999998

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.61  E-value=4.8e-15  Score=99.91  Aligned_cols=79  Identities=19%  Similarity=0.365  Sum_probs=60.4

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeE-EeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC---cce
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELF-VDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL---TGE  155 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~-~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~  155 (167)
                      |++|.|.|.+.   |+|.|.+.|+|++...+. +........|+.+..+|.|.|.+++.+|+ |.|.|.|.|..   ...
T Consensus         1 G~~v~L~C~~~---g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G~~~~~   76 (90)
T cd05726           1 GRTVTFQCEAT---GNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDV-GYYICQTLNVAGSILTK   76 (90)
T ss_pred             CCEEEEEEECC---ccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhC-EEEEEEEEcCCCceEEE
Confidence            78999999997   559999999998743221 11000135688888889999999999998 99999999976   456


Q ss_pred             EEEeeeC
Q psy12724        156 TRLSATK  162 (167)
Q Consensus       156 ~~l~~~~  162 (167)
                      +.|.+.+
T Consensus        77 ~~l~V~~   83 (90)
T cd05726          77 AYLEVTD   83 (90)
T ss_pred             EEEEEee
Confidence            6777654

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.61  E-value=5.6e-15  Score=101.50  Aligned_cols=81  Identities=17%  Similarity=0.244  Sum_probs=63.3

Q ss_pred             EEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcceE
Q psy12724         69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        69 ~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~  145 (167)
                      .-.+.+..+..|+++.|.|.+.   |.|.|.++|+||+ ..+.      .+.++.+..   ...|.|.++..+|+ |.|+
T Consensus         4 ~~~p~~~~v~~G~~v~l~C~~~---G~p~p~v~W~kdg-~~l~------~~~~~~~~~~~~~s~L~I~~~~~~D~-G~Yt   72 (98)
T cd05762           4 IQFPEDMKVRAGESVELFCKVT---GTQPITCTWMKFR-KQIQ------EGEGIKIENTENSSKLTITEGQQEHC-GCYT   72 (98)
T ss_pred             EECCcCEEEECCCEEEEEEEEc---ccCCCceEEEECC-EEec------CCCcEEEEecCCeeEEEECCCChhhC-EEEE
Confidence            3445677899999999999998   5699999999997 5663      234555542   45799999999999 9999


Q ss_pred             EEeeecC---cceEEEee
Q psy12724        146 CRTKHRL---TGETRLSA  160 (167)
Q Consensus       146 C~a~n~~---~~~~~l~~  160 (167)
                      |.|.|.+   .+.+.|.+
T Consensus        73 c~a~N~~G~~~~~~~l~V   90 (98)
T cd05762          73 LEVENKLGSRQAQVNLTV   90 (98)
T ss_pred             EEEEcCCCceeEEEEEEE
Confidence            9999998   33445554

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.61  E-value=5e-15  Score=101.48  Aligned_cols=73  Identities=21%  Similarity=0.351  Sum_probs=55.9

Q ss_pred             EecCeEEEeCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEeeeecCCceEEEccC----CeEEEeecCcCCCCcceE
Q psy12724         71 NIMDEHVLKGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVDMTESTDGKYLVLPS----GELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        71 ~~~~~~v~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~----g~L~I~~v~~~D~~G~Y~  145 (167)
                      .+.+..+.+|+++.|.|.+.|   .|. |.++|+|.++..+..     .+.|+.+..+    +.|.|.+++.+|+ |.|+
T Consensus         6 ~p~~~~v~~G~~v~l~C~v~G---~P~~p~i~W~~~~g~~l~~-----~~~r~~v~~~~~~~~~L~I~~v~~~D~-G~Yt   76 (96)
T cd05865           6 VPSQGEISVGESKFFLCQVAG---EAKDKDISWFSPNGEKLTP-----NQQRISVVRNDDYSSTLTIYNANIDDA-GIYK   76 (96)
T ss_pred             eCCccEECCCCeEEEEEEEeC---CCCCCEEEEECCCCcCccc-----cCCeEEEEeCCCCceEEEEeccChhhC-EEEE
Confidence            345667889999999999984   574 799999843345532     2446555432    5799999999998 9999


Q ss_pred             EEeeecC
Q psy12724        146 CRTKHRL  152 (167)
Q Consensus       146 C~a~n~~  152 (167)
                      |.|+|.+
T Consensus        77 C~A~N~~   83 (96)
T cd05865          77 CVVSNED   83 (96)
T ss_pred             EEEEcCC
Confidence            9999986

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.61  E-value=5.6e-15  Score=100.46  Aligned_cols=76  Identities=26%  Similarity=0.413  Sum_probs=61.2

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeec-----CcCCCCc
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDV-----GPEDGYK  142 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v-----~~~D~~G  142 (167)
                      |.-.+.+..+.+|+++.|.|.+.+   +|.|.++|+||+ ..+...    ...++.+..+|.|.|.++     ..+|+ |
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g---~P~p~i~W~k~g-~~l~~~----~~~~~~~~~~~~l~i~~v~~~~~~~~D~-G   72 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEG---EPPPKIEWKKDG-VLLNLV----SDERRQQLPNGSLLITSVVHSKHNKPDE-G   72 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeeccc---CCCCEEEEEECC-eECccc----cCcceEEccCCeEEEeeeeccCCCCCcC-E
Confidence            344567788899999999999984   599999999987 555321    234567778899999988     58998 9


Q ss_pred             ceEEEeeec-C
Q psy12724        143 SYQCRTKHR-L  152 (167)
Q Consensus       143 ~Y~C~a~n~-~  152 (167)
                      .|+|.|.|. .
T Consensus        73 ~Y~C~a~N~~~   83 (95)
T cd05722          73 FYQCVAQNDSL   83 (95)
T ss_pred             EEEEEEECCcc
Confidence            999999999 6

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.61  E-value=3.4e-15  Score=97.77  Aligned_cols=64  Identities=14%  Similarity=0.314  Sum_probs=50.6

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |+++.|.|.+.   |+|.|.++|+|++ .++...    ...+.....++.|.|.+++.+|+ |.|+|.|+|..
T Consensus         1 g~~~~l~C~a~---G~P~P~i~W~k~g-~~i~~~----~~~~~~~~~~~~l~i~~v~~~D~-G~Y~C~A~N~~   64 (76)
T cd05868           1 GEDGTLICRAN---GNPKPSISWLTNG-VPIEIA----PTDPSRKVDGDTIIFSKVQERSS-AVYQCNASNEY   64 (76)
T ss_pred             CCCEEEEEEee---EeCCCeEEEEECC-EEcccc----CCCceEEecCCEEEECCCCHhhC-EEEEEEEEcCC
Confidence            78999999998   5599999999997 566321    11222233456899999999998 99999999998

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>KOG4222|consensus

Probab=99.61  E-value=2.1e-15  Score=136.42  Aligned_cols=134  Identities=25%  Similarity=0.414  Sum_probs=108.6

Q ss_pred             eEEEeeeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc--------eE-------EEeeeE
Q psy12724          5 PVAVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD--------FV-------VSQSYT   69 (167)
Q Consensus         5 ~~av~~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~--------~v-------~~g~y~   69 (167)
                      -+||++..|++.+.++.+..|+.++|+|.-+..+.+  |+++|.||+-........+        ++       ..|.|.
T Consensus       126 ~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpe--ptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~  203 (1281)
T KOG4222|consen  126 IVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPE--PTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYA  203 (1281)
T ss_pred             EEEEechhcccCcccccccccceeEEeccCCCCCCC--CcceeecCCCccccccceeEEEecCCcEEEeccccCCCceee
Confidence            579999999999999999999999999998776665  6899999965332111110        11       279999


Q ss_pred             EEec--------------------------CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEE
Q psy12724         70 VNIM--------------------------DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYL  123 (167)
Q Consensus        70 c~~~--------------------------~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~  123 (167)
                      |.+.                          ++.+..|.++.|.|.+.   |+|.|.+.|.|++. .+       ...||.
T Consensus       204 CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~---GdP~P~Vrwkk~~~-~~-------P~~ry~  272 (1281)
T KOG4222|consen  204 CVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVG---GDPQPTVRWKKDDP-SL-------PRSRYS  272 (1281)
T ss_pred             eeecccccccccccceeeeccCCccccccccceeecccccccccccC---CCCCCceeeeccCC-CC-------Ccccee
Confidence            9763                          35678999999999998   67999999999873 44       367888


Q ss_pred             EccC-CeEEEeecCcCCCCcceEEEeeecC
Q psy12724        124 VLPS-GELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       124 ~~~~-g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++.+ -+|.|.+++..|+ |.|.|.|.|.+
T Consensus       273 i~~d~qtl~i~r~tp~de-g~y~C~a~n~v  301 (1281)
T KOG4222|consen  273 ILDDTQTLRIDRVTPTDE-GTYVCPAENLV  301 (1281)
T ss_pred             eeeccccccccccCCCcc-cceeeeccccc
Confidence            8876 7899999999998 99999999987

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.60  E-value=5.1e-15  Score=99.32  Aligned_cols=68  Identities=19%  Similarity=0.273  Sum_probs=55.9

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcceEEEeeec
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      ..+.+|+++.|.|.+.   |+|.|.++|+|++ ..+.+     .++|+.+..   .+.|.|.++..+|+ |.|+|.|.|.
T Consensus         5 ~~v~~G~~v~l~c~~~---G~P~P~v~W~k~~-~~i~~-----~~~r~~~~~~~~~~~L~I~~~~~~D~-G~Y~c~a~N~   74 (86)
T cd05894           5 IVVVAGNKLRLDVPIS---GEPAPTVTWSRGD-KAFTE-----TEGRVRVESYKDLSSFVIEGAEREDE-GVYTITVTNP   74 (86)
T ss_pred             EEEEcCCEEEEEeeEe---ecCCCeEEEEECC-EECcc-----CCCeEEEEEcCCeEEEEECCCccCcC-EEEEEEEEeC
Confidence            4678999999999998   5699999999997 56642     234665543   35799999999999 9999999999


Q ss_pred             C
Q psy12724        152 L  152 (167)
Q Consensus       152 ~  152 (167)
                      .
T Consensus        75 ~   75 (86)
T cd05894          75 V   75 (86)
T ss_pred             C
Confidence            8

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.60  E-value=7.9e-15  Score=99.77  Aligned_cols=72  Identities=21%  Similarity=0.430  Sum_probs=59.1

Q ss_pred             EEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcceEE
Q psy12724         70 VNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        70 c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~C  146 (167)
                      ..+.+..+.+|+++.|.|.+.|   .|. .++|+|+++..+.      .+.|+.+..+|   .|.|++++.+|+ |.|+|
T Consensus         5 ~~~~~~~v~~G~~v~l~C~~~G---~P~-~v~W~k~~g~~~~------~~~r~~~~~~g~~~~L~I~~v~~~D~-G~Y~C   73 (92)
T cd05866           5 ISLSKVELSVGESKFFTCTAIG---EPE-SIDWYNPQGEKIV------SSQRVVVQKEGVRSRLTIYNANIEDA-GIYRC   73 (92)
T ss_pred             EEecceEEcCCCeEEEEEEEEE---eCC-eEEEEeCCCeEec------CCCCEEEEeCCCeeEEEEecCChHHC-EEEEE
Confidence            4566788999999999999984   477 7899986555553      34677777666   799999999999 99999


Q ss_pred             EeeecC
Q psy12724        147 RTKHRL  152 (167)
Q Consensus       147 ~a~n~~  152 (167)
                      .|+|..
T Consensus        74 ~A~N~~   79 (92)
T cd05866          74 QATDAK   79 (92)
T ss_pred             EEEcCC
Confidence            999987

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.60  E-value=1e-14  Score=99.86  Aligned_cols=78  Identities=24%  Similarity=0.490  Sum_probs=58.8

Q ss_pred             EEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcceE
Q psy12724         70 VNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        70 c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~  145 (167)
                      -..++..+.+|++++|.|.+.   |.|.|.++|+|++ +..+.... ...++|+.+..   ++.|.|.+++.+|+ |.|+
T Consensus         6 ~~~~~~~~~~G~~v~l~C~~~---G~P~p~i~W~k~~~g~~~~~~~-~~~~~r~~v~~~~~~~~L~I~~v~~~D~-G~Y~   80 (98)
T cd05870           6 IQLKNETTVENGAATLSCKAE---GEPIPEITWKRASDGHTFSEGD-KSPDGRIEVKGQHGESSLHIKDVKLSDS-GRYD   80 (98)
T ss_pred             EeeccEEEcCCCcEEEEEecc---cCCCCeEEEEECCCCceeccCC-cCcCceEEEeecCCeeEEEEeeCCcCCC-EEEE
Confidence            345678899999999999998   4599999999953 22332100 01245776653   34799999999998 9999


Q ss_pred             EEeeecC
Q psy12724        146 CRTKHRL  152 (167)
Q Consensus       146 C~a~n~~  152 (167)
                      |.|.|.+
T Consensus        81 C~A~N~~   87 (98)
T cd05870          81 CEAASRI   87 (98)
T ss_pred             EEEeccC
Confidence            9999998

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.59  E-value=7.4e-15  Score=98.43  Aligned_cols=69  Identities=22%  Similarity=0.383  Sum_probs=56.1

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      +.+..+.+|+++.|+|.+.   |+|.|.++|+|++. .+.+      ..++. ..++.|.|.+++.+|+ |.|+|.|.|.
T Consensus         8 p~~~~~~~g~~v~l~C~~~---g~P~p~v~W~k~~~-~~~~------~~~~~-~~~~~L~i~~v~~~D~-G~Y~C~a~N~   75 (88)
T cd04968           8 PKDTYALKGQNVTLECFAL---GNPVPQIKWRKVDG-SMPS------SAEIS-MSGAVLKIPNIQFEDE-GTYECEAENI   75 (88)
T ss_pred             CCceEEeCCCcEEEEEEee---EeCCCEEEEEECCC-cCCC------ccEEE-EeCCEEEECCCCcccC-EEEEEEEEEC
Confidence            4567788999999999998   55999999999874 3321      22232 4678999999999998 9999999998


Q ss_pred             C
Q psy12724        152 L  152 (167)
Q Consensus       152 ~  152 (167)
                      .
T Consensus        76 ~   76 (88)
T cd04968          76 K   76 (88)
T ss_pred             C
Confidence            7

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.59  E-value=5.1e-15  Score=101.35  Aligned_cols=79  Identities=20%  Similarity=0.328  Sum_probs=61.1

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCcc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTG  154 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~~  154 (167)
                      ..+.+|+.++|+|..+.  +.|.|.++|+|++ ..+...   ....++....+|.|+|++|+.+|+ |.|+|.|+|.++.
T Consensus        13 ~~v~eG~~~~L~C~pP~--g~P~p~~~W~k~~-~~~~~~---~d~r~~~~~~~G~L~fs~v~~~D~-g~Y~C~A~n~~~~   85 (96)
T cd05727          13 VKVKEGWGVVLFCDPPP--HYPDLSYRWLLNE-FPNFIP---EDGRRFVSQTNGNLYIAKVEASDR-GNYSCFVSSPSST   85 (96)
T ss_pred             eeeeeCCcEEEeeCCCC--CCCCCEEEEEECC-cccccc---cCCCeEEeCCCCcEEEeecCHhhC-ceeEEEEEecccC
Confidence            46889999999999875  5689999999997 333211   123455555689999999999999 9999999999876


Q ss_pred             eEEEee
Q psy12724        155 ETRLSA  160 (167)
Q Consensus       155 ~~~l~~  160 (167)
                      +.+.+.
T Consensus        86 ~~~~~~   91 (96)
T cd05727          86 KSVFSK   91 (96)
T ss_pred             CcccCC
Confidence            655443

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.59  E-value=1e-14  Score=94.50  Aligned_cols=63  Identities=27%  Similarity=0.455  Sum_probs=53.0

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |+++.|.|.+.+   .|.|.++|+++++..+.      ...++....+|.|.|.++..+|+ |.|+|.|.|..
T Consensus         1 G~~~~l~C~~~g---~P~p~v~W~~~~~~~~~------~~~~~~~~~~~~L~i~~~~~~D~-G~Y~C~a~N~~   63 (74)
T cd05764           1 GQRATLRCKARG---DPEPAIHWISPDGKLIS------NSSRTLVYDNGTLDILITTVKDT-GSFTCIASNAA   63 (74)
T ss_pred             CCeEEEEEEccC---cCCCEEEEEeCCCEEec------CCCeEEEecCCEEEEEECChhhC-EEEEEEEECCC
Confidence            789999999984   59999999986544442      34567777889999999999998 99999999987

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.58  E-value=1.1e-14  Score=98.59  Aligned_cols=68  Identities=24%  Similarity=0.404  Sum_probs=54.5

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc--C--CeEEEeecCcCCCCcceEEEee
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP--S--GELHIRDVGPEDGYKSYQCRTK  149 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~--~--g~L~I~~v~~~D~~G~Y~C~a~  149 (167)
                      ...+.+|+++.|.|.+.   |+|.|.++|+|++ ..+.      .+.++.+..  +  ..|.|.+++.+|+ |.|+|.|.
T Consensus        10 ~v~v~~G~~v~L~C~v~---G~P~p~v~W~k~g-~~l~------~~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~   78 (92)
T cd05737          10 VVTIMEGKTLNLTCTVF---GDPDPEVSWLKND-QALA------LSDHYNVKVEQGKYASLTIKGVSSEDS-GKYGIVVK   78 (92)
T ss_pred             eEEEeCCCcEEEEEEEE---ecCCCeEEEEECC-EECc------cCCCEEEEEcCCCEEEEEEccCChhhC-EEEEEEEE
Confidence            35788999999999998   4599999999997 5553      234454432  2  2699999999999 99999999


Q ss_pred             ecC
Q psy12724        150 HRL  152 (167)
Q Consensus       150 n~~  152 (167)
                      |..
T Consensus        79 N~~   81 (92)
T cd05737          79 NKY   81 (92)
T ss_pred             ECC
Confidence            987

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.58  E-value=7.8e-15  Score=93.97  Aligned_cols=58  Identities=29%  Similarity=0.590  Sum_probs=49.3

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |.|.|.+.   |+|.|.++|+|+++ .+       ..+++.+..++.|.|.+++.+|+ |.|+|.|.|..
T Consensus         1 v~l~C~~~---g~P~p~v~W~k~~~-~~-------~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~   58 (69)
T cd05725           1 VEFQCEVG---GDPVPTVLWRKEDG-EL-------PKGRAEILDDKSLKIRNVTAGDE-GSYTCEAENMV   58 (69)
T ss_pred             CEEEEECc---cCCCCEEEEEECCc-cC-------CCCcEEEeeCCEEEECcCChhHC-EEEEEEEEcCC
Confidence            57999998   45999999999973 33       24567777888999999999998 99999999987

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.57  E-value=9.9e-15  Score=100.92  Aligned_cols=69  Identities=14%  Similarity=0.163  Sum_probs=54.4

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc--------CCeEEEeecCcCCCCcceE
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP--------SGELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~--------~g~L~I~~v~~~D~~G~Y~  145 (167)
                      +..+.+|+++.|.|.+.|+  .|.|.++|+||+ .+|..      +.++.+..        .+.|.|.++..+|+ |.|+
T Consensus        12 ~~~v~~G~~v~L~c~v~g~--~P~p~v~W~Kdg-~~i~~------~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~-G~Yt   81 (101)
T cd04975          12 TIFVNLGENLNLVVEVEAY--PPPPHINWTYDN-RTLTN------KLTEIVTSENESEYRYVSELKLVRLKESEA-GTYT   81 (101)
T ss_pred             eEEEECCCCEEEEEEEEec--CCCCccEEEeCC-eeCCC------CcceeEEEeccCcceEEEEEEEeecCHhhC-eeEE
Confidence            3578899999999999851  589999999997 56631      22322222        25799999999999 9999


Q ss_pred             EEeeecC
Q psy12724        146 CRTKHRL  152 (167)
Q Consensus       146 C~a~n~~  152 (167)
                      |.|+|..
T Consensus        82 c~A~N~~   88 (101)
T cd04975          82 FLASNSD   88 (101)
T ss_pred             EEEECCC
Confidence            9999998

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.57  E-value=1.2e-14  Score=94.50  Aligned_cols=64  Identities=19%  Similarity=0.294  Sum_probs=51.1

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |+++.|.|.+.   |+|.|.++|++++ ..+...    .........++.|.|.+++.+|+ |.|+|.|.|..
T Consensus         1 G~~~~l~C~~~---g~P~p~i~W~~~g-~~~~~~----~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~A~N~~   64 (76)
T cd04978           1 GETGRLDCEAE---GIPQPTITWRLNG-VPIEEL----PPDPRRRVDGGTLILSNVQPNDT-AVYQCNASNVH   64 (76)
T ss_pred             CCeEEEEEEce---eeCCCEEEEEECC-EECCCC----CCcceEEccCCEEEECCCChhhC-EEEEEEEEccC
Confidence            78999999997   5699999999997 555321    11223445678999999999998 99999999987

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.57  E-value=8.2e-14  Score=114.65  Aligned_cols=121  Identities=15%  Similarity=0.272  Sum_probs=87.1

Q ss_pred             EEEEEeCCcEEEEeec-----CCCCCCcceeeEEeeCCCc---eee-ecCCce-------EEEeeeEEEecC--------
Q psy12724         19 DVFVIKGNAAVFKCNL-----PSFVSDHLDVVSWADTDGG---QYQ-IDNQDF-------VVSQSYTVNIMD--------   74 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a-----~~~~~~~~~~i~W~k~~~~---~~~-~~~~~~-------v~~g~y~c~~~~--------   74 (167)
                      ...+.+|+.+.|+|.+     .+++   .+.++|+|+++.   ... .++.+.       -.+|.|+|.+.|        
T Consensus        35 ~~~~~~ge~~~l~C~~~~~~~~g~p---~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s  111 (326)
T PHA02785         35 SFMELENEPVILPCPQINTLSSGYN---ILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMS  111 (326)
T ss_pred             hhhhhcCCCEEEECCCccccccCCC---CceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEE
Confidence            4467899999999997     4554   358999998642   111 122221       138999998754        


Q ss_pred             -------------------eEEEeCCcEEEEeeeC-Cc-cCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEe
Q psy12724         75 -------------------EHVLKGNSAVLKCHIP-SF-VADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIR  133 (167)
Q Consensus        75 -------------------~~v~~G~~a~l~C~~~-~~-~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~  133 (167)
                                         +.+.+|..+.|.|... .+ .++|.|.++|+|++  .+       ...|+...++|.|.|.
T Consensus       112 ~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~--~~-------~~~r~~~~~~~~L~i~  182 (326)
T PHA02785        112 LNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR--RL-------RNKRLKQRTPGIITIE  182 (326)
T ss_pred             EEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCC--cc-------CCcceEecCCCeEEEe
Confidence                               1234688999999732 11 14688999998864  22       2467777778999999


Q ss_pred             ecCcCCCCcceEEEeeecC
Q psy12724        134 DVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       134 ~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +++.+|+ |.|+|.|.|..
T Consensus       183 ~v~~~d~-G~Y~C~~~n~~  200 (326)
T PHA02785        183 DVRKNDA-GYYTCVLKYIY  200 (326)
T ss_pred             ecChhhC-eEEEEEEEecc
Confidence            9999999 99999999976

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.56  E-value=2.3e-14  Score=97.25  Aligned_cols=69  Identities=25%  Similarity=0.392  Sum_probs=56.2

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC-eEEEeecCcCCCCcceEEEeeecC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG-ELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g-~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +..+..|+++.|.|.+.|   .|.|.++|+|++ ..+..     ...++....++ .|.|.+++.+|+ |.|+|.|.|.+
T Consensus        12 ~~~~~~G~~v~L~C~~~g---~P~p~v~W~k~g-~~~~~-----~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~   81 (95)
T cd05730          12 NATANLGQSVTLACDADG---FPEPTMTWTKDG-EPIES-----GEEKYSFNEDGSEMTILDVDKLDE-AEYTCIAENKA   81 (95)
T ss_pred             ceEEeCCCCEEEEEeccE---eCCCEEEEEECC-EECcC-----CCCEEEEeCCCCEEEECCCChhhC-EEEEEEEEcCC
Confidence            457789999999999984   599999999997 45532     23566555554 699999999998 99999999998

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.56  E-value=1.6e-14  Score=97.52  Aligned_cols=73  Identities=21%  Similarity=0.324  Sum_probs=50.9

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCC---CeeeEEeeeecCCceEEE----------ccCCeEEEeecCcCCCCcceEE
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQ---GEELFVDMTESTDGKYLV----------LPSGELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~---~~~l~~~~~~~~~~r~~~----------~~~g~L~I~~v~~~D~~G~Y~C  146 (167)
                      |++|.|.|.+.   |+|.|.|+|+|++   +..+.+.    .......          ...+.|.|.+++.+|+ |.|+|
T Consensus         1 G~~v~l~C~v~---g~P~P~i~W~k~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C   72 (90)
T cd04974           1 GSDVEFHCKVY---SDAQPHIQWLKHVEVNGSKYGPD----GLPYVTVLKVAGINTTDNESEVLYLRNVSFDDA-GEYTC   72 (90)
T ss_pred             CCcEEEEEEEe---CCCCCeEEEEEecccCCceeCCC----CCceEEEEEecCCcccccccceEEEeccccccC-cEEEE
Confidence            78999999998   5699999999963   1222110    1111111          1235799999999999 99999


Q ss_pred             EeeecC---cceEEEee
Q psy12724        147 RTKHRL---TGETRLSA  160 (167)
Q Consensus       147 ~a~n~~---~~~~~l~~  160 (167)
                      .|.|.+   ...+.|++
T Consensus        73 ~A~N~~G~~~~sa~L~V   89 (90)
T cd04974          73 LAGNSIGPSHHSAWLTV   89 (90)
T ss_pred             EeecccCcccCCEEEEe
Confidence            999998   44555554

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.56  E-value=3.1e-14  Score=96.29  Aligned_cols=72  Identities=14%  Similarity=0.285  Sum_probs=58.8

Q ss_pred             EEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcceEE
Q psy12724         70 VNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        70 c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~C  146 (167)
                      -.+++..+.+|+++.|.|.+.+   +|.|.+.|+|++ ..+.      .+.|+.+..   .+.|.|.+++.+|+ |.|.|
T Consensus         8 ~~p~~~~~~~G~~~~L~C~~~g---~P~p~v~W~k~g-~~l~------~~~~~~~~~~~~~~~L~i~~~~~~D~-G~Y~C   76 (92)
T cd05747           8 TKPRSLTVSEGESARFSCDVDG---EPAPTVTWMREG-QIIV------SSQRHQITSTEYKSTFEISKVQMSDE-GNYTV   76 (92)
T ss_pred             ccCccEEEeCCCcEEEEEEEee---cCCCEEEEEECC-EECC------CCCcEEEEEcCCeeEEEECCCCcccC-EeEEE
Confidence            3456788999999999999984   599999999997 4543      244665544   35899999999998 99999


Q ss_pred             EeeecC
Q psy12724        147 RTKHRL  152 (167)
Q Consensus       147 ~a~n~~  152 (167)
                      .|+|.+
T Consensus        77 ~a~N~~   82 (92)
T cd05747          77 VVENSE   82 (92)
T ss_pred             EEEcCC
Confidence            999988

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.55  E-value=2.6e-14  Score=96.93  Aligned_cols=68  Identities=15%  Similarity=0.315  Sum_probs=55.3

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc-CCeEEEeecCcCCCCcceEEEeeec
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP-SGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~-~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      .++.+.+|++++|.|.+.   |. .|.++|+|++ ..+.       .+++.+.. ++.|.|.+++.+|+ |.|+|.|.|.
T Consensus        11 ~~~~v~~g~~v~l~C~a~---g~-~p~i~W~kng-~~l~-------~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~   77 (91)
T cd05740          11 GNQPPEDNQPVTLTCEAE---GQ-ATYIWWVNNG-SLLV-------PPRLQLSNDNRTLTFNNVTRSDT-GHYQCEASNE   77 (91)
T ss_pred             CccccccCCcEEEEEEeC---CC-CCEEEEEECC-EECC-------CCCEEEeCCCCEEEECcCChhhC-EEEEEEEEcC
Confidence            356888999999999998   45 7899999997 4442       34555543 46899999999998 9999999999


Q ss_pred             Cc
Q psy12724        152 LT  153 (167)
Q Consensus       152 ~~  153 (167)
                      ..
T Consensus        78 ~G   79 (91)
T cd05740          78 VS   79 (91)
T ss_pred             CC
Confidence            83

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.55  E-value=1.3e-13  Score=113.48  Aligned_cols=135  Identities=19%  Similarity=0.197  Sum_probs=84.1

Q ss_pred             EeEEEEEeCCcEEEEeec-----CCCCCCcceeeEEeeCCCc---ee--eecCCceE------EEeeeEEEecC------
Q psy12724         17 VYDVFVIKGNAAVFKCNL-----PSFVSDHLDVVSWADTDGG---QY--QIDNQDFV------VSQSYTVNIMD------   74 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a-----~~~~~~~~~~i~W~k~~~~---~~--~~~~~~~v------~~g~y~c~~~~------   74 (167)
                      +....+.+|..+.|.|..     .+.+.   +.+.|.+++..   .+  .+++.+.+      ..|.|+|.+.+      
T Consensus       128 ~~~~~~~~g~~~~i~C~~~~~~~~~~~~---~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~  204 (326)
T PHA02785        128 SYPQIVNERSTGEMVCPNINAFIASNVN---ADIIWSGHRRLRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKT  204 (326)
T ss_pred             eccceecccCcEEEECCChhhcccCCCC---ceEEEccCCccCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEE
Confidence            344557799999999973     23332   57999886320   00  01111111      27999998742      


Q ss_pred             -------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc----
Q psy12724         75 -------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL----  125 (167)
Q Consensus        75 -------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~----  125 (167)
                                               ..+..|+++.|.|.+.+..+...|.+.|+||+ ..+.... +...+|+...    
T Consensus       205 ~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng-~~i~~~~-~~~~~~~~~~~~~~  282 (326)
T PHA02785        205 YNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNG-MYYEEDD-EDGDGRISVANKIY  282 (326)
T ss_pred             EeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECC-EECCCcC-CCCceeEEEecCcc
Confidence                                     11235999999999986421112589999997 5552110 0012233221    


Q ss_pred             -------cCCeEEEeecCcCCCCcceEEEeeecCcceEE
Q psy12724        126 -------PSGELHIRDVGPEDGYKSYQCRTKHRLTGETR  157 (167)
Q Consensus       126 -------~~g~L~I~~v~~~D~~G~Y~C~a~n~~~~~~~  157 (167)
                             ..+.|.|.+++.+|+ |.|+|.|.|..+..++
T Consensus       283 ~~~~~~~~~~~L~I~~V~~~D~-G~Y~C~A~n~~~~~~~  320 (326)
T PHA02785        283 TTDKRRVITSRLNINPVKEEDA-TTFTCMAFTIPSISKT  320 (326)
T ss_pred             ccccceeeeEEEEECCcchhcC-eeeEEEEEeccCceEe
Confidence                   146799999999998 9999999998854443

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.55  E-value=2.2e-14  Score=96.55  Aligned_cols=72  Identities=18%  Similarity=0.351  Sum_probs=55.6

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc----C---CeEEEeecCcCCCCcceEEEeeecC
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP----S---GELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~----~---g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |+++.|.|.+.+   .|.|.++|+|++ ..+.+     ..+||.+..    +   ..|.|.++..+|+ |.|+|.|.|.+
T Consensus         1 g~~~~l~C~~~g---~p~~~i~W~k~~-~~i~~-----~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~-G~YtC~A~N~~   70 (88)
T cd05735           1 GQKKEMSCTAHG---EKPIIVRWEKED-RIINP-----EMSRYLVSTKEVGDEVISTLQILPTVREDS-GFFSCHAINSY   70 (88)
T ss_pred             CCeEEEEEEEEC---CCCCEEEEeeCC-EECCC-----CCCcEEEEEecCCCcEEEEEEECCCCcccC-EEEEEEEEcCC
Confidence            789999999984   599999999997 45532     235665542    1   4699999999998 99999999998


Q ss_pred             ---cceEEEeee
Q psy12724        153 ---TGETRLSAT  161 (167)
Q Consensus       153 ---~~~~~l~~~  161 (167)
                         +..+.|++.
T Consensus        71 G~~~~~~~L~V~   82 (88)
T cd05735          71 GEDRGIIQLTVQ   82 (88)
T ss_pred             CcceEEEEEEEe
Confidence               445566653

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.55  E-value=1.8e-14  Score=94.16  Aligned_cols=60  Identities=18%  Similarity=0.275  Sum_probs=48.0

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC--C--eEEEeecCcCCCCcceEEEeeecC
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS--G--ELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~--g--~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.|.|.+.|   .|.|.++|+||+ ..+..     ...|+.+..+  |  .|.|.+++.+|+ |.|+|.|.|.+
T Consensus         1 v~L~C~v~G---~P~P~v~W~k~~-~~i~~-----~~~r~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~   64 (75)
T cd05744           1 VRLECRVSA---IPPPQIFWKKNN-EMLTY-----NTDRISLYQDNCGRICLLIQNANKEDA-GWYTVSAVNEA   64 (75)
T ss_pred             CEEEEEEee---cCCCeEEEEECC-EECCC-----CCCcEEEEEcCCCeEEEEECCCCcccC-EEEEEEEEcCC
Confidence            579999984   599999999997 55531     2356666443  3  599999999998 99999999998

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.55  E-value=2e-14  Score=93.54  Aligned_cols=62  Identities=26%  Similarity=0.455  Sum_probs=48.2

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc-CCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP-SGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~-~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |.|.|.+.   |.|.|.++|+|++. ...+.   ....|+.+.. ++.|.|.+++.+|+ |.|+|.|.|..
T Consensus         1 a~l~C~~~---G~P~P~v~W~k~~~-~~~~~---~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~A~N~~   63 (75)
T cd05763           1 ARLECAAT---GHPTPQIAWQKDGG-TDFPA---ARERRMHVMPEDDVFFIVDVKIEDT-GVYSCTAQNTA   63 (75)
T ss_pred             CEeEeecc---cccCCEEEEEeCCC-ccCCc---ccccceEEecCCCEEEEeeCCcccC-EEEEEEEEcCC
Confidence            57999998   55999999999974 22221   1244565543 56899999999998 99999999987

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.55  E-value=1.6e-14  Score=94.83  Aligned_cols=62  Identities=21%  Similarity=0.418  Sum_probs=50.1

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC---CeEEEeecCcCCCCcceEEEeeecC
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS---GELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~---g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |+++.|.|.+.+   .|.|.++|+|+++ .+.      ...|+.+...   +.|.|++++.+|+ |.|+|.|.|..
T Consensus         1 G~~v~l~C~~~g---~P~p~v~W~~~~~-~~~------~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~   65 (78)
T cd05743           1 GETVEFTCVATG---VPTPIINWRLNWG-HVP------DSARVSITSEGGYGTLTIRDVKESDQ-GAYTCEAINTR   65 (78)
T ss_pred             CCEEEEEEEEEE---ecCCEEEEEECCe-ECC------CCCCEEEEECCCEEEEEECCCChHHC-EEEEEEEEecC
Confidence            789999999984   5999999999873 442      2345555432   5799999999998 99999999987

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.54  E-value=4e-14  Score=96.36  Aligned_cols=62  Identities=18%  Similarity=0.400  Sum_probs=50.2

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecC-cCCCCcceEEEeeecC
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVG-PEDGYKSYQCRTKHRL  152 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~-~~D~~G~Y~C~a~n~~  152 (167)
                      |+.+.|.|.+.   |+|.|.++|+|++ ..+..     ...++. ..+|.|.|.++. .+|+ |.|+|.|+|..
T Consensus        19 ~~~v~l~C~a~---G~P~P~i~W~k~~-~~i~~-----~~~~~~-~~~g~L~I~~~~~~~D~-G~Y~C~A~N~~   81 (93)
T cd05849          19 EGKVSVNCRAR---ANPFPIYKWRKNN-LDIDL-----TNDRYS-MVGGNLVINNPDKYKDA-GRYVCIVSNIY   81 (93)
T ss_pred             CCeEEEeCcCc---cCCCCEEEEEECC-EEccC-----CCCeEE-EECCEEEECcCCcCCCC-EEEEEEEEeCc
Confidence            45799999998   5699999999997 45531     245664 457899999985 6998 99999999988

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.53  E-value=5.2e-14  Score=95.88  Aligned_cols=72  Identities=22%  Similarity=0.423  Sum_probs=54.3

Q ss_pred             EecCeEEE---eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecC-cCCCCcceEE
Q psy12724         71 NIMDEHVL---KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVG-PEDGYKSYQC  146 (167)
Q Consensus        71 ~~~~~~v~---~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~-~~D~~G~Y~C  146 (167)
                      .+.+..+.   +|+++.|.|.+.   |.|.|.++|+||+ ..+...    ...++. ..+|.|.|.++. .+|+ |.|+|
T Consensus         7 ~p~~~~~~~~~~g~~v~l~C~~~---G~P~P~i~W~k~g-~~l~~~----~~~~~~-~~~g~L~i~~~~~~~D~-G~Y~C   76 (94)
T cd05848           7 EPDDAIFPTDSDEKKVILNCEAR---GNPVPTYRWLRNG-TEIDTE----SDYRYS-LIDGNLIISNPSEVKDS-GRYQC   76 (94)
T ss_pred             CCCcEEccCCCCCCEEEEEEEee---ecCCCEEEEEECC-eECccC----CCceEE-eeCCeEEEccCCccCcC-EEEEE
Confidence            34444443   478999999998   4599999999997 555321    233443 457899999985 6998 99999


Q ss_pred             EeeecC
Q psy12724        147 RTKHRL  152 (167)
Q Consensus       147 ~a~n~~  152 (167)
                      .|.|..
T Consensus        77 ~A~N~~   82 (94)
T cd05848          77 LATNSI   82 (94)
T ss_pred             EEEcCC
Confidence            999998

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.53  E-value=7.1e-14  Score=95.15  Aligned_cols=76  Identities=22%  Similarity=0.372  Sum_probs=56.1

Q ss_pred             eEEEecCeEEEeC---CcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecC-cCCCCcc
Q psy12724         68 YTVNIMDEHVLKG---NSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVG-PEDGYKS  143 (167)
Q Consensus        68 y~c~~~~~~v~~G---~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~-~~D~~G~  143 (167)
                      |.-.+++..+.+|   ++|.|.|.+.   |+|.|.++|+||+ ..+..    ..+.++.+ .+|.|.|.++. .+|+ |.
T Consensus         4 f~~~P~~~~~~~~~~g~~v~l~C~a~---g~P~p~i~W~~~g-~~l~~----~~~~~~~~-~~g~L~I~~~~~~~D~-G~   73 (94)
T cd05850           4 FEEQPSSLLFPEGSPEEKVTLGCRAR---ASPPATYRWKMNG-TEIKF----APESRYTL-VAGNLVINNPQKARDA-GS   73 (94)
T ss_pred             eEECCCCEEecCCCCCCeEEEEeEce---eCCCCEEEEEECC-EECcc----CCCceEEE-ECCeEEEccCCccCcC-EE
Confidence            3334555555455   5899999998   5699999999997 55532    12345544 57899999865 6998 99


Q ss_pred             eEEEeeecCc
Q psy12724        144 YQCRTKHRLT  153 (167)
Q Consensus       144 Y~C~a~n~~~  153 (167)
                      |+|.|.|...
T Consensus        74 Y~C~A~N~~G   83 (94)
T cd05850          74 YQCLAINRCG   83 (94)
T ss_pred             EEEEEEcCcC
Confidence            9999999983

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.53  E-value=3.1e-14  Score=95.90  Aligned_cols=69  Identities=13%  Similarity=0.271  Sum_probs=53.9

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceE---EEccCCeEEEeecCcCCCCcceEEEee
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY---LVLPSGELHIRDVGPEDGYKSYQCRTK  149 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~---~~~~~g~L~I~~v~~~D~~G~Y~C~a~  149 (167)
                      ++..+.+|+++.|.|.+.   |+|.|.++|+|++ ..+..      ..+.   .....+.|.|.+++.+|. |.|+|.|.
T Consensus         8 ~~~~v~~G~~v~l~C~~~---G~P~p~v~W~~~g-~~~~~------~~~~~~~~~~~~~~L~I~~v~~~D~-g~Y~C~A~   76 (90)
T cd04972           8 NATVVYEGGTATIRCTAE---GSPLPKVEWIIAG-LIVIQ------TRTDTLETTVDIYNLQLSNITSETQ-TTVTCTAE   76 (90)
T ss_pred             cCEEEcCCCcEEEEEEEE---EcCCCeEEEEECC-EEccC------CccEEEEecCCEEEEEEecCCcccC-EEEEEEEE
Confidence            345688999999999998   4599999999997 44421      1111   112345899999999998 99999999


Q ss_pred             ecC
Q psy12724        150 HRL  152 (167)
Q Consensus       150 n~~  152 (167)
                      |..
T Consensus        77 N~~   79 (90)
T cd04972          77 NPV   79 (90)
T ss_pred             CCC
Confidence            998

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.53  E-value=3.5e-14  Score=95.59  Aligned_cols=69  Identities=28%  Similarity=0.357  Sum_probs=56.1

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      +++..+..|+++.|.|.+.    .|.|.++|+||+ .++.+     ...|+.+ .+|.|.|+|++.+|+ |.|+|.|.+.
T Consensus         3 P~~~~v~~G~~v~L~C~~~----~~~~~i~W~~ng-~~i~~-----~~~r~~~-~~~~L~I~nv~~~Ds-G~Y~C~a~e~   70 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPK----SNLARVVWKFDG-KVLTP-----ESAKYLL-YRDGLLIFNASEADA-GRYQCLSVEK   70 (87)
T ss_pred             cceEEEECCCCEEEEEECC----CCCCeEEEEECC-EECCC-----CCceEEE-ECCcEEEeCCCHHHC-EEEEEEEEec
Confidence            4567889999999999975    267889999998 56642     2356655 567899999999999 9999999987


Q ss_pred             C
Q psy12724        152 L  152 (167)
Q Consensus       152 ~  152 (167)
                      .
T Consensus        71 ~   71 (87)
T cd05873          71 S   71 (87)
T ss_pred             c
Confidence            3

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.53  E-value=1.1e-13  Score=94.59  Aligned_cols=80  Identities=19%  Similarity=0.294  Sum_probs=57.8

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-eecCCceEEEcc----CCeEEEeecCcCCCCcceEE
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-TESTDGKYLVLP----SGELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-~~~~~~r~~~~~----~g~L~I~~v~~~D~~G~Y~C  146 (167)
                      ..|+.+.+|++|.|+|.+.+   .|.|.+.|+|+++..+.... ....+.|+.+..    ++.|.|+|++.+|+ |.|+|
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g---~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~-G~YtC   79 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKE---HDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDE-GEYTC   79 (95)
T ss_pred             cccEEEecCCcEEEEEEEeC---CCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccC-EEEEE
Confidence            35788999999999999984   58899999998743221100 001245665432    35899999999999 99999


Q ss_pred             EeeecCcce
Q psy12724        147 RTKHRLTGE  155 (167)
Q Consensus       147 ~a~n~~~~~  155 (167)
                      .+......+
T Consensus        80 ~~~t~~~~~   88 (95)
T cd05882          80 SIFTMPVRT   88 (95)
T ss_pred             EEEeecccc
Confidence            999855333

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.52  E-value=1.4e-13  Score=93.27  Aligned_cols=79  Identities=28%  Similarity=0.458  Sum_probs=57.0

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeec-----CcCCCCc
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDV-----GPEDGYK  142 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v-----~~~D~~G  142 (167)
                      +.-.+.+..+.+|+++.|.|.+.+   +|.|.++|+|++ ..+.... .....+....++|.|.+..+     +.+|+ |
T Consensus         4 i~~~p~~~~v~~G~~~~l~C~~~g---~P~p~i~W~k~g-~~l~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~-G   77 (100)
T cd07693           4 IVEHPSDLIVSKGDPATLNCKAEG---RPTPTIQWLKNG-QPLETDK-DDPRSHRIVLPSGSLFFLRVVHGRKGRSDE-G   77 (100)
T ss_pred             EEecCceeEEcCCCeEEEEeeCCc---CCCCEEEEEECC-EECcccc-CCCCcceEEecCCcEEEEEeeccCCCcCcC-E
Confidence            344456778899999999999984   599999999997 5553210 01133455566776554443     78998 9


Q ss_pred             ceEEEeeecC
Q psy12724        143 SYQCRTKHRL  152 (167)
Q Consensus       143 ~Y~C~a~n~~  152 (167)
                      .|+|.|.|.+
T Consensus        78 ~Y~C~a~N~~   87 (100)
T cd07693          78 VYVCVAHNSL   87 (100)
T ss_pred             EEEEEEEccc
Confidence            9999999998

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.52  E-value=1.2e-13  Score=92.17  Aligned_cols=74  Identities=24%  Similarity=0.477  Sum_probs=59.2

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcce
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKSY  144 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y  144 (167)
                      |.-.+.+..+.+|+++.|.|.+.+   .|.|.++|++++ ..+.      .+.++.+..   ...|.|.+++.+|+ |.|
T Consensus         3 ~~~~~~~~~v~~G~~~~l~c~~~~---~p~~~v~W~~~~-~~l~------~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y   71 (90)
T PF07679_consen    3 FTKKPKDVTVKEGESVTLECEVSG---NPPPTVTWYKNG-RPLT------SSQRYQIESDGGSSSLTIKNVTREDA-GTY   71 (90)
T ss_dssp             EEEESSEEEEETTSEEEEEEEEEE---SSSSEEEEEETT-EEEE------SSSSEEEEEETTEEEEEESSESGGGS-EEE
T ss_pred             EEEecCCEEEeCCCEEEEEEEEEe---CCCCcccccccc-ccee------eeeeeeeecccceeEEccCCCChhhC-EEE
Confidence            344456678899999999999984   488999999997 5664      244555443   34799999999999 999


Q ss_pred             EEEeeecC
Q psy12724        145 QCRTKHRL  152 (167)
Q Consensus       145 ~C~a~n~~  152 (167)
                      +|.|.|..
T Consensus        72 ~C~~~n~~   79 (90)
T PF07679_consen   72 TCVASNSS   79 (90)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEECC
Confidence            99999996

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.52  E-value=9.4e-14  Score=91.52  Aligned_cols=67  Identities=22%  Similarity=0.385  Sum_probs=54.4

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++..+.+|+++.|.|.+.+    +.|.++|+||+ .++.      .+.++.+ .++.|.|.+++.+|+ |.|+|.|.|..
T Consensus         2 ~~~~~~~G~~v~l~C~~~~----~~~~v~W~k~g-~~l~------~~~~~~~-~~~~L~I~~~~~~Ds-G~Y~C~a~n~~   68 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRD----DVQSINWTKDG-VQLG------ENNRTRI-TGEEVQIKDAVPRDS-GLYACVTSSPS   68 (79)
T ss_pred             CcEEecCCCCEEEEEEecC----CCceEEEeeCC-cCCC------CCceEEE-eCCEEEECCCChhhC-EEEEEEEeCCC
Confidence            4567889999999999974    34679999997 5663      2456655 357899999999999 99999999986

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.51  E-value=4.8e-14  Score=91.03  Aligned_cols=59  Identities=19%  Similarity=0.242  Sum_probs=47.0

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.|.|.+.|   .|.|.++|+|+++ .+..      +.......++.|.|++++.+|+ |.|+|.|.|..
T Consensus         1 ~~L~C~~~G---~P~P~v~W~k~~~-~~~~------~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~   59 (71)
T cd05876           1 LVLECIAEG---LPTPEVHWDRIDG-PLSP------NRTKKLNNNKTLQLDNVLESDD-GEYVCTAENSE   59 (71)
T ss_pred             CEEEEEeeE---ecCCeEEEEECCc-CCCC------CceeEEcCCCEEEEcccCHHhC-EEEEEEEEcCC
Confidence            479999984   5999999999974 4421      2222344678999999999998 99999999998

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.51  E-value=7.8e-14  Score=93.34  Aligned_cols=73  Identities=21%  Similarity=0.399  Sum_probs=52.6

Q ss_pred             CcEEEEeeeCCccCCcce--eEEEEeCCCeeeEEeeeecCCceEEE---c-cCCeEEEeecCcCCCCcceEEEeeecC--
Q psy12724         81 NSAVLKCHIPSFVADYVA--VESWISDQGEELFVDMTESTDGKYLV---L-PSGELHIRDVGPEDGYKSYQCRTKHRL--  152 (167)
Q Consensus        81 ~~a~l~C~~~~~~~~p~p--~i~W~k~~~~~l~~~~~~~~~~r~~~---~-~~g~L~I~~v~~~D~~G~Y~C~a~n~~--  152 (167)
                      +++.|.|.+.+   +|.|  .++|+||+ ..+...   ...+++..   . ..|.|.|.+++.+|+ |.|+|.|.|..  
T Consensus         1 ~~~~L~C~a~g---~P~p~~~v~W~~~g-~~i~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~D~-G~YtC~A~n~~g~   72 (85)
T cd05854           1 ENLTLQCHASH---DPTMDLTFTWSLDD-FPIDLD---KPNGHYRRMEVKETIGDLVIVNAQLSHA-GTYTCTAQTVVDS   72 (85)
T ss_pred             CcEEEEEEEec---CCCCCeEEEEEECC-eEcccc---CCCCcEEEEEecceEeEEEEccCChhhC-eEEEEEEecCCCC
Confidence            47899999984   4665  68999997 555321   12334422   1 357899999999999 99999999988  


Q ss_pred             -cceEEEeee
Q psy12724        153 -TGETRLSAT  161 (167)
Q Consensus       153 -~~~~~l~~~  161 (167)
                       +..+.|.+.
T Consensus        73 ~~~~~~L~V~   82 (85)
T cd05854          73 ASASATLVVR   82 (85)
T ss_pred             EEEEEEEEEE
Confidence             445566553

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.51  E-value=8.5e-14  Score=89.62  Aligned_cols=59  Identities=20%  Similarity=0.399  Sum_probs=46.7

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |+++.|.|.+.   |+|.|.++|+|++ ..+.      ...++. ..++.|.|.+++  |+ |.|+|.|.|.+
T Consensus         1 G~~v~L~C~a~---G~P~P~v~W~k~g-~~l~------~~~~~~-~~~~~L~i~~~~--d~-G~Y~C~A~N~~   59 (69)
T cd05739           1 GGSVNLTCVAV---GAPMPYVKWMKGG-EELT------KEDEMP-VGRNVLELTNIY--ES-ANYTCVAISSL   59 (69)
T ss_pred             CCeEEEEEEee---ecCCCEEEEEECC-EECC------Ccccee-cCccEEEEeccc--cC-eeEEEEEEeCC
Confidence            78999999998   5699999999997 4553      223333 245579999974  88 99999999998

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.51  E-value=8e-14  Score=92.47  Aligned_cols=70  Identities=20%  Similarity=0.375  Sum_probs=53.2

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE-ccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV-LPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~-~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.+..   ...++.. ..++.|.|.+++.+|+ |.|+|.|.|..
T Consensus         4 ~~v~~G~~~~L~C~~~g---~P~p~i~W~k~g-~~l~~~~---~~~~~~~~~~~~~l~i~~~~~~D~-G~Y~C~a~N~~   74 (85)
T cd05857           4 HAVPAANTVKFRCPAAG---NPTPTMRWLKNG-KEFKQEH---RIGGYKVRNQHWSLIMESVVPSDK-GNYTCVVENEY   74 (85)
T ss_pred             EEcCCCCEEEEEEEcCC---CCCCEEEEEECC-EECCCCC---ceeeeEEeCCceEEEEccCCcccC-EEEEEEEEeCC
Confidence            45678999999999984   599999999997 5553210   1112222 2345799999999999 99999999987

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.51  E-value=8.6e-14  Score=91.33  Aligned_cols=68  Identities=22%  Similarity=0.445  Sum_probs=50.5

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCC--eeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQG--EELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~--~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |+++.|.|.+.   |.|.|.++|+|++.  ..+.... .....++.....+.|.|.+++.+|+ |.|.|.|.|..
T Consensus         1 G~~v~l~C~~~---g~P~p~v~W~k~~~~~~~~~~~~-~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~   70 (81)
T cd05765           1 GETASFHCDVT---GRPPPEITWEKQVHGKENLIMRP-NHVRGNVVVTNIGQLVIYNAQPQDA-GLYTCTARNSG   70 (81)
T ss_pred             CCcEEEEeecc---ccCCCcEEEEecCCCCcceeecC-CcccCCEEEccccEEEEccCCcccC-EEEEEEEecCC
Confidence            78999999998   55999999999731  1111100 0012345566678999999999998 99999999987

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.51  E-value=7.2e-14  Score=91.82  Aligned_cols=66  Identities=23%  Similarity=0.378  Sum_probs=50.4

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEeee--ecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCc
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMT--ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT  153 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~--~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~  153 (167)
                      |+|.|.+.|   .|.|.++|+|+++... +...  ....+|+.+.++|.|.|++++.+|+ |.|.|.|.|...
T Consensus         1 v~l~C~~~G---~P~P~v~W~~~~~~~~-~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G   68 (79)
T cd05734           1 VTLNCSAEG---YPPPTIVWKHSKGRGH-PQHTHTCCLAGRIQLLSNGSLLIKHVLEEDS-GYYLCKVSNDVG   68 (79)
T ss_pred             CEeEeeCeE---eCCCEEEEEECCCccc-cccccccccCCCEEEecCCeEEECcCCcccC-EEEEEEEEeCCC
Confidence            579999985   5999999999753211 1000  0135677777889999999999998 999999999873

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.50  E-value=1.1e-13  Score=90.71  Aligned_cols=60  Identities=28%  Similarity=0.562  Sum_probs=47.7

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc-CCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP-SGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~-~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++|.|.+.   |.|.|.++|+|++ ..+.+     ...++.+.. ++.|.|.+++.+|+ |.|+|.|.|.+
T Consensus         1 v~L~C~~~---g~P~p~v~W~k~g-~~l~~-----~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~   61 (77)
T cd05760           1 VTLRCHID---GHPRPTYQWFRDG-TPLSD-----GQGNYSVSSKERTLTLRSAGPDDS-GLYYCCAHNAF   61 (77)
T ss_pred             CEEEEEee---ecCCCcEEEEECC-EECCC-----CCccEEEeCCCCEEEEeeCCcccC-EEEEEEEEeCC
Confidence            57999998   4599999999997 55532     234554443 46899999999998 99999999986

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.50  E-value=9.8e-14  Score=94.68  Aligned_cols=74  Identities=18%  Similarity=0.263  Sum_probs=55.0

Q ss_pred             CeEEEeCCcEEEEeeeCCcc--CCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         74 DEHVLKGNSAVLKCHIPSFV--ADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~--~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      ++.+.+|+.+.|.|.+.+..  .+|.|.++|+|++. .+....  ....|+.. .++.|.|.+++.+|+ |.|+|.+.|.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~-~~~~~~--~~~~r~~~-~~~~L~I~~~~~~Ds-G~Y~C~~~N~   82 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDG-KTPIPT--EERSRMHQ-QKDLLWFLPAALEDS-GLYTCVVRNS   82 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCC-CCcccc--cccceeee-cCCeEEEccCCcccC-eEEEEEEcCC
Confidence            46788999999999987410  04888999999974 331100  12344433 468999999999999 9999999998


Q ss_pred             C
Q psy12724        152 L  152 (167)
Q Consensus       152 ~  152 (167)
                      .
T Consensus        83 ~   83 (94)
T cd05756          83 T   83 (94)
T ss_pred             C
Confidence            7

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.50  E-value=1.6e-13  Score=93.05  Aligned_cols=72  Identities=22%  Similarity=0.374  Sum_probs=54.6

Q ss_pred             EEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC----eEEEeecCcCCCCcceE
Q psy12724         70 VNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG----ELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        70 c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g----~L~I~~v~~~D~~G~Y~  145 (167)
                      ..+.+..+..|+++.|.|.+.|   .|. .++|++.++..+.+      .+++.+..++    .|.|.+++.+|+ |.|+
T Consensus         5 v~p~~~~v~~G~~~~l~C~~~G---~p~-~i~W~~~~~~~~~~------~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~   73 (92)
T cd04977           5 IVPSQGEISVGESKFFLCQVIG---EPK-DISWFSPNGEKLVT------QQQISVVQNDDVRSTLTIYNANIEDA-GIYK   73 (92)
T ss_pred             EecCcEEECCCCeEEEEEEeEe---eCC-eEEEECCCCCEecc------CCCEEEEeCCCCEEEEEEecCCcccC-EEEE
Confidence            3456678899999999999985   464 89999854444432      2344443333    799999999998 9999


Q ss_pred             EEeeecC
Q psy12724        146 CRTKHRL  152 (167)
Q Consensus       146 C~a~n~~  152 (167)
                      |.|.|..
T Consensus        74 C~A~N~~   80 (92)
T cd04977          74 CVATDAK   80 (92)
T ss_pred             EEEEcCC
Confidence            9999986

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.50  E-value=1.3e-13  Score=93.43  Aligned_cols=76  Identities=20%  Similarity=0.400  Sum_probs=57.7

Q ss_pred             EecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC---CeEEEeecCcCCCCcceEEE
Q psy12724         71 NIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS---GELHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        71 ~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~---g~L~I~~v~~~D~~G~Y~C~  147 (167)
                      ...+..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.... ....+|+.+..+   +.|.|++++.+|+ |.|+|.
T Consensus         7 ~~~~~~~~~g~~v~l~C~~~g---~p~p~v~W~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~   80 (96)
T cd05732           7 YLENQTAVELEQITLTCEAEG---DPIPEITWRRAT-RNFSEGD-KSLDGRIVVRGHARVSSLTLKDVQLTDA-GRYDCE   80 (96)
T ss_pred             ecCceeEecCCcEEEEEEEeE---cCCCcEEEEECC-cccCCCC-ccccceEEEeCCccEEEEEECcCCcCcC-EEeEEE
Confidence            345678899999999999984   599999999987 3442110 001346655432   4799999999998 999999


Q ss_pred             eeecC
Q psy12724        148 TKHRL  152 (167)
Q Consensus       148 a~n~~  152 (167)
                      |.|..
T Consensus        81 a~N~~   85 (96)
T cd05732          81 ASNRI   85 (96)
T ss_pred             EEeCC
Confidence            99998

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.49  E-value=7.1e-14  Score=90.38  Aligned_cols=57  Identities=11%  Similarity=0.130  Sum_probs=46.2

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.|+|.+.|   .|.|.++|+||+ .++.      ...+  +..++.|.|.++..+|+ |.|+|.|.|.+
T Consensus         1 ~~~~c~v~G---~P~P~v~W~k~g-~~l~------~~~~--~~~~~~L~I~~v~~~D~-G~YtC~a~N~~   57 (70)
T cd05864           1 VKIPVKYYG---YPPPEVKWYKNG-QLIV------LNHT--FKRGVHLTIYEVTEKDA-GNYTVVLTNPI   57 (70)
T ss_pred             CEEEeEEEE---eCCCEEEEEECC-EECC------CCCE--EccCCEEEECcCCHHHC-EEEEEEEEECC
Confidence            478999985   599999999998 5653      1223  23456899999999998 99999999998

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.49  E-value=1.7e-13  Score=93.52  Aligned_cols=73  Identities=15%  Similarity=0.392  Sum_probs=53.8

Q ss_pred             CeEEE-eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC---CeEEEeecCcCCCCcceEEEee
Q psy12724         74 DEHVL-KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS---GELHIRDVGPEDGYKSYQCRTK  149 (167)
Q Consensus        74 ~~~v~-~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~---g~L~I~~v~~~D~~G~Y~C~a~  149 (167)
                      +..+. .|+++.|.|.+.   |.|.|.++|+|++ ..+.... ....+++.+..+   +.|.|++++.+|+ |.|+|.|.
T Consensus        10 ~~~~~~~g~~v~l~C~~~---G~P~P~v~W~~~~-~~~~~~~-~~~~~~~~v~~~~~~~~L~I~~v~~~D~-G~Y~C~A~   83 (97)
T cd05869          10 NQTAMELEEQITLTCEAS---GDPIPSITWRTST-RNISSEE-KTLDGHIVVRSHARVSSLTLKYIQYTDA-GEYLCTAS   83 (97)
T ss_pred             CceEEEcCCCEEEEEEee---EeCCCEEEEEECC-ccccCCc-cccCccEEEEcCccEEEEEEecCccCcC-EEEEEEEe
Confidence            34444 489999999998   4599999999986 4442210 012345555433   4799999999998 99999999


Q ss_pred             ecC
Q psy12724        150 HRL  152 (167)
Q Consensus       150 n~~  152 (167)
                      |..
T Consensus        84 N~~   86 (97)
T cd05869          84 NTI   86 (97)
T ss_pred             cCC
Confidence            998

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.49  E-value=1.2e-13  Score=89.35  Aligned_cols=59  Identities=15%  Similarity=0.214  Sum_probs=47.8

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCc
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT  153 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~  153 (167)
                      +.|.|.+.|   .|.|.++|+||+ ..+.      .+.++ ...++.|.|.+++.+|+ |.|+|.|.|...
T Consensus         1 ~~l~c~v~g---~P~p~v~W~k~g-~~l~------~~~~~-~~~~~~L~I~~v~~~D~-G~YtC~a~N~~g   59 (71)
T cd04976           1 VRLPVKVKA---YPPPEIQWYKNG-KLIS------EKNRT-KKSGHSLTIKDVTEEDA-GNYTVVLTNKQA   59 (71)
T ss_pred             CEEEeEEEE---eCCCEEEEEECC-EECC------CCCEE-EcCCCEEEECcCCHHHC-EEEEEEEEcCCc
Confidence            469999985   599999999997 5653      23344 45678999999999999 999999999883

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.49  E-value=1.5e-13  Score=91.47  Aligned_cols=73  Identities=22%  Similarity=0.397  Sum_probs=52.5

Q ss_pred             CcEEEEeeeCCccCCcce--eEEEEeCCCeeeEEeeeecCCceE----EEccCCeEEEeecCcCCCCcceEEEeeecC--
Q psy12724         81 NSAVLKCHIPSFVADYVA--VESWISDQGEELFVDMTESTDGKY----LVLPSGELHIRDVGPEDGYKSYQCRTKHRL--  152 (167)
Q Consensus        81 ~~a~l~C~~~~~~~~p~p--~i~W~k~~~~~l~~~~~~~~~~r~----~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~--  152 (167)
                      +++.|.|.+.+   +|.|  .++|+||+ ..+...   ..+.++    ....+|.|.|.+++.+|+ |.|+|.|.|..  
T Consensus         1 e~~~L~C~~~g---~P~p~i~~~W~~~g-~~i~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~~g~   72 (85)
T cd04970           1 ESITLQCHASH---DPTLDLTFTWSFNG-VPIDFD---KDGGHYRRVGGKDSNGDLMIRNAQLKHA-GKYTCTAQTVVDS   72 (85)
T ss_pred             CcEEEEEEEec---CCCCCeEEEEEECC-eEeecc---CCCccEEEEecccccceEEEccCCHHhC-eeeEEEEecCCCc
Confidence            47899999974   4766  56999997 555321   112222    223568999999999999 99999999976  


Q ss_pred             -cceEEEeee
Q psy12724        153 -TGETRLSAT  161 (167)
Q Consensus       153 -~~~~~l~~~  161 (167)
                       +..++|.+.
T Consensus        73 ~~~~~~l~V~   82 (85)
T cd04970          73 LSASADLIVR   82 (85)
T ss_pred             EEEEEEEEEE
Confidence             455666654

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.49  E-value=1.6e-13  Score=94.87  Aligned_cols=68  Identities=12%  Similarity=0.129  Sum_probs=53.6

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc---------cCCeEEEeecCcCCCCcce
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL---------PSGELHIRDVGPEDGYKSY  144 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~---------~~g~L~I~~v~~~D~~G~Y  144 (167)
                      ...+..|+.+.|.|.+.|+   |.|.++|+||+ .+|..      +.+....         -.+.|.|.+++.+|+ |.|
T Consensus        12 ~~~~~~~~~~~l~~~v~g~---P~P~v~W~kdg-~~l~~------~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~-G~Y   80 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAY---PPPQIRWLKDN-RTLIE------NLTEITTSEHNVQETRYVSKLKLIRAKEEDS-GLY   80 (101)
T ss_pred             eEEEecCCcEEEEEEEEEe---CCCceEEEECC-EECcC------CcceEEeccccccceeeccEEEEeeCCHHHC-EEE
Confidence            3577889999999999955   99999999998 56532      2222111         125799999999999 999


Q ss_pred             EEEeeecC
Q psy12724        145 QCRTKHRL  152 (167)
Q Consensus       145 ~C~a~n~~  152 (167)
                      +|.|.|..
T Consensus        81 tc~A~N~~   88 (101)
T cd05859          81 TALAQNED   88 (101)
T ss_pred             EEEEEcCC
Confidence            99999997

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.48  E-value=1.5e-13  Score=92.59  Aligned_cols=73  Identities=22%  Similarity=0.331  Sum_probs=50.1

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCC---CeeeEEeeeecCCceEEEcc----------CCeEEEeecCcCCCCcceEE
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQ---GEELFVDMTESTDGKYLVLP----------SGELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~---~~~l~~~~~~~~~~r~~~~~----------~g~L~I~~v~~~D~~G~Y~C  146 (167)
                      |+++.|.|.+.   |+|.|.++|+|++   +..+.+.    ...+..+..          .+.|.|++++.+|+ |.|+|
T Consensus         1 G~~v~L~C~~~---g~P~P~i~W~k~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C   72 (90)
T cd05858           1 GSTVEFVCKVY---SDAQPHIQWLKHVEKNGSKYGPD----GLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDA-GEYTC   72 (90)
T ss_pred             CCeEEEEEEEe---cCCCCEEEEEEecccCCcEeCCC----CCeeEEEeccCCceecCCceeEEEEccCCHHHC-EEEEE
Confidence            78999999998   4599999999852   1222210    111111111          14799999999999 99999


Q ss_pred             EeeecC---cceEEEee
Q psy12724        147 RTKHRL---TGETRLSA  160 (167)
Q Consensus       147 ~a~n~~---~~~~~l~~  160 (167)
                      .|.|..   ...+.|.+
T Consensus        73 ~A~N~~G~~~~~a~L~V   89 (90)
T cd05858          73 LAGNSIGISHHSAWLTV   89 (90)
T ss_pred             EEEeCCCcccceEEEEE
Confidence            999988   33445543

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.48  E-value=2.1e-13  Score=92.42  Aligned_cols=69  Identities=19%  Similarity=0.357  Sum_probs=54.1

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc-cC---CeEEEeecCcCCCCcceEEEe
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL-PS---GELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~-~~---g~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      ....+.+|+++.|.|.+.+   .|.|.+.|+|++ ..+.      .+.++.+. .+   +.|.|.+++.+|+ |.|+|.|
T Consensus         9 ~~v~v~eG~~v~L~C~v~g---~P~p~i~W~k~~-~~~~------~~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a   77 (92)
T cd05891           9 DVVTIMEGKTLNLTCTVFG---NPDPEVIWFKND-QDIE------LSEHYSVKLEQGKYASLTIKGVTSEDS-GKYSINV   77 (92)
T ss_pred             CcEEEcCCCEEEEEEEEEE---eCCCeEEEEECC-EECC------CCCCEEEEEcCCCEEEEEECCCChhhC-EEEEEEE
Confidence            3467889999999999974   589999999997 4443      23344332 22   2799999999998 9999999


Q ss_pred             eecC
Q psy12724        149 KHRL  152 (167)
Q Consensus       149 ~n~~  152 (167)
                      .|.+
T Consensus        78 ~N~~   81 (92)
T cd05891          78 KNKY   81 (92)
T ss_pred             EeCC
Confidence            9988

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.47  E-value=3.2e-13  Score=92.41  Aligned_cols=70  Identities=23%  Similarity=0.401  Sum_probs=55.3

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeeeecCCceEEEccC-------CeEEEeecCcCC-CCcce
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMTESTDGKYLVLPS-------GELHIRDVGPED-GYKSY  144 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~~~~~~r~~~~~~-------g~L~I~~v~~~D-~~G~Y  144 (167)
                      +..+.+|+++.|.|.+.|   .|.| .++|++++ ..+...    .++||.+..+       +.|.|.+++.+| + |.|
T Consensus        10 ~~~~~~G~~v~L~C~~~g---~P~P~~v~W~~~~-~~i~~~----~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~-G~Y   80 (98)
T cd05758          10 TQYAILGDKGRVECFIFS---TPPPDRIVWTWKE-NELESG----SSGRYTVETDPSPGGVLSTLTISNTQESDFQ-TSY   80 (98)
T ss_pred             cEEEeCCCcEEEEEEEcc---cCCCCEeEEEECC-EEccCC----CCCCEEEEEecCCCceEEEEEECCccccccc-eeE
Confidence            456789999999999984   5998 59999997 455321    2357776543       279999999955 7 999


Q ss_pred             EEEeeecC
Q psy12724        145 QCRTKHRL  152 (167)
Q Consensus       145 ~C~a~n~~  152 (167)
                      .|.|.|..
T Consensus        81 ~C~A~N~~   88 (98)
T cd05758          81 NCTAWNSF   88 (98)
T ss_pred             EEEEEcCC
Confidence            99999998

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.47  E-value=1.7e-13  Score=87.96  Aligned_cols=55  Identities=18%  Similarity=0.224  Sum_probs=45.2

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCc
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT  153 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~  153 (167)
                      +.|.|.+.|   .|.|.++|+||+ ..+.        .+   ...+.|.|.++..+|+ |.|+|.|+|...
T Consensus         1 ~~l~c~v~g---~P~P~v~W~kdg-~~l~--------~~---~~~~~L~i~~v~~~D~-G~YtC~a~N~~g   55 (67)
T cd05863           1 VKLPVKVAA---YPPPEFQWYKDG-KLIS--------GK---HSQHSLQIKDVTEASA-GTYTLVLWNSAA   55 (67)
T ss_pred             CEEEEEEEE---eCCCEEEEEECC-EECc--------cc---CCcCEEEECCCCHHHC-EEEEEEEEECCc
Confidence            479999985   499999999997 5552        11   1356899999999999 999999999983

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.47  E-value=1e-13  Score=90.11  Aligned_cols=64  Identities=19%  Similarity=0.126  Sum_probs=49.8

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCcceEE
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETR  157 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~~~~~  157 (167)
                      +.|.|.+.|   .|.|.++|+||+ .++.+     ...++.. .++.|.|.+++.+|+ |.|+|.|+|....+++
T Consensus         1 ~~l~c~v~g---~P~P~v~W~kdg-~~l~~-----~~~~~~~-~~~~L~I~~v~~~D~-G~YtC~a~~~~~~~~~   64 (72)
T cd07702           1 YRLTPKVKA---FPAPEVIWLKDG-LPAAE-----KCSRYHV-DGYSLVIKDVTEEDA-GIYTILLGIKQYNLFK   64 (72)
T ss_pred             CeEEeeEEE---cCCCeEEEEECC-EECCC-----CCcEEEe-CCCEEEECcCCHHHC-EEEEEEEEccccceEe
Confidence            368999985   499999999997 55532     2345544 456899999999999 9999999998755543

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.46  E-value=2.4e-13  Score=88.57  Aligned_cols=70  Identities=24%  Similarity=0.442  Sum_probs=53.4

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC-eEEEeecCcCCCCcceEEEeeecC---cceEEE
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG-ELHIRDVGPEDGYKSYQCRTKHRL---TGETRL  158 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g-~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l  158 (167)
                      |.|.|.+.|   .|.|.++|+|++ ..+.+.    ...++.+..++ .|.|.+++.+|. |.|+|.|.|..   ...+.|
T Consensus         1 ~~L~C~v~g---~P~p~v~W~k~~-~~l~~~----~~~~~~~~~~~~~l~I~~~~~~D~-G~Y~C~a~N~~G~~~~~~~l   71 (76)
T cd05736           1 ASLRCHAEG---IPLPRLTWLKNG-MDITPK----LSKQLTLIANGSELHISNVRYEDT-GAYTCIAKNEAGVDEDISSL   71 (76)
T ss_pred             CEeEeEeee---cCCCEEEEEECC-EECCCC----CCccEEEeCCCCEEEECcCCcccC-EEEEEEEEcCCCCcceEEEE
Confidence            579999985   599999999997 455432    24567776666 599999999998 99999999987   334455


Q ss_pred             eee
Q psy12724        159 SAT  161 (167)
Q Consensus       159 ~~~  161 (167)
                      .+.
T Consensus        72 ~V~   74 (76)
T cd05736          72 FVE   74 (76)
T ss_pred             EEE
Confidence            443

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.46  E-value=3.3e-13  Score=87.44  Aligned_cols=60  Identities=22%  Similarity=0.288  Sum_probs=48.1

Q ss_pred             cEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         82 SAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        82 ~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++.|.|.+.|   .|.|.++|+|++ ..+.      .+.++.+..   .+.|.|.++..+|+ |.|+|.|.|..
T Consensus         1 ~~~l~c~~~G---~P~p~v~W~k~g-~~l~------~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~   63 (74)
T cd05748           1 SVRLEVPISG---RPTPTVTWSKDG-KPLK------LSGRVQIETTASSTSLVIKNAERSDS-GKYTLTLKNPA   63 (74)
T ss_pred             CEEEEeeEee---eCCCeEEEEECC-EEcC------CCCeEEEEECCCeEEEEECCCCcCcC-EEEEEEEECCC
Confidence            4789999984   599999999997 4552      244555543   34799999999998 99999999987

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.46  E-value=3.5e-13  Score=91.65  Aligned_cols=69  Identities=19%  Similarity=0.305  Sum_probs=54.3

Q ss_pred             eEEEeCCcEEEEeeeCCccC--CcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         75 EHVLKGNSAVLKCHIPSFVA--DYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~--~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.+.+|+++.|.|...+...  +|.|.++|+||+ .++.      ...+. +..++.|.|.++..+|+ |.|+|.|.|..
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~-~~i~------~~~~~-~~~~~~L~I~~v~~~Ds-G~YtC~~~n~~   75 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDC-KLLE------GDRKR-FVKGSKLLIQNVTEEDA-GNYTCKLTFTH   75 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECC-EECC------CCccE-EecCCEEEEeeCChhhC-EEEEEEEEecC
Confidence            57789999999998754322  378899999998 5653      12223 33778999999999999 99999999986

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.45  E-value=2.7e-13  Score=90.09  Aligned_cols=68  Identities=13%  Similarity=0.148  Sum_probs=53.2

Q ss_pred             EEecCeEEEeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEe
Q psy12724         70 VNIMDEHVLKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        70 c~~~~~~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      -.+++..+.+|+++.|.|.+.   |+|.| .|+|+||+ .++..        ++. ..++.|.|.++  .|+ |.|+|.|
T Consensus         3 ~~P~~~~v~~G~~v~l~C~a~---G~P~P~~I~W~k~g-~~l~~--------~~~-~~~s~L~i~~~--~d~-g~Y~C~A   66 (81)
T cd05749           3 VEPEDLSVTANTPFNLTCQAV---GPPEPVEILWWQGG-SPLGD--------PPA-PSPSVLNVPGL--NET-SKFSCEA   66 (81)
T ss_pred             CCCCceEEcCCCCEEEEEEee---eecCCeEEEEEECC-EECCC--------CCC-CCCCEEEEccc--cCC-eEEEEEE
Confidence            346678899999999999998   56999 69999997 45421        121 23568999987  588 9999999


Q ss_pred             eecCc
Q psy12724        149 KHRLT  153 (167)
Q Consensus       149 ~n~~~  153 (167)
                      +|.+.
T Consensus        67 ~N~~G   71 (81)
T cd05749          67 HNAKG   71 (81)
T ss_pred             EeccC
Confidence            99983

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.45  E-value=2.5e-13  Score=89.90  Aligned_cols=64  Identities=14%  Similarity=0.151  Sum_probs=46.8

Q ss_pred             EEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceE----EE----ccCCeEEEeecCcCCCCcceEEEeeecC-cce
Q psy12724         85 LKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY----LV----LPSGELHIRDVGPEDGYKSYQCRTKHRL-TGE  155 (167)
Q Consensus        85 l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~----~~----~~~g~L~I~~v~~~D~~G~Y~C~a~n~~-~~~  155 (167)
                      |+|.+.   |+|.|.++|+||+ ..|..      +.+.    ..    ...+.|.|.++..+|+ |.|+|+|+|.+ +++
T Consensus         3 i~~~v~---G~P~Pti~W~kng-~~l~~------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~-G~YtC~A~N~~G~~~   71 (79)
T cd05855           3 IPFTVK---GNPKPTLQWFHEG-AILNE------SEYICTKIHVINNTEYHGCLQLDNPTHLNN-GIYTLVAKNEYGEDE   71 (79)
T ss_pred             EEEEEe---EeCCCceEEEECC-EECCC------CcceeeeeEeecccceEEEEEECCCCcccC-EEEEEEEEcCCcccc
Confidence            688888   5699999999998 56632      2221    11    1235899999999999 99999999998 333


Q ss_pred             EEEe
Q psy12724        156 TRLS  159 (167)
Q Consensus       156 ~~l~  159 (167)
                      ..++
T Consensus        72 ~~~~   75 (79)
T cd05855          72 KNVS   75 (79)
T ss_pred             eEEE
Confidence            3433

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.45  E-value=3.5e-13  Score=88.37  Aligned_cols=61  Identities=23%  Similarity=0.398  Sum_probs=47.4

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE-ccCCeEEEeecCc----CCCCcceEEEeeecC
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV-LPSGELHIRDVGP----EDGYKSYQCRTKHRL  152 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~-~~~g~L~I~~v~~----~D~~G~Y~C~a~n~~  152 (167)
                      +.|.|.+.   |+|.|.++|+||+ ..+.+.    ...++.+ ..+|.|.|.++..    +|+ |.|+|.|.|..
T Consensus         1 i~l~C~~~---G~P~P~v~W~k~g-~~l~~~----~~~~~~~~~~~g~L~i~~~~~~~~~~d~-G~Y~C~A~N~~   66 (77)
T cd05733           1 IVIKCEAK---GNPPPTFSWTRNG-THFDPE----KDPRVTMKPDSGTLVIDNMNGGRAEDYE-GEYQCYASNEL   66 (77)
T ss_pred             CEEEeeCc---ccCCCeEEEEECC-eECCCC----CCCCEEEeCCCCEEEEeccCCCCCcCCC-EEEEEEEEcCC
Confidence            57999998   5699999999997 455321    2345544 3578999999864    798 99999999998

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.44  E-value=3.4e-13  Score=89.56  Aligned_cols=66  Identities=11%  Similarity=0.120  Sum_probs=48.8

Q ss_pred             EEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE----------ccCCeEEEeecCcCCCCcceEEEeeecC-c
Q psy12724         85 LKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV----------LPSGELHIRDVGPEDGYKSYQCRTKHRL-T  153 (167)
Q Consensus        85 l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~----------~~~g~L~I~~v~~~D~~G~Y~C~a~n~~-~  153 (167)
                      |+|.+.   |+|.|.++|+||+ ..+.+      +.++..          ...+.|.|.+++.+|+ |.|+|.|+|.+ .
T Consensus         3 i~~~v~---G~P~P~v~W~k~g-~~i~~------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~-G~YtC~A~N~~G~   71 (81)
T cd04971           3 IPFTVR---GNPKPTLTWYHNG-AVLNE------SDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNN-GNYTLVASNEYGQ   71 (81)
T ss_pred             EEEEeE---eeCCCcEEEEECC-EECcC------CCceeEEEEeecccccccEEEEEECCCCcccC-eEEEEEEEeCCCC
Confidence            689988   4599999999997 56642      121111          1245799999999998 99999999998 4


Q ss_pred             ceEEEeee
Q psy12724        154 GETRLSAT  161 (167)
Q Consensus       154 ~~~~l~~~  161 (167)
                      .+..++++
T Consensus        72 ~~~~~~~~   79 (81)
T cd04971          72 DSKSISAH   79 (81)
T ss_pred             eeeEEEee
Confidence            45555554

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.43  E-value=4.3e-13  Score=87.91  Aligned_cols=67  Identities=24%  Similarity=0.362  Sum_probs=51.0

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+..|+++.|.|.+.+   .|.|.++|+|++ ..+.+     .........++.|.|.+++.+|+ |.|+|.|.|..
T Consensus         5 ~~~~G~~v~L~C~~~g---~p~p~i~W~k~~-~~~~~-----~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~N~~   71 (82)
T cd05856           5 ARPVGSSVRLKCVASG---NPRPDITWLKDN-KPLTP-----TEIGESRKKKWTLSLKNLKPEDS-GKYTCHVSNRA   71 (82)
T ss_pred             eccCCCeEEEEEEeeE---eCCCcEEEEECC-cCCcC-----CccceecCceEEEEEccCChhhC-EEEEEEEEcCC
Confidence            3557999999999984   588999999997 34432     11112222346899999999998 99999999987

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.43  E-value=4.5e-13  Score=85.74  Aligned_cols=58  Identities=28%  Similarity=0.381  Sum_probs=45.4

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEE-EccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYL-VLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~-~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.|.|.+.|   .|.|.++|+|++. .+.       .++.. ...++.|.|.+++.+|+ |.|+|.|.|..
T Consensus         1 v~l~C~~~g---~P~p~v~W~k~~~-~~~-------~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~N~~   59 (71)
T cd05731           1 LLLECIAEG---LPTPEISWIKIGG-ELP-------ADRTKFENFNKTLKIDNVSEEDD-GEYRCTASNSL   59 (71)
T ss_pred             CEEEEEeeE---ecCCeEEEEECCe-ECC-------CCceeEecCCCEEEECCCCHHHC-EEEEEEEEeCC
Confidence            479999984   5999999999973 442       12222 23356899999999998 99999999988

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.43  E-value=7.5e-13  Score=86.93  Aligned_cols=62  Identities=23%  Similarity=0.386  Sum_probs=47.3

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE-ccCCeEEEeecCc----CCCCcceEEEeeecCc
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV-LPSGELHIRDVGP----EDGYKSYQCRTKHRLT  153 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~-~~~g~L~I~~v~~----~D~~G~Y~C~a~n~~~  153 (167)
                      +.|.|.+.   |+|.|.++|+||+ ..+..    ..+.++.+ ..+|.|.|.+++.    .|+ |.|+|.|+|...
T Consensus         1 ~~l~C~~~---G~P~P~v~W~k~g-~~~~~----~~~~~~~~~~~~~~L~i~~~~~~~~~~d~-G~Y~C~A~N~~G   67 (77)
T cd05875           1 IIIECEAK---GNPVPTFQWTRNG-KFFNV----AKDPRVSMRRRSGTLVIDFSGGGRPEDYE-GEYQCFARNNLG   67 (77)
T ss_pred             CEEEEecc---ccCCCEEEEEECC-EEccC----cCCCcEEEeCCCceEEEeccCCCCCCCCC-EEEEEEEEeccc
Confidence            47999998   5599999999997 44421    13455655 3678999998753    468 999999999983

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.41  E-value=1e-12  Score=86.24  Aligned_cols=61  Identities=21%  Similarity=0.346  Sum_probs=46.7

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc-cCCeEEEeecCcC----CCCcceEEEeeecC
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL-PSGELHIRDVGPE----DGYKSYQCRTKHRL  152 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~-~~g~L~I~~v~~~----D~~G~Y~C~a~n~~  152 (167)
                      +.|.|.+.   |+|.|.++|+||+ ..+..    ....++.+. .+|.|.|..+..+    |+ |.|+|.|.|..
T Consensus         1 ~~l~C~a~---G~P~P~i~W~k~g-~~l~~----~~~~~~~~~~~~g~l~i~~~~~~~~~~d~-G~Y~C~A~N~~   66 (77)
T cd05874           1 IVIQCEAK---GKPPPSFSWTRNG-THFDI----DKDPKVTMKPNTGTLVINIMNGEKAEAYE-GVYQCTARNER   66 (77)
T ss_pred             CEEEeeCc---ccCCCeEEEEECC-eECCC----cCCCCEEEeCCCceEEEeccccCCCCCCC-EEEEEEEEcCC
Confidence            47999998   5699999999997 45421    123445444 4789999988754    88 99999999987

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.40  E-value=1.7e-12  Score=88.65  Aligned_cols=77  Identities=19%  Similarity=0.342  Sum_probs=55.6

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEe-eeecCCceEEEc----cCCeEEEeecCcCCCCcceEE
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVD-MTESTDGKYLVL----PSGELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~-~~~~~~~r~~~~----~~g~L~I~~v~~~D~~G~Y~C  146 (167)
                      .++..+.+|++|.|+|.+.+   .|.|.+.|++.++..+... .....++|+.+.    .+..|.|++++.+|+ |.|.|
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~---~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C   79 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQ---NDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDE-GQYTC   79 (95)
T ss_pred             cceEEEecCCcEEEEEEEec---CCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccC-EEEEE
Confidence            45678999999999999984   5889999987543222211 000124677653    234799999999999 99999


Q ss_pred             EeeecC
Q psy12724        147 RTKHRL  152 (167)
Q Consensus       147 ~a~n~~  152 (167)
                      .+.+..
T Consensus        80 ~~~t~~   85 (95)
T cd07701          80 SLFTMP   85 (95)
T ss_pred             EeEeec
Confidence            999853

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.39  E-value=2.2e-12  Score=90.21  Aligned_cols=72  Identities=18%  Similarity=0.242  Sum_probs=53.6

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc--c-----CCeEEEeecC-cCCCCcceEEEeee
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL--P-----SGELHIRDVG-PEDGYKSYQCRTKH  150 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~--~-----~g~L~I~~v~-~~D~~G~Y~C~a~n  150 (167)
                      .|.++.|.|.+.   |+|.|.++|+||+ ..+..     .+.||.+.  .     ++.|.|.++. .+|. |.|+|.|.|
T Consensus        22 ~g~~v~L~C~a~---G~P~p~i~W~k~g-~~l~~-----~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~-G~Y~C~A~N   91 (109)
T cd05773          22 GSSDANLVCQAQ---GVPRVQFRWAKNG-VPLDL-----GNPRYEETTEHTGTVHTSILTIINVSAALDY-ALFTCTAHN   91 (109)
T ss_pred             CCCEEEEEEECc---ccCCCEEEEEECC-EECCC-----CCCeEEEEeeccCccceeEEEECcCCccCCC-EEEEEEEEe
Confidence            478999999998   4699999999997 55531     23455422  1     3579999997 6997 999999999


Q ss_pred             cC---cceEEEee
Q psy12724        151 RL---TGETRLSA  160 (167)
Q Consensus       151 ~~---~~~~~l~~  160 (167)
                      .+   +..+.|.+
T Consensus        92 ~~G~~~~~i~L~~  104 (109)
T cd05773          92 SLGEDSLDIQLVS  104 (109)
T ss_pred             CCccCcEEEEEEe
Confidence            98   44455554

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.37  E-value=2.5e-12  Score=85.50  Aligned_cols=67  Identities=24%  Similarity=0.335  Sum_probs=53.3

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++..+.+|++++|.|.+.+  +.|.|.+.|+|++. .+.       . +. ...++.|.|.+++.+|+ |.|.|.|.|..
T Consensus         9 ~~~~v~~G~~v~L~C~~~~--~~~~~~i~W~~~~~-~~~-------~-~~-~~~~~~L~I~~v~~~Ds-G~Y~C~a~n~~   75 (85)
T cd05754           9 RSQEVRPGADVSFICRAKS--KSPAYTLVWTRVGG-GLP-------S-RA-MDFNGILTIRNVQLSDA-GTYVCTGSNML   75 (85)
T ss_pred             CceEEcCCCCEEEEEEcCC--CCCCcEEEEEECCC-cCC-------C-cc-cccCCEEEECCCCHHHC-EEEEEEEeccC
Confidence            4567889999999999864  24888999999873 331       1 11 23468999999999999 99999999987

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.35  E-value=2.6e-12  Score=86.62  Aligned_cols=65  Identities=20%  Similarity=0.411  Sum_probs=50.5

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecC-cCCCCcceEEEeeecCc
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVG-PEDGYKSYQCRTKHRLT  153 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~-~~D~~G~Y~C~a~n~~~  153 (167)
                      .|+++.|.|.+.   |+|.|.++|+|++ ..+...    ...++.. .+|.|.|.++. .+|+ |.|+|.|+|...
T Consensus        18 ~~~~~~l~C~~~---g~p~p~i~W~k~~-~~l~~~----~~~~~~~-~~~~L~i~~~~~~~d~-G~Y~C~a~N~~G   83 (91)
T cd04967          18 DEGKVSLNCRAR---GSPPPTYRWLMNG-TEIDDE----PDSRYSL-VGGNLVISNPSKAKDA-GRYQCLASNIVG   83 (91)
T ss_pred             CCCEEEEEEeee---EcCCCEEEEEECC-EECCCC----CCCCEEE-ECCEEEEecCCccCCC-EEEEEEEEcCCC
Confidence            456799999997   5699999999997 455211    2345543 57899999987 4998 999999999973

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.35  E-value=5.9e-12  Score=83.00  Aligned_cols=69  Identities=17%  Similarity=0.290  Sum_probs=52.7

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeee
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      ++...+.+|++++|.|.+.+.   |. +.++|+||+ ..+.             ..++.|.|.++ .+|+ |.|+|.|.|
T Consensus         7 P~~~~v~~G~~V~L~C~~~~~---p~~~~~~W~kng-~~l~-------------~~~~~l~i~~~-~~ds-G~Y~C~a~~   67 (78)
T cd05752           7 PPWTTIFQGEKVTLTCNGFNS---PEQNSTQWYHNG-KLLE-------------TTTNSYRIRAA-NNDS-GEYRCQTQG   67 (78)
T ss_pred             CCCeEeeCCCCEEEEEeCCCC---CCCccEEEEECC-EEee-------------ccCCeEEEeec-ccCC-EEeEEECCC
Confidence            455688999999999999853   54 468999997 4442             13568999999 9999 999999999


Q ss_pred             cC-cceEEEe
Q psy12724        151 RL-TGETRLS  159 (167)
Q Consensus       151 ~~-~~~~~l~  159 (167)
                      .. +..++|+
T Consensus        68 ~~~S~~v~l~   77 (78)
T cd05752          68 SSLSDPVHLE   77 (78)
T ss_pred             CcCCCCEEEe
Confidence            75 4444443

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.34  E-value=7.4e-12  Score=83.97  Aligned_cols=70  Identities=29%  Similarity=0.443  Sum_probs=52.4

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ...+.+|+++.|+|.+.+    |.+.+.|+|++ ..+....  ....++... .+.|.|.+++.+|+ |.|.|.|.|..
T Consensus         5 ~~~v~~g~~v~L~C~~~~----p~~~i~W~k~~-~~~~~~~--~~~~~~~~~-~~~L~I~~~~~~D~-G~Y~C~a~~~~   74 (89)
T cd04979           5 VVTVVEGNSVFLECSPKS----NLASVVWLFQG-GPLQRKE--EPEERLLVT-EDGLLIRSVSPADA-GVYTCQSVEHG   74 (89)
T ss_pred             EEEEECCCcEEEEEeCCC----CCceEEEEECC-ccccccc--CcCceEEEc-CCCEEEccCCHHHC-EEEEEEEecCc
Confidence            456789999999999863    77789999997 3442210  012455554 45699999999999 99999999875

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.30  E-value=2.7e-11  Score=82.23  Aligned_cols=76  Identities=20%  Similarity=0.379  Sum_probs=54.6

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEe-eeecCCceEEEcc----CCeEEEeecCcCCCCcceEEE
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVD-MTESTDGKYLVLP----SGELHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~-~~~~~~~r~~~~~----~g~L~I~~v~~~D~~G~Y~C~  147 (167)
                      ++..+.+|++|.|.|.+.+   .|.+.+.|++.++..+... .....++||.+..    +..|.|++++.+|+ |.|.|.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~---~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~   80 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKN---NDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDE-GRYTCS   80 (95)
T ss_pred             CcEEEcCCCCEEEEEEECC---CCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccC-EEEEEE
Confidence            4567899999999999974   4778899987543332211 0001246776632    34799999999999 999999


Q ss_pred             eeecC
Q psy12724        148 TKHRL  152 (167)
Q Consensus       148 a~n~~  152 (167)
                      +.+..
T Consensus        81 ~~~~~   85 (95)
T cd05717          81 LYTMP   85 (95)
T ss_pred             EecCC
Confidence            99865

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.30  E-value=1e-11  Score=80.81  Aligned_cols=64  Identities=25%  Similarity=0.386  Sum_probs=46.2

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.|.|.+.+  +.|.|.++|+|++ ..+....  ....++.+..   .+.|.|.+++.+|+ |.|+|.|.|..
T Consensus         1 ~~L~C~a~~--~~p~~~~~W~~~g-~~i~~~~--~~~~~~~~~~~~~~~~L~I~~~~~~Ds-G~Y~C~a~N~~   67 (76)
T cd05895           1 LVLRCETVS--EYPSLRFKWFKNG-KEIGAKN--KPDNKIKIRKKKKSSELQISKASLADN-GEYKCMVSSKL   67 (76)
T ss_pred             CEEEEeccc--CCCCCceEEEECC-cccccCC--CCCceEEEEeCCcEEEEEECcCCcccC-EEEEEEEEeCC
Confidence            479999863  3488899999987 4553210  1123443332   35799999999999 99999999998

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.27  E-value=1.5e-11  Score=79.35  Aligned_cols=61  Identities=26%  Similarity=0.384  Sum_probs=45.3

Q ss_pred             EEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCce-EEEc---cCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         84 VLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGK-YLVL---PSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        84 ~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r-~~~~---~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .|.|.+.+  +.|.|.++|+|++ ..+...    ...+ +.+.   ..+.|.|.+++.+|+ |.|+|.|.|.+
T Consensus         2 ~l~C~~~g--~~P~p~~~W~k~g-~~l~~~----~~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~N~~   66 (75)
T cd05750           2 VLKCEATS--EYPSLRFKWFKDG-KELNRK----NKPRNIKIRNKKKNSELQINKAKLADS-GEYTCVVENIL   66 (75)
T ss_pred             EEEEEccC--CCCCceEEEEcCC-eecccc----CCcceEEEEecCceEEEEEccCCcccC-eEEEEEEEEcC
Confidence            68999985  2599999999987 555321    1111 1121   245799999999998 99999999998

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.25  E-value=1.9e-11  Score=81.15  Aligned_cols=68  Identities=18%  Similarity=0.194  Sum_probs=46.6

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc----cCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL----PSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~----~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |+++.|.|.+.+. .+|.|.++|.+++. .+....  ....+....    ..+.|.|.+++.+|+ |.|+|.|.|..
T Consensus         1 Ge~~~L~C~~~g~-~~~~~~i~W~~~~~-~~~~~~--~~~~~~~~~~~~~~~s~L~I~~v~~~Ds-G~Y~C~a~n~~   72 (84)
T cd05742           1 GETLVLNCTVLTE-LNEGVDFQWTYPGK-KRGRGK--SMVTRQSLSEATELSSTLTIPNATLKDS-GTYTCAASSGT   72 (84)
T ss_pred             CCeEEEEEEEEeC-CCccEEEEEecCCc-ccCCce--EeecccccccceEEEEEEEECCCChhhC-EEEEEEEccCC
Confidence            7899999999742 22889999998763 221100  001111111    135799999999999 99999999987

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.25  E-value=5e-11  Score=80.77  Aligned_cols=70  Identities=19%  Similarity=0.340  Sum_probs=50.0

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-eeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-EELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.+.+|++|.|+|...    .|.|.++|+|++. .......  ..+.|+.. .++.|.|++++++|+ |.|+|.|.|..
T Consensus         6 ~~~~eG~~v~L~C~~~----~p~p~v~Wykq~~g~~~~~~~--~~~~r~~~-~~~~L~I~~~~~~Ds-G~Y~C~a~~~~   76 (91)
T cd05871           6 VYGVENNSTFLECLPK----SPQASVKWLFQRGGDQRKEEV--KTEERLIH-TERGLLLRSLQRSDA-GVYTCTAVEHS   76 (91)
T ss_pred             EEEecCCcEEEEEECC----CCCceEEEEEECCCCCccccc--cccccEEE-ecCeEEEeeCChhHC-EEEEEEEEccC
Confidence            3578999999999953    3888999998432 1111100  02356654 457799999999999 99999998643

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.22  E-value=7.4e-11  Score=72.08  Aligned_cols=62  Identities=27%  Similarity=0.496  Sum_probs=48.0

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +|+++.|.|.+.+   .|.+.+.|+|++ ..+.       ........++.|.|.+++.+|+ |.|+|.+.|..
T Consensus         1 ~g~~~~l~C~~~~---~~~~~v~W~~~~-~~~~-------~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~~~n~~   62 (63)
T smart00408        1 EGQSVTLTCPAEG---DPVPNITWLKDG-KPLP-------ESNRLSASGSTLTIKSVSLEDS-GEYTCVAENSA   62 (63)
T ss_pred             CCceEEEEeeCcc---CCCCeEEEEECC-EECC-------CCCEEecCCcEEEEeeCCcccC-EEEEEEEecCC
Confidence            4889999999763   478889999987 3432       1222334567899999999998 99999999864

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.19  E-value=1e-10  Score=77.83  Aligned_cols=65  Identities=22%  Similarity=0.249  Sum_probs=51.0

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ....+.+|++++|.|.+..  +.+.+.+.|+|++ ..+..           ...++.|.|.+++.+|+ |.|+|.|.|..
T Consensus         7 p~~~V~~G~~vtL~C~~~~--~~~~~~~~w~k~g-~~~~~-----------~~~~~~l~I~~~~~~ds-G~Y~C~~~~~~   71 (83)
T cd05753           7 PSRVVFEGEPLVLRCHGWK--NKPVYKVTYYRDG-KAKKY-----------SHSNSNLSIPQATLSDS-GSYHCSGIIGS   71 (83)
T ss_pred             CcceecCCCCEEEEeeCCC--CCcceEEEEEECC-eEccc-----------cCCCceEEECccCHHHC-EEEEEEEEeCC
Confidence            3456889999999999853  3467789999997 34321           11256899999999999 99999999987

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.16  E-value=2.8e-10  Score=74.65  Aligned_cols=66  Identities=20%  Similarity=0.343  Sum_probs=49.8

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE----ccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV----LPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~----~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      .+..|+++.|.|.+.+   .|.|.++|+|++ ..+..      +.++..    .....|.|.++..+|+ |.|.|.|.|.
T Consensus         5 ~~~~G~~~~l~C~~~~---~p~~~v~W~k~~-~~~~~------~~~~~~~~~~~~~~~l~i~~~~~~d~-g~Y~C~~~n~   73 (85)
T cd05729           5 AVPAGSTVRLKCPASG---NPRPTITWLKDG-KPFKK------EHRIGGYKVRKKKWTLILESVVPSDS-GKYTCIVENK   73 (85)
T ss_pred             EecCCCcEEEEEEcCC---CCCCeEEEEECC-EECcc------cCceeEEEccCcEEEEEEeECCcccC-EEEEEEEEEC
Confidence            4567999999999985   488899999997 44431      111111    1224699999999998 9999999998


Q ss_pred             C
Q psy12724        152 L  152 (167)
Q Consensus       152 ~  152 (167)
                      .
T Consensus        74 ~   74 (85)
T cd05729          74 Y   74 (85)
T ss_pred             C
Confidence            7

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.14  E-value=2.5e-10  Score=77.91  Aligned_cols=73  Identities=18%  Similarity=0.283  Sum_probs=50.0

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeE---Ee----eeecCCceEEEc----cCC--eEEEeecCcCCCCc
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELF---VD----MTESTDGKYLVL----PSG--ELHIRDVGPEDGYK  142 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~---~~----~~~~~~~r~~~~----~~g--~L~I~~v~~~D~~G  142 (167)
                      .+.+|++|+|+|.+.   ++|.+.+.|++++...+.   +.    ......+|+...    .+|  .|.|++++.+|+ |
T Consensus         3 ~~~~G~~VtL~C~~s---~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDs-g   78 (94)
T cd07690           3 LGKKGDTAELPCTAS---QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDS-D   78 (94)
T ss_pred             EeeCCCCEEEEEEeC---CCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHC-E
Confidence            467899999999997   458899999977532211   00    000112233222    233  499999999999 9


Q ss_pred             ceEEEeeecC
Q psy12724        143 SYQCRTKHRL  152 (167)
Q Consensus       143 ~Y~C~a~n~~  152 (167)
                      .|.|.+.|+.
T Consensus        79 tY~C~v~~~~   88 (94)
T cd07690          79 TYICEVEDKK   88 (94)
T ss_pred             EEEEEECCcc
Confidence            9999999986

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.14  E-value=5.5e-10  Score=76.75  Aligned_cols=72  Identities=24%  Similarity=0.367  Sum_probs=54.2

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeeeecCCceEEEcc----CC---eEEEeecCcCC-CCcc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMTESTDGKYLVLP----SG---ELHIRDVGPED-GYKS  143 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~~~~~~r~~~~~----~g---~L~I~~v~~~D-~~G~  143 (167)
                      ..+.+.+|++|.|.|.+.+.   |.| .|.|..++ ..|...    ..+||.+..    +|   .|.|.++..+| . |.
T Consensus         9 ~s~~~~~G~~~~L~C~~~s~---P~P~~i~W~w~~-~~i~~~----~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~-g~   79 (98)
T cd05898           9 QVQYAVRGERGKVKCFIGST---PPPDRIAWAWKE-NVLESG----TSERYTVERTSTGSGVLSTLTINNIMEADFQ-TH   79 (98)
T ss_pred             ceEEEeCCCcEEEEEEEccC---CCCcEEEEEEcc-ccccCC----CCCCEEEEEEccCCCcEEEEEECCCccccCC-cE
Confidence            34678899999999999743   655 56888876 344321    256887753    23   69999998878 6 89


Q ss_pred             eEEEeeecCc
Q psy12724        144 YQCRTKHRLT  153 (167)
Q Consensus       144 Y~C~a~n~~~  153 (167)
                      |.|.|.|.+.
T Consensus        80 Y~C~a~N~~G   89 (98)
T cd05898          80 YNCTAWNSFG   89 (98)
T ss_pred             EEEEEEeCCc
Confidence            9999999983

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.14  E-value=2.6e-10  Score=75.96  Aligned_cols=66  Identities=17%  Similarity=0.300  Sum_probs=45.7

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |++++|.|.+.+   .|.|.++|.+++. ......  ....+..+..   ...|.|.+++.+|+ |.|.|.|+|..
T Consensus         1 Ge~~~l~C~~~~---~~~~~~~W~~~~~-~~~~~~--~~~~~~~~~~~~~~s~L~I~~~~~~Ds-G~Y~C~a~n~~   69 (84)
T cd05861           1 GETITVNCIVQG---NEVVDFSWTYPGK-DIGKGI--PEVEEVKVPATTLRSTLTFPHATVEDS-GTYECAAHEST   69 (84)
T ss_pred             CCcEEEEEEEEC---CCccEEEEEECCc-cCCCCc--eEEEEEecCCcEEEEEEEECCCCcCCC-EEEEEEEEECc
Confidence            789999999974   5889999998753 111000  0001111111   24799999999999 99999999975

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.13  E-value=1.6e-10  Score=77.37  Aligned_cols=66  Identities=27%  Similarity=0.473  Sum_probs=53.2

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      ++.++..|+++.|+|...+    +.+.++|++++ ..+.      .+.|+....+| |.|.+++++|+ |.|+|.+.-.
T Consensus         4 ~~~tv~~g~~v~L~C~~~s----~~A~v~W~~ng-~~l~------~~~r~~~~~~G-LlI~~~~~~ds-G~Y~C~s~E~   69 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRS----NLASPVWLFNG-TPLN------AQFSYRVGTDG-LLILVTSPEHS-GTYRCYSEEE   69 (85)
T ss_pred             eEEEEecCCCEEEECCCCC----CCccEEEEECC-cccC------CCcceEEeCCC-CEEEECCHhhC-EEEEEEEecC
Confidence            3568899999999999864    56688999998 4553      35677777666 77999999999 9999998743

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.12  E-value=1.8e-10  Score=72.14  Aligned_cols=59  Identities=25%  Similarity=0.360  Sum_probs=42.0

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc-CC----eEEEeecCcCCCCcceEEEe
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP-SG----ELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~-~g----~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      |+++.|.|.+..  +.|.+.++|.|++......       ....... ..    .|.|.+++.+|+ |.|+|.|
T Consensus         1 G~~v~L~C~~~~--~~~~~~~~W~~~~~~~~~~-------~~~~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSS--GPPPTTVTWSKNGQSLPEG-------STTNRSTNSVSSTSRLTISNVTPEDS-GTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEE--SSSTSEEEEEETTTTTSEE-------EEEEEEETTTEEEEEEEESSCTGGGT-EEEEEEE
T ss_pred             CCeEEEEeecCC--CCCCcEEEEEECCccccCc-------ceeEeecccceeeeEEEEccCCHHHC-EEEEEEC
Confidence            789999999911  4578899999998533221       1111111 22    299999999999 9999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.09  E-value=4.2e-10  Score=76.90  Aligned_cols=71  Identities=25%  Similarity=0.369  Sum_probs=52.6

Q ss_pred             eEEEeCCcEEEEeee-CCc-cCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc-CCeEEEeecCcCCCCcceEEEeeec
Q psy12724         75 EHVLKGNSAVLKCHI-PSF-VADYVAVESWISDQGEELFVDMTESTDGKYLVLP-SGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~-~~~-~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~-~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      +.+..|.+..|.|.- .++ ..++.|.++|+||+ .++..     ...++.... ++.|.|.++..+|+ |.|+|+|.|.
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~-~~l~~-----~~~~~~~~~~~~~L~I~~v~~~D~-G~YtC~~~~~   77 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDS-VLLDK-----DNEKFYSLKGSTYLHIIDVSLNDS-GYYTCKLQFT   77 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCC-EECcC-----CCcceEecCCCCEEEEEEcChhhC-EEEEEEEEEe
Confidence            567789999999963 211 13467789999997 55531     234555533 45899999999999 9999999997


Q ss_pred             C
Q psy12724        152 L  152 (167)
Q Consensus       152 ~  152 (167)
                      .
T Consensus        78 ~   78 (95)
T cd05897          78 H   78 (95)
T ss_pred             e
Confidence            6

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.07  E-value=1.8e-09  Score=73.81  Aligned_cols=77  Identities=17%  Similarity=0.371  Sum_probs=54.9

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEE-eeeecCCceEEEcc-CC---eEEEeecCcCCCCcceEEE
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFV-DMTESTDGKYLVLP-SG---ELHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~-~~~~~~~~r~~~~~-~g---~L~I~~v~~~D~~G~Y~C~  147 (167)
                      ++.++.+|++|.|.|.+.+.   ....+.|++-+...+.- ......+.||.... +|   .|.|++++.+|+ |.|.|.
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~---~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~-G~Y~Cq   80 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNN---DDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDE-GRYFCQ   80 (95)
T ss_pred             CceEEcCCCcEEEEEEEccC---CccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccC-EEEEEE
Confidence            56788999999999999854   35567999876322211 00012356777554 33   499999999999 999999


Q ss_pred             eeecCc
Q psy12724        148 TKHRLT  153 (167)
Q Consensus       148 a~n~~~  153 (167)
                      +.....
T Consensus        81 v~t~p~   86 (95)
T cd05881          81 LYTDPP   86 (95)
T ss_pred             EEcccC
Confidence            987653

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>smart00409 IG Immunoglobulin

Probab=99.06  E-value=2.4e-09  Score=68.79  Aligned_cols=69  Identities=28%  Similarity=0.501  Sum_probs=53.0

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC---CeEEEeecCcCCCCcceEEEeee
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS---GELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~---g~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      ...+..|+++.|.|.+.+.   +.+.+.|+++++..+.      ...++.....   ..|.|.+++.+|+ |.|.|.+.+
T Consensus         3 ~~~~~~g~~~~l~C~~~~~---~~~~~~W~~~~~~~v~------~~~~~~~~~~~~~~~l~i~~~~~~d~-G~Y~C~v~~   72 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGS---PPPEVTWYKQGGKLLA------ESGRFSVSRSGSNSTLTISNVTPEDS-GTYTCAATN   72 (86)
T ss_pred             cEEEeCCCeEEEEEEEccC---CCCeEEEEECCCEEcC------CCCcEEEEEcCCeeEEEEEeeccccC-eEEEEEEEc
Confidence            3567899999999999853   6788999998324442      2344544443   5899999999999 999999997


Q ss_pred             cC
Q psy12724        151 RL  152 (167)
Q Consensus       151 ~~  152 (167)
                      ..
T Consensus        73 ~~   74 (86)
T smart00409       73 SS   74 (86)
T ss_pred             CC
Confidence            65

>smart00410 IG_like Immunoglobulin like

Probab=99.06  E-value=2.4e-09  Score=68.79  Aligned_cols=69  Identities=28%  Similarity=0.501  Sum_probs=53.0

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC---CeEEEeecCcCCCCcceEEEeee
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS---GELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~---g~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      ...+..|+++.|.|.+.+.   +.+.+.|+++++..+.      ...++.....   ..|.|.+++.+|+ |.|.|.+.+
T Consensus         3 ~~~~~~g~~~~l~C~~~~~---~~~~~~W~~~~~~~v~------~~~~~~~~~~~~~~~l~i~~~~~~d~-G~Y~C~v~~   72 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGS---PPPEVTWYKQGGKLLA------ESGRFSVSRSGSNSTLTISNVTPEDS-GTYTCAATN   72 (86)
T ss_pred             cEEEeCCCeEEEEEEEccC---CCCeEEEEECCCEEcC------CCCcEEEEEcCCeeEEEEEeeccccC-eEEEEEEEc
Confidence            3567899999999999853   6788999998324442      2344544443   5899999999999 999999997


Q ss_pred             cC
Q psy12724        151 RL  152 (167)
Q Consensus       151 ~~  152 (167)
                      ..
T Consensus        73 ~~   74 (86)
T smart00410       73 SS   74 (86)
T ss_pred             CC
Confidence            65

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=99.05  E-value=1.6e-09  Score=74.90  Aligned_cols=89  Identities=18%  Similarity=0.224  Sum_probs=58.3

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC--ee--eEEeee---ecCCceEEEccC---C--eEEEeecCcCCCC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG--EE--LFVDMT---ESTDGKYLVLPS---G--ELHIRDVGPEDGY  141 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~--~~--l~~~~~---~~~~~r~~~~~~---g--~L~I~~v~~~D~~  141 (167)
                      ...+.+|++|.|+|.+.+.   +.+.+.|+|...  .+  +.....   +...+|+.+..+   +  .|.|++++.+|+ 
T Consensus         7 ~v~~~~G~~v~L~C~~~~~---~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds-   82 (109)
T cd04983           7 SLSVQEGENVTLNCNYSTS---TFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS-   82 (109)
T ss_pred             ceEEcCCCCEEEEEEECCC---CccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC-
Confidence            4578899999999999743   667889998531  11  111100   013467765432   2  699999999999 


Q ss_pred             cceEEEeeecCcceEEEeeeCCeee
Q psy12724        142 KSYQCRTKHRLTGETRLSATKGRLV  166 (167)
Q Consensus       142 G~Y~C~a~n~~~~~~~l~~~~~~~~  166 (167)
                      |.|.|.+.+.......+.-.+++|.
T Consensus        83 G~Y~C~~~~~~~~~~~~~g~gt~l~  107 (109)
T cd04983          83 AVYFCALSESGGTGKLTFGKGTRLT  107 (109)
T ss_pred             EEEEEEEecCCCCcceEECCCEEEE
Confidence            9999999976432333344455654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.03  E-value=2.4e-09  Score=74.45  Aligned_cols=78  Identities=18%  Similarity=0.296  Sum_probs=56.6

Q ss_pred             EecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC----eeeEEeee--------ecCCceEEEccCCeEEEeecCcC
Q psy12724         71 NIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG----EELFVDMT--------ESTDGKYLVLPSGELHIRDVGPE  138 (167)
Q Consensus        71 ~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~----~~l~~~~~--------~~~~~r~~~~~~g~L~I~~v~~~  138 (167)
                      .+.+..+.+|++|.|+|.-.   ..+.-.++|+|+..    ..+.....        +...+|..+.+||+|.|++++.+
T Consensus         4 e~~p~~~~~G~~V~L~v~~~---p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~   80 (105)
T cd05774           4 ELVPPQVAEGENVLLLVHNL---PENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQK   80 (105)
T ss_pred             eccCCcccCCCCEEEEecCC---CCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcc
Confidence            34456788999999999754   12444889999732    12221110        01357888899999999999999


Q ss_pred             CCCcceEEEeeecC
Q psy12724        139 DGYKSYQCRTKHRL  152 (167)
Q Consensus       139 D~~G~Y~C~a~n~~  152 (167)
                      |+ |.|+|.+.|..
T Consensus        81 D~-G~Y~~~v~~~~   93 (105)
T cd05774          81 DT-GFYTLQTITTN   93 (105)
T ss_pred             cC-EEEEEEEEeCC
Confidence            99 99999999875

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.99  E-value=4.6e-09  Score=70.29  Aligned_cols=69  Identities=17%  Similarity=0.342  Sum_probs=50.8

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-----------eecCCceEEEccCCeEEEeecCcCCCCcceEEEe
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-----------TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-----------~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      |++|+|+|....   .+...+.|+|++........           .+.-.+|+.+..++.|.|++++.+|+ |.|.|..
T Consensus         1 G~~VtL~c~~~~---~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~Ds-G~Y~c~v   76 (92)
T cd05741           1 GESVTLPVSNLP---ENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDS-GTYTLQI   76 (92)
T ss_pred             CCcEEEEcccCC---CCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhc-EEEEEEE
Confidence            789999999863   35668899997632110000           01124677787889999999999999 9999999


Q ss_pred             eecC
Q psy12724        149 KHRL  152 (167)
Q Consensus       149 ~n~~  152 (167)
                      .+..
T Consensus        77 ~~~~   80 (92)
T cd05741          77 ISTN   80 (92)
T ss_pred             EcCC
Confidence            8875

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.98  E-value=2.8e-09  Score=71.30  Aligned_cols=77  Identities=18%  Similarity=0.196  Sum_probs=48.7

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE----ccCCeEEEeecCcCCCCcceEEEeeecC---
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV----LPSGELHIRDVGPEDGYKSYQCRTKHRL---  152 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~----~~~g~L~I~~v~~~D~~G~Y~C~a~n~~---  152 (167)
                      |+++.|.|.+.+. .+|...+.|.+.+........  ....+...    .....|.|.+++.+|+ |.|+|.|.|..   
T Consensus         1 Ge~~~L~C~~~~~-~~~~~~~~W~~p~~~~~~~~~--~~~~~~~~~~~~~~~s~L~I~~~~~~Ds-G~Y~C~a~n~~~~~   76 (86)
T cd05862           1 GEKLVLNCTARTE-LNVGIDFQWDYPGKKEQRAKS--VSENRRSLQEHTELSSTLTIENVTLSDL-GRYTCTASSGQMIA   76 (86)
T ss_pred             CCcEEEEEEEEeC-CCCcEEEEEEcCCccccccee--cccccccccccceeeeEEEEecCCcccC-EEEEEEEeecceEe
Confidence            7899999999632 234567899887632211000  01111111    1235899999999999 99999999976   


Q ss_pred             cceEEEee
Q psy12724        153 TGETRLSA  160 (167)
Q Consensus       153 ~~~~~l~~  160 (167)
                      ...+.|.+
T Consensus        77 ~~~t~~~V   84 (86)
T cd05862          77 KNSTIVIV   84 (86)
T ss_pred             cccEEEEE
Confidence            44445544

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.95  E-value=9.3e-09  Score=66.28  Aligned_cols=63  Identities=24%  Similarity=0.476  Sum_probs=49.8

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      ++...+.+|+++.|.|.+.   ++|.+.+.|++++ ..+...             .+.|.|.++..+|+ |.|+|.|.|.
T Consensus         6 ~~~~~v~~g~~~~l~C~~~---~~p~~~~~w~~~~-~~~~~~-------------~~~~~~~~~~~~~~-g~y~C~~~~~   67 (80)
T PF13895_consen    6 SSPQSVEEGDSVTLTCSVS---GNPPPQVQWYKNG-SPINSS-------------QNGLFIPNVSPEDS-GNYTCRASNG   67 (80)
T ss_dssp             EESSEEETTSEEEEEEEEE---SSSSSEEEEEETT-EEEEEE-------------SSEEEESSEEGGGT-EEEEEEEEET
T ss_pred             ccceEEeCCCcEEEEEEEE---cccceeeeeeeee-eeeeee-------------eeeeeeeeeccccC-EEEEEEEEeC
Confidence            3446788999999999998   4577899999986 455321             11288899999998 9999999996


Q ss_pred             C
Q psy12724        152 L  152 (167)
Q Consensus       152 ~  152 (167)
                      .
T Consensus        68 ~   68 (80)
T PF13895_consen   68 S   68 (80)
T ss_dssp             T
T ss_pred             C
Confidence            5

...

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.93  E-value=6.5e-09  Score=71.10  Aligned_cols=89  Identities=19%  Similarity=0.237  Sum_probs=57.1

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCCC--ee--eEEee------eecCCceEEEccC---C--eEEEeecCcCCC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQG--EE--LFVDM------TESTDGKYLVLPS---G--ELHIRDVGPEDG  140 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~--~~--l~~~~------~~~~~~r~~~~~~---g--~L~I~~v~~~D~  140 (167)
                      .+.+|++|.|+|.+...  .+...+.|+|...  ..  +....      .+...+|+.+..+   +  .|.|++++.+|+
T Consensus         2 ~v~~G~~v~L~C~~~~~--~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~   79 (105)
T cd00099           2 SVSEGESVTLSCTYSGS--FSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDS   79 (105)
T ss_pred             eecCCCCEEEEEEEeCC--cCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHC
Confidence            46789999999998742  2456789998542  11  11110      0012356655432   2  799999999999


Q ss_pred             CcceEEEeeecCcceEEEeeeCCeeeC
Q psy12724        141 YKSYQCRTKHRLTGETRLSATKGRLVI  167 (167)
Q Consensus       141 ~G~Y~C~a~n~~~~~~~l~~~~~~~~~  167 (167)
                       |.|.|.+.+.........-.+++|.+
T Consensus        80 -G~Y~C~v~~~~~~~~~~~~~gt~l~v  105 (105)
T cd00099          80 -AVYYCAVSLSGGTYKLYFGQGTRLTV  105 (105)
T ss_pred             -EEEEEEEecCCCceeeEECCCEEEeC
Confidence             99999999875422333444556653

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.92  E-value=3.6e-09  Score=70.03  Aligned_cols=65  Identities=20%  Similarity=0.320  Sum_probs=48.7

Q ss_pred             cEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeec-CCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         82 SAVLKCHIPSFVADYVAVESWISDQGEELFVDMTES-TDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        82 ~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~-~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+.|.|...+  +.|.+.|+|+||+ ..|.....+. .+..|.  ..+.|.|.-....|. +.|+|.|.|..
T Consensus         1 ~~~L~C~s~~--skP~a~i~W~k~~-~~l~~~~~~~~~~~~~t--~~s~L~~~~~~~Ddg-~~~~C~A~n~a   66 (80)
T cd05885           1 EVELTCLSPR--SKPAATLRWYRDR-KELKGVISQQENGKTVS--VSNTIRFPVDRKDDG-AILSCEASHPA   66 (80)
T ss_pred             CEEEEEeCCC--ccCCCeEEEEECC-EECCCCcccccCCceEE--EEEEEEEEeeeccCC-cEEEEEEEChh
Confidence            3789999986  6899999999998 5663211111 122333  346899999999998 99999999987

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.89  E-value=1.7e-08  Score=70.13  Aligned_cols=89  Identities=18%  Similarity=0.257  Sum_probs=56.0

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-e-e-eEEeee--------ecCCceEEEccC----CeEEEeecCcC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-E-E-LFVDMT--------ESTDGKYLVLPS----GELHIRDVGPE  138 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~-~-l~~~~~--------~~~~~r~~~~~~----g~L~I~~v~~~  138 (167)
                      ...+.+|++|.|.|.+.+    +.+.+.|+|... . + +.-...        +...+|+.+..+    -.|.|++++.+
T Consensus         7 ~~~v~~G~~v~l~C~~~~----~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~   82 (110)
T cd05899           7 YLIKGRGQSVTLRCSQTS----GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPE   82 (110)
T ss_pred             ceEEcCCCcEEEEEEECC----CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChh
Confidence            457889999999999873    456789998641 1 1 110000        011356765432    26999999999


Q ss_pred             CCCcceEEEeeecCcceEEEeeeCCeeeC
Q psy12724        139 DGYKSYQCRTKHRLTGETRLSATKGRLVI  167 (167)
Q Consensus       139 D~~G~Y~C~a~n~~~~~~~l~~~~~~~~~  167 (167)
                      |+ |.|.|.+.+........--.+++|.|
T Consensus        83 Ds-g~Y~Ca~~~~~~~~~~~fg~gT~L~V  110 (110)
T cd05899          83 DS-AVYLCASSLGGGADEAYFGPGTRLTV  110 (110)
T ss_pred             hC-EEEEEEeeCCCCccceEECCCEEEeC
Confidence            99 99999998753212222234555543

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.87  E-value=2.9e-08  Score=67.63  Aligned_cols=72  Identities=22%  Similarity=0.278  Sum_probs=45.8

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeee----------ecCCceEEEcc------CCeEEEeecCcCCCCcc
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMT----------ESTDGKYLVLP------SGELHIRDVGPEDGYKS  143 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~----------~~~~~r~~~~~------~g~L~I~~v~~~D~~G~  143 (167)
                      |++|.|+|...+....-...+.|+|.+...+.....          +.-.+|+.+..      +..|.|.+++.+|+ |.
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~-G~   79 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDE-GL   79 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhC-EE
Confidence            789999999853211122367999865322211110          01124665432      24799999999999 99


Q ss_pred             eEEEeeecC
Q psy12724        144 YQCRTKHRL  152 (167)
Q Consensus       144 Y~C~a~n~~  152 (167)
                      |.|.+.|..
T Consensus        80 Y~C~v~~~~   88 (100)
T cd05713          80 YTCFFQSDG   88 (100)
T ss_pred             EEEEEecCC
Confidence            999999754

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.86  E-value=2.1e-08  Score=70.93  Aligned_cols=78  Identities=15%  Similarity=0.217  Sum_probs=50.2

Q ss_pred             CeEEEeCCcEEEEeeeCCcc-CCcceeEEEEeC-CCe----eeEEee-----e---ecCCceEEEc-----cCCeEEEee
Q psy12724         74 DEHVLKGNSAVLKCHIPSFV-ADYVAVESWISD-QGE----ELFVDM-----T---ESTDGKYLVL-----PSGELHIRD  134 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~-~~p~p~i~W~k~-~~~----~l~~~~-----~---~~~~~r~~~~-----~~g~L~I~~  134 (167)
                      +..+..|++|.|+|...... ..+...++|.+. .+.    .++...     .   +.-.+|....     .+.+|.|+|
T Consensus         7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n   86 (116)
T cd05879           7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN   86 (116)
T ss_pred             eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence            35678999999999985431 124578999432 110    111110     0   0112355442     345799999


Q ss_pred             cCcCCCCcceEEEeeecC
Q psy12724        135 VGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       135 v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++.+|. |.|+|.+.|.-
T Consensus        87 v~~sD~-G~Y~C~v~n~p  103 (116)
T cd05879          87 LDYTDN-GTFTCDVKNPP  103 (116)
T ss_pred             CCcccC-EEEEEEEEcCC
Confidence            999999 99999999975

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.86  E-value=2.1e-08  Score=70.56  Aligned_cols=82  Identities=17%  Similarity=0.297  Sum_probs=51.9

Q ss_pred             eCCcEEEEeeeCCccCC--------c-ceeEEEEeCC--Cee-eEEee------eecCCceEEEcc------CCeEEEee
Q psy12724         79 KGNSAVLKCHIPSFVAD--------Y-VAVESWISDQ--GEE-LFVDM------TESTDGKYLVLP------SGELHIRD  134 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~--------p-~p~i~W~k~~--~~~-l~~~~------~~~~~~r~~~~~------~g~L~I~~  134 (167)
                      .|++++|+|........        | .+.|.|+|..  ... +.-..      .+.-.+|+.+..      +..|.|+|
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            48999999998532111        1 4689999852  111 11111      011224676642      45899999


Q ss_pred             cCcCCCCcceEEEeeecC---cceEEEeee
Q psy12724        135 VGPEDGYKSYQCRTKHRL---TGETRLSAT  161 (167)
Q Consensus       135 v~~~D~~G~Y~C~a~n~~---~~~~~l~~~  161 (167)
                      ++.+|+ |.|.|...+..   +....|.+.
T Consensus        81 l~~sDs-G~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          81 LRSNDS-GTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             cccccC-EEEEEEEecCCCCceeEEEEEEE
Confidence            999999 99999999885   334444443

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.86  E-value=2.2e-08  Score=69.05  Aligned_cols=83  Identities=18%  Similarity=0.254  Sum_probs=51.3

Q ss_pred             eCCcEEEEeeeCCcc---CCcceeEEEEeCC-----CeeeEEee------eecCCceEEEc----cCCeEEEeecCcCCC
Q psy12724         79 KGNSAVLKCHIPSFV---ADYVAVESWISDQ-----GEELFVDM------TESTDGKYLVL----PSGELHIRDVGPEDG  140 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~---~~p~p~i~W~k~~-----~~~l~~~~------~~~~~~r~~~~----~~g~L~I~~v~~~D~  140 (167)
                      .|++|+|+|......   ....+.|.|+|..     ...++-..      .....+|....    .+..|.|++++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999986421   0125689999862     11121110      00111233321    245799999999999


Q ss_pred             CcceEEEeeecC---cceEEEeeeC
Q psy12724        141 YKSYQCRTKHRL---TGETRLSATK  162 (167)
Q Consensus       141 ~G~Y~C~a~n~~---~~~~~l~~~~  162 (167)
                       |.|.|.+.+..   ...+.|.+.+
T Consensus        81 -G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 -GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             -EEEEEEEEcCCCceEEEEEEEEEE
Confidence             99999999874   4455666543

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.85  E-value=2.4e-08  Score=65.73  Aligned_cols=62  Identities=23%  Similarity=0.339  Sum_probs=43.3

Q ss_pred             cEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC-------CeEEEeecCcCCCCcceEEEeeecC
Q psy12724         82 SAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS-------GELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        82 ~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~-------g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+.|.|.+.+  +.|.|.++|+|++ ..+...     .....+.++       ..|.|......|. |.|+|.|.|..
T Consensus         1 ~~~L~C~v~g--~~P~~~v~W~~~g-~~l~~~-----~~~~~~~~~~~~~~~~s~L~i~~~~~~~~-~~y~C~a~n~~   69 (82)
T cd05759           1 PYNLTCRARG--AKPAAEIIWFRDG-EVLDGA-----TYSKELLKDGKRETTVSTLPITPSDHDTG-RTFTCRARNEA   69 (82)
T ss_pred             CEEEEEEEeC--ccCCCEEEEEECC-EEccCc-----eeeeeEecCCCeEEEEEEEEEeCceecCC-CEEEEEEcCcc
Confidence            3689999986  2588899999987 555321     111112222       2588888888887 99999999976

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.84  E-value=1.3e-08  Score=80.00  Aligned_cols=75  Identities=17%  Similarity=0.131  Sum_probs=50.8

Q ss_pred             CeEEEeCCcEEEEeeeCCccC--------CcceeEEEEeCCCeeeEEeeeecC--------CceEEEccCCeEEEeecCc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVA--------DYVAVESWISDQGEELFVDMTEST--------DGKYLVLPSGELHIRDVGP  137 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~--------~p~p~i~W~k~~~~~l~~~~~~~~--------~~r~~~~~~g~L~I~~v~~  137 (167)
                      ...+.+|++|.|+|.+.++..        ...+.+.|+|++...+....  +.        ..++ ...++.|.|.+++.
T Consensus        31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~--~~~~~~~~i~~~~~-~~r~~~L~I~~v~~  107 (227)
T PHA02826         31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDS--GARTKIKKITHNEI-GDRSENLWIGNVIN  107 (227)
T ss_pred             eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcC--CCccccccccccce-ecCCCeEEECCCCh
Confidence            356789999999999864310        13458899998732111110  00        0111 12367999999999


Q ss_pred             CCCCcceEEEeeecC
Q psy12724        138 EDGYKSYQCRTKHRL  152 (167)
Q Consensus       138 ~D~~G~Y~C~a~n~~  152 (167)
                      +|+ |.|+|.|.|..
T Consensus       108 ~Ds-G~Y~C~a~N~~  121 (227)
T PHA02826        108 IDE-GIYICTISSGN  121 (227)
T ss_pred             HHC-EEEEEEEEECC
Confidence            999 99999999976

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.83  E-value=1.9e-08  Score=68.73  Aligned_cols=72  Identities=18%  Similarity=0.257  Sum_probs=50.0

Q ss_pred             EeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee----e------ecCCceEEEccC-CeEEEeecCcCCCCcceEE
Q psy12724         78 LKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM----T------ESTDGKYLVLPS-GELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        78 ~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~----~------~~~~~r~~~~~~-g~L~I~~v~~~D~~G~Y~C  146 (167)
                      ..|++|+|+|..+.  +.....+.|+|.....+....    .      +.-.+|+.+..+ ++|.|++++.+|+ |.|.|
T Consensus         2 ~~G~sVtL~c~~~~--~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~Ds-G~Y~c   78 (97)
T cd05775           2 ILGGSVTLPLNIPD--GTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDA-GSYRA   78 (97)
T ss_pred             ccCCeEEEeCCCCC--CcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHC-EEEEE
Confidence            47999999998863  135678899997522222110    0      011245666554 7899999999999 99999


Q ss_pred             EeeecC
Q psy12724        147 RTKHRL  152 (167)
Q Consensus       147 ~a~n~~  152 (167)
                      ...+..
T Consensus        79 ~v~~~~   84 (97)
T cd05775          79 EINTKN   84 (97)
T ss_pred             EEEcCC
Confidence            998765

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.83  E-value=1.8e-08  Score=69.65  Aligned_cols=75  Identities=15%  Similarity=0.240  Sum_probs=49.7

Q ss_pred             eEEEeCCcEEEEeee-CCcc-------CCcceeEEEEeCCCeeeEEee-eecCCceEEEccCCeEEEeecCcCCCCcceE
Q psy12724         75 EHVLKGNSAVLKCHI-PSFV-------ADYVAVESWISDQGEELFVDM-TESTDGKYLVLPSGELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~-~~~~-------~~p~p~i~W~k~~~~~l~~~~-~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~  145 (167)
                      ..+.+|+.+.|.|.. .++.       .++...++|+|++. .+.... .+..+.|. ...++.|.|.++..+|+ |.|+
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~-~~~~~~~~~~~~~Ri-~~~~~~Lwf~Pa~~eDS-G~Y~   86 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSG-DGEEPIEIIFDGVRM-SKEEDSIWFRPAELQDS-GLYT   86 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCC-CCCCCCcccccceeE-EEeCCEEEEEeCChhhC-eEEE
Confidence            467899999999986 1110       12333689999962 222110 00011233 34577899999999999 9999


Q ss_pred             EEeeecC
Q psy12724        146 CRTKHRL  152 (167)
Q Consensus       146 C~a~n~~  152 (167)
                      |++.|.-
T Consensus        87 C~~rN~t   93 (104)
T cd05896          87 CVLRNST   93 (104)
T ss_pred             EEECCCC
Confidence            9999986

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.82  E-value=3.6e-08  Score=67.93  Aligned_cols=82  Identities=21%  Similarity=0.319  Sum_probs=51.4

Q ss_pred             eCCcEEEEeeeCCcc---CCcceeEEEEeCCCe-----eeEEee------eecCCceEEEcc----CCeEEEeecCcCCC
Q psy12724         79 KGNSAVLKCHIPSFV---ADYVAVESWISDQGE-----ELFVDM------TESTDGKYLVLP----SGELHIRDVGPEDG  140 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~---~~p~p~i~W~k~~~~-----~l~~~~------~~~~~~r~~~~~----~g~L~I~~v~~~D~  140 (167)
                      .|++|+|+|..+...   +.....|.|+|.+..     .++-..      .+.-.+|+.+..    +..|.|++++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            489999999875320   123457899986411     111000      011135666542    34799999999999


Q ss_pred             CcceEEEeeecC---cceEEEeee
Q psy12724        141 YKSYQCRTKHRL---TGETRLSAT  161 (167)
Q Consensus       141 ~G~Y~C~a~n~~---~~~~~l~~~  161 (167)
                       |.|.|.+.+..   ...+.|.++
T Consensus        81 -G~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          81 -GRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             -EEEEEEEEecccceEEEEEEEEE
Confidence             99999999876   334455554

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.77  E-value=9.8e-09  Score=69.26  Aligned_cols=65  Identities=14%  Similarity=0.159  Sum_probs=47.1

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      ..|..|++|+|.|...    .+.....|+|++. ... .     .........+.|.|.+|+.+|+ |.|+|.+.|.
T Consensus        11 ~vV~~G~~VtL~C~~~----~~~~~f~l~k~g~-~~~-~-----~~~~~~~~~~~f~i~~v~~~~~-G~Y~C~~~~~   75 (91)
T cd05751          11 SVVPLGKPVTLRCQGP----YGAVEYRLYREGS-TFA-V-----KKPPEPQNKAKFFIPSMKREHA-GRYRCYYRSG   75 (91)
T ss_pred             CccCCCCcEEEEEecC----CCCCEEEEEECCC-Ccc-c-----cccCCCceeEEEEccCCChhHC-EEEEEEEECC
Confidence            4678999999999985    3666789999973 221 0     0000011245799999999999 9999999986

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.76  E-value=7.5e-08  Score=67.33  Aligned_cols=83  Identities=19%  Similarity=0.279  Sum_probs=52.0

Q ss_pred             eCCcEEEEeeeCCccCC-------cceeEEEEeCC-Cee--eEEee------eecCCceEEEc------cCCeEEEeecC
Q psy12724         79 KGNSAVLKCHIPSFVAD-------YVAVESWISDQ-GEE--LFVDM------TESTDGKYLVL------PSGELHIRDVG  136 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~-------p~p~i~W~k~~-~~~--l~~~~------~~~~~~r~~~~------~~g~L~I~~v~  136 (167)
                      .|++|+|+|..+.....       ....|.|+|.. +..  +.-..      .+.-.+|+.+.      .+..|.|+|++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            48999999998532111       13568999852 111  11100      11123576653      23479999999


Q ss_pred             cCCCCcceEEEeeecC---cceEEEeeeC
Q psy12724        137 PEDGYKSYQCRTKHRL---TGETRLSATK  162 (167)
Q Consensus       137 ~~D~~G~Y~C~a~n~~---~~~~~l~~~~  162 (167)
                      .+|+ |.|.|.+....   ..++.|.+.+
T Consensus        81 ~sD~-G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDS-GVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhC-EEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999 99999998764   3455666544

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.75  E-value=4e-08  Score=62.29  Aligned_cols=64  Identities=23%  Similarity=0.367  Sum_probs=43.5

Q ss_pred             EEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeee
Q psy12724         77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus        77 v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      +..+..+.|.|.+.+.  .|.+.++|+ +. .....     ...+.....++.|.|+++..+|. |.|+|+|+|
T Consensus        12 ~~~~~~~~l~C~~~~~--~~~~~~~W~-~~-~~~~~-----~~~~~~~~~~~~L~i~~v~~~~~-g~y~C~a~N   75 (75)
T PF13927_consen   12 VTSGGSVTLTCSAEGG--PPPPSISWY-DS-NPSFN-----SNSRGSSSSNSTLTISNVTRSDN-GTYTCIASN   75 (75)
T ss_dssp             EETTEEEEEEEEESSE--ESSEEEEEE-TE-EEEEE-----EEEEEEEEEEEEEEESSCCGGGT-EEEEEEEEE
T ss_pred             EeeceeEEEEEEEccc--cCCeEEEEE-ec-CCcee-----eeeeeccceeeEEEEccCCHHhC-cEEEEEEEC
Confidence            3333449999999864  228899999 21 11111     12223333467899999999998 999999998

...

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.75  E-value=6.2e-08  Score=65.58  Aligned_cols=70  Identities=21%  Similarity=0.399  Sum_probs=44.3

Q ss_pred             CcEEEEeeeCCccCCcceeEEEEeCCCe--e-e--EEee-----eecCCceEEEc----cCCeEEEeecCcCCCCcceEE
Q psy12724         81 NSAVLKCHIPSFVADYVAVESWISDQGE--E-L--FVDM-----TESTDGKYLVL----PSGELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        81 ~~a~l~C~~~~~~~~p~p~i~W~k~~~~--~-l--~~~~-----~~~~~~r~~~~----~~g~L~I~~v~~~D~~G~Y~C  146 (167)
                      ++|.|+|......+.....|.|+|....  . +  ....     .+...+|..+.    .+..|.|++++.+|+ |.|.|
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~-G~Y~C   79 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDE-GNYIC   79 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccC-EEEEE
Confidence            4799999986431123557999996531  1 1  1000     00113444443    246899999999999 99999


Q ss_pred             Eeeec
Q psy12724        147 RTKHR  151 (167)
Q Consensus       147 ~a~n~  151 (167)
                      .+.+.
T Consensus        80 ~v~~~   84 (98)
T cd05718          80 EFATF   84 (98)
T ss_pred             EEEeC
Confidence            98753

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.71  E-value=1.1e-07  Score=66.88  Aligned_cols=86  Identities=26%  Similarity=0.419  Sum_probs=52.0

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCC-cceeEEEEeC---CCee--eEEee---eecCC----ceEEEc-----cCCeEEEee
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVAD-YVAVESWISD---QGEE--LFVDM---TESTD----GKYLVL-----PSGELHIRD  134 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~-p~p~i~W~k~---~~~~--l~~~~---~~~~~----~r~~~~-----~~g~L~I~~  134 (167)
                      ....+.+|++|.|+|........ ....|.|++.   ++..  ++...   .....    +|+...     .+..|+|++
T Consensus         6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~   85 (115)
T cd05880           6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQ   85 (115)
T ss_pred             ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEee
Confidence            34578899999999987432111 1346899641   2221  21110   00011    333322     244799999


Q ss_pred             cCcCCCCcceEEEeeecC-----cceEEEe
Q psy12724        135 VGPEDGYKSYQCRTKHRL-----TGETRLS  159 (167)
Q Consensus       135 v~~~D~~G~Y~C~a~n~~-----~~~~~l~  159 (167)
                      ++.+|+ |.|.|.+.|..     .++++|.
T Consensus        86 v~~~D~-G~Y~C~v~~~~~~~~~~~~~~~~  114 (115)
T cd05880          86 LQPTDN-GTYTCQVKNPPDVHGPIGEIRLR  114 (115)
T ss_pred             CChhhC-EEEEEEEEeCCCCCCCccEEEEe
Confidence            999999 99999999865     3566654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.71  E-value=9.2e-08  Score=66.02  Aligned_cols=75  Identities=25%  Similarity=0.398  Sum_probs=49.6

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-e-e--eEEee---eecCCceEEEccCC---eEEEeecCcCCCCcc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-E-E--LFVDM---TESTDGKYLVLPSG---ELHIRDVGPEDGYKS  143 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~-~--l~~~~---~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~  143 (167)
                      ...+.+|++|.|.|.+.+..  ....+.|+|... . +  +....   .....+|+....++   .|.|++++.+|+ |.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~--~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds-g~   85 (106)
T cd04980           9 TLSVSPGESATISCKASQSV--SSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA-AV   85 (106)
T ss_pred             cEEECCCCCEEEEEEECCCC--CCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC-EE
Confidence            45778999999999986431  145689997531 1 1  11100   00112467654333   599999999999 99


Q ss_pred             eEEEeeec
Q psy12724        144 YQCRTKHR  151 (167)
Q Consensus       144 Y~C~a~n~  151 (167)
                      |.|.+.+.
T Consensus        86 Y~Ca~~~~   93 (106)
T cd04980          86 YYCQQYGT   93 (106)
T ss_pred             EEEEEeCC
Confidence            99999764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.69  E-value=3.9e-07  Score=64.01  Aligned_cols=78  Identities=18%  Similarity=0.270  Sum_probs=48.2

Q ss_pred             CeEEEeCCcEEEEeeeCCccC-CcceeEEEEeCCC-----eeeEEee---e-ecCC----ceEEEcc-----CCeEEEee
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVA-DYVAVESWISDQG-----EELFVDM---T-ESTD----GKYLVLP-----SGELHIRD  134 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~-~p~p~i~W~k~~~-----~~l~~~~---~-~~~~----~r~~~~~-----~g~L~I~~  134 (167)
                      ...+.+|++|+|+|..+.... .....+.|++...     ..+....   . ....    +|+.+..     +..|.|++
T Consensus         7 ~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   86 (116)
T cd05715           7 EVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHN   86 (116)
T ss_pred             eEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEee
Confidence            457789999999998853211 1235689976321     1121110   0 0012    3333322     24699999


Q ss_pred             cCcCCCCcceEEEeeecC
Q psy12724        135 VGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       135 v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++.+|+ |.|.|.+.|.-
T Consensus        87 v~~~D~-G~Y~C~v~~~~  103 (116)
T cd05715          87 LQFTDN-GTYTCDVKNPP  103 (116)
T ss_pred             CCcccC-EEEEEEEEeCC
Confidence            999999 99999999864

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.67  E-value=1.7e-07  Score=65.57  Aligned_cols=75  Identities=16%  Similarity=0.271  Sum_probs=50.2

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC--Cee--eEEeee--------ecCCceEEEccC-----CeEEEeecCc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ--GEE--LFVDMT--------ESTDGKYLVLPS-----GELHIRDVGP  137 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~--~~~--l~~~~~--------~~~~~r~~~~~~-----g~L~I~~v~~  137 (167)
                      ..+.+|++|.|.|.+.+. ..+.+.+.|+|..  ..+  +.....        +...+|+.+..+     -.|.|.+++.
T Consensus         8 ~~~~~G~~v~l~C~~~~~-~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~   86 (116)
T cd04982           8 ITREESKSVTISCKVSGI-DFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK   86 (116)
T ss_pred             EEeCCCCCEEEEEEEeCC-CccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence            466789999999998642 1366789999852  111  111000        012467766533     2699999999


Q ss_pred             CCCCcceEEEeeec
Q psy12724        138 EDGYKSYQCRTKHR  151 (167)
Q Consensus       138 ~D~~G~Y~C~a~n~  151 (167)
                      +|+ |.|.|.+...
T Consensus        87 ~Ds-g~Y~C~~~~~   99 (116)
T cd04982          87 EDS-ATYYCAYWES   99 (116)
T ss_pred             HHC-EEEEEEEecC
Confidence            999 9999999754

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.63  E-value=2.8e-07  Score=62.73  Aligned_cols=78  Identities=22%  Similarity=0.311  Sum_probs=48.5

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCe---eeEEee-------eecCCceEEEc----cCCeEEEeecCcCCCCcceE
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGE---ELFVDM-------TESTDGKYLVL----PSGELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~---~l~~~~-------~~~~~~r~~~~----~~g~L~I~~v~~~D~~G~Y~  145 (167)
                      |++|+|+|....  ....-.+.|+|..+.   .+....       .+.-.+|+.+.    .+..|.|+|++.+|+ |.|.
T Consensus         1 G~~vtL~C~~~~--~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~-G~Y~   77 (97)
T cd05846           1 GGNVTLSCNLTL--PEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDE-GCYK   77 (97)
T ss_pred             CCcEEEEEEeCC--CCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeee-EEEE
Confidence            789999998753  122236899985421   111110       00112344442    244799999999999 9999


Q ss_pred             EEeeecC----cceEEEee
Q psy12724        146 CRTKHRL----TGETRLSA  160 (167)
Q Consensus       146 C~a~n~~----~~~~~l~~  160 (167)
                      |...+.-    ++.+.|++
T Consensus        78 C~~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          78 CIFNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EEEEeCCCCCeeeEEEEEE
Confidence            9987644    55666654

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.62  E-value=2.1e-07  Score=63.34  Aligned_cols=74  Identities=19%  Similarity=0.274  Sum_probs=48.7

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCCC--ee--eEEeee---ecCCceEEEccCC---eEEEeecCcCCCCcceE
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQG--EE--LFVDMT---ESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~--~~--l~~~~~---~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~  145 (167)
                      .|.+|++|.|.|...+.. .....+.|+|...  .+  +.....   +...+|+.+..++   .|.|++++.+|+ |.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~-~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Ds-g~Y~   79 (98)
T cd04984           2 SVSPGETVTITCTGSSGN-ISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDE-ADYY   79 (98)
T ss_pred             ccCCCCCEEEEEEEcCCC-cCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhC-EEEE
Confidence            467899999999986421 1345689987542  11  111110   0113477765443   599999999999 9999


Q ss_pred             EEeeec
Q psy12724        146 CRTKHR  151 (167)
Q Consensus       146 C~a~n~  151 (167)
                      |.+.+.
T Consensus        80 C~~~~~   85 (98)
T cd04984          80 CQVWDS   85 (98)
T ss_pred             EEEccC
Confidence            998764

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.61  E-value=5.9e-08  Score=64.28  Aligned_cols=60  Identities=8%  Similarity=0.109  Sum_probs=42.4

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee--cCCceE-------EEeeeEEEecCe
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI--DNQDFV-------VSQSYTVNIMDE   75 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~--~~~~~v-------~~g~y~c~~~~~   75 (167)
                      |..+|+++.|.+|+++.|.|.|.|.|.+  ..|+|.|++. .+..  +.....       ..|.|+|.+.|.
T Consensus         1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P--~~I~W~k~g~-~l~~~~~~~~s~L~i~~~~d~g~Y~C~A~N~   69 (81)
T cd05749           1 FTVEPEDLSVTANTPFNLTCQAVGPPEP--VEILWWQGGS-PLGDPPAPSPSVLNVPGLNETSKFSCEAHNA   69 (81)
T ss_pred             CcCCCCceEEcCCCCEEEEEEeeeecCC--eEEEEEECCE-ECCCCCCCCCCEEEEccccCCeEEEEEEEec
Confidence            5678999999999999999999998853  1599999954 3422  111111       156777777664

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.60  E-value=4.1e-07  Score=62.26  Aligned_cols=76  Identities=20%  Similarity=0.319  Sum_probs=48.9

Q ss_pred             CcEEEEeeeCCccCCcceeEEEEeCCC---eeeEEeee--------ecCCceEEEc----cCCeEEEeecCcCCCCcceE
Q psy12724         81 NSAVLKCHIPSFVADYVAVESWISDQG---EELFVDMT--------ESTDGKYLVL----PSGELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        81 ~~a~l~C~~~~~~~~p~p~i~W~k~~~---~~l~~~~~--------~~~~~r~~~~----~~g~L~I~~v~~~D~~G~Y~  145 (167)
                      .+|+|+|....  ......++|.|...   ..+. .+.        +.-.+|..+.    .+++|.|+|++.+|+ |.|+
T Consensus         1 ~~vtL~C~~~~--~~~~~qV~W~k~~~~~~~~ia-~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~-G~Y~   76 (96)
T cd05887           1 KNVTLKCRIQV--NETITQSSWEKIHGKGSVTLA-VHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDI-GVYI   76 (96)
T ss_pred             CCEEEEEEecC--CCcEEEEEEEEcCCCCcEEEE-EEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCcccc-EEEE
Confidence            36899999863  23566899988532   1221 110        0112455542    367899999999999 9999


Q ss_pred             EEeeecC----cceEEEee
Q psy12724        146 CRTKHRL----TGETRLSA  160 (167)
Q Consensus       146 C~a~n~~----~~~~~l~~  160 (167)
                      |...+.-    .+.+.|++
T Consensus        77 C~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          77 CKAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             EEEEeCCCCCeeEEEEEEE
Confidence            9987754    44555544

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=98.57  E-value=3.3e-07  Score=61.34  Aligned_cols=61  Identities=11%  Similarity=0.188  Sum_probs=45.2

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec------CCc-eE------EEeeeEEEecCe
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID------NQD-FV------VSQSYTVNIMDE   75 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~------~~~-~v------~~g~y~c~~~~~   75 (167)
                      +.|.+.+.+..+.+|+++.|.|.+.|.|.+   .++|+|++.. +...      +.. .+      ..|.|+|.+.|.
T Consensus         2 p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P---~v~W~k~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~   75 (88)
T cd05851           2 ADINVKFKDTYALKGQNVTLECFALGNPVP---VIRWRKILEP-MPATAEISMSGAVLKIFNIQPEDEGTYECEAENI   75 (88)
T ss_pred             CceEEccccEEEeCCCcEEEEEEecccCCC---EEEEEECCcC-CCCCCEEecCCCEEEECcCChhhCEEEEEEEEcC
Confidence            467889999999999999999999998864   7999998542 3211      111 11      268888888764

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.57  E-value=7.8e-07  Score=61.00  Aligned_cols=71  Identities=20%  Similarity=0.351  Sum_probs=43.8

Q ss_pred             CcEEEEeeeCCccCCcceeEEEEeCCCe----eeEE-ee------eecCCceEEEc-----cCCeEEEeecCcCCCCcce
Q psy12724         81 NSAVLKCHIPSFVADYVAVESWISDQGE----ELFV-DM------TESTDGKYLVL-----PSGELHIRDVGPEDGYKSY  144 (167)
Q Consensus        81 ~~a~l~C~~~~~~~~p~p~i~W~k~~~~----~l~~-~~------~~~~~~r~~~~-----~~g~L~I~~v~~~D~~G~Y  144 (167)
                      .+|+|+|......+.....+.|+|....    .+.- ..      .++-.+|..+.     .++.|.|+|++.+|+ |.|
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~-GtY   79 (100)
T cd05888           1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADE-GKY   79 (100)
T ss_pred             CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccc-eEE
Confidence            4799999985321222458899984311    1110 00      01111343333     256899999999999 999


Q ss_pred             EEEeeecC
Q psy12724        145 QCRTKHRL  152 (167)
Q Consensus       145 ~C~a~n~~  152 (167)
                      .|.+.+.-
T Consensus        80 ~C~v~~~p   87 (100)
T cd05888          80 KCRVITFP   87 (100)
T ss_pred             EEEEEeCC
Confidence            99998843

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.56  E-value=3.7e-07  Score=62.43  Aligned_cols=75  Identities=21%  Similarity=0.391  Sum_probs=50.6

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCe----eeEEee--------eecCCceEEEccCC-----eEEEeecC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGE----ELFVDM--------TESTDGKYLVLPSG-----ELHIRDVG  136 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~----~l~~~~--------~~~~~~r~~~~~~g-----~L~I~~v~  136 (167)
                      ...+.+|++|.|+|... . ......+.|++....    .+....        .+...+|+.+..++     .|.|.|++
T Consensus        10 ~v~~~~G~~v~L~C~~~-~-~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~   87 (114)
T PF07686_consen   10 PVTVQEGESVTLPCSYS-S-SSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ   87 (114)
T ss_dssp             EEEEETTSEEEEEEEEE-S-SSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred             eEEEecCCCEEEEEEEe-C-CCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence            35678999999999987 2 235668899985421    122000        01123455544433     59999999


Q ss_pred             cCCCCcceEEEeeec
Q psy12724        137 PEDGYKSYQCRTKHR  151 (167)
Q Consensus       137 ~~D~~G~Y~C~a~n~  151 (167)
                      .+|+ |.|.|.....
T Consensus        88 ~~Ds-G~Y~C~v~~~  101 (114)
T PF07686_consen   88 PSDS-GTYFCQVSTS  101 (114)
T ss_dssp             GGGE-EEEEEEEEES
T ss_pred             cCcC-EEEEEEEEEC
Confidence            9999 9999999886

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.55  E-value=3.9e-07  Score=63.87  Aligned_cols=82  Identities=15%  Similarity=0.248  Sum_probs=51.2

Q ss_pred             eCCcEEEEeeeCCcc----CCcceeEEEEeCC----Cee--eEE------eeeecCCceEEEcc------CCeEEEeecC
Q psy12724         79 KGNSAVLKCHIPSFV----ADYVAVESWISDQ----GEE--LFV------DMTESTDGKYLVLP------SGELHIRDVG  136 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~----~~p~p~i~W~k~~----~~~--l~~------~~~~~~~~r~~~~~------~g~L~I~~v~  136 (167)
                      .|++|+|+|...-..    ....+.|.|.|..    ...  ++-      ...+.-.+|..+..      +.+|.|+|++
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~   80 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR   80 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence            488999999953110    1124789999851    111  110      01122346766643      3479999999


Q ss_pred             cCCCCcceEEEeeecC---cceEEEeee
Q psy12724        137 PEDGYKSYQCRTKHRL---TGETRLSAT  161 (167)
Q Consensus       137 ~~D~~G~Y~C~a~n~~---~~~~~l~~~  161 (167)
                      .+|+ |.|.|......   .....|.+.
T Consensus        81 ~~D~-G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          81 YSDS-GTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             HHHC-EEEEEEEEECCcccEEEEEEEEE
Confidence            9999 99999999865   334455554

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.52  E-value=2.7e-07  Score=63.02  Aligned_cols=60  Identities=17%  Similarity=0.302  Sum_probs=43.1

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc----------e-E--------EEeeeEEEecC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD----------F-V--------VSQSYTVNIMD   74 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~----------~-v--------~~g~y~c~~~~   74 (167)
                      ...|.+..+..|+++.|.|.+.+.|.+  |.+.|++.+++.+..+..+          . +        .+|.|+|.+.|
T Consensus         4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~--p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N   81 (96)
T cd05865           4 DIVPSQGEISVGESKFFLCQVAGEAKD--KDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSN   81 (96)
T ss_pred             EEeCCccEECCCCeEEEEEEEeCCCCC--CEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEc
Confidence            457788899999999999999998753  4899998656544332111          0 1        26888888876


Q ss_pred             e
Q psy12724         75 E   75 (167)
Q Consensus        75 ~   75 (167)
                      .
T Consensus        82 ~   82 (96)
T cd05865          82 E   82 (96)
T ss_pred             C
Confidence            4

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.51  E-value=1e-06  Score=60.56  Aligned_cols=79  Identities=13%  Similarity=0.239  Sum_probs=47.7

Q ss_pred             CcEEEEeeeCCcc-CCcceeEEEEeCC--Ce-ee--EEe-----eeecCCceEEEcc----CCeEEEeecCcCCCCcceE
Q psy12724         81 NSAVLKCHIPSFV-ADYVAVESWISDQ--GE-EL--FVD-----MTESTDGKYLVLP----SGELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        81 ~~a~l~C~~~~~~-~~p~p~i~W~k~~--~~-~l--~~~-----~~~~~~~r~~~~~----~g~L~I~~v~~~D~~G~Y~  145 (167)
                      .+|.|+|...... ....-.++|.|..  .. .+  +..     ..+.-.+|.....    +++|.|+|++.+|+ |.|+
T Consensus         1 ~~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~-G~Y~   79 (99)
T cd05886           1 TDVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDE-GVYI   79 (99)
T ss_pred             CcEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccC-EEEE
Confidence            3689999986310 1112268998842  11 22  110     0011235555442    47899999999999 9999


Q ss_pred             EEeeecC----cceEEEee
Q psy12724        146 CRTKHRL----TGETRLSA  160 (167)
Q Consensus       146 C~a~n~~----~~~~~l~~  160 (167)
                      |...|.-    .+.+.|+|
T Consensus        80 C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          80 CEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             EEEEeCCCCCeEEEEEEEE
Confidence            9999943    44555554

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=98.47  E-value=5.1e-07  Score=61.73  Aligned_cols=62  Identities=15%  Similarity=0.164  Sum_probs=46.3

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--------ce-E--------EEeeeEEEec
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--------DF-V--------VSQSYTVNIM   73 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--------~~-v--------~~g~y~c~~~   73 (167)
                      +.|...+++..+..|+++.|.|.+.|.|.+   .+.|+|++. .+..+..        .. +        .+|.|+|.+.
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p---~v~W~kdg~-~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~   76 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPI---TCTWMKFRK-QIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVE   76 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCC---ceEEEECCE-EecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEE
Confidence            357788999999999999999999988764   799999853 4432211        11 1        2799999997


Q ss_pred             CeE
Q psy12724         74 DEH   76 (167)
Q Consensus        74 ~~~   76 (167)
                      |..
T Consensus        77 N~~   79 (98)
T cd05762          77 NKL   79 (98)
T ss_pred             cCC
Confidence            753

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.47  E-value=1.3e-06  Score=59.20  Aligned_cols=74  Identities=16%  Similarity=0.268  Sum_probs=49.8

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCee---eEEee---eecCCceEEEcc---CC--eEEEeecCcCCCCcce
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEE---LFVDM---TESTDGKYLVLP---SG--ELHIRDVGPEDGYKSY  144 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~---l~~~~---~~~~~~r~~~~~---~g--~L~I~~v~~~D~~G~Y  144 (167)
                      .+.+|++|.|+|.....  .....+.|+|.....   +.-..   .+...+|+.+..   ++  .|.|++++.+|+ |.|
T Consensus         3 ~~~~G~~vtl~C~~~~~--~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y   79 (98)
T cd05716           3 TGELGGSVTIPCPYPPK--NRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDA-GWY   79 (98)
T ss_pred             EEEeCCeEEEEeeCCCC--CCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHC-EEE
Confidence            57799999999998642  245567999864211   11000   011245676542   23  699999999999 999


Q ss_pred             EEEeeecC
Q psy12724        145 QCRTKHRL  152 (167)
Q Consensus       145 ~C~a~n~~  152 (167)
                      .|.+.+..
T Consensus        80 ~C~~~~~~   87 (98)
T cd05716          80 WCGVGDDG   87 (98)
T ss_pred             EEEcccCC
Confidence            99998765

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.47  E-value=1.2e-06  Score=60.41  Aligned_cols=69  Identities=17%  Similarity=0.193  Sum_probs=50.9

Q ss_pred             eEEEeCCcEEEEeeeCCccCCccee-EEEEeCCCeeeEEeeeecCCceEEEcc------CCeEEEeecCcCCCCcceEEE
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAV-ESWISDQGEELFVDMTESTDGKYLVLP------SGELHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~-i~W~k~~~~~l~~~~~~~~~~r~~~~~------~g~L~I~~v~~~D~~G~Y~C~  147 (167)
                      +.|.+|+++.|.|.+.++   |+|. +.|.+++ ..+...    ....+....      ...|.+..++.+|+ |.|+|.
T Consensus        13 ~~v~~gE~~~L~V~ieAY---P~p~~~~W~~~~-~~l~~~----~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~-G~YTf~   83 (101)
T cd05860          13 IFVNAGENLDLIVEYEAY---PKPEHQQWIYMN-RTLTNT----SDHYVKSRNESNNRYVSELHLTRLKGTEG-GTYTFL   83 (101)
T ss_pred             EEEECCCCEEEEEEEEeC---CCCeeeEEEcCC-cccCcc----ccceeEEeccCceEEEEEEEEeecChhhC-cEEEEE
Confidence            467899999999999987   8887 8999986 333211    111111111      13699999999999 999999


Q ss_pred             eeecC
Q psy12724        148 TKHRL  152 (167)
Q Consensus       148 a~n~~  152 (167)
                      |.|..
T Consensus        84 a~N~~   88 (101)
T cd05860          84 VSNSD   88 (101)
T ss_pred             EECCC
Confidence            99987

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.45  E-value=9.5e-07  Score=59.30  Aligned_cols=39  Identities=18%  Similarity=0.366  Sum_probs=33.9

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +.|...+.+..+.+|+++.|.|.+.+.|.+   .+.|+|++.
T Consensus         2 P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p---~i~W~k~g~   40 (100)
T cd07693           2 PRIVEHPSDLIVSKGDPATLNCKAEGRPTP---TIQWLKNGQ   40 (100)
T ss_pred             CeEEecCceeEEcCCCeEEEEeeCCcCCCC---EEEEEECCE
Confidence            457788999999999999999999998764   799999853

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.42  E-value=2.4e-06  Score=59.77  Aligned_cols=76  Identities=24%  Similarity=0.280  Sum_probs=50.2

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-ee---eEEe---eeecCCceEEEcc---CC--eEEEeecCcCCC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-EE---LFVD---MTESTDGKYLVLP---SG--ELHIRDVGPEDG  140 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~~---l~~~---~~~~~~~r~~~~~---~g--~L~I~~v~~~D~  140 (167)
                      ....+.+|++|.|+|.....  .....+.|+|... ..   +...   ..+...+|+.+..   ++  .|.|.+++.+|+
T Consensus         7 ~~v~~~~G~~v~L~C~~~~~--~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds   84 (116)
T cd07706           7 PDVSVQVGEEVTLNCRYETS--WTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDS   84 (116)
T ss_pred             CceEEcCCCCEEEEEEEeCC--CCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHC
Confidence            34567899999999998632  1345789998421 11   1110   0011246787642   22  699999999999


Q ss_pred             CcceEEEeeec
Q psy12724        141 YKSYQCRTKHR  151 (167)
Q Consensus       141 ~G~Y~C~a~n~  151 (167)
                       |.|.|.+.+.
T Consensus        85 -g~Y~C~~~~~   94 (116)
T cd07706          85 -AKYFCALSTL   94 (116)
T ss_pred             -EEEEEEEECC
Confidence             9999999853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.42  E-value=2.8e-06  Score=59.95  Aligned_cols=78  Identities=22%  Similarity=0.290  Sum_probs=48.7

Q ss_pred             cCeEEEeCCcEEEEeeeCCcc--CC-cceeEEEEeCCCe----e-eEEee-----eecCCceEEEcc---C--CeEEEee
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFV--AD-YVAVESWISDQGE----E-LFVDM-----TESTDGKYLVLP---S--GELHIRD  134 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~--~~-p~p~i~W~k~~~~----~-l~~~~-----~~~~~~r~~~~~---~--g~L~I~~  134 (167)
                      +...+.+|++|+|+|..+...  .. ....+.|+|....    . +.-..     .+.-.+|+....   .  ..|+|++
T Consensus         7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~   86 (119)
T cd05712           7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISD   86 (119)
T ss_pred             CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEcc
Confidence            345788999999999764210  01 1245899986421    1 11000     011235776632   2  2699999


Q ss_pred             cCcCCCCcceEEEeeec
Q psy12724        135 VGPEDGYKSYQCRTKHR  151 (167)
Q Consensus       135 v~~~D~~G~Y~C~a~n~  151 (167)
                      ++.+|+ |.|.|.....
T Consensus        87 l~~~Ds-g~Y~C~~~~~  102 (119)
T cd05712          87 AQPEDS-GKYFFRVELG  102 (119)
T ss_pred             CChhhC-eEEEEEEEcC
Confidence            999999 9999988654

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.41  E-value=3.2e-06  Score=59.81  Aligned_cols=82  Identities=18%  Similarity=0.323  Sum_probs=50.5

Q ss_pred             eCCcEEEEeeeCCccC--------CcceeEEEEeCC---------CeeeEEee------eecCCceEEEc------cCCe
Q psy12724         79 KGNSAVLKCHIPSFVA--------DYVAVESWISDQ---------GEELFVDM------TESTDGKYLVL------PSGE  129 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~--------~p~p~i~W~k~~---------~~~l~~~~------~~~~~~r~~~~------~~g~  129 (167)
                      .|++|+|+|...-...        .....|.|.|-.         ...++-..      .+.-.+|..+.      .+.+
T Consensus         1 ~~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~as   80 (117)
T cd05901           1 LSGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDAS   80 (117)
T ss_pred             CCCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceE
Confidence            3789999999752211        123489998731         01121110      01223565553      2458


Q ss_pred             EEEeecCcCCCCcceEEEeeecC---cceEEEeee
Q psy12724        130 LHIRDVGPEDGYKSYQCRTKHRL---TGETRLSAT  161 (167)
Q Consensus       130 L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~~  161 (167)
                      |.|++++.+|+ |.|.|...+..   ...+.|.+.
T Consensus        81 L~i~~v~~sD~-G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          81 LTIVKLRASDA-GVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             EEEcccccccC-EEEEEEEEECCcccEEEEEEEEE
Confidence            99999999999 99999999876   344455554

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.40  E-value=7.4e-07  Score=60.19  Aligned_cols=38  Identities=13%  Similarity=0.446  Sum_probs=33.4

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +|..+|++..+.+|+++.|.|.+.+.|.   |.+.|+|++.
T Consensus         1 ~f~~~P~~~~~~~g~~v~l~C~v~g~P~---p~i~W~k~g~   38 (95)
T cd05722           1 WFLSEPSDIVAVRGGPVVLNCSAEGEPP---PKIEWKKDGV   38 (95)
T ss_pred             CcEECCCCeEEcCCCCEEEeeecccCCC---CEEEEEECCe
Confidence            4788999999999999999999999874   5899999753

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.38  E-value=2.2e-06  Score=56.21  Aligned_cols=59  Identities=10%  Similarity=0.171  Sum_probs=41.6

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCce------EEEeeeEEEecCe
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDF------VVSQSYTVNIMDE   75 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~------v~~g~y~c~~~~~   75 (167)
                      +..|+...+.+|+++.|.|.+.+.+.+  +.+.|+|++. .+..++...      -.+|.|+|.+.+.
T Consensus         4 ~~~P~~~~v~~G~~V~L~C~~~~~p~~--~~~~W~kng~-~l~~~~~~l~i~~~~~dsG~Y~C~a~~~   68 (78)
T cd05752           4 SLDPPWTTIFQGEKVTLTCNGFNSPEQ--NSTQWYHNGK-LLETTTNSYRIRAANNDSGEYRCQTQGS   68 (78)
T ss_pred             EeCCCCeEeeCCCCEEEEEeCCCCCCC--ccEEEEECCE-EeeccCCeEEEeecccCCEEeEEECCCC
Confidence            467888999999999999999987643  3589999853 442222211      1268888887653

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.37  E-value=1.4e-06  Score=57.71  Aligned_cols=43  Identities=19%  Similarity=0.408  Sum_probs=35.8

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI   57 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~   57 (167)
                      |.|...+.+..+.+|+++.|.|.+.+.|.   +.+.|.++ +..+..
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~---~~v~W~~~-~~~l~~   43 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPP---PTVTWYKN-GRPLTS   43 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSS---SEEEEEET-TEEEES
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCC---Cccccccc-ccceee
Confidence            46888899999999999999999998864   48999999 445543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.37  E-value=8.1e-07  Score=58.91  Aligned_cols=59  Identities=12%  Similarity=0.164  Sum_probs=43.6

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC-------ceE------EEeeeEEEecCe
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ-------DFV------VSQSYTVNIMDE   75 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~-------~~v------~~g~y~c~~~~~   75 (167)
                      |...|.++.+..|+++.|.|.+.+.|.   |.+.|+|++. .+.....       ..+      ..|.|+|.+.|.
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~---p~v~W~k~g~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   73 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPR---PAYRWLKNGQ-PLASENRIEVEAGDLRITKLSLSDSGMYQCVAENK   73 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCC---CEEEEEECCE-ECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECC
Confidence            667899999999999999999999885   4799999854 3322111       111      268888888764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=98.37  E-value=1.3e-06  Score=59.17  Aligned_cols=59  Identities=14%  Similarity=0.236  Sum_probs=43.1

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec--------CCce-E--------EEeeeEEEecCe
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID--------NQDF-V--------VSQSYTVNIMDE   75 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~--------~~~~-v--------~~g~y~c~~~~~   75 (167)
                      ....+.+..+.+|+++.|.|.+.|.|.    .+.|+++++..+...        +... +        .+|.|+|.+.|.
T Consensus         3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~----~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~   78 (92)
T cd05866           3 VSISLSKVELSVGESKFFTCTAIGEPE----SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA   78 (92)
T ss_pred             EEEEecceEEcCCCeEEEEEEEEEeCC----eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcC
Confidence            457888999999999999999998774    489999777555321        1111 1        268888888764

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>PHA03376 BARF1; Provisional

Probab=98.36  E-value=4.5e-06  Score=63.44  Aligned_cols=82  Identities=13%  Similarity=0.095  Sum_probs=54.9

Q ss_pred             EEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeC----CCeeeE--------EeeeecCCceEEEcc-CC--eEEEee
Q psy12724         70 VNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISD----QGEELF--------VDMTESTDGKYLVLP-SG--ELHIRD  134 (167)
Q Consensus        70 c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~----~~~~l~--------~~~~~~~~~r~~~~~-~g--~L~I~~  134 (167)
                      |......+..|++|.|+|.-....-.+.-.|.|+|+    +...+.        +.+  ...+++.+.. +|  +|.|.+
T Consensus        16 ~sg~pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~Qm--EyRGrtD~~~~~gnvsLvI~~   93 (221)
T PHA03376         16 AAGQAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEW--PFRGFFDIHRSANTFFLVVTA   93 (221)
T ss_pred             ccCcchhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeee--ccccEEEEEecCCeEEEEEEe
Confidence            444445778999999999875322335668899994    211121        111  2345666643 23  699999


Q ss_pred             cCcCCCCcceEEEeeecCcc
Q psy12724        135 VGPEDGYKSYQCRTKHRLTG  154 (167)
Q Consensus       135 v~~~D~~G~Y~C~a~n~~~~  154 (167)
                      ++.+|. |.|+|...-...+
T Consensus        94 l~lSDd-GtY~C~fQkge~~  112 (221)
T PHA03376         94 ANISHD-GNYLCRMKLGETE  112 (221)
T ss_pred             eeecCC-ceEEEEEEcCCCc
Confidence            999998 9999999876543

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=98.33  E-value=1.3e-06  Score=58.71  Aligned_cols=40  Identities=18%  Similarity=0.329  Sum_probs=34.5

Q ss_pred             eeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         10 SQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        10 ~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      .++|...|.+..+.+|+++.|.|.+.+.|.+   .+.|+|++.
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p---~v~W~k~g~   42 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAP---TVTWMREGQ   42 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCC---EEEEEECCE
Confidence            3567788999999999999999999998864   799999853

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.33  E-value=1.1e-06  Score=59.48  Aligned_cols=39  Identities=8%  Similarity=0.200  Sum_probs=31.9

Q ss_pred             eceeeEEeEEEEE---eCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         11 QYYEAQVYDVFVI---KGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        11 ~~~~~~~~~~~v~---~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +.|..+|.++.+.   +|+++.|.|.|.+.|.+   .++|+|++.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P---~i~W~k~g~   43 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVP---TYRWLRNGT   43 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCC---EEEEEECCe
Confidence            4677888887765   47899999999998864   899999854

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.32  E-value=3.9e-06  Score=58.09  Aligned_cols=73  Identities=25%  Similarity=0.362  Sum_probs=46.1

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCe----e---eEEee-e-------ecCCceEEE--ccCC---eEEEeec
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGE----E---LFVDM-T-------ESTDGKYLV--LPSG---ELHIRDV  135 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~----~---l~~~~-~-------~~~~~r~~~--~~~g---~L~I~~v  135 (167)
                      .|.+|++|.|.|.+...  .....+.|+|....    .   +.... .       +...+|+.+  ..++   .|.|.++
T Consensus         2 ~v~~G~~vtL~C~~~~~--~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   79 (107)
T cd07700           2 LVQTNNTVKLSCEAKGI--SENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRV   79 (107)
T ss_pred             EEcCCCCEEEEEEEecC--CCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCC
Confidence            46789999999998642  12346899985421    1   00000 0       001346654  2222   5999999


Q ss_pred             CcCCCCcceEEEeeec
Q psy12724        136 GPEDGYKSYQCRTKHR  151 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n~  151 (167)
                      +.+|+ |.|.|...+.
T Consensus        80 ~~~Ds-g~YyCa~~~~   94 (107)
T cd07700          80 KPEDS-GTYFCMTVGS   94 (107)
T ss_pred             CHHHC-EEEEEeEcCC
Confidence            99999 9999998643

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.31  E-value=1.7e-06  Score=58.36  Aligned_cols=40  Identities=15%  Similarity=0.266  Sum_probs=32.6

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI   57 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~   57 (167)
                      .+.|.+..+..|+++.|.|.+.+.|.    .+.|++.+++.+..
T Consensus         4 ~v~p~~~~v~~G~~~~l~C~~~G~p~----~i~W~~~~~~~~~~   43 (92)
T cd04977           4 DIVPSQGEISVGESKFFLCQVIGEPK----DISWFSPNGEKLVT   43 (92)
T ss_pred             EEecCcEEECCCCeEEEEEEeEeeCC----eEEEECCCCCEecc
Confidence            56788899999999999999998852    69999876665543

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.30  E-value=4.4e-06  Score=57.13  Aligned_cols=69  Identities=20%  Similarity=0.386  Sum_probs=45.6

Q ss_pred             CcEEEEeeeCCccCCcceeEEEEeCCC---eee--EEe-----eeecCCceEEEc----cCCeEEEeecCcCCCCcceEE
Q psy12724         81 NSAVLKCHIPSFVADYVAVESWISDQG---EEL--FVD-----MTESTDGKYLVL----PSGELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        81 ~~a~l~C~~~~~~~~p~p~i~W~k~~~---~~l--~~~-----~~~~~~~r~~~~----~~g~L~I~~v~~~D~~G~Y~C  146 (167)
                      +++.|+|..+.  ......++|.|...   ..+  ...     +.+.-.+|....    .++.|.|+|++.+|+ |.|+|
T Consensus         1 ~~vtL~C~~~~--~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~-G~Y~C   77 (96)
T cd05889           1 EKMKLECVYPK--TGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDV-GLYCC   77 (96)
T ss_pred             CCEEEEeEcCC--CCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccC-EEEEE
Confidence            46899999864  23577889998532   122  110     001112455544    357899999999999 99999


Q ss_pred             EeeecC
Q psy12724        147 RTKHRL  152 (167)
Q Consensus       147 ~a~n~~  152 (167)
                      ...+--
T Consensus        78 ~~~t~P   83 (96)
T cd05889          78 SLVTYP   83 (96)
T ss_pred             EEEeCC
Confidence            998754

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.30  E-value=1.6e-06  Score=57.60  Aligned_cols=60  Identities=13%  Similarity=0.166  Sum_probs=42.8

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec------CCce------EEEeeeEEEecCe
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID------NQDF------VVSQSYTVNIMDE   75 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~------~~~~------v~~g~y~c~~~~~   75 (167)
                      +...|.+..+.+|+++.|.|.+.+.|.+   .++|.|+++......      +...      -.+|.|+|.+.|.
T Consensus         4 ~~~~p~~~~~~~g~~v~l~C~~~g~P~p---~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   75 (88)
T cd04968           4 IVVFPKDTYALKGQNVTLECFALGNPVP---QIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENI   75 (88)
T ss_pred             EEECCCceEEeCCCcEEEEEEeeEeCCC---EEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEEC
Confidence            4567888999999999999999988754   799999876432211      1111      1368888888664

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.29  E-value=1.5e-06  Score=58.76  Aligned_cols=39  Identities=13%  Similarity=0.282  Sum_probs=32.4

Q ss_pred             eceeeEEeEEEEEeC---CcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         11 QYYEAQVYDVFVIKG---NAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G---~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +.|..+|.++.+.+|   +++.|.|.|.+.|.+   .++|++++.
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p---~i~W~~~g~   43 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPA---TYRWKMNGT   43 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCC---EEEEEECCE
Confidence            467888999988777   579999999998764   799999854

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.28  E-value=4.9e-06  Score=56.43  Aligned_cols=66  Identities=18%  Similarity=0.273  Sum_probs=44.0

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeee-ecCCceEEEccCCeEEEeecCcCCCCcceEEEee
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMT-ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTK  149 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~-~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~  149 (167)
                      ...|.+|++|+|.|..+.    +...+.|+|++. ...+... +...+++    ...+.|.+++.+|+ |.|+|...
T Consensus         9 ~~vV~~G~~VTL~C~~~~----~~~~f~l~k~g~-~~~~~~~~~~~~~~~----~a~f~I~~~~~~~~-G~Y~C~~~   75 (94)
T cd05711           9 SPVVPSGENVTLQCHSDI----RFDRFILYKEGR-SKPVLHLYEKHHGGF----QASFPLGPVTPAHA-GTYRCYGS   75 (94)
T ss_pred             CCccCCCCeEEEEEecCC----CCCEEEEEECCC-CCCceecccccCCeE----EEEEEecCCCcccC-EEEEEEEE
Confidence            346779999999998752    334679999873 2111000 0011222    23689999999999 99999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>KOG1480|consensus

Probab=98.24  E-value=1.1e-06  Score=78.24  Aligned_cols=144  Identities=14%  Similarity=0.271  Sum_probs=100.4

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCC-CcceeeEEeeCCCce-eeecCC------ceE-------------EEeeeE
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVS-DHLDVVSWADTDGGQ-YQIDNQ------DFV-------------VSQSYT   69 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~-~~~~~i~W~k~~~~~-~~~~~~------~~v-------------~~g~y~   69 (167)
                      +-|..+|++.++++|....|+|.|...+. .+.+.-.|..+..-. +-.+..      +.+             -...|.
T Consensus        25 ~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~~  104 (909)
T KOG1480|consen   25 PHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDYW  104 (909)
T ss_pred             ceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCcccee
Confidence            34888999999999999999999987764 223345676553211 101100      000             135566


Q ss_pred             EEe-----------------------------cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCc
Q psy12724         70 VNI-----------------------------MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDG  120 (167)
Q Consensus        70 c~~-----------------------------~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~  120 (167)
                      |+-                             .-+.|..++...++|+.+-  +.|...+.|+|++ ..+.+      +.
T Consensus       105 cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe--~~paae~~w~k~e-~~~~p------d~  175 (909)
T KOG1480|consen  105 CQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPE--GDPKAEVEWLKNE-VVIDP------DA  175 (909)
T ss_pred             eeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcc--cchhhhhhccccC-CCCCc------cc
Confidence            652                             1145678999999999863  6788899999997 45532      44


Q ss_pred             eEEEccCCeEEEeecCcCCCCcceEEEeeecC------cceEEEeeeCCe
Q psy12724        121 KYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL------TGETRLSATKGR  164 (167)
Q Consensus       121 r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~------~~~~~l~~~~~~  164 (167)
                      ......++.|.|..++.+|. |+|+|+|.|..      +....+.+.+++
T Consensus       176 n~~~~~d~~li~~~arlsd~-~nytc~a~ni~~~r~~~~~~v~vyv~ggw  224 (909)
T KOG1480|consen  176 NVIRASDHNLIISQARLSDS-GNYTCEATNIVAKRKSDPATVQVYVNGGW  224 (909)
T ss_pred             cchhhhcCCccccchhhhhc-ccceeeeehhhccccccceEEEEEEcCcc
Confidence            45566788999999999998 99999999976      556677777664

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.22  E-value=7.1e-06  Score=55.72  Aligned_cols=34  Identities=15%  Similarity=0.313  Sum_probs=29.5

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      ..+.+..+.+|+++.|.|.+.+.|.   |.+.|+|++
T Consensus         6 ~~~~~~~~~~G~~v~l~C~~~G~P~---p~i~W~k~~   39 (98)
T cd05870           6 IQLKNETTVENGAATLSCKAEGEPI---PEITWKRAS   39 (98)
T ss_pred             EeeccEEEcCCCcEEEEEecccCCC---CeEEEEECC
Confidence            4578999999999999999999875   479999963

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.21  E-value=3.4e-06  Score=56.50  Aligned_cols=70  Identities=27%  Similarity=0.506  Sum_probs=44.7

Q ss_pred             EeCCcEEEEeeeCCccCCc-ceeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         78 LKGNSAVLKCHIPSFVADY-VAVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        78 ~~G~~a~l~C~~~~~~~~p-~p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      ..|+.+.|.|.+.++.  | ...++|++|+ ..+....     ....++.|.+  ...|.|......|. |.|+|.|.|.
T Consensus        11 ~~~~~~~L~C~a~g~~--P~~~~i~W~~~g-~~~~~~~~~~~~~~~~~gt~~~--~s~l~v~~~~~~~~-~~y~C~v~h~   84 (95)
T cd00098          11 LLGGSVTLTCLATGFY--PPDITVTWLKNG-KELTSGVTTTPPVPNSDGTYSV--SSQLTVSPSDWNSG-DTYTCVVTHE   84 (95)
T ss_pred             HcCCCeEEEEEEeeEE--CCCcEEEEEECC-EECCCceeccccccCCCCCEEE--EEEEEECHHHhCCC-CCEEEEEEeC
Confidence            3689999999998752  4 3579999997 4543210     0011122222  12466666666698 9999999998


Q ss_pred             Cc
Q psy12724        152 LT  153 (167)
Q Consensus       152 ~~  153 (167)
                      ..
T Consensus        85 ~~   86 (95)
T cd00098          85 SL   86 (95)
T ss_pred             CC
Confidence            63

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.20  E-value=3.8e-06  Score=56.89  Aligned_cols=39  Identities=13%  Similarity=0.236  Sum_probs=31.7

Q ss_pred             eceeeEEeEEEEEeCC---cEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         11 QYYEAQVYDVFVIKGN---AAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~---~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +.|..+|.++.+.++.   ++.|.|.|.|.|.+   .++|+|++.
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P---~i~W~k~~~   43 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFP---IYKWRKNNL   43 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCC---EEEEEECCE
Confidence            4677888888776654   89999999998864   899999865

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.18  E-value=2.6e-05  Score=59.18  Aligned_cols=83  Identities=18%  Similarity=0.265  Sum_probs=55.4

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeee-------ecCCceEEEc----cCCeEEEeecCcCCCCcc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMT-------ESTDGKYLVL----PSGELHIRDVGPEDGYKS  143 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~-------~~~~~r~~~~----~~g~L~I~~v~~~D~~G~  143 (167)
                      ..|.+|++|.|.|....  +...+.++|+|... .+. .+.       ++-.+|+.+.    .+..|.|.+++.+|+ |.
T Consensus        25 v~V~ege~VtLsCs~t~--s~~~~qVtWkK~~~-~Ia-tY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDe-Gc   99 (189)
T PHA02987         25 ITVSEHVNVKISCNKTS--SFNSILITWKKNNK-TIA-GYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDN-GC   99 (189)
T ss_pred             EEEcCCCCEEEEEecCC--CCccceEEEEEcCC-CEE-EEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhC-eE
Confidence            46789999999999741  23567899999753 332 111       0112466532    245799999999999 99


Q ss_pred             eEEEeeecC-----cceEEEeeeC
Q psy12724        144 YQCRTKHRL-----TGETRLSATK  162 (167)
Q Consensus       144 Y~C~a~n~~-----~~~~~l~~~~  162 (167)
                      |.|....-.     ++.+-|+++.
T Consensus       100 Y~C~F~tfp~G~~~~gt~CLtVt~  123 (189)
T PHA02987        100 YTCIFNTLLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             EEEEEEecCCCCCceeEEEEEEEc
Confidence            999886532     4456666643

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.18  E-value=5.2e-05  Score=54.70  Aligned_cols=111  Identities=15%  Similarity=0.316  Sum_probs=58.6

Q ss_pred             EeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceEEE-eeeEEEecCeEEEeCCcEEEEeeeCCccCCcc-eeE
Q psy12724         23 IKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVVS-QSYTVNIMDEHVLKGNSAVLKCHIPSFVADYV-AVE  100 (167)
Q Consensus        23 ~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v~~-g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~-p~i  100 (167)
                      ..-|.+.|.|.+.+.++.. ....++.             +.. +.....+.+....+|+.+.|.|.+.+.  .|. +.|
T Consensus         9 ~~~D~G~Y~C~~~~~~~~~-~~~~~l~-------------v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~--~P~~~~i   72 (139)
T cd05771           9 TVHDEGTYICSVSTPPHQA-QQIIQLS-------------VSEPPRVRLSLEKLVSMIEEPQTLICHIAGY--YPLDVQV   72 (139)
T ss_pred             CHHHCEEEEEEEEccCcce-eeEEEEE-------------EecCCceEEeCCCceeecCCcEEEEEEECCC--CCCCeEE
Confidence            3457899999987654321 0111111             111 112222233334479999999999864  254 589


Q ss_pred             EEEeCCCeeeEE-----ee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        101 SWISDQGEELFV-----DM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       101 ~W~k~~~~~l~~-----~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +|+|++.....+     ..     .++.++.|.+  ...|.|..-...+. +.|+|.+.+..
T Consensus        73 ~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~--~s~L~v~~~~~~~g-~~ytC~V~H~~  131 (139)
T cd05771          73 EWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSL--SSHLTLEPGTEDAG-ATYTCRVSHVS  131 (139)
T ss_pred             EEEECCCCCccceeccCCeEecceEeCCCCCEEE--EEEEEecCCccCCC-CEEEEEEEcCC
Confidence            999987321100     00     0011222222  12466655444455 79999999865

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=98.18  E-value=6.3e-06  Score=54.90  Aligned_cols=31  Identities=19%  Similarity=0.414  Sum_probs=27.1

Q ss_pred             EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      ...+.+|+++.|.|.+.|.|.|   .++|.|++.
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P---~v~W~k~~~   34 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAP---TVTWSRGDK   34 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCC---eEEEEECCE
Confidence            5678999999999999998864   899999854

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.16  E-value=9.7e-06  Score=55.91  Aligned_cols=71  Identities=18%  Similarity=0.251  Sum_probs=45.9

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCe----e--eEEeee-------ec--CCceEEEccCC---eEEEeecCc
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGE----E--LFVDMT-------ES--TDGKYLVLPSG---ELHIRDVGP  137 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~----~--l~~~~~-------~~--~~~r~~~~~~g---~L~I~~v~~  137 (167)
                      .+.+|++|+|.|.....   -...+.|+|....    +  |.....       +.  ..+|+.+..++   .|.|++++.
T Consensus         2 ~v~~G~~vtL~C~~~~~---~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~   78 (104)
T cd05720           2 DAELGQKVELKCEVLNS---SPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQK   78 (104)
T ss_pred             cccCCCeEEEEEEecCC---CCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCH
Confidence            45689999999998532   2345799985421    1  111100       00  13466653322   699999999


Q ss_pred             CCCCcceEEEeee
Q psy12724        138 EDGYKSYQCRTKH  150 (167)
Q Consensus       138 ~D~~G~Y~C~a~n  150 (167)
                      +|+ |.|.|...+
T Consensus        79 sDs-gtY~Ca~~~   90 (104)
T cd05720          79 ENE-GYYFCSVAS   90 (104)
T ss_pred             HHC-EEEEEEEcc
Confidence            999 999998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.15  E-value=3.3e-06  Score=56.41  Aligned_cols=35  Identities=17%  Similarity=0.230  Sum_probs=29.7

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      ..|++..+.+|+++.|.|.|.|.|.   |.+.|.+++.
T Consensus         5 ~~p~~~~v~~G~~v~l~C~~~G~P~---p~v~W~~~g~   39 (90)
T cd04972           5 DGPNATVVYEGGTATIRCTAEGSPL---PKVEWIIAGL   39 (90)
T ss_pred             cCCcCEEEcCCCcEEEEEEEEEcCC---CeEEEEECCE
Confidence            3566777999999999999999875   4899999864

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.14  E-value=1.5e-05  Score=52.58  Aligned_cols=65  Identities=20%  Similarity=0.338  Sum_probs=41.1

Q ss_pred             cEEEEeeeCCccCCcceeEEEEeCCCeeeEEee---eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         82 SAVLKCHIPSFVADYVAVESWISDQGEELFVDM---TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        82 ~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~---~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+.|.|.+.+  +.|.+.++|+|++ ..+....   ....++.|.+.  ..|.+......|. +.|+|.|.|..
T Consensus         1 ~~~L~C~~~~--~~P~~~v~W~~~~-~~l~~~~~~~~~~~~~~~~~~--s~l~~~~~~~d~g-~~~~C~v~h~~   68 (82)
T cd05761           1 EVELTCTSSG--SKPAATIRWFKGD-KELKGVKLKEEDENGKTFTVT--SSLRFQVDREDDG-APIICRVDHPA   68 (82)
T ss_pred             CEEEEEEecC--cCcCCeEEEEECC-EEccCceeeEecCCCCEEEEE--EEEEEEcchhhCC-CEEEEEEeChh
Confidence            3689999976  4688899999997 5553110   00112223222  2456655555665 79999999986

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.13  E-value=5.6e-06  Score=54.36  Aligned_cols=34  Identities=26%  Similarity=0.421  Sum_probs=28.0

Q ss_pred             EEeEEEEEeCCcEEEEeec-CCCCCCcceeeEEeeCCC
Q psy12724         16 QVYDVFVIKGNAAVFKCNL-PSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a-~~~~~~~~~~i~W~k~~~   52 (167)
                      +|.+..+.+|+++.|.|.+ .+.|.   |.+.|+|++.
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~---p~i~W~k~g~   36 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPE---PTVSWRKDGQ   36 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCC---CEEEEEECCE
Confidence            5788999999999999998 56554   4799999753

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.13  E-value=2.1e-05  Score=52.27  Aligned_cols=64  Identities=22%  Similarity=0.355  Sum_probs=42.7

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEeee-e-cCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMT-E-STDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~-~-~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.|.|.+.+  +.|.+.|+|+|++ ..+..... + ...+.+..  ...|.|..-...|. ..|+|.|.|..
T Consensus         2 ~~L~C~s~g--SkP~A~I~W~k~~-~~l~~~~~~~~~~~~~~t~--~S~L~~~p~~eDdG-~~~~C~a~~~~   67 (82)
T cd05883           2 IELNCTAMA--SKPAATIRWFKGN-KELTGKSTVEETWSRMFTV--TSQLMLKVTKEDDG-VPVICLVDHPA   67 (82)
T ss_pred             EEEEEEecC--CCCCCEEEEEECC-EECcCcccceeccCCCcEE--EEEEEEECchhhCC-CEEEEEEcCcc
Confidence            679999987  5799999999997 56532110 0 01112222  23588866666665 79999999986

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.12  E-value=5.4e-06  Score=53.37  Aligned_cols=48  Identities=17%  Similarity=0.416  Sum_probs=33.4

Q ss_pred             eCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecC--------CceE------EEeeeEEEecCe
Q psy12724         24 KGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN--------QDFV------VSQSYTVNIMDE   75 (167)
Q Consensus        24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~--------~~~v------~~g~y~c~~~~~   75 (167)
                      +|+++.|.|.+.+.|.+   .++|.|++. .+..+.        ...+      ..|.|+|.+.|.
T Consensus         1 eG~~v~l~C~~~g~P~p---~i~W~k~g~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~   62 (74)
T cd05745           1 EGQTVDFLCEAQGYPQP---VIAWTKGGS-QLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNI   62 (74)
T ss_pred             CCCeEEEEeECCEecCC---EEEEEECCE-ECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeC
Confidence            69999999999998864   799999854 332211        1111      268888888764

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>smart00406 IGv Immunoglobulin V-Type

Probab=98.11  E-value=1e-05  Score=52.07  Aligned_cols=64  Identities=25%  Similarity=0.361  Sum_probs=40.0

Q ss_pred             cEEEEeeeCCccCCcceeEEEEeCCC-e--e-eEEe------ee-ecCCceEEEccC-----CeEEEeecCcCCCCcceE
Q psy12724         82 SAVLKCHIPSFVADYVAVESWISDQG-E--E-LFVD------MT-ESTDGKYLVLPS-----GELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        82 ~a~l~C~~~~~~~~p~p~i~W~k~~~-~--~-l~~~------~~-~~~~~r~~~~~~-----g~L~I~~v~~~D~~G~Y~  145 (167)
                      +|.|+|.+... ..+...+.|++... .  . +...      .. +...+|+.+..+     -.|.|.+++.+|+ |.|.
T Consensus         1 ~v~l~C~~~~~-~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~-G~Y~   78 (81)
T smart00406        1 SVTLSCKASGF-TFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDT-GTYY   78 (81)
T ss_pred             CEEEEEEEecc-ccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHC-EEEE
Confidence            58899998643 11234789988542 1  1 1111      00 012457765533     2699999999999 9999


Q ss_pred             EE
Q psy12724        146 CR  147 (167)
Q Consensus       146 C~  147 (167)
                      |.
T Consensus        79 C~   80 (81)
T smart00406       79 CA   80 (81)
T ss_pred             Ec
Confidence            96

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=98.10  E-value=7.4e-06  Score=52.94  Aligned_cols=47  Identities=15%  Similarity=0.278  Sum_probs=32.9

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCce---------E------EEeeeEEEecCeE
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDF---------V------VSQSYTVNIMDEH   76 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~---------v------~~g~y~c~~~~~~   76 (167)
                      |+++.|+|.+.+.|.   |.|+|.|++. .+..+ .+.         +      ..|.|+|.+.|..
T Consensus         1 G~~~~l~C~~~g~P~---p~v~W~k~~~-~l~~~-~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~   62 (73)
T cd05852           1 GGRVIIECKPKAAPK---PKFSWSKGTE-LLVNN-SRISIWDDGSLEILNITKLDEGSYTCFAENNR   62 (73)
T ss_pred             CCeEEEEEecceeCC---CEEEEEeCCE-ecccC-CCEEEcCCCEEEECcCChhHCEEEEEEEECCC
Confidence            789999999999875   4899999854 33222 121         1      2688888887653

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.09  E-value=2.3e-05  Score=55.24  Aligned_cols=75  Identities=20%  Similarity=0.326  Sum_probs=47.4

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC--Cee--eEEeee--------ecCCceEEEccCC-----eEEEeecC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ--GEE--LFVDMT--------ESTDGKYLVLPSG-----ELHIRDVG  136 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~--~~~--l~~~~~--------~~~~~r~~~~~~g-----~L~I~~v~  136 (167)
                      ...+.+|++|+|+|......- -...+.|+|..  +.+  |.....        +.-.+||.+..++     .|.|++++
T Consensus         6 ~~~v~~G~~vtL~C~~~~~~~-~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   84 (117)
T cd04981           6 PGLVKPGQSLKLSCKASGFTF-TSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLT   84 (117)
T ss_pred             CeEEcCCCCEEEEEEEeCCCc-ccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCC
Confidence            356788999999998753200 13457998743  122  111100        0113577664221     59999999


Q ss_pred             cCCCCcceEEEeee
Q psy12724        137 PEDGYKSYQCRTKH  150 (167)
Q Consensus       137 ~~D~~G~Y~C~a~n  150 (167)
                      .+|+ |.|.|.+..
T Consensus        85 ~~Ds-a~YyCa~~~   97 (117)
T cd04981          85 PEDT-AVYYCARGL   97 (117)
T ss_pred             HHHC-EEEEEEEEc
Confidence            9999 999998864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.09  E-value=1.3e-05  Score=54.53  Aligned_cols=35  Identities=20%  Similarity=0.412  Sum_probs=29.7

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCce
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQ   54 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~   54 (167)
                      -.++.|.+|++|.|+|.+.+.+.   |.|.|.|++++.
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~---~~v~W~k~~~~~   38 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDN---SSLQWSNTAQQT   38 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCC---CeEEEeccCccE
Confidence            46789999999999999999775   479999987653

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.08  E-value=1.3e-05  Score=51.29  Aligned_cols=49  Identities=16%  Similarity=0.282  Sum_probs=33.9

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--------ceE------EEeeeEEEecCeE
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--------DFV------VSQSYTVNIMDEH   76 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--------~~v------~~g~y~c~~~~~~   76 (167)
                      |+++.|.|.+.+.|.   |.+.|.++++..+.....        ..+      ..|.|+|.+.+..
T Consensus         1 G~~~~l~C~~~g~P~---p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~   63 (74)
T cd05764           1 GQRATLRCKARGDPE---PAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAA   63 (74)
T ss_pred             CCeEEEEEEccCcCC---CEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCC
Confidence            789999999998875   479999876655532211        011      2688888887653

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=98.07  E-value=1e-05  Score=54.32  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=28.7

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      -|..+.+.+|+++.|.|.+.+.|.+   .+.|+|++.
T Consensus         7 lp~~v~v~~G~~v~L~C~v~G~P~p---~v~W~k~g~   40 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTVFGDPDP---EVSWLKNDQ   40 (92)
T ss_pred             CCceEEEeCCCcEEEEEEEEecCCC---eEEEEECCE
Confidence            4556889999999999999998754   799999853

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.06  E-value=1.9e-05  Score=53.04  Aligned_cols=55  Identities=18%  Similarity=0.243  Sum_probs=38.6

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCce-------E-------EEeeeEEEecCe
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDF-------V-------VSQSYTVNIMDE   75 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~-------v-------~~g~y~c~~~~~   75 (167)
                      +|++..+.+|+++.|.|.+.+ +   .+.|.|.+++. .+..+..+.       +       .+|.|+|.+.+.
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~---~~~i~W~~ng~-~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-N---LARVVWKFDGK-VLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-C---CCeEEEEECCE-ECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence            688999999999999999854 2   25799999953 444332221       1       168888877654

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd00096 Ig Immunoglobulin domain

Probab=98.03  E-value=9.2e-06  Score=49.06  Aligned_cols=65  Identities=18%  Similarity=0.286  Sum_probs=42.3

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEeeee-cCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDMTE-STDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~-~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.|.|.+.+   .+.+.+.|++++. ........ .............|.|.+++.+|+ |.|.|.+.+..
T Consensus         1 ~~l~C~~~~---~~~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~-g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASG---PPPPTITWLKNGK-PLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDS-GTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecC---CCCCcEEEEECCE-ECCCcccEEeccccCcceeEEEEEECccCcccC-cEEEEEEecCc
Confidence            468999975   4778899999863 32111000 000111122345799999999998 99999998874

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.03  E-value=2.9e-05  Score=51.46  Aligned_cols=64  Identities=20%  Similarity=0.328  Sum_probs=41.2

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEee---eecCC-ceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDM---TESTD-GKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~---~~~~~-~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.|.|.+.+  +.|.+.|+|+||+ ..+....   .++.+ +.|.+.  ..|.|......|. ..|+|.|.|..
T Consensus         2 ~~LtC~a~g--~~P~~~ItW~k~g-~~l~~~~~~~~~~~~~~t~~~~--s~l~~~~~~~d~g-~~~tC~v~h~~   69 (83)
T cd07705           2 AKLRCTSSG--SKPAANIKWRKGD-QELEGAPTSVLEDGNGKTFTVS--SSVEFQVTREDDG-AEITCSVGHES   69 (83)
T ss_pred             EEEEEEecC--ccCCCEeEEEECC-EECCCcceeEEECCCCCEEEEE--EEEEEEecchhCC-CEEEEEEECcc
Confidence            689999976  3588899999997 5543110   00111 122221  2466656667776 89999999986

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.03  E-value=1.6e-05  Score=53.39  Aligned_cols=34  Identities=12%  Similarity=0.366  Sum_probs=28.1

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      ...+..+..|+++.|.|.+.+.|.+   .+.|+|++.
T Consensus         9 ~~~~~~~~~G~~v~L~C~~~g~P~p---~v~W~k~g~   42 (95)
T cd05730           9 SEVNATANLGQSVTLACDADGFPEP---TMTWTKDGE   42 (95)
T ss_pred             cccceEEeCCCCEEEEEeccEeCCC---EEEEEECCE
Confidence            4456789999999999999988754   799999753

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=98.01  E-value=1.9e-05  Score=54.32  Aligned_cols=55  Identities=11%  Similarity=0.151  Sum_probs=38.9

Q ss_pred             eEEEEEeCCcEEEEeecCC-CCCCcceeeEEeeCCCceeeecCC-----------c--e-E--------EEeeeEEEecC
Q psy12724         18 YDVFVIKGNAAVFKCNLPS-FVSDHLDVVSWADTDGGQYQIDNQ-----------D--F-V--------VSQSYTVNIMD   74 (167)
Q Consensus        18 ~~~~v~~G~~~~l~C~a~~-~~~~~~~~i~W~k~~~~~~~~~~~-----------~--~-v--------~~g~y~c~~~~   74 (167)
                      ++..|.+|+++.|+|.+.+ .|.   |.+.|.||+ ..+..+..           +  . +        .+|.|+|.+.|
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~---p~v~W~Kdg-~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N   86 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPP---PHINWTYDN-RTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASN   86 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCC---CccEEEeCC-eeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEEC
Confidence            3678999999999999999 553   589999985 34432111           1  0 1        26999999987


Q ss_pred             eE
Q psy12724         75 EH   76 (167)
Q Consensus        75 ~~   76 (167)
                      ..
T Consensus        87 ~~   88 (101)
T cd04975          87 SD   88 (101)
T ss_pred             CC
Confidence            64

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.00  E-value=3.1e-05  Score=53.37  Aligned_cols=75  Identities=19%  Similarity=0.247  Sum_probs=46.6

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCccee--EEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeee
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAV--ESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~--i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      ....+.+|+..+|.|.+.+  +.|.+.  |+|+|++ ..+..........+ .......|.+. +..+|-.-.|+|.|.+
T Consensus         9 ~p~~~~eG~~~tL~C~v~g--~~P~a~L~i~W~rG~-~~l~~~~~~~~~~~-~~~~~stlt~~-~~r~D~g~~~sC~A~l   83 (100)
T cd05755           9 LPSWQPVGKNYTLQCDVPG--VAPRQNLTVVLLRGN-ETLSRQPFGDNTKS-PVNAPATITIT-VDREDHGANFSCETEL   83 (100)
T ss_pred             CCCcccCCCcEEEEEEEcC--cCCCCcEEEEEeeCC-EEcccceeccccCC-CceeEEEEEEe-cchhhCCcEEEEEEEe
Confidence            3446789999999999987  468876  7999997 55532110000000 01112356665 4455541499999999


Q ss_pred             cC
Q psy12724        151 RL  152 (167)
Q Consensus       151 ~~  152 (167)
                      .+
T Consensus        84 ~l   85 (100)
T cd05755          84 DL   85 (100)
T ss_pred             cc
Confidence            87

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=97.98  E-value=1.3e-05  Score=51.24  Aligned_cols=47  Identities=15%  Similarity=0.291  Sum_probs=31.7

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeCCCceeeecC-----Cc--eE----EEeeeEEEecCe
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN-----QD--FV----VSQSYTVNIMDE   75 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~-----~~--~v----~~g~y~c~~~~~   75 (167)
                      |+++.|.|.|.|.|.|   .|.|.|++. .+.+..     ..  .+    ..|.|+|.+.|.
T Consensus         1 G~~v~L~C~a~G~P~P---~v~W~k~g~-~l~~~~~~~~~~~~L~i~~~~d~G~Y~C~A~N~   58 (69)
T cd05739           1 GGSVNLTCVAVGAPMP---YVKWMKGGE-ELTKEDEMPVGRNVLELTNIYESANYTCVAISS   58 (69)
T ss_pred             CCeEEEEEEeeecCCC---EEEEEECCE-ECCCccceecCccEEEEeccccCeeEEEEEEeC
Confidence            7899999999998864   899999865 343211     10  01    257777777654

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.97  E-value=8.1e-05  Score=49.89  Aligned_cols=64  Identities=22%  Similarity=0.336  Sum_probs=47.6

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEee
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTK  149 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~  149 (167)
                      +..++.|++.+|.|+.++. ..|.+.|+|+..++....          -.......|.+.+++..|+ |..+|..+
T Consensus         8 ~~~lL~G~sLtLtl~~~s~-s~p~~~i~w~~P~n~~~~----------~~~~~~ktL~~~qv~~qdS-G~WtC~V~   71 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSN-SLPAFKVEWRGPGNKSKQ----------ILNQDKKTLNLVQLGPNDS-GTWDCIVS   71 (88)
T ss_pred             CCeeecCCcEEEEEecCCC-CCCCccEEEeCCCCccce----------eccCCccEEEeceeCcccC-CEEEEEEE
Confidence            4578899999999999653 346669999876642221          1112345799999999999 99999985

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=97.95  E-value=2.3e-05  Score=53.16  Aligned_cols=34  Identities=18%  Similarity=0.321  Sum_probs=27.6

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +....+.+|+++.|.|.|.+.|.+  ..|.|.+++.
T Consensus         8 ~~~~~~~~G~~v~L~C~~~g~P~P--~~v~W~~~~~   41 (98)
T cd05758           8 EATQYAILGDKGRVECFIFSTPPP--DRIVWTWKEN   41 (98)
T ss_pred             CCcEEEeCCCcEEEEEEEcccCCC--CEeEEEECCE
Confidence            456778999999999999988754  1599999854

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=97.94  E-value=3e-05  Score=51.89  Aligned_cols=23  Identities=22%  Similarity=0.520  Sum_probs=20.5

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      |+++.|+|.|.+.|.   |.|+|+|+
T Consensus         1 G~~v~l~C~v~g~P~---P~i~W~k~   23 (90)
T cd04974           1 GSDVEFHCKVYSDAQ---PHIQWLKH   23 (90)
T ss_pred             CCcEEEEEEEeCCCC---CeEEEEEe
Confidence            789999999999986   47999996

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=97.91  E-value=3.7e-05  Score=52.87  Aligned_cols=54  Identities=13%  Similarity=0.138  Sum_probs=39.9

Q ss_pred             EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC------------c-----eE------EEeeeEEEecCe
Q psy12724         19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ------------D-----FV------VSQSYTVNIMDE   75 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~------------~-----~v------~~g~y~c~~~~~   75 (167)
                      ...+..|+.+.|.|.+.++|.|   .+.|+|++. ++..+..            +     .+      .+|.|+|.+.|.
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P---~v~W~kdg~-~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~   87 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPP---QIRWLKDNR-TLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNE   87 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCC---ceEEEECCE-ECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcC
Confidence            6778899999999999999865   799999854 4432210            1     11      279999999886


Q ss_pred             E
Q psy12724         76 H   76 (167)
Q Consensus        76 ~   76 (167)
                      .
T Consensus        88 ~   88 (101)
T cd05859          88 D   88 (101)
T ss_pred             C
Confidence            4

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=97.89  E-value=3.1e-05  Score=50.18  Aligned_cols=27  Identities=15%  Similarity=0.321  Sum_probs=22.5

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeCCCcee
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADTDGGQY   55 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~   55 (167)
                      |+.+.|.|.|.+.|.+   .|+|+|++ +.+
T Consensus         1 g~~~~l~C~a~G~P~P---~i~W~k~g-~~i   27 (76)
T cd05868           1 GEDGTLICRANGNPKP---SISWLTNG-VPI   27 (76)
T ss_pred             CCCEEEEEEeeEeCCC---eEEEEECC-EEc
Confidence            7899999999999864   89999974 444

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=97.89  E-value=3e-05  Score=50.60  Aligned_cols=35  Identities=20%  Similarity=0.346  Sum_probs=27.6

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceee
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ   56 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~   56 (167)
                      |++..+.+|+++.|.|.+.+.+    +.+.|.|++ ..+.
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~~----~~v~W~k~g-~~l~   35 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDDV----QSINWTKDG-VQLG   35 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCCC----ceEEEeeCC-cCCC
Confidence            4567899999999999998853    369999985 3443

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.87  E-value=6.8e-05  Score=50.82  Aligned_cols=33  Identities=27%  Similarity=0.520  Sum_probs=27.3

Q ss_pred             eEEEEEeCCcEEEEeecCCC-----CCCcceeeEEeeCCCc
Q psy12724         18 YDVFVIKGNAAVFKCNLPSF-----VSDHLDVVSWADTDGG   53 (167)
Q Consensus        18 ~~~~v~~G~~~~l~C~a~~~-----~~~~~~~i~W~k~~~~   53 (167)
                      .+..+.+|+++.|.|.+.+.     |.   |.|.|+|++..
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~---~~v~Wyk~~~~   44 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPG---LNLTWYKSDGK   44 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCC---ceEEEEEcCCC
Confidence            57788999999999999984     43   47999999754

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.87  E-value=9.6e-05  Score=49.01  Aligned_cols=64  Identities=20%  Similarity=0.339  Sum_probs=41.1

Q ss_pred             EEEEeeeCCccCCcceeEEEEeCCCeeeEEee----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         83 AVLKCHIPSFVADYVAVESWISDQGEELFVDM----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        83 a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.|.|.+.+.  .|...|+|+||+ ..+....    .+..++.|.+.  ..|.|..-...|. ..|+|.+.|..
T Consensus         2 ~~LtC~a~gf--~P~~~itW~kng-~~l~~~~~~~~~~~~~~t~~~~--s~L~~~~~~~d~g-~~ytC~v~h~~   69 (83)
T cd05884           2 MQLTCKTSGS--KPAADIRWFKND-KEIKDVKYLKEEDANRKTFTVS--STLDFRVDRSDDG-VAIICRVDHES   69 (83)
T ss_pred             EEEEEEeCCc--cCCCEEEEEECC-EECcCceeeEeeCCCCCEEEEE--EEEEEEcccccCC-CEEEEEEechh
Confidence            6799999873  577899999997 4542110    00112223222  2577765556666 79999999976

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=97.86  E-value=3.9e-05  Score=50.29  Aligned_cols=30  Identities=17%  Similarity=0.329  Sum_probs=25.2

Q ss_pred             EEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         20 VFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        20 ~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      ..|.+|+++.|.|.+.+.|.   |.+.|+|++.
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~---p~i~W~k~g~   33 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPT---PTMRWLKNGK   33 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCC---CEEEEEECCE
Confidence            45788999999999998865   4799999854

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=97.86  E-value=4.3e-05  Score=51.03  Aligned_cols=24  Identities=21%  Similarity=0.459  Sum_probs=21.0

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      |+++.|.|.+.+.|.   +.+.|+|++
T Consensus         1 g~~~~l~C~~~g~p~---~~i~W~k~~   24 (88)
T cd05735           1 GQKKEMSCTAHGEKP---IIVRWEKED   24 (88)
T ss_pred             CCeEEEEEEEECCCC---CEEEEeeCC
Confidence            789999999999865   379999986

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=97.83  E-value=3.8e-05  Score=49.59  Aligned_cols=25  Identities=16%  Similarity=0.533  Sum_probs=21.4

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      |+++.|.|.+.+.|.+   .++|+|++.
T Consensus         1 G~~v~l~C~~~G~P~p---~i~W~k~g~   25 (76)
T cd05867           1 GETARLDCQVEGIPTP---NITWSINGA   25 (76)
T ss_pred             CCeEEEEEEeeEeCCC---eEEEEECCE
Confidence            7899999999988764   799999753

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=97.82  E-value=4.2e-05  Score=48.84  Aligned_cols=45  Identities=13%  Similarity=0.240  Sum_probs=29.8

Q ss_pred             cEEEEeecCCCCCCcceeeEEeeCCCceeeecC--------CceE------EEeeeEEEecCe
Q psy12724         27 AAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN--------QDFV------VSQSYTVNIMDE   75 (167)
Q Consensus        27 ~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~--------~~~v------~~g~y~c~~~~~   75 (167)
                      .+.|+|.+.|.|.   |.++|+|++.. +.+..        ...+      ..|.|+|.+.|.
T Consensus         1 ~v~l~C~~~G~P~---p~v~W~k~g~~-~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~   59 (71)
T cd05723           1 DVIFECEVTGKPT---PTVKWVKNGDM-VIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAEND   59 (71)
T ss_pred             CEEEEEEEEEeCC---CEEEEEECCeE-CCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcC
Confidence            4789999999886   48999998653 32211        1111      267888887664

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=97.82  E-value=5.6e-05  Score=50.68  Aligned_cols=33  Identities=6%  Similarity=0.172  Sum_probs=28.8

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      .+.+..+.+|+++.|.|.+.+.|.+   .+.|++++
T Consensus         7 ~~~~~~~~~g~~v~l~C~~~g~p~p---~v~W~~~~   39 (96)
T cd05732           7 YLENQTAVELEQITLTCEAEGDPIP---EITWRRAT   39 (96)
T ss_pred             ecCceeEecCCcEEEEEEEeEcCCC---cEEEEECC
Confidence            5678899999999999999998754   79999975

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=97.82  E-value=6.1e-05  Score=50.97  Aligned_cols=38  Identities=5%  Similarity=0.076  Sum_probs=28.8

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      +.+...+.+..+..|+++.|.|.+.|.|.   |.++|.+++
T Consensus         3 p~i~~~~~~~~~~~g~~v~l~C~~~G~P~---P~v~W~~~~   40 (97)
T cd05869           3 PKITYVENQTAMELEEQITLTCEASGDPI---PSITWRTST   40 (97)
T ss_pred             ceEEEccCceEEEcCCCEEEEEEeeEeCC---CEEEEEECC
Confidence            44555555555556899999999999875   479999974

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=97.82  E-value=4e-05  Score=51.23  Aligned_cols=39  Identities=13%  Similarity=0.210  Sum_probs=30.3

Q ss_pred             eceeeEEeEEEEEeC---CcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         11 QYYEAQVYDVFVIKG---NAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G---~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +.|..+|.++.+.+|   +++.|.|.+.+.|.   |.++|+|++.
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~---p~i~W~k~~~   43 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPP---PTYRWLMNGT   43 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCC---CEEEEEECCE
Confidence            457778888776554   67999999988775   4899999854

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=97.80  E-value=5.7e-05  Score=48.50  Aligned_cols=23  Identities=17%  Similarity=0.520  Sum_probs=19.1

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCCc
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDGG   53 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~~   53 (167)
                      |.|.|.+.+.|.|   .++|+|++..
T Consensus         1 a~l~C~~~G~P~P---~v~W~k~~~~   23 (75)
T cd05763           1 ARLECAATGHPTP---QIAWQKDGGT   23 (75)
T ss_pred             CEeEeecccccCC---EEEEEeCCCc
Confidence            5799999998864   7999998653

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.79  E-value=6.2e-05  Score=50.66  Aligned_cols=33  Identities=9%  Similarity=0.223  Sum_probs=27.5

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      .+++..+.+|+++.|.|.|.+. .   |.|.|+|++.
T Consensus         9 ~~~~~~v~~g~~v~l~C~a~g~-~---p~i~W~kng~   41 (91)
T cd05740           9 SVGNQPPEDNQPVTLTCEAEGQ-A---TYIWWVNNGS   41 (91)
T ss_pred             ccCccccccCCcEEEEEEeCCC-C---CEEEEEECCE
Confidence            3456789999999999999988 4   4799999854

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=97.78  E-value=8.2e-05  Score=48.93  Aligned_cols=39  Identities=21%  Similarity=0.281  Sum_probs=30.2

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCc
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGG   53 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~   53 (167)
                      ....|.+..+.+|+++.|.|.+.+...  .+.+.|.+++..
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~~~~~--~~~i~W~~~~~~   42 (85)
T cd05754           4 TVEEPRSQEVRPGADVSFICRAKSKSP--AYTLVWTRVGGG   42 (85)
T ss_pred             EecCCCceEEcCCCCEEEEEEcCCCCC--CcEEEEEECCCc
Confidence            345677889999999999999976322  358999998653

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=97.78  E-value=4.5e-05  Score=51.32  Aligned_cols=34  Identities=18%  Similarity=0.268  Sum_probs=28.6

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      .|..+.+.+|+++.|.|.+.+.|.+   .+.|+|++.
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p---~i~W~k~~~   40 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDP---EVIWFKNDQ   40 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCC---eEEEEECCE
Confidence            3567889999999999999887754   799999865

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=97.75  E-value=7.5e-05  Score=47.78  Aligned_cols=25  Identities=12%  Similarity=0.407  Sum_probs=21.2

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      |+++.|.|.+.+.|.+   .|.|++++.
T Consensus         1 G~~~~l~C~~~g~P~p---~i~W~~~g~   25 (76)
T cd04978           1 GETGRLDCEAEGIPQP---TITWRLNGV   25 (76)
T ss_pred             CCeEEEEEEceeeCCC---EEEEEECCE
Confidence            7899999999988754   799999754

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=97.74  E-value=4.5e-05  Score=48.62  Aligned_cols=45  Identities=7%  Similarity=0.193  Sum_probs=31.5

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCCceeeecCCc-eE--------EEeeeEEEecCeE
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD-FV--------VSQSYTVNIMDEH   76 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~-~v--------~~g~y~c~~~~~~   76 (167)
                      +.|.|.+.+.|.|   .+.|+|++ +.+...... .+        .+|.|+|.+.|..
T Consensus         1 ~~l~c~v~g~P~P---~v~W~kdg-~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~   54 (67)
T cd05863           1 VKLPVKVAAYPPP---EFQWYKDG-KLISGKHSQHSLQIKDVTEASAGTYTLVLWNSA   54 (67)
T ss_pred             CEEEEEEEEeCCC---EEEEEECC-EECcccCCcCEEEECCCCHHHCEEEEEEEEECC
Confidence            3699999999865   79999984 455432221 11        3799999997653

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=97.72  E-value=6.4e-05  Score=48.85  Aligned_cols=22  Identities=9%  Similarity=0.471  Sum_probs=18.3

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +.|+|.+.+.|.|   .|.|+|++.
T Consensus         1 v~l~C~v~G~P~P---~i~W~k~~~   22 (75)
T cd05892           1 VKLECQISAIPPP---KIFWKRNNE   22 (75)
T ss_pred             CEEEEEEEecCCC---eEEEEECCE
Confidence            4799999999864   899999853

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=97.72  E-value=8.5e-05  Score=47.47  Aligned_cols=48  Identities=13%  Similarity=0.196  Sum_probs=32.9

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeCCCceeeec--------CCceE------EEeeeEEEecCeE
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID--------NQDFV------VSQSYTVNIMDEH   76 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~--------~~~~v------~~g~y~c~~~~~~   76 (167)
                      |+++.|.|.+.+.|.   |.++|+|++. .+..+        +...+      ..|.|+|.+.|..
T Consensus         1 G~~v~L~C~~~g~P~---p~v~W~k~~~-~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   62 (73)
T cd04969           1 GGDVIIECKPKAAPK---PTISWSKGTE-LLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFF   62 (73)
T ss_pred             CCeEEEEEeeeEcCC---CEEEEEECCE-EcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCC
Confidence            789999999988775   4799999864 33221        11111      2688999887653

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=97.70  E-value=5.8e-05  Score=49.00  Aligned_cols=22  Identities=9%  Similarity=0.418  Sum_probs=18.7

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +.|+|.+.|.|.|   .|.|+|++.
T Consensus         1 v~l~C~v~G~P~P---~v~W~k~~~   22 (75)
T cd05893           1 VRLECRVSGVPHP---QIFWKKENE   22 (75)
T ss_pred             CEEEEEEeEecCC---EEEEEECCE
Confidence            4799999999864   899999864

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=97.68  E-value=0.00015  Score=48.23  Aligned_cols=26  Identities=15%  Similarity=0.472  Sum_probs=22.1

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeCCCc
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADTDGG   53 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~~   53 (167)
                      |+++.|.|.+.+.|.+   .+.|+|++.+
T Consensus         1 G~~v~L~C~~~g~P~p---~v~W~k~g~~   26 (90)
T cd05726           1 GRTVTFQCEATGNPQP---AIFWQKEGSQ   26 (90)
T ss_pred             CCEEEEEEECCccCCC---EEEEEeCCCc
Confidence            7899999999988754   7999998654

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=97.67  E-value=0.00012  Score=50.08  Aligned_cols=58  Identities=17%  Similarity=0.257  Sum_probs=37.9

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee-c---------CCceE------EEeeeEEEecCeE
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI-D---------NQDFV------VSQSYTVNIMDEH   76 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~-~---------~~~~v------~~g~y~c~~~~~~   76 (167)
                      .+...|.+|+.++|+|..+...++  +.+.|.|++...+.. +         |+++.      .+|.|+|.+++..
T Consensus        10 ~~~~~v~eG~~~~L~C~pP~g~P~--p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~   83 (96)
T cd05727          10 RDEVKVKEGWGVVLFCDPPPHYPD--LSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPS   83 (96)
T ss_pred             cCceeeeeCCcEEEeeCCCCCCCC--CEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecc
Confidence            345668999999999998766544  589999985432211 1         22211      2688888886643

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=97.66  E-value=0.00015  Score=48.33  Aligned_cols=23  Identities=22%  Similarity=0.499  Sum_probs=20.1

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      |+++.|+|.+.+.|.   |.|+|+|+
T Consensus         1 G~~v~L~C~~~g~P~---P~i~W~k~   23 (90)
T cd05858           1 GSTVEFVCKVYSDAQ---PHIQWLKH   23 (90)
T ss_pred             CCeEEEEEEEecCCC---CEEEEEEe
Confidence            789999999998876   48999985

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.65  E-value=0.00015  Score=49.48  Aligned_cols=37  Identities=27%  Similarity=0.390  Sum_probs=29.1

Q ss_pred             EEeEEEEEeCCcEEEEee-cCCCCCCcceeeEEeeCCCcee
Q psy12724         16 QVYDVFVIKGNAAVFKCN-LPSFVSDHLDVVSWADTDGGQY   55 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~-a~~~~~~~~~~i~W~k~~~~~~   55 (167)
                      ..+.+.|.+|+++.|.|. ..++|.   |.|.|.+++...+
T Consensus         9 ~~~~v~V~eG~~~~L~C~pP~g~P~---P~i~W~~~~~~~i   46 (95)
T cd05845           9 KIRPVEVEEGDSVVLPCNPPKSAVP---LRIYWMNSDLLHI   46 (95)
T ss_pred             ccceeEEecCCCEEEEecCCCCCCC---CEEEEECCCCccc
Confidence            357889999999999997 566665   4899998765434

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=97.65  E-value=0.00025  Score=47.06  Aligned_cols=33  Identities=27%  Similarity=0.428  Sum_probs=27.4

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      .+....+.+|+++.|+|.+.+ +.   +.+.|+|++.
T Consensus         2 ~~~~~~v~~g~~v~L~C~~~~-p~---~~i~W~k~~~   34 (89)
T cd04979           2 EEKVVTVVEGNSVFLECSPKS-NL---ASVVWLFQGG   34 (89)
T ss_pred             cceEEEEECCCcEEEEEeCCC-CC---ceEEEEECCc
Confidence            567889999999999999876 33   4799999965

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.64  E-value=0.00038  Score=46.07  Aligned_cols=67  Identities=21%  Similarity=0.445  Sum_probs=41.7

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEe--e--eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVD--M--TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~--~--~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |+.+.|.|.+.+  +.|.|.|+|+.+++ .+...  .  .....+.+.+.  ..|.+..-...+. ..++|.|.|..
T Consensus        14 ~~~~~~~C~s~~--~~P~~~i~W~~~~~-~~~~~~~~~~~~~~~~~~~~~--S~l~~~~~~~~~~-~~~~C~~~~~~   84 (89)
T PF08205_consen   14 GEEVTLTCSSSG--GYPPPQITWYLDGG-PVVASNTTQSSSPDNGLFTVS--STLTLTPTREDHG-KTLTCRASHPA   84 (89)
T ss_dssp             TEEEEEEEEEEE--EBS-EEEEEEETTC-EECEEEEEEEEETTTTTEEEE--EEEEEETTGGGTT-EEEEEEEEETT
T ss_pred             ceEEEEEEEeCC--eECCeEEEEEECCC-ceeeeeeeeeeccCCCcceEE--EEEEEEcChHHCC-eEEEEEEECCc
Confidence            569999999865  57999999999984 43110  0  01122223222  2466655444454 79999999986

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.62  E-value=0.00029  Score=45.50  Aligned_cols=65  Identities=23%  Similarity=0.500  Sum_probs=39.7

Q ss_pred             cEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         82 SAVLKCHIPSFVADYV-AVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        82 ~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .++|.|.+.++.  |. ..++|+||+ ..+....     ..+.++.|.+.  ..|.|......+. ..|+|.+.+..
T Consensus         1 ~~~L~C~a~gf~--P~~i~v~W~k~g-~~~~~~~~~~~~~~~~~gt~~~~--s~L~v~~~~~~~~-~~~tC~V~H~~   71 (75)
T smart00407        1 KATLVCLVSGFY--PPDITVTWLRNG-QEVTSGVSTTDPLKNSDGTYFLS--SYLTVSASTWESG-DTYTCQVTHEG   71 (75)
T ss_pred             CeEEEEEEEeEe--CCCCEEEEEECC-EECCCCEEECceEECCCCCEEEE--EEEEEccccCCCC-CEEEEEEEEcC
Confidence            378999998762  44 478999997 4432111     00122333321  2466666566676 89999998864

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.61  E-value=0.00042  Score=46.66  Aligned_cols=66  Identities=30%  Similarity=0.532  Sum_probs=39.9

Q ss_pred             CCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeeeecCCceEEEccCCeEE---EeecCcCCCCcceEEEeeecC
Q psy12724         80 GNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMTESTDGKYLVLPSGELH---IRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~---I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |+.+.|.|.+.++.  |.+ .++|+|++ ..+....   .........+|...   .-.+..+|. +.|+|.+.+..
T Consensus        14 ~~~~~L~C~a~gF~--P~~i~v~W~~~g-~~~~~~~---~~~~~~~~~d~ty~~~s~l~v~~~~~-~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFY--PRDIEVTWLRDG-EDSVDDV---ESGEILPNGDGTYQLWVTLEVPPEDK-ARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEe--CCCcEEEEEECC-EECcccc---cccceEECCCCeEEEEEEEEECCCCC-CEEEEEEEeCC
Confidence            78899999998762  443 78999997 3221110   11122223344322   223445587 99999999875

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=97.60  E-value=0.00013  Score=47.37  Aligned_cols=25  Identities=20%  Similarity=0.530  Sum_probs=21.6

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      |+++.|.|.+.+.|.   |.+.|+++++
T Consensus         1 G~~v~l~C~~~g~P~---p~v~W~~~~~   25 (78)
T cd05743           1 GETVEFTCVATGVPT---PIINWRLNWG   25 (78)
T ss_pred             CCEEEEEEEEEEecC---CEEEEEECCe
Confidence            789999999999875   4899999865

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=97.59  E-value=0.00012  Score=47.30  Aligned_cols=30  Identities=13%  Similarity=0.236  Sum_probs=24.6

Q ss_pred             EEEeCCcEEEEeecCCCCCCcceeeEEeeCCCc
Q psy12724         21 FVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGG   53 (167)
Q Consensus        21 ~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~   53 (167)
                      .+..|+++.|.|.+.+.|.+   .+.|+|++..
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p---~i~W~k~~~~   34 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRP---DITWLKDNKP   34 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCC---cEEEEECCcC
Confidence            45679999999999988754   6999998654

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=97.56  E-value=0.00015  Score=46.90  Aligned_cols=22  Identities=9%  Similarity=0.460  Sum_probs=18.4

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +.|+|.+.+.|.|   .|.|.|++.
T Consensus         1 v~L~C~v~G~P~P---~v~W~k~~~   22 (75)
T cd05744           1 VRLECRVSAIPPP---QIFWKKNNE   22 (75)
T ss_pred             CEEEEEEeecCCC---eEEEEECCE
Confidence            4799999999864   799999853

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=97.54  E-value=0.00012  Score=46.68  Aligned_cols=45  Identities=16%  Similarity=0.309  Sum_probs=30.3

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCCceeeecCC------ceE--------EEeeeEEEecCeE
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ------DFV--------VSQSYTVNIMDEH   76 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~------~~v--------~~g~y~c~~~~~~   76 (167)
                      +.|+|.+.|.|.|   .+.|+|+++.. ..+..      ..+        ..|.|+|.+.|..
T Consensus         1 ~~L~C~~~G~P~P---~v~W~k~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   59 (71)
T cd05876           1 LVLECIAEGLPTP---EVHWDRIDGPL-SPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSE   59 (71)
T ss_pred             CEEEEEeeEecCC---eEEEEECCcCC-CCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCC
Confidence            3699999998864   89999987643 22111      111        2689999887654

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.50  E-value=0.0017  Score=45.46  Aligned_cols=71  Identities=21%  Similarity=0.381  Sum_probs=42.2

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEee---eecCC-ceEEEccCCeEEEeecCcCCCCc-ceEEEe
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVDM---TESTD-GKYLVLPSGELHIRDVGPEDGYK-SYQCRT  148 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~---~~~~~-~r~~~~~~g~L~I~~v~~~D~~G-~Y~C~a  148 (167)
                      .....|+.++|.|.+.++  .|. -.++|+||+ ..+....   ....+ +.|.+.  ..|.+.. ...|. | .|+|.+
T Consensus        16 ~~~~~g~~~tL~C~a~gF--~P~~i~v~W~kng-~~~~~~~~~~~p~~d~~ty~~~--S~L~~~~-~~~d~-~~~ytC~V   88 (111)
T cd05772          16 GRANPGQSVNFTCSAHGF--SPRDITVKWLKNG-NELSAEQPNITPEGDSVSYNVT--STVQVKL-TEDDV-HSQVTCEV   88 (111)
T ss_pred             hccCCCCCEEEEEEEeeE--eCCCCEEEEEECC-EECcccccceeeCCCCCcEEEE--EEEEEEC-ccccc-cCceEEEE
Confidence            344578899999999876  243 478999997 4542110   00111 123321  2355553 44554 5 499999


Q ss_pred             eecC
Q psy12724        149 KHRL  152 (167)
Q Consensus       149 ~n~~  152 (167)
                      .+..
T Consensus        89 ~H~~   92 (111)
T cd05772          89 QHRT   92 (111)
T ss_pred             EeCC
Confidence            9975

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=97.45  E-value=0.00055  Score=44.17  Aligned_cols=24  Identities=21%  Similarity=0.588  Sum_probs=20.6

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      |+++.|.|.+.+.|.+   .+.|+|+.
T Consensus         1 G~~v~l~C~~~g~P~p---~v~W~k~~   24 (81)
T cd05765           1 GETASFHCDVTGRPPP---EITWEKQV   24 (81)
T ss_pred             CCcEEEEeeccccCCC---cEEEEecC
Confidence            7899999999988764   79999973

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.45  E-value=0.0013  Score=44.86  Aligned_cols=66  Identities=26%  Similarity=0.359  Sum_probs=41.5

Q ss_pred             cEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         82 SAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        82 ~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..++.|.+.+  +.|.+.|+|+++..........+..++.+.+.  ..|.+..-...|. -.|+|+++|..
T Consensus        17 ~~va~C~s~~--gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~--S~l~~~P~~~d~G-k~ltC~v~h~a   82 (95)
T cd07703          17 VPVAKCVSAN--GRPPARISWSSTLGGNANTTSKENGDGTVTVT--SEYSLVPTPEANG-KEVTCKVEHET   82 (95)
T ss_pred             cEEEEEEcCC--CCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEE--EEEEEecCHHHCC-CEEEEEEeCcc
Confidence            4678999876  67999999999842111111001123334332  3577766666666 79999999975

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=97.44  E-value=0.0002  Score=46.03  Aligned_cols=22  Identities=14%  Similarity=0.211  Sum_probs=18.3

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      |.|.|.+.|.|.+   .|.|+|++.
T Consensus         1 a~l~C~~~G~P~p---~v~W~k~~~   22 (74)
T cd05738           1 ATMLCAASGNPDP---EITWFKDFL   22 (74)
T ss_pred             CEEEEEEeEecCC---EEEEEECCE
Confidence            5799999998864   899999853

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.41  E-value=0.00063  Score=43.05  Aligned_cols=54  Identities=9%  Similarity=0.241  Sum_probs=36.2

Q ss_pred             EEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        77 v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      -+.|.+|+|.|...+     .. |.|.+|+ ..+.       +      .+..+...|-. ++. |.|+|.+.+..
T Consensus         4 sisGTtVtlTCP~~~-----~~-i~W~~n~-~~~~-------g------~~~~~~~~~~~-e~~-G~Y~C~~~~~~   57 (65)
T cd07692           4 SISGTTVTVTCPLSG-----DD-IKWKKND-QVSQ-------G------SDEKYLSLNHF-SSS-GYYHCTADNAN   57 (65)
T ss_pred             EEeccEEEEECCCCC-----CC-ceEEeCC-ccCC-------C------CCceEEeeccC-CCC-ceEEEEeCCCc
Confidence            467999999998542     22 8999997 3331       1      12234444555 888 99999997653

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>KOG3515|consensus

Probab=97.39  E-value=0.00063  Score=61.36  Aligned_cols=127  Identities=12%  Similarity=0.152  Sum_probs=78.7

Q ss_pred             EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceee------------ecCCceEEEeeeEEEecC------------
Q psy12724         19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ------------IDNQDFVVSQSYTVNIMD------------   74 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~------------~~~~~~v~~g~y~c~~~~------------   74 (167)
                      +.-+..|+.+.|.|.+.+.|++  +.+.|++.+...-.            .+..+ -.-+.|.|++.+            
T Consensus        16 ~~~~~~g~~v~l~C~v~~~pp~--~~~eW~h~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~c~a~ns~~~~~~~~~~l   92 (741)
T KOG3515|consen   16 TVGLRLGEDVPLPCRVNSNPPE--IDVEWYHSTSGEHGRYATIADPTLVTTGDVR-DTVAELNCRAFNSVGMPSRCPMIL   92 (741)
T ss_pred             ChhhccCCcceeeeecCCCCCC--cceEEEecCcccccccccccCCceeeecchh-hhhhhhhhhhcccccCceecceee
Confidence            3467899999999999988865  68999988643220            00000 002334443311            


Q ss_pred             --------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeee----c--CCceEEEccCCeEEEee
Q psy12724         75 --------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTE----S--TDGKYLVLPSGELHIRD  134 (167)
Q Consensus        75 --------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~----~--~~~r~~~~~~g~L~I~~  134 (167)
                                    .....+..+.+.|.+... +.|.+.+.|..+. ........+    .  ..+.+. .....|++..
T Consensus        93 ~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~-~~P~~nlrW~~n~-r~e~~~~~~~~~~~~~a~gss~-t~~s~l~~~v  169 (741)
T KOG3515|consen   93 DVDYPPACLPELGEIFQVDKGVVQIICSAKVA-GRPNPNLRWGFNN-RAELNAVNQRGRVGAGALGSSY-TEPSLLKQTV  169 (741)
T ss_pred             ccccCccccccccchhhhcCCeEEEEEeecCC-CCCCcceeeeecc-EEeecccCCcccccccccCcee-ccccceeeEE
Confidence                          123468889999966433 6789999999886 332211000    0  001111 1234589999


Q ss_pred             cCcCCCCcceEEEeeecC
Q psy12724        135 VGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       135 v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+.+|. |+|+|.|.|..
T Consensus       170 ~Rka~~-g~~tC~A~nr~  186 (741)
T KOG3515|consen  170 SRKADN-GNYTCPANNRN  186 (741)
T ss_pred             EEecCC-ceeEccccccc
Confidence            999998 99999999965

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=97.38  E-value=0.00069  Score=47.02  Aligned_cols=25  Identities=16%  Similarity=0.307  Sum_probs=21.0

Q ss_pred             eCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         24 KGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      .|+++.|.|.|.+.|.   +.++|.|++
T Consensus        22 ~g~~v~L~C~a~G~P~---p~i~W~k~g   46 (109)
T cd05773          22 GSSDANLVCQAQGVPR---VQFRWAKNG   46 (109)
T ss_pred             CCCEEEEEEECcccCC---CEEEEEECC
Confidence            4589999999998875   479999974

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=97.37  E-value=0.0008  Score=46.10  Aligned_cols=35  Identities=20%  Similarity=0.394  Sum_probs=27.6

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      ....+.+.+|+++.|+|.+.+.|.+  ..|.|...+.
T Consensus         7 ~~~s~~~~~G~~~~L~C~~~s~P~P--~~i~W~w~~~   41 (98)
T cd05898           7 SEQVQYAVRGERGKVKCFIGSTPPP--DRIAWAWKEN   41 (98)
T ss_pred             cCceEEEeCCCcEEEEEEEccCCCC--cEEEEEEccc
Confidence            4456789999999999999888875  3578876643

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=97.35  E-value=0.00041  Score=44.89  Aligned_cols=22  Identities=9%  Similarity=0.409  Sum_probs=18.0

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +.|.|.+.+.|.+   .++|+|++.
T Consensus         1 v~L~C~~~g~P~p---~v~W~k~g~   22 (77)
T cd05760           1 VTLRCHIDGHPRP---TYQWFRDGT   22 (77)
T ss_pred             CEEEEEeeecCCC---cEEEEECCE
Confidence            4799999998764   799999854

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.34  E-value=0.0025  Score=43.34  Aligned_cols=67  Identities=22%  Similarity=0.321  Sum_probs=40.3

Q ss_pred             CcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         81 NSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        81 ~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ....+.|.+.+  |.|.+.|+|+++.............++.+.+.  ..|.+..-...|. -.|+|.+.|..
T Consensus        16 ~~~va~C~s~~--gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~--S~l~~~p~~~d~G-~~~tC~v~h~~   82 (95)
T cd05719          16 PVTVATCVSAN--GKPPATISWETTLGGEAETQSKENPNGTVTVT--SEYRLVPSREANG-KELTCVVSHPT   82 (95)
T ss_pred             ccEEEEEECCC--CcCCCEEEEEeCCCCcceeEeecCCCCCEEEE--EEEEEecCHHHCC-CEEEEEEeCcc
Confidence            34667999865  67999999999721111111000112223322  2566765556665 69999999976

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=97.34  E-value=0.00025  Score=44.81  Aligned_cols=44  Identities=9%  Similarity=0.221  Sum_probs=28.7

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCCceeeecCC------ceE--------EEeeeEEEecCe
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ------DFV--------VSQSYTVNIMDE   75 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~------~~v--------~~g~y~c~~~~~   75 (167)
                      +.|.|.+.+.|.+   .++|.|++. .+.....      ..+        ..|.|+|.+.|.
T Consensus         1 v~L~C~~~g~P~p---~i~W~k~g~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   58 (69)
T cd05746           1 VQIPCSAQGDPEP---TITWNKDGV-QVTESGKFHISPEGYLAIRDVGVADQGRYECVARNT   58 (69)
T ss_pred             CEeEecceEeCCC---EEEEEECCE-ECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECC
Confidence            4699999998864   799999753 3432111      011        268888888664

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=97.33  E-value=0.0005  Score=43.28  Aligned_cols=44  Identities=20%  Similarity=0.299  Sum_probs=28.6

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCCceeeec-------CCceE------EEeeeEEEecCe
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDGGQYQID-------NQDFV------VSQSYTVNIMDE   75 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~-------~~~~v------~~g~y~c~~~~~   75 (167)
                      +.|+|.+.+.|.+   .+.|+|+++. +...       +.+.+      .+|.|+|.+.|.
T Consensus         1 v~l~C~~~g~P~p---~v~W~k~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   57 (69)
T cd05725           1 VEFQCEVGGDPVP---TVLWRKEDGE-LPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENM   57 (69)
T ss_pred             CEEEEECccCCCC---EEEEEECCcc-CCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcC
Confidence            4799999998764   7999998653 2211       11111      268888888664

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=97.33  E-value=0.00053  Score=43.73  Aligned_cols=23  Identities=9%  Similarity=0.300  Sum_probs=19.1

Q ss_pred             cEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         27 AAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        27 ~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      ++.|.|.+.|.|.+   .+.|+|++.
T Consensus         1 ~~~l~c~~~G~P~p---~v~W~k~g~   23 (74)
T cd05748           1 SVRLEVPISGRPTP---TVTWSKDGK   23 (74)
T ss_pred             CEEEEeeEeeeCCC---eEEEEECCE
Confidence            46899999999864   799999854

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.32  E-value=0.0014  Score=44.39  Aligned_cols=37  Identities=16%  Similarity=0.380  Sum_probs=30.1

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCcee
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQY   55 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~   55 (167)
                      .++++.+.+|+++.|+|.+.+.+.   +.+.|++.++..+
T Consensus         3 ~~~~v~v~eG~~v~L~C~~~~~p~---~~v~W~~~~~~~l   39 (95)
T cd07701           3 LTQNVTVVEGGTANLTCRVDQNDN---TSLQWSNPAQQTL   39 (95)
T ss_pred             ccceEEEecCCcEEEEEEEecCCc---eEEEEeCCCCeEE
Confidence            567899999999999999998875   4799997654433

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.32  E-value=0.0008  Score=44.36  Aligned_cols=56  Identities=18%  Similarity=0.115  Sum_probs=36.3

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee-cCC--ceE------EEeeeEEEecC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI-DNQ--DFV------VSQSYTVNIMD   74 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~-~~~--~~v------~~g~y~c~~~~   74 (167)
                      ++....|.+|+++.|+|.+.+....  +.+.|+|++. .+.. +..  ..+      .+|.|.|.+.+
T Consensus         5 ~~p~~~V~~G~~vtL~C~~~~~~~~--~~~~w~k~g~-~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~   69 (83)
T cd05753           5 QVPSRVVFEGEPLVLRCHGWKNKPV--YKVTYYRDGK-AKKYSHSNSNLSIPQATLSDSGSYHCSGII   69 (83)
T ss_pred             ECCcceecCCCCEEEEeeCCCCCcc--eEEEEEECCe-EccccCCCceEEECccCHHHCEEEEEEEEe
Confidence            3445679999999999998653322  4699999864 3321 111  111      37999998753

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=97.31  E-value=0.0011  Score=44.15  Aligned_cols=58  Identities=16%  Similarity=0.184  Sum_probs=36.2

Q ss_pred             CcEEEEeecCCCCCCcceeeEEeeCCCceee--ecCCc------------eE-------EEeeeEEEecCeEEEeCCcEE
Q psy12724         26 NAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ--IDNQD------------FV-------VSQSYTVNIMDEHVLKGNSAV   84 (167)
Q Consensus        26 ~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~--~~~~~------------~v-------~~g~y~c~~~~~~v~~G~~a~   84 (167)
                      +++.|+|.|..++... +.+.|++++. .|.  .++.+            .+       .+|.|+|.+++..-..-.+|.
T Consensus         1 ~~~~l~C~v~~d~~l~-~~~~W~~dg~-~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~   78 (85)
T cd05853           1 ESIVLPCQVSHDHSLD-IVFTWSFNGH-LIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAAD   78 (85)
T ss_pred             CcEEEEEEeccCCCCC-cEEEEEECCE-ECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEE
Confidence            4789999998866432 4699999954 443  11111            11       169999999875433334444


Q ss_pred             E
Q psy12724         85 L   85 (167)
Q Consensus        85 l   85 (167)
                      |
T Consensus        79 L   79 (85)
T cd05853          79 L   79 (85)
T ss_pred             E
Confidence            4

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.30  E-value=0.0023  Score=43.33  Aligned_cols=66  Identities=23%  Similarity=0.412  Sum_probs=40.1

Q ss_pred             EeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         78 LKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        78 ~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      ..|+.++|.|.+.++.  |.. .++|+||+ ..+....     .++.++.|.+.  ..|.+   ..++. ..|+|.+.+.
T Consensus        12 ~~~~~~~L~C~~~gFy--P~~i~v~W~~~g-~~~~~~~~~~~~~~~~dgTy~~~--s~L~~---~~~~~-~~ysC~V~H~   82 (94)
T cd05766          12 SLSHPHLLVCHVWGFY--PPEITVKWFKNG-QEETEGVVSTELIPNGDWTYQIL--VMLET---TPSRG-DTYTCVVEHS   82 (94)
T ss_pred             cCCCCeEEEEEEeeec--CCCCEEEEEECC-eecCCCceecceEECCCCcEEEE--EEEEE---cCCCC-CEEEEEEEeC
Confidence            4689999999998863  433 67999998 4442210     01122233221  12333   34566 7999999987


Q ss_pred             C
Q psy12724        152 L  152 (167)
Q Consensus       152 ~  152 (167)
                      .
T Consensus        83 ~   83 (94)
T cd05766          83 S   83 (94)
T ss_pred             C
Confidence            5

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.30  E-value=0.0014  Score=44.51  Aligned_cols=68  Identities=16%  Similarity=0.323  Sum_probs=40.6

Q ss_pred             EeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEe---ecCcCCCCcceEEEeeecC
Q psy12724         78 LKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIR---DVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        78 ~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~---~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..|+.++|.|.|.++.. +.-.++|+||| ..+. ..   .........||+..+.   .+.+++. ..|+|.+.+..
T Consensus        13 ~~g~~~~L~C~a~gFyP-~~i~v~W~~dg-~~~~-~~---~~~~~~p~~d~tyq~~s~l~~~~~~~-~~ysC~V~H~~   83 (93)
T cd05770          13 ENGKPNVLNCYVTGFHP-PDIEIRLLKNG-VKIP-KV---EQSDLSFSKDWTFYLLKSTEFTPTKG-DEYACRVRHNS   83 (93)
T ss_pred             cCCCceEEEEEEEEEeC-CCCEEEEEECC-EECC-Cc---EECcEEECCCCCEEEEEEEEECCCCC-CeEEEEEEECC
Confidence            34777899999988622 23467999998 4542 21   0111222234433322   3356777 89999999864

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>PHA03376 BARF1; Provisional

Probab=97.21  E-value=0.0059  Score=46.74  Aligned_cols=128  Identities=15%  Similarity=0.155  Sum_probs=71.5

Q ss_pred             EEEEEeCCcEEEEeecCCCCCCcceeeEEeeC----CCceeeecCC-----------c----------eE--------EE
Q psy12724         19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT----DGGQYQIDNQ-----------D----------FV--------VS   65 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~----~~~~~~~~~~-----------~----------~v--------~~   65 (167)
                      -+++..|+.|.|.|.-.......-..|.|+|.    +...+..++.           +          .+        ..
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            57788999999999987433323457999994    2222222111           1          01        16


Q ss_pred             eeeEEEecC----------e-EEE--------------eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCc
Q psy12724         66 QSYTVNIMD----------E-HVL--------------KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDG  120 (167)
Q Consensus        66 g~y~c~~~~----------~-~v~--------------~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~  120 (167)
                      |.|.|..++          . .|.              .-+.-.+.|..-++   |.|-++|+-+++..-.|..   ..+
T Consensus       100 GtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggf---P~P~~~Wle~~~~~~~~~~---~~~  173 (221)
T PHA03376        100 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAF---PHPHVQWLMPEGVEPAPTA---ANG  173 (221)
T ss_pred             ceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCc---CCchheeccccCCCCCCcc---ccC
Confidence            999998743          0 111              13445788996554   9999999988753322221   233


Q ss_pred             eEEEccCCeEEEe-ecCcCCC-CcceEEEeeecC
Q psy12724        121 KYLVLPSGELHIR-DVGPEDG-YKSYQCRTKHRL  152 (167)
Q Consensus       121 r~~~~~~g~L~I~-~v~~~D~-~G~Y~C~a~n~~  152 (167)
                      ......+|+|.+. .+..... .---+|+..|.-
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (221)
T PHA03376        174 GVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDK  207 (221)
T ss_pred             ceeecCCCcEEEEEEeecCCCccCceEEeccCch
Confidence            3333456665432 2222111 024577777753

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.21  E-value=0.0011  Score=45.29  Aligned_cols=69  Identities=23%  Similarity=0.368  Sum_probs=42.3

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .++.+.|.|.+.++.. +.-.++|+||+ ..+....     ..+.++.|.+.  ..|.+..-...+. ..|+|.+.+..
T Consensus        16 ~~~~~~L~C~~~gfyP-~~i~v~W~~~g-~~~~~~~~~~~~~~~~dgty~~~--s~L~v~~~~w~~~-~~~sC~V~H~~   89 (100)
T cd07699          16 KSGKATLVCLINDFYP-GFATVQWKVDG-ATVSSGVQTSTTEQQSDNTYSLS--SYLTLTKSDWNKH-KVYTCEVTHEG   89 (100)
T ss_pred             cCCCcEEEEEEEeEEC-CCCEEEEEECC-EECcccEeccccEECCCCCEEEE--EEEEEcHHHhCCC-CeEEEEEEecC
Confidence            5788999999987632 24578999997 4542111     00112333331  2455555554456 79999999875

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=97.17  E-value=0.00078  Score=43.72  Aligned_cols=22  Identities=18%  Similarity=0.395  Sum_probs=18.2

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +.|.|.|.|.|.   |.|+|+|++.
T Consensus         1 ~~l~C~a~G~P~---P~i~W~k~g~   22 (77)
T cd05874           1 IVIQCEAKGKPP---PSFSWTRNGT   22 (77)
T ss_pred             CEEEeeCcccCC---CeEEEEECCe
Confidence            369999999976   4899999854

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=97.16  E-value=0.0016  Score=43.48  Aligned_cols=53  Identities=19%  Similarity=0.242  Sum_probs=37.6

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC------ceE-------EEeeeEEEec
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ------DFV-------VSQSYTVNIM   73 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~------~~v-------~~g~y~c~~~   73 (167)
                      ..++.+|.+|++++|+|...+..+    .+.|++++. .+.++..      ..+       .+|.|.|...
T Consensus         2 ~~~~~tv~~g~~v~L~C~~~s~~A----~v~W~~ng~-~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872           2 PVKNRTVAPGADVVLPCQLRSNLA----SPVWLFNGT-PLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             cceEEEEecCCCEEEECCCCCCCc----cEEEEECCc-ccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence            357889999999999999987654    599999855 3433211      111       2789999864

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=97.16  E-value=0.00059  Score=42.86  Aligned_cols=44  Identities=14%  Similarity=0.340  Sum_probs=29.1

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCCceeeecC------CceE--------EEeeeEEEecCe
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN------QDFV--------VSQSYTVNIMDE   75 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~------~~~v--------~~g~y~c~~~~~   75 (167)
                      +.|+|.+.+.|.+   .+.|.|+++. +..+.      ...+        ..|.|+|.+.|.
T Consensus         1 v~l~C~~~g~P~p---~v~W~k~~~~-~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   58 (71)
T cd05731           1 LLLECIAEGLPTP---EISWIKIGGE-LPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNS   58 (71)
T ss_pred             CEEEEEeeEecCC---eEEEEECCeE-CCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeC
Confidence            4699999998864   7999998753 22111      0111        268899988764

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.15  E-value=0.00085  Score=43.40  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=18.0

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +.|.|.|.|.|.+   .++|+|++.
T Consensus         1 i~l~C~~~G~P~P---~v~W~k~g~   22 (77)
T cd05733           1 IVIKCEAKGNPPP---TFSWTRNGT   22 (77)
T ss_pred             CEEEeeCcccCCC---eEEEEECCe
Confidence            4799999998764   899999854

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.13  E-value=0.0021  Score=43.63  Aligned_cols=66  Identities=21%  Similarity=0.421  Sum_probs=39.3

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .|+.++|.|.+.++.. +.-.++|+||| ..+....     .++.++.|.+.  ..|.|.   +++. ..|+|.+.+..
T Consensus        14 ~~~~~tL~C~a~gFyP-~~I~v~W~~~g-~~~~~~~~~~~~~~~~Dgty~~~--s~L~v~---~~~~-~~ytC~V~H~~   84 (94)
T cd05767          14 LGEPNTLICFVDNFFP-PVLNVTWLKNG-VPVTDGVSETRYYPRQDLSFQKF--SYLNFT---PEEG-DIYSCIVEHWG   84 (94)
T ss_pred             CCCCeEEEEEEEEEEC-CcCEEEEEECC-eEccCceEEeeeEeCCCCcEEEE--EEEEEE---CCCC-CeEEEEEEeCC
Confidence            4666899999988632 22367999997 4442110     01223333332  235444   3565 79999999875

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=97.11  E-value=0.00094  Score=43.35  Aligned_cols=22  Identities=9%  Similarity=0.353  Sum_probs=18.2

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +.|+|.+.|.|.+   .++|+|++.
T Consensus         1 ~~l~C~~~G~P~P---~v~W~k~g~   22 (77)
T cd05875           1 IIIECEAKGNPVP---TFQWTRNGK   22 (77)
T ss_pred             CEEEEeccccCCC---EEEEEECCE
Confidence            3799999999864   899999853

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=97.09  E-value=0.00085  Score=42.98  Aligned_cols=22  Identities=14%  Similarity=0.392  Sum_probs=18.1

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      |.|.|.+.+.|.+   .+.|+|++.
T Consensus         1 ~~L~C~v~g~P~p---~v~W~k~~~   22 (76)
T cd05736           1 ASLRCHAEGIPLP---RLTWLKNGM   22 (76)
T ss_pred             CEeEeEeeecCCC---EEEEEECCE
Confidence            5799999998764   799999854

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=97.07  E-value=0.00088  Score=53.35  Aligned_cols=50  Identities=16%  Similarity=0.284  Sum_probs=41.5

Q ss_pred             cceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         96 YVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        96 p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .-|...|..+++..+.      +.++..+.+.|.|.+.+.+.+|+ |.|+|..+-+.
T Consensus        11 iDP~y~W~GP~g~~l~------gn~~~nIT~TG~L~~~~F~esmS-G~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLS------GNSYVNITETGKLMFKNFQESMS-GSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccC------CCCeEEEccCceEEeeccccccC-CceEEEEEEEe
Confidence            3467899988765552      45678888999999999999999 99999988765

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=97.04  E-value=0.0023  Score=41.20  Aligned_cols=30  Identities=17%  Similarity=0.324  Sum_probs=24.4

Q ss_pred             EEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         20 VFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        20 ~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      ..+..|+++.|.|.+.+.+.   +.+.|.|++.
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~---~~v~W~k~~~   33 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPR---PTITWLKDGK   33 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCC---CeEEEEECCE
Confidence            34668999999999998765   4799999854

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=97.04  E-value=0.0023  Score=40.55  Aligned_cols=36  Identities=14%  Similarity=0.291  Sum_probs=27.4

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceee
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ   56 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~   56 (167)
                      ++...+.+|+++.|.|.+.+.+.   +.+.|.+++ ..+.
T Consensus         6 ~~~~~v~~g~~~~l~C~~~~~p~---~~~~w~~~~-~~~~   41 (80)
T PF13895_consen    6 SSPQSVEEGDSVTLTCSVSGNPP---PQVQWYKNG-SPIN   41 (80)
T ss_dssp             EESSEEETTSEEEEEEEEESSSS---SEEEEEETT-EEEE
T ss_pred             ccceEEeCCCcEEEEEEEEcccc---eeeeeeeee-eeee
Confidence            33466899999999999997655   369999975 3444

...

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=97.01  E-value=0.0017  Score=38.64  Aligned_cols=26  Identities=12%  Similarity=0.360  Sum_probs=20.8

Q ss_pred             eCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         24 KGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +|+++.|.|.+.+.+.   +.+.|.+++.
T Consensus         1 ~g~~~~l~C~~~~~~~---~~v~W~~~~~   26 (63)
T smart00408        1 EGQSVTLTCPAEGDPV---PNITWLKDGK   26 (63)
T ss_pred             CCceEEEEeeCccCCC---CeEEEEECCE
Confidence            5899999999877664   3799999753

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=97.00  E-value=0.0018  Score=42.77  Aligned_cols=26  Identities=12%  Similarity=0.202  Sum_probs=20.4

Q ss_pred             CcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         26 NAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        26 ~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +++.|.|.|.+.|.+. ..+.|.|++.
T Consensus         1 ~~~~L~C~a~g~P~p~-~~v~W~~~g~   26 (85)
T cd05854           1 ENLTLQCHASHDPTMD-LTFTWSLDDF   26 (85)
T ss_pred             CcEEEEEEEecCCCCC-eEEEEEECCe
Confidence            4789999999998752 2589999853

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=96.99  E-value=0.0011  Score=42.78  Aligned_cols=42  Identities=12%  Similarity=0.067  Sum_probs=28.4

Q ss_pred             EEEeecCCCCCCcceeeEEeeCCCceeeecCCc------eE--------EEeeeEEEecC
Q psy12724         29 VFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD------FV--------VSQSYTVNIMD   74 (167)
Q Consensus        29 ~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~------~v--------~~g~y~c~~~~   74 (167)
                      .|.|.+.|.|.|   .+.|.|++. .+..+..+      .+        .+|.|+|.+.+
T Consensus         2 ~l~c~v~g~P~P---~v~W~kdg~-~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~   57 (72)
T cd07702           2 RLTPKVKAFPAP---EVIWLKDGL-PAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGI   57 (72)
T ss_pred             eEEeeEEEcCCC---eEEEEECCE-ECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEc
Confidence            689999999865   799999953 33322111      11        16889988765

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=96.99  E-value=0.0022  Score=43.51  Aligned_cols=31  Identities=23%  Similarity=0.344  Sum_probs=24.7

Q ss_pred             EEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCc
Q psy12724         20 VFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGG   53 (167)
Q Consensus        20 ~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~   53 (167)
                      +.+.+|+++.|.|.+++.+.   +.+.|++++.+
T Consensus         2 v~~~~G~~VtL~C~~s~~~~---~~i~W~~~~~k   32 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKS---IQFHWKNSNQI   32 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCC---cEEEEEECCcE
Confidence            56789999999999987664   47999976533

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=96.99  E-value=0.0012  Score=42.63  Aligned_cols=22  Identities=14%  Similarity=0.635  Sum_probs=18.2

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +.|.|.+.+.|.+   .+.|+|+++
T Consensus         1 v~l~C~~~G~P~P---~v~W~~~~~   22 (79)
T cd05734           1 VTLNCSAEGYPPP---TIVWKHSKG   22 (79)
T ss_pred             CEeEeeCeEeCCC---EEEEEECCC
Confidence            5799999998864   799999754

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.98  E-value=0.0053  Score=41.77  Aligned_cols=72  Identities=18%  Similarity=0.339  Sum_probs=40.3

Q ss_pred             EEeCCcEEEEeeeCCc-cCCcceeEEEEeCCCeeeEEee---eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         77 VLKGNSAVLKCHIPSF-VADYVAVESWISDQGEELFVDM---TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        77 v~~G~~a~l~C~~~~~-~~~p~p~i~W~k~~~~~l~~~~---~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +..|+.++|.|.+.++ .. +.-.++|+||++..+....   .++.++.|.+.  ..|.+..-...+. -.|+|.+.+..
T Consensus        11 l~~~~~~tLtC~v~gf~yP-~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~--s~l~v~~~~w~~g-~~ysC~V~H~~   86 (96)
T cd07696          11 LLLTKSVKLTCLVTNLTSP-EGVNVTWTRGSGEPVKASIQPPESHNNATLSVT--STLNVSTDDWISG-DTFQCKVTHPD   86 (96)
T ss_pred             hccCCCeEEEEEEeCCCCC-CCcEEEEEECCeEeeeEEecccccCCCCCEEEE--EEEEeCHHHccCC-CcEEEEEECCC
Confidence            4468999999999876 22 2346799998743321110   00112223221  1344443333333 57999999875

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=96.97  E-value=0.0023  Score=41.90  Aligned_cols=26  Identities=12%  Similarity=0.280  Sum_probs=19.8

Q ss_pred             CcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         26 NAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        26 ~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +++.|.|.|.+.|.+.+ .+.|.|++.
T Consensus         1 e~~~L~C~~~g~P~p~i-~~~W~~~g~   26 (85)
T cd04970           1 ESITLQCHASHDPTLDL-TFTWSFNGV   26 (85)
T ss_pred             CcEEEEEEEecCCCCCe-EEEEEECCe
Confidence            57899999998876522 479999743

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=96.97  E-value=0.0029  Score=43.08  Aligned_cols=36  Identities=19%  Similarity=0.377  Sum_probs=29.3

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCcee
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQY   55 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~   55 (167)
                      .+++.+.+|++|.|.|.+.+....   .+.|++.+...+
T Consensus         4 ~~nvtv~~G~ta~L~C~v~~~~~~---~v~w~~~~~~~i   39 (95)
T cd05881           4 TEDVTVVEGEVAIISCRVKNNDDS---VIQLLNPNRQTI   39 (95)
T ss_pred             cCceEEcCCCcEEEEEEEccCCcc---EEEEEecCCcEE
Confidence            457899999999999999988754   589998875554

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>PHA02633 hypothetical protein; Provisional

Probab=96.92  E-value=0.0017  Score=40.61  Aligned_cols=36  Identities=19%  Similarity=0.205  Sum_probs=28.8

Q ss_pred             cCCeEEEeecCcCCCCcceEEEeeecC---cceEEEeeeC
Q psy12724        126 PSGELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSATK  162 (167)
Q Consensus       126 ~~g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~~~  162 (167)
                      .++.|-|-++..+|+ |.|.|..+|.-   ...+.|++..
T Consensus        16 ~~~nLwilpa~~sDS-GiYiC~~rn~t~c~~~si~l~V~~   54 (63)
T PHA02633         16 NCNNMLILNPTQSDS-GIYMCITKNETYSDMMKFDLCICL   54 (63)
T ss_pred             ccccEEEeccccccC-cEEEEEEcCCCeeEEEEEEEEEee
Confidence            356799999999999 99999999875   4455666644

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=96.90  E-value=0.0018  Score=41.29  Aligned_cols=44  Identities=11%  Similarity=0.285  Sum_probs=29.3

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCCceeeecC------CceE-------EEeeeEEEecCe
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN------QDFV-------VSQSYTVNIMDE   75 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~------~~~v-------~~g~y~c~~~~~   75 (167)
                      +.|.|.+.+.|.+   .+.|+|++ +.+..+.      ....       .+|.|+|.+.+.
T Consensus         1 ~~l~c~v~g~P~p---~v~W~k~g-~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~   57 (71)
T cd04976           1 VRLPVKVKAYPPP---EIQWYKNG-KLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNK   57 (71)
T ss_pred             CEEEeEEEEeCCC---EEEEEECC-EECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcC
Confidence            3689999998864   79999974 3443221      1111       279999988764

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=96.89  E-value=0.0014  Score=41.92  Aligned_cols=44  Identities=11%  Similarity=0.216  Sum_probs=30.0

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCCceeeecCC----ceE--------EEeeeEEEecCe
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ----DFV--------VSQSYTVNIMDE   75 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~----~~v--------~~g~y~c~~~~~   75 (167)
                      +.|.|.+.|.|.+   .++|+|++. .+..+..    ..+        ..|.|+|.+.|.
T Consensus         1 ~~~~c~v~G~P~P---~v~W~k~g~-~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~   56 (70)
T cd05864           1 VKIPVKYYGYPPP---EVKWYKNGQ-LIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNP   56 (70)
T ss_pred             CEEEeEEEEeCCC---EEEEEECCE-ECCCCCEEccCCEEEECcCCHHHCEEEEEEEEEC
Confidence            3689999999875   799999854 4433211    011        279999998765

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=96.86  E-value=0.005  Score=41.74  Aligned_cols=69  Identities=17%  Similarity=0.369  Sum_probs=40.7

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .++.+.|.|.+.++.. +.-.++|+||+ ..+....     ..+.++.|.+.  ..|.|..-...+. ..|+|.+.+..
T Consensus        13 ~~~~~~L~C~a~gFyP-~~I~vtW~~dg-~~~~~~~~~s~~~~~~~~Ty~~~--S~L~v~~~~w~~~-~~ytC~V~H~~   86 (94)
T cd05847          13 TSETIQLLCLISGYTP-GTIEVEWLVDG-QVATLVAASTAPQKEEGSTFSTT--SELNVTQEDWKSG-KTYTCKVTHQG   86 (94)
T ss_pred             CCCCEEEEEEEEeEEC-CCCEEEEEECC-EECcCceeecccEECCCCcEEEE--EEEEEchHHhcCC-CeEEEEEEECC
Confidence            4566999999988632 23467999997 4431110     00122233321  2455554444465 79999999875

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=96.77  E-value=0.0024  Score=39.18  Aligned_cols=28  Identities=14%  Similarity=0.437  Sum_probs=21.0

Q ss_pred             CCcEEEEeec-CCCCCCcceeeEEeeCCCcee
Q psy12724         25 GNAAVFKCNL-PSFVSDHLDVVSWADTDGGQY   55 (167)
Q Consensus        25 G~~~~l~C~a-~~~~~~~~~~i~W~k~~~~~~   55 (167)
                      |+++.|.|.+ .+.+.   +.++|.+++....
T Consensus         1 G~~v~L~C~~~~~~~~---~~~~W~~~~~~~~   29 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPP---TTVTWSKNGQSLP   29 (64)
T ss_dssp             TSEEEEEEEEEESSST---SEEEEEETTTTTS
T ss_pred             CCeEEEEeecCCCCCC---cEEEEEECCcccc
Confidence            8999999999 33333   4799999976543

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.75  E-value=0.0092  Score=40.81  Aligned_cols=72  Identities=18%  Similarity=0.219  Sum_probs=46.4

Q ss_pred             EEEeCCcEEE-EeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         76 HVLKGNSAVL-KCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        76 ~v~~G~~a~l-~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+..|+.+.+ .|.+.+  |.|.+.|+|+++..........+..++.+.+.  ..|.+..-+..|. -.++|++.+..
T Consensus        12 ~~~~g~~~~vA~C~sa~--gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~--S~~~l~p~r~d~G-~~vtC~V~H~a   84 (97)
T cd07704          12 LIDGGNGTTLAACCAAE--GRPAADVTWETNVYGTSESHSQEHPNGTTTVT--SEYIWVPSRHANG-HPLTCVVSHPA   84 (97)
T ss_pred             EeecCcceeEEEEEccC--CccCCEeEEeCCCCCccceeeecCCCCCEEEE--EEEEEEeCHHHCC-cEEEEEEeCcc
Confidence            3457888888 999865  67999999998742111100001123344443  2577766667776 79999999875

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.73  E-value=0.0066  Score=39.73  Aligned_cols=65  Identities=26%  Similarity=0.536  Sum_probs=40.8

Q ss_pred             eCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEe-----eeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVD-----MTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~-----~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .++.+.|.|.+.++.  |.. .++|++|+ ..+...     ...+.++.|.+.  ..|.|.   ..+. ..|+|.+.+..
T Consensus         7 ~~~~~~L~C~v~~f~--P~~i~v~W~~~~-~~~~~~~~~~~~~~~~dgty~~~--s~l~v~---~~~~-~~ysC~V~H~~   77 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFY--PKDITVTWLKNG-KEVTEGVETTPPPPNSDGTYSVT--SSLTVT---WNSG-DEYSCRVTHES   77 (83)
T ss_dssp             STSEEEEEEEEEEEB--SSTEEEEEEETT-EEETTTEEEEEEEEETTSEEEEE--EEEEEE---TTTT-GGEEEEEEETT
T ss_pred             CCCCEEEEEEEEEEE--CCCcEEEEEecc-ceeeeeeeecccccccccceeee--EEEEec---CCCC-CEEEEEEEECC
Confidence            388899999998763  433 68999997 443110     001134444432  246666   5555 78999999875

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=96.63  E-value=0.0029  Score=42.67  Aligned_cols=55  Identities=13%  Similarity=0.177  Sum_probs=35.5

Q ss_pred             EEEEEeCCcEEEEeecCCCCCC--cceeeEEeeCCCceeeecC------CceE-------EEeeeEEEecC
Q psy12724         19 DVFVIKGNAAVFKCNLPSFVSD--HLDVVSWADTDGGQYQIDN------QDFV-------VSQSYTVNIMD   74 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~~~~~~--~~~~i~W~k~~~~~~~~~~------~~~v-------~~g~y~c~~~~   74 (167)
                      ...+..|+++.|.|.+.+....  +-|.+.|+|++. .+..+.      ....       .+|.|+|.+.+
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~-~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n   73 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCK-LLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTF   73 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCE-ECCCCccEEecCCEEEEeeCChhhCEEEEEEEEe
Confidence            3568899999999998654321  235799999864 342211      1111       37899998864

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=96.63  E-value=0.012  Score=39.33  Aligned_cols=36  Identities=22%  Similarity=0.512  Sum_probs=28.0

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCcee
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQY   55 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~   55 (167)
                      .+++.+.+|+++.|+|.+.+.+.   +.+.|++.++..+
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~---~~v~W~~p~~~~~   39 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDN---SSLQWSNPNQQTL   39 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCC---ceEEEeCCCCcEE
Confidence            35788999999999999987654   4799997655443

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=96.62  E-value=0.01  Score=40.39  Aligned_cols=30  Identities=17%  Similarity=0.347  Sum_probs=21.6

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeee
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEEL  110 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l  110 (167)
                      .++.++|-|.|.++.. +.-.++|+||+ ..+
T Consensus        15 ~~~~~tL~C~a~gFyP-~~I~v~W~kng-~~~   44 (96)
T cd07697          15 KQGQGIYLCLLENFFP-DVIQVHWREGN-SPS   44 (96)
T ss_pred             cCCCEEEEEEEEEEeC-CCeEEEEEECC-EEC
Confidence            4677999999988632 23367999997 443

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=96.61  E-value=0.016  Score=38.81  Aligned_cols=30  Identities=17%  Similarity=0.283  Sum_probs=22.9

Q ss_pred             eEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         18 YDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        18 ~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      ..+.+.+|+++.|.|.+. .|.   |.++|+|++
T Consensus         4 ~~~~~~eG~~v~L~C~~~-~p~---p~v~Wykq~   33 (91)
T cd05871           4 KVVYGVENNSTFLECLPK-SPQ---ASVKWLFQR   33 (91)
T ss_pred             eEEEEecCCcEEEEEECC-CCC---ceEEEEEEC
Confidence            346789999999999963 443   579999853

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=96.58  E-value=0.0055  Score=38.75  Aligned_cols=21  Identities=29%  Similarity=0.528  Sum_probs=16.9

Q ss_pred             EEEeecCC-CCCCcceeeEEeeCCC
Q psy12724         29 VFKCNLPS-FVSDHLDVVSWADTDG   52 (167)
Q Consensus        29 ~l~C~a~~-~~~~~~~~i~W~k~~~   52 (167)
                      .|.|.+.+ .|.   |.+.|+|++.
T Consensus         2 ~l~C~~~g~~P~---p~~~W~k~g~   23 (75)
T cd05750           2 VLKCEATSEYPS---LRFKWFKDGK   23 (75)
T ss_pred             EEEEEccCCCCC---ceEEEEcCCe
Confidence            69999998 664   4899999754

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.55  E-value=0.0087  Score=43.06  Aligned_cols=69  Identities=17%  Similarity=0.362  Sum_probs=38.1

Q ss_pred             eCCcEEEEeeeCCccCC--cceeEEEEeCCCeeeEEeeeecCCceE--------EE--ccCC--eEEEeecCcCCCCcce
Q psy12724         79 KGNSAVLKCHIPSFVAD--YVAVESWISDQGEELFVDMTESTDGKY--------LV--LPSG--ELHIRDVGPEDGYKSY  144 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~--p~p~i~W~k~~~~~l~~~~~~~~~~r~--------~~--~~~g--~L~I~~v~~~D~~G~Y  144 (167)
                      =+++|.|||.+......  +.-.|+|..++ ..++...  ....+.        .+  +..|  +|.+...+.- . |+|
T Consensus        26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~-~~If~~d--g~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~-GnY  100 (130)
T PF08204_consen   26 CNDTVVIPCFVNNLEANNISEMYVKWKFKN-KDIFIFD--GTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-E-GNY  100 (130)
T ss_dssp             T-SEEEE--BBSS---SSGGGEEEEEEETT-EEEEEEE--TTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH---EEE
T ss_pred             cCCCEEEEeEeccccccccceEEEEEEECC-eEEEEEc--CccceecccCccccchhHhhCCCEEEEEcchhcc-c-cce
Confidence            48899999998642111  23458999987 4554321  111111        11  1233  5999887777 5 999


Q ss_pred             EEEeeecC
Q psy12724        145 QCRTKHRL  152 (167)
Q Consensus       145 ~C~a~n~~  152 (167)
                      +|.+....
T Consensus       101 TCeVt~~~  108 (130)
T PF08204_consen  101 TCEVTELS  108 (130)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEecC
Confidence            99997765

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.51  E-value=0.0091  Score=41.01  Aligned_cols=69  Identities=16%  Similarity=0.367  Sum_probs=40.5

Q ss_pred             EeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEee----e--ec--CCceEEEccCCeEEEeecCcCCCCcceEEEe
Q psy12724         78 LKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDM----T--ES--TDGKYLVLPSGELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        78 ~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~----~--~~--~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      ..|+.+.|.|.+.++.  |.. .++|+||+ ..+....    .  ++  .++.|.+.  ..|.|..-...+. ..|+|.+
T Consensus        14 ~~~~~~tL~C~a~gFy--P~~i~v~W~k~g-~~~~~~~~~~~~~~~~~~~dgTy~~~--s~L~v~~~~w~~~-~~ytC~V   87 (102)
T cd05768          14 SLQETATLTCLVKGFS--PSDIFVKWLQNG-QPLSKQKYVTTAPMQEPGGNESYFLY--SKLTVSAEDWNAG-DVFTCVV   87 (102)
T ss_pred             CcCCceEEEEEEeeEe--CCCCEEEEEECC-EECCcccccccCcccccCCCCeEEEE--EEEEEcHHHhcCC-CcEEEEe
Confidence            3578899999998862  433 57999997 4442110    0  00  01233322  2355544333455 6899999


Q ss_pred             eecC
Q psy12724        149 KHRL  152 (167)
Q Consensus       149 ~n~~  152 (167)
                      .+..
T Consensus        88 ~H~~   91 (102)
T cd05768          88 GHEA   91 (102)
T ss_pred             EeCC
Confidence            9875

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=96.49  E-value=0.0043  Score=40.73  Aligned_cols=20  Identities=5%  Similarity=0.185  Sum_probs=16.5

Q ss_pred             EEeecCCCCCCcceeeEEeeCCC
Q psy12724         30 FKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        30 l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +.|.+.|.|.|   .|+|+|++.
T Consensus         3 i~~~v~G~P~P---ti~W~kng~   22 (79)
T cd05855           3 IPFTVKGNPKP---TLQWFHEGA   22 (79)
T ss_pred             EEEEEeEeCCC---ceEEEECCE
Confidence            67899998864   899999953

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=96.45  E-value=0.0065  Score=39.67  Aligned_cols=27  Identities=15%  Similarity=0.357  Sum_probs=21.1

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      |+++.|.|.|.+.+.+ .+.+.|.+++.
T Consensus         1 Ge~~~L~C~~~g~~~~-~~~i~W~~~~~   27 (84)
T cd05742           1 GETLVLNCTVLTELNE-GVDFQWTYPGK   27 (84)
T ss_pred             CCeEEEEEEEEeCCCc-cEEEEEecCCc
Confidence            7899999999988432 35799987653

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>PHA02982 hypothetical protein; Provisional

Probab=96.36  E-value=0.013  Score=45.50  Aligned_cols=75  Identities=19%  Similarity=0.337  Sum_probs=49.9

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-----e------e-cCCceEEEc---cCCeEEEeecCcCC
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-----T------E-STDGKYLVL---PSGELHIRDVGPED  139 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-----~------~-~~~~r~~~~---~~g~L~I~~v~~~D  139 (167)
                      ..+..|+.+.|.|..+.  ++......|+++++..+....     .      + +....|...   ...+|+|.++..+.
T Consensus        34 v~a~vd~~V~L~C~~~~--~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N  111 (251)
T PHA02982         34 VNATVDQEVKLQCLFKD--ADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN  111 (251)
T ss_pred             hhccCCCcEEEEecCCC--cchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence            45568999999999764  455667799998764443110     0      0 001123222   23479999999999


Q ss_pred             CCcceEEEeeecC
Q psy12724        140 GYKSYQCRTKHRL  152 (167)
Q Consensus       140 ~~G~Y~C~a~n~~  152 (167)
                      . |-|+|+|....
T Consensus       112 ~-GCYtc~~ks~~  123 (251)
T PHA02982        112 L-GCFTCEAKDAE  123 (251)
T ss_pred             C-CceEEEEecCC
Confidence            8 99999998743

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.35  E-value=0.027  Score=39.70  Aligned_cols=75  Identities=8%  Similarity=0.076  Sum_probs=47.9

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEee---------eecCCceEEEccC---C--eEEEeecCcCC
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVDM---------TESTDGKYLVLPS---G--ELHIRDVGPED  139 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~---------~~~~~~r~~~~~~---g--~L~I~~v~~~D  139 (167)
                      ..+..|+++.|.|.+.+. .-.. -.++|.|.-...+ ++.         .+...+|+....+   +  .|.|.+++.+|
T Consensus         8 ~lv~p~~sv~LsC~~sg~-~~s~e~~~~wvRq~pg~l-E~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D   85 (115)
T cd05721           8 VLASSNGAASLVCEYTYN-GFSKEFRASLLKGADSAV-EVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ   85 (115)
T ss_pred             eEEcCCCCEEEEEEecCC-ccccEEEEEEEEeCCCCc-EEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence            356679999999999654 2233 4679988532221 111         0112345544422   1  59999999999


Q ss_pred             CCcceEEEeeecC
Q psy12724        140 GYKSYQCRTKHRL  152 (167)
Q Consensus       140 ~~G~Y~C~a~n~~  152 (167)
                      . +.|.|.-+...
T Consensus        86 T-a~Y~Ca~e~my   97 (115)
T cd05721          86 T-DIYFCKIELMY   97 (115)
T ss_pred             C-eEEEEEeeecc
Confidence            9 99999876554

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=96.32  E-value=0.016  Score=40.12  Aligned_cols=35  Identities=11%  Similarity=0.171  Sum_probs=26.9

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      ++++....|.+|+++.|.|.-.  |.+ +..++|+|..
T Consensus         2 tie~~p~~~~~G~~V~L~v~~~--p~~-~~~~~W~kg~   36 (105)
T cd05774           2 TIELVPPQVAEGENVLLLVHNL--PEN-LLAYAWYKGK   36 (105)
T ss_pred             eEeccCCcccCCCCEEEEecCC--CCC-ceEEEEEcCC
Confidence            4566778899999999999654  433 5689999973

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=96.31  E-value=0.0084  Score=38.30  Aligned_cols=25  Identities=16%  Similarity=0.252  Sum_probs=17.0

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCCcee
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDGGQY   55 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~   55 (167)
                      .+|+|.|.+..+  .+.+.|+|++. .+
T Consensus         1 ~~L~C~a~~~~p--~~~~~W~~~g~-~i   25 (76)
T cd05895           1 LVLRCETVSEYP--SLRFKWFKNGK-EI   25 (76)
T ss_pred             CEEEEecccCCC--CCceEEEECCc-cc
Confidence            379999975432  24799999744 44

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=96.27  E-value=0.0066  Score=39.83  Aligned_cols=23  Identities=4%  Similarity=0.175  Sum_probs=17.6

Q ss_pred             EEeecCCCCCCcceeeEEeeCCCceee
Q psy12724         30 FKCNLPSFVSDHLDVVSWADTDGGQYQ   56 (167)
Q Consensus        30 l~C~a~~~~~~~~~~i~W~k~~~~~~~   56 (167)
                      +.|.+.|.|.|   .|+|+|++. .+.
T Consensus         3 i~~~v~G~P~P---~v~W~k~g~-~i~   25 (81)
T cd04971           3 IPFTVRGNPKP---TLTWYHNGA-VLN   25 (81)
T ss_pred             EEEEeEeeCCC---cEEEEECCE-ECc
Confidence            68999998864   899999753 443

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.17  E-value=0.022  Score=39.07  Aligned_cols=72  Identities=26%  Similarity=0.356  Sum_probs=41.1

Q ss_pred             EeCCcEEEEeeeCCccCCc-ceeEEEEeCCCeeeEEee-eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCc
Q psy12724         78 LKGNSAVLKCHIPSFVADY-VAVESWISDQGEELFVDM-TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT  153 (167)
Q Consensus        78 ~~G~~a~l~C~~~~~~~~p-~p~i~W~k~~~~~l~~~~-~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~  153 (167)
                      ..+..|.|.|.+.++. +| .-.++|.+|++..-.... ..+.++.|.+.  ..|.|..-...-. ..|+|.+.+...
T Consensus        17 ~~~~~atLtClV~~f~-~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~--S~L~v~~~~W~~g-~~ytC~V~H~~l   90 (99)
T cd04986          17 LLGSSASLTCTLSGLR-DPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVS--SVLPGCAEEWNKG-EPFACTVTHPEG   90 (99)
T ss_pred             CcCCccEEEEEEeccC-CCCCeEEEEEECCccCcEEcCcccCCCCCEEEE--EEEEeCHHHhcCC-CeEEEEEECCCc
Confidence            3688899999998873 23 236899999742111000 01123344332  3465553222332 459999998764

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>smart00409 IG Immunoglobulin

Probab=96.16  E-value=0.054  Score=33.72  Aligned_cols=35  Identities=20%  Similarity=0.396  Sum_probs=27.2

Q ss_pred             eEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCcee
Q psy12724         18 YDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQY   55 (167)
Q Consensus        18 ~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~   55 (167)
                      ....+.+|+++.|.|.+.+.+.   +.+.|.++++..+
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~---~~~~W~~~~~~~v   36 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGSPP---PEVTWYKQGGKLL   36 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCC---CeEEEEECCCEEc
Confidence            4567889999999999998732   4799999844444

>smart00410 IG_like Immunoglobulin like

Probab=96.16  E-value=0.054  Score=33.72  Aligned_cols=35  Identities=20%  Similarity=0.396  Sum_probs=27.2

Q ss_pred             eEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCcee
Q psy12724         18 YDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQY   55 (167)
Q Consensus        18 ~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~   55 (167)
                      ....+.+|+++.|.|.+.+.+.   +.+.|.++++..+
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~---~~~~W~~~~~~~v   36 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGSPP---PEVTWYKQGGKLL   36 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCC---CeEEEEECCCEEc
Confidence            4567889999999999998732   4799999844444

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.12  E-value=0.021  Score=36.46  Aligned_cols=49  Identities=16%  Similarity=0.379  Sum_probs=32.7

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeee
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      ...+.|.|.+.       ..|+|+|+.  .+.+            ..+-.|.+..+...-. |.|.|.+++
T Consensus         6 ~~~V~L~C~~~-------tsi~W~kG~--~~~~------------~~~~tlnLGs~~~DPR-G~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNGA-------TNITWKKGK--EILE------------VSNTLLDLGSRINDPR-GTYSCKESE   54 (69)
T ss_pred             CceEEEEecCC-------CcEEEecCc--cccc------------ccccEEeccCcccCCC-cceEecCcc
Confidence            44699999762       248999943  3321            1144566666666665 999999988

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=96.02  E-value=0.026  Score=39.09  Aligned_cols=36  Identities=17%  Similarity=0.339  Sum_probs=24.3

Q ss_pred             EEeEEEEEeCCcEEEEeecCC------CC--CCcceeeEEeeCC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPS------FV--SDHLDVVSWADTD   51 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~------~~--~~~~~~i~W~k~~   51 (167)
                      +.+...+.+|+.+.|+|....      +.  ....-.+.|+|++
T Consensus         6 ~~~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~   49 (104)
T cd05896           6 DLKKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSS   49 (104)
T ss_pred             ceeeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECC
Confidence            345577999999999999722      11  1111259999995

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=95.97  E-value=0.012  Score=38.65  Aligned_cols=24  Identities=17%  Similarity=0.302  Sum_probs=20.0

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      |+++.|.|.+.+.+.   +.+.|.+++
T Consensus         1 Ge~~~l~C~~~~~~~---~~~~W~~~~   24 (84)
T cd05861           1 GETITVNCIVQGNEV---VDFSWTYPG   24 (84)
T ss_pred             CCcEEEEEEEECCCc---cEEEEEECC
Confidence            789999999998654   579999764

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=95.95  E-value=0.023  Score=40.03  Aligned_cols=68  Identities=15%  Similarity=0.228  Sum_probs=40.8

Q ss_pred             eCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEee------eecCCceEEEccCCeEEEeecCcCC-CCcceEEEeee
Q psy12724         79 KGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVDM------TESTDGKYLVLPSGELHIRDVGPED-GYKSYQCRTKH  150 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~------~~~~~~r~~~~~~g~L~I~~v~~~D-~~G~Y~C~a~n  150 (167)
                      .++.++|.|.+.++.  |. -.++|+||+ ..+....      ..+.++.|.+.  ..|.|..-...| . -.|+|.+.+
T Consensus        17 ~~~~~tL~Cla~gFy--P~~I~V~W~kng-~~l~~g~~~~~~~~~~~~gTYs~~--S~L~v~~~~w~~~~-~~ytC~V~H   90 (115)
T cd05769          17 NKRKATLVCLATGFY--PDHVSLSWKVNG-KEVTDGVATDPQALRENTSTYSIS--SRLRVSATEWFNPR-NTFTCIVQF   90 (115)
T ss_pred             cCCCcEEEEEEEeEe--CCCcEEEEEECC-EECCCCcccccceecCCCCeEEEE--EEEEEChHHhccCC-CeEEEEEEE
Confidence            467899999998763  44 378999997 4442110      00011233332  246666555433 4 589999998


Q ss_pred             cC
Q psy12724        151 RL  152 (167)
Q Consensus       151 ~~  152 (167)
                      ..
T Consensus        91 ~g   92 (115)
T cd05769          91 YG   92 (115)
T ss_pred             eC
Confidence            75

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=95.94  E-value=0.03  Score=37.45  Aligned_cols=75  Identities=12%  Similarity=0.311  Sum_probs=43.1

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeCCCceeee-cCCceEE--EeeeEEEecCeEEEeCCcEEEEeeeCCccCCcceeE-
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI-DNQDFVV--SQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVE-  100 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~-~~~~~v~--~g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i-  100 (167)
                      |+.+.|.|.|.|+.++.+ .++|+|++...... .......  .|.|.... ...+..++...+.|.+... +.+.|.+ 
T Consensus        14 ~~~~~L~C~a~gF~P~~i-~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s-~l~v~~~~~~~ytC~V~H~-~~~~~~~~   90 (93)
T cd07698          14 DGSLTLSCHATGFYPRDI-EVTWLRDGEDSVDDVESGEILPNGDGTYQLWV-TLEVPPEDKARYSCRVEHS-GLKEPLIV   90 (93)
T ss_pred             CCcEEEEEEEEEEeCCCc-EEEEEECCEECcccccccceEECCCCeEEEEE-EEEECCCCCCEEEEEEEeC-CCCCCeEE
Confidence            788999999999644322 68999985311111 0001111  34565432 1344456778999999543 4455543 


Q ss_pred             EE
Q psy12724        101 SW  102 (167)
Q Consensus       101 ~W  102 (167)
                      .|
T Consensus        91 ~w   92 (93)
T cd07698          91 PW   92 (93)
T ss_pred             eC
Confidence            56

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.90  E-value=0.042  Score=37.24  Aligned_cols=68  Identities=18%  Similarity=0.329  Sum_probs=38.7

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .++.+.|-|.+.++.. +.-.++|+||+. . ....     ..+.++.|.+.  ..|.|..-..... -.|+|.+.+..
T Consensus        15 ~~~~~~L~C~a~gFyP-~~i~vtW~k~g~-~-~~~~~~~~~~~~~dgty~~~--s~L~v~~~~w~~~-~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLP-EPVTFTWNSGSN-S-TSGVKTYPAVLQSGGLYTAS--SQLTVPASEWKGK-ESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEEC-CCcEEEEeECCE-E-CCCcEECCCEeCCCCCEEEE--EEEEEeHHHcCCC-CcEEEEEEeCC
Confidence            4677999999988732 234679999973 3 1110     00113334332  1355444332234 58999999875

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=95.88  E-value=0.047  Score=36.01  Aligned_cols=27  Identities=15%  Similarity=0.234  Sum_probs=20.3

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      |+++.|.|.+.+.+.+ ...+.|..++.
T Consensus         1 Ge~~~L~C~~~~~~~~-~~~~~W~~p~~   27 (86)
T cd05862           1 GEKLVLNCTARTELNV-GIDFQWDYPGK   27 (86)
T ss_pred             CCcEEEEEEEEeCCCC-cEEEEEEcCCc
Confidence            7899999999876533 23589988754

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=95.80  E-value=0.045  Score=36.94  Aligned_cols=66  Identities=11%  Similarity=0.281  Sum_probs=40.4

Q ss_pred             EeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--ceEE--EeeeEEEecCeEEEeCCcEEEEeeeCC
Q psy12724         23 IKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--DFVV--SQSYTVNIMDEHVLKGNSAVLKCHIPS   91 (167)
Q Consensus        23 ~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--~~v~--~g~y~c~~~~~~v~~G~~a~l~C~~~~   91 (167)
                      ..|+.+.|.|.|.++-++.+ .++|+|++. .+.....  ...-  .|.|..... ..+..++...+.|.+.+
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i-~v~W~~~g~-~~~~~~~~~~~~~~~dgTy~~~s~-L~~~~~~~~~ysC~V~H   81 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEI-TVKWFKNGQ-EETEGVVSTELIPNGDWTYQILVM-LETTPSRGDTYTCVVEH   81 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCC-EEEEEECCe-ecCCCceecceEECCCCcEEEEEE-EEEcCCCCCEEEEEEEe
Confidence            36899999999999655433 589999854 3322100  0111  245665332 23445677799999954

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=95.79  E-value=0.04  Score=35.63  Aligned_cols=25  Identities=8%  Similarity=0.155  Sum_probs=18.0

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCCcee
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDGGQY   55 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~   55 (167)
                      +.|.|.+.++.+  .+.|+|+|++ +.+
T Consensus         2 ~~L~C~v~g~~P--~~~v~W~~~g-~~l   26 (82)
T cd05759           2 YNLTCRARGAKP--AAEIIWFRDG-EVL   26 (82)
T ss_pred             EEEEEEEeCccC--CCEEEEEECC-EEc
Confidence            579999988522  2479999974 344

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.79  E-value=0.012  Score=39.98  Aligned_cols=68  Identities=12%  Similarity=0.283  Sum_probs=39.6

Q ss_pred             EEEeCCcEEEEeecCCC--CCCcceeeEEeeCCCceeeecCC--ceEEEeeeEEEecCeEEEeC---CcEEEEeeeCC
Q psy12724         21 FVIKGNAAVFKCNLPSF--VSDHLDVVSWADTDGGQYQIDNQ--DFVVSQSYTVNIMDEHVLKG---NSAVLKCHIPS   91 (167)
Q Consensus        21 ~v~~G~~~~l~C~a~~~--~~~~~~~i~W~k~~~~~~~~~~~--~~v~~g~y~c~~~~~~v~~G---~~a~l~C~~~~   91 (167)
                      .+..|+.+.|.|.|.|+  |.+ + .++|.|+++........  +.--.|.|+.... ..+..+   +...+.|.+.+
T Consensus        10 ~l~~~~~~tLtC~v~gf~yP~~-i-~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~-l~v~~~~w~~g~~ysC~V~H   84 (96)
T cd07696          10 QLLLTKSVKLTCLVTNLTSPEG-V-NVTWTRGSGEPVKASIQPPESHNNATLSVTST-LNVSTDDWISGDTFQCKVTH   84 (96)
T ss_pred             HhccCCCeEEEEEEeCCCCCCC-c-EEEEEECCeEeeeEEecccccCCCCCEEEEEE-EEeCHHHccCCCcEEEEEEC
Confidence            35568999999999999  443 3 68999987543321100  0011355665432 112222   35678898853

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=95.63  E-value=0.054  Score=36.67  Aligned_cols=75  Identities=12%  Similarity=0.243  Sum_probs=43.7

Q ss_pred             eCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--ceE--EEeeeEEEecCeEEEeCCcEEEEeeeCCccCCccee
Q psy12724         24 KGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--DFV--VSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAV   99 (167)
Q Consensus        24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--~~v--~~g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~   99 (167)
                      .|+.+.|.|.|.|+-+..+ .++|+|++. .+..+..  ...  -.|.|..... ..+..++...+.|.+... +-+.|.
T Consensus        14 ~~~~~tL~C~a~gFyP~~I-~v~W~~~g~-~~~~~~~~~~~~~~~Dgty~~~s~-L~v~~~~~~~ytC~V~H~-~l~~p~   89 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVL-NVTWLKNGV-PVTDGVSETRYYPRQDLSFQKFSY-LNFTPEEGDIYSCIVEHW-GLETPA   89 (94)
T ss_pred             CCCCeEEEEEEEEEECCcC-EEEEEECCe-EccCceEEeeeEeCCCCcEEEEEE-EEEECCCCCeEEEEEEeC-CCCCce
Confidence            3666899999999654434 589999854 3322100  011  1356665432 345567778999999543 334443


Q ss_pred             E-EE
Q psy12724        100 E-SW  102 (167)
Q Consensus       100 i-~W  102 (167)
                      + .|
T Consensus        90 ~~~w   93 (94)
T cd05767          90 TRYW   93 (94)
T ss_pred             EEEc
Confidence            2 45

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>KOG4597|consensus

Probab=95.59  E-value=0.015  Score=49.89  Aligned_cols=72  Identities=15%  Similarity=0.102  Sum_probs=51.7

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC--Ceee-EEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ--GEEL-FVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~--~~~l-~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      ..+-.|+++.+.|-+.|   .|.++|+|.|--  +..+ .+.  ...-++-.+.+.+.|.|-|..+.|+ |-|+|.|.|.
T Consensus       206 w~vg~wetcS~tCg~~G---~q~r~V~c~qv~anr~~vv~~~--nq~~e~p~vtstcql~ic~ewq~~a-~w~tCs~rcg  279 (560)
T KOG4597|consen  206 WFVGDWETCSSTCGVQG---RQYRVVTCEQVFANRENVVMRP--NQTVENPVVTSTCQLVICNEWQADA-GWYTCSARCG  279 (560)
T ss_pred             hhcccchhhcccccccC---CcCceeeeehhhccccceeecC--ccccCCcceeeeeeEEEcchhhcCC-Cceeeccccc
Confidence            35678999999999875   488999998621  1222 110  0112344555567899999999999 9999999998


Q ss_pred             C
Q psy12724        152 L  152 (167)
Q Consensus       152 ~  152 (167)
                      .
T Consensus       280 ~  280 (560)
T KOG4597|consen  280 A  280 (560)
T ss_pred             c
Confidence            6

>KOG3515|consensus

Probab=95.37  E-value=0.014  Score=52.99  Aligned_cols=65  Identities=15%  Similarity=0.259  Sum_probs=51.7

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+..|+++.|+|.+.+  ++|.+.+.|++.+. .+        .+|+....+..|...+.....- +.|.|.|.|..
T Consensus        18 ~~~~g~~v~l~C~v~~--~pp~~~~eW~h~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~c~a~ns~   82 (741)
T KOG3515|consen   18 GLRLGEDVPLPCRVNS--NPPEIDVEWYHSTS-GE--------HGRYATIADPTLVTTGDVRDTV-AELNCRAFNSV   82 (741)
T ss_pred             hhccCCcceeeeecCC--CCCCcceEEEecCc-cc--------ccccccccCCceeeecchhhhh-hhhhhhhcccc
Confidence            5678999999999986  56788999999873 32        2566666777888888777774 99999999984

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=95.34  E-value=0.033  Score=37.07  Aligned_cols=35  Identities=14%  Similarity=0.068  Sum_probs=25.7

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +.+.|. ..|.+|+++.|+|.+... .   ....|+|++.
T Consensus         5 L~a~p~-~vV~~G~~VtL~C~~~~~-~---~~f~l~k~g~   39 (91)
T cd05751           5 LWAEPS-SVVPLGKPVTLRCQGPYG-A---VEYRLYREGS   39 (91)
T ss_pred             EEecCC-CccCCCCcEEEEEecCCC-C---CEEEEEECCC
Confidence            445553 678999999999998633 2   3688998854

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=95.13  E-value=0.079  Score=35.80  Aligned_cols=65  Identities=8%  Similarity=0.176  Sum_probs=40.0

Q ss_pred             EeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc-eE---EEeeeEEEecCeEEEeCCcEEEEeeeCC
Q psy12724         23 IKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD-FV---VSQSYTVNIMDEHVLKGNSAVLKCHIPS   91 (167)
Q Consensus        23 ~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~-~v---~~g~y~c~~~~~~v~~G~~a~l~C~~~~   91 (167)
                      ..|+...|.|.|.|+-++.+ .++|+|++. .+. +... .+   -.|.|+.... ..+..++...+.|++..
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i-~v~W~~dg~-~~~-~~~~~~~~p~~d~tyq~~s~-l~~~~~~~~~ysC~V~H   81 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDI-EIRLLKNGV-KIP-KVEQSDLSFSKDWTFYLLKS-TEFTPTKGDEYACRVRH   81 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCC-EEEEEECCE-ECC-CcEECcEEECCCCCEEEEEE-EEECCCCCCeEEEEEEE
Confidence            34777899999999644323 589999854 332 2110 01   1356665432 33446778889999954

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=95.06  E-value=0.096  Score=35.92  Aligned_cols=72  Identities=22%  Similarity=0.236  Sum_probs=40.9

Q ss_pred             EEEeCCcEEEEeeeCCccCCcc--eeEEEEeCCCeeeEEeee-ecCCceEEEccCCeEEEeecCcCCCCc-ceEEEeeec
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYV--AVESWISDQGEELFVDMT-ESTDGKYLVLPSGELHIRDVGPEDGYK-SYQCRTKHR  151 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~--p~i~W~k~~~~~l~~~~~-~~~~~r~~~~~~g~L~I~~v~~~D~~G-~Y~C~a~n~  151 (167)
                      ...+|..+++.|.+++.  .|.  ..+.|+|++ ..+..... +..+.+-.....-.+.+.- ..+|- | .|+|.|.-.
T Consensus        11 ~l~~G~~vtv~C~v~~v--~P~~~l~v~LlkG~-~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~-g~~fsC~A~L~   85 (99)
T cd07689          11 PLEEGKPVTVKCEVPDV--YPFDRLEIELLKGE-TLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDI-GKVLVCRAKLH   85 (99)
T ss_pred             cccCCceEEEEEEecCc--ccCCceEEEEecCc-ceecccccccccccCCCCCcceeEEEec-chhhC-CcEEEEEEEEe
Confidence            34689999999999864  344  578999876 34321100 0000000000112455555 47775 7 999999865


Q ss_pred             C
Q psy12724        152 L  152 (167)
Q Consensus       152 ~  152 (167)
                      +
T Consensus        86 l   86 (99)
T cd07689          86 I   86 (99)
T ss_pred             e
Confidence            4

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=94.51  E-value=0.037  Score=37.95  Aligned_cols=74  Identities=15%  Similarity=0.231  Sum_probs=43.2

Q ss_pred             EEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC---ceEE----EeeeEEEecCeEEEe---CCcEEEEeeeCC
Q psy12724         22 VIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ---DFVV----SQSYTVNIMDEHVLK---GNSAVLKCHIPS   91 (167)
Q Consensus        22 v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~---~~v~----~g~y~c~~~~~~v~~---G~~a~l~C~~~~   91 (167)
                      +..|+.+.|.|.|.|+-+..+ .++|+|++. .+.....   ....    .|.|+.... ..+..   .+...+.|.+.+
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i-~v~W~k~g~-~~~~~~~~~~~~~~~~~~dgTy~~~s~-L~v~~~~w~~~~~ytC~V~H   89 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDI-FVKWLQNGQ-PLSKQKYVTTAPMQEPGGNESYFLYSK-LTVSAEDWNAGDVFTCVVGH   89 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCC-EEEEEECCE-ECCcccccccCcccccCCCCeEEEEEE-EEEcHHHhcCCCcEEEEeEe
Confidence            445789999999999755433 589999854 2321110   0111    277876543 23333   245789999854


Q ss_pred             ccCCccee
Q psy12724         92 FVADYVAV   99 (167)
Q Consensus        92 ~~~~p~p~   99 (167)
                      . +-|.|.
T Consensus        90 ~-~l~~~l   96 (102)
T cd05768          90 E-ALPLQL   96 (102)
T ss_pred             C-CCCchh
Confidence            3 334443

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=94.47  E-value=0.19  Score=32.99  Aligned_cols=60  Identities=15%  Similarity=0.191  Sum_probs=32.9

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCCceeeecCCceEEEeeeEEE--ecCeEEEeCCcEEEEeeeC
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVVSQSYTVN--IMDEHVLKGNSAVLKCHIP   90 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v~~g~y~c~--~~~~~v~~G~~a~l~C~~~   90 (167)
                      +.|.|.+.+.-++  +.|+|+|++. .+..........+.|+..  ..-.....-+...|.|+|.
T Consensus         2 ~~L~C~s~~skP~--a~i~W~k~~~-~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~   63 (80)
T cd05885           2 VELTCLSPRSKPA--ATLRWYRDRK-ELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEAS   63 (80)
T ss_pred             EEEEEeCCCccCC--CeEEEEECCE-ECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEE
Confidence            6899999876443  6899999964 443211000001223211  0112334567788889884

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=94.00  E-value=0.041  Score=33.99  Aligned_cols=19  Identities=16%  Similarity=0.380  Sum_probs=16.5

Q ss_pred             EEEEeecCCCCCCcceeeEEe
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWA   48 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~   48 (167)
                      +.|.|.+.+.+.+  +.++|.
T Consensus        18 ~~l~C~~~~~~~~--~~~~W~   36 (75)
T PF13927_consen   18 VTLTCSAEGGPPP--PSISWY   36 (75)
T ss_dssp             EEEEEEESSEESS--EEEEEE
T ss_pred             EEEEEEEccccCC--eEEEEE
Confidence            9999999998753  589999

...

>PHA03042 CD47-like protein; Provisional

Probab=93.82  E-value=0.24  Score=39.91  Aligned_cols=62  Identities=11%  Similarity=0.278  Sum_probs=38.0

Q ss_pred             eCCcEEEEeeeCCccCC--cceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVAD--YVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~--p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      =.+++.++|.+......  -.-.+.|+.|+ ..++..     ++.    ...+|.......-+  |+|+|.|.+..
T Consensus        30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~-~~If~~-----n~t----n~aSL~~~f~~~l~--GNYTCEv~~l~   93 (286)
T PHA03042         30 CNKTIVIVCNLNLLIYYNISNIHINWKFNN-KVIFKK-----NNT----NTSSLKFNFSKNLS--GNYTCEAINKF   93 (286)
T ss_pred             cCceEEEEeecCChhhcCccceEEEEEeCC-eeEEEe-----cCC----cceEEEEeccccCC--CceeEEEeecc
Confidence            37889999998531011  13357999997 455421     111    11346666555554  99999998865

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=93.81  E-value=0.29  Score=34.12  Aligned_cols=70  Identities=16%  Similarity=0.317  Sum_probs=39.3

Q ss_pred             EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE---EE-eeeEEEecCe-EEEeCC-cEEEEeeeCC
Q psy12724         19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV---VS-QSYTVNIMDE-HVLKGN-SAVLKCHIPS   91 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v---~~-g~y~c~~~~~-~v~~G~-~a~l~C~~~~   91 (167)
                      ......|+.+.|.|.|.++-+.. -.++|+|++. .+.. +...+   .. +.|+....=. ....++ ...+.|.+.+
T Consensus        15 ~~~~~~g~~~tL~C~a~gF~P~~-i~v~W~kng~-~~~~-~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H   90 (111)
T cd05772          15 SGRANPGQSVNFTCSAHGFSPRD-ITVKWLKNGN-ELSA-EQPNITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQH   90 (111)
T ss_pred             hhccCCCCCEEEEEEEeeEeCCC-CEEEEEECCE-ECcc-cccceeeCCCCCcEEEEEEEEEECccccccCceEEEEEe
Confidence            34456788999999999975432 3689999743 3322 11111   12 4676543211 112222 2569999854

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=93.62  E-value=0.22  Score=35.56  Aligned_cols=39  Identities=8%  Similarity=0.200  Sum_probs=27.3

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      ..+.+.+....+|+.+.|.|.|.++.++ ...|.|+|++.
T Consensus        41 v~~~~~~~~~~~~~~~~L~C~a~g~~P~-~~~i~W~~~g~   79 (139)
T cd05771          41 VRLSLEKLVSMIEEPQTLICHIAGYYPL-DVQVEWTREPP   79 (139)
T ss_pred             eEEeCCCceeecCCcEEEEEEECCCCCC-CeEEEEEECCC
Confidence            3344444445579999999999997432 14699999864

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=93.48  E-value=0.071  Score=34.72  Aligned_cols=64  Identities=14%  Similarity=0.321  Sum_probs=38.9

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc--eE--EEeeeEEEecCeEEEeCCcEEEEeeeCC
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD--FV--VSQSYTVNIMDEHVLKGNSAVLKCHIPS   91 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~--~v--~~g~y~c~~~~~~v~~G~~a~l~C~~~~   91 (167)
                      ++.+.|.|.|.++-++.+ .|+|++++. .+......  ..  -.|.|..... ..+..++...+.|.+..
T Consensus         8 ~~~~~L~C~v~~f~P~~i-~v~W~~~~~-~~~~~~~~~~~~~~~dgty~~~s~-l~v~~~~~~~ysC~V~H   75 (83)
T PF07654_consen    8 GGSVTLTCLVSGFYPKDI-TVTWLKNGK-EVTEGVETTPPPPNSDGTYSVTSS-LTVTWNSGDEYSCRVTH   75 (83)
T ss_dssp             TSEEEEEEEEEEEBSSTE-EEEEEETTE-EETTTEEEEEEEEETTSEEEEEEE-EEEETTTTGGEEEEEEE
T ss_pred             CCCEEEEEEEEEEECCCc-EEEEEeccc-eeeeeeeecccccccccceeeeEE-EEecCCCCCEEEEEEEE
Confidence            789999999999755434 599999854 33211000  11  1356665432 23345667788999853

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=93.44  E-value=0.6  Score=32.72  Aligned_cols=33  Identities=15%  Similarity=0.201  Sum_probs=24.5

Q ss_pred             EeEEEEEeCCcEEEEeecCCCC-CCcceeeEEee
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFV-SDHLDVVSWAD   49 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~-~~~~~~i~W~k   49 (167)
                      +.++.+..|+++.|.|...+.. ......|.|..
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~   38 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHY   38 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEE
Confidence            4567899999999999997653 11246899943

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=93.23  E-value=0.14  Score=35.04  Aligned_cols=33  Identities=18%  Similarity=0.348  Sum_probs=27.1

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      +.|....|.+|+++.|.|.+.+ +.   +.+.|+|..
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~---~~v~Wykq~   35 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GH---DNMYWYRQD   35 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CC---CEEEEEEEC
Confidence            4677889999999999999987 32   469999874

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=93.21  E-value=0.14  Score=34.79  Aligned_cols=37  Identities=19%  Similarity=0.365  Sum_probs=28.3

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      ....|....+.+|+++.|.|.+.+....  ..+.|+|..
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~--~~~~Wyrq~   39 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVSS--NYLAWYQQK   39 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCCC--CcEEEEEEC
Confidence            3456778899999999999999765421  359999763

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=92.76  E-value=0.18  Score=34.07  Aligned_cols=34  Identities=15%  Similarity=0.241  Sum_probs=27.6

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      ..+....+.+|+++.|.|.+++.+.   +.+.|+|..
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~~---~~v~W~k~~   36 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTSTF---YYLFWYRQY   36 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCCc---cEEEEEEEC
Confidence            4677889999999999999987633   469999853

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=92.66  E-value=0.27  Score=31.35  Aligned_cols=61  Identities=15%  Similarity=0.277  Sum_probs=34.6

Q ss_pred             cEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--ceE--EEeeeEEEecCeEE---EeCCcEEEEeeeC
Q psy12724         27 AAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--DFV--VSQSYTVNIMDEHV---LKGNSAVLKCHIP   90 (167)
Q Consensus        27 ~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--~~v--~~g~y~c~~~~~~v---~~G~~a~l~C~~~   90 (167)
                      .+.|.|.|.++-++. ..++|+|++. .+.....  ..+  -.|.|+.... ..+   ..+....+.|.+.
T Consensus         1 ~~~L~C~a~gf~P~~-i~v~W~k~g~-~~~~~~~~~~~~~~~~gt~~~~s~-L~v~~~~~~~~~~~tC~V~   68 (75)
T smart00407        1 KATLVCLVSGFYPPD-ITVTWLRNGQ-EVTSGVSTTDPLKNSDGTYFLSSY-LTVSASTWESGDTYTCQVT   68 (75)
T ss_pred             CeEEEEEEEeEeCCC-CEEEEEECCE-ECCCCEEECceEECCCCCEEEEEE-EEEccccCCCCCEEEEEEE
Confidence            368999999974332 3699999743 2221100  011  1455664321 122   3467789999985

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=92.53  E-value=1.8  Score=28.14  Aligned_cols=59  Identities=17%  Similarity=0.335  Sum_probs=33.6

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCCceeeecCCceEE---E-eeeEEEecCe--EEEeCCcEEEEeeeC
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVV---S-QSYTVNIMDE--HVLKGNSAVLKCHIP   90 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v~---~-g~y~c~~~~~--~v~~G~~a~l~C~~~   90 (167)
                      +.|.|.|.++-++  ..|+|+|++. .+... ...+.   . |.|+....=.  .....+...+.|.+.
T Consensus         2 ~~LtC~a~g~~P~--~~ItW~k~g~-~l~~~-~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~   66 (83)
T cd07705           2 AKLRCTSSGSKPA--ANIKWRKGDQ-ELEGA-PTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVG   66 (83)
T ss_pred             EEEEEEecCccCC--CEeEEEECCE-ECCCc-ceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEE
Confidence            6899999987433  3899999853 33221 11111   1 3454332111  112456689999985

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd00098 IgC Immunoglobulin Constant domain

Probab=92.40  E-value=0.14  Score=33.69  Aligned_cols=65  Identities=15%  Similarity=0.281  Sum_probs=36.8

Q ss_pred             EeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC-c-eE--EEeeeEEEecCeEEEeC---CcEEEEeeeC
Q psy12724         23 IKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ-D-FV--VSQSYTVNIMDEHVLKG---NSAVLKCHIP   90 (167)
Q Consensus        23 ~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~-~-~v--~~g~y~c~~~~~~v~~G---~~a~l~C~~~   90 (167)
                      ..|+.+.|.|.|.++.++ ...|+|++++. .+..... . ..  ..|.|+.... ..+...   ....+.|.+.
T Consensus        11 ~~~~~~~L~C~a~g~~P~-~~~i~W~~~g~-~~~~~~~~~~~~~~~~gt~~~~s~-l~v~~~~~~~~~~y~C~v~   82 (95)
T cd00098          11 LLGGSVTLTCLATGFYPP-DITVTWLKNGK-ELTSGVTTTPPVPNSDGTYSVSSQ-LTVSPSDWNSGDTYTCVVT   82 (95)
T ss_pred             HcCCCeEEEEEEeeEECC-CcEEEEEECCE-ECCCceeccccccCCCCCEEEEEE-EEECHHHhCCCCCEEEEEE
Confidence            468999999999998432 13699999743 3322111 0 01  1344554221 122233   6677888874

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=92.37  E-value=0.22  Score=34.17  Aligned_cols=38  Identities=13%  Similarity=0.240  Sum_probs=28.7

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCccee--eEEeeCCC
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDV--VSWADTDG   52 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~--i~W~k~~~   52 (167)
                      ....+....+.+|+...|.|.++|..+.  +.  |.|+|++.
T Consensus         4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~--a~L~i~W~rG~~   43 (100)
T cd05755           4 VELSPLPSWQPVGKNYTLQCDVPGVAPR--QNLTVVLLRGNE   43 (100)
T ss_pred             EEEecCCCcccCCCcEEEEEEEcCcCCC--CcEEEEEeeCCE
Confidence            3445566678999999999999986432  33  79999864

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=91.94  E-value=0.61  Score=32.09  Aligned_cols=32  Identities=13%  Similarity=0.294  Sum_probs=26.6

Q ss_pred             EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      ...|-.|++..|.|.+.++|++  ..+.|.++..
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p--~~~~W~~~~~   43 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKP--EHQQWIYMNR   43 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCC--eeeEEEcCCc
Confidence            4668999999999999999975  3489998843

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=91.68  E-value=0.23  Score=34.15  Aligned_cols=34  Identities=9%  Similarity=0.353  Sum_probs=26.7

Q ss_pred             eEEeEEEEEeCCcEEEEeecCC--CCCCcceeeEEeeCC
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPS--FVSDHLDVVSWADTD   51 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~--~~~~~~~~i~W~k~~   51 (167)
                      +.|..+.+.+|+++.|.|.+.+  .+.   +.+.|+|..
T Consensus         3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~---~~v~Wyrq~   38 (116)
T cd04982           3 QPQLSITREESKSVTISCKVSGIDFST---TYIHWYRQK   38 (116)
T ss_pred             CcCCeEEeCCCCCEEEEEEEeCCCccc---cEEEEEEEC
Confidence            4567788999999999999877  333   479999863

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=91.44  E-value=0.51  Score=29.82  Aligned_cols=46  Identities=20%  Similarity=0.415  Sum_probs=28.6

Q ss_pred             EEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE------EEeeeEEEecC
Q psy12724         22 VIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV------VSQSYTVNIMD   74 (167)
Q Consensus        22 v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v------~~g~y~c~~~~   74 (167)
                      -+.|.+++|.|.-.+  .    .|.|.+++. .+..++...+      ..|.|.|.+.+
T Consensus         4 sisGTtVtlTCP~~~--~----~i~W~~n~~-~~~g~~~~~~~~~~~e~~G~Y~C~~~~   55 (65)
T cd07692           4 SISGTTVTVTCPLSG--D----DIKWKKNDQ-VSQGSDEKYLSLNHFSSSGYYHCTADN   55 (65)
T ss_pred             EEeccEEEEECCCCC--C----CceEEeCCc-cCCCCCceEEeeccCCCCceEEEEeCC
Confidence            478999999997542  2    289999963 2222212221      26788887753

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=91.41  E-value=0.64  Score=31.16  Aligned_cols=53  Identities=15%  Similarity=0.128  Sum_probs=35.3

Q ss_pred             EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee--cCCc--------eEEEeeeEEEe
Q psy12724         19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI--DNQD--------FVVSQSYTVNI   72 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~--~~~~--------~v~~g~y~c~~   72 (167)
                      +..+..|++..|.|++++.+.| -+.|.|...+++....  .+..        ...+|.++|.+
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p-~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V   70 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLP-AFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIV   70 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCC-CccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEE
Confidence            5679999999999999765432 2479999876653321  1111        11378888887

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=90.93  E-value=1.5  Score=28.61  Aligned_cols=59  Identities=10%  Similarity=0.188  Sum_probs=33.0

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE---EEeeeEEEecCeEEE---eCCcEEEEeeeC
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV---VSQSYTVNIMDEHVL---KGNSAVLKCHIP   90 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v---~~g~y~c~~~~~~v~---~G~~a~l~C~~~   90 (167)
                      +.|.|.+.++-++  ..|+|+|++. .+........   ..|.|+.... ..+.   ..+...+.|++.
T Consensus         2 ~~LtC~a~gf~P~--~~itW~kng~-~l~~~~~~~~~~~~~~t~~~~s~-L~~~~~~~d~g~~ytC~v~   66 (83)
T cd05884           2 MQLTCKTSGSKPA--ADIRWFKNDK-EIKDVKYLKEEDANRKTFTVSST-LDFRVDRSDDGVAIICRVD   66 (83)
T ss_pred             EEEEEEeCCccCC--CEEEEEECCE-ECcCceeeEeeCCCCCEEEEEEE-EEEEcccccCCCEEEEEEe
Confidence            5799999986543  5799999854 3321100000   1244543221 1122   456788999985

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=90.72  E-value=0.55  Score=30.56  Aligned_cols=28  Identities=14%  Similarity=0.337  Sum_probs=21.1

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeCCCce
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADTDGGQ   54 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~   54 (167)
                      |+.+.+.|.+.+.-++  +.|+|..+++..
T Consensus        14 ~~~~~~~C~s~~~~P~--~~i~W~~~~~~~   41 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPP--PQITWYLDGGPV   41 (89)
T ss_dssp             TEEEEEEEEEEEEBS---EEEEEEETTCEE
T ss_pred             ceEEEEEEEeCCeECC--eEEEEEECCCce
Confidence            5699999988665433  689999997644

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=90.64  E-value=1.6  Score=29.22  Aligned_cols=68  Identities=13%  Similarity=0.296  Sum_probs=43.4

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccC--CcceeEEEEeCCCeeeEEeeeecCCceEEEccCCe--EEEeecCcCCCCcceEEE
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVA--DYVAVESWISDQGEELFVDMTESTDGKYLVLPSGE--LHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~--~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~--L~I~~v~~~D~~G~Y~C~  147 (167)
                      ++...+..|++++..|.......  .....|.|.-|+ ..+       .+++|....++.  ..+.+.....+ -.|-|.
T Consensus        10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~-~~i-------P~~qy~~in~~~SsVT~~~~~~~~~-~L~cC~   80 (89)
T PF06328_consen   10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNG-EKI-------PGSQYRVINDTVSSVTLPNLNPTGA-TLFCCK   80 (89)
T ss_dssp             CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSS-CES-------TCGCEEEESTTEEEEEESS--SSEE-EEEEEE
T ss_pred             cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECC-EEC-------ChhHcceeCCeEEEEEEccCCCCCc-eEEEEE
Confidence            45567889999999999853211  356688999887 443       367888888875  55556555554 567776


Q ss_pred             e
Q psy12724        148 T  148 (167)
Q Consensus       148 a  148 (167)
                      -
T Consensus        81 l   81 (89)
T PF06328_consen   81 L   81 (89)
T ss_dssp             E
T ss_pred             E
Confidence            3

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=89.95  E-value=0.44  Score=32.28  Aligned_cols=33  Identities=9%  Similarity=0.247  Sum_probs=21.7

Q ss_pred             EEEEeCCcEEEEeec-CCC-CCCcceeeEEeeCCC
Q psy12724         20 VFVIKGNAAVFKCNL-PSF-VSDHLDVVSWADTDG   52 (167)
Q Consensus        20 ~~v~~G~~~~l~C~a-~~~-~~~~~~~i~W~k~~~   52 (167)
                      ..+..|.++.|.|.- ..+ .....|.+.|+||+.
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~   39 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSV   39 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCE
Confidence            457789999999972 222 011134799999953

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=89.69  E-value=0.6  Score=32.15  Aligned_cols=35  Identities=17%  Similarity=0.291  Sum_probs=27.1

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      .+.+..+.+.+|+++.|.|........  ..+.|+|.
T Consensus         3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~--~~v~Wyrq   37 (116)
T cd07706           3 TQAQPDVSVQVGEEVTLNCRYETSWTN--YYIFWYKQ   37 (116)
T ss_pred             EEeCCceEEcCCCCEEEEEEEeCCCCc--eEEEEEEE
Confidence            456778889999999999998764322  36999986

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=89.14  E-value=0.49  Score=31.54  Aligned_cols=29  Identities=17%  Similarity=0.342  Sum_probs=22.8

Q ss_pred             EEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         21 FVIKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        21 ~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      .|.+|+++.|.|.+.+...  ...+.|.|..
T Consensus         2 ~v~~G~~v~L~C~~~~~~~--~~~v~W~k~~   30 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFS--SYYIFWYRQK   30 (105)
T ss_pred             eecCCCCEEEEEEEeCCcC--cceEEEEEEC
Confidence            5789999999999987622  2469999864

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=88.90  E-value=1.7  Score=36.27  Aligned_cols=23  Identities=17%  Similarity=0.397  Sum_probs=17.3

Q ss_pred             cEEEEeeeCCccCCcceeEEEEeC
Q psy12724         82 SAVLKCHIPSFVADYVAVESWISD  105 (167)
Q Consensus        82 ~a~l~C~~~~~~~~p~p~i~W~k~  105 (167)
                      .+.|.|.|.|+.. ..-.++|.||
T Consensus       216 ~~tL~C~A~GFYP-~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYP-SSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeC-CccEEEEEec
Confidence            5799999988732 2336699999

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=88.67  E-value=2.2  Score=36.42  Aligned_cols=74  Identities=14%  Similarity=0.292  Sum_probs=48.1

Q ss_pred             EEEeCCcEEEEeeeCCccCC-cceeEEEEeCCCeeeEEee--------ee---cCCceEEEcc---------CCeEEEee
Q psy12724         76 HVLKGNSAVLKCHIPSFVAD-YVAVESWISDQGEELFVDM--------TE---STDGKYLVLP---------SGELHIRD  134 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~-p~p~i~W~k~~~~~l~~~~--------~~---~~~~r~~~~~---------~g~L~I~~  134 (167)
                      .+..|..+.|+|..+.- |+ -...++|...+ .++-|.+        .+   ..+..|.+..         +.+|+|.+
T Consensus       275 ~~~~g~~v~~~c~~s~~-~~e~i~~~~w~~t~-~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk  352 (500)
T PHA02914        275 MLEVGKRVDIECFFSMC-GNENISNAKWIDTG-FEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK  352 (500)
T ss_pred             EeccCcEEEEEEEEeec-CCcccccceEEecC-CcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence            44569999999987532 32 35567998765 4443222        00   0123344432         34799999


Q ss_pred             cCcCCCCcceEEEeeecC
Q psy12724        135 VGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       135 v~~~D~~G~Y~C~a~n~~  152 (167)
                      +..+.+ |-|.|+|...-
T Consensus       353 a~I~N~-GCY~~~a~~g~  369 (500)
T PHA02914        353 AHINNA-GCYEAQAFMGK  369 (500)
T ss_pred             EEEEcC-CceEEEEecCc
Confidence            999999 99999998653

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=87.80  E-value=0.82  Score=31.13  Aligned_cols=30  Identities=13%  Similarity=0.328  Sum_probs=22.4

Q ss_pred             EEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         21 FVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        21 ~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      .|.+|+++.|.|.+.+....  ..+.|+|.+.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~--~~~~Wyrq~~   31 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISEN--TRIYWLRWRQ   31 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCC--CeEEEEEECC
Confidence            57899999999998764322  3699998643

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=87.78  E-value=0.74  Score=31.99  Aligned_cols=33  Identities=15%  Similarity=0.253  Sum_probs=25.0

Q ss_pred             CceEEEc-cCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        119 DGKYLVL-PSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       119 ~~r~~~~-~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..|+.+. .+..|.|..+++.|+ |.|.-..+|..
T Consensus        61 n~r~~F~~enlaLlIkaAq~qDS-G~Y~LEvT~~s   94 (108)
T PF11465_consen   61 NNRFNFTSENLALLIKAAQPQDS-GLYCLEVTNES   94 (108)
T ss_dssp             HHHEEEETTTTEEEESS-SGGG--EEEEEEEEETT
T ss_pred             cceEeeeccCceEEEeecCcccC-ceEEEEEEcCC
Confidence            3567655 466899999999999 99999888854

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=86.81  E-value=1.5  Score=29.03  Aligned_cols=36  Identities=19%  Similarity=0.322  Sum_probs=27.4

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      ...+..+.+.+|+++.|.|... . ......+.|.+.+
T Consensus         5 t~~~~~v~~~~G~~v~L~C~~~-~-~~~~~~v~W~~~~   40 (114)
T PF07686_consen    5 TQPPSPVTVQEGESVTLPCSYS-S-SSNQSSVYWYRQS   40 (114)
T ss_dssp             EEEESEEEEETTSEEEEEEEEE-S-SSSGSEEEEEEEE
T ss_pred             EEeCCeEEEecCCCEEEEEEEe-C-CCCcceEEEEEEC
Confidence            3457788999999999999998 2 2223579999853

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=86.76  E-value=1.3  Score=30.58  Aligned_cols=35  Identities=20%  Similarity=0.403  Sum_probs=25.3

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCC-CcceeeEEeeC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVS-DHLDVVSWADT   50 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~-~~~~~i~W~k~   50 (167)
                      .|..+.+.+|+++.|.|..+.... .....+.|.+.
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~   39 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQ   39 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEe
Confidence            366788999999999998865431 11246999764

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=86.65  E-value=0.99  Score=29.20  Aligned_cols=58  Identities=12%  Similarity=0.211  Sum_probs=31.9

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE---EEeeeEEEecCeEE---EeCCcEEEEeeeC
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV---VSQSYTVNIMDEHV---LKGNSAVLKCHIP   90 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v---~~g~y~c~~~~~~v---~~G~~a~l~C~~~   90 (167)
                      +.|.|.+.+.-++  +.|+|+|++. .+.... ...   ..|.|+.... ..+   ...+...+.|.+.
T Consensus         2 ~~L~C~~~~~~P~--~~v~W~~~~~-~l~~~~-~~~~~~~~~~~~~~s~-l~~~~~~~d~g~~~~C~v~   65 (82)
T cd05761           2 VELTCTSSGSKPA--ATIRWFKGDK-ELKGVK-LKEEDENGKTFTVTSS-LRFQVDREDDGAPIICRVD   65 (82)
T ss_pred             EEEEEEecCcCcC--CeEEEEECCE-EccCce-eeEecCCCCEEEEEEE-EEEEcchhhCCCEEEEEEe
Confidence            6899999887332  4899999853 443211 111   1234443211 111   2345578999984

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=85.98  E-value=0.74  Score=31.22  Aligned_cols=28  Identities=25%  Similarity=0.611  Sum_probs=21.4

Q ss_pred             EeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         23 IKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        23 ~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      ..++.+.|.|.|.++-++.+ .++|+|++
T Consensus        14 ~~~~~~tL~C~a~gFyP~~I-~v~W~kng   41 (96)
T cd07697          14 EKQGQGIYLCLLENFFPDVI-QVHWREGN   41 (96)
T ss_pred             ccCCCEEEEEEEEEEeCCCe-EEEEEECC
Confidence            34678999999999655434 58999984

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=85.86  E-value=0.72  Score=31.27  Aligned_cols=66  Identities=17%  Similarity=0.303  Sum_probs=38.5

Q ss_pred             EeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--ceE--EEeeeEEEecCeEEEeC---CcEEEEeeeCC
Q psy12724         23 IKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--DFV--VSQSYTVNIMDEHVLKG---NSAVLKCHIPS   91 (167)
Q Consensus        23 ~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--~~v--~~g~y~c~~~~~~v~~G---~~a~l~C~~~~   91 (167)
                      .+++.+.|.|.|.|+-++.+ .|+|++++. .+..+..  ...  ..|.|+.... ..+...   +...+.|.+..
T Consensus        15 ~~~~~~~L~C~~~gfyP~~i-~v~W~~~g~-~~~~~~~~~~~~~~~dgty~~~s~-L~v~~~~w~~~~~~sC~V~H   87 (100)
T cd07699          15 EKSGKATLVCLINDFYPGFA-TVQWKVDGA-TVSSGVQTSTTEQQSDNTYSLSSY-LTLTKSDWNKHKVYTCEVTH   87 (100)
T ss_pred             ccCCCcEEEEEEEeEECCCC-EEEEEECCE-ECcccEeccccEECCCCCEEEEEE-EEEcHHHhCCCCeEEEEEEe
Confidence            36788999999999654334 589999853 3322100  011  1466775432 122222   35789999853

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=85.86  E-value=1  Score=30.03  Aligned_cols=32  Identities=13%  Similarity=0.111  Sum_probs=24.7

Q ss_pred             eEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCc
Q psy12724         18 YDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGG   53 (167)
Q Consensus        18 ~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~   53 (167)
                      ....|.+|+++.|+|......    ....|+|++..
T Consensus         8 p~~vV~~G~~VTL~C~~~~~~----~~f~l~k~g~~   39 (94)
T cd05711           8 PSPVVPSGENVTLQCHSDIRF----DRFILYKEGRS   39 (94)
T ss_pred             CCCccCCCCeEEEEEecCCCC----CEEEEEECCCC
Confidence            357889999999999887532    25899998653

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=85.44  E-value=1.3  Score=29.25  Aligned_cols=23  Identities=9%  Similarity=0.294  Sum_probs=18.4

Q ss_pred             EEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         28 AVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        28 ~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +.|.|.+.|+-++  ..|+|+|++.
T Consensus         2 ~~L~C~s~gSkP~--A~I~W~k~~~   24 (82)
T cd05883           2 IELNCTAMASKPA--ATIRWFKGNK   24 (82)
T ss_pred             EEEEEEecCCCCC--CEEEEEECCE
Confidence            5799999887544  6899999864

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=85.10  E-value=1.1  Score=30.14  Aligned_cols=28  Identities=14%  Similarity=0.326  Sum_probs=20.4

Q ss_pred             eCCcEEEEeecCCCC---CCcceeeEEeeCC
Q psy12724         24 KGNAAVFKCNLPSFV---SDHLDVVSWADTD   51 (167)
Q Consensus        24 ~G~~~~l~C~a~~~~---~~~~~~i~W~k~~   51 (167)
                      +|+++.|.|..+..+   ......|.|.|.+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~   31 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLE   31 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEec
Confidence            599999999987653   1223469999974

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=85.07  E-value=2  Score=28.44  Aligned_cols=30  Identities=17%  Similarity=0.180  Sum_probs=22.7

Q ss_pred             EEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         20 VFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        20 ~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      +.+.+|+++.|.|.......  ...+.|.|.+
T Consensus         2 v~~~~G~~vtl~C~~~~~~~--~~~~~W~r~~   31 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNR--SYEKYWCKWG   31 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCC--CcEeEeECCC
Confidence            46889999999999875322  2468999874

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=84.81  E-value=0.63  Score=31.32  Aligned_cols=28  Identities=11%  Similarity=0.367  Sum_probs=21.0

Q ss_pred             eCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         24 KGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      ..+.+.|.|.|.++-++.+ .|+|+|++.
T Consensus        13 ~~~~~~L~C~a~gFyP~~I-~vtW~~dg~   40 (94)
T cd05847          13 TSETIQLLCLISGYTPGTI-EVEWLVDGQ   40 (94)
T ss_pred             CCCCEEEEEEEEeEECCCC-EEEEEECCE
Confidence            4577999999999654434 589999853

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=84.68  E-value=1.8  Score=29.98  Aligned_cols=33  Identities=21%  Similarity=0.406  Sum_probs=23.8

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCC-CcceeeEEee
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVS-DHLDVVSWAD   49 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~-~~~~~i~W~k   49 (167)
                      +..+.+.+|+++.|.|.....+. .....|.|.+
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~   38 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNF   38 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEE
Confidence            56788999999999999765432 1123699964

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=84.64  E-value=2  Score=35.79  Aligned_cols=23  Identities=13%  Similarity=0.462  Sum_probs=17.8

Q ss_pred             cEEEEeecCCCCCCcceeeEEeeC
Q psy12724         27 AAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        27 ~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      .+.|.|.|.|+=+..+ .++|+|+
T Consensus       216 ~~tL~C~A~GFYP~~I-~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSV-AAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCcc-EEEEEec
Confidence            4699999999754433 5899999

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=84.63  E-value=2  Score=28.52  Aligned_cols=28  Identities=25%  Similarity=0.387  Sum_probs=19.7

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      |+++.|.|...+........+.|+|.+.
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~   28 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQF   28 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCC
Confidence            7899999998644322234699999754

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=84.62  E-value=1.1  Score=30.28  Aligned_cols=64  Identities=13%  Similarity=0.311  Sum_probs=38.2

Q ss_pred             eCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--ceEE--EeeeEEEecCeEEEeCC---cEEEEeeeCC
Q psy12724         24 KGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--DFVV--SQSYTVNIMDEHVLKGN---SAVLKCHIPS   91 (167)
Q Consensus        24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--~~v~--~g~y~c~~~~~~v~~G~---~a~l~C~~~~   91 (167)
                      .++.+.|.|.|.++-+..+ .++|+|++..  .....  -.+.  .|.|+.... ..+..++   ...+.|++..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i-~vtW~k~g~~--~~~~~~~~~~~~~dgty~~~s~-L~v~~~~w~~~~~ytC~V~H   85 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPV-TFTWNSGSNS--TSGVKTYPAVLQSGGLYTASSQ-LTVPASEWKGKESFYCKVEH   85 (95)
T ss_pred             CCCcEEEEEEEeeEECCCc-EEEEeECCEE--CCCcEECCCEeCCCCCEEEEEE-EEEeHHHcCCCCcEEEEEEe
Confidence            5678999999999755433 5899998542  21100  0111  366775432 2344443   6778999864

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=84.25  E-value=1  Score=29.97  Aligned_cols=30  Identities=20%  Similarity=0.262  Sum_probs=21.8

Q ss_pred             EEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         21 FVIKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        21 ~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      .|.+|+++.|.|...+.... ...+.|+|..
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~-~~~i~Wy~q~   31 (98)
T cd04984           2 SVSPGETVTITCTGSSGNIS-GNYVNWYQQK   31 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcC-CCCEEEEEEC
Confidence            57899999999998764211 1359998764

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=83.84  E-value=1.4  Score=30.61  Aligned_cols=36  Identities=17%  Similarity=0.270  Sum_probs=25.7

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      ++|....+.+|+++.|.|........ ...+.|+|..
T Consensus         2 ~~~~~~~v~~G~~vtL~C~~~~~~~~-~~~~~WYkQ~   37 (117)
T cd04981           2 VESGPGLVKPGQSLKLSCKASGFTFT-SYGVNWVRQA   37 (117)
T ss_pred             ccCCCeEEcCCCCEEEEEEEeCCCcc-cceEEEEEEC
Confidence            35677889999999999987643210 1258999863

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=82.14  E-value=1.7  Score=29.49  Aligned_cols=28  Identities=18%  Similarity=0.207  Sum_probs=21.3

Q ss_pred             EEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         21 FVIKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        21 ~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      .|.+|+++.|.|...+...   ..+.|+|.+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~---~~v~Wyrq~   29 (104)
T cd05720           2 DAELGQKVELKCEVLNSSP---TGCSWLFQP   29 (104)
T ss_pred             cccCCCeEEEEEEecCCCC---CcEEEEEeC
Confidence            4678999999999865532   259999864

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=82.06  E-value=1.7  Score=29.21  Aligned_cols=27  Identities=15%  Similarity=0.341  Sum_probs=20.3

Q ss_pred             eCCcEEEEeecCCCCC---CcceeeEEeeC
Q psy12724         24 KGNAAVFKCNLPSFVS---DHLDVVSWADT   50 (167)
Q Consensus        24 ~G~~~~l~C~a~~~~~---~~~~~i~W~k~   50 (167)
                      +|+++.|.|.....+.   .....|.|.|.
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~   30 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKL   30 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEe
Confidence            5999999999876531   12357999997

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=81.24  E-value=3.2  Score=28.74  Aligned_cols=36  Identities=14%  Similarity=0.119  Sum_probs=25.1

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCC---CCcceeeEEeeCC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFV---SDHLDVVSWADTD   51 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~---~~~~~~i~W~k~~   51 (167)
                      .|+.+.+.+|+++.|.|......   .+....+.|+|.+
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~   43 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGH   43 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCC
Confidence            46778999999999999764221   1112358999874

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=80.74  E-value=4.6  Score=30.89  Aligned_cols=36  Identities=14%  Similarity=0.233  Sum_probs=26.6

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      .....+.|.+|+++.|.|.-... . ..+.|+|+|...
T Consensus        20 s~~~~v~V~ege~VtLsCs~t~s-~-~~~qVtWkK~~~   55 (189)
T PHA02987         20 SCFVKITVSEHVNVKISCNKTSS-F-NSILITWKKNNK   55 (189)
T ss_pred             ceeEEEEEcCCCCEEEEEecCCC-C-ccceEEEEEcCC
Confidence            45567889999999999997422 1 135799999743

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=80.24  E-value=1.6  Score=30.57  Aligned_cols=77  Identities=16%  Similarity=0.306  Sum_probs=43.8

Q ss_pred             eCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC---ceEE--EeeeEEEecCeEEEeC----CcEEEEeeeCCccC
Q psy12724         24 KGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ---DFVV--SQSYTVNIMDEHVLKG----NSAVLKCHIPSFVA   94 (167)
Q Consensus        24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~---~~v~--~g~y~c~~~~~~v~~G----~~a~l~C~~~~~~~   94 (167)
                      +++.+.|.|.|.++-++.+ .++|+|++. .+.....   ....  .|.|+.... ..+..+    ....+.|.+.+. +
T Consensus        17 ~~~~~tL~Cla~gFyP~~I-~V~W~kng~-~l~~g~~~~~~~~~~~~gTYs~~S~-L~v~~~~w~~~~~~ytC~V~H~-g   92 (115)
T cd05769          17 NKRKATLVCLATGFYPDHV-SLSWKVNGK-EVTDGVATDPQALRENTSTYSISSR-LRVSATEWFNPRNTFTCIVQFY-G   92 (115)
T ss_pred             cCCCcEEEEEEEeEeCCCc-EEEEEECCE-ECCCCcccccceecCCCCeEEEEEE-EEEChHHhccCCCeEEEEEEEe-C
Confidence            5678999999999754423 589999853 3322110   0111  156775432 223332    257899998643 3


Q ss_pred             CcceeEEEEeC
Q psy12724         95 DYVAVESWISD  105 (167)
Q Consensus        95 ~p~p~i~W~k~  105 (167)
                      .+. ...|..-
T Consensus        93 ~~~-~~~~~~~  102 (115)
T cd05769          93 GTD-TDKWQSI  102 (115)
T ss_pred             Ccc-ceeeeee
Confidence            232 3477643

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	167
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		8e-39
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		8e-39
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		8e-39
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		1e-38

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score =  155 bits (393), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 76/105 (72%), Positives = 86/105 (81%), Gaps = 2/105 (1%)
Query: 63  VVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY 122
           VV+Q Y  ++  EHV++GNSAV+KC IPSFVAD+V V SW +D+ E  F       DGKY
Sbjct: 101 VVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGA--EYDGKY 158
Query: 123 LVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
           LVLPSGELHIR+VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Sbjct: 159 LVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 203

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score =  155 bits (393), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 76/105 (72%), Positives = 86/105 (81%), Gaps = 2/105 (1%)
Query: 63  VVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY 122
           VV+Q Y  ++  EHV++GNSAV+KC IPSFVAD+V V SW +D+ E  F       DGKY
Sbjct: 107 VVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGA--EYDGKY 164
Query: 123 LVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
           LVLPSGELHIR+VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Sbjct: 165 LVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 209

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score =  155 bits (393), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 76/105 (72%), Positives = 86/105 (81%), Gaps = 2/105 (1%)
Query: 63  VVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY 122
           VV+Q Y  ++  EHV++GNSAV+KC IPSFVAD+V V SW +D+ E  F       DGKY
Sbjct: 136 VVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGA--EYDGKY 193
Query: 123 LVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
           LVLPSGELHIR+VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Sbjct: 194 LVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 238

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score =  155 bits (391), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 72/105 (68%), Positives = 85/105 (80%)
Query: 63  VVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY 122
           VV QSY     +E+V++GNS V+KC IPS+VAD+V V+ W+  +G   + +    TDGKY
Sbjct: 101 VVIQSYESEADNEYVIRGNSVVMKCEIPSYVADFVFVDLWLDSEGRNYYPNNAAETDGKY 160
Query: 123 LVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
           LVLPSGELHIR+VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Sbjct: 161 LVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 205

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	167
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	6e-25
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-22
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-12
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	7e-04
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	8e-10
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	7e-09
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	8e-04
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-08
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-08
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-08
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	5e-04
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	4e-06
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-05
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-05
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-05
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	3e-05
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	4e-05
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-05
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	5e-05
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-05
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	7e-05
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-04
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-04
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-04
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-04
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-04
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	5e-04
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	5e-04
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	6e-04
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	6e-04
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	9e-04

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 97.7 bits (243), Expect = 6e-25
 Identities = 76/106 (71%), Positives = 86/106 (81%), Gaps = 2/106 (1%)

Query: 62  FVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGK 121
            VV+Q Y  ++  EHV++GNSAV+KC IPSFVAD+V V SW +D+ E  F       DGK
Sbjct: 100 AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEY--DGK 157

Query: 122 YLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
           YLVLPSGELHIR+VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Sbjct: 158 YLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 203

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 92.3 bits (229), Expect = 1e-22
 Identities = 77/106 (72%), Positives = 87/106 (82%), Gaps = 2/106 (1%)

Query: 62  FVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGK 121
            VV+Q Y  ++  EHV++GNSAV+KC IPSFVAD+V V SW +D  EE +    E  DGK
Sbjct: 135 AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD-EEENYFPGAEY-DGK 192

Query: 122 YLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
           YLVLPSGELHIR+VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI
Sbjct: 193 YLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 238

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 74  DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIR 133
              V +G   VL C  P    +     +WI +     + D     + +++   +G L+I 
Sbjct: 111 TVSVRRGQGMVLLCGPPPHSGELSY--AWIFN-EYPSYQD-----NRRFVSQETGNLYIA 162

Query: 134 DVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVI 167
            V   D   +Y C   + +T    L      ++ 
Sbjct: 163 KVEKSDV-GNYTCVVTNTVTNHKVLGPPTPLILR 195

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 28/198 (14%), Positives = 45/198 (22%), Gaps = 75/198 (37%)

Query: 6   VAVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWAD---------------- 49
            A +  +       V V +G   V  C  P    +     +W                  
Sbjct: 98  FAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGEL--SYAWIFNEYPSYQDNRRFVSQE 155

Query: 50  -----------TDGGQYQ-----IDNQDFVVSQSYTVNI------------------MDE 75
                      +D G Y            V+     + +                     
Sbjct: 156 TGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETV 215

Query: 76  HVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGEL 130
              KG +  L+C       P+          W    G+ +                +G L
Sbjct: 216 PAEKGTTVKLECFALGNPVPTI--------LWRRADGKPI-------ARKARRHKSNGIL 260

Query: 131 HIRDVGPED-GYKSYQCR 147
            I +   ED G  SY+C 
Sbjct: 261 EIPNFQQEDAG--SYECV 276

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 55.3 bits (133), Expect = 8e-10
 Identities = 16/123 (13%), Positives = 37/123 (30%), Gaps = 21/123 (17%)

Query: 49  DTDGGQYQ---------IDNQDFVVSQSYTVNIMDE-----HVLKGNSAVLKCHIPSFVA 94
             D G YQ         + +++  +   +      E      + +G   +  C  P    
Sbjct: 71  AKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYP 130

Query: 95  DYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTG 154
                  W+ ++          +   +++   +G L+I      D   +Y C     +  
Sbjct: 131 ALSY--RWLLNEFPNFI----PADGRRFVSQTTGNLYIAKTEASDL-GNYSCFATSHIDF 183

Query: 155 ETR 157
            T+
Sbjct: 184 ITK 186

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 52.6 bits (126), Expect = 7e-09
 Identities = 22/142 (15%), Positives = 45/142 (31%), Gaps = 24/142 (16%)

Query: 41  HLDVVSWADTDGGQYQ---------IDNQDFVVSQSYTVNIMDEH-----VLKGNSAVLK 86
                   +   G+YQ           +    +  S +     E+     V +G    L+
Sbjct: 78  DFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQ 137

Query: 87  CHIP-SFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQ 145
           C+ P    +  +    W+S   E +      + D +     +G+L+  +V  +D    Y 
Sbjct: 138 CNPPPGLPSPVI---FWMSSSMEPI------TQDKRVSQGHNGDLYFSNVMLQDMQTDYS 188

Query: 146 CRTKHRLTGETRLSATKGRLVI 167
           C  +   T   +        V+
Sbjct: 189 CNARFHFTHTIQQKNPFTLKVL 210

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 33/114 (28%)

Query: 51  DGGQYQ--IDNQDFVVSQSYTVNIM----------DEHVLKGNSAVLKCHI-----PSFV 93
           D G+Y     N+   +  + +V +           +  +  G    L C       P+  
Sbjct: 286 DSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTV- 344

Query: 94  ADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQC 146
                   W+ + GE L      +       +    +  RD          YQC
Sbjct: 345 -------QWMVN-GEPL----QSAPPNPNREVAGDTIIFRDTQISSRAV--YQC 384

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 12/105 (11%), Positives = 29/105 (27%), Gaps = 16/105 (15%)

Query: 69  TVNIMDEHVLKGNSAVLKCHIPSF------------VADYVAVESWISDQGEELFVDMTE 116
           T+     +V +G   +L  H                V     +  ++    +        
Sbjct: 3   TIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGP--- 59

Query: 117 STDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSAT 161
           +  G+ ++ P+  L I+++   D    Y              +  
Sbjct: 60  AYSGREIIYPNASLLIQNIIQNDT-GFYTLHVIKSDLVNEEATGQ 103

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 51.1 bits (122), Expect = 3e-08
 Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 4/102 (3%)

Query: 62  FVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGK 121
                +      ++  ++G    L C +P+       + +W                D +
Sbjct: 97  KTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPK--PLITWKKRLSGADPNADVTDFDRR 154

Query: 122 YLVLPSGELHIRDVGPEDG--YKSYQCRTKHRLTGETRLSAT 161
               P G L+   V  ED      Y C  K+    E  +   
Sbjct: 155 ITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVE 196

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 51.0 bits (122), Expect = 3e-08
 Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 24/126 (19%)

Query: 36  SFVSDHLDVVSWADTDGGQYQ----IDNQDFVVSQSYTVNIM----------DEHVLKGN 81
           S +  ++        D G YQ    + +   ++S++  V +                 G+
Sbjct: 78  SLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGD 137

Query: 82  SAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-G 140
           + +LKC +       +    W  +  ++L        D + +VLPSG L I  + P D G
Sbjct: 138 TVLLKCEVIGDPMPTI---HWQKN-QQDLNP---IPGDSRVVVLPSGALQISRLQPGDSG 190

Query: 141 YKSYQC 146
              Y+C
Sbjct: 191 --VYRC 194

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 23/84 (27%)

Query: 69  TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
             +  + +  +      +C +     P+         +W+ + G+ +           + 
Sbjct: 316 LNHPSNLYAYESMDIEFECAVSGKPVPTV--------NWMKN-GDVV------IPSDYFQ 360

Query: 124 VLPSGELHIRDVGPED-GYKSYQC 146
           ++    L I  V   D G+  YQC
Sbjct: 361 IVGGSNLRILGVVKSDEGF--YQC 382

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 77  VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVG 136
           V +G   VL C  P    D ++   W+ +    +F+ M +    +++   +G L+I +V 
Sbjct: 20  VKEGKGMVLLCDPPYHFPDDLSY-RWLLN-EFPVFITMDKR---RFVSQTNGNLYIANVE 74

Query: 137 PEDGYKSYQCRTKHRLTGETRLSA 160
             D   +Y C        ++  S 
Sbjct: 75  ASDK-GNYSCFVSSPSITKSVFSK 97

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 19/101 (18%)

Query: 53  GQY--QIDNQDFV-VSQSYTVNIMDEHVLKGNSAVLKCH----IPSFVADYVAVESWISD 105
           G+Y  ++D   F   +        D +V +G +A LKC     + S         SWI+ 
Sbjct: 326 GRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSLTSV--------SWITP 377

Query: 106 QGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQC 146
            G    V    +   +  VL  G L+  +V  +D    Y C
Sbjct: 378 NGT---VMTHGAYKVRIAVLSDGTLNFTNVTVQDT-GMYTC 414

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 11/74 (14%)

Query: 74  DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIR 133
           D ++ +G  A LKC         ++   W+   G  L      S   +  VL  G L+  
Sbjct: 361 DLNISEGRMAELKCR-----TPPMSSVKWLLPNGTVL---SHASRHPRISVLNDGTLNFS 412

Query: 134 DVGPED-GYKSYQC 146
            V   D G   Y C
Sbjct: 413 HVLLSDTG--VYTC 424

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 74  DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIR 133
              V +G++    C       D      W+S +   +    +  ++G+  V P G L +R
Sbjct: 394 QVFVDEGHTVQFVC---RADGDPPPAILWLSPRKHLV----SAKSNGRLTVFPDGTLEVR 446

Query: 134 DVGPED-GYKSYQC 146
               +D G  +Y C
Sbjct: 447 YAQVQDNG--TYLC 458

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 42.4 bits (100), Expect = 4e-06
 Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 23/99 (23%)

Query: 69  TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
                ++ +    +A+LKC       P          SW+ + G           D +  
Sbjct: 12  LQGPANQTLAVDGTALLKCKATGDPLPVI--------SWLKE-GFTF-----PGRDPRAT 57

Query: 124 VLPSGELHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
           +   G L I+++   D G  +Y C       GET  SA 
Sbjct: 58  IQEQGTLQIKNLRISDTG--TYTCVATSSS-GETSWSAV 93

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 28/166 (16%), Positives = 49/166 (29%), Gaps = 34/166 (20%)

Query: 19  DVFVIKGNAAVFKCNLPSFV--------------SDHLDVVSWADTDGGQYQIDNQD--- 61
           D+ V  G+     C  P FV               +         T+ G+Y   N+    
Sbjct: 45  DLIVRVGDEIRLLCTDPGFVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLS 104

Query: 62  -----FV-VSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMT 115
                FV       +     +  + N  +++C +       V   S    QG+ L     
Sbjct: 105 NSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDP---EVTNYSLKGCQGKPL----- 156

Query: 116 ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSAT 161
              D +++  P   + I+ V          C       G++ LS  
Sbjct: 157 -PKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSV--DQEGKSVLSEK 199

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 22/95 (23%), Positives = 31/95 (32%), Gaps = 23/95 (24%)

Query: 73  MDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS 127
           +++ V    + VL C       P+          W  D G  +      + D +   L +
Sbjct: 16  VNQTVAVDGTFVLSCVATGSPVPTI--------LWRKD-GVLV-----STQDSRIKQLEN 61

Query: 128 GELHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
           G L IR     D G   Y C       GE   SA 
Sbjct: 62  GVLQIRYAKLGDTG--RYTCIASTPS-GEATWSAY 93

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 21/101 (20%)

Query: 67  SYTVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGK 121
           ++   +  +   +G  A + C +     P+         SW+    EE+    T  +D +
Sbjct: 4   TFREVVSPQEFKQGEDAEVVCRVSSSPAPAV--------SWLYH-NEEV----TTISDNR 50

Query: 122 YLVLPSGELHIRDVGPED-GYKSYQCRTKHRLTGETRLSAT 161
           + +L +  L I ++   D G   Y+C  +    GE      
Sbjct: 51  FAMLANNNLQILNINKSDEGI--YRCEGRVEARGEIDFRDI 89

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 21/125 (16%), Positives = 35/125 (28%), Gaps = 26/125 (20%)

Query: 51  DGGQYQ--IDNQDFVVSQSYTVNIMDE-----------HVLKGNSAVLKCHIPSFVADYV 97
           + G Y+          S +  + + D             V +   A+L C +   V +  
Sbjct: 62  NTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLE-- 119

Query: 98  AVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQCRTKHRLTGET 156
           A  S +  +G  L           Y   P     I            YQC     + G  
Sbjct: 120 AGVSLVRVRGRPL------MRHTNYSFSPWHGFTIHRAKFIQSQD--YQCSA--LMGGRK 169

Query: 157 RLSAT 161
            +S +
Sbjct: 170 VMSIS 174

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 41.1 bits (96), Expect = 5e-05
 Identities = 22/125 (17%), Positives = 34/125 (27%), Gaps = 24/125 (19%)

Query: 51  DGGQYQ--IDNQDFVVSQSYTVNIMD-----------EHVLKGNSAVLKCHIPSFVADYV 97
           + G Y+          S +  + + D             V++G  AVL C I        
Sbjct: 62  NTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITD--PALK 119

Query: 98  AVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQCRTKHRLTGET 156
              S + + G ++           Y   P     IR     D     Y C+T       T
Sbjct: 120 DSVSLMREGGRQV------LRKTVYFFSPWRGFIIRKAKVLDSNT--YVCKTMVNGREST 171

Query: 157 RLSAT 161
                
Sbjct: 172 STGIW 176

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 39.5 bits (92), Expect = 5e-05
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 18/92 (19%)

Query: 61  DFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFV-DMTESTD 119
            F ++Q+ TV       ++G +A+L C +       +    W +   + L+  D     D
Sbjct: 9   QFPLTQNVTV-------VEGGTAILTCRVDQNDNTSL---QWSNPAQQTLYFDDKKALRD 58

Query: 120 GKYLVLPSGE----LHIRDVGPED-GYKSYQC 146
            +  ++ +      + + DV   D G   Y C
Sbjct: 59  NRIELVRASWHELSISVSDVSLSDEGQ--YTC 88

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 41.0 bits (96), Expect = 6e-05
 Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 34/130 (26%)

Query: 51  DGGQYQ--IDNQD-FVVSQSYTVNI----------MDEHVLKGNSAVLKCHI-----PSF 92
           D G Y+    +        +  + I            +   +G  A + C +     P+ 
Sbjct: 71  DAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAV 130

Query: 93  VADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQCRTKHR 151
                   SW+    EE+    T  +D ++ +L +  L I ++   D G   Y+C  +  
Sbjct: 131 --------SWLYH-NEEV----TTISDNRFAMLANNNLQILNINKSDEGI--YRCEGRVE 175

Query: 152 LTGETRLSAT 161
             GE      
Sbjct: 176 ARGEIDFRDI 185

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 36/118 (30%)

Query: 50  TDGGQY--QIDNQDFVVSQSYTVNI------------MDEHVLKGNSAVLKCHI-----P 90
            D G Y   +   +       TVN+              +   +G  AV+ C +     P
Sbjct: 72  DDAGIYKCVVTA-EDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPP 130

Query: 91  SFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPED-GYKSYQCR 147
           +          W          D+    D +++VL +  L IR +   D G  +Y+C 
Sbjct: 131 TI--------IWKHKGR-----DVILKKDVRFIVLSNNYLQIRGIKKTDEG--TYRCE 173

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 14/78 (17%)

Query: 74  DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL----PSGE 129
              +  G S    C +     D     SW S  GE+L          +  V+     S  
Sbjct: 11  QGEISVGESKFFLCQVAGDAKDKDI--SWFSPNGEKL-----SPNQQRISVVWNDDDSST 63

Query: 130 LHIRDVGPED-GYKSYQC 146
           L I +   +D G   Y+C
Sbjct: 64  LTIYNANIDDAGI--YKC 79

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 21/85 (24%)

Query: 69  TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
                 +   +G  AV+ C +     P+          W     +     +    D +++
Sbjct: 104 KNAPTPQEFKEGEDAVIVCDVVSSLPPTI--------IWKHKGRD-----VILKKDVRFI 150

Query: 124 VLPSGELHIRDVGPED-GYKSYQCR 147
           VL +  L IR +   D G   Y+C 
Sbjct: 151 VLSNNYLQIRGIKKTDEGT--YRCE 173

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 77  VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFV--DMTESTDGKYLVLPSGELHIRD 134
           V KG +A+L+C  P           WI D G  L     M+     +  ++  G L I +
Sbjct: 120 VAKGETALLECGPPK--GIPEPTLIWIKD-GVPLDDLKAMSFGASSRVRIVDGGNLLISN 176

Query: 135 VGPED-GYKSYQC 146
           V P D G  +Y+C
Sbjct: 177 VEPIDEG--NYKC 187

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 19/126 (15%)

Query: 36  SFVSDHLDVVSWADTDGGQYQI-----DNQDFVVSQSYTVNIM----DEHVLKGNSAVLK 86
           +      +    +D   G+Y             +       +      EH+ +G +A+L 
Sbjct: 45  ALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLV 104

Query: 87  CHIPSF--VADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGY 141
           C   S   V D+    +W      E    +   ++ ++ V  S    ELHI ++  E   
Sbjct: 105 CKSESVPPVTDW----AWYKITDSE-DKALMNGSESRFFVSSSQGRSELHIENLNMEADP 159

Query: 142 KSYQCR 147
             Y+C 
Sbjct: 160 GQYRCN 165

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 20/125 (16%), Positives = 34/125 (27%), Gaps = 11/125 (8%)

Query: 41  HLDVVSWADTDGGQYQIDNQDFVVSQSYTVNIM----------DEHVLKGNSAVLKCHIP 90
            ++ VS+ +          +   + +   V I              +  G    +KC + 
Sbjct: 57  TMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVA 116

Query: 91  SFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKH 150
                       +         +  E  D K L   S E+    V  ED  K   CR K 
Sbjct: 117 DVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPV-IEDIGKVLVCRAKL 175

Query: 151 RLTGE 155
            +   
Sbjct: 176 HIDEM 180

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 23/85 (27%)

Query: 69  TVNIMDEHVLKGNSAVLKCHI-----PSFVADYVAVESWISDQGEELFVDMTESTDGKYL 123
           T   ++  +++G  AVL C       PS         SWI      L        + +  
Sbjct: 104 TRPPINVKIIEGLKAVLPCTTMGNPKPSV--------SWIKG-DSAL------RENSRIA 148

Query: 124 VLPSGELHIRDVGPED-GYKSYQCR 147
           VL SG L I +V  ED G   Y+C 
Sbjct: 149 VLESGSLRIHNVQKEDAGQ--YRCV 171

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 36.9 bits (85), Expect = 6e-04
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 67  SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFV-DMTESTDGKYLVL 125
           S T +     V +G +  LKC         +    W++  G  +F+ +     + KY +L
Sbjct: 3   SLTNHTETITVEEGQTLTLKCVTSLRKNSSL---QWLTPSGFTIFLNEYPVLKNSKYQLL 59

Query: 126 PS----GELHIRDVGPED-GYKSYQC 146
                   + + +V  +D G   Y+C
Sbjct: 60  HHSANQLSITVPNVTLQDEG--VYKC 83

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 19/74 (25%), Positives = 25/74 (33%), Gaps = 12/74 (16%)

Query: 74  DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIR 133
           D  V  G  AV++C  P          SW  D G  L          + + +  G+L I 
Sbjct: 120 DVMVAVGEPAVMECQPPR--GHPEPTISWKKD-GSPL------DDKDERITIRGGKLMIT 170

Query: 134 DVGPED-GYKSYQC 146
                D G   Y C
Sbjct: 171 YTRKSDAG--KYVC 182

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 37.4 bits (86), Expect = 9e-04
 Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 35/168 (20%)

Query: 19  DVFVIKGNAAVFKCNLPSFVS---------------DHLDVVSWADTDGGQYQIDNQDFV 63
           ++ V  G+     C  P FV                +         T  G Y   N + +
Sbjct: 21  ELIVEAGDTLSLTCIDPDFVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGL 80

Query: 64  VSQSY---------TVNIMDEHVLKGNSAVLKCHIPSFVADY-VAVESWISDQGEELFVD 113
            S  Y          +  +     + + A+++C     + D  V+  S I   G+ L   
Sbjct: 81  TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCP----LTDPQVSQYSLIECDGKSL--- 133

Query: 114 MTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSAT 161
               TD  ++  P   + I++V         +C  +   T       T
Sbjct: 134 ---PTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFT 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.86
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.86
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.84
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.84
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.83
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.82
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.82
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.82
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.82
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.82
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.81
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.81
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.81
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.8
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.8
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.8
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.8
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.79
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.79
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.79
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.79
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.79
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.79
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.78
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.78
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.77
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.77
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.77
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.77
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.77
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.77
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.77
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.77
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.77
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.76
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.76
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.76
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.76
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.76
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.76
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.76
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.76
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.76
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.75
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.75
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.75
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.75
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.75
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.75
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.75
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.74
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.74
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.74
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.74
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.74
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.74
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.73
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.73
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.73
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.73
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.73
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.73
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.73
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.73
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.72
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.72
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.72
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.72
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.71
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.71
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.71
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.7
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.7
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.7
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.7
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.69
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.69
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.69
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.69
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.69
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.69
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.69
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.69
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.69
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.69
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.68
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.67
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.67
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.67
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.67
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.67
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.67
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.66
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.66
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.66
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.66
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.66
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.66
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.66
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.66
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.66
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.66
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.66
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.66
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.66
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.66
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.66
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.65
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.65
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.65
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.65
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.65
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.64
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.64
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.64
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.64
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.64
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.64
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.64
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.64
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.64
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.63
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.63
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.63
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.63
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.63
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.62
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.62
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.62
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.62
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.62
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.62
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.61
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.61
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.61
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.61
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.61
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.61
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.6
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.6
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.6
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.6
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.6
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.6
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.6
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.6
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.6
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.59
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.59
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.59
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.59
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.59
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.59
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.58
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.58
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.58
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.58
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.57
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.57
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.57
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.57
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.57
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.57
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.57
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.57
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.56
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.56
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.55
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.55
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.55
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.55
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.55
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.55
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.55
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.55
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.55
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.54
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.54
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.54
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.54
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.54
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.54
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.53
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.53
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.53
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.53
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.52
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.52
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.52
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.52
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.52
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.52
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.52
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.51
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.51
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.51
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.5
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.5
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.5
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.5
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.5
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.49
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.49
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.49
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.49
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.48
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.48
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.47
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.47
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.47
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.47
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.47
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.47
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.47
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.47
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.46
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.46
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.46
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.46
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.46
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.46
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.45
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.45
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.45
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.45
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.45
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.45
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.45
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.45
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.45
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.45
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.44
1he7_A	126	High affinity nerve growth factor receptor; transf	99.44
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.44
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.43
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.43
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.43
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.43
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.43
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.42
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.41
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.41
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.41
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.4
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.4
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.4
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.4
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.4
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.39
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.39
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.39
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.39
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.38
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.38
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.37
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.37
2ens_A	96	Advanced glycosylation END product-specific recept	99.37
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.36
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.36
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.36
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.35
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.35
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.34
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.34
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.34
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.33
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.33
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.33
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.32
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.32
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.32
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.32
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.31
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.31
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.31
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.31
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.3
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.29
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.29
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.28
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.28
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.27
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.27
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.27
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.27
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.27
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	99.26
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.26
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.25
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.25
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.25
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.25
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.24
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.24
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.24
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.24
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.24
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.23
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.23
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.23
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	99.22
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.22
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.22
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.22
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.22
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.21
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.21
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	99.21
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.21
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.21
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.2
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.2
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.2
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.2
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	99.2
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.2
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.19
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.19
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.19
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.19
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.18
3khq_A	133	B-cell antigen receptor complex-associated protei	99.18
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.18
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.18
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.18
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	99.17
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.17
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.17
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.16
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.16
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.16
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.15
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.14
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.14
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.14
1xt5_A	135	Variable region-containing chitin-binding protein	99.13
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	99.13
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.12
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.12
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.12
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	99.12
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.12
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.12
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.11
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	99.11
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	99.11
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.11
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.1
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	99.1
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.1
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	99.1
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.1
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.1
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.1
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	99.1
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.09
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.09
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.09
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.09
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.08
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.08
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	99.08
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	99.08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.08
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.07
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.07
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	99.07
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.07
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	99.07
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.07
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.06
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.06
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.06
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.06
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.06
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.05
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	99.05
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.05
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	99.05
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	99.05
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.04
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.04
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.04
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.04
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.04
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.03
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.03
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.03
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.03
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	99.02
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.02
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.02
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.02
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	99.02
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	99.02
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	99.02
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.01
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.01
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.01
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.01
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	98.57
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.01
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.01
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.01
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.0
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.0
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	99.0
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.0
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.0
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	99.0
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.0
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	98.99
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	98.99
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	98.99
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.99
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.99
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.98
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.98
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.98
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	98.98
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	98.98
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.98
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.98
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	98.98
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	98.97
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.97
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.97
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.97
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	98.97
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.97
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	98.97
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	98.97
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	98.96
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.96
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	98.96
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	98.96
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.96
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.96
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	98.96
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.96
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.96
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.96
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.96
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.95
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.95
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	98.95
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.95
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.94
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.94
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	98.94
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	98.93
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.93
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.93
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.93
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.93
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.92
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	98.92
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	98.92
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	98.92
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.91
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.91
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.91
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.91
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	98.9
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	98.9
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.89
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.89
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.89
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.88
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	98.88
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	98.88
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	98.88
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	98.88
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.88
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.88
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.88
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	98.88
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.88
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.87
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	98.87
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.87
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.87
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.87
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	98.86
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.86
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	98.86
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	98.85
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.85
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	98.85
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.84
3kg5_A	134	B-cell antigen receptor complex-associated protei	98.83
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.82
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.82
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.82
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.81
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	98.81
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	98.8

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.86  E-value=6.7e-21  Score=140.55  Aligned_cols=134  Identities=19%  Similarity=0.390  Sum_probs=104.1

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc-----------eE--------EEeeeEEEe
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD-----------FV--------VSQSYTVNI   72 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~-----------~v--------~~g~y~c~~   72 (167)
                      .+...|.+..+.+|+++.|.|.+.+.+..  +.+.|++.++..+..+..+           .+        ..|.|+|.+
T Consensus         4 ~v~~~p~~~~v~~G~~v~l~C~~~~~~~~--~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (191)
T 1epf_A            4 QVDIVPSQGEISVGESKFFLCQVAGDAKD--KDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (191)
T ss_dssp             CEEEESSSEEEETTCCEEEEEEECCCSCC--CEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEecCCCcEEcCCCCEEEEEECCCCCCC--ceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence            46788899999999999999999987632  5799999656665532211           11        279999986


Q ss_pred             cC--------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc
Q psy12724         73 MD--------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP  126 (167)
Q Consensus        73 ~~--------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~  126 (167)
                      .+                          ..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+..    ..+.++.+..
T Consensus        82 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g---~p~~~v~W~~~~-~~~~~----~~~~~~~~~~  153 (191)
T 1epf_A           82 TAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVS---SLPPTIIWKHKG-RDVIL----KKDVRFIVLS  153 (191)
T ss_dssp             EETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEEC---SSCCEEEEEETT-EEGGG----GCCTTEEECT
T ss_pred             EcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECC---CCCCEEEEEECC-EEeec----cCCceEEEec
Confidence            32                          23467999999999984   588999999997 45422    2456888888


Q ss_pred             CCeEEEeecCcCCCCcceEEEeeecCcceE
Q psy12724        127 SGELHIRDVGPEDGYKSYQCRTKHRLTGET  156 (167)
Q Consensus       127 ~g~L~I~~v~~~D~~G~Y~C~a~n~~~~~~  156 (167)
                      ++.|.|.+++.+|+ |.|+|.|.|...++.
T Consensus       154 ~~~L~i~~~~~~d~-G~Y~C~a~n~~~~~~  182 (191)
T 1epf_A          154 NNYLQIRGIKKTDE-GTYRCEGRILARGEI  182 (191)
T ss_dssp             TSCEEETTCCGGGC-EEEEEEEEEGGGTEE
T ss_pred             CCeEEECCCChhhC-EEEEEEEEEecceeE
Confidence            99999999999999 999999999885544

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.84  E-value=1.3e-20  Score=143.54  Aligned_cols=128  Identities=14%  Similarity=0.159  Sum_probs=84.1

Q ss_pred             eEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCcee---e---------e------------cCCc-eE--------E
Q psy12724         18 YDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQY---Q---------I------------DNQD-FV--------V   64 (167)
Q Consensus        18 ~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~---~---------~------------~~~~-~v--------~   64 (167)
                      +++++..|+++.|.|......+.+.+.|+|+|++....   .         .            +... .+        .
T Consensus         1 q~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   80 (203)
T 4fa8_A            1 QAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH   80 (203)
T ss_dssp             -CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHH
Confidence            45789999999999964332221135799999743110   0         0            0000 11        2


Q ss_pred             EeeeEEEecC-------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCC
Q psy12724         65 SQSYTVNIMD-------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTD  119 (167)
Q Consensus        65 ~g~y~c~~~~-------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~  119 (167)
                      +|.|+|.+.+                         ..+.+|+++.|.|.+.|   .|.|.|+|+|+++....+.   ..+
T Consensus        81 ~G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G---~P~P~v~W~~~~~~~~~~~---~~~  154 (203)
T 4fa8_A           81 DGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNA---FPHPHVQWLMPEGVEPAPT---AAN  154 (203)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEE---ESCCEEEECCC--------------
T ss_pred             CeEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCC---CCCCEEEEEECCeeecCcc---ccc
Confidence            7999998743                         12347999999999984   5999999998875433332   145


Q ss_pred             ceEEEccCCeEEE---eecCcCCCCcceEEEeeecC
Q psy12724        120 GKYLVLPSGELHI---RDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       120 ~r~~~~~~g~L~I---~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +|+.+..+|.|.|   .+++.+|+ |.|+|+|+|..
T Consensus       155 ~r~~~~~~g~l~il~i~~v~~~D~-G~YtC~A~N~~  189 (203)
T 4fa8_A          155 GGVMKEKDGSLSVAVDLSLPKPWH-LPVTCVGKNDK  189 (203)
T ss_dssp             -CCEECTTSCEEEEEEEEECSSCC-CCEEEEEESSS
T ss_pred             ceEEEeCCCCEEEEEECCCCHHHC-EEEEEEEEcCC
Confidence            7888889997665   59999998 99999999998

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.84  E-value=3.8e-20  Score=140.88  Aligned_cols=127  Identities=18%  Similarity=0.228  Sum_probs=90.4

Q ss_pred             eeeceeeEEeEEEEEeCCcEEEEeecCC-CCCCcceeeEEeeCCCceeeec--------C-Cc--eE--------EEeee
Q psy12724          9 ISQYYEAQVYDVFVIKGNAAVFKCNLPS-FVSDHLDVVSWADTDGGQYQID--------N-QD--FV--------VSQSY   68 (167)
Q Consensus         9 ~~~~~~~~~~~~~v~~G~~~~l~C~a~~-~~~~~~~~i~W~k~~~~~~~~~--------~-~~--~v--------~~g~y   68 (167)
                      +.++|.... +..|.+|+.+.|.|.+.+ .|.   |.|+|+|++. .+.++        . ..  .+        .+|.|
T Consensus         2 ~~p~~~~~~-~~~v~eg~~v~l~c~~~~~~P~---p~i~W~kng~-~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y   76 (207)
T 3rbs_A            2 IDPFTKSEL-AVEILEKGQVRFWMQAEKLSGN---AKVNYIFNEK-EIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY   76 (207)
T ss_dssp             ----CCEEE-EEEECGGGCEEEEEECSCCCSC---CEEEEEETTE-EECSSSSCEEEECTTTCEEEEEESCCCGGGCEEE
T ss_pred             CCCeeecCC-ceEEEeCCeEEEEEEEecCCCC---CEEEEEECCE-ECccCCCEEEEEeCCCCEEEEEECCCChhhCEEE
Confidence            345566544 689999999999999965 343   5899999854 44321        1 01  12        27999


Q ss_pred             EEEecC-------------------------------------------eEEEeCCcEEEEeeeCCccCC-cceeEEEEe
Q psy12724         69 TVNIMD-------------------------------------------EHVLKGNSAVLKCHIPSFVAD-YVAVESWIS  104 (167)
Q Consensus        69 ~c~~~~-------------------------------------------~~v~~G~~a~l~C~~~~~~~~-p~p~i~W~k  104 (167)
                      +|.+.|                                           ..+.+|+++.|.|.+.   |. |.|.++|+|
T Consensus        77 ~C~a~Ng~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v~---g~~P~p~i~W~k  153 (207)
T 3rbs_A           77 TFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVA---NIKKETHIVWYK  153 (207)
T ss_dssp             EEEEEETTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEEE---SCCTTCEEEEEE
T ss_pred             EEEEECCCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEEe---CCCCCCEEEEEE
Confidence            994321                                           2456799999999997   55 899999999


Q ss_pred             CCCeeeEEeeeecCCceEEEccCC--eEEEeecCcCCCCcceEEEeeecC
Q psy12724        105 DQGEELFVDMTESTDGKYLVLPSG--ELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       105 ~~~~~l~~~~~~~~~~r~~~~~~g--~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |+ ..+.+      +.++.. .+|  .|.|.+++.+|+ |.|+|.|.|..
T Consensus       154 ~g-~~l~~------~~~~~~-~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~  194 (207)
T 3rbs_A          154 DE-REISV------DEKHDF-KDGICTLLITEFSKKDA-GIYEVILKDDR  194 (207)
T ss_dssp             TT-EEECC------CCCCCC-SSEEEEEEETTCCGGGC-EEEEEEEEETT
T ss_pred             CC-EECCC------CCceEc-CCCEEEEEECCCCcccC-EEEEEEEEcCC
Confidence            97 56632      334432 333  699999999999 99999999998

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.83  E-value=7.8e-20  Score=134.67  Aligned_cols=127  Identities=24%  Similarity=0.408  Sum_probs=99.2

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc--------eE--------EEeeeEEEecC
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD--------FV--------VSQSYTVNIMD   74 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~--------~v--------~~g~y~c~~~~   74 (167)
                      +.|...+.+..+.+|+++.|.|.+.+.+.   +.+.|+|++. .+.....+        .+        ..|.|+|.+.+
T Consensus         8 P~i~~~~~~~~~~~G~~v~l~C~~~~~p~---~~i~W~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (192)
T 2iep_A            8 PVITTPLETVDALVEEVATFMCAVESYPQ---PEISWTRNKI-LIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANN   83 (192)
T ss_dssp             EEESSCCCEEEEETTSCEEEECCEEEESC---CEEEEEETTE-ECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEEC
T ss_pred             ceeecCccceeeeCCCcEEEEeeCCCCCC---CeEEEEECCE-EccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEc
Confidence            45777888899999999999999987765   3799999853 33221111        11        27999998632


Q ss_pred             --------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC
Q psy12724         75 --------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG  128 (167)
Q Consensus        75 --------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g  128 (167)
                                                ..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.      ...++.+..++
T Consensus        84 ~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g---~p~~~v~W~~~~-~~~~------~~~~~~~~~~~  153 (192)
T 2iep_A           84 GVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMG---NPKPSVSWIKGD-SALR------ENSRIAVLESG  153 (192)
T ss_dssp             SSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEE---ESCCEEEEEETT-EECC------CCSSEEECTTS
T ss_pred             CCCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEec---cCCceEEEEeCC-EEcc------CCCcEEEecCC
Confidence                                      34568999999999974   488899999997 4553      35678888889


Q ss_pred             eEEEeecCcCCCCcceEEEeeecC
Q psy12724        129 ELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       129 ~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .|.|.+++.+|+ |.|+|.|.|..
T Consensus       154 ~L~i~~~~~~d~-G~Y~C~a~n~~  176 (192)
T 2iep_A          154 SLRIHNVQKEDA-GQYRCVAKNSL  176 (192)
T ss_dssp             CEEESSCCGGGC-EEEEEEEEETT
T ss_pred             cEEEecCChhhC-EEEEEEEEcCC
Confidence            999999999999 99999999987

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.82  E-value=1.7e-19  Score=135.93  Aligned_cols=142  Identities=15%  Similarity=0.245  Sum_probs=101.2

Q ss_pred             eeeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec---------CCce-E---------EEeeeE
Q psy12724          9 ISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID---------NQDF-V---------VSQSYT   69 (167)
Q Consensus         9 ~~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~---------~~~~-v---------~~g~y~   69 (167)
                      ..+.|...+.+..+.+|+++.|.|.+.+.|.   +.+.|+|++. .+..+         +... +         ..|.|+
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~---~~v~W~k~~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~   80 (212)
T 2yd6_A            5 TPPRFTRTPVDQTGVSGGVASFICQATGDPR---PKIVWNKKGK-KVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYE   80 (212)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESC---CEEEEEETTE-ECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEE
T ss_pred             CCCeEEeCcceeEEecCCeEEEEEEEeeCCC---CEEEEEECCc-CCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEE
Confidence            3466888899999999999999999987765   4799999854 22211         0110 1         268999


Q ss_pred             EEecC--------------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeec
Q psy12724         70 VNIMD--------------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTES  117 (167)
Q Consensus        70 c~~~~--------------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~  117 (167)
                      |.+.+                                ..+.+|+++.|.|.+.   +.|.|.++|+|++ ..+...   .
T Consensus        81 C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~---g~p~p~v~W~~~g-~~l~~~---~  153 (212)
T 2yd6_A           81 CVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAAS---GNPDPEITWFKDF-LPVDTS---N  153 (212)
T ss_dssp             EEEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEE---CSSCCEEEEEETT-EEC-------
T ss_pred             EEEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEec---CCCCCeEEEEECC-ccccCc---C
Confidence            97632                                2345699999999997   4589999999997 565432   1


Q ss_pred             CCceEEEcc---CCeEEEeecCcCCCCcceEEEeeecC----cceEEEeeeC
Q psy12724        118 TDGKYLVLP---SGELHIRDVGPEDGYKSYQCRTKHRL----TGETRLSATK  162 (167)
Q Consensus       118 ~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~C~a~n~~----~~~~~l~~~~  162 (167)
                      ...++....   .+.|.|.+++.+|+ |.|+|.|.|..    +..+.|.+.+
T Consensus       154 ~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~N~~G~~~s~~a~l~~~~  204 (212)
T 2yd6_A          154 NNGRIKQLRSESIGALQIEQSEESDQ-GKYECVATNSAGTRYSAPANLYVRG  204 (212)
T ss_dssp             --CCEEEEEETTEEEEEECSCCGGGC-EEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CCceEEEEecCCeEEEEEcCCCcccC-EEEEEEEECCCCccccccccEEEEe
Confidence            235565543   36899999999998 99999999987    3345555543

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.82  E-value=1.1e-19  Score=133.99  Aligned_cols=128  Identities=19%  Similarity=0.333  Sum_probs=97.8

Q ss_pred             eeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecC----------Cc-eE--------EEeeeEE
Q psy12724         10 SQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN----------QD-FV--------VSQSYTV   70 (167)
Q Consensus        10 ~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~----------~~-~v--------~~g~y~c   70 (167)
                      .+.|...+.+..+.+|+++.|.|.+.+.+.   +.+.|+|++. .+....          .. .+        ..|.|+|
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   80 (194)
T 2a38_A            5 APTFTQPLQSVVVLEGSTATFEAHISGFPV---PEVSWFRDGQ-VISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSL   80 (194)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESC---CEEEEEESSS-BCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CCeEEccCCceEEECCCEEEEEEEEEecCC---CEEEEEECCE-EcccccCCceEEEeCCCEEEEEECCCCcccCEEEEE
Confidence            456888889999999999999999987765   3799999854 332211          00 11        2799999


Q ss_pred             EecC----------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceE
Q psy12724         71 NIMD----------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY  122 (167)
Q Consensus        71 ~~~~----------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~  122 (167)
                      .+.+                            ..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.      ...++
T Consensus        81 ~~~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g---~p~~~v~W~~~~-~~~~------~~~~~  150 (194)
T 2a38_A           81 KATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTG---IPTPVVKFYRDG-AEIQ------SSLDF  150 (194)
T ss_dssp             EEEETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEE---ESCCEEEEEETT-EECC------CSSSE
T ss_pred             EEEcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEE---ecCCeEEEEECC-EECC------CCCcE
Confidence            8632                            23457999999999974   488899999997 4553      34566


Q ss_pred             EEccCC---eEEEeecCcCCCCcceEEEeeecC
Q psy12724        123 LVLPSG---ELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       123 ~~~~~g---~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+..+|   .|.|.+++.+|+ |.|+|.|.|..
T Consensus       151 ~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~  182 (194)
T 2a38_A          151 QISQEGDLYSLLIAEAYPEDS-GTYSVNATNSV  182 (194)
T ss_dssp             EEEEETTEEEEEEEEECGGGC-EEEEEEEEETT
T ss_pred             EEEEcCCEEEEEECCCChhcC-eEEEEEEEeCC
Confidence            666555   699999999998 99999999987

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.82  E-value=1.4e-19  Score=134.05  Aligned_cols=128  Identities=19%  Similarity=0.321  Sum_probs=97.0

Q ss_pred             eeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc-----------eE--------EEeeeEE
Q psy12724         10 SQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD-----------FV--------VSQSYTV   70 (167)
Q Consensus        10 ~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~-----------~v--------~~g~y~c   70 (167)
                      .+.|...+.+..+.+|+++.|.|.+.+.|.   +.+.|+|++. .+..+..+           .+        ..|.|+|
T Consensus         4 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   79 (197)
T 2j8h_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHPK---PIVKWYRQGK-EIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQV   79 (197)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSC---CEEEEEETTE-ECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEE
T ss_pred             CCEEEEcCCccEEcCCCEEEEEEEEeecCC---CEEEEEECCE-ECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEE
Confidence            356788889999999999999999988765   4799999854 33222111           11        2799999


Q ss_pred             EecC------------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCc
Q psy12724         71 NIMD------------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDG  120 (167)
Q Consensus        71 ~~~~------------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~  120 (167)
                      .+.+                              ..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.      ...
T Consensus        80 ~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g---~p~p~i~W~~~~-~~~~------~~~  149 (197)
T 2j8h_A           80 RATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSG---KPDPVITWQKGQ-DLID------NNG  149 (197)
T ss_dssp             EEEETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEE---ESCCEEEEEESS-CEEC------SSS
T ss_pred             EEEECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEe---cCCCcEEEEECC-EEee------cCC
Confidence            8632                              23456999999999974   588999999997 4553      345


Q ss_pred             eEEEcc---CCeEEEee-cCcCCCCcceEEEeeecC
Q psy12724        121 KYLVLP---SGELHIRD-VGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       121 r~~~~~---~g~L~I~~-v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++.+..   ++.|.|.+ ++.+|+ |.|+|.|.|..
T Consensus       150 ~~~~~~~~~~~~L~i~~~~~~~d~-G~Y~C~a~N~~  184 (197)
T 2j8h_A          150 HYQVIVTRSFTSLVFPNGVERKDA-GFYVVCAKNRF  184 (197)
T ss_dssp             SCEEEECSSEEEEECTTCCCGGGC-EEEEEEEEETT
T ss_pred             CEEEEEcCCceEEEEeCCCCcccC-EeEEEEEEeCC
Confidence            555543   35899999 999998 99999999987

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.82  E-value=9.3e-20  Score=149.26  Aligned_cols=129  Identities=20%  Similarity=0.315  Sum_probs=98.3

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecC-----CceE--------EEeeeEEEecC---------
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN-----QDFV--------VSQSYTVNIMD---------   74 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~-----~~~v--------~~g~y~c~~~~---------   74 (167)
                      +++..+.+|+++.|.|.+.+.|.   |.+.|+|+++..+....     ...+        .+|.|+|.+.|         
T Consensus       212 ~~~~~~~~G~~v~l~C~~~g~P~---p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~  288 (384)
T 3kld_A          212 PETVPAEKGTTVKLECFALGNPV---PTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKG  288 (384)
T ss_dssp             CSEEEEETTSCEEEEEEEEEESC---CEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CCceEecCCCcEEEEEEEeecCC---CcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEE
Confidence            45677899999999999998875   47999998775543211     1111        27999998743         


Q ss_pred             ----------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcC
Q psy12724         75 ----------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPE  138 (167)
Q Consensus        75 ----------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~  138 (167)
                                      ..+.+|+++.|.|.+.   |.|.|.++|+||+ ..+.      .+.|+.+ .+|.|.|.+++.+
T Consensus       289 ~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~---g~P~p~i~W~k~g-~~l~------~~~~~~~-~~~~L~i~~v~~~  357 (384)
T 3kld_A          289 QLTFYAQPNWVQIINDIHVAMEESVFWECKAN---GRPKPTYRWLKNG-DPLL------TRDRIQI-EQGTLNITIVNLS  357 (384)
T ss_dssp             EEEEEEEEEEEECCCCEEECTTCCEEEECEEE---EESCCEEEEEETT-EECC------CBTTEEE-ETTEEEESSCCGG
T ss_pred             EEEEecCCccccCCCceEecCCCCEEEEeECC---ccCCCeEEEEECC-EECC------CCccEEE-eCCEEEEeecChh
Confidence                            3456799999999998   4599999999998 5553      2456654 5789999999999


Q ss_pred             CCCcceEEEeeecC---cceEEEee
Q psy12724        139 DGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       139 D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                      |+ |.|+|.|.|..   ...+.|.+
T Consensus       358 D~-G~Y~C~A~N~~G~~~~~a~L~V  381 (384)
T 3kld_A          358 DA-GMYQCVAENKHGVIFSSAELSV  381 (384)
T ss_dssp             GC-EEEEEEEEETTEEEEEEEEEEE
T ss_pred             hC-EEEEEEEEeCCceEEeceEEEE
Confidence            99 99999999987   34455554

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.82  E-value=2.5e-19  Score=139.87  Aligned_cols=130  Identities=18%  Similarity=0.374  Sum_probs=102.0

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc-----------eE--------EEeeeEEEe
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD-----------FV--------VSQSYTVNI   72 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~-----------~v--------~~g~y~c~~   72 (167)
                      .+.+.|++..|.+|+++.|.|.+.+.+..  +.+.|+|.++..+..+..+           .+        ..|.|+|.+
T Consensus         4 ~v~~~p~~~~v~~G~~v~l~C~~~~~~~~--~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~   81 (291)
T 1qz1_A            4 QVDIVPSQGEISVGESKFFLCQVAGDAKD--KDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (291)
T ss_dssp             CEEEESSSEEEETTCCEEEEEEESSCCSC--CEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceEecCCCceEeCCCeEEEEEEeCCCCCC--cEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEE
Confidence            47788999999999999999999987642  5799999666655432221           11        179999986


Q ss_pred             cC--------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc
Q psy12724         73 MD--------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP  126 (167)
Q Consensus        73 ~~--------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~  126 (167)
                      .+                          ..+.+|+++.|.|.+.+   .|.|.++|+|++. .+..    ..+.++....
T Consensus        82 ~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~---~p~~~v~W~~~~~-~~~~----~~~~~~~~~~  153 (291)
T 1qz1_A           82 TAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVS---SLPPTIIWKHKGR-DVIL----KKDVRFIVLS  153 (291)
T ss_dssp             ECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEEC---SSCCEEEEEETTS-CSST----TCCTTEEECT
T ss_pred             EcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEecc---CCCCEEEEEECCE-Eccc----CCCceEEEcc
Confidence            32                          34578999999999974   5888999999984 4422    2356788888


Q ss_pred             CCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        127 SGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       127 ~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++.|.|.+++.+|+ |.|+|.|.|..
T Consensus       154 ~~~L~i~~~~~~d~-G~Y~C~a~n~~  178 (291)
T 1qz1_A          154 NNYLQIRGIKKTDE-GTYRCEGRILA  178 (291)
T ss_dssp             TSCEEETTCCGGGC-EEEEEEEEEGG
T ss_pred             CCcEEEccCccccC-eEEEEEEEecC
Confidence            89999999999999 99999999976

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.81  E-value=1.6e-19  Score=132.46  Aligned_cols=128  Identities=19%  Similarity=0.315  Sum_probs=93.3

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc-------eE--------EEeeeEEEecC-
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD-------FV--------VSQSYTVNIMD-   74 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~-------~v--------~~g~y~c~~~~-   74 (167)
                      +.|...+.+..+.+|+++.|.|.+.+.+.   +.+.|++++.........+       .+        ..|.|+|.+.+ 
T Consensus         3 ~~~~~~~~~~~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   79 (189)
T 2v5t_A            3 LTFREVVSPQEFKQGEDAEVVCRVSSSPA---PAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVE   79 (189)
T ss_dssp             CEEEECCSSEEEETTSCEEECCEEECSSC---CEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEET
T ss_pred             ceeeccCCCEEEeCCCcEEEEEEEcCCCC---CEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEc
Confidence            35778888999999999999999988764   4799999865332211111       11        27999998632 


Q ss_pred             ----------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc
Q psy12724         75 ----------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP  126 (167)
Q Consensus        75 ----------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~  126 (167)
                                                  ..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.      ...++.+..
T Consensus        80 ~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g---~p~~~v~W~~~g-~~~~------~~~~~~~~~  149 (189)
T 2v5t_A           80 ARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASG---SPEPAISWFRNG-KLIE------ENEKYILKG  149 (189)
T ss_dssp             TTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEE---ESCCEEEEEETT-EECC------CSSSEEEET
T ss_pred             CCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEcc---CCCCeEEEEECC-EECc------CCCcEEEec
Confidence                                        12235999999999974   488899999997 4553      244555544


Q ss_pred             -CCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        127 -SGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       127 -~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                       ++.|.|.+++.+|+ |.|+|.|.|..
T Consensus       150 ~~~~L~i~~~~~~d~-G~Y~C~a~n~~  175 (189)
T 2v5t_A          150 SNTELTVRNIINSDG-GPYVCRATNKA  175 (189)
T ss_dssp             TTTEEEECSCCGGGC-EEEEEEEEETT
T ss_pred             CCCEEEEcCCChhhC-eeEEEEEEeCC
Confidence             56899999999998 99999999987

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.81  E-value=1.5e-18  Score=127.41  Aligned_cols=133  Identities=14%  Similarity=0.185  Sum_probs=96.1

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc-eE------EEeeeEEEecC---------
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD-FV------VSQSYTVNIMD---------   74 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~-~v------~~g~y~c~~~~---------   74 (167)
                      +.+...+....+.+|+++.|.|.+.+.+.+  ..+.|+|++. .+..+... .+      ..|.|+|.+.+         
T Consensus         8 p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~--~~~~W~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~s~~~~l   84 (175)
T 1fnl_A            8 AVVFLEPQWYSVLEKDSVTLKCQGAYSPED--NSTQWFHNES-LISSQASSYFIDAATVNDSGEYRCQTNLSTLSDPVQL   84 (175)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEECCCBTTB--CCCEEEETTE-EEESSCSEEEESSCCGGGCEEEEEECSSSCCCCCEEE
T ss_pred             CEEEEcCCceeeeCCCcEEEEeeCCCCCCC--cceEEEECCE-EccCCceEEEEeCCCcccCEEEEEEeeCCcccccEEE
Confidence            446677887899999999999999988754  2479999853 33322111 11      27999998643         


Q ss_pred             -------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCC
Q psy12724         75 -------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGY  141 (167)
Q Consensus        75 -------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~  141 (167)
                                   ..+.+|+++.|.|.+.+.  .|.+.++|+|++ ..+..           ...++.|.|.+++.+|+ 
T Consensus        85 ~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~~~~W~k~g-~~~~~-----------~~~~~~L~i~~v~~~d~-  149 (175)
T 1fnl_A           85 EVHIGWLLLQAPRWVFKEEDPIHLRCHSWKN--TALHKVTYLQNG-KDRKY-----------FHHNSDFHIPKATLKDS-  149 (175)
T ss_dssp             EEECSSEEEECSCSEEETTCCEEEEEEECTT--CCCEEEEEEETT-EEEEE-----------EEECCCEEESSCCGGGC-
T ss_pred             EEeCCCceeeCCCceecCCCCEEEEEEcCCC--CCceEEEEEECC-eEccC-----------CCCCCEEEEcccChhhC-
Confidence                         245689999999999742  244699999997 45421           12357899999999999 


Q ss_pred             cceEEEeeecC----cceEEEeee
Q psy12724        142 KSYQCRTKHRL----TGETRLSAT  161 (167)
Q Consensus       142 G~Y~C~a~n~~----~~~~~l~~~  161 (167)
                      |.|+|.|.|..    +..+.|.+.
T Consensus       150 G~Y~C~a~n~~~~~~s~~~~l~V~  173 (175)
T 1fnl_A          150 GSYFCRGLVGSKNVSSETVNITIT  173 (175)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEE
T ss_pred             eEEEEEEEcCCCCccCccEEEEEe
Confidence            99999999964    344455543

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.81  E-value=5.6e-19  Score=132.90  Aligned_cols=138  Identities=17%  Similarity=0.268  Sum_probs=101.9

Q ss_pred             eeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc-----------e---------EEEeeeE
Q psy12724         10 SQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD-----------F---------VVSQSYT   69 (167)
Q Consensus        10 ~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~-----------~---------v~~g~y~   69 (167)
                      .+.|...+.+..+.+|+++.|.|.+.+.+.+   .+.|+|++. .+.....+           .         -..|.|+
T Consensus         6 pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~---~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~   81 (212)
T 2yd1_A            6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPP---SIVWRKNGK-KVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYE   81 (212)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCC---EEEEEETTE-ECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEE
T ss_pred             CCEEEcCCCceEEecCCEEEEEEEEccCCCC---eEEEEECCE-ECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEE
Confidence            4568888999999999999999999887754   799999853 33211100           0         1258899


Q ss_pred             EEecC---------------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeee
Q psy12724         70 VNIMD---------------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTE  116 (167)
Q Consensus        70 c~~~~---------------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~  116 (167)
                      |.+.+                                 ..+.+|+++.|.|.+.   +.|.|.++|+|++ ..+..    
T Consensus        82 C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~---g~p~p~i~W~~~~-~~~~~----  153 (212)
T 2yd1_A           82 CVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAI---GNPTPNIYWIKNQ-TKVDM----  153 (212)
T ss_dssp             EEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEE---CSSCCEEEEEETT-EECCT----
T ss_pred             EEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEec---cCCCCeEEEEECC-eEccc----
Confidence            98632                                 2335699999999997   4588999999997 45531    


Q ss_pred             cCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCc----ceEEEeeeC
Q psy12724        117 STDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT----GETRLSATK  162 (167)
Q Consensus       117 ~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~----~~~~l~~~~  162 (167)
                       ...++. ..+|.|.|.+++.+|+ |.|+|.|.|...    ..+.|.+..
T Consensus       154 -~~~~~~-~~~~~L~i~~v~~~d~-G~Y~C~a~N~~G~~~s~~~~l~V~~  200 (212)
T 2yd1_A          154 -SNPRYS-LKDGFLQIENSREEDQ-GKYECVAENSMGTEHSKATNLYVKV  200 (212)
T ss_dssp             -TSTTEE-EETTEEEECSCCGGGC-EEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             -CCCeEE-ccCCeEEEccCChhhC-EEEEEEeecCCCceeEEEEEEEEEe
Confidence             245554 4578999999999998 999999999872    225666644

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.80  E-value=1.5e-18  Score=131.32  Aligned_cols=132  Identities=12%  Similarity=0.148  Sum_probs=96.6

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE-------EEeeeEEEecC---------
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV-------VSQSYTVNIMD---------   74 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v-------~~g~y~c~~~~---------   74 (167)
                      +.+...|.+..+.+|+++.|.|.+.+.+.+  ..+.|+|++. .+..+.....       .+|.|+|.+.+         
T Consensus         8 p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~--~~v~W~k~g~-~l~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~s~~~~l   84 (204)
T 3sgj_C            8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPED--QSTQWFHNES-LISSQASSYFIDAATVDDSGEYRCQTQLSTLSDPVQL   84 (204)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEECCSSSSC--CCEEEEETTE-EESCCSSEEEESSCCGGGCEEEEEEETTSBCCCCEEE
T ss_pred             CeEEEcCCCeEEECCCCEEEEEcCCCCCCC--cEEEEEECCE-EcccCccEEEEecccccCCEEEEEEeCCCcccccEEE
Confidence            346677777899999999999999987754  2499999854 4433221111       27999998743         


Q ss_pred             -------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCC
Q psy12724         75 -------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGY  141 (167)
Q Consensus        75 -------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~  141 (167)
                                   ..+.+|+++.|.|.+.+  +.|.+.++|+||+ ..+..           ...++.|.|.+++.+|+ 
T Consensus        85 ~V~~~p~~~~~~~~~v~~G~~v~L~C~~~~--~~p~~~v~W~k~g-~~~~~-----------~~~~~~L~i~~v~~~D~-  149 (204)
T 3sgj_C           85 EVHIGWLLLQAPRWVFKEEDPIHLRCHSWK--NTALHKVTYLQNG-KGRKY-----------FHHNSDFYIPKATLKDS-  149 (204)
T ss_dssp             EEECSSEEEECSCSEEETTCCEEEEEEEGG--GCCCEEEEEEETT-EEEEE-----------EEECCCEEESSCCGGGC-
T ss_pred             EEecCceEecCCceeEeCCCcEEEEEEecC--CCCCceEEEEECC-cEeec-----------ccCCceEEECcCCcccC-
Confidence                         24568999999999964  2367889999997 44421           11367899999999999 


Q ss_pred             cceEEEeeecC----cceEEEee
Q psy12724        142 KSYQCRTKHRL----TGETRLSA  160 (167)
Q Consensus       142 G~Y~C~a~n~~----~~~~~l~~  160 (167)
                      |.|+|.|.|..    +..+.|.+
T Consensus       150 G~Y~C~a~n~~~~~~s~~~~l~V  172 (204)
T 3sgj_C          150 GSYFCRGLVGSKNVSSETVQITI  172 (204)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEEEEEeCCCceecCcEEEEE
Confidence            99999999943    44555555

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.80  E-value=5.8e-19  Score=132.69  Aligned_cols=134  Identities=20%  Similarity=0.294  Sum_probs=99.7

Q ss_pred             eeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec-----------CCce----------EEEeee
Q psy12724         10 SQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID-----------NQDF----------VVSQSY   68 (167)
Q Consensus        10 ~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~-----------~~~~----------v~~g~y   68 (167)
                      .+.|...+.+..+.+|+++.|.|.+.+.+.   +.+.|+|++. .+..+           +...          -..|.|
T Consensus         9 ~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~---~~v~W~~~g~-~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y   84 (217)
T 2vr9_A            9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPE---PTIEWFKDGE-PVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEY   84 (217)
T ss_dssp             CCEEEECCCCEEECTTSCEEECCEEECSSC---CEEEEEETTE-ECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEE
T ss_pred             CCEEecCCCceEEeCCCcEEEEEEcCCCCC---CeEEEEECCc-CccCCCccceeEEecCCceEEEEEeccCCcccCceE
Confidence            345778889999999999999999988765   4799999753 33221           0000          137999


Q ss_pred             EEEecC---------------------------eEEEeCCcEEEEeee-CCccCCcceeEEEEeCCCeeeEEee--eecC
Q psy12724         69 TVNIMD---------------------------EHVLKGNSAVLKCHI-PSFVADYVAVESWISDQGEELFVDM--TEST  118 (167)
Q Consensus        69 ~c~~~~---------------------------~~v~~G~~a~l~C~~-~~~~~~p~p~i~W~k~~~~~l~~~~--~~~~  118 (167)
                      +|.+.+                           ..+.+|+++.|.|.+ .   +.|.|.++|+|++ ..+....  ....
T Consensus        85 ~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~---g~p~~~v~W~~~g-~~~~~~~~~~~~~  160 (217)
T 2vr9_A           85 WCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPK---GIPEPTLIWIKDG-VPLDDLKAMSFGA  160 (217)
T ss_dssp             EEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCC---EESCCEEEEEETT-EEECCCCCC---C
T ss_pred             EEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCC---CCCCCeEEEEECC-cCCCccccccccc
Confidence            998632                           235689999999998 5   4588999999997 5553110  0012


Q ss_pred             CceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        119 DGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       119 ~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..++.+..++.|.|.+++.+|+ |.|+|.|.|..
T Consensus       161 ~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~N~~  193 (217)
T 2vr9_A          161 SSRVRIVDGGNLLISNVEPIDE-GNYKCIAQNLV  193 (217)
T ss_dssp             CCSEEEETTTEEEESSCCSTTC-EEEEEEEEETT
T ss_pred             CCcEEecCCCcEEEeeCCHHHC-eEEEEEEEccc
Confidence            4567777888999999999998 99999999987

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.80  E-value=1e-18  Score=129.05  Aligned_cols=129  Identities=18%  Similarity=0.273  Sum_probs=94.9

Q ss_pred             eeceeeEEeEEEEEeCCcEEEEee-cCCCCCCcceeeEEeeCCCceeee-cCC---------ceE------EEeeeEEEe
Q psy12724         10 SQYYEAQVYDVFVIKGNAAVFKCN-LPSFVSDHLDVVSWADTDGGQYQI-DNQ---------DFV------VSQSYTVNI   72 (167)
Q Consensus        10 ~~~~~~~~~~~~v~~G~~~~l~C~-a~~~~~~~~~~i~W~k~~~~~~~~-~~~---------~~v------~~g~y~c~~   72 (167)
                      .++....+.+..+.+|+++.|.|. +.+.+..  +.+.|+|++...... +..         ..+      ..|.|+|.+
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   85 (201)
T 3s97_C            8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDD--LSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFV   85 (201)
T ss_dssp             CCCCSSCCCCEEEETTCCEEECCCCCSEESSC--CEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEE
T ss_pred             CccCcCCCceEEEECCCCEEEeccccccCCCc--eEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEE
Confidence            334445668899999999999999 7777651  479999987543211 111         111      279999986


Q ss_pred             cC-----------------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeec
Q psy12724         73 MD-----------------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTES  117 (167)
Q Consensus        73 ~~-----------------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~  117 (167)
                      .+                                   ..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.      
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g---~p~p~v~W~~~~-~~~~------  155 (201)
T 3s97_C           86 SSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALG---NPVPDIRWRKVL-EPMP------  155 (201)
T ss_dssp             EEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEE---ESCCEEEEEETT-BCCC------
T ss_pred             EecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccC---CCCCceEEEeCC-CcCC------
Confidence            32                                   23467999999999974   588999999998 3442      


Q ss_pred             CCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        118 TDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       118 ~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                       ........++.|.|.+++.+|+ |.|+|.|.|..
T Consensus       156 -~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~a~n~~  188 (201)
T 3s97_C          156 -STAEISTSGAVLKIFNIQLEDE-GIYECEAENIR  188 (201)
T ss_dssp             -TTCEEETTTTEEEECSCCGGGC-EEEEEEEEETT
T ss_pred             -CceeecCCCCEEEEccCChhhC-EEEEEEEEecC
Confidence             2233345678999999999998 99999999987

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.80  E-value=8.1e-19  Score=129.25  Aligned_cols=128  Identities=14%  Similarity=0.167  Sum_probs=96.4

Q ss_pred             eeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec--------CCc-eE--------EEeeeEEEe
Q psy12724         10 SQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID--------NQD-FV--------VSQSYTVNI   72 (167)
Q Consensus        10 ~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~--------~~~-~v--------~~g~y~c~~   72 (167)
                      .+.|...+.+..+.+|+++.|.|.+.+.+.   +.+.|+|++. .+..+        +.. .+        ..|.|+|.+
T Consensus         7 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   82 (197)
T 3lcy_A            7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPL---PDIKWYRFGK-ELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIA   82 (197)
T ss_dssp             EEEEEECCCCEEEETTSEEEEEEEEEEESC---CEEEEEETTE-EECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEE
T ss_pred             CCcccccCCceEEeCCCcEEEEEEEecCCC---CEEEEEECCE-ECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEE
Confidence            455788889999999999999999987664   4799999854 33221        110 11        169999986


Q ss_pred             cC----------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE
Q psy12724         73 MD----------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV  124 (167)
Q Consensus        73 ~~----------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~  124 (167)
                      .+                            ..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.      ...++.+
T Consensus        83 ~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~---~p~p~v~W~~~~-~~~~------~~~~~~~  152 (197)
T 3lcy_A           83 TNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIG---RPVPAMTWFHGQ-KLLQ------NSENITI  152 (197)
T ss_dssp             ECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEE---ESCCEEEEEETT-EECC------CCSSEEE
T ss_pred             ECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEee---eeCCeeEEeECC-EECC------CCCceEE
Confidence            32                            23467999999999974   588999999997 4553      3455555


Q ss_pred             ccC---CeEEEeecCc-CCCCcceEEEeeecC
Q psy12724        125 LPS---GELHIRDVGP-EDGYKSYQCRTKHRL  152 (167)
Q Consensus       125 ~~~---g~L~I~~v~~-~D~~G~Y~C~a~n~~  152 (167)
                      ..+   +.|.|.++.. +|+ |.|+|.|.|..
T Consensus       153 ~~~~~~~~L~i~~~~~~~d~-G~Y~C~a~n~~  183 (197)
T 3lcy_A          153 ENTEHYTHLVMKNVQRKTHA-GKYKVQLSNVF  183 (197)
T ss_dssp             EECSSEEEEEESSCCHHHHC-EEEEEEEECSS
T ss_pred             EEcCCEEEEEEccccchhhC-ceEEEEEEcCc
Confidence            544   5799999995 898 99999999987

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.79  E-value=2.1e-18  Score=125.23  Aligned_cols=123  Identities=12%  Similarity=0.212  Sum_probs=91.8

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC-ceE------EEeeeEEEecC----------
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ-DFV------VSQSYTVNIMD----------   74 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~-~~v------~~g~y~c~~~~----------   74 (167)
                      .+...+.+..+.+|+++.|.|.+.+.+..  +.+.|+|++. .+..+.. ..+      ..|.|+|.+.+          
T Consensus         6 ~i~~~p~~~~v~~G~~v~l~C~~~~~p~~--~~~~W~~~g~-~~~~~~~~~~~~~~~~~d~G~Y~C~~~~~~~s~~~~l~   82 (170)
T 3ry4_A            6 VLKLEPPWINVLQEDSVTLTCQGARSPES--DSIQWFHNGN-LIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLT   82 (170)
T ss_dssp             EEEEESCCSEEETTCEEEEEEESCCCSSS--SCEEEEETTE-ECTTCCSSEEEEECCGGGCEEEEEEETTSBCCCCEEEE
T ss_pred             EEEeCCCCeEEECCCcEEEEEEecCCCCc--ceEEEEECCe-EcccCccceEEEecccccCeEEEEEEeCCCceEeEEEE
Confidence            35567777789999999999999988632  4699999853 3332211 111      27999998743          


Q ss_pred             ------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCc
Q psy12724         75 ------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYK  142 (167)
Q Consensus        75 ------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G  142 (167)
                                  ..+.+|+++.|.|.+.+  +.|.+.++|+|++ ..+..           ...++.|.|.+++.+|+ |
T Consensus        83 v~~~~~~~~~~~~~~~~g~~~~l~C~~~~--~~p~~~~~W~~~g-~~~~~-----------~~~~~~L~i~~v~~~d~-G  147 (170)
T 3ry4_A           83 VLFEWLVLQTPHLEFQEGETIMLRCHSWK--DKPLVKVTFFQNG-KSQKF-----------SHLDPTFSIPQANHSHS-G  147 (170)
T ss_dssp             EECCSEEEECSCSEECTTCCEEEEEEEGG--GCCEEEEEEEETT-EEEEE-----------ESSCCEEEESSCCGGGC-E
T ss_pred             EECCceEecCCCceeecCCeEEEEEECCC--CCCCceEEEEECC-eEccc-----------cCCCCeEEEEeccccCC-E
Confidence                        23458999999999953  3477999999987 44421           12357899999999999 9


Q ss_pred             ceEEEeeecC
Q psy12724        143 SYQCRTKHRL  152 (167)
Q Consensus       143 ~Y~C~a~n~~  152 (167)
                      .|+|.|.|..
T Consensus       148 ~Y~C~a~n~~  157 (170)
T 3ry4_A          148 DYHCTGNIGY  157 (170)
T ss_dssp             EEEEEEEETT
T ss_pred             EEEEEEEeCc
Confidence            9999999987

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.79  E-value=3e-18  Score=125.84  Aligned_cols=127  Identities=21%  Similarity=0.412  Sum_probs=93.9

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC-----ceE-----EEeeeEEEecC-----------
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ-----DFV-----VSQSYTVNIMD-----------   74 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~-----~~v-----~~g~y~c~~~~-----------   74 (167)
                      .+....|.+|+++.|.|.+.+.+.+ ...+.|+|++ ..+.....     ...     ..|.|+|.+.+           
T Consensus         4 ~i~~~~v~~G~~v~l~C~~~~~~~p-~~~~~W~k~~-~~l~~~~~~~~~~~l~i~~~~d~G~Y~C~~~n~~~~~~~l~V~   81 (184)
T 3b5h_A            4 TVFTTVEDLGSKILLTCSLNDSATE-VTGHRWLKGG-VVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLH   81 (184)
T ss_dssp             EEEEEEEEETTEEEEEEEEESCSSC-CCEEEEESSS-EEEECTTCCCSEEEEEECGGGCCEEEEEEEESTTSCEEEEEEC
T ss_pred             ceEEEEEecCCCEEEEEECCCCCCC-ceEEEEEeCC-EEeecccccCCcEEEEEechhhCeEEEEEEECCcCcEEEEEEe
Confidence            4556788999999999999887654 3479999975 34433211     011     37999998742           


Q ss_pred             -----------eEEEeCCcEEEEeeeCCccCCc-ceeEEEEe---CCCeeeEEeeeecCCceEEEccCC---eEEEeecC
Q psy12724         75 -----------EHVLKGNSAVLKCHIPSFVADY-VAVESWIS---DQGEELFVDMTESTDGKYLVLPSG---ELHIRDVG  136 (167)
Q Consensus        75 -----------~~v~~G~~a~l~C~~~~~~~~p-~p~i~W~k---~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~  136 (167)
                                 ..+.+|+++.|.|.+.+   .| .|.++|+|   ++...+..    ..++|+.+..++   .|.|.+++
T Consensus        82 ~~P~~~~~~~~~~~~~g~~~~l~C~~~g---~p~~~~i~W~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~~v~  154 (184)
T 3b5h_A           82 GPPRVKAVKSSEHINEGETAMLVCKSES---VPPVTDWAWYKITDSEDKALMN----GSESRFFVSSSQGRSELHIENLN  154 (184)
T ss_dssp             CSCCCEESCSEEEECTTSCEEEEEECCC---SSCCCEEEEEECCSSSCEECCT----TGGGTEEEEEETTEEEEEECSCC
T ss_pred             cCCceeecCCCcEEcCCCcEEEEEEECC---CCCCCeEEEEEcCCCCCEEeec----CCCCEEEEEecCCeeEEEEeecc
Confidence                       34678999999999984   47 79999999   55333211    124778777655   79999999


Q ss_pred             -cCCCCcceEEEeeecC
Q psy12724        137 -PEDGYKSYQCRTKHRL  152 (167)
Q Consensus       137 -~~D~~G~Y~C~a~n~~  152 (167)
                       .+|+ |.|+|.|.|..
T Consensus       155 ~~~d~-G~Y~C~a~N~~  170 (184)
T 3b5h_A          155 MEADP-GQYRCNGTSSK  170 (184)
T ss_dssp             TTTSS-EEEEEEEEETT
T ss_pred             ccccC-ceEEEEEEeCC
Confidence             9998 99999999988

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.79  E-value=7.1e-19  Score=131.17  Aligned_cols=128  Identities=20%  Similarity=0.305  Sum_probs=97.0

Q ss_pred             eeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee-------------cCCce-----------EEE
Q psy12724         10 SQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI-------------DNQDF-----------VVS   65 (167)
Q Consensus        10 ~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~-------------~~~~~-----------v~~   65 (167)
                      .+.|...+.+..+.+|+++.|.|.+.+.+.   +.+.|+|++. .+..             ++...           -..
T Consensus         9 pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   84 (212)
T 2v9r_A            9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPT---PTIEWYKGGE-RVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDE   84 (212)
T ss_dssp             EEEEEECCCCEEECTTCCEEECCEEEEESC---CEEEEEETTE-ECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSC
T ss_pred             CcceecCCCceEEeCCCcEEEEEEcCCCCC---CEEEEEECCE-EeeccccccccceEEecCCcEEEEEEEecCCCcccC
Confidence            456888899999999999999999987665   3799999853 2221             11110           126


Q ss_pred             eeeEEEecC---------------------------eEEEeCCcEEEEeee-CCccCCcceeEEEEeCCCeeeEEeeeec
Q psy12724         66 QSYTVNIMD---------------------------EHVLKGNSAVLKCHI-PSFVADYVAVESWISDQGEELFVDMTES  117 (167)
Q Consensus        66 g~y~c~~~~---------------------------~~v~~G~~a~l~C~~-~~~~~~p~p~i~W~k~~~~~l~~~~~~~  117 (167)
                      |.|+|.+.+                           ..+..|+++.|.|.+ .   +.|.|.++|+|++ ..+.     .
T Consensus        85 G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~---~~p~~~v~W~~~~-~~l~-----~  155 (212)
T 2v9r_A           85 GVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPR---GHPEPTISWKKDG-SPLD-----D  155 (212)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCC---EESCCEEEEEETT-EEEC-----T
T ss_pred             eEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCC---CCCCCEEEEEECC-ccCC-----C
Confidence            999998632                           345789999999998 5   4588999999997 4553     1


Q ss_pred             CCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        118 TDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       118 ~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ...++. ..++.|.|.+++.+|+ |.|+|.|.|..
T Consensus       156 ~~~~~~-~~~~~L~i~~~~~~d~-G~Y~C~a~N~~  188 (212)
T 2v9r_A          156 KDERIT-IRGGKLMITYTRKSDA-GKYVCVGTNMV  188 (212)
T ss_dssp             TSTTEE-EETTEEEESSCCGGGC-EEEEEEEEETT
T ss_pred             CcceEE-ccCCeEEEeeCCHhhC-eeEEEEEeccc
Confidence            233443 4578999999999998 99999999987

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.79  E-value=1.5e-18  Score=140.86  Aligned_cols=142  Identities=47%  Similarity=0.751  Sum_probs=103.4

Q ss_pred             eeceeeEEeEE-EEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec---------CCceE------------EEee
Q psy12724         10 SQYYEAQVYDV-FVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID---------NQDFV------------VSQS   67 (167)
Q Consensus        10 ~~~~~~~~~~~-~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~---------~~~~v------------~~g~   67 (167)
                      .+.|..+|.+. .+.+|+++.|.|.+.+.|.   |.++|+|+|+..+...         +...+            ..|.
T Consensus         3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~---p~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~   79 (388)
T 2v5m_A            3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPM---PEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQV   79 (388)
T ss_dssp             EEEEEECCCSEEEEETTTCEEEECEEEEESC---CEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEE
T ss_pred             CCchhhCCCceEEEEcCccEEEEEECCCCCC---CEEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCce
Confidence            35678788764 4678999999999987765   4899999666555321         11111            1799


Q ss_pred             eEEEecC--------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCce
Q psy12724         68 YTVNIMD--------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGK  121 (167)
Q Consensus        68 y~c~~~~--------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r  121 (167)
                      |+|.+.+                          ..+.+|+++.|.|.+.+..++|.+.++|+|++. .+.... ...++|
T Consensus        80 Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~-~~~~~~-~~~~~~  157 (388)
T 2v5m_A           80 YACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEE-ENYFPG-AEYDGK  157 (388)
T ss_dssp             EEEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTC-CEECSS-SCBTTT
T ss_pred             EEEEEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCC-cccccc-cCCCCc
Confidence            9998742                          346789999999999865445668999999984 432110 012568


Q ss_pred             EEEccCCeEEEeecCcCCCCcceEEEeeecCcceE
Q psy12724        122 YLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGET  156 (167)
Q Consensus       122 ~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~~~~  156 (167)
                      +.+..++.|.|.+++.+|+.|.|+|.|.|...++.
T Consensus       158 ~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~  192 (388)
T 2v5m_A          158 YLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGET  192 (388)
T ss_dssp             EEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCE
T ss_pred             EEEccCCcEEEecCCccccCeeEEEEeccCCCCce
Confidence            88888999999999999932899999999864443

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.79  E-value=4.1e-19  Score=131.66  Aligned_cols=135  Identities=13%  Similarity=0.222  Sum_probs=98.4

Q ss_pred             eeceeeEEeEEEEEeCCcEEEEeecC-CCCCCcceeeEEeeCCCceeeec----------C--------CceE-------
Q psy12724         10 SQYYEAQVYDVFVIKGNAAVFKCNLP-SFVSDHLDVVSWADTDGGQYQID----------N--------QDFV-------   63 (167)
Q Consensus        10 ~~~~~~~~~~~~v~~G~~~~l~C~a~-~~~~~~~~~i~W~k~~~~~~~~~----------~--------~~~v-------   63 (167)
                      .+.|...|.+..+.+|+++.|.|.+. +.+.   +.+.|+|++. .+...          .        ...+       
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~---~~v~W~~~g~-~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   77 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEP---PEVHWLRDGQ-ILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQL   77 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSC---CCCEEEETTE-ECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCS
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCC---cEEEEEECCE-EcccCCCCceEEEEccccccceeeccEEEEEeccc
Confidence            35688899999999999999999998 7664   3799999753 33211          0        0111       


Q ss_pred             -EEeeeEEEecC--------------------------eEEEeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeee
Q psy12724         64 -VSQSYTVNIMD--------------------------EHVLKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMT  115 (167)
Q Consensus        64 -~~g~y~c~~~~--------------------------~~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~  115 (167)
                       ..|.|+|.+.+                          ..+.+|+++.|.|.+.+   .|.| .++|+|++ ..+..   
T Consensus        78 ~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g---~p~p~~v~W~~~~-~~~~~---  150 (195)
T 2c5d_C           78 SDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQG---PPEPVDLLWLQDA-VPLAT---  150 (195)
T ss_dssp             TTCEEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEEC---SSCCCEEEEEESS-CBSSS---
T ss_pred             cCCcEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCC---CCCCCEEEEEECC-EeccC---
Confidence             27999998632                          34567999999999974   5888 89999997 45431   


Q ss_pred             ecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC----cceEEEeeeCC
Q psy12724        116 ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL----TGETRLSATKG  163 (167)
Q Consensus       116 ~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~----~~~~~l~~~~~  163 (167)
                         ..+.  ..++.|.|.+++  |+ |.|+|.|.|..    +..+.|.+.|.
T Consensus       151 ---~~~~--~~~~~L~i~~~~--d~-G~Y~C~a~N~~g~~~s~~~~l~V~P~  194 (195)
T 2c5d_C          151 ---APGH--GPQRSLHVPGLN--KT-SSFSCEAHNAKGVTTSRTATITVLPQ  194 (195)
T ss_dssp             ---STTS--SCCEEEEECCCS--SC-EEEEEEEEETTEEEECCCEEEEEC--
T ss_pred             ---CCCc--CCCCeEEEcccc--cC-ceEEEEEEcCCCceEEEEEEEEEecC
Confidence               1211  457789999998  88 99999999987    34566666554

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.79  E-value=7e-19  Score=129.13  Aligned_cols=133  Identities=19%  Similarity=0.216  Sum_probs=95.2

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc-eE------EEeeeEEEecC---------
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD-FV------VSQSYTVNIMD---------   74 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~-~v------~~g~y~c~~~~---------   74 (167)
                      +.+...+.+..+.+|+++.|.|.+.+.+.+  ..+.|+|++. .+..+... .+      ..|.|+|.+.+         
T Consensus         5 P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~--~~i~W~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~s~~~~l   81 (176)
T 1f2q_A            5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEV--SSTKWFHNGS-LSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYL   81 (176)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC------CCEEEETTE-ECSCCSSEEEECSCCGGGCEEEEEECTTSSCCCCEEE
T ss_pred             CEEEcCCCCcceecCCcEEEEEeCCCCCCc--ceEEEEECCe-ECCCCceEEEEeccceecCEEEEEEcCCccccccEEE
Confidence            456778888899999999999999988653  2589999854 33222111 11      27999998743         


Q ss_pred             -------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCC
Q psy12724         75 -------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGY  141 (167)
Q Consensus        75 -------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~  141 (167)
                                   ..+.+|+++.|.|.+.+  +.|.|.++|+||+ ..+..      .     ..++.|.|.+++.+|+ 
T Consensus        82 ~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~--~~p~~~~~W~~~g-~~~~~------~-----~~~~~L~i~~v~~~d~-  146 (176)
T 1f2q_A           82 EVFSDWLLLQASAEVVMEGQPLFLRCHGWR--NWDVYKVIYYKDG-EALKY------W-----YENHNISITNATVEDS-  146 (176)
T ss_dssp             EEECSSEEEEESCSEEETTSCEEEEEEEGG--GCCEEEEEEEETT-EECCS------C-----CCSSEEEESSCCGGGC-
T ss_pred             EEeCcceeecCCcceeeCCCCEEEEEEecC--CCCceEEEEEECC-EEEee------e-----cCCCeEEECCCCcccC-
Confidence                         24568999999999953  3577899999987 44421      1     1357899999999999 


Q ss_pred             cceEEEeeecC----cceEEEeee
Q psy12724        142 KSYQCRTKHRL----TGETRLSAT  161 (167)
Q Consensus       142 G~Y~C~a~n~~----~~~~~l~~~  161 (167)
                      |.|+|.|.|..    +..+.|.+.
T Consensus       147 G~Y~C~a~n~~~~~~s~~~~l~V~  170 (176)
T 1f2q_A          147 GTYYCTGKVWQLDYESEPLNITVI  170 (176)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEEEEEEEeCCcceEecCEEEEEe
Confidence            99999999963    334555553

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.78  E-value=1.8e-18  Score=134.96  Aligned_cols=140  Identities=19%  Similarity=0.278  Sum_probs=98.9

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc-------eE--------EEeeeEEEecC-
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD-------FV--------VSQSYTVNIMD-   74 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~-------~v--------~~g~y~c~~~~-   74 (167)
                      +.|...+.+..+.+|+++.|.|.+.+.|.+   .+.|++++.........+       .+        ..|.|+|.+.+ 
T Consensus       101 ~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~---~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  177 (291)
T 1qz1_A          101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPP---TIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRIL  177 (291)
T ss_dssp             SEEEECCSSEEEETTSCEEECCEEECSSCC---EEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEG
T ss_pred             ccccCCCCcccccCCCeEEEEEEeccCCCC---EEEEEECCEEcccCCCceEEEccCCcEEEccCccccCeEEEEEEEec
Confidence            345666778889999999999999888653   799999865322111111       11        26999998632 


Q ss_pred             ----------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc
Q psy12724         75 ----------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP  126 (167)
Q Consensus        75 ----------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~  126 (167)
                                                  ..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+....  ....++....
T Consensus       178 ~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g---~p~p~i~W~~~g-~~~~~~~--~~~~~~~~~~  251 (291)
T 1qz1_A          178 ARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADG---FPEPTMSWTKDG-EPIENEE--EDDEKHIFSD  251 (291)
T ss_dssp             GGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEE---ESCCEEEEEETT-EECCCC----CCSSEEECT
T ss_pred             CCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEE---eCCCcEEEEECC-EECcCCC--CCCcceEEcC
Confidence                                        12246999999999974   588999999997 5553210  0124666665


Q ss_pred             CC-eEEEeecCcCCCCcceEEEeeecC---cceEEEee
Q psy12724        127 SG-ELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       127 ~g-~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                      ++ .|.|.+++.+|+ |.|+|.|.|..   +..+.|.+
T Consensus       252 ~~~~L~i~~v~~~d~-G~Y~C~a~N~~G~~~~~~~l~V  288 (291)
T 1qz1_A          252 DSSELTIRNVDKNDE-AEYVCIAENKAGEQDASIHLKV  288 (291)
T ss_dssp             TSCEEEECSCCGGGC-EEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCcEEEEEecChhcC-EEEEEEEEeCCCceEEEEEEEE
Confidence            44 799999999998 99999999987   33444544

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.78  E-value=2.6e-18  Score=134.11  Aligned_cols=130  Identities=18%  Similarity=0.360  Sum_probs=100.1

Q ss_pred             eeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--------c-eE--------EEeeeEEEe
Q psy12724         10 SQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--------D-FV--------VSQSYTVNI   72 (167)
Q Consensus        10 ~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--------~-~v--------~~g~y~c~~   72 (167)
                      .+.+...+.+..+.+|+++.|.|.+.+.+.    .+.|+|+++..+..+..        . .+        ..|.|+|.+
T Consensus         4 ~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~----~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~   79 (291)
T 2wim_A            4 LLQVTISLSKVELSVGESKFFTCTAIGEPE----SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQA   79 (291)
T ss_dssp             CCEEEESCSEEEEETTCCEEEEEEEESCCS----EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CceEEEeccceEecCCCcEEEEEEEeCCCC----ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEE
Confidence            456888899999999999999999987653    59999976655533211        1 11        179999987


Q ss_pred             cC--------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc
Q psy12724         73 MD--------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP  126 (167)
Q Consensus        73 ~~--------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~  126 (167)
                      .+                          ..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+..    ....++.+..
T Consensus        80 ~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~---~p~~~v~W~~~~-~~~~~----~~~~~~~~~~  151 (291)
T 2wim_A           80 TDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSS---SPAPAVSWLYHN-EEVTT----ISDNRFAMLA  151 (291)
T ss_dssp             ECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBC---SSCCEEEEECC-----CB----CCCSSEEECT
T ss_pred             ecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEcc---CCCCEEEEEECC-ccccc----cCCceEEEcc
Confidence            32                          34678999999999974   588899999997 44432    1467888888


Q ss_pred             CCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        127 SGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       127 ~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++.|.|.+++.+|+ |.|+|.|.|..
T Consensus       152 ~~~L~i~~v~~~d~-G~Y~C~~~n~~  176 (291)
T 2wim_A          152 NNNLQILNINKSDE-GIYRCEGRVEA  176 (291)
T ss_dssp             TSCEEETTCCGGGC-EEEEEEEEETT
T ss_pred             CCCEEEEecchhhC-EEEEEEEEECC
Confidence            99999999999999 99999999976

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.77  E-value=8.8e-18  Score=124.12  Aligned_cols=127  Identities=18%  Similarity=0.284  Sum_probs=92.7

Q ss_pred             EeEEEEEe-CCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC----ceE--------EEeeeEEEecC---------
Q psy12724         17 VYDVFVIK-GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ----DFV--------VSQSYTVNIMD---------   74 (167)
Q Consensus        17 ~~~~~v~~-G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~----~~v--------~~g~y~c~~~~---------   74 (167)
                      +.+..+.+ |+++.|.|.+.+.+.+ .+.+.|+|++. .+..+..    ..+        ..|.|+|.+.+         
T Consensus         9 ~~~~~v~~~G~~v~l~C~~~~~~~~-~~~v~W~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~   86 (190)
T 2wv3_A            9 SEEVIIRDSLLPVTLQCNLTSSSHT-LMYSYWTKNGV-ELTATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANAT   86 (190)
T ss_dssp             CCCEECCCSSSCEEEEEEEEECSSC-EEEEEEEETTE-ECTTCCBCCSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cceEEEccCCceEEEEEEeccCCCC-ceEEEEEECCE-ECcccceEeccEEEEEecCCcccCEEEEEEEEeCCcccccEE
Confidence            45566777 9999999999887753 46899999853 3322111    111        27999998732         


Q ss_pred             ---------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeC-CCeeeEEeeeecCCceEEEccCC---eEEEeec
Q psy12724         75 ---------------EHVLKGNSAVLKCHIPSFVADYVAVESWISD-QGEELFVDMTESTDGKYLVLPSG---ELHIRDV  135 (167)
Q Consensus        75 ---------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~-~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v  135 (167)
                                     ..+.+|+++.|.|.+.   |.|.|.++|+|+ ++..+...   ..++++.+..++   .|.|.++
T Consensus        87 l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~---g~p~p~i~W~~~~~g~~~~~~---~~~~~~~~~~~~~~~~L~i~~~  160 (190)
T 2wv3_A           87 IEVKAAPDITGHKRSENKNEGQDAMMYCKSV---GYPHPEWMWRKKENGVFEEIS---NSSGRFFIINKENYTELNIVNL  160 (190)
T ss_dssp             EEEECCCEEEEECSEEEEETTSCEEEEEEEE---CSSCCEEEEEEEETTEEEECC---CTTSCEEEEECSSEEEEEECSC
T ss_pred             EEEecCCcccccCCcceeeCCCcEEEEEEeC---ccCCCceEEEEcCCCceeeee---cCCCeEEEecCCCeeEEEEEec
Confidence                           2457899999999997   458999999994 22444211   246777776554   6999999


Q ss_pred             C-cCCCCcceEEEeeecC
Q psy12724        136 G-PEDGYKSYQCRTKHRL  152 (167)
Q Consensus       136 ~-~~D~~G~Y~C~a~n~~  152 (167)
                      + .+|+ |.|+|.|.|..
T Consensus       161 ~~~~d~-G~Y~C~a~N~~  177 (190)
T 2wv3_A          161 QITEDP-GEYECNATNSI  177 (190)
T ss_dssp             CTTTSC-EEEEEEEECSS
T ss_pred             cccCCC-EEEEEEEEecC
Confidence            9 7998 99999999987

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.77  E-value=7.5e-18  Score=125.37  Aligned_cols=143  Identities=22%  Similarity=0.321  Sum_probs=99.9

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceee----------ecCCce------E--------EEee
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ----------IDNQDF------V--------VSQS   67 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~----------~~~~~~------v--------~~g~   67 (167)
                      .|...+.+..+.+|+++.|.|.+.+.+.   +.+.|+|++.....          ....+.      +        ..|.
T Consensus         3 ~v~~~~~~~~v~~G~~v~L~C~~~~~p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~   79 (212)
T 1f97_A            3 SVYTAQSDVQVPENESIKLTCTYSGFSS---PRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGE   79 (212)
T ss_dssp             EEECSCSEEEEETTCCEEEECEEESCSS---EEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEE
T ss_pred             eEEecCCCeEEEcCCCEEEEeEeCCCCC---cEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeE
Confidence            3566788899999999999999987654   58999998765211          011111      1        2799


Q ss_pred             eEEEecC---------------------------eEEEeCCcEEEEee-eCCccCCcceeEEEEeCCCe-eeEEeee---
Q psy12724         68 YTVNIMD---------------------------EHVLKGNSAVLKCH-IPSFVADYVAVESWISDQGE-ELFVDMT---  115 (167)
Q Consensus        68 y~c~~~~---------------------------~~v~~G~~a~l~C~-~~~~~~~p~p~i~W~k~~~~-~l~~~~~---  115 (167)
                      |+|.+.+                           ..+.+|+++.|.|. +.   +.|.|.++|+|++ . .+.....   
T Consensus        80 Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~---~~p~~~i~W~~~~-~~~l~~~~~~~~  155 (212)
T 1f97_A           80 YTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHD---GSPPSEYSWFKDG-ISMLTADAKKTR  155 (212)
T ss_dssp             EEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSC---CBSCCEEEEEETT-EESBC-----CB
T ss_pred             EEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEccc---CcCCCEEEEEeCC-cccccccccccc
Confidence            9998642                           23568999999999 56   4589999999997 5 5532110   


Q ss_pred             ecCCceEEEc-cCCeEEEeecCcCCCCcceEEEeeecC-----cceEEEeeeC
Q psy12724        116 ESTDGKYLVL-PSGELHIRDVGPEDGYKSYQCRTKHRL-----TGETRLSATK  162 (167)
Q Consensus       116 ~~~~~r~~~~-~~g~L~I~~v~~~D~~G~Y~C~a~n~~-----~~~~~l~~~~  162 (167)
                      .....++... .++.|.|.+++.+|+ |.|+|.|.|..     +..+.|.+.+
T Consensus       156 ~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          156 AFMNSSFTIDPKSGDLIFDPVTAFDS-GEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             SCSSSCEEECTTTCCEEESSCCGGGC-EEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             cccCceeEecCCCceEEEEecChhhC-cEEEEEEccccCCccccceEEEEEEE
Confidence            0011345553 467899999999999 99999999987     2345666544

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.77  E-value=2.3e-18  Score=140.99  Aligned_cols=130  Identities=15%  Similarity=0.304  Sum_probs=98.4

Q ss_pred             eeceeeEEeEEEE---EeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec---------CCceE-------EEeeeEE
Q psy12724         10 SQYYEAQVYDVFV---IKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID---------NQDFV-------VSQSYTV   70 (167)
Q Consensus        10 ~~~~~~~~~~~~v---~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~---------~~~~v-------~~g~y~c   70 (167)
                      .+.|..+|.+..+   .+|+++.|.|.+.+.|.+   .|+|+|++. .+...         +...+       .+|.|+|
T Consensus         5 ~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p---~i~W~k~g~-~l~~~~~~~~~~~~g~l~i~~~~~~~D~G~Y~C   80 (384)
T 3kld_A            5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKP---HIRWKLNGT-DVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQC   80 (384)
T ss_dssp             EEEEEECCCCEEEETTCSCSEEEECCEEEEESCC---EEEEEETTE-ECCC----CEEEETTEEEEESCCHHHHCEEEEE
T ss_pred             CCEEEeCCcceEeecCCCCCeEEEEeEecCCCCC---EEEEEECCE-ECcCCCCccEEEECCEEEEcCCCCcccCEEEEE
Confidence            5678899999887   588999999999988764   899999853 33221         11111       2799999


Q ss_pred             EecC---------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEE
Q psy12724         71 NIMD---------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYL  123 (167)
Q Consensus        71 ~~~~---------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~  123 (167)
                      .+.|                           ..+.+|+++.|.|.++.  +.|.+.++|++++ ..+..     ...++.
T Consensus        81 ~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~--~~~~~~~~W~~~~-~~~~~-----~~~~~~  152 (384)
T 3kld_A           81 IATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPP--HSGELSYAWIFNE-YPSYQ-----DNRRFV  152 (384)
T ss_dssp             EEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCS--EESCEEEEEEETT-EECCC-----SSSEEE
T ss_pred             EEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCC--CCCCeEEEEEECC-CCCEe-----eccEEE
Confidence            8743                           34678999999998753  3467899999997 44431     344555


Q ss_pred             EccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        124 VLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       124 ~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ...+|.|.|.+++.+|+ |.|+|.|.|..
T Consensus       153 ~~~~~~L~I~~v~~~D~-G~Y~C~a~n~~  180 (384)
T 3kld_A          153 SQETGNLYIAKVEKSDV-GNYTCVVTNTV  180 (384)
T ss_dssp             CTTTCCEEESSCCGGGC-EEEEEEEEETT
T ss_pred             EcCCCcEEEeecCHHHC-ceEEEEEeccc
Confidence            55688999999999999 99999999976

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.77  E-value=1.5e-17  Score=122.45  Aligned_cols=121  Identities=17%  Similarity=0.232  Sum_probs=90.4

Q ss_pred             EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee-------------------------cCCceE--------EE
Q psy12724         19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI-------------------------DNQDFV--------VS   65 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~-------------------------~~~~~v--------~~   65 (167)
                      .+.+.+|+++.|.|.+.+.+.   +.+.|+|++...+..                         ++...+        .+
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~---~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~   80 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKS---IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS   80 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSC---CCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGC
T ss_pred             cEEEeCCCCEEEEEEEcCCCc---eEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHC
Confidence            467899999999999986654   479999997643321                         011112        27


Q ss_pred             eeeEEEecC-----------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC
Q psy12724         66 QSYTVNIMD-----------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG  128 (167)
Q Consensus        66 g~y~c~~~~-----------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g  128 (167)
                      |.|+|.+.+                 ..+.+|+++.|.|.+.+   +|.|.++|+++++ .+.             ..++
T Consensus        81 G~Y~C~~~~~~~~~~l~V~~~~~~~~~~v~~g~~~~l~C~~~~---~p~~~v~W~~~~~-~~~-------------~~~~  143 (184)
T 2ny1_B           81 DTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPP---GSSPSVQCRSPRG-KNI-------------QGGK  143 (184)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEEESSCSEEETTCCEEEEEECCT---TCCCEEEEECTTS-CEE-------------EESS
T ss_pred             EEEEEEEEcCCCcEEEEEEEecCCCCceeecCCCEEEEEEcCC---CCCCEEEEEeCCC-ccc-------------cCce
Confidence            999998754                 34678999999999984   4899999999873 221             2467


Q ss_pred             eEEEeecCcCCCCcceEEEeeecC---cceEEEee
Q psy12724        129 ELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       129 ~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                      .|.|.+++.+|+ |.|+|.|.|..   +..+.|.+
T Consensus       144 ~L~i~~v~~~d~-G~Y~C~a~n~~~~~~~~~~l~V  177 (184)
T 2ny1_B          144 TLSVSQLELQDS-GTWTCTVLQNQKKVEFKIDIVV  177 (184)
T ss_dssp             EEEESSCCGGGC-EEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEecCCcCCC-eEEEEEEEECCceEEEEEEEEE
Confidence            899999999999 99999999976   33444544

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.77  E-value=5.1e-18  Score=132.40  Aligned_cols=136  Identities=18%  Similarity=0.301  Sum_probs=96.8

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc-------eE--------EEeeeEEEecC--
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD-------FV--------VSQSYTVNIMD--   74 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~-------~v--------~~g~y~c~~~~--   74 (167)
                      .|...+.+..+.+|+++.|.|.+.+.+.+   .+.|++++.........+       .+        ..|.|+|.+.+  
T Consensus       100 ~~~~~~~~~~v~~G~~v~l~C~~~~~p~~---~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~  176 (291)
T 2wim_A          100 TFREVVSPQEFKQGEDAEVVCRVSSSPAP---AVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEA  176 (291)
T ss_dssp             BCCSCCCSEEEETTSCEEECCCCBCSSCC---EEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEEEETT
T ss_pred             ceEeCCCChhhcCCCCEEEEEEEccCCCC---EEEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEEEECC
Confidence            35566677889999999999999987754   799999865322211111       11        27999998632  


Q ss_pred             ---------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc-
Q psy12724         75 ---------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP-  126 (167)
Q Consensus        75 ---------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~-  126 (167)
                                                 ..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.      .+.++.+.. 
T Consensus       177 ~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g---~p~p~v~W~~~g-~~~~------~~~~~~~~~~  246 (291)
T 2wim_A          177 RGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASG---SPEPAISWFRNG-KLIE------ENEKYILKGS  246 (291)
T ss_dssp             TTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCC---BSCCEEEEEETT-EECC------CTTTEEECST
T ss_pred             CCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeec---CCCCeEEEEECC-EECc------CCccEEEcCC
Confidence                                       12236999999999984   589999999997 4553      345665554 


Q ss_pred             CCeEEEeecCcCCCCcceEEEeeecC---cceEEEeee
Q psy12724        127 SGELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSAT  161 (167)
Q Consensus       127 ~g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~~  161 (167)
                      ++.|.|.+++.+|+ |.|+|.|.|..   ...+.|.++
T Consensus       247 ~~~L~i~~~~~~d~-G~Y~C~a~N~~G~~~~~~~l~v~  283 (291)
T 2wim_A          247 NTELTVRNIINSDG-GPYVCRATNKAGEDEKQAFLQVF  283 (291)
T ss_dssp             TCEEEEESCCSTTC-EEEEEEEEETTEEEEEEEEEEC-
T ss_pred             ccEEEEeeCCcccC-EEEEEEEEECCCceeeeEEEEEE
Confidence            56899999999998 99999999998   444555543

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.77  E-value=5e-18  Score=126.24  Aligned_cols=132  Identities=12%  Similarity=0.109  Sum_probs=91.5

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec-------CCc-eE--------EEeeeEEEecC
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID-------NQD-FV--------VSQSYTVNIMD   74 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~-------~~~-~v--------~~g~y~c~~~~   74 (167)
                      +.+...|.. .|.+|+++.|.|.+.+.+    +.+.|+|++.. +...       ... .+        .+|.|+|.+.+
T Consensus         5 P~i~~~p~~-~v~~G~~v~L~C~~~~~~----~~~~w~k~g~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   78 (188)
T 1oll_A            5 PFIWAEPHF-MVPKEKQVTICCQGNYGA----VEYQLHFEGSL-FAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV   78 (188)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCTTC----CEEEEEETTEE-EEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CEEEeecCC-cCCCCCCEEEEEecCCCC----CEEEEEECCCc-ccccccccCCCcceeEEEeCcCCcccCeEEEEEecC
Confidence            456677776 899999999999997543    36899998543 3210       011 11        27999998621


Q ss_pred             -----------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc
Q psy12724         75 -----------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL  125 (167)
Q Consensus        75 -----------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~  125 (167)
                                                   ..+.+|++++|.|.+.+    +.+.+.|+||+ ..+..       .+....
T Consensus        79 ~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~----~~~~~~w~k~g-~~~~~-------~~~~~~  146 (188)
T 1oll_A           79 GELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDT----ATSMFLLLKEG-RSSHV-------QRGYGK  146 (188)
T ss_dssp             TTEECCCCCCEEEEEESCSCCCEEEEESCSEEETTCEEEEEEECSS----SCSEEEEEEES-SSCEE-------EEEECS
T ss_pred             CCCCCCCCCceEEEecccCCCCeEEECCCCccccCCEEEEEEEcCC----CCCEEEEEECC-ccccc-------cccCCC
Confidence                                         23467999999999863    45689999997 34431       112223


Q ss_pred             cCCeEEEeecCcCCCCcceEEEeeecC------cceEEEeee
Q psy12724        126 PSGELHIRDVGPEDGYKSYQCRTKHRL------TGETRLSAT  161 (167)
Q Consensus       126 ~~g~L~I~~v~~~D~~G~Y~C~a~n~~------~~~~~l~~~  161 (167)
                      .++.|.|.+++.+|+ |.|+|.|.|..      +..+.|.++
T Consensus       147 ~~~~L~I~~v~~~d~-G~Y~C~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          147 VQAEFPLGPVTTAHR-GTYRCFGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             SEEEEEEEECCGGGC-EEEEEECEEETTEECCCCCCEEEEEE
T ss_pred             ceeEEEECCCCcCCC-cEEEEEEEcCCCcCCCCCCcEEEEec
Confidence            457899999999999 99999999863      334555553

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.77  E-value=5.1e-18  Score=126.68  Aligned_cols=125  Identities=10%  Similarity=0.038  Sum_probs=84.5

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee--------cCCceE--------EEeeeEEEecC
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI--------DNQDFV--------VSQSYTVNIMD   74 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~--------~~~~~v--------~~g~y~c~~~~   74 (167)
                      +.+...|. ..|.+|+++.|.|.+.+.+.    .+.|+|++.. +..        .....+        .+|.|+|.+.+
T Consensus         6 P~i~~~p~-~~v~~G~~v~L~C~~~~~~~----~~~W~k~g~~-~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (198)
T 1ugn_A            6 PTLWAEPG-SVITQGSPVTLRCQGGQETQ----EYRLYREKKT-APWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   79 (198)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEECCTTCC----CEEEEESSSC-CHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CeEeccCC-CcccCCCcEEEEEEecCCCc----EEEEEECCcc-ccccccccccCCcccEEEECCCCHHHCeEEEEEEEC
Confidence            34666676 48899999999999988764    4999998653 311        011111        27999997621


Q ss_pred             ------------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE
Q psy12724         75 ------------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV  124 (167)
Q Consensus        75 ------------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~  124 (167)
                                                    ..+.+|+++.|.|.+.+   . .|.++|+|++ ..+.+     ...++..
T Consensus        80 ~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~---~-~~~v~W~k~g-~~~~~-----~~~~~~~  149 (198)
T 1ugn_A           80 DTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQV---A-FDGFILCKEG-EDEHP-----QCLNSQP  149 (198)
T ss_dssp             TTTEECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEECSS---C-CSEEEEEEC------------CEEEC--
T ss_pred             CCCCcccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEecCC---C-CcEEEEEECC-CccCC-----ccccccc
Confidence                                          23568999999999974   3 5689999998 44432     1122222


Q ss_pred             cc----CCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        125 LP----SGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       125 ~~----~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..    ++.|.|.+++.+|+ |.|+|.|.|..
T Consensus       150 ~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~n~~  180 (198)
T 1ugn_A          150 HARGSSRAIFSVGPVSPSRR-WWYRCYAYDSN  180 (198)
T ss_dssp             ----CCEEEEEECCCCTTSC-EEEEEEEECTT
T ss_pred             cCCCcceeEEEecccCcccC-eEEEEEEEeCC
Confidence            22    36899999999999 99999999975

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.77  E-value=2.8e-18  Score=152.11  Aligned_cols=145  Identities=50%  Similarity=0.797  Sum_probs=105.6

Q ss_pred             eceeeEEeEEE-EEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec---------CCceE------------EEeee
Q psy12724         11 QYYEAQVYDVF-VIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID---------NQDFV------------VSQSY   68 (167)
Q Consensus        11 ~~~~~~~~~~~-v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~---------~~~~v------------~~g~y   68 (167)
                      +.|..+|.+.. +..|+++.|.|.|.|.|.   |.++|+|+||..+...         +...+            ..|.|
T Consensus        39 P~~~~~p~~~~~~~~g~~~~l~C~a~g~p~---p~~~W~k~~g~~~~~~~~~~~~~~~g~l~i~~~~~~~~~~~~d~G~Y  115 (816)
T 3dmk_A           39 PVFLKEPTNRIDFSNSTGAEIECKASGNPM---PEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVY  115 (816)
T ss_dssp             EEEEECCCSEEEEETTTCEEEECEEEEESC---CEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEE
T ss_pred             CcEEeCCCCeEEEECCCCeEEEeeecCCCC---CEEEEEeCCCCCccCCCceEEEeeCCcEEEcCCChHHccccccceEE
Confidence            66888888754 667999999999998775   4799999666555321         11111            16999


Q ss_pred             EEEecC--------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceE
Q psy12724         69 TVNIMD--------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY  122 (167)
Q Consensus        69 ~c~~~~--------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~  122 (167)
                      +|.+.+                          ..+.+|++++|+|.+++..+.+.+.+.|+|++...+.+.  ...++|+
T Consensus       116 ~C~a~n~~G~~~S~~~~v~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~--~~~~~r~  193 (816)
T 3dmk_A          116 ACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPG--AEYDGKY  193 (816)
T ss_dssp             EEEEEETTEEEEEEEEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCHHHHTTEEEEEEEETTSCEECBS--SCBTTTE
T ss_pred             EEEEecCcceEEccceEEEEEEccccEEEEecceEecCceEEEEECCCccccccEEEEEEEecCceEeccc--cCCCceE
Confidence            998732                          356789999999998754333347899999984332111  0136799


Q ss_pred             EEccCCeEEEeecCcCCCCcceEEEeeecCcceEEEee
Q psy12724        123 LVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSA  160 (167)
Q Consensus       123 ~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~~~~~l~~  160 (167)
                      .+.++|.|.|++++.+|++|.|+|.|.|..+++..++.
T Consensus       194 ~~~~~g~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~  231 (816)
T 3dmk_A          194 LVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSA  231 (816)
T ss_dssp             EECTTSCEEESSCCGGGSSCEEEEEEEETTTCCEEECS
T ss_pred             EEecCceEEEecCChhhccceeEEEEeeeeeeeeeecc
Confidence            99999999999999999549999999987755544433

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.77  E-value=2.9e-18  Score=128.00  Aligned_cols=126  Identities=11%  Similarity=0.097  Sum_probs=81.4

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee-c-----CCc-eE--------EEeeeEEEecC-
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI-D-----NQD-FV--------VSQSYTVNIMD-   74 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~-~-----~~~-~v--------~~g~y~c~~~~-   74 (167)
                      +.|...|. ..|.+|+++.|.|.+.+.+.    .+.|+|++...... .     ... .+        .+|.|+|.+.+ 
T Consensus         6 P~i~~~p~-~~v~~G~~v~L~C~~~~~~~----~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (196)
T 2d3v_A            6 ATLWAEPG-SVISRGNSVTIRCQGTLEAQ----EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSP   80 (196)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEECCTTCC----EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CEEEeCCC-CcccCCCeEEEEEeCCCCCc----EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCC
Confidence            45677776 48899999999999987643    69999986533210 0     111 11        27999998621 


Q ss_pred             ----------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc
Q psy12724         75 ----------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP  126 (167)
Q Consensus        75 ----------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~  126 (167)
                                                  ..+.+|+++.|.|.+.+   .| |.++|+|++ ..+.+.     ........
T Consensus        81 ~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~---~p-~~~~W~k~g-~~~~~~-----~~~~~~~~  150 (196)
T 2d3v_A           81 AGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRL---RF-DRFILTEEG-DHKLSW-----TLDSQLTP  150 (196)
T ss_dssp             TEECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEESS---CC-SEEEEEEC----CCEE-----EEECEECT
T ss_pred             CCcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEcCC---CC-CEEEEEccC-Cccccc-----cccccccc
Confidence                                        13467999999999984   47 789999998 444221     01111222


Q ss_pred             ----CCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        127 ----SGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       127 ----~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                          .+.|.|.+++.+|+ |.|+|.|.|..
T Consensus       151 ~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~~  179 (196)
T 2d3v_A          151 SGQFQALFPVGPVTPSHR-WMLRCYGSRRH  179 (196)
T ss_dssp             TSCEEEEEECCCCBTTBC-EEEEEEEEETT
T ss_pred             CCCceeEEEeeecCcccC-eeEEEEEEccC
Confidence                26899999999999 99999999975

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.76  E-value=4.9e-18  Score=129.07  Aligned_cols=133  Identities=16%  Similarity=0.216  Sum_probs=85.8

Q ss_pred             ceee-EEe-EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceee---ecC------------Cc-------------
Q psy12724         12 YYEA-QVY-DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ---IDN------------QD-------------   61 (167)
Q Consensus        12 ~~~~-~~~-~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~---~~~------------~~-------------   61 (167)
                      +|++ .|. .+.|.+|+++.|.|.+.+.+.+....|.|+|++.....   .++            .|             
T Consensus         4 Qf~V~~P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~   83 (226)
T 4f80_A            4 QFSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKA   83 (226)
T ss_dssp             CCEEECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEE
T ss_pred             eEEEECCCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeE
Confidence            4554 243 47899999999999987655432236999998643210   110            00             


Q ss_pred             eE--------EEeeeEEEecC-----------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeee
Q psy12724         62 FV--------VSQSYTVNIMD-----------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEEL  110 (167)
Q Consensus        62 ~v--------~~g~y~c~~~~-----------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l  110 (167)
                      .+        .+|.|+|.+.+                       ..+.+|+.+.|.|.+.+  +.|.|.|+|+|+++..+
T Consensus        84 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g--~~P~p~i~W~k~~~~~~  161 (226)
T 4f80_A           84 ALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTG--WYPQPQIQWSNNKGENI  161 (226)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEE--EBSCCEEEEECTTSCBC
T ss_pred             EEEEeeCchHHCeeEEEEEECCCcEEEEEEEEeeccceecccceeeeccCCceeeEEEecc--CCCCCEEEEEECCceEc
Confidence            11        27999998743                       34578999999999974  24899999999875444


Q ss_pred             EEeeeecCCceEEEccCCe---EEEeecCcCCCCcceEEEeeecC
Q psy12724        111 FVDMTESTDGKYLVLPSGE---LHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       111 ~~~~~~~~~~r~~~~~~g~---L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..     ...+.....+|.   +.|.+++.+|+ |.|+|.|+|.+
T Consensus       162 ~~-----~~~~~~~~~~g~~~v~s~l~v~~~d~-G~YtC~a~N~~  200 (226)
T 4f80_A          162 PT-----VEAPVVADGVGLYAVAASVIMRGSSG-EGVSCTIRSSL  200 (226)
T ss_dssp             CC-----EECCCEECTTSCEEEEEEEEECC-----CEEEEEEETT
T ss_pred             CC-----CceEEEECCCCcEEEEEEEEechhcC-cEEEEEEEeCC
Confidence            21     122333444554   34557899998 99999999987

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.76  E-value=8.2e-18  Score=127.51  Aligned_cols=130  Identities=12%  Similarity=0.207  Sum_probs=96.5

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE--------EEeeeEEEecC--------
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV--------VSQSYTVNIMD--------   74 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v--------~~g~y~c~~~~--------   74 (167)
                      .+|...|.+..+.+|+++.|.|.+.+.+.   +.+.|+|++. .+.......+        ..|.|+|.+.+        
T Consensus        19 ~~i~~~p~~~~v~~G~~v~L~C~~~~~p~---~~v~W~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~   94 (218)
T 3k0w_A           19 SKITVNPESKAVLAGQFVKLCCRATGHPF---VQYQWFKMNK-EIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQ   94 (218)
T ss_dssp             CCEEECCCCEEEETTSBEEEECEETTTTS---SEEEEEETTE-ECTTCCSSEEEETTCCGGGCEEEEEEEECTTCCEECC
T ss_pred             CEEEECCCCeEEeCCCcEEEEeeecCCCC---CEEEEEECCE-ECCCCCCCEEEEccCChhhCeEeEEEEEcCCCCceee
Confidence            35788899999999999999999988764   4799999854 3322111111        27899997632        


Q ss_pred             ---------------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCce
Q psy12724         75 ---------------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGK  121 (167)
Q Consensus        75 ---------------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r  121 (167)
                                                       ..+.+|+++.|.|.+.   +.|.|.++|+|++ ..+.      ..  
T Consensus        95 ~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~---g~p~~~v~W~~~~-~~~~------~~--  162 (218)
T 3k0w_A           95 WSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAV---GSPIPHYQWFKNE-LPLT------HE--  162 (218)
T ss_dssp             CEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEE---BSSCCEEEEEETT-EECT------TC--
T ss_pred             EEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEec---ccCCCeEEEEECC-EECC------CC--
Confidence                                             2345799999999996   4589999999997 4442      11  


Q ss_pred             EEEccCCeEEEeecCcCCCCcceEEEeeecC----cceEEEeee
Q psy12724        122 YLVLPSGELHIRDVGPEDGYKSYQCRTKHRL----TGETRLSAT  161 (167)
Q Consensus       122 ~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~----~~~~~l~~~  161 (167)
                          .++.|.|.+++.+|+ |.|+|.|.|..    +..+.|.+.
T Consensus       163 ----~~~~L~i~~v~~~d~-G~Y~C~a~n~~g~~~s~~~~l~V~  201 (218)
T 3k0w_A          163 ----TKKLYMVPYVDLEHQ-GTYWCHVYNDRDSQDSKKVEIIID  201 (218)
T ss_dssp             ----CSSEEEESSCCGGGC-EEEEEEEECSSCEEECCCEEEEEC
T ss_pred             ----CCCEEEEeecChhcC-EEEEEEEEcCCCCceeeeEEEEEe
Confidence                246899999999998 99999999965    334455553

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.76  E-value=5.6e-18  Score=125.72  Aligned_cols=130  Identities=15%  Similarity=0.215  Sum_probs=89.9

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee-------c---------CCc-------------eE---
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI-------D---------NQD-------------FV---   63 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~-------~---------~~~-------------~v---   63 (167)
                      .++++.|.+|+++.|.|.+.+.+.+.++.|.|+|++......       +         ..|             .+   
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            456789999999999999998887656679999975421100       0         000             01   


Q ss_pred             -----EEeeeEEEecC---------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeE
Q psy12724         64 -----VSQSYTVNIMD---------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELF  111 (167)
Q Consensus        64 -----~~g~y~c~~~~---------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~  111 (167)
                           .+|.|.|.+.+                           ..+..|+.+.|.|.+.+   .|.|.|+|+|++ ..+.
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g---~p~p~i~W~~~~-~~~~  160 (218)
T 4frw_A           85 NAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEG---SPAPSVTWDTEV-KGTT  160 (218)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEE---BSCCEEEEEESS-CCEE
T ss_pred             eccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccC---CcCceEEEEECC-cccc
Confidence                 17999997632                           12246889999999974   588999999997 4553


Q ss_pred             EeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        112 VDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       112 ~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ........+.+.  ..+.|.|.+++.+|+ |.|+|.|.|..
T Consensus       161 ~~~~~~~~~~~~--~~s~L~i~~~~~~d~-g~YtC~a~N~~  198 (218)
T 4frw_A          161 SSRSFKHSRSAA--VTSEFHLVPSRSMNG-QPLTCVVSHPG  198 (218)
T ss_dssp             EEEEEECSSSEE--EEEEEEECCCGGGTT-CEEEEEEECTT
T ss_pred             cCceEecCCcEE--EEEEEEEeeCCHHhC-eEEEEEEEeCC
Confidence            221000111111  124699999999998 99999999987

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.76  E-value=2.1e-18  Score=128.62  Aligned_cols=126  Identities=13%  Similarity=0.093  Sum_probs=88.0

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec------CCc-eE--------EEeeeEEEecC-
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID------NQD-FV--------VSQSYTVNIMD-   74 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~------~~~-~v--------~~g~y~c~~~~-   74 (167)
                      +.+...|.. .|.+|+++.|.|.+.+. .   +.+.|+|++.......      ... .+        .+|.|+|.+.+ 
T Consensus         6 P~i~~~p~~-~v~~G~~v~L~C~~~~~-~---~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (196)
T 3p2t_A            6 PTLWAEPGS-VISWGNSVTIWCQGTLE-A---REYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSP   80 (196)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCTT-C---CEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CEEEccCCC-cCCCCCcEEEEeeCCCC-C---CEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCC
Confidence            446677776 89999999999999883 2   4699999865332110      111 11        27999997522 


Q ss_pred             ----------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceE---E
Q psy12724         75 ----------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY---L  123 (167)
Q Consensus        75 ----------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~---~  123 (167)
                                                  ..+.+|++++|.|.+.+    +.+.+.|+|++. .+..     ...+.   .
T Consensus        81 ~g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~----~~~~~~w~k~g~-~~~~-----~~~~~~~~~  150 (196)
T 3p2t_A           81 VGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRS----PMDTFLLCKERA-AHPL-----LCLRSEHGA  150 (196)
T ss_dssp             TEEBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEEEE----EEEEEEEEETTC-CCGG-----GSEEEEEEE
T ss_pred             CcccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEecCC----CCCEEEEEeCCC-cccc-----eeecccccc
Confidence                                        13457999999999863    456789999973 3321     11111   1


Q ss_pred             EccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        124 VLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       124 ~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ...++.|.|.+++.+|+ |.|+|.|.|..
T Consensus       151 ~~~~~~L~i~~v~~~d~-G~Y~C~a~n~~  178 (196)
T 3p2t_A          151 QQHQAEFPMSPVTSVHG-GTYRCFSSHGF  178 (196)
T ss_dssp             EEEEEEEEECSCCGGGC-EEEEEEEECGG
T ss_pred             cCcceEEEeCCCcccCC-CeEEEEEEcCC
Confidence            22457899999999999 99999999986

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.76  E-value=1.6e-17  Score=123.88  Aligned_cols=125  Identities=17%  Similarity=0.240  Sum_probs=91.3

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCce----ee----------------------ecCCceE---
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQ----YQ----------------------IDNQDFV---   63 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~----~~----------------------~~~~~~v---   63 (167)
                      +++.+....+.+|+++.|.|.+.+.+.   +.+.|+|++...    +.                      .++...+   
T Consensus         2 ~~i~~~~~~v~~G~~v~L~C~~~~~~~---~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v   78 (208)
T 3r4d_A            2 VTIEAVPPQVAEDNNVLLLVHNLPLAL---GAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMI   78 (208)
T ss_dssp             CEEEEESSEEETTCCEEEEEECCCSSC---SEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSC
T ss_pred             ccccCccceeecCCcEEEEEeCCCCCc---eEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccc
Confidence            566777889999999999999766654   479999874310    10                      0011111   


Q ss_pred             ---EEeeeEEEecCe---------------------------EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEe
Q psy12724         64 ---VSQSYTVNIMDE---------------------------HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVD  113 (167)
Q Consensus        64 ---~~g~y~c~~~~~---------------------------~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~  113 (167)
                         .+|.|+|.+.+.                           .+.+|+++.|.|.+.+   .| |.++|+|++ ..+.  
T Consensus        79 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~~~~---~p-p~i~W~~~g-~~l~--  151 (208)
T 3r4d_A           79 TMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSND---IG-ANIQWLFNS-QSLQ--  151 (208)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEECSC---TT-CEEEEEETT-EECC--
T ss_pred             cccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEECCC---CC-CceEEEECC-EeCC--
Confidence               279999987431                           1346999999999974   35 789999987 4553  


Q ss_pred             eeecCCceEEEccC-CeEEEeecCcCCCCcceEEEeeecC
Q psy12724        114 MTESTDGKYLVLPS-GELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       114 ~~~~~~~r~~~~~~-g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                          .+.++.+..+ +.|.|.+++.+|+ |.|+|.|.|..
T Consensus       152 ----~~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~a~N~~  186 (208)
T 3r4d_A          152 ----LTERMTLSQNNSILRIDPIKREDA-GEYQCEISNPV  186 (208)
T ss_dssp             ----CCSSEEEETTTTEEEESSCCGGGC-EEEEEEEECTT
T ss_pred             ----CCCCeEEcCCCCEEEEeccCHHhC-eEEEEEEecCC
Confidence                3456666554 7899999999998 99999999987

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.76  E-value=1.4e-17  Score=129.63  Aligned_cols=130  Identities=16%  Similarity=0.350  Sum_probs=97.1

Q ss_pred             EeeeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC---------ceE--------EEeeeEE
Q psy12724          8 VISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ---------DFV--------VSQSYTV   70 (167)
Q Consensus         8 v~~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~---------~~v--------~~g~y~c   70 (167)
                      ...+.|...|.+..+.+|+++.|.|.+.+.+.   +.+.|+|++. .+.....         ..+        ..|.|+|
T Consensus         3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~---~~v~W~~~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   78 (284)
T 2rik_A            3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAP---IKITWAKDNR-EIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTC   78 (284)
T ss_dssp             CCCCEEEECCCCEEEETTCCEEEEEEEESSSC---CEEEEEETTE-ECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             cCCCEEEccccceEecCCCcEEEEEEEEcCCC---CEEEEEECCE-ECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEE
Confidence            34567888999999999999999999998764   4799999854 3322111         111        2699999


Q ss_pred             EecC--------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE
Q psy12724         71 NIMD--------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV  124 (167)
Q Consensus        71 ~~~~--------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~  124 (167)
                      .+.+                          ..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.      ...++.+
T Consensus        79 ~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g---~p~~~v~W~~~~-~~~~------~~~~~~~  148 (284)
T 2rik_A           79 YASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGG---SPEIKVLWYKDE-TEIQ------ESSKFRM  148 (284)
T ss_dssp             EEEETTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEES---SSCCEEEEEETT-EECC------CSSSEEE
T ss_pred             EEEECCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEee---eCCCEEEEEECC-EECc------CCCcEEE
Confidence            8732                          23568999999999974   588999999997 4553      2233332


Q ss_pred             c---cCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        125 L---PSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       125 ~---~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .   .++.|.|.+++.+|+ |.|+|.|.|..
T Consensus       149 ~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~  178 (284)
T 2rik_A          149 SFVESVAVLEMYNLSVEDS-GDYTCEAHNAA  178 (284)
T ss_dssp             EEETTEEEEEECSCCGGGC-EEEEEEEECSS
T ss_pred             EEcCCEEEEEECCCCcccC-EEEEEEEEcCC
Confidence            2   235799999999999 99999999986

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.76  E-value=5.4e-18  Score=137.91  Aligned_cols=133  Identities=17%  Similarity=0.357  Sum_probs=99.5

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc-------eE--------EEeeeEEEecC---
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD-------FV--------VSQSYTVNIMD---   74 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~-------~v--------~~g~y~c~~~~---   74 (167)
                      +...+.+..+.+|+++.|.|.+.+.|.+   .+.|+|++. .+.....+       .+        ..|.|+|.+.+   
T Consensus       224 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  299 (403)
T 3laf_A          224 FLQRPSNVIAIEGKDAVLECCVSGYPPP---SFTWLRGEE-VIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNE  299 (403)
T ss_dssp             EEECCCCEEEETTSCEEECCEEEEESCC---EEEEEETTE-ECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             EecCCCceEecCCCcEEEEEEcCCCCCC---eEEEEECCe-eccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCC
Confidence            4455667889999999999999987754   799999854 33221111       11        26999998743   


Q ss_pred             ----------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEE
Q psy12724         75 ----------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHI  132 (167)
Q Consensus        75 ----------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I  132 (167)
                                            ..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.      ...++.+..++.|.|
T Consensus       300 ~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g---~p~p~v~W~~~g-~~~~------~~~~~~~~~~~~L~i  369 (403)
T 3laf_A          300 NISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSG---KPVPTVNWMKNG-DVVI------PSDYFQIVGGSNLRI  369 (403)
T ss_dssp             EEEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEE---ESCCEEEEEETT-EECC------CSSSEEEETTTEEEE
T ss_pred             ceEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEee---ccCCEEEEEECC-EECC------CCCcEEEecCccEEE
Confidence                                  23457999999999974   588999999998 4553      355677777889999


Q ss_pred             eecCcCCCCcceEEEeeecC---cceEEEee
Q psy12724        133 RDVGPEDGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       133 ~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                      .+++.+|+ |.|+|.|.|..   ...+.|.+
T Consensus       370 ~~v~~~d~-G~Y~C~a~N~~G~~~~~~~l~V  399 (403)
T 3laf_A          370 LGVVKSDE-GFYQCVAENEAGNAQSSAQLIV  399 (403)
T ss_dssp             SSCCGGGC-EEEEEEEEETTEEEEEEEEEEC
T ss_pred             eccccccC-EEEEEEEEcCCceEEEEEEEEE
Confidence            99999998 99999999987   33445544

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.76  E-value=5e-18  Score=134.01  Aligned_cols=132  Identities=17%  Similarity=0.277  Sum_probs=96.7

Q ss_pred             eeeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee---------cCCce-E---------EEeeeE
Q psy12724          9 ISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI---------DNQDF-V---------VSQSYT   69 (167)
Q Consensus         9 ~~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~---------~~~~~-v---------~~g~y~   69 (167)
                      ..+.|...+.+..+.+|+++.|.|.+.+.|.   +.+.|+|++.. +..         ++... +         ..|.|+
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~---~~i~W~k~g~~-i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~   80 (304)
T 2yd9_A            5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPK---PRVTWNKKGKK-VNSQRFETIEFDESAGAVLRIQPLRTPRDENVYE   80 (304)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSC---CEEEEC--------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEE
T ss_pred             cCCeeeecCCceEecCCCeEEEEEEEEEeCC---CeEEEEECCEE-CCCCceEEEEecCCCceEEEEecccccCCCeEEE
Confidence            3466888999999999999999999988765   47999998643 211         11101 1         268999


Q ss_pred             EEecC--------------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeec
Q psy12724         70 VNIMD--------------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTES  117 (167)
Q Consensus        70 c~~~~--------------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~  117 (167)
                      |.+.+                                ..+.+|+++.|.|.+.   +.|.|.++|+|++ ..+...   .
T Consensus        81 C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~---g~p~~~v~W~k~~-~~~~~~---~  153 (304)
T 2yd9_A           81 CVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAAS---GNPDPEITWFKDF-LPVDPS---A  153 (304)
T ss_dssp             EEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEE---CSSCCEEEEEETT-EECCGG---G
T ss_pred             EEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECc---cCCCCeEEEEECC-EECcCC---C
Confidence            98632                                2345699999999997   4588999999997 455321   1


Q ss_pred             CCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        118 TDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       118 ~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ...++....++.|.|.+++.+|+ |.|+|.|.|..
T Consensus       154 ~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~  187 (304)
T 2yd9_A          154 SNGRIKQLRSGALQIESSEETDQ-GKYECVATNSA  187 (304)
T ss_dssp             GTTSEEECTTSCEEECSCCGGGC-EEEEEEEEETT
T ss_pred             CcceEEeCCCeEEEEccCCcccC-EEEEEEEEeCC
Confidence            23467777889999999999999 99999999987

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.75  E-value=2.7e-17  Score=128.09  Aligned_cols=119  Identities=23%  Similarity=0.405  Sum_probs=90.2

Q ss_pred             EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--------c-eE--------EEeeeEEEecC-------
Q psy12724         19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--------D-FV--------VSQSYTVNIMD-------   74 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--------~-~v--------~~g~y~c~~~~-------   74 (167)
                      ...+.+|+++.|.|.+.+.|.   +.+.|+|++. .+.....        . .+        ..|.|+|.+.+       
T Consensus       108 ~~~v~~g~~~~l~C~~~g~p~---~~v~W~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  183 (284)
T 2rik_A          108 SRIVKQDEHTRYECKIGGSPE---IKVLWYKDET-EIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS  183 (284)
T ss_dssp             EEEEETTCCEEEEEEEESSSC---CEEEEEETTE-ECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             ceEecCCceEEEEEEEeeeCC---CEEEEEECCE-ECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeE
Confidence            456889999999999988765   4799999854 3322111        0 11        27999998743       


Q ss_pred             ------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC---CeEEEe
Q psy12724         75 ------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS---GELHIR  133 (167)
Q Consensus        75 ------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~---g~L~I~  133 (167)
                                        ..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.      .+.++.+..+   ..|.|.
T Consensus       184 ~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g---~p~~~v~W~~~~-~~~~------~~~~~~~~~~~~~~~L~i~  253 (284)
T 2rik_A          184 STSLKVKEPPVFRKKPHPVETLKGADVHLECELQG---TPPFQVSWHKDK-RELR------SGKKYKIMSENFLTSIHIL  253 (284)
T ss_dssp             EEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBS---SSCCEEEEEETT-EEEC------BTTTEEEEEETTEEEEEEC
T ss_pred             EEEEEEecCCcceeCCCcceecCCCeEEEEEEEEe---cCCCEEEEEECC-EECc------CCCCEEEEEcCCEEEEEEc
Confidence                              34568999999999974   588999999997 5553      3456665544   379999


Q ss_pred             ecCcCCCCcceEEEeeecC
Q psy12724        134 DVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       134 ~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +++.+|+ |.|+|.|.|..
T Consensus       254 ~v~~~d~-G~Y~C~a~N~~  271 (284)
T 2rik_A          254 NVDSADI-GEYQCKASNDV  271 (284)
T ss_dssp             SCCGGGC-EEEEEEEEETT
T ss_pred             CCCcccC-EEEEEEEEeCC
Confidence            9999998 99999999998

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.75  E-value=4.4e-17  Score=121.55  Aligned_cols=115  Identities=17%  Similarity=0.332  Sum_probs=84.6

Q ss_pred             eCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--------ce-E--------EEeeeEEEecC------------
Q psy12724         24 KGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--------DF-V--------VSQSYTVNIMD------------   74 (167)
Q Consensus        24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--------~~-v--------~~g~y~c~~~~------------   74 (167)
                      .|+.+.|.|.+.+++..  +.+.|+|++. .+..+..        .. +        .+|.|+|.+.+            
T Consensus        16 ~~~~~~l~C~~~~~~p~--~~i~W~~~g~-~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~   92 (212)
T 2r15_A           16 TAEGIQLYSFVTYYVED--LKVNWSHNGS-AIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLS   92 (212)
T ss_dssp             CSSEEEEEEEBSSCCSS--CEEEEEETTE-ECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEC
T ss_pred             cCceEEEEEEEeccCCC--ceEEEEECCE-EccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEE
Confidence            57788888888876533  5899999853 3332111        01 1        17999998632            


Q ss_pred             ----------------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCc
Q psy12724         75 ----------------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDG  120 (167)
Q Consensus        75 ----------------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~  120 (167)
                                                        ..+.+|+++.|.|.+.   +.|.|.++|+|++ ..+.      .+.
T Consensus        93 v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~---g~p~p~v~W~~~~-~~~~------~~~  162 (212)
T 2r15_A           93 GQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVW---GDPPPEVSWLKNE-KALA------QTD  162 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEE---CSSCCEEEEEETT-EEEC------CCS
T ss_pred             EeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEc---CCCCceEEEEECC-eECc------cCC
Confidence                                              3456799999999998   4599999999997 5553      244


Q ss_pred             eEEEccC-C---eEEEeecCcCCCCcceEEEeeecC
Q psy12724        121 KYLVLPS-G---ELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       121 r~~~~~~-g---~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++.+..+ +   .|.|.+++.+|+ |.|+|.|.|..
T Consensus       163 ~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~N~~  197 (212)
T 2r15_A          163 HCNLKFEAGRTAYFTINGVSTADS-GKYGLVVKNKY  197 (212)
T ss_dssp             SEEEEEETTTEEEEEESSCCGGGC-EEEEEEEEETT
T ss_pred             CEEEEEcCCCEEEEEEcCcchHHC-eEEEEEEEcCC
Confidence            5555432 3   899999999998 99999999987

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.75  E-value=1.5e-17  Score=130.74  Aligned_cols=128  Identities=19%  Similarity=0.321  Sum_probs=97.0

Q ss_pred             eeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc-----------eE--------EEeeeEE
Q psy12724         10 SQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD-----------FV--------VSQSYTV   70 (167)
Q Consensus        10 ~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~-----------~v--------~~g~y~c   70 (167)
                      .+.|...+.+..+.+|+++.|.|.+.+.|.   +.+.|+|++. .+..++.+           .+        ..|.|+|
T Consensus         4 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~---~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   79 (305)
T 2nzi_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHPK---PIVKWYRQGK-EIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQV   79 (305)
T ss_dssp             CCEEEECCCCEEECTTCCEEEEEEEECSSC---CEEEEEETTE-ECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEE
T ss_pred             CCeeeecccceEEeCCCcEEEEEEEeCCCC---CeEEEEECCE-EcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEE
Confidence            356888899999999999999999988765   4799999854 33222111           11        2799999


Q ss_pred             EecC------------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCc
Q psy12724         71 NIMD------------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDG  120 (167)
Q Consensus        71 ~~~~------------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~  120 (167)
                      .+.+                              ..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.      ...
T Consensus        80 ~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g---~p~p~i~W~~~~-~~~~------~~~  149 (305)
T 2nzi_A           80 RATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSG---KPDPVITWQKGQ-DLID------NNG  149 (305)
T ss_dssp             EEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEE---ESCCEEEEEESS-SBCC------SSS
T ss_pred             EEEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECC---CCCCEEEEEECC-EECC------CCC
Confidence            8632                              23456999999999974   588999999987 4542      344


Q ss_pred             eEEEcc---CCeEEEee-cCcCCCCcceEEEeeecC
Q psy12724        121 KYLVLP---SGELHIRD-VGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       121 r~~~~~---~g~L~I~~-v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++.+..   ++.|.|.+ ++.+|+ |.|+|.|.|..
T Consensus       150 ~~~~~~~~~~~~l~i~~~~~~~d~-G~Y~C~a~N~~  184 (305)
T 2nzi_A          150 HYQVIVTRSFTSLVFPNGVERKDA-GFYVVCAKNRF  184 (305)
T ss_dssp             SCEEEECSSEEEEEETTCCCSTTC-EEEEEEEEETT
T ss_pred             cEEEEEcCCceEEEEecCCccCcc-EEEEEEEEeCC
Confidence            555442   35799999 999998 99999999987

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.75  E-value=5.5e-18  Score=145.65  Aligned_cols=136  Identities=18%  Similarity=0.296  Sum_probs=99.6

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--------c-eE--------EEeeeEEEec
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--------D-FV--------VSQSYTVNIM   73 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--------~-~v--------~~g~y~c~~~   73 (167)
                      +.|...+.+..+.+|+++.|.|.+.+.|.+   .++|+|++. .+..+..        . .+        .+|.|+|.+.
T Consensus       385 P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p---~v~W~k~g~-~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~  460 (570)
T 3b43_A          385 PVFRKKPHPVETLKGADVHLECELQGTPPF---QVSWHKDKR-ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKAS  460 (570)
T ss_dssp             CEECSCCCCEEECTTCCEEEEEEEESSSSC---CCEEEETTE-ECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CeeecCCCceeecCCCEEEEEEEEecCCCC---EEEEEECCE-ECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEE
Confidence            446777888899999999999999988864   799999853 3322111        0 11        2699999875


Q ss_pred             C-------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC-
Q psy12724         74 D-------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS-  127 (167)
Q Consensus        74 ~-------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~-  127 (167)
                      |                         ..+.+|+++.|.|.+.   |.|.|.++|+||++ .+..     .+.++.+... 
T Consensus       461 N~~G~~~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~---g~p~~~v~W~k~~~-~~~~-----~~~~~~~~~~~  531 (570)
T 3b43_A          461 NDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIE---GAEPISVAWFKDKG-EIVR-----ESDNIWISYSE  531 (570)
T ss_dssp             CSSCEEEEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEEE---SCSSCCCEEEETTE-ECCC-----CTTTEEECCCS
T ss_pred             ECCCeEEEEEEEEeccCCcccccCCCceecCCCeEEEEEEEe---cCCCCEEEEEeCCe-Eecc-----CCCeEEEEECC
Confidence            4                         2346799999999998   45889999999974 3321     2345555422 


Q ss_pred             --CeEEEeecCcCCCCcceEEEeeecC---cceEEEee
Q psy12724        128 --GELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       128 --g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                        +.|.|.+++.+|+ |.|+|.|.|.+   ...+.|++
T Consensus       532 ~~~~L~i~~~~~~d~-G~Y~C~a~N~~G~~~~~a~L~V  568 (570)
T 3b43_A          532 NIATLQFSRAEPANA-GKYTCQIKNEAGTQECFATLSV  568 (570)
T ss_dssp             SEEEEEESSCCTTCC-EEEEEEEECSSCEEEEEEEECC
T ss_pred             CEEEEEECcCCHHHC-EEEEEEEEECCcEEEEEEEEEE
Confidence              4799999999998 99999999987   33455554

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.75  E-value=3e-17  Score=120.10  Aligned_cols=121  Identities=13%  Similarity=0.214  Sum_probs=88.4

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec--------CC---ceE--------EEeeeEEE
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID--------NQ---DFV--------VSQSYTVN   71 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~--------~~---~~v--------~~g~y~c~   71 (167)
                      +.|...|.+..+.+|+++.|.|.+.+.+.   +.+.|+|++. .+...        ..   ..+        ..|.|+|.
T Consensus         3 ~~~~~~p~~~~v~~G~~v~l~C~~~~~p~---~~v~W~k~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   78 (182)
T 1rhf_A            3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEE---PDIQWVKDGA-VVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQ   78 (182)
T ss_dssp             ----CCCEEEEEETTCCEEEEEEEESCSS---CCEEEEETTE-ECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEE
T ss_pred             CEEEeCCcceEEeCCCcEEEEEEEeCCCC---CeEEEEECCe-ecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEE
Confidence            45788899999999999999999998665   3799999753 33211        10   011        27999998


Q ss_pred             ecC--------------------------eEEEeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeeeecCCceEEE
Q psy12724         72 IMD--------------------------EHVLKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMTESTDGKYLV  124 (167)
Q Consensus        72 ~~~--------------------------~~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~~~~~~r~~~  124 (167)
                      +.+                          ..+.+|+++.|.|.+.   +.|.| .++|+|++ ..+.       ....  
T Consensus        79 ~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~---g~p~p~~v~W~~~~-~~~~-------~~~~--  145 (182)
T 1rhf_A           79 VEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAV---GPPEPVTIVWWRGT-TKIG-------GPAP--  145 (182)
T ss_dssp             ESSCTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEE---CSSSCCEEEEEETT-EECS-------CSEE--
T ss_pred             EEcCCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEec---CCCCCCEEEEEcCC-eECC-------CCCC--
Confidence            742                          2456899999999997   45888 89999997 4442       1111  


Q ss_pred             ccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        125 LPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       125 ~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                       .++.|.|.++  +|+ |.|+|.|.|..
T Consensus       146 -~~~~L~i~~~--~d~-G~Y~C~a~N~~  169 (182)
T 1rhf_A          146 -SPSVLNVTGV--TQS-TMFSCEAHNLK  169 (182)
T ss_dssp             -SSEEEEECCC--SSC-EEEEEEEEETT
T ss_pred             -CceEEEEecc--ccC-eEEEEEEECCC
Confidence             5678999998  598 99999999997

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.75  E-value=4.9e-18  Score=125.87  Aligned_cols=123  Identities=14%  Similarity=0.178  Sum_probs=85.7

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE------EEeeeEEEecC-----------
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV------VSQSYTVNIMD-----------   74 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v------~~g~y~c~~~~-----------   74 (167)
                      .+...+.. .|.+|+++.|.|.+.+ +.   +.+.|+|++......++...+      .+|.|+|.+.+           
T Consensus        10 ~i~~~p~~-~v~~G~~v~L~C~~~~-~~---~~~~W~k~g~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~   84 (184)
T 2gi7_A           10 SLQALPSS-LVPLEKPVTLRCQGPP-GV---DLYRLEKLSSSRYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQL   84 (184)
T ss_dssp             EEEEESCS-EEETTCCEEEEEECST-TC---SEEEEEETTTCCEESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCE
T ss_pred             eEEeCCCc-cccCCCcEEEEEeCCC-CC---CEEEEEECCccccCcccEEEECcCChhhCceEEEEEEcCCCccCCCCCE
Confidence            45666664 8999999999999987 32   479999986541111111111      27999998633           


Q ss_pred             ------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecC
Q psy12724         75 ------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVG  136 (167)
Q Consensus        75 ------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~  136 (167)
                                        ..+.+|+++.|.|.+.+    +.+.++|+|++ ..+..      .. .....++.|.|.+++
T Consensus        85 ~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~----~~~~~~w~k~g-~~~~~------~~-~~~~~~~~L~i~~v~  152 (184)
T 2gi7_A           85 ELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRY----GFDQFALYKEG-DPAPY------KN-PERWYRASFPIITVT  152 (184)
T ss_dssp             EEEEESSSCCCEEEEECCCSSCCTTCEEEEEECSS----CCCEEEEEECC-CCTTS------CC-CCEEEEESSSEEEET
T ss_pred             EEEecCcCCCCEEEeCCCceecCCCcEEEEEEcCC----CCcEEEEEECC-CcCcc------ee-cCCCceEEEEEccCC
Confidence                              11246999999999863    34688999997 34321      11 112345689999999


Q ss_pred             cCCCCcceEEEeeecC
Q psy12724        137 PEDGYKSYQCRTKHRL  152 (167)
Q Consensus       137 ~~D~~G~Y~C~a~n~~  152 (167)
                      .+|+ |.|+|.|.|..
T Consensus       153 ~~D~-G~Y~C~a~n~~  167 (184)
T 2gi7_A          153 AAHS-GTYRCYSFSSR  167 (184)
T ss_dssp             TCCS-EEEEEEEECTT
T ss_pred             ccCC-eEEEEEEEeCC
Confidence            9999 99999999974

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.75  E-value=3.3e-17  Score=128.78  Aligned_cols=126  Identities=17%  Similarity=0.151  Sum_probs=90.3

Q ss_pred             ceeeEEe-EEEEEeCCcEEEEeecC-CCCCCcceeeEEeeCCCceeeecCC----------ce-E--------EEeeeEE
Q psy12724         12 YYEAQVY-DVFVIKGNAAVFKCNLP-SFVSDHLDVVSWADTDGGQYQIDNQ----------DF-V--------VSQSYTV   70 (167)
Q Consensus        12 ~~~~~~~-~~~v~~G~~~~l~C~a~-~~~~~~~~~i~W~k~~~~~~~~~~~----------~~-v--------~~g~y~c   70 (167)
                      .+...+. +..+.+|+++.|.|.+. +.|.   +.+.|+|++. .+..+..          .+ +        ..|.|+|
T Consensus       108 ~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~---~~v~W~~~~~-~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  183 (312)
T 2y23_A          108 TVPVKSELAVEILEKGQVRFWMQAEKLSGN---AKVNYIFNEK-EIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTF  183 (312)
T ss_dssp             BCCEEEEEEEEECSSSCEEEEEEESCCCSS---CEEEEEETTE-EECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEE
T ss_pred             ccccccCCceEEeeCCCEEEEEEEEeCCCC---CEEEEEECCE-ECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEE
Confidence            3444443 88899999999999998 5654   4799999854 3322110          00 1        1699999


Q ss_pred             EecC-------------------------------------------eEEEeCCcEEEEeeeCCccCCcce-eEEEEeCC
Q psy12724         71 NIMD-------------------------------------------EHVLKGNSAVLKCHIPSFVADYVA-VESWISDQ  106 (167)
Q Consensus        71 ~~~~-------------------------------------------~~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~  106 (167)
                      .+.+                                           ..+.+|+++.|.|.+.+   .|.| .++|+|++
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~~~~---~p~~~~v~W~~~g  260 (312)
T 2y23_A          184 QLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVAN---IKKETHIVWYKDE  260 (312)
T ss_dssp             EEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEEEES---CCSSCEEEEEETT
T ss_pred             EEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEEEEEcC---CCCCCEEEEeeCC
Confidence            5421                                           25678999999999974   4777 99999997


Q ss_pred             CeeeEEeeeecCCceEEEccC-CeEEEeecCcCCCCcceEEEeeecC
Q psy12724        107 GEELFVDMTESTDGKYLVLPS-GELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       107 ~~~l~~~~~~~~~~r~~~~~~-g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                       ..+..      +.++.+..+ +.|.|.+++.+|+ |.|+|.|.|..
T Consensus       261 -~~~~~------~~~~~~~~~~~~L~I~~v~~~d~-G~Y~C~a~N~~  299 (312)
T 2y23_A          261 -REISV------DEKHDFKDGICTLLITEFSKKDA-GIYEVILKDDR  299 (312)
T ss_dssp             -EEEEE------ECCC----CEEEEEECSCSGGGC-EEEEEEEESTT
T ss_pred             -EECCC------CCcEEEECCEEEEEECcCCHHHC-EEEEEEEEcCC
Confidence             56642      344544433 5899999999999 99999999998

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.74  E-value=8.5e-18  Score=125.02  Aligned_cols=130  Identities=15%  Similarity=0.234  Sum_probs=88.9

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCc-ceeeEEeeCC---------------Cceeee-----c------------CC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDH-LDVVSWADTD---------------GGQYQI-----D------------NQ   60 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~-~~~i~W~k~~---------------~~~~~~-----~------------~~   60 (167)
                      ...++.+.+.+|+++.|.|.+.+.+... .+.+.|.|++               +..+..     .            +.
T Consensus         4 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   83 (214)
T 3jz7_A            4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGD   83 (214)
T ss_dssp             --CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTB
T ss_pred             ecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCc
Confidence            3456788999999999999998876321 2479999842               111110     0            00


Q ss_pred             ceE--------EEeeeEEEecC-------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC
Q psy12724         61 DFV--------VSQSYTVNIMD-------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQG  107 (167)
Q Consensus        61 ~~v--------~~g~y~c~~~~-------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~  107 (167)
                      ..+        .+|.|+|.+.+                         ..+.+|+++.|.|.+..  +.|.|.++|+|+++
T Consensus        84 ~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~--g~p~~~v~W~~~~~  161 (214)
T 3jz7_A           84 ASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKE--GSLPLQFEWQKLSD  161 (214)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSB--CCSSCEEEEEECST
T ss_pred             ccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCC--CCCCCEEEEEECCC
Confidence            011        27999998743                         12356999999999932  55899999999653


Q ss_pred             eeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        108 EELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       108 ~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ....      ...+.....++.|.|.+++.+|+ |.|+|.|.|..
T Consensus       162 ~~~~------~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~N~~  199 (214)
T 3jz7_A          162 SQTM------PTPWLAEMTSPVISVKNASSEYS-GTYSCTVQNRV  199 (214)
T ss_dssp             TCCC------CGGGGGGTTSSEEEECSCCGGGC-EEEEEEEECSS
T ss_pred             CCcc------CccceeccCCCEEEEecCCHHHC-EEEEEEEEcCC
Confidence            2221      12223334577999999999998 99999999987

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.74  E-value=1.2e-17  Score=135.85  Aligned_cols=131  Identities=21%  Similarity=0.427  Sum_probs=99.9

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee----------cCCceE-----------EEeeeE
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI----------DNQDFV-----------VSQSYT   69 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~----------~~~~~v-----------~~g~y~   69 (167)
                      ..|..+|+++.+.+|+++.|.|.+.+...  .+.+.|+|++. .+..          ++...+           ..|.|+
T Consensus        22 ~~~~~~P~~~~v~~G~~v~L~C~~~~~~p--~~~v~W~k~g~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y~   98 (403)
T 3laf_A           22 LHFVSEPSDAVTMRGGNVLLNCSAESDRG--VPVIKWKKDGL-ILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQ   98 (403)
T ss_dssp             SEEEECCCCEEECTTCCEEECCEEECTTC--CCEEEEEETTE-ECCTTSCTTEEECTTSCEEECSCCCBTTBCSSCEEEE
T ss_pred             EEEEeCCCceEEecCCcEEEEEEcCCCCC--CceEEEEECCE-ECccCCcccEEEecCCcEEEeeeeccCCCCCcceEEE
Confidence            34889999999999999999999987532  25799999853 3321          111111           379999


Q ss_pred             EEecC---------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceE
Q psy12724         70 VNIMD---------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY  122 (167)
Q Consensus        70 c~~~~---------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~  122 (167)
                      |.+.+                           ..+.+|+++.|.|.+.   +.|.|.++|+|++ ..+.+.   ....++
T Consensus        99 C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~---~~p~~~v~W~~~~-~~~~~~---~~~~~~  171 (403)
T 3laf_A           99 CEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVI---GDPMPTIHWQKNQ-QDLNPI---PGDSRV  171 (403)
T ss_dssp             EEEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEE---CSSCCEEEEEESS-SBCCCC---TTCCSE
T ss_pred             EEEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEc---ccCCCeEEEEECC-Eecccc---CCceEE
Confidence            98742                           3457899999999997   4588899999997 454321   235667


Q ss_pred             EEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        123 LVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       123 ~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ....++.|.|.+++.+|+ |.|+|.|.|..
T Consensus       172 ~~~~~~~L~i~~~~~~d~-G~Y~C~~~n~~  200 (403)
T 3laf_A          172 VVLPSGALQISRLQPGDS-GVYRCSARNPA  200 (403)
T ss_dssp             EECTTSCEEECSCCGGGC-EEEEEEEECSS
T ss_pred             EEcCCceEEEcccccccC-EEEEEEEEcCC
Confidence            777889999999999999 99999999965

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.74  E-value=2.8e-17  Score=133.22  Aligned_cols=120  Identities=18%  Similarity=0.346  Sum_probs=92.7

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee---cCCceE--------EEeeeEEEecC-----------
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI---DNQDFV--------VSQSYTVNIMD-----------   74 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~---~~~~~v--------~~g~y~c~~~~-----------   74 (167)
                      +.+..+.+|+++.|.|.+.+.|.   +.+.|+|+++. +..   .....+        ..|.|+|.+.+           
T Consensus       214 ~~~~~~~~G~~v~l~C~~~g~p~---~~i~W~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  289 (382)
T 1cs6_A          214 PADTYALTGQMVTLECFAFGNPV---PQIKWRKLDGS-QTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRI  289 (382)
T ss_dssp             CSEEEEETTCCEEEECEEEEESC---CEEEEEECCSC-CSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCceEEeCCCeEEEEEEEccCCC---CEEEEEECCcc-cccEEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence            45778999999999999988764   47999998764 221   111111        27999998732           


Q ss_pred             --------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCC
Q psy12724         75 --------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDG  140 (167)
Q Consensus        75 --------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~  140 (167)
                                    ..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.      ...|+.+ .++.|.|.+++.+|+
T Consensus       290 ~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g---~p~p~v~W~~~g-~~~~------~~~~~~~-~~~~L~i~~v~~~d~  358 (382)
T 1cs6_A          290 IIHAQPDWLDVITDTEADIGSDLRWSCVASG---KPRPAVRWLRDG-QPLA------SQNRIEV-SGGELRFSKLVLEDS  358 (382)
T ss_dssp             EEEEEEEEEECCCCEEEETTCCEEEECEEEE---ESCCEEEEEETT-EECC------CCSSEEE-ETTEEEESSCCGGGC
T ss_pred             EEecCCCcccCCCccEEcCCCeEEEEEEeee---ecCCEEEEEECC-EECC------CCceEEE-ECCEEEECcCCcccC
Confidence                          34567999999999974   588999999997 5553      3456655 478999999999999


Q ss_pred             CcceEEEeeecC
Q psy12724        141 YKSYQCRTKHRL  152 (167)
Q Consensus       141 ~G~Y~C~a~n~~  152 (167)
                       |.|+|.|.|..
T Consensus       359 -G~Y~C~a~N~~  369 (382)
T 1cs6_A          359 -GMYQCVAENKH  369 (382)
T ss_dssp             -EEEEEEEEETT
T ss_pred             -EEEEEEEEeCC
Confidence             99999999987

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.74  E-value=2e-17  Score=128.03  Aligned_cols=148  Identities=17%  Similarity=0.254  Sum_probs=93.8

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCce----e--e-----------------ec-------CCc
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQ----Y--Q-----------------ID-------NQD   61 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~----~--~-----------------~~-------~~~   61 (167)
                      .+...+.++.+.+|+++.|.|.+....+...+.+.|.|++...    +  .                 -.       ..+
T Consensus         7 ~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   86 (268)
T 3mj6_A            7 GLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSL   86 (268)
T ss_dssp             -----CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCE
T ss_pred             ccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEE
Confidence            4567788899999999999999984433345689999965321    0  0                 00       001


Q ss_pred             eE------EEeeeEEEecC----------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeee---
Q psy12724         62 FV------VSQSYTVNIMD----------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEEL---  110 (167)
Q Consensus        62 ~v------~~g~y~c~~~~----------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l---  110 (167)
                      .+      .+|.|+|.+.+                      ..+.+|+++.|.|.+.+..+.|.|.++|+|+++...   
T Consensus        87 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~  166 (268)
T 3mj6_A           87 LLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEE  166 (268)
T ss_dssp             EECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECCCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCE
T ss_pred             EECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEeccCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcce
Confidence            11      27999998732                      345689999999999332256899999999543211   


Q ss_pred             --E----------EeeeecCCceEEE-----ccCCeEEEeecCcCCCCcceEEEeeecC---cceEEEee
Q psy12724        111 --F----------VDMTESTDGKYLV-----LPSGELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       111 --~----------~~~~~~~~~r~~~-----~~~g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                        .          +.....-..|..+     ..++.|.|.+++.+|+ |.|+|.|.|..   +..+.|.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~n~~g~~~~~~~l~V  235 (268)
T 3mj6_A          167 TVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQ-GIYTCSIYVGKLESRKTIVLHV  235 (268)
T ss_dssp             EEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGC-EEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhC-eEEEEEEEcCCceEEEEEEEEE
Confidence              0          0000000123333     3467899999999999 99999999976   33444544

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.74  E-value=2.2e-17  Score=134.19  Aligned_cols=130  Identities=16%  Similarity=0.289  Sum_probs=94.0

Q ss_pred             eEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecC------CceE--------EEeeeEEEecC---------
Q psy12724         18 YDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN------QDFV--------VSQSYTVNIMD---------   74 (167)
Q Consensus        18 ~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~------~~~v--------~~g~y~c~~~~---------   74 (167)
                      .+..+.+|+++.|.|.+.+.|.+   .++|+|++.. +..+.      ...+        ..|.|+|.+.+         
T Consensus       230 ~~~~~~~G~~v~l~C~~~g~p~~---~v~W~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  305 (404)
T 3p3y_A          230 SSQMVLRGMDLLLECIASGVPTP---DIAWYKKGGD-LPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTI  305 (404)
T ss_dssp             EEEEEETTSCEEEECCBCCSSCC---EEEEEETTBC-CCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             CCceEecCCCEEEEEEECCCCCC---cEEEEECCEE-CCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEE
Confidence            56779999999999999988754   7999998653 32111      0111        27999998743         


Q ss_pred             ----------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcC
Q psy12724         75 ----------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPE  138 (167)
Q Consensus        75 ----------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~  138 (167)
                                      ..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+...   ....++ ...++.|.|.+++.+
T Consensus       306 ~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g---~p~p~v~W~~~g-~~~~~~---~~~~~~-~~~~~~L~i~~v~~~  377 (404)
T 3p3y_A          306 SVRVKAAPYWLDEPKNLILAPGEDGRLVCRANG---NPKPTVQWMVNG-EPLQSA---PPNPNR-EVAGDTIIFRDTQIS  377 (404)
T ss_dssp             EEEEEEEEEEEECCCCEEECTTCCEEEECEEEE---ESCCEEEEEETT-EEGGGS---CCCTTE-EEETTEEEESSCCSS
T ss_pred             EEEEeCCCeeeccCCcceeecCCcEEEEEEccc---cCCCceEEEECC-EecCCC---CCCceE-EecCCEEEEeecCHH
Confidence                            34557999999999974   588999999997 455321   011233 335779999999999


Q ss_pred             CCCcceEEEeeecC---cceEEEee
Q psy12724        139 DGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       139 D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                      |+ |.|+|.|.|..   ...+.|.+
T Consensus       378 d~-G~Y~C~a~N~~G~~~~~~~l~V  401 (404)
T 3p3y_A          378 SR-AVYQCNTSNEHGYLLANAFVSV  401 (404)
T ss_dssp             CC-CEEEEEEEETTEEEEEEEEEEE
T ss_pred             HC-EEEEEEEEeCCCcEEEEEEEEE
Confidence            99 99999999987   33444544

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.74  E-value=2.3e-17  Score=126.19  Aligned_cols=135  Identities=12%  Similarity=0.115  Sum_probs=92.5

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee--------cCC--ceE-------EEeeeEEEec
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI--------DNQ--DFV-------VSQSYTVNIM   73 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~--------~~~--~~v-------~~g~y~c~~~   73 (167)
                      +.+...|. ..|.+|+++.|.|.+.+ +.   +.+.|+|++......        +..  ...       .+|.|+|.+.
T Consensus        10 P~i~~~p~-~~v~~G~~vtL~C~~~~-~~---~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   84 (218)
T 1uct_A           10 PFISAKSS-PVIPLDGSVKIQCQAIR-EA---YLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYR   84 (218)
T ss_dssp             CCEEESSC-SEEETTCCEEEEECCCT-TC---SEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEE
T ss_pred             CEEEecCC-CccCCCCCEEEEEEcCC-CC---CEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEE
Confidence            34666666 57999999999999976 32   479999986543211        111  111       2799999763


Q ss_pred             C-----------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE
Q psy12724         74 D-----------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV  124 (167)
Q Consensus        74 ~-----------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~  124 (167)
                      +                             ..+.+|++++|.|.+.   +.|.|.++|+||+ ..+.       ..+...
T Consensus        85 n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~---~~~~~~~~W~k~g-~~~~-------~~~~~~  153 (218)
T 1uct_A           85 IGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSA---HIPFDRFSLAKEG-ELSL-------PQHQSG  153 (218)
T ss_dssp             ETTTEEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEECS---SSCCSEEEEEETT-CSSC-------CSEEEC
T ss_pred             cCCCceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeCC---CCCCCEEEEEECC-Cccc-------ccccCC
Confidence            2                             2345799999999654   3477889999997 3442       122223


Q ss_pred             ccCCeEEEeecCcCCCCcceEEEeeecC--------cceEEEeeeC
Q psy12724        125 LPSGELHIRDVGPEDGYKSYQCRTKHRL--------TGETRLSATK  162 (167)
Q Consensus       125 ~~~g~L~I~~v~~~D~~G~Y~C~a~n~~--------~~~~~l~~~~  162 (167)
                      ..++.|.|.+++.+|+ |.|+|.|.|..        +..+.|.+++
T Consensus       154 ~~~~~L~I~~v~~~D~-G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g  198 (218)
T 1uct_A          154 EHPANFSLGPVDLNVS-GIYRCYGWYNRSPYLWSFPSNALELVVTD  198 (218)
T ss_dssp             SSSEEEECCSCCGGGC-EEEEEEEECTTSTTEECCCCCCEEEEEC-
T ss_pred             CccCEEEEccCCcccC-EEEEEEEEcCCCCCcCCCCCCcEEEEEec
Confidence            3567899999999999 99999999752        3455666644

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.73  E-value=3.2e-17  Score=123.93  Aligned_cols=140  Identities=14%  Similarity=0.075  Sum_probs=89.2

Q ss_pred             eEEeEEEEEeC--CcEEEEeecCCCCCCcceeeEEeeC--CCceeeecC------CceE--------EEeeeEEEecC--
Q psy12724         15 AQVYDVFVIKG--NAAVFKCNLPSFVSDHLDVVSWADT--DGGQYQIDN------QDFV--------VSQSYTVNIMD--   74 (167)
Q Consensus        15 ~~~~~~~v~~G--~~~~l~C~a~~~~~~~~~~i~W~k~--~~~~~~~~~------~~~v--------~~g~y~c~~~~--   74 (167)
                      .+++++.|.+|  +++.|.|.+.+ |.   +.++|.|.  ++..+..+.      ...+        .+|.|+|.+.+  
T Consensus        12 ~~p~~v~v~eG~~~~v~L~C~~~~-p~---~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~   87 (213)
T 2x1w_L           12 DQHGVVYITENKNKTVVIPCLGSI-SN---LNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKIND   87 (213)
T ss_dssp             --CEEEEECCSTTCEEEECCCBSS-TT---CCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC---
T ss_pred             CCceEEEEecCCCccEEEeeccCC-CC---cEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECC
Confidence            35689999999  99999999976 33   46999885  454332211      1111        27999998632  


Q ss_pred             ---------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee--e-ecCCce--E
Q psy12724         75 ---------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM--T-ESTDGK--Y  122 (167)
Q Consensus        75 ---------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~--~-~~~~~r--~  122 (167)
                                                 ..+.+|+++.|.|.+.+. ..|.+.++|+|++. .+....  . .....+  .
T Consensus        88 ~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~-p~~~~~i~W~~~g~-~~~~~~~~~~~~~~~~~~~  165 (213)
T 2x1w_L           88 ESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTE-LNVGIDFNWEYPSS-KHQHKKLVNRDLKTQSGSE  165 (213)
T ss_dssp             -CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEEC-TTBCCEEEEECSCS-SCCSEEEEEEEECCCSSCS
T ss_pred             eeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECC-CCCceEEEEEecCC-ccceEEEeccccccccCcc
Confidence                                       145789999999999743 23445789999874 321100  0 000000  0


Q ss_pred             EEccCCeEEEeecCcCCCCcceEEEeeecC---cceEEEeee
Q psy12724        123 LVLPSGELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSAT  161 (167)
Q Consensus       123 ~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~~  161 (167)
                      .....+.|.|.+++.+|+ |.|+|.|.|..   +..+.|.+.
T Consensus       166 ~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~g~~~~~~~l~V~  206 (213)
T 2x1w_L          166 MKKFLSTLTIDGVTRSDQ-GLYTCAASSGLMTKKNSTFVRVH  206 (213)
T ss_dssp             CEEEEEEEEESSCCGGGC-EEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ceeeeEEEEECCCCcccC-EEEEEEEecCCCcEEEEEEEEEe
Confidence            001134799999999999 99999999987   344555553

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.73  E-value=4.5e-17  Score=132.06  Aligned_cols=125  Identities=16%  Similarity=0.257  Sum_probs=92.6

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cceeeec----CCc----------eE--------EEeeeEEEe
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQYQID----NQD----------FV--------VSQSYTVNI   72 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~~~~----~~~----------~v--------~~g~y~c~~   72 (167)
                      .+.+..+.+|+++.|.|.+.+.|.   |.|.|+|++ +..+..+    ..+          .+        .+|.|+|.+
T Consensus         6 ~~~~~~~~~G~~v~l~C~~~g~p~---p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   82 (389)
T 2jll_A            6 QLKNETTYENGQVTLVCDAEGEPI---PEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEA   82 (389)
T ss_dssp             ECCCEEEETTSEEEEEEEEECSSC---CEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEE
T ss_pred             ecCceEEeCCCeEEEEEEeecccC---CeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEE
Confidence            367788999999999999998875   479999982 4333221    011          11        179999998


Q ss_pred             cC-------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC
Q psy12724         73 MD-------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS  127 (167)
Q Consensus        73 ~~-------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~  127 (167)
                      .+                         ..+.+|+++.|.|.+.+   +|.|.++|+|++ ..+..    ....++.+..+
T Consensus        83 ~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g---~p~~~i~W~~~g-~~l~~----~~~~~~~~~~~  154 (389)
T 2jll_A           83 ASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKS---NPPASIHWRRDK-LVLPA----KNTTNLKTYST  154 (389)
T ss_dssp             ECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEE---ESCCEEEEEETT-EESSC----TTCTTEEEEEC
T ss_pred             EeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEe---cCCCeEEEEECC-ccCCc----ccCceEEEecc
Confidence            54                         13467999999999984   588999999997 45532    12235655544


Q ss_pred             C---eEEEeecCcCCCCcceEEEeeecC
Q psy12724        128 G---ELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       128 g---~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +   .|.|.+++.+|+ |.|+|.|.|..
T Consensus       155 ~~~~~L~i~~~~~~d~-G~Y~C~a~N~~  181 (389)
T 2jll_A          155 GRKMILEIAPTSDNDF-GRYNCTATNHI  181 (389)
T ss_dssp             SSCEEEEECCCSTTSS-EEEEEEEEETT
T ss_pred             CCEEEEEECCCChhhC-EEEEEEEEcCC
Confidence            3   699999999998 99999999987

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.73  E-value=6.7e-17  Score=124.07  Aligned_cols=124  Identities=14%  Similarity=0.155  Sum_probs=94.4

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE-------EEeeeEEEecC---------
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV-------VSQSYTVNIMD---------   74 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v-------~~g~y~c~~~~---------   74 (167)
                      +.+...|.+..+.+|+++.|.|.+.+.+.+  ..+.|+|++. .+..+.....       ..|.|+|.+.+         
T Consensus         2 P~i~~~p~~~~v~~G~~v~l~C~~~~~~~~--~~~~W~~~g~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~s~~~~l   78 (262)
T 3rjd_A            2 AVITLQPPWVSVFQEETVTLHCEVLHLPGS--SSTQWFLNGT-ATQTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQL   78 (262)
T ss_dssp             CEEEESSCCSEEETTCCEEEEEECSSCCCT--TCEEEEETTE-ECSCCSSEEEESSCCGGGCEEEEEEESSSCCCCCEEE
T ss_pred             CeEecCCCcEEeeCCCeEEEEEECCCCCCC--ceEEEEECCE-EeeccCCeEEEecCCcccCeEEEEEEecCCccccEEE
Confidence            457788888999999999999999887653  2699999743 4433222211       27999998743         


Q ss_pred             -------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCC
Q psy12724         75 -------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGY  141 (167)
Q Consensus        75 -------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~  141 (167)
                                   ..+.+|+++.|.|.+..  +.|.+.++|+|++ ..+...           ..++.|.|.+++.+|+ 
T Consensus        79 ~v~~~~~~~~~~~~~~~~g~~v~l~C~~~~--~~p~~~v~W~~~g-~~~~~~-----------~~~~~l~i~~~~~~d~-  143 (262)
T 3rjd_A           79 EIHRGWLLLQVSSRVFTEGEPLALRCHAWK--DKLVYNVLYYRNG-KAFKFF-----------HWNSNLTILKTNISHN-  143 (262)
T ss_dssp             EEECSSEEEEESCSEEETTSCEEEEEEEGG--GCCCEEEEEEETT-EEEEEE-----------EECCCEEESSCCGGGC-
T ss_pred             EEeccceEecCCCeEEecCCeEEEEEEccC--CCCCceEEEEECC-cccccc-----------CCCCeEEEEECChhhC-
Confidence                         24568999999999943  4588899999997 454211           1257899999999999 


Q ss_pred             cceEEEeeecC
Q psy12724        142 KSYQCRTKHRL  152 (167)
Q Consensus       142 G~Y~C~a~n~~  152 (167)
                      |.|+|.|.|..
T Consensus       144 G~Y~C~~~n~~  154 (262)
T 3rjd_A          144 GTYHCSGMGKH  154 (262)
T ss_dssp             EEEEEEEESSS
T ss_pred             EEEEEEEeCCC
Confidence            99999999987

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.73  E-value=2.9e-17  Score=141.16  Aligned_cols=128  Identities=17%  Similarity=0.263  Sum_probs=95.8

Q ss_pred             eeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--------c-eE--------EEeeeEEEe
Q psy12724         10 SQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--------D-FV--------VSQSYTVNI   72 (167)
Q Consensus        10 ~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--------~-~v--------~~g~y~c~~   72 (167)
                      .+.|...++++.+.+|+++.|.|.+.+.|.   |.++|+|++.. +..+..        . .+        ..|.|+|.+
T Consensus         5 pP~f~~~~~~~~v~~G~~v~L~C~~~g~p~---~~v~W~k~g~~-l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   80 (570)
T 3b43_A            5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPE---IRIAWYKEHTK-LRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKA   80 (570)
T ss_dssp             CCEEEECCCCEEECTTSCEEEEEEEESSSS---CEEEEECSSSB-CCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCcceEECCceEEcCCCEEEEEEEEccCCC---CEEEEEECCEE-ccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEE
Confidence            455777888999999999999999998775   47999999653 322110        1 11        279999987


Q ss_pred             cC----------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEE-
Q psy12724         73 MD----------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYL-  123 (167)
Q Consensus        73 ~~----------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~-  123 (167)
                      .|                            ..+.+|+++.|.|.+.+   .|.|.++|+||+ ..+..      +.++. 
T Consensus        81 ~N~~g~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g---~p~~~v~W~k~g-~~l~~------~~~~~~  150 (570)
T 3b43_A           81 ENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRING---SEPLQVSWYKDG-ELLKD------DANLQT  150 (570)
T ss_dssp             EETTEEEEEEEEEEECCCCCCCEESSCCCCEEEETTSCEEEEEEEES---SSSCEEEEEETT-EECCC------CSSEEE
T ss_pred             EeCCceEEEEEEEEECCCCCCCcccccCCCeEecCCCeEEEEEEEcc---CCCCEEEEEECC-EECcC------CCCEEE
Confidence            43                            23456999999999984   588999999997 55532      22322 


Q ss_pred             --EccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        124 --VLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       124 --~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                        ....+.|.|.+++.+|+ |.|+|.|.|..
T Consensus       151 ~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~  180 (570)
T 3b43_A          151 SFIHNVATLQILQTDQSHV-GQYNCSASNPL  180 (570)
T ss_dssp             EEETTEEEEEESSCCGGGC-EEEEEEEEETT
T ss_pred             EEECCEEEEEECcCChHHC-EEEEEEEEeCC
Confidence              22346899999999999 99999999976

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.73  E-value=1.4e-17  Score=123.97  Aligned_cols=112  Identities=15%  Similarity=0.275  Sum_probs=82.0

Q ss_pred             EEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCce------E---EEeeeEEEecCe---------------
Q psy12724         20 VFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDF------V---VSQSYTVNIMDE---------------   75 (167)
Q Consensus        20 ~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~------v---~~g~y~c~~~~~---------------   75 (167)
                      ..+..|+++.|.|.+.+ +.    .|.|+|++. .+..+..+.      +   .+|.|+|.+.+.               
T Consensus         9 ~v~~~G~~v~L~C~~~~-~~----~i~W~k~g~-~l~~~~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~   82 (186)
T 1jbj_A            9 KVSISGTSVELTCPLDS-DE----NLKWEKNGQ-ELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSA   82 (186)
T ss_dssp             EEEEETTEEEEECSSCC-CT----TCEEEETTE-EECSCCCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCSC
T ss_pred             EEEeCCcEEEEEEeCCC-CC----ceEEEECCE-ECCCCCCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEecc
Confidence            34588999999999987 33    299999854 443322221      1   279999987431               


Q ss_pred             --------------------------------EEE---eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCc
Q psy12724         76 --------------------------------HVL---KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDG  120 (167)
Q Consensus        76 --------------------------------~v~---~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~  120 (167)
                                                      .+.   +|+++.|.|.+      |.|.++|+||+ ..+..      ..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~------p~p~i~W~k~g-~~i~~------~~  149 (186)
T 1jbj_A           83 DDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL------TDKTIKWLKDG-SIISP------LN  149 (186)
T ss_dssp             CCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS------SCSCEEEEETT-EECCC------SS
T ss_pred             cccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC------CCCeEEEEECC-EECcc------cC
Confidence                                            012   89999999998      56789999998 45531      11


Q ss_pred             eEEEccCCeEEEeecCcCCCCcceEEEeeecCcce
Q psy12724        121 KYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGE  155 (167)
Q Consensus       121 r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~~~  155 (167)
                      +    .++.|.|.+++.+|+ |.|+|.|.|..+..
T Consensus       150 ~----~~~~L~i~~v~~~D~-G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          150 A----TKNTWNLGNNAKDPR-GTYQCQGAKETSNP  179 (186)
T ss_dssp             C----CSSCCEEEETTSCCE-EEEEEEESSCEEEE
T ss_pred             C----CcceEEECCCCcCcC-EEEEEEEEcCcCCc
Confidence            1    467899999999999 99999999998544

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.73  E-value=8.7e-18  Score=128.40  Aligned_cols=134  Identities=15%  Similarity=0.143  Sum_probs=88.1

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCce----eee------------------------cC------
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQ----YQI------------------------DN------   59 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~----~~~------------------------~~------   59 (167)
                      ...+.++.|.+|+++.|.|.+.+....+.+.+.|+|++...    +..                        ..      
T Consensus         6 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~   85 (250)
T 2fbo_J            6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVA   85 (250)
T ss_dssp             ECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECS
T ss_pred             EcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEec
Confidence            34556889999999999999976211223589999986331    111                        00      


Q ss_pred             ---CceE--------EEeeeEEEecC----------------------------------eEEEeCCcEEEEeeeCCccC
Q psy12724         60 ---QDFV--------VSQSYTVNIMD----------------------------------EHVLKGNSAVLKCHIPSFVA   94 (167)
Q Consensus        60 ---~~~v--------~~g~y~c~~~~----------------------------------~~v~~G~~a~l~C~~~~~~~   94 (167)
                         ...+        .+|.|+|.+.+                                  ..+.+|+++.|.|.+.+   
T Consensus        86 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g---  162 (250)
T 2fbo_J           86 NLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTD---  162 (250)
T ss_dssp             CTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEES---
T ss_pred             cCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecC---
Confidence               0011        27999998743                                  11124999999999974   


Q ss_pred             CcceeEEEEeCCCeeeEEee------------------eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         95 DYVAVESWISDQGEELFVDM------------------TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        95 ~p~p~i~W~k~~~~~l~~~~------------------~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .|.|.++|+|++ ..+....                  ......+.....++.|.|.+++.+|+ |.|+|.|.|..
T Consensus       163 ~p~p~v~W~k~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~N~~  236 (250)
T 2fbo_J          163 CANANVTWYTGP-TFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDA-GRVWCELATGQ  236 (250)
T ss_dssp             CTTCEEEEEEEE-ECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGC-EEEEEEEESSS
T ss_pred             CCCCeeEEEeCC-CcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccC-EEEEEEecCCc
Confidence            488899999986 3432100                  00001223332457999999999998 99999999954

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.73  E-value=3e-17  Score=133.21  Aligned_cols=119  Identities=17%  Similarity=0.261  Sum_probs=91.3

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec-C---------Cc-eE--------EEeeeEEEecC---
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID-N---------QD-FV--------VSQSYTVNIMD---   74 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~-~---------~~-~v--------~~g~y~c~~~~---   74 (167)
                      +.+..+.+|+++.|.|.+.+.|.+   .+.|+|++. .+... .         .. .+        ..|.|+|.+.+   
T Consensus       219 ~~~~~~~~G~~v~l~C~~~g~p~~---~i~W~~~g~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  294 (395)
T 1bih_A          219 SKDMMAKAGDVTMIYCMYGSNPMG---YPNYFKNGK-DVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVG  294 (395)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCC---CCEEEETTE-ECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSS
T ss_pred             CCceEEECCCcEEEEEEeccCCCC---eEEEEECCE-EcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCC
Confidence            457789999999999999887754   699999853 33211 0         00 11        27999998743   


Q ss_pred             ------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeE
Q psy12724         75 ------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGEL  130 (167)
Q Consensus        75 ------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L  130 (167)
                                              ..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.       .+|+.+. ++.|
T Consensus       295 ~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g---~p~p~v~W~~~g-~~~~-------~~~~~~~-~~~L  362 (395)
T 1bih_A          295 KPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTG---LPAPNVVWSHNA-KPLS-------GGRATVT-DSGL  362 (395)
T ss_dssp             SCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEE---ESCCCCEEEETT-EECC-------SSSEEEE-TTEE
T ss_pred             CceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECc---ccCCeeEEEECC-EECC-------CCceEEE-CCEE
Confidence                                    23467999999999974   588999999997 4542       3466654 5699


Q ss_pred             EEeecCcCCCCcceEEEeeecC
Q psy12724        131 HIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       131 ~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .|.+++.+|+ |.|+|.|.|..
T Consensus       363 ~i~~~~~~d~-G~Y~C~a~N~~  383 (395)
T 1bih_A          363 VIKGVKNGDK-GYYGCRATNEH  383 (395)
T ss_dssp             EESSCCSTTC-EEEEEEEEETT
T ss_pred             EEeeCCcccC-EEEEEEEEccC
Confidence            9999999999 99999999987

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.73  E-value=1.1e-17  Score=133.69  Aligned_cols=132  Identities=18%  Similarity=0.261  Sum_probs=98.3

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecC-------CCCCCcceeeEEeeCCCceeeecC--Cc------eE--------EEee
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLP-------SFVSDHLDVVSWADTDGGQYQIDN--QD------FV--------VSQS   67 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~-------~~~~~~~~~i~W~k~~~~~~~~~~--~~------~v--------~~g~   67 (167)
                      +.|...+++..|.+|+++.|.|.+.       +.+.   +.+.|+|++.....+..  .+      .+        ..|.
T Consensus        19 p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~---~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~   95 (339)
T 3o4o_C           19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPR---INLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGT   95 (339)
T ss_dssp             EEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSC---CBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEE
T ss_pred             HhhCcCceEEEEECCccEEEEeccccccccccCCCC---ceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEE
Confidence            5688899999999999999999998       5443   47999998764222211  11      11        2799


Q ss_pred             eEEEecC---------------------------eEEEeCCcEEEEeeeCC--ccCCcceeEEEEeCCCeeeEEeeeecC
Q psy12724         68 YTVNIMD---------------------------EHVLKGNSAVLKCHIPS--FVADYVAVESWISDQGEELFVDMTEST  118 (167)
Q Consensus        68 y~c~~~~---------------------------~~v~~G~~a~l~C~~~~--~~~~p~p~i~W~k~~~~~l~~~~~~~~  118 (167)
                      |+|.+.+                           ..+.+|+++.|.|.+..  ..+.|.|.++|+||+ ..+.     ..
T Consensus        96 Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g-~~~~-----~~  169 (339)
T 3o4o_C           96 YVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDS-LLLD-----KD  169 (339)
T ss_dssp             EECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESS-CBCC-----TT
T ss_pred             EEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCC-eeCC-----CC
Confidence            9998632                           34578999999999421  015689999999997 4553     23


Q ss_pred             CceEEEccC-CeEEEeecCcCCCCcceEEEeeecC
Q psy12724        119 DGKYLVLPS-GELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       119 ~~r~~~~~~-g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..++.+..+ +.|.|.+++.+|+ |.|+|.|.|..
T Consensus       170 ~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~a~n~~  203 (339)
T 3o4o_C          170 NEKFLSVRGTTHLLVHDVALEDA-GYYRCVLTFAH  203 (339)
T ss_dssp             CSSEEECTTSSEEEESSCCGGGC-EEEEEEEECCB
T ss_pred             CceeEEcCCcceEEEcccCHhhC-eEEEEEEEECC
Confidence            467777654 5899999999999 99999999865

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.72  E-value=7.1e-17  Score=130.88  Aligned_cols=138  Identities=28%  Similarity=0.446  Sum_probs=99.2

Q ss_pred             EeeeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec------------CCceE------EE-eee
Q psy12724          8 VISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID------------NQDFV------VS-QSY   68 (167)
Q Consensus         8 v~~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~------------~~~~v------~~-g~y   68 (167)
                      .+.+.|...+.+..+.+|+++.|.|.+.+.++++.+.+.|++++.......            +...+      .. |.|
T Consensus       101 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y  180 (388)
T 2v5m_A          101 VVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSY  180 (388)
T ss_dssp             ECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCE
T ss_pred             ccccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCccccCeeE
Confidence            344567777888899999999999999988765567899999976543221            11111      14 999


Q ss_pred             EEEecC-----------------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeee-EE
Q psy12724         69 TVNIMD-----------------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEEL-FV  112 (167)
Q Consensus        69 ~c~~~~-----------------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l-~~  112 (167)
                      +|.+.+                                   ..+.+|+++.|.|.+.+   .|.|.++|+|++.... ..
T Consensus       181 ~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g---~p~p~v~W~~~~~~~~~~~  257 (388)
T 2v5m_A          181 QCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQG---FPAPSFRWYKFIEGTTRKQ  257 (388)
T ss_dssp             EEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEE---ESCCEEEEEEECTTSSCEE
T ss_pred             EEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCC---CCCCEEEEEecCCCCcccc
Confidence            998732                                   13456999999999874   5889999999752111 11


Q ss_pred             eeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        113 DMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       113 ~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..  ....++. ..++.|.|.+++.+|+ |.|+|.|.|..
T Consensus       258 ~~--~~~~~~~-~~~~~L~i~~v~~~d~-G~Y~C~a~n~~  293 (388)
T 2v5m_A          258 AV--VLNDRVK-QVSGTLIIKDAVVEDS-GKYLCVVNNSV  293 (388)
T ss_dssp             EC--CCSSSEE-EETTEEEESSCCGGGC-EEEEEEEECSS
T ss_pred             cc--cccCcee-cccCEEEECcCCHHHC-eEEEEEEecCC
Confidence            11  1234443 3478999999999999 99999999987

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.72  E-value=1.2e-16  Score=129.42  Aligned_cols=127  Identities=13%  Similarity=0.074  Sum_probs=89.4

Q ss_pred             EEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE------EEeeeEEEecC-------------------
Q psy12724         20 VFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV------VSQSYTVNIMD-------------------   74 (167)
Q Consensus        20 ~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v------~~g~y~c~~~~-------------------   74 (167)
                      ..+.+|+++.|.|.+.+.|.   |.+.|+|+++.....+....+      ..|.|+|.+.+                   
T Consensus       106 ~~v~~G~~v~l~C~~~~~p~---~~v~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~  182 (363)
T 1wio_A          106 THLLQGQSLTLTLESPPGSS---PSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA  182 (363)
T ss_dssp             SSEESBSCEEEEEECCTTCC---CCEEEECSSSCEEEESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCS
T ss_pred             eEEecCCCEEEEEEcCCCCC---CeEEEEcCCCcccccceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCC
Confidence            35789999999999988654   479999997654432222211      27999998632                   


Q ss_pred             ---eEEEeCCcEEEEeeeCCcc-C-CcceeEEEEeCCCeeeEEee--eecCCceEEEc-----------cC--CeEEEee
Q psy12724         75 ---EHVLKGNSAVLKCHIPSFV-A-DYVAVESWISDQGEELFVDM--TESTDGKYLVL-----------PS--GELHIRD  134 (167)
Q Consensus        75 ---~~v~~G~~a~l~C~~~~~~-~-~p~p~i~W~k~~~~~l~~~~--~~~~~~r~~~~-----------~~--g~L~I~~  134 (167)
                         ..+.+|+++.|.|.+.+.. + .|.|.++|+|++ ..+.+..  ....++++.+.           .+  +.|.|.+
T Consensus       183 ~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~  261 (363)
T 1wio_A          183 SSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAER-ASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQ  261 (363)
T ss_dssp             EEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESS-CCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESS
T ss_pred             CCceEEecCCEEEEEEEEecccccCCCceeEEEecCC-CCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEcc
Confidence               2356799999999886410 1 589999999997 3442100  00014455442           33  3899999


Q ss_pred             cCcCCCCcceEEEeeec
Q psy12724        135 VGPEDGYKSYQCRTKHR  151 (167)
Q Consensus       135 v~~~D~~G~Y~C~a~n~  151 (167)
                      ++.+|+ |.|+|.|.|.
T Consensus       262 v~~~d~-G~Y~C~a~n~  277 (363)
T 1wio_A          262 ALPQYA-GSGNLTLALE  277 (363)
T ss_dssp             BCGGGC-EEEEEEECBT
T ss_pred             CCcCcC-cEEEEEEEEh
Confidence            999999 9999999999

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.72  E-value=9e-18  Score=124.67  Aligned_cols=134  Identities=19%  Similarity=0.329  Sum_probs=95.2

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceee---------e-cCCc------eE--------EEee
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ---------I-DNQD------FV--------VSQS   67 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~---------~-~~~~------~v--------~~g~   67 (167)
                      .+...+.+..+.+|+++.|.|.+.+.+.   +.+.|+|++.....         . ...+      .+        ..|.
T Consensus         6 ~i~~~~~~~~v~~G~~v~L~C~~~~~p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~   82 (209)
T 1nbq_A            6 TVHSSEPEVRIPENNPVKLSCAYSGFSS---PRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGT   82 (209)
T ss_dssp             EEECSCSBCCEETTCCCEEECEEESCSS---EEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSE
T ss_pred             EEEcCCCceEEEcCCCEEEEEEEeCCCC---cEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcE
Confidence            4566788889999999999999987754   57999998664211         0 0111      11        2799


Q ss_pred             eEEEecC---------------------------eEEEeCCcEEEEeee-CCccCCcceeEEEEeCCCeeeEEeee---e
Q psy12724         68 YTVNIMD---------------------------EHVLKGNSAVLKCHI-PSFVADYVAVESWISDQGEELFVDMT---E  116 (167)
Q Consensus        68 y~c~~~~---------------------------~~v~~G~~a~l~C~~-~~~~~~p~p~i~W~k~~~~~l~~~~~---~  116 (167)
                      |+|.+.+                           ..+.+|+++.|.|.+ .   +.|.|.++|+|++ ..+.....   .
T Consensus        83 Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~---~~p~~~v~W~~~~-~~~~~~~~~~~~  158 (209)
T 1nbq_A           83 YTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQD---GSPPSEYTWFKDG-IVMPTNPKSTRA  158 (209)
T ss_dssp             EEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCS---CBSCCEEEEEETT-CCCCSCSSSSSS
T ss_pred             EEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCC---CCCCceeEEEECC-eeCCCcccccee
Confidence            9998642                           235789999999997 5   4589999999997 45432100   0


Q ss_pred             cCCceEEEc-cCCeEEEeecCcCCCCcceEEEeeecCc
Q psy12724        117 STDGKYLVL-PSGELHIRDVGPEDGYKSYQCRTKHRLT  153 (167)
Q Consensus       117 ~~~~r~~~~-~~g~L~I~~v~~~D~~G~Y~C~a~n~~~  153 (167)
                      ....++.+. .++.|.|.+++.+|+ |.|+|.|.|...
T Consensus       159 ~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~g  195 (209)
T 1nbq_A          159 FSNSSYVLNPTTGELVFDPLSASDT-GEYSCEARNGYG  195 (209)
T ss_dssp             CTTCCCCCCTTTCCEEESSCCGGGC-CCEEEEEECSSS
T ss_pred             eeccceEEcCCcceEEEEeccccCC-eEEEEEEeCCcC
Confidence            001334333 457899999999998 999999999873

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.72  E-value=1e-16  Score=119.37  Aligned_cols=124  Identities=13%  Similarity=0.134  Sum_probs=85.0

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCC--CcceeeEEeeCCCceeee--------c----CCceE--------EEeeeEEEec
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVS--DHLDVVSWADTDGGQYQI--------D----NQDFV--------VSQSYTVNIM   73 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~--~~~~~i~W~k~~~~~~~~--------~----~~~~v--------~~g~y~c~~~   73 (167)
                      .++.+.+.+|+++.|.|.+.+.+.  ...+.+.|+|+++.....        +    +...+        .+|.|+|.+.
T Consensus         8 p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   87 (202)
T 3bp6_B            8 PKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVI   87 (202)
T ss_dssp             SCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEE
Confidence            445688999999999999988763  112579999943332211        1    00111        2799999873


Q ss_pred             C---------------------e---EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC-
Q psy12724         74 D---------------------E---HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG-  128 (167)
Q Consensus        74 ~---------------------~---~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g-  128 (167)
                      +                     .   .+.+|+++.|.|.+.+   .|.|.++|+|++. .+..        .+....+| 
T Consensus        88 ~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~v~l~C~~~g---~P~p~v~W~~~~~-~~~~--------~~~~~~~~~  155 (202)
T 3bp6_B           88 CGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARG---YPLAEVSWQNVSV-PANT--------SHIRTPEGL  155 (202)
T ss_dssp             ETTEEEEEEEEEEEEBCCCCEEEEEEECTTTCCEEEEEEEEE---BSCCEEEETTCCS-CCEE--------EEEECTTSC
T ss_pred             eCCCcceEEEEEEecCCCCcccEEEEecCCCCeEEEEEEccc---cCCceEEEEeCCC-CccC--------ceeeCCCCC
Confidence            2                     0   1236999999999974   5999999999874 4322        12223334 


Q ss_pred             --eEEEeecCcCCCCcceEEEeeecC
Q psy12724        129 --ELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       129 --~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                        .|.|.+++.+|+ |.|+|.|.|..
T Consensus       156 ~~~~~i~~v~~~d~-G~Y~C~a~N~~  180 (202)
T 3bp6_B          156 YQVTSVLRLKPQPS-RNFSCMFWNAH  180 (202)
T ss_dssp             EEEEEEEEECCCTT-CCEEEEEEETT
T ss_pred             EEEEEEEEEEcCCC-CEEEEEEEcCC
Confidence              366889999998 99999999987

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.71  E-value=2.4e-17  Score=124.81  Aligned_cols=118  Identities=13%  Similarity=0.217  Sum_probs=83.0

Q ss_pred             eEEEE-EeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec----CCceE------EEeeeEEEecC------------
Q psy12724         18 YDVFV-IKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID----NQDFV------VSQSYTVNIMD------------   74 (167)
Q Consensus        18 ~~~~v-~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~----~~~~v------~~g~y~c~~~~------------   74 (167)
                      .++.+ .+|+++.|.|.+   +.   +.++|+|++. .+...    +...+      .+|.|+|.+.+            
T Consensus        10 ~~~~~~~~G~~v~L~C~~---p~---~~i~W~k~g~-~l~~~~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s~~~~v~v~~   82 (204)
T 1sy6_A           10 VKVYDYQEDGSVLLTCDA---EA---KNITWFKDGK-MIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRM   82 (204)
T ss_dssp             EEECCCCSSSEEEEEECS---CS---SEEEEEETTE-EEEEEESSCCCEEEEEGGGCCEEEEEEESSSSCCCCEEEEEEC
T ss_pred             eeEEeecCCCeEEEEEcC---CC---CEEEEEECCE-ECCCCCCCCCeEEeCCCCcCCCEEEEEEecCCCCeeEEEEEEE
Confidence            34444 589999999999   22   4799999854 44321    11112      37999997532            


Q ss_pred             ---------------------------------------eEEE-eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee
Q psy12724         75 ---------------------------------------EHVL-KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM  114 (167)
Q Consensus        75 ---------------------------------------~~v~-~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~  114 (167)
                                                             ..+. +|+++.|.|..     .|.|.++|+|++ ..+..  
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~g-----~p~p~i~W~k~~-~~l~~--  154 (204)
T 1sy6_A           83 GSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQ-----YPGSEILWQHND-KNIGG--  154 (204)
T ss_dssp             ------------------------------------CCCCEEEEETTEEEEECSC-----CCSSCEEEEETT-EEESC--
T ss_pred             eccccccccccccccccccccccccccccccccceecCCceeeecCCcEEEEcCC-----CCCCceEEEECC-EECCC--
Confidence                                                   0123 89999999993     378889999997 45421  


Q ss_pred             eecCCceEEEccCCeEEEeec-CcCCCCcceEEEeeecCc
Q psy12724        115 TESTDGKYLVLPSGELHIRDV-GPEDGYKSYQCRTKHRLT  153 (167)
Q Consensus       115 ~~~~~~r~~~~~~g~L~I~~v-~~~D~~G~Y~C~a~n~~~  153 (167)
                        ..+.+.....++.|.|.++ +.+|+ |.|+|.|.|...
T Consensus       155 --~~~~~~~~~~~~~L~I~~v~~~~D~-G~Y~C~A~N~~g  191 (204)
T 1sy6_A          155 --DEDDKNIGSDEDHLSLKEFSELEQS-GYYVCYPRGSKP  191 (204)
T ss_dssp             --CTTCTTEEEETTEEEETTCCHHHHC-EEEEEEETTSCG
T ss_pred             --ccCCceEecCCCEEEEeeCCccccC-EEEEEEeccCCC
Confidence              1122333335899999999 99999 999999999884

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.71  E-value=8e-17  Score=121.25  Aligned_cols=130  Identities=15%  Similarity=0.232  Sum_probs=90.7

Q ss_pred             eEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC----------ceE--------EEeeeEEEecC-----
Q psy12724         18 YDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ----------DFV--------VSQSYTVNIMD-----   74 (167)
Q Consensus        18 ~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~----------~~v--------~~g~y~c~~~~-----   74 (167)
                      ....|.+|+++.|.|.+.+.+.   +.+.|+|++. .+.....          ..+        ..|.|+|.+.+     
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~---~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~  102 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPM---PTMRWLKNGK-EFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI  102 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESC---CEEEEEETTE-ECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             eeEEEccCCCEEEEEecccCCC---CeEEEEECCc-cccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcc
Confidence            7889999999999999988765   3799999854 3322110          011        27999997632     


Q ss_pred             -------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEe----CCCeeeEEeeeecCCceEE--
Q psy12724         75 -------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWIS----DQGEELFVDMTESTDGKYL--  123 (167)
Q Consensus        75 -------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k----~~~~~l~~~~~~~~~~r~~--  123 (167)
                                               ..+.+|+++.|.|.+.+   .|.|.++|+|    ++ ..+...    ......  
T Consensus       103 ~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~---~p~p~v~W~~~~~~~g-~~~~~~----~~~~~~~~  174 (231)
T 3ojm_B          103 NHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYS---DAQPHIQWIKHVEKNG-SKYGPD----GLPYLKVL  174 (231)
T ss_dssp             EEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEEC---SSCCEEEEEEECCBTT-BSBCTT----SCBCEEEE
T ss_pred             cccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEec---CCCCEEEEEECCCCCC-ccccCC----CcceEeEe
Confidence                                     34567999999999974   5888999999    54 343211    111111  


Q ss_pred             ------EccCCeEEEeecCcCCCCcceEEEeeecC---cceEEEee
Q psy12724        124 ------VLPSGELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       124 ------~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                            ...++.|.|.+++.+|+ |.|+|.|.|..   +..+.|.+
T Consensus       175 ~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~g~~~~~~~l~V  219 (231)
T 3ojm_B          175 KHSGINSSNAEVLALFNVTEADA-GEYICKVSNYIGQANQSAWLTV  219 (231)
T ss_dssp             EECSTTCSCTTEEEECSCCGGGC-EEEEEEEEETTEEEEEEEEEEE
T ss_pred             cccccccCCccEEEEecCCHHHC-eEEEEEEEeccceEeeEEEEEE
Confidence                  12345799999999998 99999999987   33344444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.71  E-value=9.6e-18  Score=135.82  Aligned_cols=131  Identities=11%  Similarity=0.090  Sum_probs=95.0

Q ss_pred             eeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC------ceE--------EEe-eeEEEecC
Q psy12724         10 SQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ------DFV--------VSQ-SYTVNIMD   74 (167)
Q Consensus        10 ~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~------~~v--------~~g-~y~c~~~~   74 (167)
                      .+.+...+.+..+.+|+++.|.|.+.+.|.+   .+.|.++++........      ..+        ..| .|+|.+.+
T Consensus       158 ~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p---~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n  234 (347)
T 2ifg_A          158 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLE---QAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAEN  234 (347)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCC---CCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEE
T ss_pred             CCceeccCCceEEeCCCcEEEEEEEecCCCC---EEEEEcCCceeecccccceecccceEEEeeCChHHCCCeEEEEEEc
Confidence            3457777888899999999999999887754   79999997653322110      011        269 99998643


Q ss_pred             e---------------------EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc--------
Q psy12724         75 E---------------------HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL--------  125 (167)
Q Consensus        75 ~---------------------~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~--------  125 (167)
                      .                     .+.+|+++.|.|.+.|   .|.|.++|+|++ ..+...    ...+..+.        
T Consensus       235 ~~g~~~~~~~l~V~~~P~i~~~~~~~g~~v~l~C~~~g---~P~p~i~W~~~g-~~l~~~----~~~~~~~~~~~~~~~~  306 (347)
T 2ifg_A          235 DVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDG---QPAPSLRWLFNG-SVLNET----SFIFTEFLEPAANETV  306 (347)
T ss_dssp             TTEECCEEECCCCBEEEEEEECCCEESSSEEEEEEEEE---ESCCEEEEEETT-EECCCC----SSEEEEECCCCTTCCC
T ss_pred             CCCCEEEEEEEEEcCCCeeeeccCccCceEEEEEEeee---cCCCcEEEEeCC-EECCCC----cceeeEEEeecCCCcc
Confidence            1                     1246999999999985   499999999997 455311    11111122        


Q ss_pred             cCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        126 PSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       126 ~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+|.|.|.+++.+|+ |.|+|.|.|..
T Consensus       307 ~~~~L~I~~v~~~d~-G~Y~C~a~N~~  332 (347)
T 2ifg_A          307 RHGCLRLNQPTHVNN-GNYTLLAANPF  332 (347)
T ss_dssp             EEEEEEESSCCGGGC-EEEEEEEEETT
T ss_pred             cceEEEECCCCcccC-ceEEEEEecCC
Confidence            256799999999999 99999999987

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.70  E-value=9e-17  Score=119.68  Aligned_cols=131  Identities=21%  Similarity=0.274  Sum_probs=87.8

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec---------------------------------CCceE
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID---------------------------------NQDFV   63 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~---------------------------------~~~~v   63 (167)
                      |.++.+..|+++.|.|.+.+.+.+.+..|.|+|+++..+...                                 ..+.+
T Consensus         8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I   87 (225)
T 4fmk_A            8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF   87 (225)
T ss_dssp             CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred             CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence            456889999999999999888776556799999876543210                                 00011


Q ss_pred             ------EEeeeEEEecC--------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeE
Q psy12724         64 ------VSQSYTVNIMD--------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELF  111 (167)
Q Consensus        64 ------~~g~y~c~~~~--------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~  111 (167)
                            .+|.|.|.+.+                          .....++.+.+.|.+.+  +.|.|.+.|.++++....
T Consensus        88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~--~~P~~~~~w~~~~~~~~~  165 (225)
T 4fmk_A           88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTG--GRPPARITWISSLGGEAK  165 (225)
T ss_dssp             CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEE--EBSCCEEEEECSSCCEEE
T ss_pred             ccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecC--CCCCCEEEEEECCccccC
Confidence                  27999998742                          11135777788887643  458889999998743322


Q ss_pred             Eee-eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        112 VDM-TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       112 ~~~-~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ... ....++.+.+  .+.|.|.+++.+|+ |.|+|.|.|..
T Consensus       166 ~~~~~~~~~~~~~~--~s~L~i~~~~~~d~-g~YtC~a~N~~  204 (225)
T 4fmk_A          166 DTQEPGIQAGTVTI--ISRYSLVPVGRADG-VKVTCRVEHES  204 (225)
T ss_dssp             EEEEECSSTTCEEE--EEEEEECCCGGGTT-CEEEEEEECTT
T ss_pred             CcceEEecCCCEEE--EEEEEEeeCCHHHC-CEEEEEEEcCC
Confidence            110 0011222322  23699999999998 99999999976

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.70  E-value=6.4e-16  Score=117.84  Aligned_cols=131  Identities=20%  Similarity=0.371  Sum_probs=87.8

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cce-----------------------eee-cCCc-eE---
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQ-----------------------YQI-DNQD-FV---   63 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~-----------------------~~~-~~~~-~v---   63 (167)
                      +...|.++.+.+|+++.|.|. .+.+.   +.|.|+|++ +..                       +.. +... .+   
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~-~~~~~---~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~   78 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCN-QTNNH---NNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILE   78 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEE-ECSCC---SEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEES
T ss_pred             ceECccceEEeCCCEEEEEee-cCCCC---ccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEe
Confidence            456788899999999999999 55543   579999852 110                       000 0001 11   


Q ss_pred             -----EEeeeEEEecC------------------------------------------eEEEeCCcEEEEeeeCCccCCc
Q psy12724         64 -----VSQSYTVNIMD------------------------------------------EHVLKGNSAVLKCHIPSFVADY   96 (167)
Q Consensus        64 -----~~g~y~c~~~~------------------------------------------~~v~~G~~a~l~C~~~~~~~~p   96 (167)
                           .+|.|.|.+.+                                          ..+.+|+++.|.|.+.+   .|
T Consensus        79 ~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~---~p  155 (238)
T 2p1y_A           79 LATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYEN---SA  155 (238)
T ss_dssp             SCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCC---TT
T ss_pred             cCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEec---CC
Confidence                 27999997632                                          12457999999999984   47


Q ss_pred             ceeEEEEeCCC-ee---eEEeee---ecCCceEEEcc-----CCeEEEeecCcCCCCcceEEEeeec
Q psy12724         97 VAVESWISDQG-EE---LFVDMT---ESTDGKYLVLP-----SGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        97 ~p~i~W~k~~~-~~---l~~~~~---~~~~~r~~~~~-----~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      .|.++|+|++. ..   +.....   ....+|+.+..     .+.|.|.+++.+|+ |.|.|.|.|.
T Consensus       156 ~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~  221 (238)
T 2p1y_A          156 FDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDS-ATYFCAAIDT  221 (238)
T ss_dssp             CCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGC-EEEEEEEEET
T ss_pred             CCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHC-EEEEEEEeeC
Confidence            88999999641 11   111000   01245676642     24799999999999 9999999998

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.70  E-value=1.4e-16  Score=124.01  Aligned_cols=140  Identities=19%  Similarity=0.253  Sum_probs=95.7

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC------ceE--------EEeeeEEEec-C---
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ------DFV--------VSQSYTVNIM-D---   74 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~------~~v--------~~g~y~c~~~-~---   74 (167)
                      |...+.+..+.+|+++.|.|.+.+.+.+  +.+.|++.++..+..+..      ..+        ..|.|+|.+. +   
T Consensus        92 ~~~~~~~~~v~~g~~v~L~C~~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~  169 (289)
T 3ejj_X           92 WNLLAQEVTVVEGQEAVLPCLITDPALK--DSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRE  169 (289)
T ss_dssp             EEESCSEEEEETTSCEEECEEESCGGGG--GSEEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             eecccceEEEecCCceEeEEEccCCCcc--eEEEEEecCCeecCCCccEEECCCCCEEEeecccccCEEEEEEEEeCCCc
Confidence            6667788899999999999999976543  349998766654432111      111        2699999874 1   


Q ss_pred             --------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeee-ecCCceEEEccC
Q psy12724         75 --------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMT-ESTDGKYLVLPS  127 (167)
Q Consensus        75 --------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~-~~~~~r~~~~~~  127 (167)
                                                ..+.+|+++.|.|.+.+  +.|.|.++|+|++ ..+..... ......  ...+
T Consensus       170 ~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~--~~p~~~i~W~~~~-~~~~~~~~~~~~~~~--~~~~  244 (289)
T 3ejj_X          170 STSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATN--AEVGFNVILKRGD-TKLEIPLNSDFQDNY--YKKV  244 (289)
T ss_dssp             EECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEE--SSSCCEEEEEETT-EECCCCEEEEECSSS--EEEE
T ss_pred             cccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCC--CCCceEEEEEECC-EEeeccCCcccccce--EEee
Confidence                                      11247999999999974  2588999999997 44421100 000111  1225


Q ss_pred             CeEEEeecCcCCCCcceEEEeeecC---cceEEEee
Q psy12724        128 GELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       128 g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                      +.|.|.+++.+|+ |.|+|.|.|..   +..+.|..
T Consensus       245 ~~L~i~~v~~~d~-G~Y~C~a~N~~G~~~~s~~L~~  279 (289)
T 3ejj_X          245 RALSLNAVDFQDA-GIYSCVASNDVGTRTATMNFQV  279 (289)
T ss_dssp             EEEEESSCCSSSC-EEEEEEEECSSCEEEEEEEEEC
T ss_pred             EEEEEEeecccCC-EEEEEEEEcCCCCccccEEEEE
Confidence            6899999999998 99999999997   33445544

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.70  E-value=4.1e-16  Score=115.28  Aligned_cols=116  Identities=13%  Similarity=0.138  Sum_probs=79.8

Q ss_pred             eEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCcee--------eecCCc-------eE--------EEeeeEEEecC
Q psy12724         18 YDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQY--------QIDNQD-------FV--------VSQSYTVNIMD   74 (167)
Q Consensus        18 ~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~--------~~~~~~-------~v--------~~g~y~c~~~~   74 (167)
                      +.+.+.+|+++.|.|.+.+... +.+.|.|+|++....        .+...|       .+        .+|.|+|.+.+
T Consensus         4 ~~v~~~~G~~v~L~c~~~~~~~-~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n   82 (176)
T 1hng_A            4 GTVWGALGHGINLNIPNFQMTD-DIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYS   82 (176)
T ss_dssp             EEEEEETTSCEEECCTTCCCCT-TEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEE
T ss_pred             eEEEEEcCCcEEEcCCCCCccc-ccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEe
Confidence            4577899999999996543212 246899999863211        111111       11        27999998742


Q ss_pred             ----------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEE
Q psy12724         75 ----------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHI  132 (167)
Q Consensus        75 ----------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I  132 (167)
                                            .....+.++.|.|.+.+   .|.|.++|+||+ ..+..      +        ..+.|
T Consensus        83 ~~g~~~~~~~~~l~V~~~~~~p~i~~~~~~v~L~C~~~g---~p~p~i~W~~~g-~~l~~------~--------~~~~i  144 (176)
T 1hng_A           83 TNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLE---GTDVELKLYQGK-EHLRS------L--------RQKTM  144 (176)
T ss_dssp             TTCCEEEEEEEEEEEECCCCCCEEEEETTTTEEEEECSS---CSSCEEEEEETT-EEEEE------E--------SSSEE
T ss_pred             CCCCEEEEEEEEEEEeCCCCCCEEEecCCcEEEEEEecC---CCCcEEEEEECC-EECCC------C--------CcEEE
Confidence                                  01123567999999984   588999999997 55532      1        12567


Q ss_pred             eecCcCCCCcceEEEeeecCc
Q psy12724        133 RDVGPEDGYKSYQCRTKHRLT  153 (167)
Q Consensus       133 ~~v~~~D~~G~Y~C~a~n~~~  153 (167)
                      ++++.+|+ |.|+|.|.|.++
T Consensus       145 ~~~~~~d~-G~Y~C~a~N~~g  164 (176)
T 1hng_A          145 SYQWTNLR-APFKCKAVNRVS  164 (176)
T ss_dssp             EEECSCCS-SCEEEEEEETTE
T ss_pred             EEEEccCC-eEEEEEEEecCC
Confidence            78999998 999999999983

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.69  E-value=3e-16  Score=123.53  Aligned_cols=66  Identities=21%  Similarity=0.371  Sum_probs=55.2

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC-C---eEEEeecCcCCCCcceEEEeeec
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS-G---ELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~-g---~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      .+.+|+++.|.|.+.   |+|.|.++|+|++ ..+.      .+.++.+..+ |   .|.|.+++.+|+ |.|+|.|.|.
T Consensus       233 ~v~~g~~~~l~C~~~---g~p~p~i~W~~~g-~~~~------~~~~~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~a~N~  301 (317)
T 2y25_A          233 TIQEGKALNLTCNVW---GDPPPEVSWLKNE-KALA------SDDHCNLKFEAGRTAYFTINGVSTADS-GKYGLVVKNK  301 (317)
T ss_dssp             EEETTSBBCEEEEEE---CSSCCEEEEEESS-SEEC------CCSSEEECCBTTTEEEEEEBSCCSTTC-EEEEEEEEET
T ss_pred             EEEcCCEEEEEEEEe---cCCCCEEEEEECC-EeCC------CCCcEEEEEcCCCEEEEEECCCCHHHC-EEEEEEEEeC
Confidence            567899999999998   4599999999998 4553      3556766544 5   899999999998 9999999998


Q ss_pred             C
Q psy12724        152 L  152 (167)
Q Consensus       152 ~  152 (167)
                      .
T Consensus       302 ~  302 (317)
T 2y25_A          302 Y  302 (317)
T ss_dssp             T
T ss_pred             C
Confidence            7

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.69  E-value=6.7e-16  Score=120.80  Aligned_cols=123  Identities=16%  Similarity=0.266  Sum_probs=94.7

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCcee--eecCCceE-------EEeeeEEEecC-------
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQY--QIDNQDFV-------VSQSYTVNIMD-------   74 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~--~~~~~~~v-------~~g~y~c~~~~-------   74 (167)
                      +.+...+.+..+.+|+++.|.|.+.+       .+.|+|++....  ..++....       ..|.|+|.+.+       
T Consensus        13 P~i~~~~~~~~v~~G~~v~l~C~~~~-------~i~W~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ng~~~~~~   85 (290)
T 2o26_X           13 PSIHPAQSELIVEAGDTLSLTCIDPD-------FVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIY   85 (290)
T ss_dssp             CEESSCSSEEEEETTSCEEEEEECTT-------EEEEEEECSSSCEEEECSSEEEETTCCGGGCEEEEEEESSSCEEEEE
T ss_pred             CEEeCCCCeEEEcCCCcEEEEECCCC-------cEEEecCCcceeeecCCCceEEEeccCHHhCeEEEEEeeCCccEEEE
Confidence            45667788899999999999999987       499999976441  11221111       27999998732       


Q ss_pred             ---------------eEEEeCCcEEEEeeeCCccCCcc-eeEEEE-eCCCeeeEEeeeecCCceEEEccCCeEEEeecCc
Q psy12724         75 ---------------EHVLKGNSAVLKCHIPSFVADYV-AVESWI-SDQGEELFVDMTESTDGKYLVLPSGELHIRDVGP  137 (167)
Q Consensus        75 ---------------~~v~~G~~a~l~C~~~~~~~~p~-p~i~W~-k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~  137 (167)
                                     ..+.+|+++.|.|.+.+    |. |.++|+ +|+ ..+.      .+.++....++.|.|.+++.
T Consensus        86 l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~----p~~~~v~W~~~~g-~~l~------~~~~~~~~~~~~L~i~~v~~  154 (290)
T 2o26_X           86 VFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD----PQVSQYSLIECDG-KSLP------TDLTFVPNPKAGITIKNVKR  154 (290)
T ss_dssp             EEEECSSCCBCCCCCEEEETTSCEEECCCBSC----CSCEEEEEEETTS-CCCC------TTCEEEEETTTEEEEESCCG
T ss_pred             EEEeCCCcccccccceEEecCCeEEEeCcCCC----CCCceEEEEeCCC-cCCC------CCCceeeCCCCCEEEecccH
Confidence                           34567999999999973    77 899995 555 5552      35677777888999999999


Q ss_pred             CCCCc-ceEEEeeecC
Q psy12724        138 EDGYK-SYQCRTKHRL  152 (167)
Q Consensus       138 ~D~~G-~Y~C~a~n~~  152 (167)
                      +|+ | .|+|.|.|..
T Consensus       155 ~d~-G~~Y~C~a~n~~  169 (290)
T 2o26_X          155 AYH-RLCVRCAAQRDG  169 (290)
T ss_dssp             GGT-TCEEEEEEEETT
T ss_pred             HHC-CCEEEEEEEECC
Confidence            999 9 9999999975

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.69  E-value=1.4e-16  Score=127.70  Aligned_cols=124  Identities=19%  Similarity=0.267  Sum_probs=91.4

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCC------CcceeeEEeeCCCceeeec-----CCceE------EEe-eeEEEecCe---
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVS------DHLDVVSWADTDGGQYQID-----NQDFV------VSQ-SYTVNIMDE---   75 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~------~~~~~i~W~k~~~~~~~~~-----~~~~v------~~g-~y~c~~~~~---   75 (167)
                      ..+..|.+|+++.|.|.+.+.+.      .+-+.++|+|++......+     +...+      .+| .|+|.+.+.   
T Consensus        36 ~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~  115 (329)
T 3oq3_B           36 TMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGD  115 (329)
T ss_dssp             EEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTTEETTEEEESSCCGGGGGCCEEEEEECTTSC
T ss_pred             cceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCceeecceEEEcCCChHhCCCcEEEEEEeCCCc
Confidence            36788999999999999987543      1135799999975432211     11111      279 899988541   


Q ss_pred             -------E----------------EEeCCcEEEEeeeCCccCCc-ceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEE
Q psy12724         76 -------H----------------VLKGNSAVLKCHIPSFVADY-VAVESWISDQGEELFVDMTESTDGKYLVLPSGELH  131 (167)
Q Consensus        76 -------~----------------v~~G~~a~l~C~~~~~~~~p-~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~  131 (167)
                             .                +.+|+++.|.|.+.+   .| .|.++|+|++ ..+.     ..+.++... ++.|.
T Consensus       116 ~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g---~p~~~~i~W~k~~-~~l~-----~~~~~~~~~-~~~L~  185 (329)
T 3oq3_B          116 CVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILY---AKHYNNITWYKNN-QELI-----IDGTKYSQS-GQNLI  185 (329)
T ss_dssp             EEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCS---CCCCCEEEEEETT-EECC-----CSSSSEEEE-TTEEE
T ss_pred             eeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCC---CCCCceEEEEECC-ccCC-----CCCceEecC-CCEEE
Confidence                   1                124999999999984   48 8999999998 4542     135567655 78999


Q ss_pred             EeecCcCCCCcceEEEeeec
Q psy12724        132 IRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus       132 I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      |.+++.+|+ |.|+|.|.|.
T Consensus       186 I~~v~~~D~-G~Y~C~a~n~  204 (329)
T 3oq3_B          186 IHNPELEDS-GRYDCYVHYD  204 (329)
T ss_dssp             ECSCCGGGC-EEEEEEEEEC
T ss_pred             EeecChhhC-EEEEEEEEec
Confidence            999999999 9999999996

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.69  E-value=8.1e-17  Score=122.52  Aligned_cols=130  Identities=18%  Similarity=0.331  Sum_probs=90.0

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC----------ceE--------EEeeeEEEecC----
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ----------DFV--------VSQSYTVNIMD----   74 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~----------~~v--------~~g~y~c~~~~----   74 (167)
                      +....+.+|+++.|.|.+.+.+.   +.+.|+|++. .+.....          ..+        ..|.|+|.+.+    
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p~---~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~   97 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNPT---PSISWLKNGR-EFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS   97 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSSC---CEEEEEETTE-ECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CcceEEcCCCeEEEEEEecCCCC---ceeEEEECCc-ccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCc
Confidence            45788999999999999998765   4799999854 3322110          011        26999998632    


Q ss_pred             --------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEe----CCCeeeEEeeeecCCceEE-
Q psy12724         75 --------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWIS----DQGEELFVDMTESTDGKYL-  123 (167)
Q Consensus        75 --------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k----~~~~~l~~~~~~~~~~r~~-  123 (167)
                                                ..+.+|+++.|.|.+.   +.|.|.++|+|    ++ ..+.+     .+..+. 
T Consensus        98 ~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~---~~p~p~v~W~~~~~~~g-~~~~~-----~~~~~~~  168 (241)
T 3grw_A           98 IRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY---SDAQPHIQWLKHVEVNG-SKVGP-----DGTPYVT  168 (241)
T ss_dssp             EEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEE---CSSCCEEEEEEECCSSS-CSSCT-----TTCCCEE
T ss_pred             eEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEe---cCCCCEEEEEEcccCCC-cccCC-----CCceeee
Confidence                                      2234699999999997   45888999999    55 34421     111111 


Q ss_pred             E---------ccCCeEEEeecCcCCCCcceEEEeeecC---cceEEEee
Q psy12724        124 V---------LPSGELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       124 ~---------~~~g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                      .         ..++.|.|.+++.+|+ |.|+|.|.|..   +..+.|.+
T Consensus       169 ~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~N~~g~~~~~~~l~V  216 (241)
T 3grw_A          169 VLKSWISESVEADVRLRLANVSERDG-GEYLCRATNFIGVAEKAFWLSV  216 (241)
T ss_dssp             EEEEEECSBSEEEEEEEECSCCGGGC-EEEEEEEECSSCEEEEEEEEEC
T ss_pred             eeeEeeeeecCCceEEEECcCCcccC-cEEEEEEecCcceEEEEEEEEe
Confidence            1         1245799999999998 99999999987   33444444

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.69  E-value=8e-17  Score=136.21  Aligned_cols=130  Identities=13%  Similarity=0.171  Sum_probs=96.0

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCce-ee-e-----cCC-c-----eE--------EEeeeE
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQ-YQ-I-----DNQ-D-----FV--------VSQSYT   69 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~-~~-~-----~~~-~-----~v--------~~g~y~   69 (167)
                      +.+...+.+..+.+|+++.|.|.+.+.+.+  ..+.|.|++... +. .     ..+ .     .+        ..|.|+
T Consensus       212 p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p--~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~  289 (524)
T 2ec8_A          212 PVVSVSKASYLLREGEEFTVTCTIKDVSSS--VYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFM  289 (524)
T ss_dssp             CEEECSCSEEEEETTSCEEEEEEEEESSTT--CEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEE
T ss_pred             CcEEecCCcceEEcCCcEEEEEEEecCCCc--EEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEE
Confidence            456777788899999999999999987654  239999997651 11 1     000 0     11        279999


Q ss_pred             EEecC----------------------------eEEEeCCcEEEEeeeCCccCCccee-EEEEeCCCeeeEEeeeecCCc
Q psy12724         70 VNIMD----------------------------EHVLKGNSAVLKCHIPSFVADYVAV-ESWISDQGEELFVDMTESTDG  120 (167)
Q Consensus        70 c~~~~----------------------------~~v~~G~~a~l~C~~~~~~~~p~p~-i~W~k~~~~~l~~~~~~~~~~  120 (167)
                      |.+.+                            ..+.+|+++.|.|.+.+   .|.|. ++|+|++ ..+..     ...
T Consensus       290 C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g---~P~p~~v~W~k~g-~~~~~-----~~~  360 (524)
T 2ec8_A          290 CYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEA---FPKPEHQQWIYMN-RTFTD-----KWE  360 (524)
T ss_dssp             EEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEE---ESCCCEEEEESSS-CBCSS-----SBC
T ss_pred             EEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEee---cCCCcEEEEEECC-eeccC-----Ccc
Confidence            98633                            34567999999999974   58888 9999997 45531     223


Q ss_pred             eEEEccC-------CeEEEeecCcCCCCcceEEEeeecC
Q psy12724        121 KYLVLPS-------GELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       121 r~~~~~~-------g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++....+       +.|.|.+++.+|+ |.|+|.|.|..
T Consensus       361 ~~~~~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~a~N~~  398 (524)
T 2ec8_A          361 DYPKSENESNIRYVSELHLTRLKGTEG-GTYTFLVSNSD  398 (524)
T ss_dssp             CEESCCSSSCCEEEEEEEECSCCGGGC-EEEEEEEECSS
T ss_pred             ceeEEccCCCceeEEEEEEeecCcccC-eEEEEEEEecC
Confidence            5655543       3799999999999 99999999987

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.69  E-value=6.9e-17  Score=130.88  Aligned_cols=132  Identities=15%  Similarity=0.318  Sum_probs=97.0

Q ss_pred             eeeceeeEEeEEEE---EeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec-CCc--------eE-------EEeeeE
Q psy12724          9 ISQYYEAQVYDVFV---IKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID-NQD--------FV-------VSQSYT   69 (167)
Q Consensus         9 ~~~~~~~~~~~~~v---~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~-~~~--------~v-------~~g~y~   69 (167)
                      ..+.|..+|.+..+   .+|+++.|.|.+.+.|.   +.+.|+|++. .+... ..+        .+       .+|.|+
T Consensus         3 ~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~---~~v~W~k~g~-~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~   78 (382)
T 1cs6_A            3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPP---ATYRWKMNGT-ELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQ   78 (382)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESC---CEEEEEETTE-ECCCSTTSSEEEETTEEEEESCCHHHHCEEEE
T ss_pred             CCCEEEECCCcEEEecCCCCCcEEEEEEecCCCC---CEEEEEECCE-ECCcCCCccEEeeCCeEEEecccccccCEEEE
Confidence            35678999999887   78999999999987764   4799999854 33221 111        11       269999


Q ss_pred             EEecC---------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceE
Q psy12724         70 VNIMD---------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY  122 (167)
Q Consensus        70 c~~~~---------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~  122 (167)
                      |.+.+                           ..+.+|+++.|.|.+.+  +.|.+.++|+|++. .+..    ..++++
T Consensus        79 C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~--~~p~~~i~W~~~~~-~~~~----~~~~~~  151 (382)
T 1cs6_A           79 CVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPP--HYPALSYRWLLNEF-PNFI----PADGRR  151 (382)
T ss_dssp             EEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCS--EESCCEEEEEESST-TCBC----CCCSSE
T ss_pred             EEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCC--CCCCcEEEEEECCC-cccc----ccCceE
Confidence            98732                           24568999999999753  34788999999974 4321    123444


Q ss_pred             EEc-cCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        123 LVL-PSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       123 ~~~-~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+. .++.|.|.+++.+|+ |.|+|.|.|..
T Consensus       152 ~~~~~~~~L~i~~~~~~d~-G~Y~C~~~n~~  181 (382)
T 1cs6_A          152 FVSQTTGNLYIAKTEASDL-GNYSCFATSHI  181 (382)
T ss_dssp             EECTTTCCEEESSCCGGGC-EEEEEEEEEEE
T ss_pred             EEecCceEEEEEeeCcccC-eeEEEEEEEcc
Confidence            444 458999999999999 99999999876

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.69  E-value=2.7e-16  Score=121.53  Aligned_cols=134  Identities=21%  Similarity=0.296  Sum_probs=86.8

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cce---eee-c-------CCc----------eE--------E
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQ---YQI-D-------NQD----------FV--------V   64 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~---~~~-~-------~~~----------~v--------~   64 (167)
                      .++..+.|.+|+++.|.|.+.+...+ .+.+.|+|.+ +..   +.. +       ..|          .+        .
T Consensus         7 ~~p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   85 (256)
T 3ux9_B            7 TQPPSVSGAPGQRVTISCSGSSSNIG-SNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSED   85 (256)
T ss_dssp             BCCSEEEECTTCCEEEEEECCTTTTT-TSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             ecCCcEEEcCCCcEEEEEecCCCCCC-CceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhh
Confidence            45667899999999999999876211 2479999853 111   100 0       011          11        2


Q ss_pred             EeeeEEEecC------------------------------------------------eEEEeCCcEEEEeeeCCccCCc
Q psy12724         65 SQSYTVNIMD------------------------------------------------EHVLKGNSAVLKCHIPSFVADY   96 (167)
Q Consensus        65 ~g~y~c~~~~------------------------------------------------~~v~~G~~a~l~C~~~~~~~~p   96 (167)
                      +|.|.|.+.+                                                ..+.+|+++.|.|.+.+. ..+
T Consensus        86 sG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~-~~~  164 (256)
T 3ux9_B           86 EADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGF-TFS  164 (256)
T ss_dssp             CEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESS-CGG
T ss_pred             CEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCC-ccc
Confidence            7999998642                                                123469999999999753 112


Q ss_pred             ceeEEEEeCC-CeeeEEe--e---------eecCCceEEEccCC-----eEEEeecCcCCCCcceEEEeeec
Q psy12724         97 VAVESWISDQ-GEELFVD--M---------TESTDGKYLVLPSG-----ELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        97 ~p~i~W~k~~-~~~l~~~--~---------~~~~~~r~~~~~~g-----~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      .+.+.|+|++ +..+...  .         .+...+|+.+..++     .|.|.+++.+|+ |.|.|.|.|.
T Consensus       165 ~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~  235 (256)
T 3ux9_B          165 SYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDT-AVYYCARYID  235 (256)
T ss_dssp             GSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEEET
T ss_pred             ccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhC-EEEEEEEEcC
Confidence            7899999863 1222100  0         00113477766433     499999999999 9999999996

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.69  E-value=5.6e-16  Score=122.41  Aligned_cols=125  Identities=14%  Similarity=0.211  Sum_probs=86.9

Q ss_pred             eEEEEEeCCcEEEEeec------CCCCCCcceeeEEeeCCCceeeecCCc------eE--------EEeeeEEEec-C--
Q psy12724         18 YDVFVIKGNAAVFKCNL------PSFVSDHLDVVSWADTDGGQYQIDNQD------FV--------VSQSYTVNIM-D--   74 (167)
Q Consensus        18 ~~~~v~~G~~~~l~C~a------~~~~~~~~~~i~W~k~~~~~~~~~~~~------~v--------~~g~y~c~~~-~--   74 (167)
                      .+..+.+|+++.|.|.+      .+.|.   +.++|+|++. .+..+..+      .+        ..|.|+|.+. +  
T Consensus       111 ~~~~~~~g~~v~l~C~~~~~~~~~g~p~---~~i~W~k~~~-~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~  186 (315)
T 1itb_B          111 FKQKLPVAGDGGLVCPYMEFFKNENNEL---PKLQWYKDCK-PLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYL  186 (315)
T ss_dssp             EEEEEETTSCEEEECSSCTTTCTTTTCC---CCCEEEETTE-ECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred             cceEEecCCCeEEEEecccccccCCCCC---CEEEEEECCE-ECCCccceEeecCceEEEEeceehhCcEEEEEEEcCCC
Confidence            45678999999999998      56554   4799999854 34221111      11        2699999875 2  


Q ss_pred             --------------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceE
Q psy12724         75 --------------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY  122 (167)
Q Consensus        75 --------------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~  122 (167)
                                                      ..+.+|+++.|.|.+.   |.|.|.++|+||+ ..+..... ....++
T Consensus       187 g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~---g~P~p~i~W~~~g-~~i~~~~~-~~~~~~  261 (315)
T 1itb_B          187 GKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVT---GQLSDIAYWKWNG-SVIDEDDP-VLGEDY  261 (315)
T ss_dssp             TEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEE---ECTTSEEEEEETT-EECCTTCS-SEEEEE
T ss_pred             CcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEe---cCCCCeeEEEECC-EECCcccc-cccccc
Confidence                                            1234799999999997   4588999999997 55532100 000123


Q ss_pred             EEccC----------CeEEEeecCcCC-CCcceEEEeeecC
Q psy12724        123 LVLPS----------GELHIRDVGPED-GYKSYQCRTKHRL  152 (167)
Q Consensus       123 ~~~~~----------g~L~I~~v~~~D-~~G~Y~C~a~n~~  152 (167)
                      ....+          +.|.|.+++.+| + |.|+|.|.|..
T Consensus       262 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~~-G~Y~C~a~N~~  301 (315)
T 1itb_B          262 YSVENPANKRRSTLITVLNISEIESRFYK-HPFTCFAKNTH  301 (315)
T ss_dssp             EEECCSSCGGGEEEEEEEEESSCCGGGGT-SCEEEEEECTT
T ss_pred             eeeeccCCCceeEEEEEEEEeecCHHHcC-CceEEEEecCC
Confidence            22222          389999999999 9 99999999987

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.69  E-value=1.8e-16  Score=125.70  Aligned_cols=133  Identities=17%  Similarity=0.204  Sum_probs=91.9

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCC-CCCCcceeeEEeeCCCceeee-------cCCce----E--------EEeeeEE
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPS-FVSDHLDVVSWADTDGGQYQI-------DNQDF----V--------VSQSYTV   70 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~-~~~~~~~~i~W~k~~~~~~~~-------~~~~~----v--------~~g~y~c   70 (167)
                      +.+...+....+..|+.+.+.|.+.+ .|.   +.+.|++++......       ++...    +        ..|.|+|
T Consensus       118 P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~---~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C  194 (313)
T 4fqp_A          118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPP---AQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTC  194 (313)
T ss_dssp             CEEEEEECCBCCCSSCEEEEEEEEEEEBSC---CEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEE
T ss_pred             CcceecccceEeecCceEEEEEEccCccCC---cEEEeecCCccccccceeeeecccccccceeeeecccccccCeeEEE
Confidence            34455566666778999999999864 343   589999987643221       11111    1        1488999


Q ss_pred             EecC----------------------------eEEEeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeeeecCCce
Q psy12724         71 NIMD----------------------------EHVLKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMTESTDGK  121 (167)
Q Consensus        71 ~~~~----------------------------~~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~~~~~~r  121 (167)
                      .+.+                            ..+..|+++.|.|.+.   |+|.| .++|+|++ ..+.       .. 
T Consensus       195 ~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~---g~P~p~~v~W~~~~-~~l~-------~~-  262 (313)
T 4fqp_A          195 KVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDAR---SNPEPTGYNWSTTM-GPLP-------PF-  262 (313)
T ss_dssp             EEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEE---EESCCCEEEEEETT-BSCC-------TT-
T ss_pred             EEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEec---CCCCCcEEEEEECC-EECC-------Cc-
Confidence            8743                            1123588999999997   45888 59999998 4542       11 


Q ss_pred             EEEccCCeEEEeecCcCCCCcceEEEeeecC---cceEEEee
Q psy12724        122 YLVLPSGELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       122 ~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                       ....++.|.|.+++.+|+ |.|+|.|.|..   +..+.|.+
T Consensus       263 -~~~~~~~L~i~~v~~~d~-G~Y~C~a~N~~G~~~~~~~l~V  302 (313)
T 4fqp_A          263 -AVAQGAQLLIRPVDKPIN-TTLICNVTNALGARQAELTVQV  302 (313)
T ss_dssp             -EEEETTEEEECCCSSCCE-EEEEEEEECSSCEEEEEEEEEE
T ss_pred             -eEEeCCEEEECcCChhhC-EEEEEEEEeCCCcEEEEEEEEE
Confidence             123467999999999999 99999999987   33445554

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.69  E-value=1.2e-15  Score=117.38  Aligned_cols=133  Identities=14%  Similarity=0.221  Sum_probs=89.4

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC-c---eeee-c-------CCc----------eE-------
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG-G---QYQI-D-------NQD----------FV-------   63 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~-~---~~~~-~-------~~~----------~v-------   63 (167)
                      +...|.++.+.+|+++.|.|.+.+.+.+   .+.|+|++. .   .+.. +       ..+          .+       
T Consensus         7 v~~~p~~~~v~~G~~v~L~C~~~~~~~~---~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   83 (250)
T 3esu_F            7 LIQSTSSLSASLGDRVTISCRASQDIRN---YLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQ   83 (250)
T ss_dssp             EECSCSEEEECTTCCEEEEEEESSCCTT---CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EEecCCEEEeeCCCcEEEEEEecccCCc---eEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCCh
Confidence            4456778899999999999999988764   799998531 1   0100 0       011          11       


Q ss_pred             -EEeeeEEEecC---------------------------------------------eEEEeCCcEEEEeeeCCccCCcc
Q psy12724         64 -VSQSYTVNIMD---------------------------------------------EHVLKGNSAVLKCHIPSFVADYV   97 (167)
Q Consensus        64 -~~g~y~c~~~~---------------------------------------------~~v~~G~~a~l~C~~~~~~~~p~   97 (167)
                       .+|.|.|.+.+                                             ..+.+|+++.|.|.+.+. ..+.
T Consensus        84 ~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~-~~~~  162 (250)
T 3esu_F           84 EDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGY-AFSS  162 (250)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCST-TGGG
T ss_pred             hhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCC-cccC
Confidence             27999998732                                             123579999999999753 1237


Q ss_pred             eeEEEEeCC-CeeeEEe--e---------eecCCceEEEccCC-----eEEEeecCcCCCCcceEEEeee
Q psy12724         98 AVESWISDQ-GEELFVD--M---------TESTDGKYLVLPSG-----ELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus        98 p~i~W~k~~-~~~l~~~--~---------~~~~~~r~~~~~~g-----~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      |.+.|+|+. +..+...  .         .....+|+.+..++     .|.|.+++.+|+ |.|.|.|.|
T Consensus       163 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~  231 (250)
T 3esu_F          163 SWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDS-AVYFCARSG  231 (250)
T ss_dssp             SEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEEC
T ss_pred             CEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccC-EEEEEEEec
Confidence            899999972 1222110  0         00123677776443     699999999999 999999997

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.68  E-value=3e-16  Score=124.93  Aligned_cols=131  Identities=18%  Similarity=0.295  Sum_probs=90.6

Q ss_pred             eEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecC----------CceE--------EEeeeEEEecC-----
Q psy12724         18 YDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN----------QDFV--------VSQSYTVNIMD-----   74 (167)
Q Consensus        18 ~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~----------~~~v--------~~g~y~c~~~~-----   74 (167)
                      ....+.+|+++.|.|.+.+.|.   +.+.|+|++. .+..+.          ...+        ..|.|+|.+.+     
T Consensus       131 ~~~~v~~g~~v~l~C~~~g~p~---~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  206 (334)
T 1ry7_B          131 KLLAVPAANTVRFRCPAAGNPT---PSISWLKNGR-EFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSI  206 (334)
T ss_dssp             CEEEEETTCCEEEECCCCCSSC---CEEECCBTTB-CCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEE
T ss_pred             eeEEecCCCcEEEEEEccCCCC---CeEEEEECCE-ECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCE
Confidence            3567889999999999998865   4799999854 332210          0111        27999997632     


Q ss_pred             -------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEe----CCCeeeEEeeeecCCceEEEc
Q psy12724         75 -------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWIS----DQGEELFVDMTESTDGKYLVL  125 (167)
Q Consensus        75 -------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k----~~~~~l~~~~~~~~~~r~~~~  125 (167)
                                               ..+.+|+++.|.|.+.   ++|.|.++|+|    |+ ..+...    ...++.+.
T Consensus       207 ~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~---g~p~p~v~W~~~~~~~g-~~~~~~----~~~~~~~~  278 (334)
T 1ry7_B          207 RQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY---SDAQPHIQWLKHVEVNG-SKVGPD----GTPYVTVL  278 (334)
T ss_dssp             EEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCB---CSSCEEEEEEECCCGGG-CSBCTT----SSBCCCCC
T ss_pred             EEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEe---cCCCCeEEEEECCcCCC-ccccCC----CCeeEEEe
Confidence                                     3456799999999997   45999999999    44 344211    11122222


Q ss_pred             cC----------CeEEEeecCcCCCCcceEEEeeecC---cceEEEeee
Q psy12724        126 PS----------GELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSAT  161 (167)
Q Consensus       126 ~~----------g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~~  161 (167)
                      .+          +.|.|.+++.+|+ |.|+|.|.|..   ...+.|.+.
T Consensus       279 ~~~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~a~N~~G~~~~~~~l~V~  326 (334)
T 1ry7_B          279 KTAGANTTDKELEVLSLHNVTFEDA-GEYTCLAGNSIGFSHHSAWLVVL  326 (334)
T ss_dssp             CCSSCSCSCTTCCCEEECSCCTTSC-SEEEEEEEESSCCEEEEEEEEEE
T ss_pred             ecCccccccccccEEEEccCCHHHC-EEEEEEEeCCCCeEEEEEEEEEE
Confidence            22          2799999999998 99999999987   334455553

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.67  E-value=3.4e-16  Score=123.21  Aligned_cols=130  Identities=12%  Similarity=0.181  Sum_probs=92.5

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC-------ceE--------EEeeeEEEecCe
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ-------DFV--------VSQSYTVNIMDE   75 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~-------~~v--------~~g~y~c~~~~~   75 (167)
                      +.|. .+.+..+.+|+++.|.|.+.+....  +.+.|+|++. .+..+..       ..+        ..|.|+|.+.+.
T Consensus         8 P~~~-~~~~~~v~~G~~v~l~C~~~~~~p~--~~v~W~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   83 (317)
T 2y25_A            8 PHFV-EYLSWEVTGECNVLLKCKVANIKKE--THIVWYKDER-EISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDD   83 (317)
T ss_dssp             CEEE-EEEEEEEETTTEEEEEEEEESCCTT--CEEEEEETTE-EECCSCC-----CCEEEEETTCCSTTCSCEEEEEESS
T ss_pred             CcEe-eeeeEEECCCCeEEEEEEEcCCCCC--CEEEEEECCe-EcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECC
Confidence            4465 5557999999999999999877322  4799999854 3432111       111        279999998541


Q ss_pred             -------------------------EEEeCCcEEEEeeeCCcc-------CCcceeEEEEeCCCeeeEEeeeecCCceEE
Q psy12724         76 -------------------------HVLKGNSAVLKCHIPSFV-------ADYVAVESWISDQGEELFVDMTESTDGKYL  123 (167)
Q Consensus        76 -------------------------~v~~G~~a~l~C~~~~~~-------~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~  123 (167)
                                               .+..|+.+.|.|.+.+..       +.|.|.++|+|++ ..+.      .+.++.
T Consensus        84 ~g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~-~~~~------~~~~~~  156 (317)
T 2y25_A           84 RGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNG-SAIR------YSDRVK  156 (317)
T ss_dssp             SCEEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESS-SBCC------CCSSEE
T ss_pred             CCcEEEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECC-EECC------CCCCeE
Confidence                                     123788888888876310       1588999999998 4553      245565


Q ss_pred             EccCC---eEEEeecCcCCCCcceEEEeeecC
Q psy12724        124 VLPSG---ELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       124 ~~~~g---~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +..++   .|.|.+++.+|+ |.|+|.|.|..
T Consensus       157 ~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~  187 (317)
T 2y25_A          157 TGVTGEQIWLQINEPTPNDK-GKYVMELFDGK  187 (317)
T ss_dssp             EEECSSEEEEEEESCCGGGC-EEEEEEEECSS
T ss_pred             EeccCCEEEEEECcCCcccC-eeEEEEEEeCC
Confidence            55443   399999999999 99999999976

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.67  E-value=1.4e-16  Score=136.72  Aligned_cols=121  Identities=8%  Similarity=0.062  Sum_probs=90.6

Q ss_pred             EEeEEEEEeCCcEEEEeecC-CCCCCcceeeEEeeCCCceeeec---------CCc------eE--------EEeeeEEE
Q psy12724         16 QVYDVFVIKGNAAVFKCNLP-SFVSDHLDVVSWADTDGGQYQID---------NQD------FV--------VSQSYTVN   71 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~-~~~~~~~~~i~W~k~~~~~~~~~---------~~~------~v--------~~g~y~c~   71 (167)
                      .+.+..+.+|+++.|.|.+. +.|.   +.++|+|++.. +...         ..+      .+        .+|.|+|.
T Consensus       233 ~p~~~~v~~G~~v~L~C~~~~g~p~---p~i~W~k~g~~-l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~  308 (527)
T 3qs9_E          233 TLPQLFLKVGEPLWIRCKAVHVNHG---FGLTWELENKA-LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCS  308 (527)
T ss_dssp             SCCEEEECTTSCEEEEEEEEESSSC---CCEEEECSSSC-CCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCceEEeCCCeEEEEEEEccCCCC---eEEEEEECCEE-CCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEE
Confidence            45688899999999999997 6654   47999999653 2110         010      01        27999998


Q ss_pred             ecC------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC
Q psy12724         72 IMD------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS  127 (167)
Q Consensus        72 ~~~------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~  127 (167)
                      +.+                        ..+.+|+++.|.|.+.+   .|.|.++|+||+ ..+..      ..++ ...+
T Consensus       309 a~N~~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g---~P~p~i~W~k~g-~~l~~------~~~~-~~~~  377 (527)
T 3qs9_E          309 SSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKA---YPQIRCTWTFSR-KSFPC------EQKG-LDNG  377 (527)
T ss_dssp             ETTEEEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEE---ESCCEEEEEETT-EEEEC------BCCB-CSSS
T ss_pred             EEeCCCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEe---cCCCEEEEEECC-EECcC------Cccc-ccCC
Confidence            755                        12346999999999985   489999999997 56632      2232 2356


Q ss_pred             CeEEEeecCcCCCCcceEEEeeecC
Q psy12724        128 GELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       128 g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.|.|.+++.+|+ |.|+|.|.|..
T Consensus       378 ~~L~I~~v~~~D~-G~YtC~A~N~~  401 (527)
T 3qs9_E          378 YSISKFCNHKHQP-GEYIFHAENDD  401 (527)
T ss_dssp             SEEEEECCCTTCC-SCEEEEEEETT
T ss_pred             cEEEEecCCcccC-EEEEEEEEeCC
Confidence            7899999999999 99999999987

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.67  E-value=1.8e-15  Score=118.79  Aligned_cols=147  Identities=16%  Similarity=0.230  Sum_probs=97.4

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC-c---eeeec--------CCc----------eE-----
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG-G---QYQID--------NQD----------FV-----   63 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~-~---~~~~~--------~~~----------~v-----   63 (167)
                      ..+...|.++.+.+|+++.|.|.+.+.+.   +.+.|+|++. .   .+...        ..|          .+     
T Consensus        13 ~~v~~~p~~~~v~~G~~v~L~C~~~~~p~---~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   89 (276)
T 3auv_A           13 IQMTQSPSSLSASVGDRVTITCRASQDVS---TAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSL   89 (276)
T ss_dssp             CCEEEECSEEECCTTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             eeEEeCCCeEEEcCCCCEEEEeEcCCCCC---CcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccC
Confidence            34777888999999999999999988764   4799998642 1   11100        011          11     


Q ss_pred             ---EEeeeEEEecC----------------------------------------eEEEeCCcEEEEeeeCCccCCcceeE
Q psy12724         64 ---VSQSYTVNIMD----------------------------------------EHVLKGNSAVLKCHIPSFVADYVAVE  100 (167)
Q Consensus        64 ---~~g~y~c~~~~----------------------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i  100 (167)
                         .+|.|.|.+.+                                        ..+.+|+++.|.|.+.+. ..+.|.+
T Consensus        90 ~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~-~~~~~~v  168 (276)
T 3auv_A           90 QPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGF-TISDYWI  168 (276)
T ss_dssp             CGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESS-CGGGSEE
T ss_pred             ChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCc-cCCCCEE
Confidence               27999998632                                        123469999999999753 1116899


Q ss_pred             EEEeCC-Ceee--EEee---------eecCCceEEEccC-----CeEEEeecCcCCCCcceEEEeeec--------Ccce
Q psy12724        101 SWISDQ-GEEL--FVDM---------TESTDGKYLVLPS-----GELHIRDVGPEDGYKSYQCRTKHR--------LTGE  155 (167)
Q Consensus       101 ~W~k~~-~~~l--~~~~---------~~~~~~r~~~~~~-----g~L~I~~v~~~D~~G~Y~C~a~n~--------~~~~  155 (167)
                      +|+|++ +..+  ....         .+...+||.+..+     ..|.|.+++.+|+ |.|.|.|.|.        +...
T Consensus       169 ~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~a~n~~~~~~~~~fg~g  247 (276)
T 3auv_A          169 HWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDT-AVYYCARFVFFLPYAMDYWGQG  247 (276)
T ss_dssp             EEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEECSSTTCSCCCBCCC
T ss_pred             EEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHC-EEEEEEEEcCcCCcCceEECCC
Confidence            999963 1111  1000         0012457776643     2799999999999 9999999997        2445


Q ss_pred             EEEeeeC
Q psy12724        156 TRLSATK  162 (167)
Q Consensus       156 ~~l~~~~  162 (167)
                      ++|++.+
T Consensus       248 t~l~V~~  254 (276)
T 3auv_A          248 TLVTVSS  254 (276)
T ss_dssp             EEEEEC-
T ss_pred             EEEEEcc
Confidence            6777644

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.67  E-value=2.7e-16  Score=126.15  Aligned_cols=127  Identities=11%  Similarity=0.106  Sum_probs=88.7

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCC--------CcceeeEEeeCCCc-----eee--ecCCc------eE--------EEee
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVS--------DHLDVVSWADTDGG-----QYQ--IDNQD------FV--------VSQS   67 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~--------~~~~~i~W~k~~~~-----~~~--~~~~~------~v--------~~g~   67 (167)
                      .+++.|.+|+++.|.|.+.+.|.        .+.+.+.|+|++..     .+.  ....+      .+        .+|.
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   93 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGN   93 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEE
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEE
Confidence            45778999999999999998652        11258999998642     111  00111      11        2799


Q ss_pred             eEEEecC-----------------------------eEEEeCCcEEEEeeeCCc--cCCcceeEEEEeCCCeeeEEeeee
Q psy12724         68 YTVNIMD-----------------------------EHVLKGNSAVLKCHIPSF--VADYVAVESWISDQGEELFVDMTE  116 (167)
Q Consensus        68 y~c~~~~-----------------------------~~v~~G~~a~l~C~~~~~--~~~p~p~i~W~k~~~~~l~~~~~~  116 (167)
                      |+|.+.+                             ..+.+|+++.|.|.+...  .+.|.|.++|+||+ ..+.     
T Consensus        94 Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~-~~l~-----  167 (349)
T 4dep_C           94 YTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGC-YKIQ-----  167 (349)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETT-EECC-----
T ss_pred             EEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCC-EECC-----
Confidence            9998743                             134569999999985211  25699999999997 4542     


Q ss_pred             cCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        117 STDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       117 ~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                       ...++.. .+..|.|.+++.+|+ |.|+|.|.|..
T Consensus       168 -~~~~~~~-~~~~L~i~~v~~~d~-G~Y~C~a~n~~  200 (349)
T 4dep_C          168 -NFNNVIP-EGMNLSFLIALISNN-GNYTCVVTYPE  200 (349)
T ss_dssp             -SCSSEEE-ETTEEEEESCCGGGC-EEEEEEEEEEE
T ss_pred             -Cccceee-cCCEEEEeeeeecCC-cEEEEEEEEee
Confidence             2233332 345799999999999 99999999975

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.67  E-value=2e-15  Score=128.95  Aligned_cols=143  Identities=15%  Similarity=0.191  Sum_probs=97.7

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCce----eee--------------------cCCceE-------
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQ----YQI--------------------DNQDFV-------   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~----~~~--------------------~~~~~v-------   63 (167)
                      ..|+++.+.+|+++.|.|.+.+.+.+..+.+.|+|++...    +..                    ++...+       
T Consensus         5 ~~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~   84 (585)
T 2ocw_A            5 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ   84 (585)
T ss_pred             cCcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCc
Confidence            4678899999999999999998764333479999986421    100                    000011       


Q ss_pred             -EEeeeEEEecC-------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee---
Q psy12724         64 -VSQSYTVNIMD-------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM---  114 (167)
Q Consensus        64 -~~g~y~c~~~~-------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~---  114 (167)
                       .+|.|+|.+.+                         ..+.+|+++.|.|.+.+.  .|.+.++|+|+++.......   
T Consensus        85 ~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~--~~~~~v~W~k~~~~~~~~~~~~~  162 (585)
T 2ocw_A           85 DDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTE--NAQKRKSLYKQIGLYPVLVIDSS  162 (585)
T ss_pred             ccCEEEEEEcccCCCCceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCC--CCCccEEEEECCCCCceEEecCC
Confidence             37999998632                         356789999999999752  35678999999743211000   


Q ss_pred             ---eecCCceEEEccCC------eEEEeecCcCCCCcceEEEeeecC---cceEEEee
Q psy12724        115 ---TESTDGKYLVLPSG------ELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       115 ---~~~~~~r~~~~~~g------~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                         .+...+|+.+..+|      .|.|.+++.+|+ |.|+|.|.|..   +..+.|.+
T Consensus       163 ~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~~g~~~~~~~l~V  219 (585)
T 2ocw_A          163 GYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDA-GQYLCQAGDDSNSNKKNADLQV  219 (585)
T ss_pred             cccCccccCcEEEEeccCCCcEEEEEEccCChhHC-eEEEEEeccCCccccceEEEEE
Confidence               00013566666555      699999999999 99999999976   23444444

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.67  E-value=2.5e-15  Score=115.21  Aligned_cols=127  Identities=17%  Similarity=0.182  Sum_probs=89.4

Q ss_pred             EeeeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec---CCceE------EEeeeEEEecC----
Q psy12724          8 VISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID---NQDFV------VSQSYTVNIMD----   74 (167)
Q Consensus         8 v~~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~---~~~~v------~~g~y~c~~~~----   74 (167)
                      |..+.+...+.+..+.+|+++.|.|.+.+...  .+.+.|++++. .+...   ....+      ..|.|+|.+.+    
T Consensus        80 v~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p--~~~v~W~~~g~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~  156 (262)
T 3rjd_A           80 IHRGWLLLQVSSRVFTEGEPLALRCHAWKDKL--VYNVLYYRNGK-AFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRY  156 (262)
T ss_dssp             EECSSEEEEESCSEEETTSCEEEEEEEGGGCC--CEEEEEEETTE-EEEEEEECCCEEESSCCGGGCEEEEEEEESSSEE
T ss_pred             EeccceEecCCCeEEecCCeEEEEEEccCCCC--CceEEEEECCc-cccccCCCCeEEEEECChhhCEEEEEEEeCCCCc
Confidence            33445666777788999999999999943332  25899999854 34321   11111      27999998732    


Q ss_pred             -----------------------eEEEeCCcEEEEeeeCCccCCcc-e----eEEEEeCCCeeeEEeeeecCCceEEEcc
Q psy12724         75 -----------------------EHVLKGNSAVLKCHIPSFVADYV-A----VESWISDQGEELFVDMTESTDGKYLVLP  126 (167)
Q Consensus        75 -----------------------~~v~~G~~a~l~C~~~~~~~~p~-p----~i~W~k~~~~~l~~~~~~~~~~r~~~~~  126 (167)
                                             ..+.+|+++.|.|.+.+.   |. |    .++|++++ ..+...           ..
T Consensus       157 ~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~---p~~p~~~~~~~w~~~~-~~~~~~-----------~~  221 (262)
T 3rjd_A          157 TSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLL---LQRPGLQLYFSFYMGS-KTLRGR-----------NT  221 (262)
T ss_dssp             EEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCCC---CC-----EEEEEEETT-EEEEEE-----------ES
T ss_pred             cccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEcccC---CCCCCccEEEEEEeCC-cEeccc-----------CC
Confidence                                   125689999999999854   43 3    36899987 444311           23


Q ss_pred             CCeEEEeecCcCCCCcceEEEeeecCc
Q psy12724        127 SGELHIRDVGPEDGYKSYQCRTKHRLT  153 (167)
Q Consensus       127 ~g~L~I~~v~~~D~~G~Y~C~a~n~~~  153 (167)
                      ++.|.|.+++.+|+ |.|+|.|.|...
T Consensus       222 ~~~L~i~~v~~~d~-G~Y~C~a~n~~G  247 (262)
T 3rjd_A          222 SSEYQILTARREDS-GLYWCEAATEDG  247 (262)
T ss_dssp             CCEEEESSCCGGGC-EEEEEEEEETTS
T ss_pred             CceEEEEEechhhC-eEEEEEEEcccC
Confidence            56899999999999 999999999873

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.66  E-value=9.8e-16  Score=124.39  Aligned_cols=123  Identities=22%  Similarity=0.369  Sum_probs=90.6

Q ss_pred             EEeEEEEEeCCcEEEEeec-CCCCCCcceeeEEeeCCCceeeecC--------CceE------E-EeeeEEEecC-----
Q psy12724         16 QVYDVFVIKGNAAVFKCNL-PSFVSDHLDVVSWADTDGGQYQIDN--------QDFV------V-SQSYTVNIMD-----   74 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a-~~~~~~~~~~i~W~k~~~~~~~~~~--------~~~v------~-~g~y~c~~~~-----   74 (167)
                      .+.+..+.+|+++.|.|.+ .+.+.   +.+.|++++...+..+.        ...+      . .|.|+|.+.+     
T Consensus       122 ~~~~~~v~~G~~v~l~C~~~~~~p~---~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~  198 (404)
T 3p3y_A          122 NLDPVVVQEGAPLTLQCNPPPGLPS---PVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHT  198 (404)
T ss_dssp             CCCCEEEETTSCEEECCCCCCCSSC---CEEEEECTTSCBCCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCC
T ss_pred             CCCCeEEccCCcEEEEeCCCCCCCC---CeEEEeCCCccccCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccc
Confidence            3455789999999999999 55554   48999998754433211        1111      1 4899998732     


Q ss_pred             ---------------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCce
Q psy12724         75 ---------------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGK  121 (167)
Q Consensus        75 ---------------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r  121 (167)
                                                       ..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.      ...+
T Consensus       199 ~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g---~p~~~v~W~~~~-~~~~------~~~~  268 (404)
T 3p3y_A          199 IQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASG---VPTPDIAWYKKG-GDLP------SDKA  268 (404)
T ss_dssp             EEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCC---SSCCEEEEEETT-BCCC------TTTE
T ss_pred             eeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECC---CCCCcEEEEECC-EECC------CCcc
Confidence                                             23567999999999984   588999999998 4542      2333


Q ss_pred             EEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        122 YLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       122 ~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .....++.|.|.+++.+|+ |.|+|.|.|..
T Consensus       269 ~~~~~~~~L~i~~~~~~d~-G~Y~C~a~n~~  298 (404)
T 3p3y_A          269 KFENFNKALRITNVSEEDS-GEYFCLASNKM  298 (404)
T ss_dssp             EEEGGGTEEEESSCCGGGC-EEEEEEEECSS
T ss_pred             cccccCceEEEccCCHhHC-EEEEEEEEeCC
Confidence            4444578999999999999 99999999986

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.66  E-value=2.5e-16  Score=108.34  Aligned_cols=84  Identities=19%  Similarity=0.320  Sum_probs=66.4

Q ss_pred             eeeEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCc
Q psy12724         66 QSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYK  142 (167)
Q Consensus        66 g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G  142 (167)
                      +.|.-.+.+..+.+|+++.|.|.+.   |+|.|.++|+||+ ..|.      .+.|+.+..++   .|.|.+++.+|+ |
T Consensus        14 P~f~~~p~~~~v~~G~~~~l~C~~~---G~P~p~v~W~k~g-~~l~------~~~~~~~~~~~~~~~L~I~~v~~~D~-G   82 (107)
T 3knb_B           14 PCFLRFPRPVRVVSGAEAELKCVVL---GEPPPVVVWEKGG-QQLA------ASERLSFPADGAEHGLLLTAALPTDA-G   82 (107)
T ss_dssp             EEEEECCCCEEEETTSCEEEEEEEE---EESCCEEEEEETT-EECC------CCSSEECCEETTEEEEEESSCCGGGC-E
T ss_pred             CEEEeCCCcEEEeCCCcEEEEEEEE---EecCCEEEEEECc-cccc------ceeeEEEeecCceEEEEEecCChhhC-E
Confidence            3455566788999999999999997   4599999999997 5653      35677766544   699999999999 9


Q ss_pred             ceEEEeeecC---cceEEEee
Q psy12724        143 SYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       143 ~Y~C~a~n~~---~~~~~l~~  160 (167)
                      .|+|.|.|..   +..+.|.+
T Consensus        83 ~Y~C~a~N~~G~~~~~~~l~V  103 (107)
T 3knb_B           83 VYVCRARNAAGEAYAAAAVTV  103 (107)
T ss_dssp             EEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEECCCEEEEEEEEEE
Confidence            9999999987   33444444

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.66  E-value=4e-16  Score=130.38  Aligned_cols=132  Identities=12%  Similarity=0.158  Sum_probs=87.3

Q ss_pred             EEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee-----cC---CceE----EEeeeEEEecC--------------
Q psy12724         21 FVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI-----DN---QDFV----VSQSYTVNIMD--------------   74 (167)
Q Consensus        21 ~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~-----~~---~~~v----~~g~y~c~~~~--------------   74 (167)
                      .+..|+.+.|.|.|.|.|.   |.|+|+|+++.....     .+   ...+    ..|.|+|.+.|              
T Consensus       150 ~~~~~~~~~L~C~a~G~P~---P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V  226 (423)
T 3qs7_E          150 FRKMENQDALVCISESVPE---PIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDL  226 (423)
T ss_dssp             EEECSSSSCEEEEEEESSC---CEEEEEEC-------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEES
T ss_pred             EeccCCceEEEEEEeeecC---CeEEEEECCCCCccccccccccccccceEEecccCeEEEEEEEcCCCCcceeeEEEEE
Confidence            4567999999999998876   489999986532110     00   0111    37889998753              


Q ss_pred             ----------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee----eecCCceEEEccCCeEEEeecCcCCC
Q psy12724         75 ----------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM----TESTDGKYLVLPSGELHIRDVGPEDG  140 (167)
Q Consensus        75 ----------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~----~~~~~~r~~~~~~g~L~I~~v~~~D~  140 (167)
                                ..+.+|+++.|.|.+.+  .+|.|.++|+|++. .+....    ....+.+. ...++.|.|.+++.+|+
T Consensus       227 ~~~p~~~~~~~~v~~G~~v~L~C~~~g--~~p~p~i~W~k~g~-~l~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~  302 (423)
T 3qs7_E          227 NQTPQTTLPQLFLKVGEPLWIRCKAVH--VNHGFGLTWELENK-ALEEGNYFEMSTYSTNRT-MIRILFAFVSSVARNDT  302 (423)
T ss_dssp             SSCCCSSTTEEEEETTSCEEEEEEEEE--SSSCCCEEEEESSS-BCCGGGEEEEEEEETTTE-EEEEEEEEESSCCTTTC
T ss_pred             ecCCccCCCceEEeCCCeEEEEEEEEc--CCCCcEEEEEECCE-EccccceeecccccCCce-eEEEEEEEEeecCHHHC
Confidence                      34578999999999974  25778999999984 442100    00001111 22346799999999999


Q ss_pred             CcceEEEeeecCcceEEEee
Q psy12724        141 YKSYQCRTKHRLTGETRLSA  160 (167)
Q Consensus       141 ~G~Y~C~a~n~~~~~~~l~~  160 (167)
                       |.|+|.|.|..+..+.|.+
T Consensus       303 -G~Y~C~A~N~~~~~~~L~V  321 (423)
T 3qs7_E          303 -GYYTCSSSKHPSQSALVTI  321 (423)
T ss_dssp             -EEEEEEETTEEEEEEEEEE
T ss_pred             -EEEEEEEecCCCceEEEEE
Confidence             9999999998444555555

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.66  E-value=2.7e-15  Score=115.51  Aligned_cols=146  Identities=14%  Similarity=0.120  Sum_probs=96.4

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC-c---eeee--------cCCc----------eE------
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG-G---QYQI--------DNQD----------FV------   63 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~-~---~~~~--------~~~~----------~v------   63 (167)
                      .+...|.++.+.+|+++.|.|.+.+.+.   +.+.|+|++. .   .+..        ...|          .+      
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   79 (242)
T 2znx_A            3 VLTQSPATLSVTPGNSVSLSCRASQSIG---NNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVE   79 (242)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC
T ss_pred             cEEEcCCeEEEcCCCcEEEEEEeCCCCC---ceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCC
Confidence            3567788899999999999999988764   4799998531 1   1110        0011          11      


Q ss_pred             --EEeeeEEEecC---------------------------------------eEEEeCCcEEEEeeeCCccCCcceeEEE
Q psy12724         64 --VSQSYTVNIMD---------------------------------------EHVLKGNSAVLKCHIPSFVADYVAVESW  102 (167)
Q Consensus        64 --~~g~y~c~~~~---------------------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W  102 (167)
                        .+|.|.|.+.+                                       ..+.+|+++.|.|.+.+. ..+.|.+.|
T Consensus        80 ~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~-~~~~~~v~W  158 (242)
T 2znx_A           80 TEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGD-SITSDYXSX  158 (242)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESS-CGGGSCEEE
T ss_pred             hHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEcc-ccCCcceee
Confidence              27999997632                                       124569999999999743 113578999


Q ss_pred             EeCC-CeeeE--Eeee--------ecCCceEEEccC-----CeEEEeecCcCCCCcceEEEeeec--CcceEEEeeeC
Q psy12724        103 ISDQ-GEELF--VDMT--------ESTDGKYLVLPS-----GELHIRDVGPEDGYKSYQCRTKHR--LTGETRLSATK  162 (167)
Q Consensus       103 ~k~~-~~~l~--~~~~--------~~~~~r~~~~~~-----g~L~I~~v~~~D~~G~Y~C~a~n~--~~~~~~l~~~~  162 (167)
                      +|++ +..+.  -...        +...+|+.+..+     +.|.|.+++.+|+ |.|.|.|.|.  +..-++|.+.+
T Consensus       159 ~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~~~~~fG~gt~l~v~~  235 (242)
T 2znx_A          159 IRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDT-ATYYCANXDGDYXGQGTLVTVSA  235 (242)
T ss_dssp             EEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGC-EEEEEEETTSSCBCCCEEEEECC
T ss_pred             EeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcC-EEEEEeccCCcccCCCeEEEEEe
Confidence            9853 12221  0000        012467766532     3799999999999 9999999995  35666776654

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.66  E-value=1.1e-15  Score=118.99  Aligned_cols=134  Identities=11%  Similarity=0.046  Sum_probs=91.3

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee-c-----CCc-eE--------EEeeeEEEecC-
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI-D-----NQD-FV--------VSQSYTVNIMD-   74 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~-~-----~~~-~v--------~~g~y~c~~~~-   74 (167)
                      +.+...|.. .|.+|+++.|.|.+.+.+    +.+.|+|++...... .     ... .+        .+|.|+|.+.+ 
T Consensus         8 P~i~~~P~~-~v~~G~~VtL~C~~~~~~----~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   82 (242)
T 1p6f_A            8 PFIWAEPHF-MVPKEKQVTICCQGNYGA----VEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVG   82 (242)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCTTC----CEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CEEEeeCCC-ccCCCCcEEEEEeeCCCC----cEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecC
Confidence            346677776 899999999999997532    368999986432211 0     011 11        27999997621 


Q ss_pred             ----------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc
Q psy12724         75 ----------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP  126 (167)
Q Consensus        75 ----------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~  126 (167)
                                                  ..+.+|++++|.|.+.+    +.+.+.|+||+ ..+..       .+.....
T Consensus        83 ~~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~----~~~~~~w~k~g-~~~~~-------~~~~~~~  150 (242)
T 1p6f_A           83 ELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDT----ATSMFLLLKEG-RSSHV-------QRGYGKV  150 (242)
T ss_dssp             TEECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEECTT----SCSEEEEEECS-SSCEE-------EEEECSS
T ss_pred             CccccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEecCC----CCCEEEEEECC-CccCc-------cccCCCc
Confidence                                        23567999999999863    34588999997 34421       1112234


Q ss_pred             CCeEEEeecCcCCCCcceEEEeeecC------cceEEEeeeC
Q psy12724        127 SGELHIRDVGPEDGYKSYQCRTKHRL------TGETRLSATK  162 (167)
Q Consensus       127 ~g~L~I~~v~~~D~~G~Y~C~a~n~~------~~~~~l~~~~  162 (167)
                      ++.|.|.+++.+|+ |.|+|.|.|..      +..+.|.+.+
T Consensus       151 ~~~l~I~~v~~~d~-G~Y~C~a~n~~~~~s~~S~~~~l~V~~  191 (242)
T 1p6f_A          151 QAEFPLGPVTTAHR-GTYRCFGSYNNHAWSFPSEPVKLLVTG  191 (242)
T ss_dssp             EEEEEEEECCGGGC-EEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred             eEEEEeCCCccccC-EEEEEEEECCCCcccCCCCCEEEEEec
Confidence            56899999999999 99999999852      4445555543

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.66  E-value=1.4e-16  Score=124.66  Aligned_cols=127  Identities=15%  Similarity=0.219  Sum_probs=88.8

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecC------CceE--------EEe-eeEEEecC-----
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN------QDFV--------VSQ-SYTVNIMD-----   74 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~------~~~v--------~~g-~y~c~~~~-----   74 (167)
                      ..+.+..+.+|+++.|.|.+.+ |.  .+.+.|++.++..+..+.      ...+        ..| .|+|.+.+     
T Consensus        96 ~~~~~~~~~~g~~v~l~C~~~~-p~--~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~  172 (290)
T 2o26_X           96 LVGLPLFGKEDSDALVRCPLTD-PQ--VSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWL  172 (290)
T ss_dssp             CCCCCEEEETTSCEEECCCBSC-CS--CEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEE
T ss_pred             ccccceEEecCCeEEEeCcCCC-CC--CceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceE
Confidence            5566788999999999999985 43  368999654555553211      1111        168 99998742     


Q ss_pred             -------------------------eEEEeCCcEEEEeeeCCccCCccee-EEEEeCCCee---eEEeeeecCCceE---
Q psy12724         75 -------------------------EHVLKGNSAVLKCHIPSFVADYVAV-ESWISDQGEE---LFVDMTESTDGKY---  122 (167)
Q Consensus        75 -------------------------~~v~~G~~a~l~C~~~~~~~~p~p~-i~W~k~~~~~---l~~~~~~~~~~r~---  122 (167)
                                               ..+.+|+++.|.|.+.   +.|.|. ++|+|++...   +...    ...++   
T Consensus       173 ~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~---g~p~p~~i~W~~~~~~~~~~~~~~----~~~~~~~~  245 (290)
T 2o26_X          173 HSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIK---DVSTSVNSMWLKMNPQPQHIAQVK----HNSWHRGD  245 (290)
T ss_dssp             ECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEE---ESSTTCEEEEEEESSSEEECCCEE----CCEEEEET
T ss_pred             EeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEe---cCCcceeEEEecCCCCCccceeec----ccccccCc
Confidence                                     1235799999999998   458886 9999998431   1111    11111   


Q ss_pred             -EEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        123 -LVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       123 -~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                       .....+.|.|.+++.+|+ |.|+|.|.|..
T Consensus       246 ~~~~~~~~L~I~~v~~~d~-G~Y~C~a~N~~  275 (290)
T 2o26_X          246 FNYERQETLTISSARVDDS-GVFMCYANNTF  275 (290)
T ss_dssp             TEEEEEEEEEESSCCSSSC-EEEEEEEECSS
T ss_pred             eeeEEEEEEEEcCCCcccC-eEEEEEEeCCC
Confidence             223456899999999999 99999999987

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.66  E-value=1e-15  Score=118.35  Aligned_cols=145  Identities=17%  Similarity=0.249  Sum_probs=95.0

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC-CCcee-------------------------eecCCc---eE
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT-DGGQY-------------------------QIDNQD---FV   63 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~-~~~~~-------------------------~~~~~~---~v   63 (167)
                      +..++.++.|.+|+++.|.|.+.+.+.+ .+.+.|+|. .+..+                         ..+...   .+
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   82 (253)
T 3uzq_A            4 LLEQSGAELVKPGASVRLSCTASGFNIK-DTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYL   82 (253)
T ss_dssp             CEEECCCEEECTTCCEEEEEEECSSCGG-GSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEE
T ss_pred             eEecCCCeeecCCCcEEEEEEeeCCccc-CceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEE
Confidence            4567788999999999999999885432 257999983 22111                         000100   01


Q ss_pred             --------EEeeeEEEecC-----------------------------------------eEEEeCCcEEEEeeeCCccC
Q psy12724         64 --------VSQSYTVNIMD-----------------------------------------EHVLKGNSAVLKCHIPSFVA   94 (167)
Q Consensus        64 --------~~g~y~c~~~~-----------------------------------------~~v~~G~~a~l~C~~~~~~~   94 (167)
                              .+|.|.|.+.+                                         ..+.+|+++.|.|.+.+   
T Consensus        83 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~---  159 (253)
T 3uzq_A           83 HLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASE---  159 (253)
T ss_dssp             EECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESS---
T ss_pred             EeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecC---
Confidence                    17999998642                                         23457999999999984   


Q ss_pred             Ccce----eEEEEeCCC-eeeE--Eee----eecCCceEEEccC---CeEEEeecCcCCCCcceEEEeeecC----cceE
Q psy12724         95 DYVA----VESWISDQG-EELF--VDM----TESTDGKYLVLPS---GELHIRDVGPEDGYKSYQCRTKHRL----TGET  156 (167)
Q Consensus        95 ~p~p----~i~W~k~~~-~~l~--~~~----~~~~~~r~~~~~~---g~L~I~~v~~~D~~G~Y~C~a~n~~----~~~~  156 (167)
                      .|.|    .+.|+|++. ..+.  -..    .....+|+....+   ..|.|.+++.+|+ |.|.|.|.|..    +..+
T Consensus       160 ~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~n~~~~~fg~gt  238 (253)
T 3uzq_A          160 NVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDV-ATYFCQRSNEVPWTFGGGT  238 (253)
T ss_dssp             CCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSSSSCCBCCCE
T ss_pred             ccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHC-EEEEEEEccCCCcEECCCE
Confidence            4665    899998521 1111  000    0011356655432   2599999999999 99999999954    5677


Q ss_pred             EEeeeC
Q psy12724        157 RLSATK  162 (167)
Q Consensus       157 ~l~~~~  162 (167)
                      +|.+.+
T Consensus       239 ~l~v~~  244 (253)
T 3uzq_A          239 KLEIKR  244 (253)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            777754

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.66  E-value=1.1e-15  Score=115.35  Aligned_cols=133  Identities=14%  Similarity=0.162  Sum_probs=86.3

Q ss_pred             eeeEEeEEEEE-eCCcEEEEeecCCCCCCcceeeEEeeCCCcee----eecCCc-eE--------EEeeeEEEecC----
Q psy12724         13 YEAQVYDVFVI-KGNAAVFKCNLPSFVSDHLDVVSWADTDGGQY----QIDNQD-FV--------VSQSYTVNIMD----   74 (167)
Q Consensus        13 ~~~~~~~~~v~-~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~----~~~~~~-~v--------~~g~y~c~~~~----   74 (167)
                      +++.|.+..+. +|+++.|.|.+.+.|.   |.+.|.++.+..+    ...+.. .+        ..|.|.|.+.+    
T Consensus         3 v~i~p~~~~~~~~G~~v~L~C~~~g~P~---p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~   79 (202)
T 1vca_A            3 IETTPESRYLAQIGDSVSLTCSTTGCES---PFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK   79 (202)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSS---CEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEE
T ss_pred             EEECCCCcEEEcCCCcEEEEEeecCCCC---CeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCce
Confidence            45667776665 9999999999998775   4699998532211    111111 11        27999998742    


Q ss_pred             ---------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCC---ceEEEccCCeE
Q psy12724         75 ---------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTD---GKYLVLPSGEL  130 (167)
Q Consensus        75 ---------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~---~r~~~~~~g~L  130 (167)
                                           ..+.+|+++.|.|.+.+....+.+.++|+||+ ..+.........   ..+.  ....|
T Consensus        80 ~~~~~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~-~~l~~~~~~~~~~~~~~~~--~~~~l  156 (202)
T 1vca_A           80 LEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGD-HLMKSQEFLEDADRKSLET--KSLEV  156 (202)
T ss_dssp             EEEEEEEEEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETT-EEEEEEECCSCCSSCCCEE--EEEEE
T ss_pred             EeeEEEEEEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCC-eECcccccccccCcCcceE--EEEEE
Confidence                                 12568999999999975311113578999997 565432100000   0011  12357


Q ss_pred             EEeecCcCCCCcceEEEeeecC
Q psy12724        131 HIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       131 ~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .|......|. |.|+|.|.|.+
T Consensus       157 ~i~~~~~d~~-g~ytC~A~n~~  177 (202)
T 1vca_A          157 TFTPVIEDIG-KVLVCRAKLHI  177 (202)
T ss_dssp             EECCCGGGTT-CEEEEEEEECS
T ss_pred             EEEeeeccCC-CeEEEEEEccc
Confidence            8999998898 99999999987

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.66  E-value=1.5e-16  Score=119.34  Aligned_cols=131  Identities=18%  Similarity=0.300  Sum_probs=87.5

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Ccee---e------ecC--Cc----------eE-------
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQY---Q------IDN--QD----------FV-------   63 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~---~------~~~--~~----------~v-------   63 (167)
                      +...|.++.+.+|+++.|.|.+.+.+.+   .+.|+|++ +..+   .      ...  .+          .+       
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~---~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   80 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQSIGN---NLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVET   80 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT---CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             EEeCCccEEEeCCCcEEEEEECCCCCCC---CEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCCh
Confidence            3455788999999999999999987643   69999853 2111   0      000  11          11       


Q ss_pred             -EEeeeEEEecCe-----------EE------------------EeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEE
Q psy12724         64 -VSQSYTVNIMDE-----------HV------------------LKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFV  112 (167)
Q Consensus        64 -~~g~y~c~~~~~-----------~v------------------~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~  112 (167)
                       .+|.|+|.+.+.           .|                  ..|+++.|.|.+.+.  .|.| .++|+||+ ..+..
T Consensus        81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~--~p~~~~v~W~k~g-~~~~~  157 (213)
T 3d9a_L           81 EDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNF--YPKDINVKWKIDG-SERQN  157 (213)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEE--BSSCCEEEEEETT-EEECT
T ss_pred             hhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeee--cCCceEEEEEcCC-CcCcc
Confidence             279999987431           11                  248899999999752  3555 79999997 55531


Q ss_pred             e-e-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        113 D-M-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       113 ~-~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      . .     ....+++|..  .+.|.|.+++.+|+ |.|+|.|.|..
T Consensus       158 ~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~-G~Y~C~a~n~~  200 (213)
T 3d9a_L          158 GVLNSWTDQDSKDSTYSM--SSTLTLTKDEYERH-NSYTCEATHKT  200 (213)
T ss_dssp             TEEEEECCCCTTTCCEEE--EEEEEEEHHHHHHC-CEEEEEEECTT
T ss_pred             eeeecCCCccCCCCCEEE--EEEEEEeccccCCC-CEEEEEEEEcc
Confidence            1 0     0011222321  24799999999999 99999999986

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.66  E-value=3.2e-16  Score=123.57  Aligned_cols=130  Identities=15%  Similarity=0.281  Sum_probs=90.3

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec-----------CCceE------EEeeeEEEec
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID-----------NQDFV------VSQSYTVNIM   73 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~-----------~~~~v------~~g~y~c~~~   73 (167)
                      +.+...+.+..+.+|+++.|.|.+.+.|.   +.+.|+|++. .+...           +...+      ..|.|+|.+.
T Consensus       109 p~i~~~~~~~~v~~g~~v~l~C~~~g~p~---~~v~W~k~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  184 (304)
T 2yd9_A          109 PNIDMGPQLKVVERTRTATMLCAASGNPD---PEITWFKDFL-PVDPSASNGRIKQLRSGALQIESSEETDQGKYECVAT  184 (304)
T ss_dssp             CEEEECCCCEEEETTSCEEECCEEECSSC---CEEEEEETTE-ECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEE
T ss_pred             CeeecCCccEEEeCCCeEEEEEECccCCC---CeEEEEECCE-ECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEE
Confidence            34666777888999999999999988775   4799999854 33221           11111      2799999863


Q ss_pred             C-----------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE
Q psy12724         74 D-----------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV  124 (167)
Q Consensus        74 ~-----------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~  124 (167)
                      +                             ..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+..      ..++  
T Consensus       185 n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g---~p~p~v~W~~~~-~~l~~------~~~~--  252 (304)
T 2yd9_A          185 NSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVG---SPMPYVKWMQGA-EDLTP------EDDM--  252 (304)
T ss_dssp             ETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEE---ESCCEEEEEETT-EECSC------SSSC--
T ss_pred             eCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEee---eCCCEEEEEECC-EECCC------cccc--
Confidence            2                             12357999999999974   589999999997 45531      2222  


Q ss_pred             ccCCe--EEEeecCcCCCCcceEEEeeecC---cceEEEee
Q psy12724        125 LPSGE--LHIRDVGPEDGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       125 ~~~g~--L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                       .++.  |.|.++  +|+ |.|+|.|.|..   +..+.|.+
T Consensus       253 -~~~~~~L~i~~~--~d~-G~Y~C~a~N~~G~~~~~~~l~V  289 (304)
T 2yd9_A          253 -PVGRNVLELTDV--KDS-ANYTCVAMSSLGVIEAVAQITV  289 (304)
T ss_dssp             -CBSEEEEEECSC--CSC-EEEEEEEEETTEEEEEEEEEC-
T ss_pred             -cCCcEEEEEccc--ccC-EEEEEEEEeCCCcEEEEEEEEE
Confidence             2344  666655  798 99999999987   33445554

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.66  E-value=3e-15  Score=127.78  Aligned_cols=145  Identities=13%  Similarity=0.114  Sum_probs=96.7

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceee----EEee--CCC--ceeee-------------------cCCceE-
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVV----SWAD--TDG--GQYQI-------------------DNQDFV-   63 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i----~W~k--~~~--~~~~~-------------------~~~~~v-   63 (167)
                      .+...+.+..+.+|+++.|.|.+.+.+.+   .+    +|.|  ++.  ..+..                   ++...+ 
T Consensus       333 ~~~~~~~~~~~~~G~~v~l~C~~~~~p~p---~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~  409 (585)
T 2ocw_A          333 TIPRSPTVVKGVAGSSVAVLCPYNRKESK---SIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVI  409 (585)
T ss_pred             ccccCCcceEEEeCCcEEEEEecCCCCCc---cEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEE
Confidence            35566778889999999999999988764   44    7999  543  12110                   011001 


Q ss_pred             -------EEeeeEEEec------------------------CeEEEeCCcEEEEeeeCCc-cCCcceeEEEEeCCCeeeE
Q psy12724         64 -------VSQSYTVNIM------------------------DEHVLKGNSAVLKCHIPSF-VADYVAVESWISDQGEELF  111 (167)
Q Consensus        64 -------~~g~y~c~~~------------------------~~~v~~G~~a~l~C~~~~~-~~~p~p~i~W~k~~~~~l~  111 (167)
                             ..|.|+|.+.                        +..+.+|+++.|.|.+.+. .+.|.|.++|+||+ ..+.
T Consensus       410 I~~v~~~D~G~Y~C~an~~g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g-~~~~  488 (585)
T 2ocw_A          410 LNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTG-CQAL  488 (585)
T ss_pred             ECCCChhhCEEEEEcccCCCccceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecC-ceee
Confidence                   2799999862                        1345789999999999622 25689999999998 4554


Q ss_pred             EeeeecCCceEEEcc-C---CeEEEeecCcCCCCcceEEEeeecCc----ceEEEeee
Q psy12724        112 VDMTESTDGKYLVLP-S---GELHIRDVGPEDGYKSYQCRTKHRLT----GETRLSAT  161 (167)
Q Consensus       112 ~~~~~~~~~r~~~~~-~---g~L~I~~v~~~D~~G~Y~C~a~n~~~----~~~~l~~~  161 (167)
                      +........++.... +   +.|.|.+++.+|+ |.|+|.|.|...    ..+.|.+.
T Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~a~N~~G~~~~~~~~l~V~  545 (585)
T 2ocw_A          489 PSQDEGPSKAFVNCDENSRLVSLTLNLVTRADE-GWYWCGVKQGHFYGETAAVYVAVE  545 (585)
T ss_pred             eccCCCCCcceEEecCcccEEEEEECCCCcccC-eEEEEEeEeCCCccEEEEEEEEEE
Confidence            321000111233332 2   4899999999999 999999999872    23455553

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.66  E-value=2.4e-16  Score=122.89  Aligned_cols=137  Identities=18%  Similarity=0.274  Sum_probs=98.4

Q ss_pred             eeeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee--cCCc-eE--------EEeeeEEEecC---
Q psy12724          9 ISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI--DNQD-FV--------VSQSYTVNIMD---   74 (167)
Q Consensus         9 ~~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~--~~~~-~v--------~~g~y~c~~~~---   74 (167)
                      ..+.+...+.+..+.+|+++.|.|.+.+.       +.|.++.......  +... .+        ..|.|+|.+.+   
T Consensus         3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~-------v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~   75 (292)
T 4dkd_C            3 SIPVIEPSVPELVVKPGATVTLRCVGNGS-------VEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPL   75 (292)
T ss_dssp             -CCEEESCCSSCEECTTCCEEEEEECSSC-------CCBCCCCCSSCEECCBTTEEEEEESSCCGGGCSCEEECCCC---
T ss_pred             CCceecCCCCeEEEcCCCcEEEEEcCCCc-------eEEccCCCCceEEeccCceEEEEEcccccccCEEEEEEEccCCC
Confidence            45667778888999999999999999762       7899764422211  1111 11        27999998643   


Q ss_pred             -----------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEE
Q psy12724         75 -----------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELH  131 (167)
Q Consensus        75 -----------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~  131 (167)
                                             ..+.+|+++.|.|.+.+  ..+.|.++|+++++..+.      ...++....++.|.
T Consensus        76 ~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~--~~~~~~v~W~~~~~~~~~------~~~~~~~~~~~~L~  147 (292)
T 4dkd_C           76 GGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD--PVLEAGVSLVRVRGRPLM------RHTNYSFSPWHGFT  147 (292)
T ss_dssp             -CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS--GGGGSSEEEEEGGGCCCC------SSCCEECCSSSCCE
T ss_pred             CcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC--CCcceeEEEEecCCCccc------cCCcccccCCceEE
Confidence                                   34578999999999974  223378999998644442      35677777778899


Q ss_pred             EeecCcCCCCcceEEEeeecC----cceEEEeee
Q psy12724        132 IRDVGPEDGYKSYQCRTKHRL----TGETRLSAT  161 (167)
Q Consensus       132 I~~v~~~D~~G~Y~C~a~n~~----~~~~~l~~~  161 (167)
                      |.+++.+|+ |.|+|.|.|..    +..+.|.+.
T Consensus       148 i~~~~~~d~-G~Y~C~a~n~~~~~~s~~~~l~V~  180 (292)
T 4dkd_C          148 IHRAKFIQS-QDYQCSALMGGRKVMSISIRLKVQ  180 (292)
T ss_dssp             ETTCCGGGC-SEEEEEECSTTSCEECCCEEEEEE
T ss_pred             ECCCCHHHC-eEEEEEEEeCCCceeEEEEEEEEe
Confidence            999999999 99999999865    334555554

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.66  E-value=1e-15  Score=114.61  Aligned_cols=123  Identities=12%  Similarity=0.096  Sum_probs=82.7

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee-------cC-C-c-eE-------EEeeeEEEecC
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI-------DN-Q-D-FV-------VSQSYTVNIMD   74 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~-------~~-~-~-~v-------~~g~y~c~~~~   74 (167)
                      .+...|. ..|.+|+++.|.|.+.+ +   .+.+.|+|++......       .. . . ..       .+|.|+|.+.+
T Consensus        10 ~i~~~p~-~~v~~G~~v~L~C~~~~-~---~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~   84 (201)
T 1nkr_A           10 SLLAHPG-PLVKSEETVILQCWSDV-M---FEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSV   84 (201)
T ss_dssp             EEEEESC-SEEETTCCEEEEEEESS-C---CSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred             eEEEEcC-CccCCCCcEEEEEeccC-C---CCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEec
Confidence            3555665 77899999999999974 2   2479999986532210       00 0 1 11       26999998621


Q ss_pred             --------------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceE
Q psy12724         75 --------------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY  122 (167)
Q Consensus        75 --------------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~  122 (167)
                                                      ..+.+|++++|.|.+.+    |.+.+.|+||+. .+...     ..+.
T Consensus        85 ~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~----~~~~~~w~k~g~-~~~~~-----~~~~  154 (201)
T 1nkr_A           85 THSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRS----SYDMYHLSREGE-AHERR-----LPAG  154 (201)
T ss_dssp             TTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEESS----CCSEEEEEETTC-SSCEE-----EECE
T ss_pred             CCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEeCCC----CCceEEEEECCc-ccCcc-----cccc
Confidence                                            12457999999999973    557889999983 44321     1111


Q ss_pred             EEc---cCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        123 LVL---PSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       123 ~~~---~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ...   .++.|.|.+++  |+ |.|+|.|.+..
T Consensus       155 ~~~~~~~~~~L~i~~v~--d~-G~Y~C~a~~~~  184 (201)
T 1nkr_A          155 PKVNGTFQADFPLGPAT--HG-GTYRCFGSFHD  184 (201)
T ss_dssp             EEETTEEEEEEEEEECC--SC-EEEEEEEEETT
T ss_pred             cccCCceEEEEEeCCcC--CC-eeEEEEEEcCC
Confidence            111   14689999999  98 99999999753

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.66  E-value=2.8e-16  Score=124.19  Aligned_cols=124  Identities=15%  Similarity=0.238  Sum_probs=89.6

Q ss_pred             EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceee-e-cCCc------eE--------EEeeeEEEecC--------
Q psy12724         19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ-I-DNQD------FV--------VSQSYTVNIMD--------   74 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~-~-~~~~------~v--------~~g~y~c~~~~--------   74 (167)
                      ...|.+|+++.|.|.+.+.+.+  +.+.|+|++..... . ...+      .+        ..|.|+|.+.+        
T Consensus        14 ~~~v~~G~~v~L~C~~~~~~~~--~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   91 (315)
T 1itb_B           14 ILVSSANEIDVRPCPLNPNEHK--GTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK   91 (315)
T ss_dssp             CCEEETTSCCCCBCCCCSCCCS--SCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCCCEE
T ss_pred             EEEEcCCCcEEEEeeccCcCCC--ceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEEEEE
Confidence            5778999999999999887733  47999999753211 1 1111      11        27999998632        


Q ss_pred             ---------------------eEEEeCCcEEEEeeeCCc---cCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeE
Q psy12724         75 ---------------------EHVLKGNSAVLKCHIPSF---VADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGEL  130 (167)
Q Consensus        75 ---------------------~~v~~G~~a~l~C~~~~~---~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L  130 (167)
                                           ..+..|+++.|.|.+...   .+.|.|.++|+|++ ..+..     ...++ ...++.|
T Consensus        92 ~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~-~~l~~-----~~~~~-~~~~~~L  164 (315)
T 1itb_B           92 ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDC-KPLLL-----DNIHF-SGVKDRL  164 (315)
T ss_dssp             CCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETT-EECCC-----CSSSE-EEETTEE
T ss_pred             EEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECC-EECCC-----ccceE-eecCceE
Confidence                                 245679999999998200   15689999999997 55532     23344 3457899


Q ss_pred             EEeecCcCCCCcceEEEee-ecC
Q psy12724        131 HIRDVGPEDGYKSYQCRTK-HRL  152 (167)
Q Consensus       131 ~I~~v~~~D~~G~Y~C~a~-n~~  152 (167)
                      .|.+++.+|+ |.|+|.|. |..
T Consensus       165 ~i~~v~~~d~-G~Y~C~a~~n~~  186 (315)
T 1itb_B          165 IVMNVAEKHR-GNYTCHASYTYL  186 (315)
T ss_dssp             EESSCCGGGC-EEEEEEEEEEET
T ss_pred             EEEeceehhC-cEEEEEEEcCCC
Confidence            9999999999 99999999 665

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.65  E-value=2.1e-15  Score=122.00  Aligned_cols=113  Identities=18%  Similarity=0.263  Sum_probs=86.4

Q ss_pred             EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee-------------------------cCCceE--------EE
Q psy12724         19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI-------------------------DNQDFV--------VS   65 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~-------------------------~~~~~v--------~~   65 (167)
                      -+.+.+|+++.|.|.+.+.+.   +.+.|+|++...+..                         ++...+        .+
T Consensus         3 ~v~~~~G~~v~L~C~~~~~p~---~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~   79 (363)
T 1wio_A            3 VVLGKKGDTVELTCTASQKKS---IQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS   79 (363)
T ss_dssp             EEEEETTSCEEECCCCTTCSS---CCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGC
T ss_pred             eEEEeCCCeEEEEEEecCCCc---eEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHC
Confidence            467899999999999986664   479999997542311                         011111        27


Q ss_pred             eeeEEEecCe-----------------EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC
Q psy12724         66 QSYTVNIMDE-----------------HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG  128 (167)
Q Consensus        66 g~y~c~~~~~-----------------~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g  128 (167)
                      |.|+|.+.+.                 .+.+|+++.|.|.+.+   +|.|.++|+|+++ .+.             ..++
T Consensus        80 G~Y~C~~~n~~~~~~l~V~~~~~~~~~~v~~G~~v~l~C~~~~---~p~~~v~W~~~~~-~~~-------------~~~~  142 (363)
T 1wio_A           80 DTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPP---GSSPSVQCRSPRG-KNI-------------QGGK  142 (363)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEEESSCSSEESBSCEEEEEECCT---TCCCCEEEECSSS-CEE-------------EESS
T ss_pred             EEEEEEEEECCCcEEEEEEeCCCCCceEEecCCCEEEEEEcCC---CCCCeEEEEcCCC-ccc-------------ccce
Confidence            9999998652                 3578999999999974   5889999999974 221             2357


Q ss_pred             eEEEeecCcCCCCcceEEEeeecC
Q psy12724        129 ELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       129 ~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .|.|.+++.+|+ |.|+|.|.|..
T Consensus       143 ~L~i~~v~~~d~-G~Y~C~a~~~~  165 (363)
T 1wio_A          143 TLSVSQLELQDS-GTWTCTVLQNQ  165 (363)
T ss_dssp             EEEECSBCGGGC-EECEEEEEETT
T ss_pred             EEEEeeCChhcC-CEEEEEEecCC
Confidence            899999999999 99999999875

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.65  E-value=1.4e-15  Score=114.32  Aligned_cols=126  Identities=13%  Similarity=0.092  Sum_probs=81.4

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCC--cceeeEEeeCCCceeee--c------------CCc-------------eE---
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSD--HLDVVSWADTDGGQYQI--D------------NQD-------------FV---   63 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~--~~~~i~W~k~~~~~~~~--~------------~~~-------------~v---   63 (167)
                      .++.+.+.+|+++.|.|.+.+.+..  ....+.|+|++. .+..  +            ..|             .+   
T Consensus         7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~-~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~   85 (222)
T 3sbw_C            7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDK-NIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQIT   85 (222)
T ss_dssp             SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTE-EEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEES
T ss_pred             CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCc-EEEEEeCCccccccccccccCceEEccccccCCEEEEEEc
Confidence            4456789999999999998766531  124799999741 1100  0            001             11   


Q ss_pred             -----EEeeeEEEecC------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee
Q psy12724         64 -----VSQSYTVNIMD------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM  114 (167)
Q Consensus        64 -----~~g~y~c~~~~------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~  114 (167)
                           .+|.|+|.+.+                        ..+.+|+++.|.|.+.+   .|.|.++|+++++..+..  
T Consensus        86 ~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g---~P~p~i~W~~~~g~~~~~--  160 (222)
T 3sbw_C           86 DVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEG---YPKAEVIWTSSDHQVLSG--  160 (222)
T ss_dssp             SCCGGGCEEEEEEEESSSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEE---BSCCEEEEEETTCCEECC--
T ss_pred             CcccccCeEEEEEEEeCCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecC---CCCCeEEEEECCCceecC--
Confidence                 27999998753                        12346999999999974   589999999995444421  


Q ss_pred             eecCCceE--EEccCCeEEEe---ecCcCCCCcceEEEeeecC
Q psy12724        115 TESTDGKY--LVLPSGELHIR---DVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       115 ~~~~~~r~--~~~~~g~L~I~---~v~~~D~~G~Y~C~a~n~~  152 (167)
                          ..+.  ....+|.+.+.   .+..+|+ |.|+|.|.|..
T Consensus       161 ----~~~~~~~~~~~~~~~~~~~l~v~~~d~-g~Y~C~a~n~~  198 (222)
T 3sbw_C          161 ----KTTTTNSKREEKLFNVTSTLRINTTTN-EIFYCTFRRLD  198 (222)
T ss_dssp             ----EEEEEECC----CEEEEEEEEEECCTT-CEEEEEEEETT
T ss_pred             ----ccceEEEcCCCCCEEEEEEEEEeccCC-cEEEEEEEeCc
Confidence                1222  12234444433   5678998 99999999987

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.65  E-value=1.2e-15  Score=116.53  Aligned_cols=136  Identities=18%  Similarity=0.266  Sum_probs=88.3

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCC-CcceeeEEeeCC-Cc--e-eeec--------CCc----------eE------
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVS-DHLDVVSWADTD-GG--Q-YQID--------NQD----------FV------   63 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~-~~~~~i~W~k~~-~~--~-~~~~--------~~~----------~v------   63 (167)
                      +...|.+..+.+|+++.|.|.+.+.+. ...+.+.|+|++ +.  . +...        ..|          .+      
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   83 (240)
T 1moe_A            4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVE   83 (240)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCC
Confidence            556788899999999999999988761 002579999863 11  1 1100        011          11      


Q ss_pred             --EEeeeEEEecC--------------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ce
Q psy12724         64 --VSQSYTVNIMD--------------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GE  108 (167)
Q Consensus        64 --~~g~y~c~~~~--------------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~  108 (167)
                        .+|.|.|.+.+                                ..+.+|+++.|.|.+.+. ..|.+.++|+|++ +.
T Consensus        84 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~-p~~~~~v~W~k~~~g~  162 (240)
T 1moe_A           84 ADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGF-NIKDTYMHWVKQRPEQ  162 (240)
T ss_dssp             GGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESS-CGGGSCEEEEEECTTS
T ss_pred             hhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCc-cCCCCEEEEEEECCCC
Confidence              27999998632                                134569999999999753 1124689999962 11


Q ss_pred             ee--EEee---------eecCCceEEEccC-----CeEEEeecCcCCCCcceEEEeee
Q psy12724        109 EL--FVDM---------TESTDGKYLVLPS-----GELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus       109 ~l--~~~~---------~~~~~~r~~~~~~-----g~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      .+  ....         .+...+|+.+..+     ..|.|.+++.+|+ |.|.|.|.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~~  219 (240)
T 1moe_A          163 GLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDT-AVYYCAPFG  219 (240)
T ss_dssp             CCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEECS
T ss_pred             CcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHC-EEEEEEEEe
Confidence            11  0000         0012356766533     3799999999999 999999984

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.65  E-value=3.5e-16  Score=106.16  Aligned_cols=83  Identities=14%  Similarity=0.293  Sum_probs=64.1

Q ss_pred             EEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcceE
Q psy12724         69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        69 ~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~  145 (167)
                      .-.+.+..+.+|+++.|.|.+.   |.|.|.++|+||+ ..+..    ....|+.+..++   .|.|.+++.+|+ |.|+
T Consensus         9 ~~~p~~~~v~~G~~~~l~C~~~---g~P~p~v~W~k~g-~~i~~----~~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~   79 (100)
T 3knb_A            9 EALPSDISIDEGKVLTVACAFT---GEPTPEVTWSCGG-RKIHS----QEQGRFHIENTDDLTTLIIMDVQKQDG-GLYT   79 (100)
T ss_dssp             CCCCSEEEEETTSEEEEEEEEE---EESCCEEEEEETT-EECCT----TGGGTEEEEECSSEEEEEESSCCGGGC-EEEE
T ss_pred             EeCCCcEEEeCCCeEEEEEEEE---EecCCEEEEEECc-eEeee----eccceeeeecccceEEEEEcCCCccCC-EEEE
Confidence            3345667889999999999998   4599999999997 56532    134577766544   699999999999 9999


Q ss_pred             EEeeecC---cceEEEee
Q psy12724        146 CRTKHRL---TGETRLSA  160 (167)
Q Consensus       146 C~a~n~~---~~~~~l~~  160 (167)
                      |.|+|..   +..+.|.+
T Consensus        80 C~a~N~~G~~~~~~~l~V   97 (100)
T 3knb_A           80 LSLGNEFGSDSATVNIHI   97 (100)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEEEECCCEEEEEEEEEE
Confidence            9999987   33445554

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.65  E-value=6.6e-16  Score=116.25  Aligned_cols=136  Identities=17%  Similarity=0.192  Sum_probs=88.0

Q ss_pred             EEEEEeCCcEEEEeecCCCCC--CcceeeEEeeCCCceee----------ec-C-------------CceE--------E
Q psy12724         19 DVFVIKGNAAVFKCNLPSFVS--DHLDVVSWADTDGGQYQ----------ID-N-------------QDFV--------V   64 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~~~~~--~~~~~i~W~k~~~~~~~----------~~-~-------------~~~v--------~   64 (167)
                      .+.+.+|+++.|.|.+.+.+.  ...+.+.|.+++.....          +. .             ...+        .
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D   83 (222)
T 4i0k_A            4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD   83 (222)
T ss_dssp             CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred             CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence            356889999999999987652  12357999998643210          00 0             1111        2


Q ss_pred             EeeeEEEecC--------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecC
Q psy12724         65 SQSYTVNIMD--------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTEST  118 (167)
Q Consensus        65 ~g~y~c~~~~--------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~  118 (167)
                      +|.|+|.+.+                          ..+.+|+++.|.|.+..  +.|.|.++|+++++..+...    .
T Consensus        84 ~G~Y~C~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~--g~P~~~v~W~~~~~~~~~~~----~  157 (222)
T 4i0k_A           84 EGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQ--GYPEAEVFWKDGQGVPLTGN----V  157 (222)
T ss_dssp             CSCEEEEEEECCCCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEE--EBSCCEEEEECTTSCBCCSE----E
T ss_pred             CEEEEEEEEeCCCceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEeccc--ccCCCeEEEEcCCCccCCCC----c
Confidence            7999998742                          23457999999999932  45889999999654444211    0


Q ss_pred             CceEEEccCCe---EEEeecCcCCCCcceEEEeeecC---cceEEEeee
Q psy12724        119 DGKYLVLPSGE---LHIRDVGPEDGYKSYQCRTKHRL---TGETRLSAT  161 (167)
Q Consensus       119 ~~r~~~~~~g~---L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~~  161 (167)
                      ........+|.   |.|.+++.+|+ |.|+|.|.|..   ...+.|.+.
T Consensus       158 ~~~~~~~~~~~~~~l~i~~v~~~d~-G~Y~C~a~n~~g~~~~~~~l~V~  205 (222)
T 4i0k_A          158 TTSQMANERGLFDVHSVLRVVLGAN-GTYSCLVRNPVLQQDAHGSVTIT  205 (222)
T ss_dssp             EEEEEECTTSCEEEEEEEEEECCTT-CEEEEEEEETTTTEEEEEEEECC
T ss_pred             ceeEEcCCCCeEEEEEEEEEEeCCC-CEEEEEEECCCCCCceEEEEEEe
Confidence            11122233454   89999999998 99999999987   334455543

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.64  E-value=1.2e-15  Score=121.16  Aligned_cols=129  Identities=12%  Similarity=0.092  Sum_probs=87.8

Q ss_pred             eeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee------cCCceE------EEeeeEEEecC---
Q psy12724         10 SQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI------DNQDFV------VSQSYTVNIMD---   74 (167)
Q Consensus        10 ~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~------~~~~~v------~~g~y~c~~~~---   74 (167)
                      .+.+...|. ..|.+|+++.|.|.+.+.+    +.+.|+|++......      ++...+      .+|.|+|.+.+   
T Consensus        24 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~----~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~   98 (316)
T 3vh8_G           24 KPFLSAWPS-AVVPRGGHVTLRCHYRHRF----NNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHS   98 (316)
T ss_dssp             CCEEEEESC-SEEETTSCEEEEEEBTTBC----CSEEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEEBCSSS
T ss_pred             CCEeeccCC-CccCCCCCEEEEEEccCCC----ceEEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEEEEcCCC
Confidence            344667776 6788999999999998873    369999997643211      111111      27999997531   


Q ss_pred             -----------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE-
Q psy12724         75 -----------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV-  124 (167)
Q Consensus        75 -----------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~-  124 (167)
                                                   ..+.+|++++|.|.+.+    +.+.+.|+|++. .+.+..   ...+... 
T Consensus        99 ~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~----~~~~~~w~k~g~-~~~~~~---~~~~~~~~  170 (316)
T 3vh8_G           99 PTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDI----MFEHFFLHKEGI-SKDPSR---LVGQIHDG  170 (316)
T ss_dssp             SSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEESS----CCSEEEEEETTC-CSCCEE---EECEEETT
T ss_pred             CcceecCCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcCCC----CCcEEEEEECCC-ccccce---eeeeecCC
Confidence                                         12567999999999953    455779999974 432110   0111110 


Q ss_pred             ccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        125 LPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       125 ~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..++.|.|.+++.+|+ |.|+|.|.|..
T Consensus       171 ~~~~~L~i~~v~~~D~-G~Y~C~a~n~~  197 (316)
T 3vh8_G          171 VSKANFSIGPMMLALA-GTYRCYGSVTH  197 (316)
T ss_dssp             EEEEEEEECSCCGGGC-EEEEEEEECTT
T ss_pred             CceEEEEECCCChhhC-ceEEEEEecCC
Confidence            1346899999999999 99999999875

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.64  E-value=1.4e-15  Score=117.99  Aligned_cols=145  Identities=14%  Similarity=0.200  Sum_probs=94.1

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cce---ee-e--------cCCc------------eE--
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQ---YQ-I--------DNQD------------FV--   63 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~---~~-~--------~~~~------------~v--   63 (167)
                      +.+...+.++.+.+|+++.|.|.+.+.+.   +.+.|+|.+ +..   +. .        ...|            .+  
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~---~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I   80 (256)
T 3tf7_C            4 QSVTQPDARVTVSEGASLQLRCKYSYSAT---PYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRK   80 (256)
T ss_dssp             CEEECSCSEEEEETTSCEEECCEEECSSC---CEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEE
T ss_pred             cEEEecCceEEecCCCeEEEEEEeCCCCC---ceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEE
Confidence            34666788999999999999999988754   479998842 110   10 0        0001            11  


Q ss_pred             ------EEeeeEEEecC-------------------------------------------------eEEEeCCcEEEEee
Q psy12724         64 ------VSQSYTVNIMD-------------------------------------------------EHVLKGNSAVLKCH   88 (167)
Q Consensus        64 ------~~g~y~c~~~~-------------------------------------------------~~v~~G~~a~l~C~   88 (167)
                            .+|.|.|.+.+                                                 ..+.+|++++|.|.
T Consensus        81 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~  160 (256)
T 3tf7_C           81 ASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCR  160 (256)
T ss_dssp             SSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEE
T ss_pred             CCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEE
Confidence                  27999998632                                                 12347999999999


Q ss_pred             eCCccCCcceeEEEEeCC-Ceee--EEeee-------ecCCceEEEcc----CCeEEEeecCcCCCCcceEEEeeecC--
Q psy12724         89 IPSFVADYVAVESWISDQ-GEEL--FVDMT-------ESTDGKYLVLP----SGELHIRDVGPEDGYKSYQCRTKHRL--  152 (167)
Q Consensus        89 ~~~~~~~p~p~i~W~k~~-~~~l--~~~~~-------~~~~~r~~~~~----~g~L~I~~v~~~D~~G~Y~C~a~n~~--  152 (167)
                      +.+   . .|.+.|+|+. +...  .....       ....+||.+..    ++.|.|.+++.+|+ |.|.|.|.|..  
T Consensus       161 ~~~---~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~a~n~~g~  235 (256)
T 3tf7_C          161 QTN---S-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQT-SLYFCASSDAPGQ  235 (256)
T ss_dssp             ECS---C-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGC-EEEEEEEEEETTE
T ss_pred             cCC---C-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHC-EEEEEEecCCCCc
Confidence            974   2 5679999842 1111  11000       00124555442    23799999999999 99999999974  


Q ss_pred             ---cceEEEeeeCC
Q psy12724        153 ---TGETRLSATKG  163 (167)
Q Consensus       153 ---~~~~~l~~~~~  163 (167)
                         ..-++|.+++.
T Consensus       236 ~~fG~gt~l~v~~~  249 (256)
T 3tf7_C          236 LYFGEGSKLTVLEL  249 (256)
T ss_dssp             EEECCCEEEEEECG
T ss_pred             cEECCCeEEEEEcc
Confidence               45566666543

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.64  E-value=2.4e-15  Score=117.42  Aligned_cols=128  Identities=19%  Similarity=0.235  Sum_probs=86.1

Q ss_pred             EEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cceeee--cCCceE----EEeeeEEEecC------------------
Q psy12724         20 VFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQYQI--DNQDFV----VSQSYTVNIMD------------------   74 (167)
Q Consensus        20 ~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~~~--~~~~~v----~~g~y~c~~~~------------------   74 (167)
                      ..+.+|+++.|.|.+. .|.   |.++|.+.+ +..+..  +.....    ..|.|+|.+.+                  
T Consensus       105 ~~v~~G~~v~l~C~~~-~p~---~~v~w~~~~~~~~~~~~~~~~~~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~  180 (289)
T 3mjg_X          105 IFLTEITEITIPCRVT-DPQ---LVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVS  180 (289)
T ss_dssp             EEESSCCCEEECCCBS-CTT---SCEEEEESSCCSCCCCCEETTTEEEECCCSSEEEEEEEETTEEEECCCEEEEECCCC
T ss_pred             EEeecCCeEEEEeEcC-CCC---ceEEEEeCCCCCccceeecCCcCeeeeccCcEEEEEEEeCCceeeeeeEEEEecCCC
Confidence            6789999999999998 443   358888875 333321  111111    36899997631                  


Q ss_pred             ----------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc------cCCeEEEeecCcC
Q psy12724         75 ----------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL------PSGELHIRDVGPE  138 (167)
Q Consensus        75 ----------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~------~~g~L~I~~v~~~  138 (167)
                                ..+.+|+++.|.|.+.+   +|.|.++|++++. .....    ........      ..+.|.|.+++.+
T Consensus       181 ~p~i~~~~~~~~v~~G~~v~L~C~~~g---~p~p~v~W~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~L~I~~v~~~  252 (289)
T 3mjg_X          181 SINVSVNAVQTVVRQGENITLMCIVIG---NEVVNFEWTYPRK-ESGRL----VEPVTDFLLDMPYHIRSILHIPSAELE  252 (289)
T ss_dssp             CCCCEEEESCSEEETTSCEEEEEEEES---CSSBEEEEECTTS-SSSCC----CCCEEEESCTTTTEEEEEEEESSCCSS
T ss_pred             CCCcEEeCCcceeEcCCCEEEEEEECC---CCCcceEEEcCCc-cCCCc----ccccccccCCcceEEEEEEEEcccChh
Confidence                      24578999999999974   5999999998753 21100    01111111      2358999999999


Q ss_pred             CCCcceEEEeeecC---cceEEEee
Q psy12724        139 DGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       139 D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                      |+ |.|+|.|.|..   ...+.|.+
T Consensus       253 D~-G~Y~C~a~N~~G~~~~~~~l~v  276 (289)
T 3mjg_X          253 DS-GTYTCNVTESVNDHQDEKAINI  276 (289)
T ss_dssp             CC-EEEEEEEEETTTTEEEEEEEEE
T ss_pred             hC-cEEEEEeecCCCCceeEEEEEE
Confidence            98 99999999988   33444444

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.64  E-value=3.7e-15  Score=115.97  Aligned_cols=132  Identities=19%  Similarity=0.347  Sum_probs=94.2

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee--cCC-ceE--------EEeeeEEEecC-------
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI--DNQ-DFV--------VSQSYTVNIMD-------   74 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~--~~~-~~v--------~~g~y~c~~~~-------   74 (167)
                      +...+.+..+.+|+++.|.|.+.+   .    +.|.+++......  ... ..+        ..|.|+|.+.+       
T Consensus         7 i~~~~~~~~v~~G~~v~L~C~~~~---~----v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~   79 (289)
T 3ejj_X            7 IEPSGPELVVEPGETVTLRCVSNG---S----VEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGST   79 (289)
T ss_dssp             EESCSSEEEECTTCCEEEEEECSS---C----CEEECSCSSSSEECCCSSCCEEEESSCCGGGCEEEEEECCC-----CE
T ss_pred             ecCCCceEEECCCCCEEEEEEeCC---c----EEEccCCCceEEEeccCCccEEEEeeeccccCEEEEEEEeccCCccee
Confidence            445667888999999999999976   2    8999875432211  111 111        27999998632       


Q ss_pred             -------------------eEEEeCCcEEEEeeeCCccCCccee-EEEEeCCCeeeEEeeeecCCceEEEccCCeEEEee
Q psy12724         75 -------------------EHVLKGNSAVLKCHIPSFVADYVAV-ESWISDQGEELFVDMTESTDGKYLVLPSGELHIRD  134 (167)
Q Consensus        75 -------------------~~v~~G~~a~l~C~~~~~~~~p~p~-i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~  134 (167)
                                         ..+.+|+++.|.|.+.+   .|.+. ++|+++++..+.      ...++.+..++.|.|.+
T Consensus        80 ~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~---~~~~~~v~W~~~~~~~~~------~~~~~~~~~~~~L~i~~  150 (289)
T 3ejj_X           80 TIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITD---PALKDSVSLMREGGRQVL------RKTVYFFSPWRGFIIRK  150 (289)
T ss_dssp             EEEEEECCSSCSEEESCSEEEEETTSCEEECEEESC---GGGGGSEEEEEGGGEECC------TTCCEEEETTTEEEESS
T ss_pred             EEEEEEeCCCcceecccceEEEecCCceEeEEEccC---CCcceEEEEEecCCeecC------CCccEEECCCCCEEEee
Confidence                               34567999999999985   35554 899876544442      46678888889999999


Q ss_pred             cCcCCCCcceEEEeeecC----cceEEEeee
Q psy12724        135 VGPEDGYKSYQCRTKHRL----TGETRLSAT  161 (167)
Q Consensus       135 v~~~D~~G~Y~C~a~n~~----~~~~~l~~~  161 (167)
                      ++.+|+ |.|+|.|.|..    +..+.|.+.
T Consensus       151 v~~~d~-G~Y~C~a~~~~~~~~~~~~~l~V~  180 (289)
T 3ejj_X          151 AKVLDS-NTYVCKTMVNGRESTSTGIWLKVN  180 (289)
T ss_dssp             CCGGGC-EEEEEEEEETTEEEECCCEEEEEE
T ss_pred             cccccC-EEEEEEEEeCCCccccccEEEEEE
Confidence            999999 99999999533    344455543

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.64  E-value=1.2e-16  Score=127.27  Aligned_cols=129  Identities=16%  Similarity=0.219  Sum_probs=50.9

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecC-------Cce------EEEeeeEEEecC-----
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN-------QDF------VVSQSYTVNIMD-----   74 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~-------~~~------v~~g~y~c~~~~-----   74 (167)
                      +...+++..+.+|+++.|.|.+.+.+.  .+.+.|+|++. .+..+.       ...      -..|.|+|.+.+     
T Consensus        11 ~~~~~~~~~v~~G~~v~l~C~~~~~~p--~~~v~W~k~g~-~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~   87 (334)
T 1ry7_B           11 EPGQQEQLVFGSGDAVELSCPPPGGGP--MGPTVWVKDGT-GLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVL   87 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCcCcEEEecCCcEEEEeeCCCCCC--CcceEEEECCe-eCCCcccEEeccceEEEeecccccCEEEEEEEEeCCeEE
Confidence            344588899999999999999987642  24799999864 333211       111      137999998643     


Q ss_pred             ---------------------------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCee
Q psy12724         75 ---------------------------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEE  109 (167)
Q Consensus        75 ---------------------------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~  109 (167)
                                                                   ..+.+|+++.|.|.+.+   .|.|.++|+|++ ..
T Consensus        88 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g---~p~~~v~W~~~~-~~  163 (334)
T 1ry7_B           88 CHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAG---NPTPSISWLKNG-RE  163 (334)
T ss_dssp             -------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCC---SSCCEEECCBTT-BC
T ss_pred             EEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccC---CCCCeEEEEECC-EE
Confidence                                                         23457999999999974   588999999997 45


Q ss_pred             eEEeeeecCCceEE-EccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        110 LFVDMTESTDGKYL-VLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       110 l~~~~~~~~~~r~~-~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +....   ....+. ...++.|.|.+++.+|+ |.|+|.|.|..
T Consensus       164 ~~~~~---~~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~a~n~~  203 (334)
T 1ry7_B          164 FRGEH---RIGGIKLRHQQWSLVMESVVPSDR-GNYTCVVENKF  203 (334)
T ss_dssp             CCTTS---STTCCCCCTTTTEEEECSCCGGGC-CCEEEEEEETT
T ss_pred             Ccccc---cccceecccceEEEEECCCCcccC-EEEEEEEEeCC
Confidence            43110   001111 12356899999999999 99999999986

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.64  E-value=3e-15  Score=115.84  Aligned_cols=137  Identities=18%  Similarity=0.274  Sum_probs=90.3

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cce---e----------------------eecCCc---
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQ---Y----------------------QIDNQD---   61 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~---~----------------------~~~~~~---   61 (167)
                      ++|...+.++.|.+|+++.|.|.+.+...+ .+.+.|+|.+ +..   +                      ..+...   
T Consensus         7 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   85 (256)
T 3juy_B            7 QVQLVQSGAEVKKPGASVKVSCQASGYRFS-HFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA   85 (256)
T ss_dssp             CCEEEECCCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred             eEEEEecCCceecCCCeEEEEEEeeccccc-CceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEE
Confidence            457788999999999999999999874221 2479999742 111   0                      000100   


Q ss_pred             eE--------EEeeeEEEecCe----------------------------------------------------EEEeCC
Q psy12724         62 FV--------VSQSYTVNIMDE----------------------------------------------------HVLKGN   81 (167)
Q Consensus        62 ~v--------~~g~y~c~~~~~----------------------------------------------------~v~~G~   81 (167)
                      .+        .+|.|.|.+.+.                                                    .+.+|+
T Consensus        86 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~  165 (256)
T 3juy_B           86 YMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGE  165 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTS
T ss_pred             EEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCC
Confidence            01        279999987542                                                    245799


Q ss_pred             cEEEEeeeCCccCCcc-eeEEEEeC--CCee-eEEee----eecCCceEEEccCC---eEEEeecCcCCCCcceEEEeee
Q psy12724         82 SAVLKCHIPSFVADYV-AVESWISD--QGEE-LFVDM----TESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus        82 ~a~l~C~~~~~~~~p~-p~i~W~k~--~~~~-l~~~~----~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      ++.|.|.+.+   .|. |.+.|+|.  +... +....    .....+|+.+..++   .|.|.+++.+|+ |.|.|.|.|
T Consensus       166 ~v~L~C~~~~---~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~  241 (256)
T 3juy_B          166 RATFSCRSSH---SIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDF-ALYYCQVYG  241 (256)
T ss_dssp             CEEEEEEESS---CCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-SEEEEEECC
T ss_pred             CEEEEEEECC---CcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHC-EEEEEEEee
Confidence            9999999985   354 88999983  2111 11000    00123566654433   599999999999 999999999


Q ss_pred             cC
Q psy12724        151 RL  152 (167)
Q Consensus       151 ~~  152 (167)
                      ..
T Consensus       242 ~~  243 (256)
T 3juy_B          242 AS  243 (256)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.64  E-value=3.2e-15  Score=129.27  Aligned_cols=131  Identities=15%  Similarity=0.237  Sum_probs=96.9

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE------EEeeeEEEecC-------------
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV------VSQSYTVNIMD-------------   74 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v------~~g~y~c~~~~-------------   74 (167)
                      ...+.+..+.+|+++.|.|.+.+.|.+   .++|+|++. .+..+....+      ..|.|+|.+.+             
T Consensus       385 ~~~~~~~~~~~g~~~~l~C~~~g~p~~---~i~W~~~g~-~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v  460 (642)
T 1e07_A          385 TISPSYTYYRPGVNLSLSCHAASNPPA---QYSWLIDGN-IQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTI  460 (642)
T ss_pred             eecCCceEecCCCcEEEEEEcCccCCC---eEEEEECCE-EcCCCceEEEccCChhhCeEEEEEEEcCCCCCcccceEEE
Confidence            455667788999999999999987754   799999853 3322221111      37999998743             


Q ss_pred             ----------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc-CCeEEEeecCc
Q psy12724         75 ----------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP-SGELHIRDVGP  137 (167)
Q Consensus        75 ----------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~-~g~L~I~~v~~  137 (167)
                                      ..+.+|+++.|.|.+.+    |.|.++|+|++ ..+.      ...|+.+.. ++.|.|.+++.
T Consensus       461 ~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~----~~~~i~W~~~g-~~l~------~~~~~~~~~~~~~L~i~~v~~  529 (642)
T 1e07_A          461 TVSAELPKPSISSNNSKPVEDKDAVAFTCEPEA----QNTTYLWWVNG-QSLP------VSPRLQLSNGNRTLTLFNVTR  529 (642)
T ss_pred             EEeccCCCceEecCCceeecCCCeEEEEEECCC----CCcEEEEEECC-EeCC------CCCcEEEcCCCcEEEEeecCh
Confidence                            12358999999999972    77899999997 4553      345666654 56899999999


Q ss_pred             CCCCcceEEEeeecCc----ceEEEee
Q psy12724        138 EDGYKSYQCRTKHRLT----GETRLSA  160 (167)
Q Consensus       138 ~D~~G~Y~C~a~n~~~----~~~~l~~  160 (167)
                      +|+ |.|+|.|.|...    ..+.|.+
T Consensus       530 ~d~-G~Y~C~a~n~~g~~~s~~~~l~V  555 (642)
T 1e07_A          530 NDA-RAYVCGIQNSVSANRSDPVTLDV  555 (642)
T ss_pred             hcC-ceEEEEeEcCCCCccCCCEEEEE
Confidence            999 999999999862    2355555

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.64  E-value=5e-15  Score=113.61  Aligned_cols=141  Identities=17%  Similarity=0.241  Sum_probs=92.6

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Ccee-------------------------eecCC--c-eE--
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQY-------------------------QIDNQ--D-FV--   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~-------------------------~~~~~--~-~v--   63 (167)
                      .++..+.|.+|+++.|.|.+.+.+.+ .+.+.|+|++ +..+                         ..+..  . .+  
T Consensus         7 ~~p~~~~v~~G~~v~L~C~~~g~p~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   85 (247)
T 2ghw_B            7 VQSGGGVVQPGKSLRLSCAASGFAFS-SYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQM   85 (247)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             EecCCEEEecCCcEEEEEEeccccCC-CceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEE
Confidence            45677899999999999999887632 2469999843 1110                         00000  0 11  


Q ss_pred             ------EEeeeEEEecC------------------------------------------eEEEeCCcEEEEeeeCCccCC
Q psy12724         64 ------VSQSYTVNIMD------------------------------------------EHVLKGNSAVLKCHIPSFVAD   95 (167)
Q Consensus        64 ------~~g~y~c~~~~------------------------------------------~~v~~G~~a~l~C~~~~~~~~   95 (167)
                            .+|.|.|.+.+                                          ..+.+|+++.|.|.+.+   .
T Consensus        86 ~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~---~  162 (247)
T 2ghw_B           86 NSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQ---S  162 (247)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESS---C
T ss_pred             CcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCC---C
Confidence                  17999997632                                          12457999999999985   4


Q ss_pred             cceeEEEEe--CCCeeeEEe-e-----eecCCceEEEccC---CeEEEeecCcCCCCcceEEEeeecC----cceEEEee
Q psy12724         96 YVAVESWIS--DQGEELFVD-M-----TESTDGKYLVLPS---GELHIRDVGPEDGYKSYQCRTKHRL----TGETRLSA  160 (167)
Q Consensus        96 p~p~i~W~k--~~~~~l~~~-~-----~~~~~~r~~~~~~---g~L~I~~v~~~D~~G~Y~C~a~n~~----~~~~~l~~  160 (167)
                      |.|.++|+|  ++ ..+... .     .....+|+.+..+   +.|.|.+++.+|+ |.|.|.|.|..    +..++|.+
T Consensus       163 ~~~~v~W~k~~~g-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~~~~~~~~g~~t~l~V  240 (247)
T 2ghw_B          163 VRSNLAWYQQKPG-QAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDF-AVYYCQQRSNWPPTFGQGTKVEV  240 (247)
T ss_dssp             CTTCEEEEEECTT-SCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGC-EEEEEEECSSSSCEECCCEEEEE
T ss_pred             ccceEEEEEECCC-CCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHC-EEEEEEEccCCCceEcCCEEEEE
Confidence            777999999  44 222100 0     0012356766533   3699999999999 99999999853    45566666


Q ss_pred             e
Q psy12724        161 T  161 (167)
Q Consensus       161 ~  161 (167)
                      .
T Consensus       241 ~  241 (247)
T 2ghw_B          241 K  241 (247)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.64  E-value=1.1e-15  Score=122.38  Aligned_cols=123  Identities=16%  Similarity=0.207  Sum_probs=84.7

Q ss_pred             EEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc------eE--------EEeeeEEEecCe----------
Q psy12724         20 VFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD------FV--------VSQSYTVNIMDE----------   75 (167)
Q Consensus        20 ~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~------~v--------~~g~y~c~~~~~----------   75 (167)
                      ..+.+|+++.|.|.+.+.|.  .|.+.|+|++. .+..+..+      .+        ..|.|+|.+.+.          
T Consensus       138 ~~~~~G~~v~L~C~~~g~p~--~~~i~W~k~~~-~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~  214 (329)
T 3oq3_B          138 LGTHDKYGIDLYCGILYAKH--YNNITWYKNNQ-ELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVV  214 (329)
T ss_dssp             TTSSTTTCEEEECCCCSCCC--CCEEEEEETTE-ECCCSSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEE
T ss_pred             eEEeCCCcEEEEeccCCCCC--CceEEEEECCc-cCCCCCceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEE
Confidence            33567999999999998872  24799999865 33221111      11        269999987621          


Q ss_pred             ------------------------EEEeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeeeecCCceEEEc-----
Q psy12724         76 ------------------------HVLKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMTESTDGKYLVL-----  125 (167)
Q Consensus        76 ------------------------~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~~~~~~r~~~~-----  125 (167)
                                              .+.+|+++.|.|.+.+....+.| .++|+|++. .+.+.     +.+....     
T Consensus       215 s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~-~i~~~-----~~~~~~~~~~~~  288 (329)
T 3oq3_B          215 SRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSG-WIIGL-----DFGVYSILTSSG  288 (329)
T ss_dssp             EEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTS-CBCCB-----CSSEEEEEEEET
T ss_pred             EeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCe-eeecc-----CCceeeeecccC
Confidence                                    22469999999999854111277 889999974 43221     2221111     


Q ss_pred             --cCCeEEEeecCcCCCCc-ceEEEeeecC
Q psy12724        126 --PSGELHIRDVGPEDGYK-SYQCRTKHRL  152 (167)
Q Consensus       126 --~~g~L~I~~v~~~D~~G-~Y~C~a~n~~  152 (167)
                        .++.|.|.+++.+|+ | .|+|.|.|..
T Consensus       289 ~~~~~~L~I~~v~~~D~-G~~Y~C~a~N~~  317 (329)
T 3oq3_B          289 GITEATLYFENVTEEYI-GNTYTCRGHNYY  317 (329)
T ss_dssp             TEEEEEEEESSCCGGGT-TCEEEEEEECSS
T ss_pred             ceeEeEEEEEeccHHHC-CCcEEEEEEecC
Confidence              356899999999998 9 9999999987

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.63  E-value=1.4e-14  Score=111.17  Aligned_cols=138  Identities=15%  Similarity=0.221  Sum_probs=89.7

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCC--cceeeEEeeCC-Cce---eeec--------CCc----------eE-----
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSD--HLDVVSWADTD-GGQ---YQID--------NQD----------FV-----   63 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~--~~~~i~W~k~~-~~~---~~~~--------~~~----------~v-----   63 (167)
                      +...|.++.|.+|+++.|.|.+.+.+..  ..+.+.|+|++ +..   +...        ..|          .+     
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   83 (247)
T 1svz_A            4 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV   83 (247)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCC
Confidence            4567888999999999999999877620  02479999853 211   1100        011          11     


Q ss_pred             ---EEeeeEEEecC---------------------------------------eEEEeCCcEEEEeeeCCccCCcceeEE
Q psy12724         64 ---VSQSYTVNIMD---------------------------------------EHVLKGNSAVLKCHIPSFVADYVAVES  101 (167)
Q Consensus        64 ---~~g~y~c~~~~---------------------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~  101 (167)
                         .+|.|.|.+.+                                       ..+.+|++|.|.|.+.+. ..|.+.+.
T Consensus        84 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~-~~~~~~v~  162 (247)
T 1svz_A           84 EAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNY-AFTDYSMH  162 (247)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESS-CGGGSCEE
T ss_pred             CHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCc-ccCCcEEE
Confidence               27999998632                                       124569999999999753 11357899


Q ss_pred             EEeCC-Ceee--EEeee---------ecCCceEEEcc-----CCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        102 WISDQ-GEEL--FVDMT---------ESTDGKYLVLP-----SGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       102 W~k~~-~~~l--~~~~~---------~~~~~r~~~~~-----~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |+|++ +..+  .....         ....+|+.+..     .+.|.|++++.+|+ |.|.|.|.|..
T Consensus       163 W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~a~n~~  229 (247)
T 1svz_A          163 WVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDT-ATYFCVRDRHD  229 (247)
T ss_dssp             EEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEEEGG
T ss_pred             EEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHC-EEEEEEEeccC
Confidence            99963 1111  10000         01145776653     24799999999999 99999999963

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.63  E-value=3.9e-16  Score=126.57  Aligned_cols=133  Identities=19%  Similarity=0.266  Sum_probs=97.8

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCC-CCCCcceeeEEeeCCCceeeecC----------CceE------EEeeeEEEec
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPS-FVSDHLDVVSWADTDGGQYQIDN----------QDFV------VSQSYTVNIM   73 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~-~~~~~~~~i~W~k~~~~~~~~~~----------~~~v------~~g~y~c~~~   73 (167)
                      +.|...|.+..+.+|+++.|.|.+.+ .+.   +.+.|+|++. .+..+.          ...+      ..|.|+|.+.
T Consensus         7 P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~---~~v~W~k~g~-~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   82 (395)
T 1bih_A            7 PVLKDQPAEVLFRENNPTVLECIIEGNDQG---VKYSWKKDGK-SYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAE   82 (395)
T ss_dssp             CEECCCCSEEEEETTSCEEECCCEESCCSS---CEEEEEESSS-BCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEE
T ss_pred             CEeecCCCceEEeCCCEEEEEEEEecCCCC---ceEEEEECCc-CcccccceEEEecCCceEEEecCCCCCCcEEEEEEE
Confidence            45888899999999999999999988 443   5899999854 333211          1111      2799999874


Q ss_pred             C--------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC--eeeEEeeeecCCceEEEc
Q psy12724         74 D--------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQG--EELFVDMTESTDGKYLVL  125 (167)
Q Consensus        74 ~--------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~--~~l~~~~~~~~~~r~~~~  125 (167)
                      +                          ..+.+|+++.|.|.+..  +.|.|.++|+|++.  .+....  .....++...
T Consensus        83 n~~g~~~s~~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~--~~p~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~  158 (395)
T 1bih_A           83 TPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPN--AYPKPLITWKKRLSGADPNADV--TDFDRRITAG  158 (395)
T ss_dssp             ETTEEEECCCEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCE--EESCCEEEEEEEETTSCGGGCC--CCCCTTEEEC
T ss_pred             eCCCeEEeEEEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCC--CCCCCeEEEEecCCCcCccccc--ccccccEEEc
Confidence            3                          12347999999999732  45889999999851  111100  0115678888


Q ss_pred             cCCeEEEeecCcCCCCc---ceEEEeeecC
Q psy12724        126 PSGELHIRDVGPEDGYK---SYQCRTKHRL  152 (167)
Q Consensus       126 ~~g~L~I~~v~~~D~~G---~Y~C~a~n~~  152 (167)
                      .+|.|.|.+++.+|+ |   .|+|.|.|..
T Consensus       159 ~~~~L~i~~v~~~d~-G~~~~Y~C~a~n~~  187 (395)
T 1bih_A          159 PDGNLYFTIVTKEDV-SDIYKYVCTAKNAA  187 (395)
T ss_dssp             TTSCEEEEEECGGGC-CSSEEEEEEEECTT
T ss_pred             CCCcEEEEEEeeccC-CCceEEEEEEEecc
Confidence            899999999999999 9   9999999987

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.63  E-value=5.1e-15  Score=116.63  Aligned_cols=149  Identities=16%  Similarity=0.262  Sum_probs=95.8

Q ss_pred             EeeeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Ccee---e-ec------------CCc---------
Q psy12724          8 VISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQY---Q-ID------------NQD---------   61 (167)
Q Consensus         8 v~~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~---~-~~------------~~~---------   61 (167)
                      ...+....+|.++.+.+|+++.|.|.+.+.+.+ .+.+.|+|++ +..+   . .+            ..|         
T Consensus        24 ~~~~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~  102 (282)
T 1qok_A           24 AMAQVKLQQSGAELVRSGTSVKLSCTASGFNIK-DSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSS  102 (282)
T ss_dssp             ---CCEEEECCCEEEETTCCEEEEEEEESSCGG-GSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTT
T ss_pred             ccceEEEECCCCEEEeCCCeEEEEEeccCCCCC-CceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCC
Confidence            334556678889999999999999999876521 2479999864 1111   0 00            001         


Q ss_pred             ---eE--------EEeeeEEEecCe---------------------------------------------EEEeCCcEEE
Q psy12724         62 ---FV--------VSQSYTVNIMDE---------------------------------------------HVLKGNSAVL   85 (167)
Q Consensus        62 ---~v--------~~g~y~c~~~~~---------------------------------------------~v~~G~~a~l   85 (167)
                         .+        .+|.|.|.+.+.                                             .+.+|+++.|
T Consensus       103 ~~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L  182 (282)
T 1qok_A          103 NTAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTI  182 (282)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEE
T ss_pred             CeEEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEE
Confidence               11        169999976321                                             2456999999


Q ss_pred             EeeeCCccCCcceeEEEEe--CCCeeeEE--ee----eecCCceEEEcc---CCeEEEeecCcCCCCcceEEEeeecC--
Q psy12724         86 KCHIPSFVADYVAVESWIS--DQGEELFV--DM----TESTDGKYLVLP---SGELHIRDVGPEDGYKSYQCRTKHRL--  152 (167)
Q Consensus        86 ~C~~~~~~~~p~p~i~W~k--~~~~~l~~--~~----~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~C~a~n~~--  152 (167)
                      .|.+.+   .| |.++|+|  ++ ..+..  ..    .....+||.+..   .+.|.|++++.+|+ |.|.|.|.|..  
T Consensus       183 ~C~~~~---~~-~~v~W~k~~~g-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~a~~~~~~  256 (282)
T 1qok_A          183 TCSASS---SV-SYMHWFQQKPG-TSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDA-ATYYCQQRSSYPL  256 (282)
T ss_dssp             EEEESS---CC-SCCEEEEECTT-SCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSSSSC
T ss_pred             EEEecC---CC-ceEEEEEECCC-CCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHC-EEEEEEEeeCCCc
Confidence            999985   46 8899999  44 22211  00    001135676542   33799999999999 99999999843  


Q ss_pred             --cceEEEeeeCC
Q psy12724        153 --TGETRLSATKG  163 (167)
Q Consensus       153 --~~~~~l~~~~~  163 (167)
                        +..++|.+.+.
T Consensus       257 ~fg~gt~l~V~~~  269 (282)
T 1qok_A          257 TFGAGTKLELKRA  269 (282)
T ss_dssp             EECCCEEEEEC--
T ss_pred             eEeCCEEEEEecc
Confidence              55677777543

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.63  E-value=1.1e-15  Score=127.72  Aligned_cols=121  Identities=8%  Similarity=0.080  Sum_probs=83.2

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec---------CCc------eE--------EEeeeEEEec
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID---------NQD------FV--------VSQSYTVNIM   73 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~---------~~~------~v--------~~g~y~c~~~   73 (167)
                      +.+..+.+|+++.|.|.+.+.+.+  |.|+|+|++.. +...         +.+      .+        .+|.|+|.+.
T Consensus       234 ~~~~~v~~G~~v~L~C~~~g~~p~--p~i~W~k~g~~-l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~  310 (423)
T 3qs7_E          234 LPQLFLKVGEPLWIRCKAVHVNHG--FGLTWELENKA-LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSS  310 (423)
T ss_dssp             TTEEEEETTSCEEEEEEEEESSSC--CCEEEEESSSB-CCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEET
T ss_pred             CCceEEeCCCeEEEEEEEEcCCCC--cEEEEEECCEE-ccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEe
Confidence            447789999999999999874332  47999998653 2111         111      11        2799999886


Q ss_pred             Ce------------------------EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCe
Q psy12724         74 DE------------------------HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGE  129 (167)
Q Consensus        74 ~~------------------------~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~  129 (167)
                      |.                        .+.+|+++.|.|.+.+   .|.|.++|+||+ ..+..      +.+. ...+-.
T Consensus       311 N~~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g---~P~p~i~W~k~g-~~l~~------~~~~-~~~~~~  379 (423)
T 3qs7_E          311 KHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKA---YPQIRCTWTFSR-KSFPC------EQKG-LDNGYS  379 (423)
T ss_dssp             TEEEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEE---ESCCEEEEEETT-EEEEC------BCCB-CSSSSE
T ss_pred             cCCCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEE---cCCCeEEEEECC-EECCC------cccc-ccCCcE
Confidence            52                        1246899999999984   489999999997 56632      1110 001112


Q ss_pred             EEEeecCcCCCCcceEEEeeecC
Q psy12724        130 LHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       130 L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.+.+...+|+ |.|+|.|.|..
T Consensus       380 ~~~~~~~~~D~-G~YtC~A~N~~  401 (423)
T 3qs7_E          380 ISKFCNHKHQP-GEYIFHAENDD  401 (423)
T ss_dssp             EEEECCCTTCC-SCEEEEEEETT
T ss_pred             EEEEecccccC-EEEEEEEEcCC
Confidence            23366778999 99999999998

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.63  E-value=3.5e-15  Score=115.51  Aligned_cols=144  Identities=17%  Similarity=0.270  Sum_probs=92.1

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Ccee--e--ec------------CCc------------eE--
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQY--Q--ID------------NQD------------FV--   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~--~--~~------------~~~------------~v--   63 (167)
                      .++..+.+.+|+++.|.|.+.+.+.. .+.+.|+|.. +..+  .  .+            ..|            .+  
T Consensus         7 ~~~~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   85 (256)
T 3umt_A            7 QQSGLELVKPGASVKISCKTSGYTFT-EYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLEL   85 (256)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             EccCceEEcCCCCEEEEEEEeccccc-ccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEE
Confidence            34556789999999999999876522 2479998742 2211  0  00            001            01  


Q ss_pred             ------EEeeeEEEecC---------------------------------------------eEEEeCCcEEEEeeeCCc
Q psy12724         64 ------VSQSYTVNIMD---------------------------------------------EHVLKGNSAVLKCHIPSF   92 (167)
Q Consensus        64 ------~~g~y~c~~~~---------------------------------------------~~v~~G~~a~l~C~~~~~   92 (167)
                            .+|.|.|.+.+                                             ..+.+|++++|.|.+.+ 
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~-  164 (256)
T 3umt_A           86 RSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQ-  164 (256)
T ss_dssp             CSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESS-
T ss_pred             CCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEec-
Confidence                  17999997632                                             13457999999999984 


Q ss_pred             cCCcceeEEEEeCC-CeeeEE-ee-----eecCCceEEEccCC---eEEEeecCcCCCCcceEEEeeecC----cceEEE
Q psy12724         93 VADYVAVESWISDQ-GEELFV-DM-----TESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQCRTKHRL----TGETRL  158 (167)
Q Consensus        93 ~~~p~p~i~W~k~~-~~~l~~-~~-----~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~C~a~n~~----~~~~~l  158 (167)
                        .|.|.+.|+|+. +..+.. ..     .....+|+.+..++   .|.|.+++.+|+ |.|.|.|.|..    +..++|
T Consensus       165 --~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~~~~fg~gt~L  241 (256)
T 3umt_A          165 --DIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDF-VDYYCLQYASSPPTFGGGTKL  241 (256)
T ss_dssp             --CCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGC-SEEEEEECSSSSCEECCCEEE
T ss_pred             --CCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHC-EEEEEEEeeCCCcEECCCEEE
Confidence              477799999842 111110 00     00113566654333   599999999999 99999999854    556777


Q ss_pred             eeeCC
Q psy12724        159 SATKG  163 (167)
Q Consensus       159 ~~~~~  163 (167)
                      ++.+.
T Consensus       242 ~V~~~  246 (256)
T 3umt_A          242 EIKRA  246 (256)
T ss_dssp             EEC--
T ss_pred             EEECC
Confidence            77543

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.62  E-value=1.4e-15  Score=113.98  Aligned_cols=127  Identities=20%  Similarity=0.279  Sum_probs=84.2

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Ccee---e------ec--CCc----------eE--------EEe
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQY---Q------ID--NQD----------FV--------VSQ   66 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~---~------~~--~~~----------~v--------~~g   66 (167)
                      |.++.+.+|+++.|.|.+.+.+.   +.+.|+|++ +..+   .      ..  ..+          .+        .+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~---~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   83 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVT---SRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTA   83 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccC---CCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCe
Confidence            78899999999999999988764   369998853 2111   0      00  011          11        279


Q ss_pred             eeEEEecCe-----------E---------E---------EeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEe-e-
Q psy12724         67 SYTVNIMDE-----------H---------V---------LKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVD-M-  114 (167)
Q Consensus        67 ~y~c~~~~~-----------~---------v---------~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~-~-  114 (167)
                      .|.|.+.+.           .         +         ..|+++.|.|.+.+.  .|.| .++|+||+ ..+... . 
T Consensus        84 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~--~p~~~~v~W~k~g-~~~~~~~~~  160 (210)
T 1lk3_L           84 IYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNF--YPRDISVKWKIDG-TERRDGVLD  160 (210)
T ss_dssp             EEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEE--BSSCCEEEEEETT-EECCTTEEE
T ss_pred             EEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeE--eCCceEEEEEeCC-ccCCCCceE
Confidence            999987430           0         1         148899999999753  2544 79999997 454211 0 


Q ss_pred             ----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        115 ----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       115 ----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                          ....++.|..  ...|.|.+++.+|+ |.|+|.|.|..
T Consensus       161 ~~~~~~~~~~~~~~--~s~L~i~~~~~~d~-G~Y~C~a~n~~  199 (210)
T 1lk3_L          161 SVTDQDSKDSTYSM--SSTLSLTKADYESH-NLYTCEVVHKT  199 (210)
T ss_dssp             EECCCCTTTCCEEE--EEEEEEEHHHHHTC-CEEEEEEECTT
T ss_pred             ccCCccCCCCCEEE--EEEEEEChHHhccC-CcEEEEEEecC
Confidence                0001122221  13699999999999 99999999986

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.62  E-value=1.3e-15  Score=102.22  Aligned_cols=81  Identities=10%  Similarity=0.124  Sum_probs=63.5

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcce
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSY  144 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y  144 (167)
                      +.-.+.+..+.+|++|.|.|.+.+    |.|.++|+||+ ..+.      .+.|+.+..+|   .|.|++++.+|+ |.|
T Consensus         8 ~~~~~~~~~v~~G~~v~l~C~v~~----~~~~v~W~k~g-~~i~------~~~~~~i~~~g~~~~L~I~~v~~~D~-G~Y   75 (93)
T 1waa_A            8 VEKPLYGVEVFVGETAHFEIELSE----PDVHGQWKLKG-QPLA------ASPDCEIIEDGKKHILILHNCQLGMT-GEV   75 (93)
T ss_dssp             EEECCCCEEEETTSCEEEEEEESS----SSCCCEEEETT-EECC------CBTTEEEEEETTEEEEEECSCCGGGC-EEE
T ss_pred             eeccCcceEEeCCCCEEEEEEECC----CCCeEEEEECC-EECc------CCCCEEEEEECCEEEEEECCCChhhC-EEE
Confidence            334456788999999999999963    44779999997 5663      34677776655   699999999999 999


Q ss_pred             EEEeeecCcceEEEeee
Q psy12724        145 QCRTKHRLTGETRLSAT  161 (167)
Q Consensus       145 ~C~a~n~~~~~~~l~~~  161 (167)
                      +|.|.|.. ..+.|.+.
T Consensus        76 ~C~a~n~~-~sa~L~V~   91 (93)
T 1waa_A           76 SFQAANTK-SAANLKVK   91 (93)
T ss_dssp             EEEETTEE-EEEEEEEE
T ss_pred             EEEECCCc-EEEEEEEE
Confidence            99999974 56666664

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.62  E-value=7.9e-16  Score=119.99  Aligned_cols=141  Identities=16%  Similarity=0.198  Sum_probs=93.1

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecC--------CceE------EEeeeEEEecC----
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN--------QDFV------VSQSYTVNIMD----   74 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~--------~~~v------~~g~y~c~~~~----   74 (167)
                      |...+.+..+.+|+++.|.|.+.+ +.. .+.+.|+++++..+..+.        ...+      ..|.|+|.+.+    
T Consensus        92 ~~~~~~~~~v~~g~~v~l~C~~~~-~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  169 (292)
T 4dkd_C           92 WNVLAQEVVVFEDQDALLPCLLTD-PVL-EAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRK  169 (292)
T ss_dssp             EEESCSEEEEETTSCEECCEEESS-GGG-GSSEEEEEGGGCCCCSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSC
T ss_pred             ccccCCeEEEcCCCcEEEeeeCCC-CCc-ceeEEEEecCCCccccCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCc
Confidence            556677888999999999999987 321 247999998665443211        1111      27999998742    


Q ss_pred             --------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-eecCCceEEEccC
Q psy12724         75 --------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-TESTDGKYLVLPS  127 (167)
Q Consensus        75 --------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-~~~~~~r~~~~~~  127 (167)
                                                ..+.+|+++.|.|.+.+.  .|.+.+.|++++. .+.... .....+++.  .+
T Consensus       170 ~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~--~~~~~~~w~~~~~-~~~~~~~~~~~~~~~~--~~  244 (292)
T 4dkd_C          170 VMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSV--DVNFDVFLQHNNT-KLAIPQQSDFHNNRYQ--KV  244 (292)
T ss_dssp             EECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEES--SSCCEEECCBSSC-CCCCCBEEEEETTEEE--EE
T ss_pred             eeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCC--CCceEEEEeCCCc-ccccCccceeccceee--eE
Confidence                                      112479999999999743  2446788988873 332100 000112221  34


Q ss_pred             CeEEEeecCcCCCCcceEEEeeecC---cceEEEeee
Q psy12724        128 GELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSAT  161 (167)
Q Consensus       128 g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~~  161 (167)
                      +.|.|.+++.+|+ |.|+|.|.|..   +..+.|.+.
T Consensus       245 ~~L~i~~v~~~d~-G~Y~C~a~N~~g~~~~~~~l~V~  280 (292)
T 4dkd_C          245 LTLNLDQVDFQHA-GNYSCVASNVQGKHSTSMFFRVV  280 (292)
T ss_dssp             EEEEESSCCTTSC-EEEEEEEECSSCEEEEEEEECC-
T ss_pred             EEEEECccChhcC-eEEEEEEecCCCCceeEEEEEEe
Confidence            5899999999998 99999999987   344555553

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.62  E-value=1.7e-14  Score=112.22  Aligned_cols=143  Identities=18%  Similarity=0.236  Sum_probs=94.0

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Ccee---ee-c------------CCc------------eE-
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQY---QI-D------------NQD------------FV-   63 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~---~~-~------------~~~------------~v-   63 (167)
                      ..+|.++.|.+|+++.|.|.+.+.+.+ .+.+.|+|++ +..+   .. +            ..|            .+ 
T Consensus         4 l~~p~~~~v~~G~~v~L~C~~~g~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   82 (256)
T 1nqb_A            4 LQQSGAELVKPGASVKLSCKASGYTFT-SYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQ   82 (256)
T ss_dssp             EEECCCEEECTTCCEEEEEEECSSCGG-GSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             EECCCCeeecCCCcEEEEEEeccccCC-CceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEE
Confidence            356778899999999999999887522 2579999853 2111   00 0            011            11 


Q ss_pred             -------EEeeeEEEecCe------------------------------EEEeCCcEEEEeeeCCccCCcce-----eEE
Q psy12724         64 -------VSQSYTVNIMDE------------------------------HVLKGNSAVLKCHIPSFVADYVA-----VES  101 (167)
Q Consensus        64 -------~~g~y~c~~~~~------------------------------~v~~G~~a~l~C~~~~~~~~p~p-----~i~  101 (167)
                             .+|.|.|.+.+.                              .+.+|+++.|.|.+.+.   |.|     .++
T Consensus        83 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~---~~~~~~~~~v~  159 (256)
T 1nqb_A           83 LSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQS---IVHSNGNTYLE  159 (256)
T ss_dssp             ECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSC---CBCTTSCBCEE
T ss_pred             ECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCc---ccccccceEEE
Confidence                   179999986431                              24579999999999853   543     899


Q ss_pred             EEe--CCCeeeEE--ee----eecCCceEEEcc---CCeEEEeecCcCCCCcceEEEeeecC----cceEEEeeeC
Q psy12724        102 WIS--DQGEELFV--DM----TESTDGKYLVLP---SGELHIRDVGPEDGYKSYQCRTKHRL----TGETRLSATK  162 (167)
Q Consensus       102 W~k--~~~~~l~~--~~----~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~C~a~n~~----~~~~~l~~~~  162 (167)
                      |+|  ++ ..+..  ..    .....+||.+..   .+.|.|.+++.+|+ |.|.|.|.|..    +..++|++.+
T Consensus       160 W~k~~~g-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~a~~~~~~~fg~gt~l~V~~  233 (256)
T 1nqb_A          160 WYLQKPG-QSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDL-GVYYCFQGSHVPYTFGGGTKLEIKR  233 (256)
T ss_dssp             EEEECTT-SCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSSSSCEECCCEEEEECC
T ss_pred             EEEECCC-CCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHC-EEEEEEEccCCceEECCCEEEEEEC
Confidence            999  44 23210  00    001135665542   24799999999999 99999999843    4566777653

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.62  E-value=1e-14  Score=109.21  Aligned_cols=130  Identities=20%  Similarity=0.294  Sum_probs=85.6

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC--Cce-ee-e--------cCCc----------eE-------
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD--GGQ-YQ-I--------DNQD----------FV-------   63 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~--~~~-~~-~--------~~~~----------~v-------   63 (167)
                      +...+ ++.+.+|+++.|.|.+.+.+.   +.+.|+|.+  ... .. .        ...|          .+       
T Consensus         4 v~~~~-~~~v~~G~~v~L~C~~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   79 (213)
T 3mj8_L            4 LTQPP-LVSVALGQKATITCSGDKLSD---VYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQA   79 (213)
T ss_dssp             BBCCS-EEEEETTSCEEEEEECSSTTT---SCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             EEeCC-cEEEeCCCCEEEEEEcCCCCC---ceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCCh
Confidence            34455 889999999999999996654   479999832  111 10 0        0011          01       


Q ss_pred             -EEeeeEEEecCe-------------EE-------------------EeCCcEEEEeeeCCccCCcc-eeEEEEeCCCee
Q psy12724         64 -VSQSYTVNIMDE-------------HV-------------------LKGNSAVLKCHIPSFVADYV-AVESWISDQGEE  109 (167)
Q Consensus        64 -~~g~y~c~~~~~-------------~v-------------------~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~  109 (167)
                       .+|.|.|.+.+.             .|                   .+|+++.|.|.+.+.  .|. +.++|+||+ ..
T Consensus        80 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~--~p~~~~v~W~k~g-~~  156 (213)
T 3mj8_L           80 GDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGF--YPADVAVTWEADG-TP  156 (213)
T ss_dssp             GGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEE--BSSCCEEEEEETT-EE
T ss_pred             hhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeece--eCCCeEEEEEcCC-cc
Confidence             279999987320             11                   149999999999753  233 489999997 55


Q ss_pred             eEEeee----ecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        110 LFVDMT----ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       110 l~~~~~----~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.....    ...++.|.+  .+.|.|.+++.+|+ |.|+|.|.|..
T Consensus       157 l~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~-G~Y~C~a~n~~  200 (213)
T 3mj8_L          157 ITQGVKTTQPSKSDSKYMA--TSYLTMTADAWKSR-NTFICKVTHGG  200 (213)
T ss_dssp             ECTTEEECCCEEETTEEEE--EEEEEEESHHHHSC-SCEEEEEEETT
T ss_pred             cCCCcccCCcCccCCcEEE--EEEEEEeHHHcCCC-CEEEEEEEECC
Confidence            531100    001233433  35699999999999 99999999987

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.62  E-value=6.7e-16  Score=119.31  Aligned_cols=144  Identities=19%  Similarity=0.271  Sum_probs=87.5

Q ss_pred             eeeEEEeeec-eeeEEeEEEEEeCCcEEEEeecCCCCCC--cceeeEEeeCC-Cce---eee------c--CCc------
Q psy12724          3 FWPVAVISQY-YEAQVYDVFVIKGNAAVFKCNLPSFVSD--HLDVVSWADTD-GGQ---YQI------D--NQD------   61 (167)
Q Consensus         3 ~~~~av~~~~-~~~~~~~~~v~~G~~~~l~C~a~~~~~~--~~~~i~W~k~~-~~~---~~~------~--~~~------   61 (167)
                      +|+.++..+. +...+.++.+.+|+++.|.|.+.+.+..  ..+.|.|+|++ +..   +..      .  ..|      
T Consensus        26 l~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  105 (252)
T 3bkj_L           26 FWIPGSSSDVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGS  105 (252)
T ss_dssp             --------CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE
T ss_pred             HhccccccccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEcc
Confidence            3444444443 4556888999999999999999887611  02579999864 211   100      0  011      


Q ss_pred             ----eE--------EEeeeEEEecCe-----------E---------E---------EeCCcEEEEeeeCCccCCcce-e
Q psy12724         62 ----FV--------VSQSYTVNIMDE-----------H---------V---------LKGNSAVLKCHIPSFVADYVA-V   99 (167)
Q Consensus        62 ----~v--------~~g~y~c~~~~~-----------~---------v---------~~G~~a~l~C~~~~~~~~p~p-~   99 (167)
                          .+        .+|.|.|.+.+.           .         +         .+|+++.|.|.+.+.  .|.| .
T Consensus       106 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~--~p~~~~  183 (252)
T 3bkj_L          106 GTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNF--YPKDIN  183 (252)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEE--BSSCCE
T ss_pred             CCEEEEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeE--eCCCcE
Confidence                11        279999987431           0         1         147899999999753  2544 6


Q ss_pred             EEEEeCCCeeeEEe-e-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        100 ESWISDQGEELFVD-M-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       100 i~W~k~~~~~l~~~-~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++|+||+ ..+... .     ....++.|..  ...|.|.+++.+|+ |.|+|.|.|..
T Consensus       184 v~W~k~g-~~~~~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~d~-g~Y~C~a~n~~  238 (252)
T 3bkj_L          184 VKWKIDG-SERQNGVLNSWTDQDSKDSTYSM--SSTLTLTKDEYERH-NSYTCEATHKT  238 (252)
T ss_dssp             EEEEETT-EEECSSEEEEECCCCTTTCCEEE--EEEEEEEHHHHHHC-CEEEEEEECTT
T ss_pred             EEEEECC-eecCCCeeeecCcccCCCCCEEE--EEEEEEcchhccCC-CeEEEEEEeCC
Confidence            9999997 454211 0     0001122211  12599999999999 99999999986

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=3.6e-15  Score=99.87  Aligned_cols=83  Identities=20%  Similarity=0.352  Sum_probs=66.0

Q ss_pred             EEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEe
Q psy12724         69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        69 ~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      ...+.+..+.+|+++.|.|.+.   +.|.|.++|+|++ ..+.     ....++.+..++.|.|.+++.+|+ |.|+|.|
T Consensus        12 ~~~p~~~~v~~G~~~~l~C~~~---g~p~p~v~W~~~~-~~~~-----~~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~a   81 (100)
T 2edj_A           12 LQGPANQTLAVDGTALLKCKAT---GDPLPVISWLKEG-FTFP-----GRDPRATIQEQGTLQIKNLRISDT-GTYTCVA   81 (100)
T ss_dssp             EECCCCEEEESSSEEEECCEEE---CSSCCEEEEEESS-SEES-----SSCSSCEECTTCCEEEESCCTTTC-CEEEEEE
T ss_pred             EeCcCCEEEcCCCcEEEEEEEE---EcCCCEEEEEECC-EECC-----CCCCCEEEcCCCEEEEccCCcccC-EEEEEEE
Confidence            3345567889999999999997   4588999999997 4542     135677788889999999999999 9999999


Q ss_pred             eecC---cceEEEeee
Q psy12724        149 KHRL---TGETRLSAT  161 (167)
Q Consensus       149 ~n~~---~~~~~l~~~  161 (167)
                      .|..   +..+.|.+.
T Consensus        82 ~n~~g~~~~~~~l~V~   97 (100)
T 2edj_A           82 TSSSGETSWSAVLDVT   97 (100)
T ss_dssp             ECSSCCCBCCEEEEEE
T ss_pred             EcCCCCEEEEEEEEEe
Confidence            9986   445555553

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.61  E-value=3.5e-15  Score=113.15  Aligned_cols=131  Identities=20%  Similarity=0.295  Sum_probs=88.1

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cce---eee-c-------CCc----------eE-------
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQ---YQI-D-------NQD----------FV-------   63 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~---~~~-~-------~~~----------~v-------   63 (167)
                      +...+.++.+.+|+++.|.|.+.+.+.   +.+.|+|++ +..   +.. +       ..+          .+       
T Consensus        27 v~~~p~~~~v~~G~~v~L~C~~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  103 (237)
T 3sob_L           27 MTQSPSSLSASVGDRVTITCRASQDVS---TAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP  103 (237)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EEeCCCeEEEeCCCcEEEEEecCCCCC---ceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence            556688899999999999999988753   479999843 111   000 0       011          01       


Q ss_pred             -EEeeeEEEecCe-----------EE------------------EeCCcEEEEeeeCCccCCc-ceeEEEEeCCCeeeEE
Q psy12724         64 -VSQSYTVNIMDE-----------HV------------------LKGNSAVLKCHIPSFVADY-VAVESWISDQGEELFV  112 (167)
Q Consensus        64 -~~g~y~c~~~~~-----------~v------------------~~G~~a~l~C~~~~~~~~p-~p~i~W~k~~~~~l~~  112 (167)
                       .+|.|.|.+.+.           .|                  .+|+++.|.|.+.+.  .| .|.++|+||+ ..+..
T Consensus       104 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~--~p~~~~v~W~k~g-~~~~~  180 (237)
T 3sob_L          104 EDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNF--YPREAKVQWKVDN-ALQSG  180 (237)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEE--BSSCCEEEEEETT-EECCS
T ss_pred             hhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEccc--CCCceEEEEEECC-CCCCC
Confidence             279999998430           11                  148899999999753  25 5899999997 45431


Q ss_pred             e----e--eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        113 D----M--TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       113 ~----~--~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .    .  ....++.|.+  ...|.|.++..+|+ |.|+|.|.|..
T Consensus       181 ~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~d~-g~Y~C~a~n~~  223 (237)
T 3sob_L          181 NSQESVTEQDSKDSTYSL--SSTLTLSKADYEKH-KVYACEVTHQG  223 (237)
T ss_dssp             SEEEEECCCCTTTCCEEE--EEEEEEEHHHHTTC-CEEEEEEECTT
T ss_pred             ceeecccccccCCCcEEE--EEEEEEcHHHccCC-CcEEEEEeeCC
Confidence            0    0  0112233333  23699999999999 99999999987

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.61  E-value=1.1e-14  Score=113.08  Aligned_cols=142  Identities=16%  Similarity=0.167  Sum_probs=91.9

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cc---eeee-c-----------CCc------------eE---
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GG---QYQI-D-----------NQD------------FV---   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~---~~~~-~-----------~~~------------~v---   63 (167)
                      .++..+.+.+|+++.|.|.+.+.+.+ .+.+.|+|++ +.   .+.. +           ..|            .+   
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~g~p~~-~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   83 (257)
T 1f3r_B            5 LESGPGLVRPSETLSLTCTVSGFSLT-SFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMN   83 (257)
T ss_dssp             EEECCSEECTTSEEEEEEEEESSCTT-TSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEE
T ss_pred             ECCCCccccCCceEEEEEEEecccCC-CccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEEC
Confidence            45667789999999999999887522 2479999862 11   1100 0           011            11   


Q ss_pred             -----EEeeeEEEecCe-------------------------------------------------EEEeCCcEEEEeee
Q psy12724         64 -----VSQSYTVNIMDE-------------------------------------------------HVLKGNSAVLKCHI   89 (167)
Q Consensus        64 -----~~g~y~c~~~~~-------------------------------------------------~v~~G~~a~l~C~~   89 (167)
                           .+|.|.|.+.+.                                                 .+.+|+++.|.|.+
T Consensus        84 ~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~  163 (257)
T 1f3r_B           84 SLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKG  163 (257)
T ss_dssp             SCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEEC
T ss_pred             CCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEE
Confidence                 279999986431                                                 12468999999999


Q ss_pred             CCccCCcceeEEEEe--CCCeeeEE--eee----ecCCceEEEcc---CCeEEEeecCcCCCCcceEEEeeecC---cce
Q psy12724         90 PSFVADYVAVESWIS--DQGEELFV--DMT----ESTDGKYLVLP---SGELHIRDVGPEDGYKSYQCRTKHRL---TGE  155 (167)
Q Consensus        90 ~~~~~~p~p~i~W~k--~~~~~l~~--~~~----~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~  155 (167)
                      .+   .|.|.++|+|  ++. .+..  ...    ....+||.+..   ...|.|.+++.+|+ |.|.|.|.|..   +..
T Consensus       164 ~~---~~~~~v~W~k~~~g~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~~~~~g~g  238 (257)
T 1f3r_B          164 SQ---NINNYLAWYQQKLGE-APKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDV-ATYFCYQYNNGYTFGAG  238 (257)
T ss_dssp             SS---CCBTCEEEEEECTTS-CCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGC-SEEEEEEESSSEEECCC
T ss_pred             CC---cCCCcEEEEEECCCC-CcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhC-EEEEEEEeCCCCeECCC
Confidence            74   4777899999  442 2210  000    01135676543   23799999999999 99999999963   444


Q ss_pred             EEEeeeC
Q psy12724        156 TRLSATK  162 (167)
Q Consensus       156 ~~l~~~~  162 (167)
                      ++|.+.+
T Consensus       239 t~l~V~~  245 (257)
T 1f3r_B          239 TKLELKA  245 (257)
T ss_dssp             CEECCSS
T ss_pred             EEEEEeC
Confidence            5555544

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.61  E-value=2.7e-15  Score=113.13  Aligned_cols=128  Identities=15%  Similarity=0.264  Sum_probs=85.6

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCc----eee--------------------------ecCCceE--
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGG----QYQ--------------------------IDNQDFV--   63 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~----~~~--------------------------~~~~~~v--   63 (167)
                      .|+++.+.+|+++.|.|.+.+.+.  .+.+.|.|++..    .+.                          .++.+.+  
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~   83 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHD--HYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAE   83 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCS--EEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESS
T ss_pred             CCCcEEEEcCCCEEEecccCCCCC--ceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcc
Confidence            567899999999999999988764  357999986443    111                          1111111  


Q ss_pred             ----EEeeeEEEecC-----------------------------eEEEeCCcE-EEEeee-CCccCCcceeEEEEeCCCe
Q psy12724         64 ----VSQSYTVNIMD-----------------------------EHVLKGNSA-VLKCHI-PSFVADYVAVESWISDQGE  108 (167)
Q Consensus        64 ----~~g~y~c~~~~-----------------------------~~v~~G~~a-~l~C~~-~~~~~~p~p~i~W~k~~~~  108 (167)
                          .+|.|+|.+.+                             ..+.+|+++ .|.|.+ .   +.|.|.++|+|++ .
T Consensus        84 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~---~~p~p~i~W~~~~-~  159 (231)
T 2pet_A           84 AQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRN---GNPAPKITWYRNG-Q  159 (231)
T ss_dssp             CCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEE---EBSCCEEEEEETT-E
T ss_pred             cCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeEC---cccCCEEEEEECC-c
Confidence                27999998632                             012368877 999999 5   4589999999997 4


Q ss_pred             eeEEeeeecCCceEEEcc------C------CeEEEeecCcCCCCcceEEEeeecC
Q psy12724        109 ELFVDMTESTDGKYLVLP------S------GELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       109 ~l~~~~~~~~~~r~~~~~------~------g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+....  ....++.+..      +      +.|.|......|+ |.|+|.|.|..
T Consensus       160 ~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~-g~Y~C~a~n~~  212 (231)
T 2pet_A          160 RLEVPV--EMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRD-ASFHCAAHYSL  212 (231)
T ss_dssp             ECCCCS--SCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGG-CEEEEEEEEEC
T ss_pred             cCcccc--ccccceeecceeEecCCCeEEEEEEEEEecchhhCC-ceEEEEEEcCC
Confidence            553210  0112443332      1      4688886666668 99999999953

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.61  E-value=1.1e-14  Score=112.64  Aligned_cols=145  Identities=17%  Similarity=0.274  Sum_probs=94.0

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cce--ee----ecC---------Cc------------eE---
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQ--YQ----IDN---------QD------------FV---   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~--~~----~~~---------~~------------~v---   63 (167)
                      .++.++.|.+|+++.|.|.+.+.+.+ .+.+.|+|.+ +..  +.    .++         .|            .+   
T Consensus        13 ~~p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   91 (257)
T 3gkz_A           13 QESGPSLVKPSQTLSLTCSVTGDSVT-SGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLK   91 (257)
T ss_dssp             EEECCSEECTTCCEEEEEEEEESCCS-SCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             ECCCCeEEcCCCcEEEEEEEEccccc-ceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEEC
Confidence            46677889999999999999875422 2579999843 111  11    000         01            11   


Q ss_pred             -----EEeeeEEEecC-------------------------------------------eEEEeCCcEEEEeeeCCccCC
Q psy12724         64 -----VSQSYTVNIMD-------------------------------------------EHVLKGNSAVLKCHIPSFVAD   95 (167)
Q Consensus        64 -----~~g~y~c~~~~-------------------------------------------~~v~~G~~a~l~C~~~~~~~~   95 (167)
                           .+|.|.|.+.+                                           ..+.+|+++.|.|.+.+   .
T Consensus        92 ~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~---~  168 (257)
T 3gkz_A           92 SVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASS---S  168 (257)
T ss_dssp             SCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESS---C
T ss_pred             CCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEcc---C
Confidence                 27999998733                                           12457999999999985   3


Q ss_pred             cce-eEEEEeCC-CeeeEEee------eecCCceEEEccC---CeEEEeecCcCCCCcceEEEeeecC----cceEEEee
Q psy12724         96 YVA-VESWISDQ-GEELFVDM------TESTDGKYLVLPS---GELHIRDVGPEDGYKSYQCRTKHRL----TGETRLSA  160 (167)
Q Consensus        96 p~p-~i~W~k~~-~~~l~~~~------~~~~~~r~~~~~~---g~L~I~~v~~~D~~G~Y~C~a~n~~----~~~~~l~~  160 (167)
                      |.| .+.|+|++ +..+....      .....+|+.+..+   ..|.|.+++.+|+ |.|.|.|.|..    +.-++|.+
T Consensus       169 ~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~~~~fg~gt~l~v  247 (257)
T 3gkz_A          169 VSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDA-ASYFCHQWSSFPFTFGSGTKLEI  247 (257)
T ss_dssp             CCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-EEEEEEECSSSSCEECCCEEEEE
T ss_pred             ccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHC-EEEEEEEccCCceEEcCCEEEEE
Confidence            666 89999842 11211000      0011256655432   2599999999999 99999999843    66778887


Q ss_pred             eCCe
Q psy12724        161 TKGR  164 (167)
Q Consensus       161 ~~~~  164 (167)
                      .+..
T Consensus       248 ~~~~  251 (257)
T 3gkz_A          248 KRAP  251 (257)
T ss_dssp             CCC-
T ss_pred             EeCC
Confidence            6653

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.61  E-value=3.1e-15  Score=111.92  Aligned_cols=127  Identities=19%  Similarity=0.219  Sum_probs=86.9

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCC----CCcceeeEEeeCCCc-----eeeecC----------Cc------------eE
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFV----SDHLDVVSWADTDGG-----QYQIDN----------QD------------FV   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~----~~~~~~i~W~k~~~~-----~~~~~~----------~~------------~v   63 (167)
                      ..|.++.+.+|+++.|.|.+.+..    ....+.+.|+|++..     .+..+.          .|            .+
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL   84 (214)
T 2zg1_A            5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSL   84 (214)
T ss_dssp             ECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCE
T ss_pred             eCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEE
Confidence            347789999999999999987431    012367999998542     111000          01            11


Q ss_pred             --------EEeeeEEEecCe-----------------------------EEEeCCcEEEEeeeCCc-cCCcceeEEEEeC
Q psy12724         64 --------VSQSYTVNIMDE-----------------------------HVLKGNSAVLKCHIPSF-VADYVAVESWISD  105 (167)
Q Consensus        64 --------~~g~y~c~~~~~-----------------------------~v~~G~~a~l~C~~~~~-~~~p~p~i~W~k~  105 (167)
                              .+|.|.|.+.+.                             .+.+|+++.|.|.+.+. .+.|.|.++|+|+
T Consensus        85 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~  164 (214)
T 2zg1_A           85 SIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGN  164 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--CCCCTTCCEEEEEECTTCCSCSSCCEEEEESS
T ss_pred             EEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCccccCCCeEEEEEEeccCCCCCCCceEEEeCC
Confidence                    279999976320                             11359999999999753 2358899999999


Q ss_pred             CCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        106 QGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       106 ~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +. .+.       ..+.  ..++.|.|.++..+|+ |.|+|.|.|..
T Consensus       165 ~~-~~~-------~~~~--~~~~~L~i~~~~~~~~-g~Y~C~a~n~~  200 (214)
T 2zg1_A          165 AL-SPL-------DPET--TRSSELTLTPRPEDHG-TNLTCQMKRQG  200 (214)
T ss_dssp             TT-SSS-------CSSC--CCSSEEEECCCTTCCS-CEEEEEEECC-
T ss_pred             CC-ccC-------CCCc--eeEEEEEEecccHHcC-cEEEEEEEeCC
Confidence            74 321       1222  4567899999999998 99999999974

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.60  E-value=3.3e-15  Score=118.53  Aligned_cols=129  Identities=19%  Similarity=0.236  Sum_probs=89.4

Q ss_pred             EEeEEEEEeC---CcEEEEee-cCCCCCCcceeeEEeeCCCcee-ee-----cCCce---E---------EEeeeEEEec
Q psy12724         16 QVYDVFVIKG---NAAVFKCN-LPSFVSDHLDVVSWADTDGGQY-QI-----DNQDF---V---------VSQSYTVNIM   73 (167)
Q Consensus        16 ~~~~~~v~~G---~~~~l~C~-a~~~~~~~~~~i~W~k~~~~~~-~~-----~~~~~---v---------~~g~y~c~~~   73 (167)
                      .+.+..+.+|   +++.|.|. +.+.|.   +.++|+|+..... ..     ++...   .         ..|.|+|.+.
T Consensus       138 ~~~~~~~~~g~~~~~~~l~C~~~~~~p~---~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  214 (331)
T 3u83_A          138 TQAVLRAKKGQDDKVLVATCTSANGKPP---SVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVN  214 (331)
T ss_dssp             CSSCEEECTTCCCCEEEEEEEEEEEBSC---CEEEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEE
T ss_pred             CCCceeecCCCccceEEEEEEecCCcCC---ceEEEEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEe
Confidence            3445667888   78999998 666664   4799999632211 11     11111   1         1599999874


Q ss_pred             C--------------------------eEEEeCCcEEEEeeeCCccCCccee-EEEEeCCCeeeEEeeeecCCceEEEcc
Q psy12724         74 D--------------------------EHVLKGNSAVLKCHIPSFVADYVAV-ESWISDQGEELFVDMTESTDGKYLVLP  126 (167)
Q Consensus        74 ~--------------------------~~v~~G~~a~l~C~~~~~~~~p~p~-i~W~k~~~~~l~~~~~~~~~~r~~~~~  126 (167)
                      +                          ..+.+|+++.|.|.+.   ++|.|. ++|+|+++ .+.      ..  . ...
T Consensus       215 n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~---g~p~p~~i~W~~~~~-~~~------~~--~-~~~  281 (331)
T 3u83_A          215 YHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKAD---ANPPATEYHWTTLNG-SLP------KG--V-EAQ  281 (331)
T ss_dssp             ETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEE---EESCCCEEEEEETTB-SCC------TT--E-EEE
T ss_pred             cCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCc---CCCCCCEEEEEECCC-ccc------cc--c-eec
Confidence            3                          1234699999999997   458887 99999973 442      12  2 235


Q ss_pred             CCeEEEe-ecCcCCCCcceEEEeeecC---cceEEEeee
Q psy12724        127 SGELHIR-DVGPEDGYKSYQCRTKHRL---TGETRLSAT  161 (167)
Q Consensus       127 ~g~L~I~-~v~~~D~~G~Y~C~a~n~~---~~~~~l~~~  161 (167)
                      ++.|.|. +++.+|+ |.|+|.|.|..   +..+.|.+.
T Consensus       282 ~~~L~i~~~v~~~d~-G~Y~C~a~N~~G~~~~~~~l~V~  319 (331)
T 3u83_A          282 NRTLFFKGPINYSLA-GTYICEATNPIGTRSGQVEVNIT  319 (331)
T ss_dssp             TTEEEECSCCCGGGC-EEEEEEEEETTEEEEEEEEECCB
T ss_pred             CcEEEEeCCCccccC-eEEEEEEEeccccceEEEEEEEe
Confidence            7899999 9999998 99999999987   344555554

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.60  E-value=8.3e-15  Score=114.99  Aligned_cols=121  Identities=14%  Similarity=0.174  Sum_probs=86.2

Q ss_pred             EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec--------CCc-eE--------EEeeeEEEecC-------
Q psy12724         19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID--------NQD-FV--------VSQSYTVNIMD-------   74 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~--------~~~-~v--------~~g~y~c~~~~-------   74 (167)
                      .+.|.+|+++.|.|......+  .+.+.|+|++. .+..+        +.. .+        ..|.|+|.+.+       
T Consensus        10 ~~~v~eg~~v~l~~~~~~~~p--~~~v~W~k~~~-~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s   86 (312)
T 2y23_A           10 VVNVDDDGVISLNFECDKMTP--KSEFSWSKDYV-STEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASS   86 (312)
T ss_dssp             EEEECTTCCEEEEEECSSCCT--TCCEEEEETTE-ECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCEE
T ss_pred             eEEEecCCeEEEEEEEeCCCC--CcEEEEEECCE-ECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEEE
Confidence            467889999999999873222  35899999853 33211        111 11        27999998743       


Q ss_pred             ------------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE
Q psy12724         75 ------------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV  124 (167)
Q Consensus        75 ------------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~  124 (167)
                                                    ..+.+|+++.|.|.+.+  +.|.|.++|+|++ ..+.      ...++.+
T Consensus        87 ~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~--~~p~~~v~W~~~~-~~i~------~~~~~~~  157 (312)
T 2y23_A           87 YLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEK--LSGNAKVNYIFNE-KEIF------EGPKYKM  157 (312)
T ss_dssp             EEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESC--CCSSCEEEEEETT-EEEC------SSSSCEE
T ss_pred             EEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEe--CCCCCEEEEEECC-EECe------eCCcEEE
Confidence                                          24567999999999973  3488999999997 5553      3455555


Q ss_pred             ccC---Ce--EEEeecCcCCCCcceEEEeeecC
Q psy12724        125 LPS---GE--LHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       125 ~~~---g~--L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..+   +.  |.|.+++.+|+ |.|+|.|.|..
T Consensus       158 ~~~~~~~~~~L~i~~~~~~d~-G~Y~C~~~~~~  189 (312)
T 2y23_A          158 HIDRNTGIIEMFMEKLQDEDE-GTYTFQLQDGK  189 (312)
T ss_dssp             EEETTTTEEEEEESCCCGGGC-EEEEEEEESSS
T ss_pred             EEccCCCEEEEEEccCCcccC-EeEEEEEEeCC
Confidence            432   32  99999999999 99999998753

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.60  E-value=5.7e-17  Score=142.10  Aligned_cols=133  Identities=18%  Similarity=0.224  Sum_probs=0.0

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee-------------------------cCC-----ce
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI-------------------------DNQ-----DF   62 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~-------------------------~~~-----~~   62 (167)
                      +...+. ..+.+|+++.|.|.+.+.+.   +.+.|+|++......                         ++.     ..
T Consensus       553 i~~~p~-~~~~~G~~v~l~C~~~~~p~---~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  628 (772)
T 3v2a_R          553 ITLQPD-MQPTEQESVSLWCTADRSTF---ENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIME  628 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeccCC-cccccCCceEEEEeccCCCC---CCcEEEEcCCcccccccCcccccccccccceeeccceeeecCCCceEEEE
Confidence            333443 45889999999999998764   479999986532210                         111     00


Q ss_pred             ------EEEeeeEEEecC-----------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC
Q psy12724         63 ------VVSQSYTVNIMD-----------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQG  107 (167)
Q Consensus        63 ------v~~g~y~c~~~~-----------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~  107 (167)
                            -.+|.|+|.+.+                             ..+.+|+++.|.|.+.   |+|.|.++|+||+ 
T Consensus       629 i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~---g~P~p~v~W~k~g-  704 (772)
T 3v2a_R          629 LKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTAS---GNPPPQIMWFKDN-  704 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEeecCCCceEEeCCCCEEEEEEeC---ccCCCeEEEEECC-
Confidence                  137999998744                             2346799999999998   4599999999997 


Q ss_pred             eeeEEeeeecCCceEEEcc-CCeEEEeecCcCCCCcceEEEeeecC---cceEEEee
Q psy12724        108 EELFVDMTESTDGKYLVLP-SGELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       108 ~~l~~~~~~~~~~r~~~~~-~g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                      ..+..      +.++.+.. ++.|.|.+++.+|+ |.|+|.|.|..   ...+.|.+
T Consensus       705 ~~l~~------~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G~~~~~~~l~V  754 (772)
T 3v2a_R          705 ETLVE------DSGIVLKDGNRNLTIRRVRKEDE-GLYTCQACSVLGCAKVEAFFII  754 (772)
T ss_dssp             ---------------------------------------------------------
T ss_pred             eECcC------CCCeEEcCCCcEEEECcCCHHHC-EEEEEEEEeCCcceeEEEEEEE
Confidence            45532      33454443 67899999999999 99999999977   33455555

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.60  E-value=3.2e-15  Score=111.15  Aligned_cols=125  Identities=17%  Similarity=0.162  Sum_probs=82.5

Q ss_pred             eEEEEEeCCcEEEEeecCCCC-CCcceeeEEeeCCCceee--------------------ecCCceE--------EEeee
Q psy12724         18 YDVFVIKGNAAVFKCNLPSFV-SDHLDVVSWADTDGGQYQ--------------------IDNQDFV--------VSQSY   68 (167)
Q Consensus        18 ~~~~v~~G~~~~l~C~a~~~~-~~~~~~i~W~k~~~~~~~--------------------~~~~~~v--------~~g~y   68 (167)
                      ..+.|.+|+++.|.|.+.+.. +.+.+.+.|.|++. .+.                    ..+...+        .+|.|
T Consensus         2 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~-~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y   80 (201)
T 1dr9_A            2 IHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKK-MVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTY   80 (201)
T ss_dssp             CEEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTE-EEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEE
T ss_pred             ceEEEEeCCCEEEecccCCCcccccccEEEEEeCCc-EEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEE
Confidence            357899999999999997542 11235799999854 331                    0011111        27999


Q ss_pred             EEEecCe-----------E----E--------------EeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCC
Q psy12724         69 TVNIMDE-----------H----V--------------LKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTD  119 (167)
Q Consensus        69 ~c~~~~~-----------~----v--------------~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~  119 (167)
                      +|.+.+.           .    |              ..|+.+.|.|.+.+  +.|.|.++|+||+ ..+..     ..
T Consensus        81 ~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~~~l~C~~~~--g~P~p~i~W~k~g-~~l~~-----~~  152 (201)
T 1dr9_A           81 ECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSG--GFPEPHLSWLENG-EELNA-----IN  152 (201)
T ss_dssp             EEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEECSSTTEEEEEEEEEE--ESSCEEEEEEESS-CEECC-----SE
T ss_pred             EEEEEcCCCCccccccccEEEEEEcCCCCCCceEeccCCCCCeEEEEEecCC--ccCCCEEEEEECC-EECcc-----cc
Confidence            9987430           0    0              24778999999952  3599999999997 45531     22


Q ss_pred             ceEEEccC-CeE---EEeecCcCCCCcceEEEeeecC
Q psy12724        120 GKYLVLPS-GEL---HIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       120 ~r~~~~~~-g~L---~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .++....+ +.+   .+..++.+|+ |.|+|.|.|..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~v~~~d~-g~Y~C~a~n~~  188 (201)
T 1dr9_A          153 TTVSQDPETELYAVSSKLDFNMTTN-HSFMCLIKYGH  188 (201)
T ss_dssp             EEEEECTTTCCEEEEEEEEEETTSC-EEEEEEEEETT
T ss_pred             ceEEecCCCcEEEEEEEEEEEecCC-CEEEEEEecCc
Confidence            34444444 332   2356678998 99999999987

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.60  E-value=5.5e-15  Score=98.54  Aligned_cols=84  Identities=20%  Similarity=0.438  Sum_probs=64.0

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcce
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSY  144 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y  144 (167)
                      +...+.+..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+..     ...++.+..++   .|.|.+++.+|+ |.|
T Consensus         8 ~~~~~~~~~v~~G~~v~l~C~~~g---~p~p~v~W~k~~-~~~~~-----~~~~~~~~~~~~~~~L~i~~~~~~D~-G~Y   77 (99)
T 1u2h_A            8 FKVSLMDQSVREGQDVIMSIRVQG---EPKPVVSWLRNR-QPVRP-----DQRRFAEEAEGGLCRLRILAAERGDA-GFY   77 (99)
T ss_dssp             EEECCCCEEEETTCCEEEEEEEEE---ESCCEEEEEETT-EECCC-----BTTEEEEECGGGEEEEEESSCCGGGC-EEE
T ss_pred             EEEcCCceEecCCCEEEEEEEEEE---cCCCEEEEEECC-EECCC-----CCCEEEEECCCCEEEEEEccCCcCCC-EEE
Confidence            444456678899999999999974   588999999997 45532     34556655554   699999999999 999


Q ss_pred             EEEeeecC---cceEEEeee
Q psy12724        145 QCRTKHRL---TGETRLSAT  161 (167)
Q Consensus       145 ~C~a~n~~---~~~~~l~~~  161 (167)
                      +|.|.|..   +..+.|.+.
T Consensus        78 ~C~a~N~~g~~~~~~~l~V~   97 (99)
T 1u2h_A           78 TCKAVNEYGARQCEARLEVR   97 (99)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEECCCceeEEEEEEEE
Confidence            99999987   334455553

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.60  E-value=1.1e-14  Score=129.06  Aligned_cols=126  Identities=17%  Similarity=0.324  Sum_probs=97.3

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec------------CCc--eE--------EEeeeE
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID------------NQD--FV--------VSQSYT   69 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~------------~~~--~v--------~~g~y~   69 (167)
                      .+...+.+..+.+|+++.|.|.+.+.|.+   .+.|.+++. .+..+            +..  .+        ..|.|+
T Consensus       431 ~i~~~~~~~~v~~G~~v~L~C~~~g~p~p---~v~W~~~g~-~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  506 (816)
T 3dmk_A          431 VIRQAFQEETMEPGPSVFLKCVAGGNPTP---EISWELDGK-KIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYK  506 (816)
T ss_dssp             EEEEECCCEEECSSSCEEEEEEEECSSCC---EEEEEETTE-ECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEE
T ss_pred             ceEecCcceEEcCCCCEEEEEEEecCCCC---EEEEEECCE-ECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEE
Confidence            35566677889999999999999987754   799999853 33221            110  01        169999


Q ss_pred             EEecC------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc
Q psy12724         70 VNIMD------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL  125 (167)
Q Consensus        70 c~~~~------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~  125 (167)
                      |.+.+                        ..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.      ...++.+.
T Consensus       507 C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g---~p~~~i~W~k~~-~~l~------~~~~~~~~  576 (816)
T 3dmk_A          507 CIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAG---YPIDSIVWERDN-RALP------INRKQKVF  576 (816)
T ss_dssp             EEEEETTEEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEEC---SSEEEEEEEETT-EESC------CSTTEEEC
T ss_pred             EEEEECCCeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecC---CCCCEEEEEECC-eEcc------cCCceEEe
Confidence            98743                        34568999999999974   588999999997 4542      35677778


Q ss_pred             cCCeEEEeecC-cCCCCcceEEEeeecC
Q psy12724        126 PSGELHIRDVG-PEDGYKSYQCRTKHRL  152 (167)
Q Consensus       126 ~~g~L~I~~v~-~~D~~G~Y~C~a~n~~  152 (167)
                      .+|.|.|.++. .+|+ |.|+|.|.|..
T Consensus       577 ~~~~l~i~~v~~~~d~-G~Y~C~a~n~~  603 (816)
T 3dmk_A          577 PNGTLIIENVERNSDQ-ATYTCVAKNQE  603 (816)
T ss_dssp             TTSEEEESSCCHHHHC-EEEEEEEEESS
T ss_pred             cCCeEEEEecCccccC-EEEEEEEEECC
Confidence            89999999998 6999 99999999986

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.60  E-value=1.1e-14  Score=112.88  Aligned_cols=146  Identities=20%  Similarity=0.267  Sum_probs=86.0

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC---Cce-ee-ec----------C---Cc-----------
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD---GGQ-YQ-ID----------N---QD-----------   61 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~---~~~-~~-~~----------~---~~-----------   61 (167)
                      +.++..+.++.+.+|+++.|.|.+.+.+.   +.+.|+|.+   +.. +. .+          .   .+           
T Consensus         3 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~---~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   79 (259)
T 3omz_A            3 SNLEGRTKSVIRQTGSSAEITCDLAEGST---GYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNL   79 (259)
T ss_dssp             --------CEEEETTCCEEEECCC--------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCC
T ss_pred             cccccCCceeEecCCCcEEEEEEEccCCC---cEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeE
Confidence            45677888999999999999999988764   479999831   111 10 01          0   00           


Q ss_pred             eE--------EEeeeEEEecC---------------------------------------------eEEEeCCcEEEEee
Q psy12724         62 FV--------VSQSYTVNIMD---------------------------------------------EHVLKGNSAVLKCH   88 (167)
Q Consensus        62 ~v--------~~g~y~c~~~~---------------------------------------------~~v~~G~~a~l~C~   88 (167)
                      .+        .+|.|.|.+.+                                             ..+.+|++|.|.|.
T Consensus        80 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~  159 (259)
T 3omz_A           80 RMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCL  159 (259)
T ss_dssp             EEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCE
T ss_pred             EEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEE
Confidence            11        17999997632                                             23467999999998


Q ss_pred             eCCccCCcceeEEEEeCCC-eeeEEeee------ecCCceEEEcc-----CCeEEEeecCcCCCCcceEEEeeecC----
Q psy12724         89 IPSFVADYVAVESWISDQG-EELFVDMT------ESTDGKYLVLP-----SGELHIRDVGPEDGYKSYQCRTKHRL----  152 (167)
Q Consensus        89 ~~~~~~~p~p~i~W~k~~~-~~l~~~~~------~~~~~r~~~~~-----~g~L~I~~v~~~D~~G~Y~C~a~n~~----  152 (167)
                      +.+  ..|.+.+.|+|++. ..+.....      ....+|+.+..     +..|.|.+++.+|+ |.|.|.+.+..    
T Consensus       160 ~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~~~~~  236 (259)
T 3omz_A          160 YET--SWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDS-AKYFCALGESLTRAD  236 (259)
T ss_dssp             EEC--CCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGC-SEEEEEEESCSSTTC
T ss_pred             CCC--ccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHC-EEEEEEEeCccCCCC
Confidence            863  12678999998531 11110000      01135777653     23599999999999 99999997531    


Q ss_pred             ----cceEEEeeeC
Q psy12724        153 ----TGETRLSATK  162 (167)
Q Consensus       153 ----~~~~~l~~~~  162 (167)
                          ..-|+|.+.+
T Consensus       237 ~~~fg~GT~l~v~~  250 (259)
T 3omz_A          237 KLIFGKGTRVTVEP  250 (259)
T ss_dssp             CCEECCCEEEEEEC
T ss_pred             ceEECCCCEEEEee
Confidence                4455666644

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.60  E-value=9e-16  Score=127.13  Aligned_cols=123  Identities=13%  Similarity=0.142  Sum_probs=88.0

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceee-----EEeeCCCceeeecCCce--E-----EEeeeEEEecC------
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVV-----SWADTDGGQYQIDNQDF--V-----VSQSYTVNIMD------   74 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i-----~W~k~~~~~~~~~~~~~--v-----~~g~y~c~~~~------   74 (167)
                      +.++|++..|.+|+++.|.|.+.+ +.+   .+     .|.|++.. +.......  +     ..| |+|.+.+      
T Consensus         2 i~~~P~~~~v~~G~~v~L~C~~~g-p~p---~~~~~~~~w~k~~~~-~~~~~~~~l~i~~v~~d~g-Y~C~a~~~~~~~~   75 (450)
T 1z7z_I            2 TSVSPSKVILPRGGSVLVTCSTSC-DQP---MLLGIETPLPKKELL-LPGNNRKVYELSNVQEDSQ-PMCYSNCPDGQST   75 (450)
T ss_dssp             CEEESSEEEEETTEEEEEEEECCS-SCC---CEEEECSSSCEEECC-SSTTTEEEEEEEEECSCBC-CEEEEEETTEEEE
T ss_pred             cccCCCceEEecCCcEEEEEEccC-CCc---ccccccceeeecceE-ecCCCceEEEEEecccCCe-eEEEEeCCCCcce
Confidence            467889999999999999999998 543   56     89988431 11101010  1     256 9997621      


Q ss_pred             --------------------eEEEeCCcEEEEeeeCCccCCcce---eEEEEeCCCeeeEEeeeecCCceEEEccCCeEE
Q psy12724         75 --------------------EHVLKGNSAVLKCHIPSFVADYVA---VESWISDQGEELFVDMTESTDGKYLVLPSGELH  131 (167)
Q Consensus        75 --------------------~~v~~G~~a~l~C~~~~~~~~p~p---~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~  131 (167)
                                          ..+.+|+++.|.|.+.+   .|.|   .++|+||+ ..+...      .+.....++.|.
T Consensus        76 ~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g---~~~~~~~~v~W~k~g-~~l~~~------~~~~~~~~~~L~  145 (450)
T 1z7z_I           76 AKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEG---GAPRANLTVVLLRGE-KELKRE------PAVGEPAEVTTT  145 (450)
T ss_dssp             EECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEEC---CBCGGGEEEEEEETT-EEEEEE------ECCTTTEEEEEE
T ss_pred             eEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecC---CCCCcCcEEEEeeCC-EEeecc------cccccccceEEE
Confidence                                34568999999999985   3666   89999997 566432      111112245899


Q ss_pred             EeecCcCCCCcceEEEeeecC
Q psy12724        132 IRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       132 I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |.+++.+|+ |.|+|.|.|..
T Consensus       146 i~~~~~~d~-G~Y~C~a~n~~  165 (450)
T 1z7z_I          146 VLVRRDHHG-ANFSCRTELDL  165 (450)
T ss_dssp             EECCSSCSS-CEEEEEEEEEC
T ss_pred             EEeeccccC-ceEEEEEEccc
Confidence            999999999 99999999985

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.60  E-value=4.5e-15  Score=114.32  Aligned_cols=137  Identities=18%  Similarity=0.229  Sum_probs=89.8

Q ss_pred             eeceeeEEeEEEEEeCCcEEEEeecCCCCCC--cceeeEEeeCC-Cceee---------ec--CCc----------eE--
Q psy12724         10 SQYYEAQVYDVFVIKGNAAVFKCNLPSFVSD--HLDVVSWADTD-GGQYQ---------ID--NQD----------FV--   63 (167)
Q Consensus        10 ~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~--~~~~i~W~k~~-~~~~~---------~~--~~~----------~v--   63 (167)
                      .+.+...+.++.+.+|+++.|.|.+.+.+..  ..+.+.|+|++ +..+.         ..  ..|          .+  
T Consensus        38 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I  117 (254)
T 2c1o_A           38 ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKI  117 (254)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEE
Confidence            4456677889999999999999999887620  01479999853 32110         00  011          11  


Q ss_pred             ------EEeeeEEEecCe----------------------EE-------EeCCcEEEEeeeCCccCCcc-eeEEEEeCCC
Q psy12724         64 ------VSQSYTVNIMDE----------------------HV-------LKGNSAVLKCHIPSFVADYV-AVESWISDQG  107 (167)
Q Consensus        64 ------~~g~y~c~~~~~----------------------~v-------~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~  107 (167)
                            .+|.|.|.+.+.                      .+       ..|+++.|.|.+.+.  .|. +.++|+||+ 
T Consensus       118 ~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~--~p~~~~v~W~k~g-  194 (254)
T 2c1o_A          118 SRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNF--YPKDINVKWKIDG-  194 (254)
T ss_dssp             SSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEE--BSSCCEEEEEESS-
T ss_pred             CcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecc--cCCCcEEEEEECC-
Confidence                  169999987431                      01       137899999999753  243 468999997 


Q ss_pred             eeeEEe-e-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        108 EELFVD-M-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       108 ~~l~~~-~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..+... .     ....++.|..  .+.|.|.+++.+|+ |.|+|.|.|..
T Consensus       195 ~~l~~~~~~~~~~~~~~~g~~~~--~~~L~i~~~~~~d~-G~Y~C~a~n~~  242 (254)
T 2c1o_A          195 SERQNGVLNSWTDQDSKDSTYSM--SSTLTLTKDEYERH-NSYTCEATHKT  242 (254)
T ss_dssp             SEECTTEEEEECCCCTTTCCEEE--EEEEEEEHHHHHTC-CEEEEEEECTT
T ss_pred             CcccCcceeccccccCCCCcEEE--EEEEEeccccccCC-CeEEEEEEcCC
Confidence            454311 0     0011223322  24799999999999 99999999986

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.59  E-value=5.4e-15  Score=110.68  Aligned_cols=132  Identities=17%  Similarity=0.259  Sum_probs=86.4

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC---Cce-eee-c-------CCc----------eE-------
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD---GGQ-YQI-D-------NQD----------FV-------   63 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~---~~~-~~~-~-------~~~----------~v-------   63 (167)
                      +...+.++.+.+|+++.|.|.+.+.+.   +.+.|+|.+   ... +.. +       ..|          .+       
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   80 (213)
T 3r06_A            4 MTQSPSSLPASLGDRVTINCQASQDIS---NYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLES   80 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCT---TCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             eEeCCCEEEecCCCcEEEEEEeCCCcC---ceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCc
Confidence            455678899999999999999998853   479999842   111 000 0       011          11       


Q ss_pred             -EEeeeEEEecCe-----------EE------------------EeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEe
Q psy12724         64 -VSQSYTVNIMDE-----------HV------------------LKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVD  113 (167)
Q Consensus        64 -~~g~y~c~~~~~-----------~v------------------~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~  113 (167)
                       .+|.|.|.+.+.           .|                  ..|+++.|.|.+.+. ..|.+.++|+||+ ..+.+.
T Consensus        81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~-~p~~~~v~W~k~g-~~l~~~  158 (213)
T 3r06_A           81 EDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNF-YPKDINVKWKVDG-SEKRDG  158 (213)
T ss_dssp             GGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEE-BSSCEEEEEEETT-EEECTT
T ss_pred             ccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeee-cCCceEEEEEECC-cccCCc
Confidence             279999998431           11                  147789999999754 1124589999997 555310


Q ss_pred             ---e---eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        114 ---M---TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       114 ---~---~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                         .   ....++.|.+.  ..|.|.....+|+ |.|+|.|.|..
T Consensus       159 ~~~~~~~~~~~~g~~~~~--s~l~i~~~~~~d~-g~YtC~v~n~~  200 (213)
T 3r06_A          159 VLQSVTDQDSKDSTYSLS--STLSLTKADYERH-NLYTCEVTHKT  200 (213)
T ss_dssp             EEEEECCCCTTTCCEEEE--EEEEEEHHHHHTC-CEEEEEEEETT
T ss_pred             eEeccCceeCCCCcEEEE--EEEEeCHHHhccC-CeEEEEEEecc
Confidence               0   00112223221  3688999999998 99999999986

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.59  E-value=8.2e-15  Score=123.83  Aligned_cols=129  Identities=18%  Similarity=0.224  Sum_probs=93.5

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE--------EEeeeEEEecC------------
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV--------VSQSYTVNIMD------------   74 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v--------~~g~y~c~~~~------------   74 (167)
                      ..+.+..+.+|+++.|.|.+.+       .+.|+|++...-.......+        ..|.|+|.+.+            
T Consensus        41 ~~~~~~~v~~G~~v~l~C~~~~-------~v~W~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ng~~~~~~l~V~~  113 (524)
T 2ec8_A           41 PGKSDLIVRVGDEIRLLCTDPG-------FVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRD  113 (524)
T ss_dssp             SCCSEEECCTTSCEEEEEECTT-------EEEEEEESSSCCEEECSSEEEESSCCSTTCEEEEEEETTSCEEEEEEECCC
T ss_pred             CCCceEEEeCCCeEEEEEeCCc-------eEEEcCCCccccccCccceEEEcccchhhCEEEEEeecCCcceEEEEEECC
Confidence            4556788999999999999986       49999987632111111111        27999998733            


Q ss_pred             ----------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCc-c
Q psy12724         75 ----------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYK-S  143 (167)
Q Consensus        75 ----------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G-~  143 (167)
                                ..+.+|+++.|.|.+.+   .|.|.++|+|.++..+.      .+.++.+..++.|.|.+++.+|+ | .
T Consensus       114 p~~~~~~~~~~~v~~G~~v~l~C~~~~---~~~~~v~W~~~~g~~l~------~~~~~~~~~~~~L~i~~~~~~d~-G~~  183 (524)
T 2ec8_A          114 PAKLFLVDRSLYGKEDNDTLVRCPLTD---PEVTNYSLKGCQGKPLP------KDLRFIPDPKAGIMIKSVKRAYH-RLC  183 (524)
T ss_dssp             SSCSBCCCCCCCEETTSCEEECCCBSC---CCCSCEEEECSSSCCCC------SSCEEEEETTTEEEEESCCGGGT-TCE
T ss_pred             CCcccccccceEEEcCCeEEEECcCCC---CccceEEEEccCCcCcC------CCCceeECCCccEEEeccchhhC-Cce
Confidence                      34578999999999974   35689999984445552      36678888889999999999999 9 9


Q ss_pred             eEEEeeecC----cceEEEee
Q psy12724        144 YQCRTKHRL----TGETRLSA  160 (167)
Q Consensus       144 Y~C~a~n~~----~~~~~l~~  160 (167)
                      |+|.|.|..    +..+.|.+
T Consensus       184 Y~C~a~n~~~~~~s~~~~l~V  204 (524)
T 2ec8_A          184 LHCSVDQEGKSVLSEKFILKV  204 (524)
T ss_dssp             EEEEEC----CCCCCCEECCE
T ss_pred             EEEEEEECCceEEEEEEEEEE
Confidence            999999875    22455554

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.59  E-value=7.2e-15  Score=98.75  Aligned_cols=85  Identities=19%  Similarity=0.226  Sum_probs=65.7

Q ss_pred             eeEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcc
Q psy12724         67 SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKS  143 (167)
Q Consensus        67 ~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~  143 (167)
                      .+...+.+..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.      ...++.+..++   .|.|.+++.+|+ |.
T Consensus        10 ~~~~~~~~~~v~~G~~v~l~C~~~g---~p~p~i~W~k~~-~~~~------~~~~~~~~~~~~~~~L~i~~~~~~D~-G~   78 (103)
T 3qp3_A           10 RITLRMRSHRVPCGQNTRFILNVQS---KPTAEVKWYHNG-VELQ------ESSKIHYTNTSGVLTLEILDCHTDDS-GT   78 (103)
T ss_dssp             EEEECCCCEEEETTCCEEEEEEEEE---ESCCEEEEEETT-EECC------CCSSEEEEEETTEEEEEECSCCGGGC-EE
T ss_pred             EEEeCCcceEEeCCCeEEEEEEEEe---cCCCEEEEEECC-EECC------CCCCEEEEECCCEEEEEEcCCCcccC-EE
Confidence            3455566788999999999999974   599999999997 5553      24566655433   699999999999 99


Q ss_pred             eEEEeeecC---cceEEEeeeC
Q psy12724        144 YQCRTKHRL---TGETRLSATK  162 (167)
Q Consensus       144 Y~C~a~n~~---~~~~~l~~~~  162 (167)
                      |+|.|.|..   +..+.|.+.+
T Consensus        79 Y~C~a~N~~G~~~~~~~l~V~~  100 (103)
T 3qp3_A           79 YRAVCTNYKGEASDYATLDVTG  100 (103)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEeCCCcEEEEEEEEEEC
Confidence            999999987   4455666654

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.59  E-value=2.9e-15  Score=112.31  Aligned_cols=130  Identities=18%  Similarity=0.291  Sum_probs=84.3

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Ccee---e-------ec-CCc----------eE--------EEe
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQY---Q-------ID-NQD----------FV--------VSQ   66 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~---~-------~~-~~~----------~v--------~~g   66 (167)
                      |.++.+.+|+++.|.|.+.+.+.+.-+.+.|+|++ +..+   .       .. ..|          .+        .+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            88899999999999999988763112469999864 2221   0       00 011          11        279


Q ss_pred             eeEEEecCe-----------EE-------------------EeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEee-
Q psy12724         67 SYTVNIMDE-----------HV-------------------LKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDM-  114 (167)
Q Consensus        67 ~y~c~~~~~-----------~v-------------------~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~-  114 (167)
                      .|.|.+.+.           .|                   ..|+++.|.|.+.+.  .|.| .++|+||+ ..+.... 
T Consensus        87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~--~p~~~~v~W~k~g-~~l~~~~~  163 (212)
T 1q0x_L           87 IYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDF--YPGVVTVDWKVDG-TPVTAGME  163 (212)
T ss_dssp             EEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEE--BSSCCEEEEEETT-EEECTTEE
T ss_pred             EEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEE--eCCCeEEEEEECC-EeCCCCee
Confidence            999987430           01                   148899999999753  2443 89999997 5552110 


Q ss_pred             ----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        115 ----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       115 ----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                          ....++.|..  ...|.|.++..+|+ |.|+|.|.|..
T Consensus       164 ~~~~~~~~~g~~~~--~s~L~i~~~~~~d~-g~Y~C~a~n~~  202 (212)
T 1q0x_L          164 TTQPSKQSNNKYMA--SSYLTLTARAWERH-SSYSCQVTHEG  202 (212)
T ss_dssp             ECCCEECTTSCEEE--EEEEEEEHHHHTTC-CEEEEEEEETT
T ss_pred             cCCceeCCCCCEEE--EEEEEEcHHHccCC-CcEEEEEEeCC
Confidence                0001111211  13599999999998 99999999986

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.59  E-value=5.6e-16  Score=122.24  Aligned_cols=116  Identities=14%  Similarity=0.184  Sum_probs=79.4

Q ss_pred             EEEeCCcEEEEeecC-CCCCCcceeeEEeeCCCceeee-----cCCce----E--------EEeeeEEEecC--------
Q psy12724         21 FVIKGNAAVFKCNLP-SFVSDHLDVVSWADTDGGQYQI-----DNQDF----V--------VSQSYTVNIMD--------   74 (167)
Q Consensus        21 ~v~~G~~~~l~C~a~-~~~~~~~~~i~W~k~~~~~~~~-----~~~~~----v--------~~g~y~c~~~~--------   74 (167)
                      .+..|+++.|.|.+. +.|.   +.++|+|++......     +....    +        ..|.|+|.+.+        
T Consensus       125 ~~~~~~~~~l~C~~~~g~P~---~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~  201 (308)
T 4fom_A          125 IDGGNETVAAICIAATGKPV---AHIDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIR  201 (308)
T ss_dssp             CTTCSCEEEEEEEEEEEBSC---CEEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEE
T ss_pred             EEcCCceEEEEEEecCCcCC---ceEEEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceE
Confidence            345678999999864 4554   589999987643221     11111    1        15899998743        


Q ss_pred             --------------------eEEEeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEe
Q psy12724         75 --------------------EHVLKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMTESTDGKYLVLPSGELHIR  133 (167)
Q Consensus        75 --------------------~~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~  133 (167)
                                          ..+..|+++.|.|.+.   |+|.| .++|+|+++ .+.       .+ .....+..|.|+
T Consensus       202 ~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~---g~P~p~~v~W~k~~~-~~~-------~~-~~~~~~~~l~i~  269 (308)
T 4fom_A          202 YSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNAD---ANPPPFKSVWSRLDG-QWP-------DG-LLASDNTLHFVH  269 (308)
T ss_dssp             EEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEE---EESCEEEEECCBSSS-CCC-------SS-CBCSTTEEECCS
T ss_pred             EeEEEEEecCCeeEEcccceeeeeccccEEEEEEEe---cCCCCcEEEEEECCe-ECC-------Cc-EEEcCCeEEEEC
Confidence                                1234588999999997   45888 589999984 442       11 112223356789


Q ss_pred             ecCcCCCCcceEEEeeecC
Q psy12724        134 DVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       134 ~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +++.+|+ |.|+|.|.|.+
T Consensus       270 ~v~~~d~-G~Y~C~A~N~~  287 (308)
T 4fom_A          270 PLTFNYS-GVYICKVTNSL  287 (308)
T ss_dssp             CCCSCCC-SEEEEEEEETT
T ss_pred             CCChhhC-EEEEEEEEeCC
Confidence            9999999 99999999987

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.59  E-value=2.2e-14  Score=124.03  Aligned_cols=124  Identities=18%  Similarity=0.243  Sum_probs=91.0

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE------EEeeeEEEecCe-----------
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV------VSQSYTVNIMDE-----------   75 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v------~~g~y~c~~~~~-----------   75 (167)
                      ....+.+..+.+|+++.|.|.+.+.|.   +.+.|+|++. .+..+....+      ..|.|+|.+.+.           
T Consensus       206 ~~~~~~~~~~~~G~~~~l~C~~~g~p~---~~i~W~~~g~-~i~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~  281 (642)
T 1e07_A          206 PTISPLNTSYRSGENLNLSCHAASNPP---AQYSWFVNGT-FQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTT  281 (642)
T ss_pred             cEEecCCcccccCCEEEEEEEcCCCCC---cEEEEEECCe-EcccCCceEEecccccCCeEEEEEEEeCCCceEEeeeEE
Confidence            345566778899999999999977765   4799999853 4433222211      379999987430           


Q ss_pred             ------------------EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc-cCCeEEEeecC
Q psy12724         76 ------------------HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL-PSGELHIRDVG  136 (167)
Q Consensus        76 ------------------~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~-~~g~L~I~~v~  136 (167)
                                        .+..|+++.|.|.+.+   .| +.++|+||+ ..+.      .+.++.+. .++.|.|.+++
T Consensus       282 v~v~~~~~~p~i~~~~~~~~~~g~~v~l~C~~~~---~p-~~v~W~~~g-~~l~------~~~~~~~~~~~~~L~i~~~~  350 (642)
T 1e07_A          282 ITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEI---QN-TTYLWWVNN-QSLP------VSPRLQLSNDNRTLTLLSVT  350 (642)
T ss_pred             EEEEccCCCCEEEcCCceeEecCCcEEEEEECCC---CC-ccEEEEECC-ccCC------CcCCEEEeCCCCEEEEeccC
Confidence                              1123778999999985   35 688999997 4552      24566554 35789999999


Q ss_pred             cCCCCcceEEEeeecC
Q psy12724        137 PEDGYKSYQCRTKHRL  152 (167)
Q Consensus       137 ~~D~~G~Y~C~a~n~~  152 (167)
                      .+|+ |.|+|.|.|..
T Consensus       351 ~~d~-G~Y~C~a~n~~  365 (642)
T 1e07_A          351 RNDV-GPYECGIQNEL  365 (642)
T ss_pred             cccC-eeEEEEEeCCC
Confidence            9999 99999999986

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.58  E-value=3.2e-15  Score=98.68  Aligned_cols=76  Identities=18%  Similarity=0.292  Sum_probs=60.4

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcceEEEee
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQCRTK  149 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~C~a~  149 (167)
                      .+..+.+|+++.|.|.+.   + |.|.++|+||+ ..|.      .+.++.+..+|   .|.|.+++.+|+ |.|+|.|.
T Consensus         4 t~v~~~~G~~v~l~C~vs---~-p~p~v~W~k~g-~~l~------~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~   71 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLS---G-PGGPVRWYKDG-ERLA------SQGRVQLEQAGARQVLRVQGARSGDA-GEYLCDAP   71 (84)
T ss_dssp             CCEEECTTSCEEEECCCS---C-CSTTCEEEETT-EECC------CCSSEEEEECSSCEEEEESSCSSTTC-EEEEEECT
T ss_pred             eEEEEecCCCEEEEEEEC---C-CCcEEEEEECC-EEcc------ccccEEEeecCCeEEEEecCCCCccc-EEEEEEEC
Confidence            456788999999999985   3 77889999997 5664      35667666555   699999999999 99999998


Q ss_pred             ecCcceEEEeee
Q psy12724        150 HRLTGETRLSAT  161 (167)
Q Consensus       150 n~~~~~~~l~~~  161 (167)
                      |. +..+.|++.
T Consensus        72 n~-~~~a~l~V~   82 (84)
T 2lu7_A           72 QD-SRIFLVSVE   82 (84)
T ss_dssp             TT-CEEEEEEEC
T ss_pred             CE-EEEEEEEEE
Confidence            86 456666663

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=4.5e-15  Score=100.63  Aligned_cols=79  Identities=20%  Similarity=0.259  Sum_probs=63.2

Q ss_pred             EEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcceE
Q psy12724         69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        69 ~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~  145 (167)
                      .-...+..+.+|+++.|.|.+  .   |.|.++|+||+ ..+.      .+.|+.+..+|   .|.|.+++.+|+ |.|+
T Consensus        11 ~~~~~~~~v~~G~~v~l~C~v--~---p~p~v~W~k~g-~~l~------~~~r~~i~~~~~~~~L~I~~v~~~D~-G~Y~   77 (100)
T 2yuz_A           11 LTPLTDQTVNLGKEICLKCEI--S---ENIPGKWTKNG-LPVQ------ESDRLKVVQKGRIHKLVIANALTEDE-GDYV   77 (100)
T ss_dssp             SBCCCCEEEETTSCCCEEEEC--S---SCCCEEEEETT-EECC------CCSSEEEEECSSEEEEEESSCCGGGC-SEEE
T ss_pred             eccCCceEEcCCCCEEEEEEe--C---CCCeEEEEECC-EECC------CCCcEEEEEeCCEEEEEECCCChhhC-EEEE
Confidence            334567889999999999998  2   78889999998 5653      35677777666   699999999999 9999


Q ss_pred             EEeeecC-cceEEEee
Q psy12724        146 CRTKHRL-TGETRLSA  160 (167)
Q Consensus       146 C~a~n~~-~~~~~l~~  160 (167)
                      |.|.|.. +..+.|.+
T Consensus        78 C~a~N~~~~~~a~L~V   93 (100)
T 2yuz_A           78 FAPDAYNVTLPAKVHV   93 (100)
T ss_dssp             EEESSSCCCEEEEEEE
T ss_pred             EEEcCCCeeEEEEEEE
Confidence            9999984 44556655

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.58  E-value=6.3e-15  Score=117.41  Aligned_cols=125  Identities=11%  Similarity=0.200  Sum_probs=78.8

Q ss_pred             EEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec--------C-Cce-E---E---------EeeeEEEecCe--
Q psy12724         20 VFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID--------N-QDF-V---V---------SQSYTVNIMDE--   75 (167)
Q Consensus        20 ~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~--------~-~~~-v---~---------~g~y~c~~~~~--   75 (167)
                      ..+.+|+++.|.|.+.+.+.+. ..+.|+|++. .+...        . ..+ +   +         .|.|+|.+.+.  
T Consensus       127 ~~~~~g~~~~l~C~~~g~p~~~-~~v~W~k~g~-~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~  204 (327)
T 2wng_A          127 ARATPQHTVSFTCESHGFSPRD-ITLKWFKNGN-ELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTL  204 (327)
T ss_dssp             SCBCTTCEEEEEEEEEEEBSSC-CEEEEEETTE-ECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTS
T ss_pred             cccCCCCEEEEEEEEeCccCCC-cEEEEEECCE-EccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEecccc
Confidence            4578899999999999877541 2799999853 33211        1 111 1   0         49999987530  


Q ss_pred             --------------------------EEEeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeeeecCCceEEEccCC
Q psy12724         76 --------------------------HVLKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMTESTDGKYLVLPSG  128 (167)
Q Consensus        76 --------------------------~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g  128 (167)
                                                .+.+|+++.|.|.+.+.  .|.+ .++|+||+ ..+....    ..++....+|
T Consensus       205 ~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~G~~v~l~C~~~g~--~p~~~~v~W~k~g-~~l~~~~----~~~~~~~~~g  277 (327)
T 2wng_A          205 QGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKF--YPQRLQLTWLENG-NVSRTET----ASTVTENKDG  277 (327)
T ss_dssp             CSCCEEEEEEGGGTBCBCCEEEEEEECCSSTTCCEEEEEEEEE--BSSCEEEEEEETT-EEEEEEE----CCSCEECTTS
T ss_pred             CCCcccceEEeccccCCCCEEEEecCCcCCCCcEEEEEEEccc--cCCCcEEEEEECC-eEccCcc----cCceEECCCC
Confidence                                      02379999999999753  2444 79999997 5664321    1223333343


Q ss_pred             ------eEEEeecCcCCCCcceEEEeeecCcc
Q psy12724        129 ------ELHIRDVGPEDGYKSYQCRTKHRLTG  154 (167)
Q Consensus       129 ------~L~I~~v~~~D~~G~Y~C~a~n~~~~  154 (167)
                            .|.|.++..+|+ |.|+|.|.|....
T Consensus       278 ~~~~~~~L~i~~~~~~d~-G~Y~C~a~N~~~~  308 (327)
T 2wng_A          278 TYNWMSWLLVNVSAHRDD-VKLTCQVEHDGQP  308 (327)
T ss_dssp             CEEEEEEEEC-------C-CEEEEEEEETTCC
T ss_pred             cEEEEEEEEEccccccCC-CEEEEEEEeCCCC
Confidence                  488999999998 9999999998733

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.58  E-value=9.9e-15  Score=113.18  Aligned_cols=109  Identities=17%  Similarity=0.168  Sum_probs=78.3

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc---eE------EEeeeEEEecC-----------
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD---FV------VSQSYTVNIMD-----------   74 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~---~v------~~g~y~c~~~~-----------   74 (167)
                      ..+.+..+.+|+++.|.|.+.  +.   +.++|   ++..+..++.+   .+      ..|.|+|.+.+           
T Consensus       103 ~~~~~~~v~~G~~v~l~C~~~--p~---~~i~W---~g~~~~~~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~  174 (265)
T 2oz4_A          103 VILTKPEVSEGTEVTVKCEAH--PR---AKVTL---NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQ  174 (265)
T ss_dssp             EEESCSEEETTCEEEEEEECC--TT---SEEEE---SSCSSSCCSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEE
T ss_pred             eecCCceecCCCcEEEEEEcc--CC---CEEEE---CCEEccCCCCcEEEEEccccccCCceEEEEEEcCCCCCcccccc
Confidence            345567789999999999998  33   47999   34444322221   11      14679997631           


Q ss_pred             --------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEee
Q psy12724         75 --------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRD  134 (167)
Q Consensus        75 --------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~  134 (167)
                                          ..+.+|+++.|.|.+.   |+|.|.++|+|++. .+              +.+|.|.  +
T Consensus       175 ~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~---g~P~p~i~W~~~~~-~~--------------~~~g~~~--~  234 (265)
T 2oz4_A          175 TRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAW---GNPLPELKCLKDGT-FP--------------LPIGESV--T  234 (265)
T ss_dssp             EEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCE---EESCCEEEEEETTT-EE--------------CCTTSCE--E
T ss_pred             cEEEEEEeCCccccccCCCccEEcCCCeEEEEeECc---cCCCCeEEEEECCc-cc--------------CCCCcEE--E
Confidence                                2457899999999987   56999999999973 11              2345554  4


Q ss_pred             cCcCCCCcceEEEeeecC
Q psy12724        135 VGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       135 v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++.+|+ |.|+|.|.|..
T Consensus       235 v~~~d~-G~Y~C~a~N~~  251 (265)
T 2oz4_A          235 VTRDLE-GTYLCRARSTQ  251 (265)
T ss_dssp             CCGGGC-EEEEEEEEETT
T ss_pred             eehhhC-eEEEEEEECCC
Confidence            889998 99999999987

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.57  E-value=5.4e-14  Score=105.02  Aligned_cols=120  Identities=15%  Similarity=0.214  Sum_probs=81.4

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceee---ec----------C----Cc-------eE-------
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ---ID----------N----QD-------FV-------   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~---~~----------~----~~-------~v-------   63 (167)
                      ..|+.+.+.+|+++.|.|.+.+...  .+.|.|.|++ ..+.   +.          .    .|       .+       
T Consensus         3 ~~p~~v~~~~G~~v~L~C~~~~~~~--~~~v~W~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~   79 (193)
T 2if7_A            3 LTPLMVNGILGESVTLPLEFPAGEK--VNFITWLFNE-TSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKM   79 (193)
T ss_dssp             CCCEEEEEETTSCEEECCCCCCCSC--CCEEEEEETT-EEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCG
T ss_pred             CCCeEEEEEecCeEEEeccCCCccc--ccEEEEEECC-EEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCc
Confidence            4678899999999999999975332  3579999974 2221   10          0    01       11       


Q ss_pred             -EEeeeEEEecCe----------EE----------------EeCC-cEEEEeeeCCccCCcceeEEEEeCCCeeeEEeee
Q psy12724         64 -VSQSYTVNIMDE----------HV----------------LKGN-SAVLKCHIPSFVADYVAVESWISDQGEELFVDMT  115 (167)
Q Consensus        64 -~~g~y~c~~~~~----------~v----------------~~G~-~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~  115 (167)
                       .+|.|+|.+.+.          .|                ..|+ ++.|.|.+.+  ..|.|.++|+|++ ..+.    
T Consensus        80 ~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g--~~p~p~i~W~~~g-~~l~----  152 (193)
T 2if7_A           80 EDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVED--ADDNVSFRWEALG-NTLS----  152 (193)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEES--CCTTCEEEEEETT-EEEE----
T ss_pred             ccCceEEEEEEecCCCeEEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEec--CCCceEEEEEeCC-EEcC----
Confidence             279999987430          01                1344 7999999975  2368899999986 3331    


Q ss_pred             ecCCceEEEccCCeEEEeecCcC-CCCcceEEEeeecCcce
Q psy12724        116 ESTDGKYLVLPSGELHIRDVGPE-DGYKSYQCRTKHRLTGE  155 (167)
Q Consensus       116 ~~~~~r~~~~~~g~L~I~~v~~~-D~~G~Y~C~a~n~~~~~  155 (167)
                                .++.|.|+..... |+ |.|+|.|.|.++..
T Consensus       153 ----------~~~~l~i~~~~~~~d~-G~Y~C~a~N~~g~~  182 (193)
T 2if7_A          153 ----------SQPNLTVSWDPRISSE-QDYTCIAENAVSNL  182 (193)
T ss_dssp             ----------SSSEEEEEECTTTCSC-CEEEEEEEETTEEE
T ss_pred             ----------CCCeEEEEeccCcCCC-CcEEEEEECCCCcc
Confidence                      2346888765554 88 99999999998443

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.57  E-value=9.1e-15  Score=125.51  Aligned_cols=132  Identities=13%  Similarity=0.146  Sum_probs=85.8

Q ss_pred             EEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee----cCC----ceE----EEeeeEEEecC--------------
Q psy12724         21 FVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI----DNQ----DFV----VSQSYTVNIMD--------------   74 (167)
Q Consensus        21 ~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~----~~~----~~v----~~g~y~c~~~~--------------   74 (167)
                      ....|+.+.|.|.+.+.|.   |.|+|+++++.....    ...    ..+    ..|.|+|.+.|              
T Consensus       150 ~~~~~~~~~L~C~a~G~P~---P~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V  226 (527)
T 3qs9_E          150 FRKMENQDALVCISESVPE---PIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDL  226 (527)
T ss_dssp             EEECSSSSCEEEEEEESSC---CEEEEEEC-------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEES
T ss_pred             EEecCCceEEEEEEceecC---CeEEEEECCCCCccccccCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEEEE
Confidence            3456888899999999876   489999986532110    000    011    27999998753              


Q ss_pred             ----------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceE----EEccCCeEEEeecCcCCC
Q psy12724         75 ----------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY----LVLPSGELHIRDVGPEDG  140 (167)
Q Consensus        75 ----------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~----~~~~~g~L~I~~v~~~D~  140 (167)
                                ..+.+|+++.|.|.+.+  ++|.|.++|+|++. .+..... ....++    ....++.|.|.+++.+|+
T Consensus       227 ~~~p~~~p~~~~v~~G~~v~L~C~~~~--g~p~p~i~W~k~g~-~l~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~Ds  302 (527)
T 3qs9_E          227 NQTPQTTLPQLFLKVGEPLWIRCKAVH--VNHGFGLTWELENK-ALEEGNY-FEMSTYSTNRTMIRILFAFVSSVARNDT  302 (527)
T ss_dssp             SSCCCCSCCEEEECTTSCEEEEEEEEE--SSSCCCEEEECSSS-CCCGGGE-EEEEEEETTTEEEEEEEEEESSCCGGGC
T ss_pred             eccCccCCCceEEeCCCeEEEEEEEcc--CCCCeEEEEEECCE-ECCCCce-eeeeeeccCcceeeEEEEEEccCCcccC
Confidence                      24568999999999952  45899999999983 4421000 000011    122345799999999999


Q ss_pred             CcceEEEeeecCcceEEEee
Q psy12724        141 YKSYQCRTKHRLTGETRLSA  160 (167)
Q Consensus       141 ~G~Y~C~a~n~~~~~~~l~~  160 (167)
                       |.|+|.|.|..+..+.|.+
T Consensus       303 -G~Y~C~a~N~~~~~~~L~V  321 (527)
T 3qs9_E          303 -GYYTCSSSKHPSQSALVTI  321 (527)
T ss_dssp             -EEEEEEETTEEEEEEEEEE
T ss_pred             -eEEEEEEEeCCCceEEEEE
Confidence             9999999998544455554

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.57  E-value=4.8e-14  Score=111.75  Aligned_cols=147  Identities=16%  Similarity=0.246  Sum_probs=93.1

Q ss_pred             eeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cce---eee-c------------CCc-----------
Q psy12724         10 SQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQ---YQI-D------------NQD-----------   61 (167)
Q Consensus        10 ~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~---~~~-~------------~~~-----------   61 (167)
                      .+....++..+.+.+|+++.|.|.+.+.+.. .+.+.|+|++ +..   +.. +            ..|           
T Consensus        22 ~~~~v~~p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~  100 (291)
T 2gki_A           22 REVQLQQSGPELVKPGASVKMSCKASGYTFT-SYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSST  100 (291)
T ss_dssp             -CCEEEECCCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTE
T ss_pred             ccEEEEcCCcEEecCCCCEEEEEeccCCccc-ccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCE
Confidence            3445566778999999999999999876521 2469999853 111   100 0            011           


Q ss_pred             -eE--------EEeeeEEEecC----------------------------------------------eEEEeCCcEEEE
Q psy12724         62 -FV--------VSQSYTVNIMD----------------------------------------------EHVLKGNSAVLK   86 (167)
Q Consensus        62 -~v--------~~g~y~c~~~~----------------------------------------------~~v~~G~~a~l~   86 (167)
                       .+        .+|.|.|.+.+                                              ..+.+|+++.|.
T Consensus       101 ~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~  180 (291)
T 2gki_A          101 AYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMS  180 (291)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEE
T ss_pred             EEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEE
Confidence             11        16888887521                                              124579999999


Q ss_pred             eeeCCccCCcce------eEEEEeCC-Ceee--EEeee----ecCCceEEEccC---CeEEEeecCcCCCCcceEEEeee
Q psy12724         87 CHIPSFVADYVA------VESWISDQ-GEEL--FVDMT----ESTDGKYLVLPS---GELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus        87 C~~~~~~~~p~p------~i~W~k~~-~~~l--~~~~~----~~~~~r~~~~~~---g~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      |.+.+.   |.|      .+.|+|++ +..+  .-...    ....+||.+..+   +.|.|++++.+|+ |.|.|.|.|
T Consensus       181 C~~~~~---~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~a~~  256 (291)
T 2gki_A          181 CKSSQS---LFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDL-AVYYCKQSY  256 (291)
T ss_dssp             EEESSC---CEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-EEEEEEEEE
T ss_pred             EEcCCc---cccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHC-EEEEEEEcc
Confidence            999743   554      89999963 1211  11000    001456765432   3799999999999 999999999


Q ss_pred             cC----cceEEEeee
Q psy12724        151 RL----TGETRLSAT  161 (167)
Q Consensus       151 ~~----~~~~~l~~~  161 (167)
                      ..    ..-++|.+.
T Consensus       257 ~~~~~fg~gt~l~v~  271 (291)
T 2gki_A          257 YHMYTFGSGTKLEIK  271 (291)
T ss_dssp             TTEEEECCCEEEEEE
T ss_pred             CCceEEcCCEEEEEE
Confidence            53    445555553

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=6.4e-15  Score=101.74  Aligned_cols=74  Identities=22%  Similarity=0.282  Sum_probs=62.0

Q ss_pred             EEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEe
Q psy12724         69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        69 ~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      ...+.+..+.+|+++.|.|.+.   |.|.|.++|+|++ ..+.     ....++.+..+|.|.|.+++.+|+ |.|+|.|
T Consensus        12 ~~~p~~~~v~~G~~v~l~C~~~---g~p~p~i~W~k~g-~~~~-----~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a   81 (118)
T 2eo9_A           12 RQGPVNQTVAVDGTFVLSCVAT---GSPVPTILWRKDG-VLVS-----TQDSRIKQLENGVLQIRYAKLGDT-GRYTCIA   81 (118)
T ss_dssp             SBCCCCEEEETTCEEEEECBCC---CSSCCEEEEEESS-SBCC-----TTSTTEEEEETTEEEEESCCGGGC-CCEEEEE
T ss_pred             EcCCCCEEEcCCCeEEEEEEEE---ecCCCEEEEEECC-EECc-----CCCCeEEEccCCEEEEccCCcCCC-EEEEEEE
Confidence            3345567889999999999997   4588999999997 4552     235778888899999999999999 9999999


Q ss_pred             eecC
Q psy12724        149 KHRL  152 (167)
Q Consensus       149 ~n~~  152 (167)
                      .|..
T Consensus        82 ~n~~   85 (118)
T 2eo9_A           82 STPS   85 (118)
T ss_dssp             ECSS
T ss_pred             EcCC
Confidence            9987

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.57  E-value=5.5e-15  Score=118.00  Aligned_cols=125  Identities=12%  Similarity=0.191  Sum_probs=86.8

Q ss_pred             EEEEeCCcEEEEee-----cCCCCCCcceeeEEeeCCCceeeecCCc--------eE--------EEeeeEEEecC----
Q psy12724         20 VFVIKGNAAVFKCN-----LPSFVSDHLDVVSWADTDGGQYQIDNQD--------FV--------VSQSYTVNIMD----   74 (167)
Q Consensus        20 ~~v~~G~~~~l~C~-----a~~~~~~~~~~i~W~k~~~~~~~~~~~~--------~v--------~~g~y~c~~~~----   74 (167)
                      ..+.+|+++.|.|.     +.+.|.   +.+.|+|++. .+..+..+        .+        ..|.|+|.+.+    
T Consensus       130 ~~~~~g~~v~l~C~~~~~~~~g~p~---~~v~W~k~g~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  205 (339)
T 3o4o_C          130 QILTLSTSGVLVCPDLSEFTRDKTD---VKIQWYKDSL-LLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEG  205 (339)
T ss_dssp             EEEETTSCEEEECCSCTTTCCSSSC---CCBCCEESSC-BCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTT
T ss_pred             eEEECCCCEEEEecCCcccccCCCC---ceEEEecCCe-eCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCC
Confidence            47889999999999     565554   4799999754 34322111        11        27999998742    


Q ss_pred             ------------------------------eEEEeCCcEEEEeee---CCccCCc-ceeEEEEeCCCeeeEEeee---ec
Q psy12724         75 ------------------------------EHVLKGNSAVLKCHI---PSFVADY-VAVESWISDQGEELFVDMT---ES  117 (167)
Q Consensus        75 ------------------------------~~v~~G~~a~l~C~~---~~~~~~p-~p~i~W~k~~~~~l~~~~~---~~  117 (167)
                                                    ..+.+|+++.|.|.+   .   +.| .|.+.|++++ ..+.....   ..
T Consensus       206 ~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~---g~P~~~~v~W~~~g-~~~~~~~~~~~~~  281 (339)
T 3o4o_C          206 QQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGT---GTPLTTMLWWTAND-THIESAYPGGRVT  281 (339)
T ss_dssp             BCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESS---SCCSSCEEEEESSS-SCSSSSSCSSSCE
T ss_pred             eEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCC---CCCCCceEEEEECC-eecccccccccce
Confidence                                          012459999999999   6   457 8899999987 34311000   01


Q ss_pred             CCceEEEccCC------eEEEeecCcCCCCcceEEEeeecC
Q psy12724        118 TDGKYLVLPSG------ELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       118 ~~~r~~~~~~g------~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+.++.+..+|      .|.|.+++.+|+-|.|+|.|.|..
T Consensus       282 ~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~  322 (339)
T 3o4o_C          282 EGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTL  322 (339)
T ss_dssp             ECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETT
T ss_pred             ecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEecc
Confidence            23456666667      799999999992189999999987

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.57  E-value=6.4e-15  Score=121.26  Aligned_cols=122  Identities=21%  Similarity=0.365  Sum_probs=82.3

Q ss_pred             EEeCCcEEEEeecCCCCCCcce-eeEEeeCCCceeeec----------CCc------eE--------EEeeeEEEecC--
Q psy12724         22 VIKGNAAVFKCNLPSFVSDHLD-VVSWADTDGGQYQID----------NQD------FV--------VSQSYTVNIMD--   74 (167)
Q Consensus        22 v~~G~~~~l~C~a~~~~~~~~~-~i~W~k~~~~~~~~~----------~~~------~v--------~~g~y~c~~~~--   74 (167)
                      +.+|+++.|.|.+.+..++  + .++|+|++. .+...          .+.      .+        ..|.|+|.+.+  
T Consensus       128 ~~~g~~~~l~C~~~g~~p~--~~~v~W~k~g~-~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  204 (438)
T 1qgc_4          128 QLTSGGASVVCFLNNFYPK--DINVKWKIDGS-ERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT  204 (438)
T ss_dssp             HHHTTEEEEEEEEEEEBSS--CEEEEEEETTE-EECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETT
T ss_pred             hccCCceEEEEEEccccCC--CcEEEEEECCE-EcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecc
Confidence            3468999999999874322  3 799999743 33221          111      11        16999998632  


Q ss_pred             -----------------------eEEEeCCcEEEEeeeCCccCCc--ceeEEEEeCC-CeeeEEe--e---------eec
Q psy12724         75 -----------------------EHVLKGNSAVLKCHIPSFVADY--VAVESWISDQ-GEELFVD--M---------TES  117 (167)
Q Consensus        75 -----------------------~~v~~G~~a~l~C~~~~~~~~p--~p~i~W~k~~-~~~l~~~--~---------~~~  117 (167)
                                             ..+.+|+++.|.|.+.+.   |  .+.++|+|++ +..+...  .         ...
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~---p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~  281 (438)
T 1qgc_4          205 STSPIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGF---IFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDS  281 (438)
T ss_dssp             CSSCEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESS---CGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGG
T ss_pred             cCCceecccccccceeEEecCCceEEecCCcEEEEEEEccc---ccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcc
Confidence                                   245689999999999753   5  6789999972 1222110  0         001


Q ss_pred             CCceEEEccC-----CeEEEeecCcCCCCcceEEEeee
Q psy12724        118 TDGKYLVLPS-----GELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus       118 ~~~r~~~~~~-----g~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      ..+|+.+..+     ..|.|.+++.+|+ |.|+|.|.|
T Consensus       282 ~~~r~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n  318 (438)
T 1qgc_4          282 VKGRFTISRDNAKNTLYLQMSSLRSADT-AMYYCVRRE  318 (438)
T ss_dssp             GTTTEEEEEETTTTEEEEEECSCCGGGC-CEEEEEECC
T ss_pred             cCCcEEEEeecCCCeEEEEECCCChhhC-EEEEEEEEc
Confidence            2467766542     2799999999999 999999998

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.57  E-value=1.4e-14  Score=96.62  Aligned_cols=85  Identities=19%  Similarity=0.224  Sum_probs=63.1

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC--eEEEeecCcCCCCcceE
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG--ELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g--~L~I~~v~~~D~~G~Y~  145 (167)
                      +...+.+..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+...    ...++....+|  .|.|.+++.+|+ |.|+
T Consensus         8 ~~~~p~~~~~~~G~~~~l~C~~~g---~p~p~v~W~~~g-~~~~~~----~~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~   78 (100)
T 2kdg_A            8 FIQVPENMSIDEGRFCRMDFKVSG---LPAPDVSWYLNG-RTVQSD----DLHKMIVSEKGLHSLIFEVVRASDA-GAYA   78 (100)
T ss_dssp             CCCCCCCEEEETTCCEEEEEECEE---ESCCEEEEEETT-EEECCC----SSSCEEEETTTEEEEEESSCCGGGC-EEEE
T ss_pred             EEeCCCCEEecCCCEEEEEEEEEe---eCCCEEEEEECC-EECcCC----CcEEEEEcCCCeEEEEECCCCcccC-EEEE
Confidence            333455678899999999999974   588999999997 555321    22344445555  899999999999 9999


Q ss_pred             EEeeecC---cceEEEeee
Q psy12724        146 CRTKHRL---TGETRLSAT  161 (167)
Q Consensus       146 C~a~n~~---~~~~~l~~~  161 (167)
                      |.|.|..   +..+.|.+.
T Consensus        79 C~a~n~~g~~~~~~~l~V~   97 (100)
T 2kdg_A           79 CVAKNRAGEATFTVQLDVL   97 (100)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEcCCCeEEEEEEEEEE
Confidence            9999987   334455543

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.57  E-value=1.8e-14  Score=95.82  Aligned_cols=82  Identities=18%  Similarity=0.320  Sum_probs=63.1

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcce
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSY  144 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y  144 (167)
                      +.-.+.+..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.      .+.++.+..++   .|.|.+++.+|+ |.|
T Consensus         9 i~~~~~~~~v~~G~~~~l~C~~~g---~p~p~v~W~~~g-~~~~------~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y   77 (99)
T 3puc_A            9 IVTGLQDTTVSSDSVAKFAVKATG---EPRPTAIWTKDG-KAIT------QGGKYKLSEDKGGFFLEIHKTDTSDS-GLY   77 (99)
T ss_dssp             EEECCCCEEEESSSCEEEEEEEEE---ESCCEEEEEETT-EECC------SSSSEEEEEETTEEEEEECSCCGGGC-EEE
T ss_pred             EEecCccEEEeCCCcEEEEEEEEe---cCCCEEEEEECC-EECc------CCCCEEEEEeCCEEEEEECCCCcccC-EEE
Confidence            334456678899999999999974   588999999987 4553      35667666544   699999999999 999


Q ss_pred             EEEeeecC---cceEEEee
Q psy12724        145 QCRTKHRL---TGETRLSA  160 (167)
Q Consensus       145 ~C~a~n~~---~~~~~l~~  160 (167)
                      +|.|.|..   +..+.|.+
T Consensus        78 ~C~a~n~~g~~~~~~~l~V   96 (99)
T 3puc_A           78 TCTVKNSAGSVSSSCKLTI   96 (99)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEeCCCcEeEEEEEEE
Confidence            99999987   33444444

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.56  E-value=2.5e-14  Score=95.30  Aligned_cols=74  Identities=19%  Similarity=0.213  Sum_probs=58.1

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc--cCC--eEEEeecCcCCCCcc
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL--PSG--ELHIRDVGPEDGYKS  143 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~--~~g--~L~I~~v~~~D~~G~  143 (167)
                      +.-.+.+..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.      ...++.+.  .++  .|.|.+++.+|+ |.
T Consensus         8 ~~~~~~~~~v~~G~~v~l~C~~~g---~p~p~v~W~k~g-~~~~------~~~~~~~~~~~~~~~~L~i~~v~~~D~-G~   76 (99)
T 1g1c_A            8 IFERIQSQTVGQGSDAHFRVRVVG---KPDPECEWYKNG-VKIE------RSDRIYWYWPEDNVCELVIRDVTGEDS-AS   76 (99)
T ss_dssp             EEECCCCEEEETTSCEEEEEEEEE---ESCCEEEEEETT-EECC------CCSSEEEEEEETTEEEEEECSCCGGGC-EE
T ss_pred             eEecCcceEEcCCCcEEEEEEEEE---eCCCEEEEEECC-EECC------CCCCEEEEEcCCCEEEEEECCCCcCCC-EE
Confidence            444556788999999999999984   589999999997 4553      23344332  234  799999999999 99


Q ss_pred             eEEEeeecC
Q psy12724        144 YQCRTKHRL  152 (167)
Q Consensus       144 Y~C~a~n~~  152 (167)
                      |+|.|.|..
T Consensus        77 Y~C~a~N~~   85 (99)
T 1g1c_A           77 IMVKAINIA   85 (99)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEECC
Confidence            999999987

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.56  E-value=1.5e-14  Score=100.15  Aligned_cols=77  Identities=19%  Similarity=0.310  Sum_probs=62.6

Q ss_pred             eeeEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC----eEEEeecCcCCCC
Q psy12724         66 QSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG----ELHIRDVGPEDGY  141 (167)
Q Consensus        66 g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g----~L~I~~v~~~D~~  141 (167)
                      ..|...+.+..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+..     ...|+.+..++    .|.|.+++.+|+ 
T Consensus        16 p~f~~~p~~~~v~~G~~v~L~C~~~g---~p~p~v~W~k~~-~~~~~-----~~~~~~~~~~~~~~~~L~I~~v~~~D~-   85 (116)
T 2kkq_A           16 PMFIYKPQSKKVLEGDSVKLECQISA---IPPPKLFWKRNN-EMVQF-----NTDRISLYQDNTGRVTLLIKDVNKKDA-   85 (116)
T ss_dssp             CCBSSCCCCEEEETTEEEEEEEEBCC---BSCCEEEEEETT-EECCC-----CBTTEEEEECTTCEEEEEEEEECGGGC-
T ss_pred             CeEEeCCCcEEEeCCCcEEEEEEEec---cCCCEEEEEECC-EECcC-----CCCeEEEEeCCCCeEEEEECCCCcccC-
Confidence            44666677889999999999999984   588999999997 45431     24667666543    799999999999 


Q ss_pred             cceEEEeeecC
Q psy12724        142 KSYQCRTKHRL  152 (167)
Q Consensus       142 G~Y~C~a~n~~  152 (167)
                      |.|+|.|.|..
T Consensus        86 G~Y~C~a~N~~   96 (116)
T 2kkq_A           86 GWYTVSAVNEA   96 (116)
T ss_dssp             EEEEEEEEETT
T ss_pred             EEEEEEEEcCC
Confidence            99999999987

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.55  E-value=1.4e-14  Score=115.08  Aligned_cols=122  Identities=12%  Similarity=0.121  Sum_probs=75.5

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee--c-----C-Cc---eE------EEeeeEEEecC-
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI--D-----N-QD---FV------VSQSYTVNIMD-   74 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~--~-----~-~~---~v------~~g~y~c~~~~-   74 (167)
                      +...+.. .+.+|+++.|.|.+.+.+    +.+.|+|++......  .     . ..   .+      .+|.|+|.+.+ 
T Consensus       122 ~~~~~~~-~v~~G~~v~L~C~~~~~~----~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~  196 (316)
T 3vh8_G          122 LLAHPGP-LVKSGERVILQCWSDIMF----EHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVT  196 (316)
T ss_dssp             EEEESCS-EEETTCCEEEEEEESSCC----SEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECT
T ss_pred             EEecCCC-ccCCCCeEEEEEcCCCCC----cEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecC
Confidence            4444443 388999999999996433    368999986543211  0     0 00   11      27999998642 


Q ss_pred             -------------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEE
Q psy12724         75 -------------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYL  123 (167)
Q Consensus        75 -------------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~  123 (167)
                                                     ..+.+|+++.|.|.+.    .|.+.+.|+|++. .+...     ..+..
T Consensus       197 ~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~----~~~~~~~W~k~g~-~~~~~-----~~~~~  266 (316)
T 3vh8_G          197 HTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSR----SSYDMYHLSREGG-AHERR-----LPAVR  266 (316)
T ss_dssp             TCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEEES----SCCSEEEEEETTS-SCCEE-----EECEE
T ss_pred             CCCccccCCCCCEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEECC----CCCcEEEEEECCC-cCCCc-----eecee
Confidence                                           0234699999999996    2678899999984 44221     11111


Q ss_pred             Ecc---CCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        124 VLP---SGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       124 ~~~---~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ...   ++.|.|.+++  |+ |.|+|.|.|..
T Consensus       267 ~~~~~~~~~L~i~~v~--D~-G~Y~C~a~n~~  295 (316)
T 3vh8_G          267 KVNRTFQADFPLGPAT--HG-GTYRCFGSFRH  295 (316)
T ss_dssp             CTTSCEEEEEECC--------CEEEEEEEBTT
T ss_pred             ccCCceeEEEEcCCcC--CC-EEEEEEeecCC
Confidence            111   2579999999  99 99999999953

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.55  E-value=9.7e-16  Score=116.47  Aligned_cols=131  Identities=18%  Similarity=0.268  Sum_probs=76.1

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC-cee---e------ec--CCc----------eE-------
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG-GQY---Q------ID--NQD----------FV-------   63 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~-~~~---~------~~--~~~----------~v-------   63 (167)
                      +...|.++.+.+|+++.|.|.+.+.+.   +.+.|+|++. ..+   .      ..  ..|          .+       
T Consensus        26 v~~~p~~~~v~~G~~v~L~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  102 (233)
T 3bqu_C           26 VTQSPASLSMSIGEKVTIRCITSTDID---DDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS  102 (233)
T ss_dssp             EEEECSBC-------CCEEEEEEEEES---SCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred             EEEcCCeEEEecCCCEEEEEecCCcCC---CeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence            445578889999999999999987764   3699988542 111   0      00  001          01       


Q ss_pred             -EEeeeEEEecCe----------------------EE-------EeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEE
Q psy12724         64 -VSQSYTVNIMDE----------------------HV-------LKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFV  112 (167)
Q Consensus        64 -~~g~y~c~~~~~----------------------~v-------~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~  112 (167)
                       .+|.|.|.+.+.                      .+       .+|+++.|.|.+.+.  .|.| .++|+||+ ..+.+
T Consensus       103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~--~p~~~~v~W~k~g-~~~~~  179 (233)
T 3bqu_C          103 EDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNF--YPKDINVKWKIDG-SERQN  179 (233)
T ss_dssp             CCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEE--BSSCEEEEEEEC------C
T ss_pred             HHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccc--cCCceEEEEEECC-eeCCC
Confidence             279999987430                      11       138999999999753  2443 69999997 45432


Q ss_pred             e-e-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        113 D-M-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       113 ~-~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      . .     ....++.|..  ...|.|.+++.+|+ |.|+|.|.|..
T Consensus       180 ~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~-g~Y~C~a~n~~  222 (233)
T 3bqu_C          180 GVLNSWTDQDSKDSTYSM--SSTLTLTKDEYERH-NSYTCEATHKT  222 (233)
T ss_dssp             CEEEEECCCCTTTCCEEE--EEEEEEEHHHHHTC-CCEEEEEEEC-
T ss_pred             CceEecCCccCCCCCEEE--EEEEEECHHHhCCC-CCEEEEEEeCC
Confidence            1 0     0011222322  23699999999999 99999999975

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.55  E-value=2.2e-14  Score=95.57  Aligned_cols=82  Identities=21%  Similarity=0.369  Sum_probs=62.9

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE-ccCC--eEEEeecCcCCCCcceEEEe
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV-LPSG--ELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~-~~~g--~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      +.+..+.+|+++.|.|.+.+.  +|.|.++|+|++ ..+.      ...++.+ ..++  .|.|.+++.+|+ |.|+|.|
T Consensus         8 ~~~~~v~~G~~v~l~C~~~g~--~p~~~v~W~~~~-~~~~------~~~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a   77 (97)
T 2bk8_A            8 IMHAVGEEGGHVKYVCKIENY--DQSTQVTWYFGV-RQLE------NSEKYEITYEDGVAILYVKDITKLDD-GTYRCKV   77 (97)
T ss_dssp             CCCEEECTTCCEEEEEEEESC--CTTCEEEEEETT-EECC------SSSSEEEEEETTEEEEEECSCCGGGC-EEEEEEE
T ss_pred             CcCEEEcCCCcEEEEEEEecc--CCCCEEEEEECC-EECc------CCCCEEEEEcCCeEEEEEecCChhhC-eEEEEEE
Confidence            456788999999999999731  388999999997 4542      3456655 3456  899999999999 9999999


Q ss_pred             eecC---cceEEEeeeCC
Q psy12724        149 KHRL---TGETRLSATKG  163 (167)
Q Consensus       149 ~n~~---~~~~~l~~~~~  163 (167)
                      .|..   ...+.|.+.+.
T Consensus        78 ~n~~g~~~~~~~l~V~~~   95 (97)
T 2bk8_A           78 VNDYGEDSSYAELFVKGV   95 (97)
T ss_dssp             ECSSCEEEEEEEEEETTT
T ss_pred             ECCCCeEeEEEEEEEEec
Confidence            9987   33456665543

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.55  E-value=1.8e-15  Score=113.39  Aligned_cols=126  Identities=16%  Similarity=0.228  Sum_probs=85.2

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cceee--e-------c--CCc----------eE--------EEe
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQYQ--I-------D--NQD----------FV--------VSQ   66 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~~--~-------~--~~~----------~v--------~~g   66 (167)
                      |.++.+.+|+++.|.|.+.+.+.+   .+.|+|++ +..+.  .       .  ..|          .+        .+|
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~---~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   82 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKN---FAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEA   82 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGS---CCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCS
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCC---eEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCE
Confidence            778899999999999998877643   69998853 22220  0       0  011          11        279


Q ss_pred             eeEEEecC-------------eEE-------------------EeCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEe
Q psy12724         67 SYTVNIMD-------------EHV-------------------LKGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVD  113 (167)
Q Consensus        67 ~y~c~~~~-------------~~v-------------------~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~  113 (167)
                      .|.|.+.+             ..|                   .+|+++.|.|.+.+.  .|. |.++|+||+ ..+...
T Consensus        83 ~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~--~p~~~~v~W~k~g-~~~~~~  159 (212)
T 1nfd_E           83 AYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDF--YPGSATVTWKANG-ATINDG  159 (212)
T ss_dssp             EEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEE--BSSCCEEEEEETT-EEECSS
T ss_pred             EEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEee--ECCccEEEEEECC-eEcCCC
Confidence            99998862             011                   248899999999753  244 789999997 455321


Q ss_pred             ee-----ecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        114 MT-----ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       114 ~~-----~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..     ...++ |..  .+.|.|.+++.+|+ |.|+|.|.|..
T Consensus       160 ~~~~~~~~~~~~-~~~--~s~L~i~~~~~~d~-G~Y~C~a~n~~  199 (212)
T 1nfd_E          160 VKTTKPSKQGQN-YMT--SSYLSLTADQWKSH-NRVSCQVTHEG  199 (212)
T ss_dssp             CBCCCCBCSSSC-EEE--EEBCCEEHHHHHTC-SCEEEEEECTT
T ss_pred             eecCCceecCCC-ceE--EEEEEEchhhcCCC-CeEEEEEEeCC
Confidence            10     00122 322  25699999999998 99999999986

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.55  E-value=4.1e-15  Score=99.58  Aligned_cols=70  Identities=19%  Similarity=0.363  Sum_probs=54.9

Q ss_pred             EEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcceEEEeeecCc
Q psy12724         77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQCRTKHRLT  153 (167)
Q Consensus        77 v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~C~a~n~~~  153 (167)
                      +.+|+++.|.|.+.    .|.|.++|+||+ ..+.      .+.++.+..+|   .|.|.+++.+|+ |.|+|.|.|.. 
T Consensus        18 ~~~g~~v~l~C~v~----~p~~~v~W~k~g-~~i~------~~~~~~i~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~~-   84 (91)
T 2lvc_A           18 AITSECVMLACEVD----REDAPVRWYKDG-QEVE------ESDFVVLENEGPHRRLVLPATQPSDG-GEFQCVAGDEC-   84 (91)
T ss_dssp             CCTTCCEEEEEECS----CTTSCCEEEETT-SCCC------CCSSCEEEEETTEEEEEESSCCGGGC-SEEEEECSSCE-
T ss_pred             EECCCcEEEEEEEC----CCCcEEEEEECC-EEee------eeeeeeEEecCCeEEEEeCCCChhhc-EEEEEEEcceE-
Confidence            45799999999984    277789999998 5664      34566666555   699999999999 99999999863 


Q ss_pred             ceEEEe
Q psy12724        154 GETRLS  159 (167)
Q Consensus       154 ~~~~l~  159 (167)
                      ..+.|+
T Consensus        85 ~~~~lt   90 (91)
T 2lvc_A           85 AYFTVT   90 (91)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            445554

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.55  E-value=2e-14  Score=112.99  Aligned_cols=121  Identities=14%  Similarity=0.093  Sum_probs=81.6

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee-------cC-Cc--eE-------EEeeeEEEecC
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI-------DN-QD--FV-------VSQSYTVNIMD   74 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~-------~~-~~--~v-------~~g~y~c~~~~   74 (167)
                      .+...|. ..|.+|+++.|.|.+.+. .   +.+.|+|++......       .. ..  ..       .+|.|+|.+.+
T Consensus         9 ~i~~~P~-~~V~~G~~VtL~C~~~~~-~---~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~   83 (257)
T 1b6u_A            9 SLLAHPG-PLVKSEETVILQCWSDVR-F---QHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSV   83 (257)
T ss_dssp             EECCBSC-SEEESSCCEEEEEEESSC-C---SEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEEC
T ss_pred             EEEEcCC-CEecCCCCEEEEEecCCC-C---cEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEec
Confidence            3455565 678999999999999743 2   469999986543210       01 01  11       27999998631


Q ss_pred             --------------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceE
Q psy12724         75 --------------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY  122 (167)
Q Consensus        75 --------------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~  122 (167)
                                                      ..+.+|++++|.|.+.+    +.+.+.|+||+. .+...      .++
T Consensus        84 ~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~~~----~~~~~~w~k~g~-~~~~~------~~~  152 (257)
T 1b6u_A           84 THSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRS----SYDMYHLSREGE-AHERR------FSA  152 (257)
T ss_dssp             SSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEECSS----CCSEEEEEETTS-SCEEC------CBC
T ss_pred             cCCCccccccCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEeCCC----CCcEEEEEECCc-ccCcc------ccc
Confidence                                            01357999999999874    236789999984 54321      111


Q ss_pred             EEc----cCCeEEEeecCcCCCCcceEEEeeec
Q psy12724        123 LVL----PSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus       123 ~~~----~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      ...    .++.|.|.+++  |+ |.|+|.|.|.
T Consensus       153 ~~~~~~~~~~~l~I~~v~--D~-G~Y~C~a~~~  182 (257)
T 1b6u_A          153 GPKVNGTFQADFPLGPAT--HG-GTYRCFGSFR  182 (257)
T ss_dssp             BCCSSSCCBEEEEEEECC--SC-EEEEEEEECS
T ss_pred             ccccCCceeEEEEecccc--cC-EEEEEEEEcC
Confidence            111    25689999999  98 9999999974

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.55  E-value=7.2e-14  Score=105.04  Aligned_cols=129  Identities=22%  Similarity=0.290  Sum_probs=82.8

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cceee--e-------c--CCc----------eE--------EEe
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQYQ--I-------D--NQD----------FV--------VSQ   66 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~~--~-------~--~~~----------~v--------~~g   66 (167)
                      |.++.+.+|+++.|.|.+.+.+.+ .+.+.|+|++ +..+.  .       .  ..|          .+        .+|
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   85 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIG-NNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEA   85 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGG-GSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCC-CCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCE
Confidence            778999999999999995443311 2479999854 21110  0       0  001          11        279


Q ss_pred             eeEEEecCe------------E---------E---------EeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEe-e
Q psy12724         67 SYTVNIMDE------------H---------V---------LKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVD-M  114 (167)
Q Consensus        67 ~y~c~~~~~------------~---------v---------~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~-~  114 (167)
                      .|.|.+.+.            .         +         ..|+++.|.|.+.+.  .|.| .++|+||+ ..+... .
T Consensus        86 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~--~P~~~~v~W~k~g-~~~~~~~~  162 (216)
T 2xzc_L           86 DYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNF--YPREAKVQWKVDN-ALQSGNSQ  162 (216)
T ss_dssp             EEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEE--BSSCCEEEEEETT-EECCSSEE
T ss_pred             EEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeE--cCCceEEEEEECC-eecCCCee
Confidence            999987431            0         1         138899999999753  3554 89999997 454211 0


Q ss_pred             -----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        115 -----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       115 -----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                           ....++.|.+.  ..|.|.+++.+|+ |.|+|.|.|..
T Consensus       163 ~~~~~~~~~~g~~~~~--s~L~i~~~~~~d~-g~Y~C~a~n~~  202 (216)
T 2xzc_L          163 ESVTEQDSKDSTYSLS--STLTLSKADYEKH-KVYACEVTHQG  202 (216)
T ss_dssp             EEECCCCTTTCCEEEE--EEEEEEHHHHTTC-CEEEEEEECTT
T ss_pred             EecCcccCCCCCEEEE--EEEEECHHHhCCC-CcEEEEEEcCC
Confidence                 00111222221  2699999999998 99999999986

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.55  E-value=1.2e-14  Score=114.66  Aligned_cols=126  Identities=17%  Similarity=0.255  Sum_probs=83.2

Q ss_pred             EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee--------------c-CCc-----------eE--------E
Q psy12724         19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI--------------D-NQD-----------FV--------V   64 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~--------------~-~~~-----------~v--------~   64 (167)
                      ++.|++|+++.|.|.+.+...  .+.|+|+|+++.....              . ..|           .+        .
T Consensus         8 ~vtv~~G~~v~L~C~v~~~~~--~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D   85 (308)
T 4fom_A            8 HVTAVWGKNVSLKCLIEVNET--ITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSD   85 (308)
T ss_dssp             SCEEETTSCEEECCBCCCSSC--EEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGG
T ss_pred             EeEEEcCCcEEEEEEecCCCC--CcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHH
Confidence            578999999999999875443  3579999875432100              0 000           11        2


Q ss_pred             EeeeEEEecC----------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeee
Q psy12724         65 SQSYTVNIMD----------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTE  116 (167)
Q Consensus        65 ~g~y~c~~~~----------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~  116 (167)
                      +|.|+|.+.+                            ..+..|+++.|.|.+.+  +.|.|.++|+|++. .+......
T Consensus        86 ~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~--g~P~~~i~W~~~~~-~~~~~~~~  162 (308)
T 4fom_A           86 SGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAAT--GKPVAHIDWEGDLG-EMESTTTS  162 (308)
T ss_dssp             CEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEE--EBSCCEEEECCCSS-BCCEEEEE
T ss_pred             CEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecC--CcCCceEEEEECCc-ccccccce
Confidence            6999998732                            01125788999998642  56999999999984 54321100


Q ss_pred             cCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        117 STDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       117 ~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ...+.+..  .+.|.|.+++.+|+ |.|+|.|.|..
T Consensus       163 ~~~~~~~~--~s~l~i~~~~~~d~-g~Y~C~a~n~~  195 (308)
T 4fom_A          163 FPNETATI--ISQYKLFPTRFARG-RRITCVVKHPA  195 (308)
T ss_dssp             CTTSCEEE--EEEEEECCCGGGTT-CEEEEEEECTT
T ss_pred             eeeecccc--cccceEEeeeecCC-ccEEEEEEccC
Confidence            11111211  24699999999999 99999999975

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.54  E-value=3.2e-14  Score=113.32  Aligned_cols=131  Identities=13%  Similarity=0.179  Sum_probs=88.5

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCC-CCCcceeeEEeeCCCce---eee-------------------cCCceE-----
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSF-VSDHLDVVSWADTDGGQ---YQI-------------------DNQDFV-----   63 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~-~~~~~~~i~W~k~~~~~---~~~-------------------~~~~~v-----   63 (167)
                      .+...++++.+.+|+++.|.|.+.+. |.   +.|.|+|++...   +..                   .....+     
T Consensus         5 ~v~~~p~~~~v~~G~~v~L~C~~~~~~p~---~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v   81 (327)
T 2wng_A            5 QVIQPDKSVSVAAGESAILHCTVTSLIPV---GPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNI   81 (327)
T ss_dssp             CEECCCSEEEEETTSCEEECCEESCCCSC---CCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSC
T ss_pred             EEEcCCCceEEecCCcEEEEEEccCcCCC---ceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccC
Confidence            35677889999999999999999887 43   479999986431   111                   000011     


Q ss_pred             ---EEeeeEEEecCe-------------------------------EEEeCCcEEEEeeeCCccCCcce--eEEEEeCCC
Q psy12724         64 ---VSQSYTVNIMDE-------------------------------HVLKGNSAVLKCHIPSFVADYVA--VESWISDQG  107 (167)
Q Consensus        64 ---~~g~y~c~~~~~-------------------------------~v~~G~~a~l~C~~~~~~~~p~p--~i~W~k~~~  107 (167)
                         .+|.|+|.+.+.                               .+.+|+++.|.|.+.+.   |.|  .++|+||+ 
T Consensus        82 ~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~---p~~~~~v~W~k~g-  157 (327)
T 2wng_A           82 TPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGF---SPRDITLKWFKNG-  157 (327)
T ss_dssp             CGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEE---BSSCCEEEEEETT-
T ss_pred             ccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCc---cCCCcEEEEEECC-
Confidence               279999986321                               12469999999999854   544  89999997 


Q ss_pred             eeeEEee---e-ecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        108 EELFVDM---T-ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       108 ~~l~~~~---~-~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..+....   . ...++.|.+  ...|.|.....+|+ |.|+|.|.|..
T Consensus       158 ~~l~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~d~~-g~Y~C~a~n~~  203 (327)
T 2wng_A          158 NELSDFQTNVDPVGESVSYSI--HSTAKVVLTREDVH-SQVICEVAHVT  203 (327)
T ss_dssp             EECCCEEEEEECSSCCSCEEE--EEEEEEECCTTGGG-CEEEEEEECTT
T ss_pred             EEccccccccccccCCCceEE--EEEEEEechhcCcC-ceEEEEEeccc
Confidence            5553211   0 001122322  23588888888888 99999999975

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.54  E-value=1.1e-14  Score=111.72  Aligned_cols=132  Identities=14%  Similarity=0.126  Sum_probs=79.6

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCc--ceeeEEeeCCCcee-----e----------ecCCc-----------eE---
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDH--LDVVSWADTDGGQY-----Q----------IDNQD-----------FV---   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~--~~~i~W~k~~~~~~-----~----------~~~~~-----------~v---   63 (167)
                      ..+.++.+.+|+++.|.|.+.+.+.+.  ...+.|+|++....     .          .+..+           .+   
T Consensus         8 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   87 (248)
T 3pv7_A            8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLP   87 (248)
T ss_dssp             STTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEES
T ss_pred             eCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeC
Confidence            345677899999999999997665420  12499998643211     0          00000           01   


Q ss_pred             -----EEeeeEEEecC------------------------eEEEeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEE-
Q psy12724         64 -----VSQSYTVNIMD------------------------EHVLKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFV-  112 (167)
Q Consensus        64 -----~~g~y~c~~~~------------------------~~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~-  112 (167)
                           .+|.|+|.+.+                        ..+..|+.+.|.|.+.+  ..|.| .++|+||+. .+.. 
T Consensus        88 ~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~~g--~~P~pi~v~W~k~g~-~l~~~  164 (248)
T 3pv7_A           88 GIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSG--FYPEAINITWEKQTQ-KFPHP  164 (248)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC--------CEEEEEEEE--EBSSCCEEEEEEECS-SSCSC
T ss_pred             CCCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecCCccccCCCcEEEEEEcc--EECCCeEEEEEECCc-cCCCc
Confidence                 27999998732                        11245888999999975  14888 999999973 2210 


Q ss_pred             ----------eeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        113 ----------DMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       113 ----------~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                                ......++.|.+  ...|.|.....+|. |.|+|.|.|..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~-g~YtC~a~n~~  211 (248)
T 3pv7_A          165 IEISEDVITGPTIKNMDGTFNV--TSCLKLNSSQEDPG-TVYQCVVRHAS  211 (248)
T ss_dssp             EEECTTEEEEEEEECTTSCEEE--EEEEECC--CCCTT-CEEEEEEECTT
T ss_pred             cccccceeecccEECCCCCEEE--EEEEEEcCccccCC-CEEEEEEECCC
Confidence                      000112333333  24689999999998 99999999976

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.54  E-value=1.7e-14  Score=99.00  Aligned_cols=79  Identities=16%  Similarity=0.205  Sum_probs=61.6

Q ss_pred             EecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcceEEE
Q psy12724         71 NIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        71 ~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~C~  147 (167)
                      .+.+..+.+|+++.|.|.+.   ++|.|.++|+|++ ..+.      ...|+.+..   ++.|.|.+++.+|+ |.|+|.
T Consensus        13 ~~~~~~v~~G~~v~l~C~~~---g~p~p~i~W~k~~-~~~~------~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~   81 (114)
T 2cqv_A           13 FPEDQKVRAGESVELFGKVT---GTQPITCTWMKFR-KQIQ------ESEHMKVENSENGSKLTILAARQEHC-GCYTLL   81 (114)
T ss_dssp             CCCSEEEETTCCEEEEEEEE---SSSSCEEEEEESS-SBCC------CSSSEEEEECSSEEEEEETTCCTTTC-EEEEEE
T ss_pred             CCCCeEEeCCCeEEEEEEEE---cCCCCEEEEEECC-EECc------CCCCEEEEEcCCEEEEEECCCChhcC-EEEEEE
Confidence            34567889999999999998   4599999999998 4553      244666553   34799999999999 999999


Q ss_pred             eeecC---cceEEEee
Q psy12724        148 TKHRL---TGETRLSA  160 (167)
Q Consensus       148 a~n~~---~~~~~l~~  160 (167)
                      |.|..   +..+.|.+
T Consensus        82 a~N~~g~~~~~~~l~V   97 (114)
T 2cqv_A           82 VENKLGSRQAQVNLTV   97 (114)
T ss_dssp             EECSSCEEECCEEEEE
T ss_pred             EEECCCcEEEEEEEEE
Confidence            99987   33445554

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.54  E-value=1.3e-14  Score=98.40  Aligned_cols=82  Identities=24%  Similarity=0.363  Sum_probs=63.1

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcce
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSY  144 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y  144 (167)
                      +...+.+..+.+|+++.|.|.+.+   .|.| ++|+|++ ..+.      ...|+.+..+|   .|.|.+++.+|+ |.|
T Consensus        11 ~~~~~~~~~v~~G~~v~l~C~~~~---~~~~-v~W~k~g-~~~~------~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y   78 (106)
T 2dlt_A           11 VLQDIADLTVKAAEQAVFKCEVSD---EKVT-GKWYKNG-VEVR------PSKRITISHVGRFHKLVIDDVRPEDE-GDY   78 (106)
T ss_dssp             EEECCCCEEEESSCCEECCCEESC---SSCE-EEEEESS-CBCC------CCSSCEEEEETTEEEEEESSCCTTTC-SCE
T ss_pred             EecCCCCeEEeCCCeEEEEEEEcC---CCcc-eEEEcCC-EECc------CCCCEEEEEeCCEEEEEECCCCcCCC-EEE
Confidence            444556788999999999999984   4777 8999998 4553      24566666555   799999999999 999


Q ss_pred             EEEeeecC-cceEEEeee
Q psy12724        145 QCRTKHRL-TGETRLSAT  161 (167)
Q Consensus       145 ~C~a~n~~-~~~~~l~~~  161 (167)
                      +|.|.|.. +..+.|.+.
T Consensus        79 ~C~a~n~~~~~~~~l~V~   96 (106)
T 2dlt_A           79 TFVPDGYALSLSAKLNFL   96 (106)
T ss_dssp             EEEEETSCCCCCBCEEEE
T ss_pred             EEEEccCCceEEEEEEEE
Confidence            99999973 334455554

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.54  E-value=2.4e-13  Score=106.25  Aligned_cols=136  Identities=13%  Similarity=0.218  Sum_probs=88.4

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCC---cceeeEEeeCC-Cce---eee--------cCCc----------eE---
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSD---HLDVVSWADTD-GGQ---YQI--------DNQD----------FV---   63 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~---~~~~i~W~k~~-~~~---~~~--------~~~~----------~v---   63 (167)
                      .+...|.++.+.+|+++.|.|.+.+.+..   ..+.+.|+|++ +..   +..        ...|          .+   
T Consensus         7 ~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~   86 (264)
T 2gjj_A            7 VLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIG   86 (264)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEES
T ss_pred             ceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEEC
Confidence            35667888999999999999999877620   02579999853 221   110        0011          11   


Q ss_pred             -----EEeeeEEEecC---------------------------------------------eEEEeCCcEEEEeeeCCcc
Q psy12724         64 -----VSQSYTVNIMD---------------------------------------------EHVLKGNSAVLKCHIPSFV   93 (167)
Q Consensus        64 -----~~g~y~c~~~~---------------------------------------------~~v~~G~~a~l~C~~~~~~   93 (167)
                           .+|.|.|.+.+                                             ..+.+|+++.|.|.+.+. 
T Consensus        87 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~-  165 (264)
T 2gjj_A           87 SVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGY-  165 (264)
T ss_dssp             SCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESS-
T ss_pred             CCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCC-
Confidence                 26999997632                                             123469999999999743 


Q ss_pred             CCc--ceeEEEEeCC-Cee---eEEeee--------ecCCceEEEcc-----CCeEEEeecCcCCCCcceEEEeeec
Q psy12724         94 ADY--VAVESWISDQ-GEE---LFVDMT--------ESTDGKYLVLP-----SGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        94 ~~p--~p~i~W~k~~-~~~---l~~~~~--------~~~~~r~~~~~-----~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                        |  .+.+.|+|++ +..   +.....        +...+|+.+..     .+.|.|.+++.+|+ |.|.|.|.|.
T Consensus       166 --~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~a~n~  239 (264)
T 2gjj_A          166 --SFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDS-ADYYCVRSGN  239 (264)
T ss_dssp             --CGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEEECS
T ss_pred             --ccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccC-EEEEEEEecC
Confidence              4  3789999963 111   111000        00135665532     24799999999999 9999999995

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.54  E-value=5.6e-14  Score=118.69  Aligned_cols=129  Identities=22%  Similarity=0.303  Sum_probs=86.5

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cceee---e-c-------CCc----------eE--------
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQYQ---I-D-------NQD----------FV--------   63 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~~---~-~-------~~~----------~v--------   63 (167)
                      ..+|.++.|.+|+++.|.|.+.+.+.   +.+.|+|++ +..+.   . +       ..|          .+        
T Consensus         4 ~~~p~~~~v~~G~~v~L~C~~~~~~~---~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   80 (523)
T 2rcj_C            4 LTQPPSASGTPGQRVTISCTGTSSGS---ITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAE   80 (523)
T ss_pred             cccCCceEEecCCcEEEEEEEeccCC---ceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChh
Confidence            34577899999999999999987654   479999975 22110   0 0       001          11        


Q ss_pred             EEeeeEEEecCe--------------------------------EEEeCCcEEEEeeeCCccCCcc--eeEEEEeCCCee
Q psy12724         64 VSQSYTVNIMDE--------------------------------HVLKGNSAVLKCHIPSFVADYV--AVESWISDQGEE  109 (167)
Q Consensus        64 ~~g~y~c~~~~~--------------------------------~v~~G~~a~l~C~~~~~~~~p~--p~i~W~k~~~~~  109 (167)
                      .+|.|+|.+.+.                                .+.+|+++.|.|.+.+.   |.  +.++|+||+ ..
T Consensus        81 D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~---~p~~~~v~W~k~g-~~  156 (523)
T 2rcj_C           81 DESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDF---YPGAVTVAWKADG-SP  156 (523)
T ss_pred             hCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccc---cCCceEEEEecCC-CC
Confidence            279999987531                                11358999999999853   43  489999997 45


Q ss_pred             eEEeee-----ecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        110 LFVDMT-----ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       110 l~~~~~-----~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.....     ...++.|.+  ...|.|.+++.+|+ |.|+|.|.|..
T Consensus       157 l~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d~-G~Y~C~a~n~~  201 (523)
T 2rcj_C          157 VKAGVETTKPSKQSNNKYAA--SSYLSLTPEQWKSH-RSYSCQVTHEG  201 (523)
T ss_pred             CCCceEeccccccCCCCEEE--EEEEEEechhcCCC-ceEEEEEEecC
Confidence            532100     001112211  13699999999999 99999999976

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.53  E-value=2.9e-14  Score=94.98  Aligned_cols=68  Identities=24%  Similarity=0.431  Sum_probs=56.4

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      +.+..+.+|+++.|.|.+.+   +| |.++|+|++ ..+.      .++|+.+. ++.|.|.+++.+|+ |.|+|.|.|.
T Consensus        16 ~~~~~v~~G~~v~l~C~~~g---~p-p~i~W~k~g-~~~~------~~~~~~~~-~~~L~i~~~~~~D~-G~Y~C~a~n~   82 (95)
T 2ckn_A           16 VESLLVHPGDLLQLRCRLRD---DV-QSINWLRDG-VQLV------ESNRTRIT-GEEVEVRDSIPADS-GLYACVTSSP   82 (95)
T ss_dssp             BCCEEECTTSCEEEECCEES---SC-CEEEEEBTT-BCCC------CCSSEEEC-SSEEEESSCCGGGS-EEEEEEEEET
T ss_pred             cceEEEcCCCeEEEEEECCC---CC-CceEEEECC-EecC------CCCCEEEe-CCEEEECCCChHHC-EEEEEEeccC
Confidence            45677889999999999974   47 799999987 4553      34566654 78999999999999 9999999998


Q ss_pred             C
Q psy12724        152 L  152 (167)
Q Consensus       152 ~  152 (167)
                      .
T Consensus        83 ~   83 (95)
T 2ckn_A           83 S   83 (95)
T ss_dssp             T
T ss_pred             C
Confidence            6

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.53  E-value=2.8e-14  Score=120.57  Aligned_cols=125  Identities=16%  Similarity=0.240  Sum_probs=82.8

Q ss_pred             EEEEeCCcEEEEeecCCC-CCCcceeeEEeeCCCceee--------ecCC------ceE-----EEeeeEEEecC-----
Q psy12724         20 VFVIKGNAAVFKCNLPSF-VSDHLDVVSWADTDGGQYQ--------IDNQ------DFV-----VSQSYTVNIMD-----   74 (167)
Q Consensus        20 ~~v~~G~~~~l~C~a~~~-~~~~~~~i~W~k~~~~~~~--------~~~~------~~v-----~~g~y~c~~~~-----   74 (167)
                      ..+.+|+++.|.|.+.+. |.+ + .|+|+|++...-.        .++.      +.+     ..|.|+|.+.+     
T Consensus       229 ~~~~~G~~~~l~C~~~g~~P~p-~-~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~dG~Y~C~a~n~~g~~  306 (523)
T 2rcj_C          229 SKSTSGGTAALGCLVKDYFPQP-V-TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNT  306 (523)
T ss_pred             cccccCCceEEEEEEeceeCCC-e-EEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCCceEEEEEEeCCCCc
Confidence            456899999999999887 432 1 6999998653110        1111      000     02999998743     


Q ss_pred             ---------------------e-EEEeCCcEEEEeeeCCcc-CCcceeEEEEeCCCeeeEEeeeecCCceEEEccC----
Q psy12724         75 ---------------------E-HVLKGNSAVLKCHIPSFV-ADYVAVESWISDQGEELFVDMTESTDGKYLVLPS----  127 (167)
Q Consensus        75 ---------------------~-~v~~G~~a~l~C~~~~~~-~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~----  127 (167)
                                           . .+.+|+++.|.|.+.+.. .+|.+.++|+||+ ..+...    .........+    
T Consensus       307 ~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g-~~l~~~----~~~~~~~~~~g~~~  381 (523)
T 2rcj_C          307 KVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDG-VQVHNA----KTKPREQQYNSTYR  381 (523)
T ss_pred             ceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECC-eEccCC----ccCCceecCCCcEE
Confidence                                 0 145699999999997641 1234699999998 455321    1111111222    


Q ss_pred             --CeEEEeecCcCCCCcceEEEeeecC
Q psy12724        128 --GELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       128 --g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                        +.|.|.++..+|+ |.|+|.|.|..
T Consensus       382 ~~s~L~i~~~~~~d~-G~Y~C~a~n~~  407 (523)
T 2rcj_C          382 VVSVLTVLHQNWLDG-KEYKCKVSNKA  407 (523)
T ss_pred             EEEEEEECHHHhcCC-CeEEEEEeCCC
Confidence              3599999999999 99999999975

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.53  E-value=9.5e-14  Score=110.10  Aligned_cols=133  Identities=15%  Similarity=0.261  Sum_probs=83.7

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCC-CcceeeEEeeCCCce--------------eee--------------cCCceE
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVS-DHLDVVSWADTDGGQ--------------YQI--------------DNQDFV   63 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~-~~~~~i~W~k~~~~~--------------~~~--------------~~~~~v   63 (167)
                      +...+.++.+.+|+++.|.|.+.+... ...+.+.|+|++...              +..              +....+
T Consensus        17 ~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I   96 (331)
T 3u83_A           17 VVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRL   96 (331)
T ss_dssp             ----CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEEE
T ss_pred             eEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEEE
Confidence            556677889999999999999987522 234679999953210              000              000111


Q ss_pred             ------EEeeeEEEec----------------------------CeEEEeC---CcEEEEee-eCCccCCcceeEEEEeC
Q psy12724         64 ------VSQSYTVNIM----------------------------DEHVLKG---NSAVLKCH-IPSFVADYVAVESWISD  105 (167)
Q Consensus        64 ------~~g~y~c~~~----------------------------~~~v~~G---~~a~l~C~-~~~~~~~p~p~i~W~k~  105 (167)
                            ..|.|+|.+.                            +..+.+|   +.+.|.|. +.   +.|.|.++|+|+
T Consensus        97 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~---~~p~~~i~W~~~  173 (331)
T 3u83_A           97 SRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSAN---GKPPSVVSWETR  173 (331)
T ss_dssp             CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEE---EBSCCEEEEEES
T ss_pred             cccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecC---CcCCceEEEEcC
Confidence                  2799999741                            0123467   67999998 55   458899999996


Q ss_pred             CC-eeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        106 QG-EELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       106 ~~-~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +. ....... ...++.+.+  ...|.|.++..+|+ |.|+|.|.|..
T Consensus       174 ~~~~~~~~~~-~~~~~~~~~--~~~L~i~~~~~~d~-G~Y~C~a~n~~  217 (331)
T 3u83_A          174 LKGEAEYQEI-RNPNGTVTV--ISRYRLVPSREAHQ-QSLACIVNYHM  217 (331)
T ss_dssp             SCCEEEEEEE-ECTTSCEEE--EEEEEECCCGGGTT-CEEEEEEEETT
T ss_pred             CCCcccccee-ECCCCcEEE--EEEEEEEeccccCC-CEEEEEEecCC
Confidence            42 1211111 112333333  24688889999999 99999999986

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.52  E-value=2.5e-13  Score=105.89  Aligned_cols=136  Identities=15%  Similarity=0.227  Sum_probs=88.7

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCC--cceeeEEeeCC-Cce---eee--------cCCc----------eE-----
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSD--HLDVVSWADTD-GGQ---YQI--------DNQD----------FV-----   63 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~--~~~~i~W~k~~-~~~---~~~--------~~~~----------~v-----   63 (167)
                      +...|.++.|.+|+++.|.|.+.+.+..  ..+.+.|+|++ +..   +..        ...|          .+     
T Consensus        18 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   97 (268)
T 1x9q_A           18 MTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRV   97 (268)
T ss_dssp             EEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred             EEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCC
Confidence            5667888999999999999999877620  01479999864 221   110        0011          11     


Q ss_pred             ---EEeeeEEEecC-------------------------------------------------eEEEeCCcEEEEeeeCC
Q psy12724         64 ---VSQSYTVNIMD-------------------------------------------------EHVLKGNSAVLKCHIPS   91 (167)
Q Consensus        64 ---~~g~y~c~~~~-------------------------------------------------~~v~~G~~a~l~C~~~~   91 (167)
                         .+|.|.|.+.+                                                 ..+.+|+++.|.|.+.+
T Consensus        98 ~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~  177 (268)
T 1x9q_A           98 EAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSG  177 (268)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEES
T ss_pred             ChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecC
Confidence               16999997632                                                 12345999999999974


Q ss_pred             ccCCc-ceeEEEEeCC-Ceee---EEee----------eecCCceEEEccC-----CeEEEeecCcCCCCcceEEEeeec
Q psy12724         92 FVADY-VAVESWISDQ-GEEL---FVDM----------TESTDGKYLVLPS-----GELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        92 ~~~~p-~p~i~W~k~~-~~~l---~~~~----------~~~~~~r~~~~~~-----g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      .  .| .+.+.|+|++ +..+   ....          .+...+|+.+..+     +.|.|.+++.+|+ |.|.|.|.|.
T Consensus       178 ~--~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~a~~~  254 (268)
T 1x9q_A          178 F--TFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDT-GIYYCTGASY  254 (268)
T ss_dssp             S--CGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGC-EEEEEEEEET
T ss_pred             c--cccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHC-EEEEEEEccC
Confidence            3  12 4789999853 1221   1100          0012467776532     4799999999999 9999999985

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=2e-14  Score=95.97  Aligned_cols=76  Identities=26%  Similarity=0.459  Sum_probs=59.1

Q ss_pred             eeeEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceE
Q psy12724         66 QSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        66 g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~  145 (167)
                      +.+.-.+.+..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.      ...+.....++.|.|.+++.+|+ |.|+
T Consensus        12 P~~~~~~~~~~v~~G~~v~l~C~~~g---~p~p~v~W~~~g-~~~~------~~~~~~~~~~~~L~i~~v~~~D~-G~Y~   80 (99)
T 2yr3_A           12 PSFSSVLKDCAVIEGQDFVLQCSVRG---TPVPRITWLLNG-QPIQ------YARSTCEAGVAELHIQDALPEDH-GTYT   80 (99)
T ss_dssp             EEEEECCCCEEECTTCCEEEECEEEE---ESCCCCEEEESS-SBCS------SCCCEEETTEEEEEECSCCTTCC-BCEE
T ss_pred             CceeecCCCCEEeCCCeEEEEEEEee---eCCCeEEEEECC-EECc------ccceEeeCCeEEEEECCCChhhC-EEEE
Confidence            33445556778899999999999974   588999999997 4542      12333333446899999999999 9999


Q ss_pred             EEeeecC
Q psy12724        146 CRTKHRL  152 (167)
Q Consensus       146 C~a~n~~  152 (167)
                      |.|.|..
T Consensus        81 C~a~N~~   87 (99)
T 2yr3_A           81 CLAENAL   87 (99)
T ss_dssp             EEEECSS
T ss_pred             EEEEECC
Confidence            9999987

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.52  E-value=2.2e-14  Score=97.86  Aligned_cols=85  Identities=19%  Similarity=0.275  Sum_probs=59.5

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcc---eeEEEEeCCCeeeEEeeeecCCceEEEc---------cCCeEEEeec
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYV---AVESWISDQGEELFVDMTESTDGKYLVL---------PSGELHIRDV  135 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~---p~i~W~k~~~~~l~~~~~~~~~~r~~~~---------~~g~L~I~~v  135 (167)
                      |.-.+.+..+.+|++|+|.|.+.+   .|.   |.|+|+|++. .....   ..+.++.+.         .++.|.|+++
T Consensus         7 f~~~p~~~~v~~G~~v~L~C~~~g---~p~~~~p~v~W~k~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~I~~v   79 (108)
T 3cx2_A            7 FVMRPQDGEVTVGGSITFSARVAG---ASLLKPPVVKWFKGKW-VDLSS---KVGQHLQLHDSYDRASKVYLFELHITDA   79 (108)
T ss_dssp             CSBCCCCEEEETTCCEEEEEEEEC---C-CCSCCEEEEEETTT-EEGGG---GCBTTEEEEEEEETTTTEEEEEEEECSC
T ss_pred             EEeCCCcEEEeCCCCEEEEEEECC---CccCCCcEEEEccCCc-ccccc---cCCceEEEeeEEecccccceEEEEEecC
Confidence            444556778999999999999974   477   9999999862 21100   112344332         1457999999


Q ss_pred             CcCCCCcceEEEeeecC---cceEEEee
Q psy12724        136 GPEDGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                      +.+|+ |.|+|.|.|..   +..+.|.+
T Consensus        80 ~~~D~-G~Y~C~a~N~~G~~~~~~~L~V  106 (108)
T 3cx2_A           80 QPAFT-GSYRCEVSTKDKFDCSNFNLTV  106 (108)
T ss_dssp             CGGGC-EEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCccC-EEEEEEEecCCCceEEEEEEEE
Confidence            99999 99999999987   33445554

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.52  E-value=4.4e-14  Score=106.41  Aligned_cols=130  Identities=13%  Similarity=0.230  Sum_probs=84.1

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cceee----ec------------CCc------------eE--
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQYQ----ID------------NQD------------FV--   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~~----~~------------~~~------------~v--   63 (167)
                      .++..+.+.+|+++.|.|.+.+.+.+ .+.+.|+|++ +..+.    ..            ..|            .+  
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (219)
T 1c1e_H            5 VQSGPELKKPGETVKISCKASGYMFT-NYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQI   83 (219)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGG-GSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEE
T ss_pred             eCCCCeEecCCCcEEEEEEEeCcccc-cceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEE
Confidence            45677899999999999999876522 2579999874 32211    00            011            11  


Q ss_pred             ------EEeeeEEEecCe--------------E-------------------EEeCCcEEEEeeeCCccCCcce-eEEEE
Q psy12724         64 ------VSQSYTVNIMDE--------------H-------------------VLKGNSAVLKCHIPSFVADYVA-VESWI  103 (167)
Q Consensus        64 ------~~g~y~c~~~~~--------------~-------------------v~~G~~a~l~C~~~~~~~~p~p-~i~W~  103 (167)
                            .+|.|.|.+.+.              .                   +.+|+++.|.|.+.+.  .|.| .++|+
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~--~P~p~~v~W~  161 (219)
T 1c1e_H           84 NNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGY--FPEPVTVTWN  161 (219)
T ss_dssp             CSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEE--BSSCCEEEEG
T ss_pred             CCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccc--cCCCeEEEEE
Confidence                  169999986431              0                   1258999999999851  4888 99999


Q ss_pred             eCCCeeeEEeeee--cCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        104 SDQGEELFVDMTE--STDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       104 k~~~~~l~~~~~~--~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |++ ..+......  ...++|..  .+.|.| +....|. |.|+|.|.|..
T Consensus       162 ~~g-~~~~~~~~~~~~~~~~~~~--~s~L~i-~~~~~d~-g~Y~C~a~n~~  207 (219)
T 1c1e_H          162 SGS-LSSGVHTFPAVLQSDLYTL--SSSVTV-PSSPRPS-ETVTCNVAHPA  207 (219)
T ss_dssp             GGT-BCTTEEECCCEESSSCEEE--EEEEEE-ESSSTTT-SCCEEEEEEGG
T ss_pred             eCC-cccceEecCCcccCCeEEE--EEEEEE-ecccCCC-CEEEEEEEeCC
Confidence            997 332110000  01133432  246999 5555688 99999999987

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.52  E-value=2.7e-14  Score=106.86  Aligned_cols=127  Identities=20%  Similarity=0.306  Sum_probs=83.4

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Ccee--ee---------cCCc----------eE--------E
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQY--QI---------DNQD----------FV--------V   64 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~--~~---------~~~~----------~v--------~   64 (167)
                      ..+ ++.+.+|+++.|.|.+.  +.   +.+.|+|++ +..+  ..         ...|          .+        .
T Consensus         6 ~~~-~~~v~~G~~v~L~C~~~--~~---~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   79 (211)
T 3tv3_L            6 QPP-SASGSPGQSITISCTGT--SN---NFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDD   79 (211)
T ss_dssp             CCS-EEEECTTCEEEEEEECC--CS---SCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGG
T ss_pred             eCc-eEEEcCCCCEEEEEEEC--CC---CeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhH
Confidence            344 78999999999999998  32   479999842 1111  00         0011          11        1


Q ss_pred             EeeeEEEecCe------------EE-------------------EeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEe
Q psy12724         65 SQSYTVNIMDE------------HV-------------------LKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVD  113 (167)
Q Consensus        65 ~g~y~c~~~~~------------~v-------------------~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~  113 (167)
                      +|.|.|.+.+.            .|                   .+|+++.|.|.+.+. ..|.+.++|+||+ ..+...
T Consensus        80 ~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~-~p~~~~v~W~k~g-~~l~~~  157 (211)
T 3tv3_L           80 EAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDF-YPGAVTVAWKADS-SPVKAG  157 (211)
T ss_dssp             CEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEE-BSSCCEEEEEETT-EEECTT
T ss_pred             CEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeee-cCCCeEEEEEECC-eecCCC
Confidence            79999987430            01                   149999999999753 1246789999997 555210


Q ss_pred             e-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        114 M-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       114 ~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .     ....++.|.+.  ..|.|.++..+|+ |.|+|.|.|..
T Consensus       158 ~~~~~~~~~~~~~~~~~--s~L~i~~~~~~d~-g~Y~C~v~~~~  198 (211)
T 3tv3_L          158 VETTTPSKQSNNKYAAS--SYLSLTPEQWKSH-RSYSCQVTHEG  198 (211)
T ss_dssp             EEECCCEECTTSSEEEE--EEEEECHHHHHHS-SCEEEEEEETT
T ss_pred             cccCCceECCCCCEEEE--EEEEEcHHHhCCC-CeEEEEEEECC
Confidence            0     00123334332  4699999999998 99999999986

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.52  E-value=9e-14  Score=104.19  Aligned_cols=130  Identities=21%  Similarity=0.383  Sum_probs=83.5

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCC-CCCcceeeEEeeCC---Ccee--eecC-----------Cce----------E--
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSF-VSDHLDVVSWADTD---GGQY--QIDN-----------QDF----------V--   63 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~-~~~~~~~i~W~k~~---~~~~--~~~~-----------~~~----------v--   63 (167)
                      +...+ ++.|.+|+++.|.|.+.+. +.   +.+.|+|.+   ...+  ..+.           .|.          +  
T Consensus         4 v~~~p-~~~v~~G~~v~L~C~~~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I   79 (218)
T 3s96_B            4 LTQSS-SASFSLGASAKLTCTLNSQHST---YTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSI   79 (218)
T ss_dssp             EECCS-EEEEETTSCEEEEEEECGGGTT---CCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEE
T ss_pred             EEeCC-cEEECCCCcEEEEEECCCCCCC---cEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEE
Confidence            34455 8899999999999999987 43   479999842   1110  0001           010          1  


Q ss_pred             ------EEeeeEEEecCe---------------EE-------------------EeCCcEEEEeeeCCccCCcce-eEEE
Q psy12724         64 ------VSQSYTVNIMDE---------------HV-------------------LKGNSAVLKCHIPSFVADYVA-VESW  102 (167)
Q Consensus        64 ------~~g~y~c~~~~~---------------~v-------------------~~G~~a~l~C~~~~~~~~p~p-~i~W  102 (167)
                            .+|.|.|.+.+.               .|                   ..|+++.|.|.+.+.  .|.| .++|
T Consensus        80 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~--~p~~~~v~W  157 (218)
T 3s96_B           80 SNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNF--SPSGVTVAW  157 (218)
T ss_dssp             SSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEE--BSSCCEEEE
T ss_pred             ccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcc--cCCCeEEEE
Confidence                  279999987321               11                   246789999999752  3666 8999


Q ss_pred             EeCCCeeeEEee----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        103 ISDQGEELFVDM----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       103 ~k~~~~~l~~~~----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +||+ ..+....    ....++.|.+  ...|.|.+...+|+ |.|+|.|.|..
T Consensus       158 ~k~g-~~l~~~~~~~~~~~~~~~~~~--~s~l~i~~~~~~d~-g~Y~C~a~n~~  207 (218)
T 3s96_B          158 KANG-TPITQGVDTSNPTKEGNKFMA--SSFLHLTSDQWRSH-NSFTCQVTHEG  207 (218)
T ss_dssp             EETT-EEC--------------CEEE--EEEEEEEHHHHHTC-SCEEEEEEETT
T ss_pred             EECC-EECcCceecCcccccCCcEEE--EEEEEEeHHHccCC-CeEEEEEEeCC
Confidence            9987 5553211    0001233433  23588999999998 99999999987

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.51  E-value=5.6e-14  Score=94.98  Aligned_cols=82  Identities=24%  Similarity=0.318  Sum_probs=56.5

Q ss_pred             EEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEE-EccCCeEEEeecCcCCCCcceEEE
Q psy12724         69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYL-VLPSGELHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        69 ~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~-~~~~g~L~I~~v~~~D~~G~Y~C~  147 (167)
                      .-.+.+..+.+|+++.|.|.+.   +.|.|.++|+|++ ..+.      ...++. ...++.|.|.+++.+|+ |.|+|.
T Consensus        14 ~~~~~~~~v~~G~~v~l~C~~~---g~p~p~i~W~~~~-~~~~------~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~   82 (108)
T 3kvq_A           14 TGNLENQTTSIGESIEVSCTAS---GNPPPQIMWFKDN-ETLV------EDSGIVLKDGNRNLTIRRVRKEDE-GLYTCQ   82 (108)
T ss_dssp             BSCCCCEEEETTCCEEEECBCC-------CCEEEEESS-SBCC------CBTTEEEETTTTEEEECSCCGGGC-EEEEEE
T ss_pred             ecCCCCeEEeCCCeEEEEEECc---CcCCCeEEEEECC-eEcc------cCCCeEEeCCCcEEEEeecCcccC-EEEEEE
Confidence            3344567889999999999997   4588999999997 4543      123333 33567899999999999 999999


Q ss_pred             eeecC---cceEEEeee
Q psy12724        148 TKHRL---TGETRLSAT  161 (167)
Q Consensus       148 a~n~~---~~~~~l~~~  161 (167)
                      |.|..   ...+.|.+.
T Consensus        83 a~n~~g~~~~~~~l~V~   99 (108)
T 3kvq_A           83 ACSVLGCAKVEAFFIIE   99 (108)
T ss_dssp             EC----CEEEEEEEEEE
T ss_pred             EEeCCCceEEEEEEEEe
Confidence            99986   334455553

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.51  E-value=1.4e-13  Score=105.44  Aligned_cols=132  Identities=15%  Similarity=0.221  Sum_probs=85.9

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC---------------CceeeecC--Cc-----------eE
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD---------------GGQYQIDN--QD-----------FV   63 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~---------------~~~~~~~~--~~-----------~v   63 (167)
                      .+...+..+.+.+|+++.|.|.+.+.+.   +.|.|+|..               +.......  .|           .+
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~---~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L   79 (246)
T 4dzb_B            3 VVSQHPSWVISKSGTSVKIECRSLDFQA---TTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTL   79 (246)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSSCC---CSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEE
T ss_pred             ccEECCcEEEEeCCCcEEEEeEecCCCc---eEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEE
Confidence            3566788899999999999999988754   479999821               11010000  01           11


Q ss_pred             --------EEeeeEEEecC--------------eEE----------------------EeCCcEEEEeeeCCccCCcce-
Q psy12724         64 --------VSQSYTVNIMD--------------EHV----------------------LKGNSAVLKCHIPSFVADYVA-   98 (167)
Q Consensus        64 --------~~g~y~c~~~~--------------~~v----------------------~~G~~a~l~C~~~~~~~~p~p-   98 (167)
                              .+|.|.|.+.+              ..|                      .+|+++.|.|.+.+.  .|.| 
T Consensus        80 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~--~p~~~  157 (246)
T 4dzb_B           80 TVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGF--YPDHV  157 (246)
T ss_dssp             EECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEE--BSSCE
T ss_pred             EECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccC--cCCce
Confidence                    27999999852              011                      128999999999754  1322 


Q ss_pred             eEEEEeCCCeeeEEeeeec----------CCceEEEccCCeEEEeecCcCC-CCcceEEEeeecC
Q psy12724         99 VESWISDQGEELFVDMTES----------TDGKYLVLPSGELHIRDVGPED-GYKSYQCRTKHRL  152 (167)
Q Consensus        99 ~i~W~k~~~~~l~~~~~~~----------~~~r~~~~~~g~L~I~~v~~~D-~~G~Y~C~a~n~~  152 (167)
                      .++|+||+ ..+.......          .++.|.+.  ..|.|.....+| . |.|+|.|.|..
T Consensus       158 ~v~W~k~g-~~l~~~~~~~~~~~~~~~~~~~g~~~~~--s~l~i~~~~~~d~~-g~YtC~v~~~~  218 (246)
T 4dzb_B          158 ELSWWVNG-KEVHSGVCTDPQPLKEQPALNDSRYALS--SRLRVSATFWQNPR-NHFRCQVQFYG  218 (246)
T ss_dssp             EEEEEETT-EEECTTEEECSSCEESSTTSTTCCEEEE--EEEEEEHHHHTCTT-CEEEEEEEECC
T ss_pred             EEEEEECC-EECCCCcccccccccccccCCCCCEEEE--EEEEECHHHhccCC-CeEEEEEEecC
Confidence            89999987 5553110000          12333332  248999999999 8 99999999986

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.50  E-value=6.9e-14  Score=115.08  Aligned_cols=134  Identities=19%  Similarity=0.301  Sum_probs=88.9

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCC-cceeeEEeeCC-Ccee---e-------ec-CCc----------eE------
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSD-HLDVVSWADTD-GGQY---Q-------ID-NQD----------FV------   63 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~-~~~~i~W~k~~-~~~~---~-------~~-~~~----------~v------   63 (167)
                      +...|.++.|.+|+++.|.|.+.+.+.+ ..+.+.|+|++ +..+   .       .. ..|          .+      
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   83 (438)
T 1qgc_4            4 LTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVE   83 (438)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCc
Confidence            4566888999999999999999877631 01369999964 2211   0       00 011          11      


Q ss_pred             --EEeeeEEEecCe----------------------EE-------EeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeE
Q psy12724         64 --VSQSYTVNIMDE----------------------HV-------LKGNSAVLKCHIPSFVADYVA-VESWISDQGEELF  111 (167)
Q Consensus        64 --~~g~y~c~~~~~----------------------~v-------~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~  111 (167)
                        .+|.|+|.+.+.                      .+       .+|+.+.|.|.+.+.  .|.| .++|+||+ ..+.
T Consensus        84 ~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~--~p~~~~v~W~k~g-~~~~  160 (438)
T 1qgc_4           84 ADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNF--YPKDINVKWKIDG-SERQ  160 (438)
T ss_dssp             GGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEE--BSSCEEEEEEETT-EEEC
T ss_pred             CcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccc--cCCCcEEEEEECC-EEcC
Confidence              279999987431                      01       138899999999752  4777 89999987 4543


Q ss_pred             Ee-e-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        112 VD-M-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       112 ~~-~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .. .     ....+++|..  .+.|.|.+++.+|+ |.|+|.|.|..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~-G~Y~C~a~n~~  204 (438)
T 1qgc_4          161 NGVLNSWTDQDSKDSTYSM--SSTLTLTKDEYERH-NSYTCEATHKT  204 (438)
T ss_dssp             TTEEEEEECCCTTTCCEEE--EEEEEEEHHHHHTC-CEEEEEEEETT
T ss_pred             CCceeccccccCCCCcEEE--EEEEEEeCcccCCC-CeEEEEEEecc
Confidence            11 0     0011223322  34799999999999 99999999986

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=5.8e-14  Score=95.59  Aligned_cols=73  Identities=14%  Similarity=0.340  Sum_probs=58.3

Q ss_pred             EEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc--CC--eEEEeecCcCCCCcceE
Q psy12724         70 VNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP--SG--ELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        70 c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~--~g--~L~I~~v~~~D~~G~Y~  145 (167)
                      ..+.+..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+..     ...++.+..  +|  .|.|.+++.+|+ |.|+
T Consensus        13 ~~~~~~~v~~G~~v~l~C~~~g---~p~p~v~W~k~g-~~~~~-----~~~~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~   82 (110)
T 2dm2_A           13 MKLKHYKIFEGMPVTFTCRVAG---NPKPKIYWFKDG-KQISP-----KSDHYTIQRDLDGTCSLHTTASTLDDD-GNYT   82 (110)
T ss_dssp             SCCCCEEEETTCCEEEEEEBCC---SSCCEEEEECSS-CBCCT-----TCSSEEEEECTTCEEEEEESSCCTTTC-SCCE
T ss_pred             ecCcCeEEeCCCeEEEEEEEEe---cCCCEEEEEECC-EECCC-----CCCeEEEEECCCcEEEEEECCCChhhC-EEEE
Confidence            3445678899999999999984   588999999997 45531     245665553  45  699999999999 9999


Q ss_pred             EEeeecC
Q psy12724        146 CRTKHRL  152 (167)
Q Consensus       146 C~a~n~~  152 (167)
                      |.|.|..
T Consensus        83 C~a~N~~   89 (110)
T 2dm2_A           83 IMAANPQ   89 (110)
T ss_dssp             EEEECTT
T ss_pred             EEEEECC
Confidence            9999987

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.50  E-value=7.4e-15  Score=111.45  Aligned_cols=129  Identities=19%  Similarity=0.268  Sum_probs=83.2

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Ccee---ee-------c-CCc----------eE--------EEe
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQY---QI-------D-NQD----------FV--------VSQ   66 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~---~~-------~-~~~----------~v--------~~g   66 (167)
                      |..+.+.+|+++.|.|.+.+.+.++ ..+.|+|++ +..+   ..       . ..|          .+        .+|
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~-~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G  104 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGS-NYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEA  104 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTT-SCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCS
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCC-CeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCE
Confidence            7888899999999999998765431 159999864 2111   00       0 011          11        179


Q ss_pred             eeEEEecCe-------------------------EE-------EeCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEe
Q psy12724         67 SYTVNIMDE-------------------------HV-------LKGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVD  113 (167)
Q Consensus        67 ~y~c~~~~~-------------------------~v-------~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~  113 (167)
                      .|.|.+.+.                         .+       ..|+++.|.|.+.+.  .|. +.++|+||+ ..+...
T Consensus       105 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~--~p~~~~v~W~k~g-~~l~~~  181 (234)
T 2j6e_L          105 DYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDF--FPGAVTVAWKADG-APVKAG  181 (234)
T ss_dssp             EEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBC--SSCCCEEEEEETT-EECCSS
T ss_pred             EEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEE--cCCceEEEEEECC-EECCCC
Confidence            999987420                         01       247899999999853  244 489999997 554211


Q ss_pred             ee-----ecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        114 MT-----ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       114 ~~-----~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..     ...++.|.  ..+.|.|.+++.+|+ |.|+|.|.|..
T Consensus       182 ~~~~~~~~~~~~~~~--~~s~L~i~~~~~~d~-G~Y~C~a~n~~  222 (234)
T 2j6e_L          182 VETTKPSKQSNNKYA--ASSYLSLTPEQWKSH-RSYSCQVTHEG  222 (234)
T ss_dssp             EEECCCCCCTTSCCB--CCEEECCCGGGTTTS-CCEEEEEEBTT
T ss_pred             ccccCceECCCCCEE--EEEEEEECHHHcCCC-CeEEEEEEeCC
Confidence            00     00111111  123699999999998 99999999986

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.50  E-value=1.1e-14  Score=99.43  Aligned_cols=82  Identities=20%  Similarity=0.289  Sum_probs=63.7

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcce
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKSY  144 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y  144 (167)
                      +...+.+..+.+|+++.|.|.+.   |.|.|.++|+|++ ..+.      ...++.+..   ++.|.|.+++.+|+ |.|
T Consensus        17 i~~~p~~~~v~~G~~v~L~C~~~---g~p~p~v~W~k~g-~~l~------~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y   85 (106)
T 1nct_A           17 ILTKPRSMTVYEGESARFSCDTD---GEPVPTVTWLRKG-QVLS------TSARHQVTTTKYKSTFEISSVQASDE-GNY   85 (106)
T ss_dssp             EEECCCCEEESSSSCEECCEEEE---CSSCCBCCBCSSS-SCCT------TCSSEEEEECSSEEEEEECCCCSSCC-SEE
T ss_pred             EEECCCCEEEeCCCcEEEEEEEE---EcCCCEEEEEECC-EECC------CCCCEEEEECCCEEEEEECcCCchhC-EEE
Confidence            44556678899999999999997   4588999999997 4542      345666554   35899999999999 999


Q ss_pred             EEEeeecC---cceEEEee
Q psy12724        145 QCRTKHRL---TGETRLSA  160 (167)
Q Consensus       145 ~C~a~n~~---~~~~~l~~  160 (167)
                      +|.|.|..   +..+.|.+
T Consensus        86 ~C~a~N~~G~~~~~~~l~V  104 (106)
T 1nct_A           86 SVVVENSEGKQEAEFTLTI  104 (106)
T ss_dssp             EECCBCSSCBCCEEEEEEE
T ss_pred             EEEEEeCCCeEEEEEEEEE
Confidence            99999987   33445544

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.50  E-value=2.7e-14  Score=101.50  Aligned_cols=89  Identities=10%  Similarity=0.078  Sum_probs=62.3

Q ss_pred             eeEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc---------cCCeEEEeecCc
Q psy12724         67 SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL---------PSGELHIRDVGP  137 (167)
Q Consensus        67 ~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~---------~~g~L~I~~v~~  137 (167)
                      .|.-.+++..+.+|++|+|.|.+.+..+.|.|.|+|+|+.-..+..    ..+.++.+.         .+..|.|++++.
T Consensus         9 ~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   84 (126)
T 2dav_A            9 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLAS----KAGKHLQLKETFERHSRVYTFEMQIIKAKD   84 (126)
T ss_dssp             SCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHH----HTTSSEEEEEEEETTTTEEEEEEEECSCCT
T ss_pred             EEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCC----CCCceEEEccccccccccceEEEEEccCCc
Confidence            4666678889999999999999875323589999999974111100    012223221         136799999999


Q ss_pred             CCCCcceEEEeeecC---cceEEEee
Q psy12724        138 EDGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       138 ~D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                      +|+ |.|+|.|.|..   +..+.|++
T Consensus        85 ~Da-G~Y~Cevsn~~g~~~~~~~L~V  109 (126)
T 2dav_A           85 NFA-GNYRCEVTYKDKFDSCSFDLEV  109 (126)
T ss_dssp             TSC-EEEEEEEECSSCEEEECCEEEE
T ss_pred             ccC-EEEEEEEEeCCCcEEEEEEEEE
Confidence            999 99999999987   33445554

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.49  E-value=5.3e-13  Score=99.07  Aligned_cols=118  Identities=14%  Similarity=0.234  Sum_probs=79.5

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee-----------cC--Cce--------E--------EEee
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI-----------DN--QDF--------V--------VSQS   67 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~-----------~~--~~~--------v--------~~g~   67 (167)
                      .+.+.+.+|+++.|.|.+.. +.+ .+.|.|.|++...+..           ..  .|.        +        .+|.
T Consensus         6 ~~~v~v~~G~~vtL~c~~~~-~~~-~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~   83 (180)
T 2dru_A            6 VPNVNAITGSNVTLTILKHP-LAS-YQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGD   83 (180)
T ss_dssp             CCEEEEETTSCEEECCCSSC-CCS-CSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEE
T ss_pred             cceEEEEeCCCEEEeCCCCC-CCc-eeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeE
Confidence            45788999999999999854 222 4589999953222210           00  121        1        2799


Q ss_pred             eEEEecCe-------------------EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC
Q psy12724         68 YTVNIMDE-------------------HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG  128 (167)
Q Consensus        68 y~c~~~~~-------------------~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g  128 (167)
                      |+|.+.+.                   ....++++.|.|.+..  + |.|.++|+|++ ..+. .           ..+.
T Consensus        84 Y~C~v~~~~~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~~~--g-p~p~i~W~~~~-~~l~-~-----------~~~~  147 (180)
T 2dru_A           84 YYMRMLHETEDQWKITMEVYEMVSKPMIYWECSNATLTCEVLE--G-TDVELKLYQGK-EHLR-S-----------LRQK  147 (180)
T ss_dssp             EEEEEESSSEEEEEEEEEEECCCCCCEEEEEGGGTEEEEECSS--C-TTCEEEEEETT-EEEE-E-----------ESSS
T ss_pred             EEEEEEcCCeEEEEEEEEEECCCCCCEEEecCCCEEEEEEeCC--C-CCCEEEEEECC-eECc-C-----------CCCC
Confidence            99986321                   1135778999999953  3 88999999997 4442 1           1245


Q ss_pred             eEEEeecCcCCCCcceEEEeeecCcce
Q psy12724        129 ELHIRDVGPEDGYKSYQCRTKHRLTGE  155 (167)
Q Consensus       129 ~L~I~~v~~~D~~G~Y~C~a~n~~~~~  155 (167)
                      .|.|..  .+|+ |.|+|.|.|.++..
T Consensus       148 ~l~~~~--~~d~-g~Y~C~a~N~~~~~  171 (180)
T 2dru_A          148 TMSYQW--TNLR-APFKCKAVNRVSQE  171 (180)
T ss_dssp             EEEEEC--SCCS-SCEEEEEEETTEEE
T ss_pred             EEEEEE--hhcC-ccEEEEEecCcCcc
Confidence            666633  7898 99999999998543

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.49  E-value=5.4e-13  Score=99.70  Aligned_cols=118  Identities=11%  Similarity=0.220  Sum_probs=78.6

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEee--CCCceee---------ecCCce---------E------EEeeeEE
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWAD--TDGGQYQ---------IDNQDF---------V------VSQSYTV   70 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k--~~~~~~~---------~~~~~~---------v------~~g~y~c   70 (167)
                      .+.+.+.+|+++.|.|.+..... ..+.|.|.|  ++. .+.         +...|.         +      .+|.|+|
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~-~~~~i~W~k~~~~~-~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c   83 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSD-DIDDIKWEKTSDKK-KIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKV   83 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCS-SEEEEEEEEGGGCC-EEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEE
T ss_pred             ccEEEEecCCCEEEeCCcccccC-cCCEEEEEECCCCc-EEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEE
Confidence            45688999999999996543222 257899999  643 331         112221         1      2799999


Q ss_pred             EecC------------eEE----------EeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC
Q psy12724         71 NIMD------------EHV----------LKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG  128 (167)
Q Consensus        71 ~~~~------------~~v----------~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g  128 (167)
                      .+.+            ..|          ..+.++.|.|.+.+   .|.|.++|++++ ..+ ..            .+.
T Consensus        84 ~~~n~~g~~~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~~~---~p~~~~~W~~~g-~~l-~~------------~~~  146 (182)
T 1hnf_A           84 SIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMN---GTDPELNLYQDG-KHL-KL------------SQR  146 (182)
T ss_dssp             EEEETTSCEEEEEEEEEEEECCCCCCEEEEETTTTEEEEECSS---CSSCEEEEEESS-CEE-EE------------ESS
T ss_pred             EEEeCCCceeEEEEEEEEEcCcCCCCEEEEccCcEEEEeEccC---CCCCEEEEEECC-EEC-CC------------CCc
Confidence            8743            011          13558999999984   478899999997 444 21            123


Q ss_pred             eEEEeecCcCCCCcceEEEeeecCcce
Q psy12724        129 ELHIRDVGPEDGYKSYQCRTKHRLTGE  155 (167)
Q Consensus       129 ~L~I~~v~~~D~~G~Y~C~a~n~~~~~  155 (167)
                      .|.+.. ..+|+ |.|+|.|.|.++..
T Consensus       147 ~i~~~~-~~~d~-G~Y~C~a~N~~~~~  171 (182)
T 1hnf_A          147 VITHKW-TTSLS-AKFKCTAGNKVSKE  171 (182)
T ss_dssp             CEEEEC-CSCEE-EEEEEEEECSSCEE
T ss_pred             EEEEec-ccCCC-cEEEEEEEeCCCCc
Confidence            344443 57898 99999999998543

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1.7e-14  Score=101.42  Aligned_cols=90  Identities=17%  Similarity=0.131  Sum_probs=63.1

Q ss_pred             eeeEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc---------cCCeEEEeecC
Q psy12724         66 QSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL---------PSGELHIRDVG  136 (167)
Q Consensus        66 g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~---------~~g~L~I~~v~  136 (167)
                      +.|.-.+++..|.+|++|+|.|.+.+..+.|.|.|+|+|+.-..+..    ..+.++.+.         .++.|.|+++.
T Consensus        13 ~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~I~~v~   88 (118)
T 2edn_A           13 GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGS----KSGARFSFKESHNSASNVYTVELHIGKVV   88 (118)
T ss_dssp             SSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCC----STTSSCEEEEEECSSSCEEEEEEEESSCC
T ss_pred             ceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCC----CCccEEEeccccccccccceEEEEEeeCC
Confidence            34666778899999999999999975323489999999974111110    012223221         14679999999


Q ss_pred             cCCCCcceEEEeeecC---cceEEEee
Q psy12724        137 PEDGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       137 ~~D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                      .+|+ |.|+|.|.|..   +..+.|++
T Consensus        89 ~~D~-G~Y~Cevsn~~g~~s~~~~L~V  114 (118)
T 2edn_A           89 LGDR-GYYRLEVKAKDTCDSCGFNIDV  114 (118)
T ss_dssp             TTTC-SCEEEEEECSSCEEEEEECCEE
T ss_pred             hhhC-EEEEEEEEEcCCcEEEEEEEEE
Confidence            9999 99999999988   33444444

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=3.6e-14  Score=96.39  Aligned_cols=76  Identities=25%  Similarity=0.343  Sum_probs=57.7

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC--eEEEeecCcCCCCcceE
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG--ELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g--~L~I~~v~~~D~~G~Y~  145 (167)
                      +...+.+..+.+|+++.|.|.+.   +.|.|.++|+|++ ..+...    ...++....++  .|.|.+++.+|+ |.|+
T Consensus        12 i~~~~~~~~v~~G~~v~l~C~~~---g~p~p~v~W~~~g-~~~~~~----~~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~   82 (110)
T 2dm3_A           12 FLQAPGDLTVQEGKLCRMDCKVS---GLPTPDLSWQLDG-KPVRPD----SAHKMLVRENGVHSLIIEPVTSRDA-GIYT   82 (110)
T ss_dssp             EEECCCEEEEESSSCBCCEEEEE---CSSCCEEECBBSS-SBCCCC----SSEEEEECTTSCEEEEESSCCGGGC-SBBC
T ss_pred             EEeCCCcEEEeCCCEEEEEEEEE---EcCCCEEEEEECC-EECCCC----CceEEEEecCCeEEEEEeeCCcccC-EEEE
Confidence            33344567889999999999997   4588999999997 455321    12233333444  799999999999 9999


Q ss_pred             EEeeecC
Q psy12724        146 CRTKHRL  152 (167)
Q Consensus       146 C~a~n~~  152 (167)
                      |.|.|..
T Consensus        83 C~a~n~~   89 (110)
T 2dm3_A           83 CIATNRA   89 (110)
T ss_dssp             EEEECSS
T ss_pred             EEEECCC
Confidence            9999987

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.48  E-value=5.3e-14  Score=93.10  Aligned_cols=70  Identities=13%  Similarity=0.178  Sum_probs=53.6

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeEEeeeecCCceEEE-ccCCeEEEeecCcCCCCcceEEEeee
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELFVDMTESTDGKYLV-LPSGELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~~~~~~~~~~r~~~-~~~g~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      .+..+.+|+++.|.|.+.   |.|.|.++|+|++ +..+.      ...+... ...+.|.|.+++.+|+ |.|+|.|.|
T Consensus        10 ~~~~v~~G~~~~l~C~~~---g~P~p~i~W~k~~~~~~~~------~~~~~~~~~~~~~L~i~~~~~~D~-G~Y~C~a~N   79 (93)
T 1wit_A           10 RKIKIKAGFTHNLEVDFI---GAPDPTATWTVGDSGAALA------PELLVDAKSSTTSIFFPSAKRADS-GNYKLKVKN   79 (93)
T ss_dssp             CEEEECTTBCCEEEEEEE---CCSSCEEEEECSTTTCBCS------TTSEEEEETTEEEEECTTBCGGGC-EEEEEEEEE
T ss_pred             CceEEeCCCEEEEEEEEE---EcCCCEEEEEECCCCcccC------CcEEEEecCCEEEEEECCCChhcC-EEEEEEEEc
Confidence            456788999999999998   4599999999997 22331      1222222 1235799999999999 999999999


Q ss_pred             cC
Q psy12724        151 RL  152 (167)
Q Consensus       151 ~~  152 (167)
                      ..
T Consensus        80 ~~   81 (93)
T 1wit_A           80 EL   81 (93)
T ss_dssp             TT
T ss_pred             CC
Confidence            87

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.48  E-value=6.9e-14  Score=94.35  Aligned_cols=78  Identities=21%  Similarity=0.326  Sum_probs=60.1

Q ss_pred             EecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCc--eEEEccC---CeEEEeecCcCCCCcceE
Q psy12724         71 NIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDG--KYLVLPS---GELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        71 ~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~--r~~~~~~---g~L~I~~v~~~D~~G~Y~  145 (167)
                      .+.+..+.+|+++.|.|.+.   + |.|.++|+||+ ..+..      +.  ||.+..+   ..|.|.+++.+|+ |.|+
T Consensus        13 ~~~~~~v~~G~~v~l~C~~~---~-~~~~v~W~k~g-~~l~~------~~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~   80 (103)
T 1x44_A           13 QLEDTTAYCGERVELECEVS---E-DDANVKWFKNG-EEIIP------GPKSRYRIRVEGKKHILIIEGATKADA-AEYS   80 (103)
T ss_dssp             CCCCEEEETTEEEEEEEECS---S-SSCCCEEEETT-EECCC------STTCSEEEEEETTEEEEEEEEECTTTC-SEEE
T ss_pred             cCCCEEEECCCCEEEEEEec---C-CCCeEEEEECC-EECCC------CCceEEEEEEcCCEEEEEECCCCcccC-EEEE
Confidence            34567889999999999996   3 66889999997 55532      33  6666654   4799999999999 9999


Q ss_pred             EEeeecCcceEEEeee
Q psy12724        146 CRTKHRLTGETRLSAT  161 (167)
Q Consensus       146 C~a~n~~~~~~~l~~~  161 (167)
                      |.|.|. +..+.|.+.
T Consensus        81 C~a~n~-~~~~~l~V~   95 (103)
T 1x44_A           81 VMTTGG-QSSAKLSVD   95 (103)
T ss_dssp             EEETTE-EEEEEEEEE
T ss_pred             EEECCC-cEEEEEEEe
Confidence            999994 455566553

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.47  E-value=8.9e-14  Score=110.07  Aligned_cols=133  Identities=16%  Similarity=0.210  Sum_probs=86.4

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCc--ceeeEEeeCCCcee---e--------ecCCc---------------eE--
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDH--LDVVSWADTDGGQY---Q--------IDNQD---------------FV--   63 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~--~~~i~W~k~~~~~~---~--------~~~~~---------------~v--   63 (167)
                      ...|.++.+..|+++.|.|.+.+.+.+.  +..|.|.|++....   .        ....+               .+  
T Consensus         4 v~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I   83 (313)
T 4fqp_A            4 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRM   83 (313)
T ss_dssp             EECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEE
T ss_pred             EcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEE
Confidence            3467788999999999999987665431  22489999853210   0        00000               01  


Q ss_pred             ------EEeeeEEEecC--------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeE
Q psy12724         64 ------VSQSYTVNIMD--------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELF  111 (167)
Q Consensus        64 ------~~g~y~c~~~~--------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~  111 (167)
                            .+|.|+|.+.+                          ..+..|+.+.+.|.+.+  +.|.|.++|+|++. .+.
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~--~~P~~~i~W~~~~~-~~~  160 (313)
T 4fqp_A           84 FGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTG--GRPPAQITWHSDLG-GMP  160 (313)
T ss_dssp             CSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEE--EBSCCEEEEEETTC-CEE
T ss_pred             CcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccC--ccCCcEEEeecCCc-ccc
Confidence                  27999997621                          11235778889998753  45889999999974 443


Q ss_pred             Eee--eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        112 VDM--TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       112 ~~~--~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ...  ....++.+.+  ...|.|.++..+|+ |.|+|.|.|..
T Consensus       161 ~~~~~~~~~~~~~~~--~s~l~i~~~~~~d~-g~Y~C~a~n~~  200 (313)
T 4fqp_A          161 NTSQVPGFLSGTVTV--TSLWILVPSSQVDG-KNVTCKVEHES  200 (313)
T ss_dssp             EEEEEECSSTTCEEE--EEEEEECCCGGGTT-CEEEEEEECTT
T ss_pred             ccceeeeeccccccc--ceeeeecccccccC-eeEEEEEEccC
Confidence            211  0011222222  12599999999999 99999999965

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.47  E-value=1.8e-13  Score=92.00  Aligned_cols=79  Identities=18%  Similarity=0.325  Sum_probs=58.8

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-eecCCceEEEc----cCCeEEEeecCcCCCCc
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-TESTDGKYLVL----PSGELHIRDVGPEDGYK  142 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-~~~~~~r~~~~----~~g~L~I~~v~~~D~~G  142 (167)
                      +.-.+.+..+.+|+++.|.|.+.+   .|.|.+.|+|++...+.... ....++|+.+.    .++.|.|.+++.+|+ |
T Consensus         9 ~~~~~~~~~v~~G~~v~L~C~~~~---~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~-G   84 (108)
T 3m45_A            9 QFPLTQNVTVVEGGTAILTCRVDQ---NDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDE-G   84 (108)
T ss_dssp             CCEECCCEEEETTSCEEEEEEESS---CSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGC-E
T ss_pred             ccccCCeeEEEeCCcEEEEeEEcC---CCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHC-e
Confidence            445567789999999999999984   47889999998742332110 00123477654    345899999999999 9


Q ss_pred             ceEEEeee
Q psy12724        143 SYQCRTKH  150 (167)
Q Consensus       143 ~Y~C~a~n  150 (167)
                      .|+|.|.|
T Consensus        85 ~Y~C~~~n   92 (108)
T 3m45_A           85 QYTCSLFT   92 (108)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEEc
Confidence            99999999

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=8.9e-14  Score=93.35  Aligned_cols=68  Identities=22%  Similarity=0.404  Sum_probs=55.1

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      +.+..+.+|+++.|.|.+.+   .| |.++|+|++ ..+.      ...++.+. ++.|.|.+++.+|+ |.|+|.|.|.
T Consensus        10 p~~~~v~~G~~v~L~C~~~g---~p-p~i~W~k~g-~~~~------~~~~~~~~-~~~L~i~~v~~~D~-G~Y~C~a~n~   76 (99)
T 2cr3_A           10 VESFLVHPGDLLQLRCRLRD---DV-QSINWLRDG-VQLA------ESNRTRIT-GEEVEVQDSVPADS-GLYACVTSSP   76 (99)
T ss_dssp             EEECCBCTTSCEEEECCCCS---SC-CEEEEEESS-SBCC------CCSSEEEC-SSEEEETTCCTTTC-EEEEEEEEET
T ss_pred             CcCeEEeCCCcEEEEEEecC---CC-CeEEEEECC-EECC------CCCcEEEE-CCEEEEccCCHHHC-EEEEEEEEeC
Confidence            34456789999999999984   46 789999997 4553      24466655 68999999999999 9999999998


Q ss_pred             C
Q psy12724        152 L  152 (167)
Q Consensus       152 ~  152 (167)
                      .
T Consensus        77 ~   77 (99)
T 2cr3_A           77 S   77 (99)
T ss_dssp             T
T ss_pred             C
Confidence            6

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=7.6e-14  Score=93.91  Aligned_cols=79  Identities=23%  Similarity=0.427  Sum_probs=62.0

Q ss_pred             EEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcceEE
Q psy12724         70 VNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        70 c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~C  146 (167)
                      -.+.+..+.+|+++.|.|.+.+    |.|.++|+|++ ..+.      ...++.+..+|   .|.|.+++.+|+ |.|+|
T Consensus        13 ~~~~~~~v~~G~~v~l~C~~~~----~~~~v~W~k~g-~~~~------~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C   80 (103)
T 2edf_A           13 KPLEDQWVAPGEDVELRCELSR----AGTPVHWLKDR-KAIR------KSQKYDVVCEGTMAMLVIRGASLKDA-GEYTC   80 (103)
T ss_dssp             ECCCCEEECTTSCEEECCEESS----SSCCCCEEESS-CBCC------CSSSEEEEEETTEEEEEESSCCTTTC-SEEEE
T ss_pred             ecCCccEEcCCCCEEEEEEEeC----CCCcEEEEECC-EEcc------CCCCEEEEECCCEEEEEECCCCcccC-EEEEE
Confidence            3345678889999999999973    67789999997 4553      34577776666   599999999999 99999


Q ss_pred             EeeecCcceEEEeee
Q psy12724        147 RTKHRLTGETRLSAT  161 (167)
Q Consensus       147 ~a~n~~~~~~~l~~~  161 (167)
                      .|.|. +..+.|.+.
T Consensus        81 ~a~n~-~~~~~l~V~   94 (103)
T 2edf_A           81 EVEAS-KSTASLHVE   94 (103)
T ss_dssp             ECSSC-EEEEEEEEC
T ss_pred             EEccC-CcEEEEEEe
Confidence            99994 556666653

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.47  E-value=3.4e-13  Score=106.22  Aligned_cols=140  Identities=19%  Similarity=0.272  Sum_probs=89.8

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cce---e-eec---------------------CCc---eE----
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQ---Y-QID---------------------NQD---FV----   63 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~---~-~~~---------------------~~~---~v----   63 (167)
                      +.++.+.+|+++.|.|.+.+...+ .+.+.|+|.+ +..   + ..+                     ...   .+    
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFS-SFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRS   85 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCT-TSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECS
T ss_pred             CCCEEECCCCcEEEEEEeeccCCC-CeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence            778899999999999999875322 2479998743 110   0 000                     100   11    


Q ss_pred             ----EEeeeEEEecCe------------------------------------------------EEEeCCcEEEEeeeCC
Q psy12724         64 ----VSQSYTVNIMDE------------------------------------------------HVLKGNSAVLKCHIPS   91 (167)
Q Consensus        64 ----~~g~y~c~~~~~------------------------------------------------~v~~G~~a~l~C~~~~   91 (167)
                          .+|.|.|.+.+.                                                .+.+|++|.|.|.+.+
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~v~~G~~v~L~C~~~~  165 (280)
T 3fku_X           86 LRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQTATLTCTGNS  165 (280)
T ss_dssp             CCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSEEEECTTCCEEEEEECCC
T ss_pred             CChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCcEEEecCCCEEEEEEecC
Confidence                179999987542                                                3467999999999975


Q ss_pred             ccCCc-ceeEEEEeCC-CeeeEEee------eecCCceEEEccCC---eEEEeecCcCCCCcceEEEeeecC------cc
Q psy12724         92 FVADY-VAVESWISDQ-GEELFVDM------TESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQCRTKHRL------TG  154 (167)
Q Consensus        92 ~~~~p-~p~i~W~k~~-~~~l~~~~------~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~C~a~n~~------~~  154 (167)
                      .  .+ .+.+.|+|.. +..+....      .....+||.+..++   .|.|.+++.+|+ |.|.|.+.|..      +.
T Consensus       166 ~--~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~~~~~~~g~  242 (280)
T 3fku_X          166 N--NVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDE-ADYYCSTWDSSLSAVVFGG  242 (280)
T ss_dssp             C--CCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGC-SEEEEEEEETTTTEEEEBC
T ss_pred             C--CCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHC-EEEEEEEecCCCCceEECC
Confidence            2  23 4788998842 11111000      00113567665433   499999999999 99999999864      34


Q ss_pred             eEEEee
Q psy12724        155 ETRLSA  160 (167)
Q Consensus       155 ~~~l~~  160 (167)
                      .++|++
T Consensus       243 ~t~l~V  248 (280)
T 3fku_X          243 GTKLTV  248 (280)
T ss_dssp             CCEEEE
T ss_pred             CEEEEE
Confidence            455655

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=3.6e-14  Score=96.62  Aligned_cols=78  Identities=15%  Similarity=0.321  Sum_probs=59.9

Q ss_pred             EecCeEEEeCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcceEE
Q psy12724         71 NIMDEHVLKGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        71 ~~~~~~v~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~C  146 (167)
                      .+.+..+.+|++|.|.|.+.+   .|. +.++|+||+ ..+.      .++|+.+..+|   .|.|++++.+|+ |.|+|
T Consensus        14 ~~~~~~v~~G~~v~l~C~v~~---~~~~~~v~W~k~g-~~i~------~~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C   82 (104)
T 2eny_A           14 RLKTMEVLEGESCSFECVLSH---ESASDPAMWTVGG-KTVG------SSSRFQATRQGRKYILVVREAAPSDA-GEVVF   82 (104)
T ss_dssp             CCCCEEEESSCCEEEEEECSS---CCCSSCBCCBSSS-SBCS------BCSSCEEEEETTEEEEEECSCCTTTC-SCEEE
T ss_pred             cCCCcEEcCCCcEEEEEEEcC---CCCCceeEEEECC-EECC------CCCCEEEEEcCCEEEEEECCCCHHHC-EEEEE
Confidence            346788999999999999974   353 478999998 4553      24567666555   699999999999 99999


Q ss_pred             EeeecCcceEEEee
Q psy12724        147 RTKHRLTGETRLSA  160 (167)
Q Consensus       147 ~a~n~~~~~~~l~~  160 (167)
                      .|.|.. ..+.|.+
T Consensus        83 ~a~~~~-~~a~L~V   95 (104)
T 2eny_A           83 SVRGLT-SKASLIV   95 (104)
T ss_dssp             EETTEE-EEECEEE
T ss_pred             EECCee-EEEEEEE
Confidence            998864 4455554

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=2.4e-13  Score=93.85  Aligned_cols=76  Identities=13%  Similarity=0.100  Sum_probs=57.5

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc-cCC--eEEEeecCcCCCCcceEEEee
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL-PSG--ELHIRDVGPEDGYKSYQCRTK  149 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~-~~g--~L~I~~v~~~D~~G~Y~C~a~  149 (167)
                      .+..+.+|+++.|.|.+.   |.|.|.++|+|++ ..+.       .+++.+. .++  .|.|.+++.+|+ |.|+|.|.
T Consensus        32 ~~~~v~~G~~~~l~C~~~---g~P~p~i~W~k~g-~~l~-------~~~~~~~~~~~~~~L~i~~~~~~D~-G~Y~C~a~   99 (118)
T 2e7c_A           32 QTYIRKVGEQLNLVVPFQ---GKPRPQVVWTKGG-APLD-------TSRVHVRTSDFDTVFFVRQAARSDS-GEYELSVQ   99 (118)
T ss_dssp             SCEEEESSSCEEEEEEEE---EESCCEEEEEETT-EECC-------CSSCEEEECSSEEEEEESSCCTTTC-EEEEEEEE
T ss_pred             CCEEEECCCEEEEEEEEc---cCCCCEEEEEECC-EECC-------CCcEEEEECCCeEEEEECCCChhcC-EEEEEEEE
Confidence            456788999999999997   4599999999997 4542       2333332 233  499999999999 99999999


Q ss_pred             ecC---cceEEEee
Q psy12724        150 HRL---TGETRLSA  160 (167)
Q Consensus       150 n~~---~~~~~l~~  160 (167)
                      |..   +..+.|.+
T Consensus       100 N~~G~~~~~~~l~V  113 (118)
T 2e7c_A          100 IENMKDTATIRIRV  113 (118)
T ss_dssp             CSSCEECCEEEEEE
T ss_pred             eCCCeEEEEEEEEE
Confidence            987   33444544

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=2.9e-13  Score=94.16  Aligned_cols=82  Identities=18%  Similarity=0.323  Sum_probs=64.0

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCc----------eEEEccCC---eEEEee
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDG----------KYLVLPSG---ELHIRD  134 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~----------r~~~~~~g---~L~I~~  134 (167)
                      +.-..+|..+.+|++|.|.|.+.+     .|.++|+||+ ..|.+      +.          ||.+..+|   .|.|++
T Consensus        11 ~~~~l~d~~v~eG~~a~f~C~vs~-----~p~v~W~knG-~~l~~------~~~~~~~~~~~~r~~i~~~g~~~~L~I~~   78 (112)
T 2e6q_A           11 LVAGLEDVQVYDGEDAVFSLDLST-----IIQGTWFLNG-EELKS------NEPEGQVEPGALRYRIEQKGLQHRLILHA   78 (112)
T ss_dssp             EEECCCCEEEETTCEEEEEEEESS-----CCCCEEEESS-CBCCS------SCCCTTSCTTSCEEEECCBTTEEEEEEES
T ss_pred             EecCCCCeEEcCCCcEEEEEEECC-----CCeEEEEECC-EECcc------CcccccccccccEEEEEeCCcEEEEEECC
Confidence            344457889999999999999972     5678999998 56642      33          88888777   799999


Q ss_pred             cCcCCCCcceEEEeeecCcceEEEeeeC
Q psy12724        135 VGPEDGYKSYQCRTKHRLTGETRLSATK  162 (167)
Q Consensus       135 v~~~D~~G~Y~C~a~n~~~~~~~l~~~~  162 (167)
                      ++.+|+ |.|+|...+.....+.|++..
T Consensus        79 v~~~D~-G~Y~~~~~~~~~ssA~L~V~~  105 (112)
T 2e6q_A           79 VKHQDS-GALVGFSCPGVQDSAALTIQE  105 (112)
T ss_dssp             CCSTTC-SEEEEEEETTEEEEEEEEEEC
T ss_pred             CCHHHC-ccEEEEEECCeeEEEEEEEeC
Confidence            999999 999885556555667777643

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.46  E-value=1.1e-12  Score=99.06  Aligned_cols=139  Identities=17%  Similarity=0.267  Sum_probs=90.9

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Ccee--e----ec------------CCc------------eE
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQY--Q----ID------------NQD------------FV   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~--~----~~------------~~~------------~v   63 (167)
                      .++..+.|.+|+++.|.|.+.+.+.+ .+.+.|+|.+ +..+  .    .+            ..|            .+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   83 (221)
T 3m8o_H            5 VESGGGLVQPGGSLKLSCAASGFTLS-GSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFL   83 (221)
T ss_dssp             EEESCEEECTTCCEEEEEEEESSCGG-GSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEE
T ss_pred             EccCCEEEcCCCCEEEEEEccccccc-ccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEE
Confidence            45667889999999999999865422 2579998743 2111  0    00            011            01


Q ss_pred             --------EEeeeEEEecCe----------------------EE--------EeCCcEEEEeeeCCccCCcc--eeEEEE
Q psy12724         64 --------VSQSYTVNIMDE----------------------HV--------LKGNSAVLKCHIPSFVADYV--AVESWI  103 (167)
Q Consensus        64 --------~~g~y~c~~~~~----------------------~v--------~~G~~a~l~C~~~~~~~~p~--p~i~W~  103 (167)
                              .+|.|.|.+.+.                      .+        .+|+.+.|.|.+.+.  .|.  +.++|+
T Consensus        84 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~g~~v~L~C~~~~~--~P~~~~~v~W~  161 (221)
T 3m8o_H           84 QMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGF--FPQEPLSVTWS  161 (221)
T ss_dssp             EECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSCCCTTEEEEEEEEEEE--BSSCSEEEEES
T ss_pred             EECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCcccccCCCEEEEEEEEee--ECCCCEEEEEE
Confidence                    179999987320                      11        268899999999862  354  589999


Q ss_pred             eCCCeeeEEeee---e-cCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCcceEEEee
Q psy12724        104 SDQGEELFVDMT---E-STDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETRLSA  160 (167)
Q Consensus       104 k~~~~~l~~~~~---~-~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~~~~~l~~  160 (167)
                      |++ ..+.....   . ..+++|.+.  ..|.|.++..+|+ |.|+|.|.|.......+++
T Consensus       162 ~~g-~~~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~d~-g~ytC~v~~~~~~~~~~~v  218 (221)
T 3m8o_H          162 ESG-QGVTARNFPPSQDASGDLYTTS--SQLTLPATQCLAG-KSVTCHVKHYTNPSQDVTV  218 (221)
T ss_dssp             CCS-TTCEEEECCCEECSSSSCEEEE--EEEEEEGGGSCTT-CEEEEEEEETTSCCEEEEE
T ss_pred             ECC-EECceEEcCceeeCCCCcEEEE--EEEEECHHHcCCC-CeEEEEEEECCCCceeeec
Confidence            987 44422110   0 134556553  3699999999998 9999999998755444443

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=4.5e-14  Score=94.95  Aligned_cols=81  Identities=23%  Similarity=0.312  Sum_probs=60.2

Q ss_pred             EEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCc--eEEEccCC---eEEEeecCcCCCCcc
Q psy12724         69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDG--KYLVLPSG---ELHIRDVGPEDGYKS  143 (167)
Q Consensus        69 ~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~--r~~~~~~g---~L~I~~v~~~D~~G~  143 (167)
                      .-.+.+..+.+|+++.|.|.+.+   .| |.++|+||+ ..+...    ...  ||.+..+|   .|.|.+++.+|+ |.
T Consensus        12 ~~~~~~~~v~~G~~v~l~C~~~~---~~-~~v~W~k~g-~~i~~~----~~~~~~~~~~~~~~~~~L~I~~~~~~D~-G~   81 (101)
T 2edk_A           12 VTPLEDQQVFVGDRVEMAVEVSE---EG-AQVMWMKNG-VELTRE----DSFKARYRFKKDGKRHILIFSDVVQEDR-GR   81 (101)
T ss_dssp             EECCCCEEEESSCCCBCCEEESC---SS-CCCEEEESS-CBCCCS----CCSSCCCEEEECSSEEEEECSSCCGGGC-SB
T ss_pred             EecCCceEEcCCCCEEEEEEEeC---CC-CEEEEEECC-EECCCC----CCcceeEEEEECCCEEEEEECCCChhhC-EE
Confidence            33445678899999999999974   47 889999997 455321    111  66666555   599999999999 99


Q ss_pred             eEEEeeecCcceEEEee
Q psy12724        144 YQCRTKHRLTGETRLSA  160 (167)
Q Consensus       144 Y~C~a~n~~~~~~~l~~  160 (167)
                      |+|.|.|. ...+.|.+
T Consensus        82 Y~C~a~n~-~~~~~l~V   97 (101)
T 2edk_A           82 YQVITNGG-QCEAELIV   97 (101)
T ss_dssp             EEEECSSC-EECCBEEE
T ss_pred             EEEEEcCC-cEEEEEEE
Confidence            99999994 34445554

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.46  E-value=3.7e-13  Score=97.31  Aligned_cols=77  Identities=22%  Similarity=0.458  Sum_probs=61.3

Q ss_pred             EeeeEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc--cCC--eEEEeecCcCCC
Q psy12724         65 SQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL--PSG--ELHIRDVGPEDG  140 (167)
Q Consensus        65 ~g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~--~~g--~L~I~~v~~~D~  140 (167)
                      .+.+...+.+..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.      ...++.+.  .+|  .|.|.+++.+|+
T Consensus        41 ~P~~~~~~~~~~v~~G~~v~L~C~~~g---~P~p~v~W~k~g-~~~~------~~~~~~~~~~~~~~~~L~I~~v~~~D~  110 (154)
T 1fhg_A           41 KPYFTKTILDMEVVEGSAARFDCKVEG---YPDPEVMWFKDD-NPVK------ESRHFQIDYDEEGNCSLTISEVCGDDD  110 (154)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEE---ESCCEEEEEETT-EECC------CSSSEEEEECTTCEEEEEESSCCGGGC
T ss_pred             CCeEEccCCcEEEeCCCeEEEEEEEEE---ecCCEEEEEECC-EECC------CCCcEEEEECCCCeEEEEECCCChhcC
Confidence            344555567788999999999999974   588999999997 4553      34556554  233  899999999999


Q ss_pred             CcceEEEeeecC
Q psy12724        141 YKSYQCRTKHRL  152 (167)
Q Consensus       141 ~G~Y~C~a~n~~  152 (167)
                       |.|+|.|.|..
T Consensus       111 -G~Y~C~a~N~~  121 (154)
T 1fhg_A          111 -AKYTCKAVNSL  121 (154)
T ss_dssp             -EEEEEEEEETT
T ss_pred             -EEEEEEEEECC
Confidence             99999999987

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.46  E-value=1.1e-13  Score=110.70  Aligned_cols=129  Identities=16%  Similarity=0.126  Sum_probs=65.0

Q ss_pred             EeEEEEEeCCcEEEEeecCCC--CCCcceeeEEeeCCCceeee------cCCc-eE------EEeeeEEEecCe------
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSF--VSDHLDVVSWADTDGGQYQI------DNQD-FV------VSQSYTVNIMDE------   75 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~--~~~~~~~i~W~k~~~~~~~~------~~~~-~v------~~g~y~c~~~~~------   75 (167)
                      +.+..+.+|+++.|.|.+...  .+.+.+.+.|+|++. .+..      ++.. .+      ..|.|+|.+.+.      
T Consensus       127 ~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~-~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~  205 (349)
T 4dep_C          127 PVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCY-KIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTF  205 (349)
T ss_dssp             CEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTE-ECCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEE
T ss_pred             CcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCE-ECCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEE
Confidence            456788999999999986322  112235899999853 3321      1111 11      269999976320      


Q ss_pred             -------------------------------EEEeCCcEEEEeeeCCc-cCCcceeEEEEeCCCeeeEEeeeecCCceEE
Q psy12724         76 -------------------------------HVLKGNSAVLKCHIPSF-VADYVAVESWISDQGEELFVDMTESTDGKYL  123 (167)
Q Consensus        76 -------------------------------~v~~G~~a~l~C~~~~~-~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~  123 (167)
                                                     .+.+|+++.|.|.+.+. .++|.|.++|+|++ ..+...     .+++.
T Consensus       206 ~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g-~~l~~~-----~~~~~  279 (349)
T 4dep_C          206 HLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDG-KKPDDI-----TIDVT  279 (349)
T ss_dssp             EEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSC-C-------------CC
T ss_pred             EEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECC-EEcccc-----CCccc
Confidence                                           33468899999998621 13588999999997 455320     11111


Q ss_pred             E------cc------CCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        124 V------LP------SGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       124 ~------~~------~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +      ..      .+.|.|.+++.+|+.|.|+|.|.|..
T Consensus       280 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~  320 (349)
T 4dep_C          280 INESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAK  320 (349)
T ss_dssp             CCEEEECCTTCCEEEEECC-------------CEEEEECSS
T ss_pred             cccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCC
Confidence            1      11      23499999999993399999999987

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.46  E-value=3.7e-14  Score=107.72  Aligned_cols=121  Identities=15%  Similarity=0.263  Sum_probs=78.4

Q ss_pred             EEeCCcEEEEeecCCCC--CCcceeeEEeeCCCceeee--------c-CCc-----eE--------EEeeeEEEecCe--
Q psy12724         22 VIKGNAAVFKCNLPSFV--SDHLDVVSWADTDGGQYQI--------D-NQD-----FV--------VSQSYTVNIMDE--   75 (167)
Q Consensus        22 v~~G~~~~l~C~a~~~~--~~~~~~i~W~k~~~~~~~~--------~-~~~-----~v--------~~g~y~c~~~~~--   75 (167)
                      +.+|+++.|.|.+.+.+  .+ .+.|+|+|+++. +..        . +.+     .+        ..|.|+|.+.+.  
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~-~~~v~W~k~~~~-~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~  100 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDP-DVQISWFVNNVE-VHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDL  100 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSC-CEEEEEEETTEE-ECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTC
T ss_pred             hccCCCeeEEEEEcCCccCCC-ceEEEEEECCcc-ccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcC
Confidence            78999999999998763  22 257999999743 211        0 111     11        169999987320  


Q ss_pred             --------------------EE-------EeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeeeecCCceEEEccC
Q psy12724         76 --------------------HV-------LKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMTESTDGKYLVLPS  127 (167)
Q Consensus        76 --------------------~v-------~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~~~~~~r~~~~~~  127 (167)
                                          .+       ..|+.+.|.|.+.+.  .|.| .++|+||+ ..+...    ...++....+
T Consensus       101 ~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~--~P~~~~v~W~k~g-~~~~~~----~~~~~~~~~~  173 (218)
T 2rgs_A          101 PSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGF--NPGDISVEWTSNG-HTEENY----KDTAPVLDSD  173 (218)
T ss_dssp             SSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEE--BSSCCEEEEEETT-EEECCE----EECCCEECTT
T ss_pred             CCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEee--eCCCcEEEEEECC-EeccCc----eecccEECCC
Confidence                                01       138999999999863  3655 89999997 454211    0112222344


Q ss_pred             Ce------EEEeecCcCCCCcceEEEeeecC
Q psy12724        128 GE------LHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       128 g~------L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |.      |.|.....+|. |.|+|.|.|..
T Consensus       174 gt~~~~s~l~v~~~~~~d~-g~YtC~a~n~~  203 (218)
T 2rgs_A          174 GSYFIYSKLNMKTSKWEKT-DSFSCNVRHEG  203 (218)
T ss_dssp             SCEEEEEEEEEEHHHHHHC-SCEEEEEECTT
T ss_pred             CCEEEEEEEEECHHHcCCC-CeEEEEEEcCC
Confidence            53      55555556678 99999999986

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.45  E-value=1.2e-12  Score=108.33  Aligned_cols=126  Identities=10%  Similarity=0.058  Sum_probs=87.1

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecC---Cc---e--E------EEeeeEEEecC----
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN---QD---F--V------VSQSYTVNIMD----   74 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~---~~---~--v------~~g~y~c~~~~----   74 (167)
                      +...+.+..+.+|+++.|.|.+.+.+.+.-..|+|+|++. .+....   ..   .  +      ..|.|+|.+.+    
T Consensus        89 ~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~-~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  167 (450)
T 1z7z_I           89 VELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEK-ELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRP  167 (450)
T ss_dssp             EEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTE-EEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGG
T ss_pred             ceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCE-EeecccccccccceEEEEEeeccccCceEEEEEEcccCC
Confidence            3356667789999999999999987753111799999854 443321   11   1  1      27999998742    


Q ss_pred             ------------------------------eEEEeCCcEEEEeeeCCccCCc--ceeEEEEeCCCeeeEEeeeecCCceE
Q psy12724         75 ------------------------------EHVLKGNSAVLKCHIPSFVADY--VAVESWISDQGEELFVDMTESTDGKY  122 (167)
Q Consensus        75 ------------------------------~~v~~G~~a~l~C~~~~~~~~p--~p~i~W~k~~~~~l~~~~~~~~~~r~  122 (167)
                                                    ..+.+|+++.|.|.+.+.  .|  .+.++|+|++ ..+.        .++
T Consensus       168 ~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~g~--~P~~~~~~~W~~~~-~~~~--------~~~  236 (450)
T 1z7z_I          168 QGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGL--FPVSEAQVHLALGD-QRLN--------PTV  236 (450)
T ss_dssp             GTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEESC--TTGGGCEEEEEETT-EECC--------CEE
T ss_pred             CCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEeeCC--CCCCceEEEEeCCC-EeCC--------ceE
Confidence                                          234579999999999743  15  7899999998 4442        133


Q ss_pred             EEccCCeEEEe---ecCcCCCCc--ceEEEeeecC
Q psy12724        123 LVLPSGELHIR---DVGPEDGYK--SYQCRTKHRL  152 (167)
Q Consensus       123 ~~~~~g~L~I~---~v~~~D~~G--~Y~C~a~n~~  152 (167)
                      ....+ .+.+.   +++.+|+ |  .|+|.|.|..
T Consensus       237 ~~~~~-~~~~~~~~~v~~~d~-G~~~Y~C~a~n~~  269 (450)
T 1z7z_I          237 TYGND-SFSAKASVSVTAEDE-GTQRLTCAVILGN  269 (450)
T ss_dssp             EEETT-EEEEEEEEECCGGGC-EEEEEEEEEEETT
T ss_pred             EecCC-ceeEEEEEEeEhhhC-CcEEEEEEEccCC
Confidence            33333 23332   7899999 9  9999999986

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=9.9e-14  Score=93.50  Aligned_cols=73  Identities=16%  Similarity=0.307  Sum_probs=57.2

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcceEEEeeec
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      ..+.+|+++.|.|.+.+   .|.| ++|+|++ ..+.      ...++.+..++   .|.|.+++.+|+ |.|+|.|.|.
T Consensus        20 ~~v~~G~~v~l~C~~~~---~p~~-v~W~k~g-~~~~------~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~n~   87 (104)
T 2e6p_A           20 LTFTTSERVVLTCELSR---VDFP-ATWYKDG-QKVE------ESELLVVKMDGRKHRLILPEAKVQDS-GEFECRTEGV   87 (104)
T ss_dssp             EEEESSSCEECCEECSS---TTCC-CEEEETT-EECC------CBTTBEEEEETTEEEEEESSCCTTTC-EEEEEECSSC
T ss_pred             EEEeCCCcEEEEEEecC---CCCc-cEEeeCC-EECC------CCCCEEEEeCCCEEEEEECCCChhhC-EEEEEEECCc
Confidence            57889999999999984   4778 8999997 5553      23455555444   699999999999 9999999997


Q ss_pred             CcceEEEee
Q psy12724        152 LTGETRLSA  160 (167)
Q Consensus       152 ~~~~~~l~~  160 (167)
                      . +.+.|.+
T Consensus        88 ~-~~~~l~V   95 (104)
T 2e6p_A           88 S-AFFGVTV   95 (104)
T ss_dssp             C-CCEEEEE
T ss_pred             e-EEEEEEE
Confidence            4 4556655

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.45  E-value=3.2e-13  Score=89.60  Aligned_cols=75  Identities=24%  Similarity=0.336  Sum_probs=58.1

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      +.+..+.+|+++.|.|.+.+     .|.++|+|++ ..+.      ...++.+ .++.|.|.+++.+|+ |.|+|.|.|.
T Consensus         8 p~~~~v~~G~~~~l~C~~~~-----~p~v~W~k~g-~~~~------~~~~~~~-~~~~L~i~~~~~~D~-G~Y~C~a~n~   73 (95)
T 4hwu_A            8 PEAYVVAPGESLELQCMLKD-----AAVISWTKDG-VHLG------PNNRTVL-IGEYLQIKGATPRDS-GLYACTAART   73 (95)
T ss_dssp             CEEEEECTTSCEEEECCCCT-----TCEEEEEETT-EEEC------CCSSEEE-ETTEEEECSCCGGGC-EEEEEEEECS
T ss_pred             CCcEEECCCCEEEEEEEeCC-----CCEEEEEECC-EECC------CCceEEE-eCCEEEECcCCcccC-EEEEEEEccC
Confidence            34567889999999999973     4689999997 5553      3456655 468999999999999 9999999998


Q ss_pred             C---cceEEEee
Q psy12724        152 L---TGETRLSA  160 (167)
Q Consensus       152 ~---~~~~~l~~  160 (167)
                      .   +..+.|.+
T Consensus        74 ~g~~~~~~~l~V   85 (95)
T 4hwu_A           74 VDSETWIFMVNV   85 (95)
T ss_dssp             SCEEEEEEEEEE
T ss_pred             CCcEEEEEEEEE
Confidence            7   33444544

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.45  E-value=1.5e-13  Score=91.61  Aligned_cols=67  Identities=21%  Similarity=0.354  Sum_probs=52.9

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +..+.+|+++.|.|.+.+  +.|.|.++|+|++. ...       ..+ ....++.|.|++++.+|+ |.|+|.|.|..
T Consensus        19 ~~~v~~G~~v~l~C~~~~--~~p~~~v~W~k~~~-~~~-------~~~-~~~~~~~L~i~~v~~~D~-G~Y~C~a~n~~   85 (98)
T 1gl4_B           19 SQSVRPGADVTFICTAKS--KSPAYTLVWTRLHN-GKL-------PSR-AMDFNGILTIRNVQPSDA-GTYVCTGSNMF   85 (98)
T ss_dssp             EEEECTTCCEEEEEEEEE--SSSCCEEEEEEGGG-BCC-------CTT-EEEETTEEEECSCCGGGC-EEEEEEEECSS
T ss_pred             CeEEecCCCEEEEEeCCC--CCCCcEEEEEeCCC-CCC-------Cce-eecCCCEEEEeCCChhhC-EEEEEEecCCC
Confidence            457889999999999972  35889999999853 221       112 233578999999999999 99999999987

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.45  E-value=2.9e-14  Score=113.79  Aligned_cols=131  Identities=12%  Similarity=0.257  Sum_probs=83.7

Q ss_pred             eEEEEEeCCcEEEEeecCCCCCCc-ceeeEEeeCCCceeee---------cCCc----eE--------EEeeeEEEecCe
Q psy12724         18 YDVFVIKGNAAVFKCNLPSFVSDH-LDVVSWADTDGGQYQI---------DNQD----FV--------VSQSYTVNIMDE   75 (167)
Q Consensus        18 ~~~~v~~G~~~~l~C~a~~~~~~~-~~~i~W~k~~~~~~~~---------~~~~----~v--------~~g~y~c~~~~~   75 (167)
                      ....+.+|+++.|.|.+.+.+..+ ...|+|+|++++.+..         ++..    .+        ..|.|+|.+.+.
T Consensus       121 ~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~  200 (323)
T 2wqr_A          121 SPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHP  200 (323)
T ss_dssp             CHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECT
T ss_pred             CHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECC
Confidence            333467799999999998764321 0169999987654421         1110    11        159999987431


Q ss_pred             ----------------------EE-------EeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEe-e-----eecCC
Q psy12724         76 ----------------------HV-------LKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVD-M-----TESTD  119 (167)
Q Consensus        76 ----------------------~v-------~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~-~-----~~~~~  119 (167)
                                            .+       +.|+.+.|.|.+.+.  .|.+ .++|+||+ ..+... .     ....+
T Consensus       201 ~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~--~p~~~~v~W~k~g-~~l~~~~~~~~~~~~~~~  277 (323)
T 2wqr_A          201 HLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNF--MPEDISVQWLHNE-VQLPDARHSTTQPRKTKG  277 (323)
T ss_dssp             TSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEE--BSSCCEEEEEETT-EECCGGGEEECCCEECSS
T ss_pred             CCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeee--eCCCcEEEEEECC-EECCCCceeecCcccCCC
Confidence                                  01       128999999999753  2433 79999997 454211 0     00012


Q ss_pred             ceEEEccCCeEEEeecCcCCCCcceEEEeeecCcc
Q psy12724        120 GKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTG  154 (167)
Q Consensus       120 ~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~~  154 (167)
                      +.|.+  .+.|.|.+++.+|+ |.|+|.|.|....
T Consensus       278 g~~~~--~s~L~i~~~~~~d~-g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          278 SGFFV--FSRLEVTRAEWEQK-DEFICRAVHEAAS  309 (323)
T ss_dssp             SSEEE--EEEEEEEHHHHHHC-CCEEEEEECTTST
T ss_pred             CcEEE--EEEEEEChHHccCC-CEEEEEEEeCCCC
Confidence            22322  24699999999999 9999999998743

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.45  E-value=7.4e-14  Score=111.45  Aligned_cols=120  Identities=13%  Similarity=0.330  Sum_probs=78.6

Q ss_pred             CcEEEEeecCCCCCCcceeeEEeeCCCceeee---------cCCce-----E--------EEeeeEEEecCe--------
Q psy12724         26 NAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI---------DNQDF-----V--------VSQSYTVNIMDE--------   75 (167)
Q Consensus        26 ~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~---------~~~~~-----v--------~~g~y~c~~~~~--------   75 (167)
                      +++.|.|.+.+...+ .+.|+|+|++. .+..         +...+     +        ..|.|+|.+.+.        
T Consensus        25 ~~v~L~C~~~g~~P~-~~~v~W~k~g~-~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  102 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPG-TIQITWLEDGQ-VMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDST  102 (323)
T ss_dssp             SEEEEEEEEEEECCC-CEEEEEEETTE-ECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEE
T ss_pred             CcEEEEEEEeCeECC-CeEEEEEECCE-EcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceee
Confidence            699999999886322 25799999853 3321         11111     1        149999987531        


Q ss_pred             ------------E---------EEeCCcEEEEeeeCCccCCcce---eEEEEeCCCeeeEEee--e-ecCCceEEEccCC
Q psy12724         76 ------------H---------VLKGNSAVLKCHIPSFVADYVA---VESWISDQGEELFVDM--T-ESTDGKYLVLPSG  128 (167)
Q Consensus        76 ------------~---------v~~G~~a~l~C~~~~~~~~p~p---~i~W~k~~~~~l~~~~--~-~~~~~r~~~~~~g  128 (167)
                                  .         +.+|+++.|.|.+.+.  .|.|   .++|+|+++..+....  . ...+++|.  .++
T Consensus       103 ~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~--~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~--~~~  178 (323)
T 2wqr_A          103 KKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDL--APSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLT--VTS  178 (323)
T ss_dssp             CCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEE--CCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEE--EEE
T ss_pred             ecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEecc--CCCCCceEEEEEECCCcccccccCCCccCCCCCEE--EEE
Confidence                        0         1359999999998753  3556   8999997644432100  0 01123332  345


Q ss_pred             eEEEeecCcCCCCcceEEEeeecC
Q psy12724        129 ELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       129 ~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .|.|.+++.+|+ |.|+|.|.|..
T Consensus       179 ~L~I~~~~~~D~-G~Y~C~a~n~~  201 (323)
T 2wqr_A          179 TLPVGTRDWIEG-ETYQCRVTHPH  201 (323)
T ss_dssp             EEECCHHHHHTT-CCEEEEEECTT
T ss_pred             EEEECHHHccCC-CCEEEEEECCC
Confidence            799999999999 99999999986

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.45  E-value=8.6e-13  Score=100.90  Aligned_cols=132  Identities=15%  Similarity=0.176  Sum_probs=84.9

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-------------CceeeecC---Cc-----------eE
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-------------GGQYQIDN---QD-----------FV   63 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-------------~~~~~~~~---~~-----------~v   63 (167)
                      ..+...+.++.+.+|+++.|.| +.+.+.   +.+.|+|..             +.......   .|           .+
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~---~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL   78 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNH---LYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTL   78 (245)
T ss_dssp             CCCEEECSEEEEETTCCEEEEE-ECCTTC---CEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEE
T ss_pred             cceEeCCceEEecCCCCEEEEE-EcCCCC---CEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEE
Confidence            3466778889999999999999 555543   479999821             10010000   11           11


Q ss_pred             --------EEeeeEEEecC--------------eEEE----------------------eCCcEEEEeeeCCccCCcce-
Q psy12724         64 --------VSQSYTVNIMD--------------EHVL----------------------KGNSAVLKCHIPSFVADYVA-   98 (167)
Q Consensus        64 --------~~g~y~c~~~~--------------~~v~----------------------~G~~a~l~C~~~~~~~~p~p-   98 (167)
                              .+|.|.|.+.+              ..|.                      +|+.+.|.|.+.+.  .|.| 
T Consensus        79 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~--~p~~~  156 (245)
T 4ei6_B           79 KIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGF--YPDHV  156 (245)
T ss_dssp             EECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEE--BSSCE
T ss_pred             EECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeE--eCCCe
Confidence                    27999999862              1111                      28899999999763  2444 


Q ss_pred             eEEEEeCCCeeeEEeeee----------cCCceEEEccCCeEEEeecCcCC-CCcceEEEeeecC
Q psy12724         99 VESWISDQGEELFVDMTE----------STDGKYLVLPSGELHIRDVGPED-GYKSYQCRTKHRL  152 (167)
Q Consensus        99 ~i~W~k~~~~~l~~~~~~----------~~~~r~~~~~~g~L~I~~v~~~D-~~G~Y~C~a~n~~  152 (167)
                      .++|+||+ ..+......          +.++.|.+.  ..|.|.....+| . |.|+|.|.|..
T Consensus       157 ~v~W~~~g-~~l~~~~~~~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~~d~~-g~ytC~v~~~~  217 (245)
T 4ei6_B          157 ELSWWVNG-KEVHSGVCTDPQPLKEQPALNDSRYALS--SRLRVSATFWQNPR-NHFRCQVQFYG  217 (245)
T ss_dssp             EEEEEETT-EEECTTEEECSSCEESSTTSTTCCEEEE--EEEEEEHHHHSCTT-CEEEEEEEECC
T ss_pred             EEEEEECC-EECCCCcccccccccccccCCCCCEEEE--EEEEEcHHHhccCC-CeEEEEEEECC
Confidence            79999987 555311000          012333332  359999999999 8 99999999975

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.45  E-value=2.7e-13  Score=102.30  Aligned_cols=129  Identities=12%  Similarity=0.170  Sum_probs=85.9

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cce---eee-c--------------CCc------------eE
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQ---YQI-D--------------NQD------------FV   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~---~~~-~--------------~~~------------~v   63 (167)
                      .++....+.+|+++.|.|.+.+.+.+ .+.+.|+|++ +..   +.. .              ..|            .+
T Consensus         5 ~~p~~~~~~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   83 (220)
T 1pz5_B            5 EESGGGLVQPGGSMKLSCVASGFTFS-NYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYL   83 (220)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGG-GSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEE
T ss_pred             eccCCEEEcCCCeEEEEEEEcCCccC-CccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEE
Confidence            45778899999999999999876522 3579999864 221   100 0              011            11


Q ss_pred             --------EEeeeEEEecCe--------------------------------EEEeCCcEEEEeeeCCccCCcce-eEEE
Q psy12724         64 --------VSQSYTVNIMDE--------------------------------HVLKGNSAVLKCHIPSFVADYVA-VESW  102 (167)
Q Consensus        64 --------~~g~y~c~~~~~--------------------------------~v~~G~~a~l~C~~~~~~~~p~p-~i~W  102 (167)
                              .+|.|.|.+.+.                                .+.+|+++.|.|.+.+.  .|.| .++|
T Consensus        84 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~--~P~p~~v~W  161 (220)
T 1pz5_B           84 QMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGY--FPEPVTVKW  161 (220)
T ss_dssp             EECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEE--BSSCCEEEE
T ss_pred             EEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEE--eCCCeEEEE
Confidence                    179999987431                                01268899999999742  3778 9999


Q ss_pred             EeCCCe---eeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        103 ISDQGE---ELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       103 ~k~~~~---~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +|++..   ...+... .. ++|.+  .+.|.|.++.. |. |.|+|.|.|..
T Consensus       162 ~~~~~~~~~~~~~~~~-~~-~~~~~--~s~L~i~~~~~-~~-g~Y~C~a~n~~  208 (220)
T 1pz5_B          162 NYGALSSGVRTVSSVL-QS-GFYSL--SSLVTVPSSTW-PS-QTVICNVAHPA  208 (220)
T ss_dssp             GGGTCCTTEEECCCEE-ET-TEEEE--EEEEEECGGGT-TT-SCCEEEEEEGG
T ss_pred             ecCCcccceEEcCCcc-cC-CeEEE--EEEEEEcchhc-CC-ceEEEEEEECC
Confidence            998742   1111100 11 45543  46799999987 66 99999999987

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.45  E-value=3.2e-12  Score=94.06  Aligned_cols=114  Identities=11%  Similarity=0.150  Sum_probs=76.1

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee---------------------cCCceE------EEeeeE
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI---------------------DNQDFV------VSQSYT   69 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~---------------------~~~~~v------~~g~y~   69 (167)
                      ++.+.+.+|+++.|.|.+.+ +   .+.|.|.|++.. +..                     ++.+.+      .+|.|+
T Consensus         2 ~~~v~~~~G~~VtL~c~~~~-~---~~~i~W~~~~~~-i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~   76 (171)
T 1ccz_A            2 SQQIYGVVYGNVTFHVPSNV-P---LKEVLWKKQKDK-VAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYE   76 (171)
T ss_dssp             EEEEEEETTCCEEECCCCSS-C---CSCEEEEETTEE-EEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEE
T ss_pred             ccEEEEEcCCCEEEcCCCCC-C---cceEEEEeCCcE-EEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEE
Confidence            35678999999999999843 2   467999998642 210                     011111      279999


Q ss_pred             EEecCe--------EE----------EeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEE
Q psy12724         70 VNIMDE--------HV----------LKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELH  131 (167)
Q Consensus        70 c~~~~~--------~v----------~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~  131 (167)
                      |.+.+.        .|          ..+....|.|.+.+   .|.|.++|+|++ ..+...            ....|.
T Consensus        77 C~~~n~~~~~~~~L~V~~~~~~p~i~~~~~~~~L~C~~~~---~p~p~i~W~~~~-~~l~~~------------~~~~l~  140 (171)
T 1ccz_A           77 MESPNITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLE---GTDVELKLYQGK-EHLRSL------------RQKTMS  140 (171)
T ss_dssp             EECTTCCSCEEEEEEEECCCCCCEEEEETTTTEEEEECSS---CSSCEEEEEETT-EEEEEE------------SSSEEE
T ss_pred             EEEeCCCCcEEEEEEEECcCCCCEEEEecCCcEEEEEeCC---CCCcEEEEEECC-EECcCC------------cceEEE
Confidence            998531        11          22344579999984   488999999987 455321            122344


Q ss_pred             EeecCcCCCCcceEEEeeecCcc
Q psy12724        132 IRDVGPEDGYKSYQCRTKHRLTG  154 (167)
Q Consensus       132 I~~v~~~D~~G~Y~C~a~n~~~~  154 (167)
                      +.  ...|+ |.|+|.|.|.++.
T Consensus       141 ~~--~~~~~-g~Y~C~a~N~~~~  160 (171)
T 1ccz_A          141 YQ--WTNLR-APFKCKAVNRVSQ  160 (171)
T ss_dssp             EE--CSCCS-SCEEEEEEETTEE
T ss_pred             Ee--ccCCC-ceEEEEEEcccCc
Confidence            44  37888 9999999999844

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.45  E-value=3e-14  Score=107.28  Aligned_cols=128  Identities=15%  Similarity=0.208  Sum_probs=81.1

Q ss_pred             EEeEEE-EEeCCcEEEEeecCCCC-CCcceeeEEeeCCCceeee---------cCCce-----E--------EEeeeEEE
Q psy12724         16 QVYDVF-VIKGNAAVFKCNLPSFV-SDHLDVVSWADTDGGQYQI---------DNQDF-----V--------VSQSYTVN   71 (167)
Q Consensus        16 ~~~~~~-v~~G~~~~l~C~a~~~~-~~~~~~i~W~k~~~~~~~~---------~~~~~-----v--------~~g~y~c~   71 (167)
                      .|.... +.+|+++.|.|.+.+.+ .+....|.|+|+++. +..         .+.++     +        ..|.|+|.
T Consensus         8 ~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~-~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   86 (207)
T 2vol_A            8 PPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVE-VHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCR   86 (207)
T ss_dssp             CCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEE-ECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEE
T ss_pred             CcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCcc-ccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEE
Confidence            344333 78999999999998774 111237999999743 321         11111     1        16999998


Q ss_pred             ecCe--------E--------------E-------EeCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEeeeecCCce
Q psy12724         72 IMDE--------H--------------V-------LKGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVDMTESTDGK  121 (167)
Q Consensus        72 ~~~~--------~--------------v-------~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~~~~~~~r  121 (167)
                      +.+.        .              +       ..|+.+.|.|.+.+.  .|. +.++|+||+ ..+....    ..+
T Consensus        87 a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~--~P~~~~v~W~k~g-~~l~~~~----~~~  159 (207)
T 2vol_A           87 VNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDF--FPEDITVEWESNG-QPAENYK----NTQ  159 (207)
T ss_dssp             EECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEE--BSSCCEEEEEETT-EECSCEE----ECC
T ss_pred             EEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeE--ECCCCEEEEEECC-EeccCcc----cCC
Confidence            7430        0              1       138899999999863  244 389999997 4542110    112


Q ss_pred             EEEccCC------eEEEeecCcCCCCcceEEEeeecC
Q psy12724        122 YLVLPSG------ELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       122 ~~~~~~g------~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +....+|      .|.|.....+|. |.|+|.|.|..
T Consensus       160 ~~~~~~g~~~~~s~l~i~~~~~~~~-g~ytC~a~n~~  195 (207)
T 2vol_A          160 PIMDTDGSYFVYSKLNVQKSNWEAG-NTFTCSVLHEG  195 (207)
T ss_dssp             CEECTTSCEEEEEEEEEEHHHHSSC-CEEEEEEECTT
T ss_pred             ceECCCCCEEEEEEEEECHHHcCCC-CEEEEEEECCC
Confidence            2233444      366666667788 99999999986

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.44  E-value=1.3e-12  Score=99.68  Aligned_cols=131  Identities=18%  Similarity=0.209  Sum_probs=83.9

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cc------------e-----------eeecCC-c-eE--
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GG------------Q-----------YQIDNQ-D-FV--   63 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~------------~-----------~~~~~~-~-~v--   63 (167)
                      .+...+.++.+.+|+++.|.|.+.+ +.   +.+.|+|.. +.            .           +..+.. . .+  
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~---~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I   79 (240)
T 3q5y_A            4 GVVQSPRHIIKEKGGRSVLTCIPIS-GH---SNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNM   79 (240)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECCT-TC---CEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEE
T ss_pred             ccccCcceeeecCCCcEEEEEEeCC-CC---ceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEE
Confidence            3556788899999999999999875 22   479999831 11            0           000010 0 11  


Q ss_pred             ------EEeeeEEEecC-------------eEEE----------------------eCCcEEEEeeeCCccCCcce-eEE
Q psy12724         64 ------VSQSYTVNIMD-------------EHVL----------------------KGNSAVLKCHIPSFVADYVA-VES  101 (167)
Q Consensus        64 ------~~g~y~c~~~~-------------~~v~----------------------~G~~a~l~C~~~~~~~~p~p-~i~  101 (167)
                            .+|.|.|.+.+             ..|.                      +|+.+.|.|.+.+.  .|.| .++
T Consensus        80 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~--~P~~~~v~  157 (240)
T 3q5y_A           80 SALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGF--FPDHVELS  157 (240)
T ss_dssp             CSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEE--BSSCEEEE
T ss_pred             CcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeE--ECCCeEEE
Confidence                  27999999841             1111                      27899999999763  3555 689


Q ss_pred             EEeCCCeeeEEeee------ecCCceEEEccCCeEEEeecCcCC-CCcceEEEeeecC
Q psy12724        102 WISDQGEELFVDMT------ESTDGKYLVLPSGELHIRDVGPED-GYKSYQCRTKHRL  152 (167)
Q Consensus       102 W~k~~~~~l~~~~~------~~~~~r~~~~~~g~L~I~~v~~~D-~~G~Y~C~a~n~~  152 (167)
                      |+||+ ..+.....      ...++.|.+  ...|.|.++..+| . |.|+|.|.|..
T Consensus       158 W~~~g-~~l~~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~d~~-g~YtC~v~~~~  211 (240)
T 3q5y_A          158 WWVNG-KEVHSGVSTDPQAYKESNYSYSL--SSRLRVSATFWHNPR-NHFRCQVQFHG  211 (240)
T ss_dssp             EEETT-EEECTTEEECSSCEEEETTEEEE--EEEEEEEHHHHSCTT-CEEEEEEEECC
T ss_pred             EEECC-EECcCcEecCCceeeCCCCCEEE--EEEEEECHHHhccCC-CEEEEEEEcCC
Confidence            99997 55521100      001222322  1349999999999 5 69999999975

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.44  E-value=2.4e-13  Score=96.52  Aligned_cols=63  Identities=10%  Similarity=0.097  Sum_probs=50.2

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceE--EEc--------cCCeEEEeecCcCCCCcceEEEe
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY--LVL--------PSGELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~--~~~--------~~g~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      .++.+.|+|.+.   |+|.|.|+|+||| ..|..      +.++  .+.        ..|.|.|.+++.+|+ |.|+|+|
T Consensus        14 ~~~~~~l~c~v~---G~P~P~I~W~knG-~~l~~------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~-G~YtC~A   82 (126)
T 1he7_A           14 EMHHWCIPFSVD---GQPAPSLRWLFNG-SVLNE------TSFIFTEFLEPAANETVRHGCLRLNQPTHVNN-GNYTLLA   82 (126)
T ss_dssp             CCCEEEEEEEEC---CSSCCEEEEEETT-EECCC------CSSEEEEEECCCSSCCCEEEEEEEESCCGGGC-EEEEEEE
T ss_pred             cCccEEEEEEEe---eeCCCeEEEEECC-EECCC------CCceeEEEeeccccccccceEEEECcCCCCCC-EEEEEEE
Confidence            577899999998   5699999999998 56632      2332  111        136899999999999 9999999


Q ss_pred             eecC
Q psy12724        149 KHRL  152 (167)
Q Consensus       149 ~n~~  152 (167)
                      +|.+
T Consensus        83 ~N~~   86 (126)
T 1he7_A           83 ANPF   86 (126)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            9998

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.44  E-value=2.4e-13  Score=90.71  Aligned_cols=70  Identities=20%  Similarity=0.379  Sum_probs=53.2

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE-ccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV-LPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~-~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..+.+|+++.|.|.+.   |.|.|.++|+|++ ..+...   ....++.. ..++.|.|.+++.+|+ |.|+|.|.|..
T Consensus        18 ~~v~~G~~v~l~C~~~---g~p~p~v~W~~~~-~~~~~~---~~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~N~~   88 (100)
T 3caf_A           18 HAVPAANTVKFRCPAG---GNPMPTMRWLKNG-KEFKQE---HRIGGYKVRNQHWSLIMESVVPSDK-GNYTCVVENEY   88 (100)
T ss_dssp             EEECTTCCEEEECCEE---EESCCEEEEEETT-EECCGG---GSTTCCEEEGGGTEEEECSCCGGGC-EEEEEEEEETT
T ss_pred             EEecCCCEEEEEEEcc---ccCCCEEEEEECC-EEcccc---cccccEEEecCeEEEEEccCCcCCC-EEEEEEEEeCC
Confidence            4677899999999997   4588999999997 454321   01122233 3345899999999998 99999999987

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.43  E-value=2.3e-13  Score=90.51  Aligned_cols=79  Identities=22%  Similarity=0.319  Sum_probs=59.9

Q ss_pred             EEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcceE
Q psy12724         69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        69 ~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~  145 (167)
                      ...+.+..+.+|+++.|.|.+ +   .|.|.++|+|++ ..+.      .+.++.+..+|   .|.|.+++.+|+ |.|+
T Consensus        12 ~~~~~~~~v~~G~~v~l~C~~-~---~p~~~v~W~k~~-~~l~------~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~   79 (95)
T 2k1m_A           12 SKKPRSVEVAAGSPAVFEAET-E---RAGVKVRWQRGG-SDIS------ASNKYGLATEGTRHTLTVREVGPADQ-GSYA   79 (95)
T ss_dssp             SBCCCCEEEETTSCEEEEEEC-S---SSSCCCEEECSS-SEEC------SSTTCEEEEETTEEEEEESSCCTTCC-SEEE
T ss_pred             EeCCCcEEEeCCCcEEEEEEe-C---CCCCeEEEEECC-EECC------CCCcEEEEEcCCEEEEEEcCCCcccC-EEEE
Confidence            334467789999999999999 3   478889999997 4553      34566666554   699999999999 9999


Q ss_pred             EEeeecCcceEEEee
Q psy12724        146 CRTKHRLTGETRLSA  160 (167)
Q Consensus       146 C~a~n~~~~~~~l~~  160 (167)
                      |.|.+. +..+.|.+
T Consensus        80 C~ag~~-~~~~~l~V   93 (95)
T 2k1m_A           80 VIAGSS-KVKFDLKV   93 (95)
T ss_dssp             EEETTE-EEEEEEEE
T ss_pred             EEECCc-eEEEEEEE
Confidence            999543 34455554

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.43  E-value=5e-13  Score=88.11  Aligned_cols=76  Identities=14%  Similarity=0.278  Sum_probs=58.1

Q ss_pred             EEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEee
Q psy12724         70 VNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTK  149 (167)
Q Consensus        70 c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~  149 (167)
                      ..+.+..+.+|+++.|.|.+.   |.|.|.++|+|++ ..+.      ..      .++.|.|.+++.+|+ |.|+|.|.
T Consensus         8 ~~p~~~~v~~G~~~~l~C~~~---g~p~p~i~W~~~~-~~~~------~~------~~~~L~i~~v~~~d~-G~Y~C~a~   70 (91)
T 3bfo_A            8 VEPTSQKLMPGSTLVLQCVAV---GSPIPHYQWFKNE-LPLT------HE------TKKLYMVPYVDLEHQ-GTYWCHVY   70 (91)
T ss_dssp             ECCCCEEECTTSCEEEECEEE---CSSCCEEEEEETT-EECT------TC------CSSEEEESSCCGGGC-EEEEEEEE
T ss_pred             ECCCccEecCCCcEEEEEEec---cCCCCEEEEEcCC-eeCC------cC------CCCeEEECCCCHHhC-EEEEEEEE
Confidence            344567888999999999997   4588999999997 4442      11      246899999999999 99999999


Q ss_pred             ecCc----ceEEEeeeC
Q psy12724        150 HRLT----GETRLSATK  162 (167)
Q Consensus       150 n~~~----~~~~l~~~~  162 (167)
                      |...    ..+.|.+..
T Consensus        71 n~~g~~~s~~~~l~V~~   87 (91)
T 3bfo_A           71 NDRDSQDSKKVEIIIDE   87 (91)
T ss_dssp             CSSCEEECCCEEEEEC-
T ss_pred             cCCCCEEeeeEEEEEeh
Confidence            9872    334555543

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.43  E-value=4e-13  Score=101.49  Aligned_cols=132  Identities=14%  Similarity=0.207  Sum_probs=86.1

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cce---ee---ec------------CCc------------eE
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQ---YQ---ID------------NQD------------FV   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~---~~---~~------------~~~------------~v   63 (167)
                      .++..+.+.+|+++.|.|.+.+.+.+ .+.+.|+|++ +..   +.   .+            ..|            .+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   83 (222)
T 1q9r_B            5 VESGGGLVQSGGSLRLSCATSGFTFT-DYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYL   83 (222)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEE
T ss_pred             ecCCceeEcCCCEEEEEEEecCccCC-CCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEE
Confidence            45677889999999999999876422 2479999853 211   10   00            011            11


Q ss_pred             --------EEeeeEEEecCe---------------E-------------------EEeCCcEEEEeeeCCccCCcce-eE
Q psy12724         64 --------VSQSYTVNIMDE---------------H-------------------VLKGNSAVLKCHIPSFVADYVA-VE  100 (167)
Q Consensus        64 --------~~g~y~c~~~~~---------------~-------------------v~~G~~a~l~C~~~~~~~~p~p-~i  100 (167)
                              .+|.|.|.+.+.               .                   +.+|+++.|.|.+.+.  .|.| .+
T Consensus        84 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~--~P~p~~v  161 (222)
T 1q9r_B           84 QMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGY--FPEPVTV  161 (222)
T ss_dssp             EECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEE--BSSCCEE
T ss_pred             EECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccE--ECCCCEE
Confidence                    169999987431               0                   1258899999999752  3778 99


Q ss_pred             EEEeCCCeeeEEe-e-eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCcc
Q psy12724        101 SWISDQGEELFVD-M-TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTG  154 (167)
Q Consensus       101 ~W~k~~~~~l~~~-~-~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~~  154 (167)
                      +|+|++ ..+... . ....++.|.+  .+.|.|.+++.+|  |.|+|.|.|....
T Consensus       162 ~W~~~g-~~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d--g~y~C~a~n~~~~  212 (222)
T 1q9r_B          162 TWNSGS-LSSGVHTFPAVLQSDLYTL--SSSVTVPSSTWPS--ETVTCNVAHPASS  212 (222)
T ss_dssp             EEGGGT-BCTTEEEEEEEEETTEEEE--EEEEEEETTTTTT--SCCEEEEEEGGGT
T ss_pred             EEecCC-eEcceEeccccccCCcEEE--EEEEEECchhcCC--CeEEEEEEccCCC
Confidence            999987 343110 0 0001223433  2479999999888  9999999998743

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.43  E-value=4e-13  Score=90.33  Aligned_cols=77  Identities=27%  Similarity=0.504  Sum_probs=59.6

Q ss_pred             EecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCe---EEEeecCcCCCCcceEEE
Q psy12724         71 NIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGE---LHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        71 ~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~---L~I~~v~~~D~~G~Y~C~  147 (167)
                      .+.+..+.+|+++.|.|.+.+   .|.| ++|+|++ ..+.      .+.++.+..+|.   |.|.+++.+|+ |.|+|.
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~---~p~~-v~W~k~~-~~l~------~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~   81 (103)
T 2e7b_A           14 ALKDLEVLEGGAATLRCVLSS---VAAP-VKWCYGN-NVLR------PGDKYSLRQEGAMLELVVRNLRPQDS-GRYSCS   81 (103)
T ss_dssp             CCCCEEEESSSCEEEEEECSS---CCCS-CEEEESS-SBCC------CSSSEEEEECSSEEEEEECSCCTTTC-CCEEEE
T ss_pred             cCccEEEECCCcEEEEEEEeC---CCCC-eEEEECC-EECC------CCCcEEEEEcCCEEEEEEccCCcccC-EEEEEE
Confidence            445678899999999999974   4777 9999997 4553      356788877775   99999999999 999999


Q ss_pred             eeecCcceEEEee
Q psy12724        148 TKHRLTGETRLSA  160 (167)
Q Consensus       148 a~n~~~~~~~l~~  160 (167)
                      +.+. +..+.|.+
T Consensus        82 ~g~~-~~~~~l~V   93 (103)
T 2e7b_A           82 FGDQ-TTSATLTV   93 (103)
T ss_dssp             CSSC-BCCBCEEE
T ss_pred             ECCc-EEEEEEEE
Confidence            6553 34444444

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.43  E-value=2.8e-13  Score=92.31  Aligned_cols=81  Identities=23%  Similarity=0.384  Sum_probs=61.2

Q ss_pred             eEEEecC-eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcc
Q psy12724         68 YTVNIMD-EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKS  143 (167)
Q Consensus        68 y~c~~~~-~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~  143 (167)
                      |.-...+ ..+.+|+++.|.|.+ +   +|.|.++|+||+ ..+..     ...||.+..+|   .|.|.+++.+|+ |.
T Consensus        18 f~~~~~~~~~v~~G~~v~L~C~~-~---~p~~~v~W~k~g-~~l~~-----~~~~~~~~~~~~~~~L~I~~v~~~D~-G~   86 (104)
T 1pd6_A           18 FQKKLEPAYQVSKGHKIRLTVEL-A---DHDAEVKWLKNG-QEIQM-----SGSKYIFESIGAKRTLTISQCSLADD-AA   86 (104)
T ss_dssp             CSEECCSEEEEETTSCEEEEEEC-S---SSSSCCEEEESS-SEECC-----CSSSSEEEEETTEEEEEECSCSSSSC-EE
T ss_pred             EEEcCCCcEEEecCCCEEEEEEE-c---CCCCEEEEEECC-EECCC-----CCCeEEEEecCCEEEEEECCCCcccC-EE
Confidence            4445555 678899999999999 3   478889999998 45531     22577776666   899999999999 99


Q ss_pred             eEEEeeecCcceEEEee
Q psy12724        144 YQCRTKHRLTGETRLSA  160 (167)
Q Consensus       144 Y~C~a~n~~~~~~~l~~  160 (167)
                      |+|.|.|.. ..+.|.+
T Consensus        87 Y~C~a~~~~-~~~~l~V  102 (104)
T 1pd6_A           87 YQCVVGGEK-CSTELFV  102 (104)
T ss_dssp             EEEEETTEE-ECCEEEE
T ss_pred             EEEEECCCc-EEEEEEE
Confidence            999997643 4445554

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.42  E-value=1.3e-13  Score=103.30  Aligned_cols=132  Identities=13%  Similarity=0.184  Sum_probs=85.4

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cceee----e-----------cCCc------------eE---
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQYQ----I-----------DNQD------------FV---   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~~----~-----------~~~~------------~v---   63 (167)
                      .+|.++.+.+|+++.|.|.+.+.+.+ .+.+.|+|++ +..+.    .           ...|            .+   
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   83 (210)
T 3d9a_H            5 QESGPSLVKPSQTLSLTCSVTGDSIT-SDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLN   83 (210)
T ss_dssp             EEESCSEECTTSCEEEEEEEESSCGG-GSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             ecCCCEEecCCCcEEEEEEEecccCC-CCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEEC
Confidence            35777889999999999999876531 2579999863 22110    0           0011            11   


Q ss_pred             -----EEeeeEEEecCe----------------------------EEEeCCcEEEEeeeCCccCCcce-eEEEEeCCCee
Q psy12724         64 -----VSQSYTVNIMDE----------------------------HVLKGNSAVLKCHIPSFVADYVA-VESWISDQGEE  109 (167)
Q Consensus        64 -----~~g~y~c~~~~~----------------------------~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~  109 (167)
                           .+|.|.|.+.+.                            .+.+|+++.|.|.+.+.  .|.| .++|+|++. .
T Consensus        84 ~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~--~P~p~~v~W~~~~~-~  160 (210)
T 3d9a_H           84 SVTTEDTATYYCANWDGDYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGY--FPEPVTVTWNSGSL-S  160 (210)
T ss_dssp             SCCGGGCEEEEEEETTSSCBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEE--BSSCCEEEEGGGTB-C
T ss_pred             CCCcccCEEEEEEEecCcccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeE--ecCCcEEEEeeCCc-c
Confidence                 179999987430                            01368999999999742  3777 999999873 3


Q ss_pred             eEEeee--ecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCcc
Q psy12724        110 LFVDMT--ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTG  154 (167)
Q Consensus       110 l~~~~~--~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~~  154 (167)
                      +.....  ...++.|..  .+.|.|.++.. |. |.|+|.|.|....
T Consensus       161 ~~~~~~~~~~~~~~~~~--~s~L~i~~~~~-~~-g~Y~C~a~n~~~~  203 (210)
T 3d9a_H          161 SGVHTFPAVLQSDLYTL--SSSVTVPSSTW-PS-ETVTCNVAHPASS  203 (210)
T ss_dssp             TTEEECCCEEETTEEEE--EEEEEEEGGGT-TT-SCCEEEEEEGGGT
T ss_pred             cceEEcCCccCCCcEEE--EEEEEEcHHHc-CC-CcEEEEEEeCCCC
Confidence            211100  001133432  34699999988 55 9999999998743

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=7.4e-13  Score=90.31  Aligned_cols=74  Identities=22%  Similarity=0.325  Sum_probs=58.2

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcceEEEeeec
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      ..+.+|+++.|.|.+.    +|.|.++|+|++ ..+.      .+.++.+..+|   .|.|.+++.+|+ |.|+|.|.| 
T Consensus        23 ~~~~~G~~v~L~C~~~----~p~~~v~W~k~g-~~~~------~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n-   89 (113)
T 2cpc_A           23 VAAVRLERVVLTCELC----RPWAEVRWTKDG-EEVV------ESPALLLQKEDTVRRLVLPAVQLEDS-GEYLCEIDD-   89 (113)
T ss_dssp             EEEETTCCEEEEEEES----CTTCCCEEEETT-EECC------CBTTBEEEECSSEEEEEESSCCTTTC-EEEEEESSS-
T ss_pred             EEEEcCCeEEEEEEec----CCCCeEEEEECC-EECc------cCCCEEEEECCCEEEEEECCCCcccC-EEEEEEEec-
Confidence            4677899999999994    478889999997 5553      24566665554   799999999999 999999999 


Q ss_pred             CcceEEEeee
Q psy12724        152 LTGETRLSAT  161 (167)
Q Consensus       152 ~~~~~~l~~~  161 (167)
                      .+..+.|.+.
T Consensus        90 ~~~~~~l~V~   99 (113)
T 2cpc_A           90 ESASFTVTVT   99 (113)
T ss_dssp             CEEEEEEEEE
T ss_pred             CcEEEEEEEe
Confidence            5556666653

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.41  E-value=3.6e-13  Score=90.52  Aligned_cols=77  Identities=18%  Similarity=0.264  Sum_probs=53.7

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc------cCCeEEEeecCcCCCCcceE
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL------PSGELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~------~~g~L~I~~v~~~D~~G~Y~  145 (167)
                      +.+..+.+|+++.|.|.+.+. +.|.|.++|+|++ ..+..... ....++...      .++.|.|.+++.+|+ |.|+
T Consensus        17 p~~~~v~~G~~v~L~C~~~~~-~~~~~~i~W~k~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~   92 (112)
T 3so5_A           17 PETQSAIXGSDVSFTCSAASS-SDSPMTFAWXXDN-EALQDAEM-ENYAHLRAQGGELMEYTTILRLRNVEFTSE-GXYQ   92 (112)
T ss_dssp             CCCEEECTTCCEEEEEEEEES-CCCCCEEEEEETT-EECTTCEE-EEEEETTGGGSSCEEEEEEEEECSCCGGGC-EEEE
T ss_pred             CCCcEEECCCCEEEEEEEecC-CCCCEEEEEccCC-cccccccc-cceeeeeccCCCccccceEEEEeccccccC-CeEE
Confidence            445688899999999999743 3456899999997 44421100 000111111      136899999999999 9999


Q ss_pred             EEeeecC
Q psy12724        146 CRTKHRL  152 (167)
Q Consensus       146 C~a~n~~  152 (167)
                      |.|.|..
T Consensus        93 C~a~n~~   99 (112)
T 3so5_A           93 CVISNHF   99 (112)
T ss_dssp             EEEEETT
T ss_pred             EEEEeCC
Confidence            9999986

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.41  E-value=6.2e-13  Score=90.92  Aligned_cols=80  Identities=26%  Similarity=0.461  Sum_probs=61.9

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcce
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSY  144 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y  144 (167)
                      +...+.+..+.+|+++.|.|.+.+    + |.++|+|++ ..+.      .+.|+.+..+|   .|.|.+++.+|+ |.|
T Consensus        22 ~~~~~~~~~v~~G~~v~l~C~~~~----~-p~v~W~k~~-~~l~------~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y   88 (113)
T 2edh_A           22 FTEGLRNEEATEGATAVLRCELSK----M-APVEWWKGH-ETLR------DGDRHSLRQDGARCELQIRGLVAEDA-GEY   88 (113)
T ss_dssp             EEECCCCCEECTTSCEEEEEEESS----C-CCCEEEESS-SBCC------CSSSEEEEEETTEEEEEECSCCSTTC-EEE
T ss_pred             ccccCCceEEeCCCeEEEEEEECC----C-CcEEEEECC-EECC------CCCcEEEEECCCEEEEEECCCChhhC-EEE
Confidence            444556788999999999999963    2 678999997 4553      35788887777   799999999999 999


Q ss_pred             EEEeeecCcceEEEeee
Q psy12724        145 QCRTKHRLTGETRLSAT  161 (167)
Q Consensus       145 ~C~a~n~~~~~~~l~~~  161 (167)
                      +|.|.+ ....+.|.+.
T Consensus        89 ~C~a~~-~~~~~~l~V~  104 (113)
T 2edh_A           89 LCMCGK-ERTSAMLTVR  104 (113)
T ss_dssp             EEEETT-EEEEEEEEEC
T ss_pred             EEEeCC-CCEEEEEEEe
Confidence            999943 3455566653

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.40  E-value=1.5e-12  Score=101.04  Aligned_cols=132  Identities=15%  Similarity=0.193  Sum_probs=85.2

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cce------------------------eeecC--CceE
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQ------------------------YQIDN--QDFV   63 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~------------------------~~~~~--~~~v   63 (167)
                      ..+...+.++.+.+|+++.|.|.+.. +   .+.+.|+|.+ +..                        +..+.  +..+
T Consensus        27 ~~v~~~p~~v~v~~G~~v~L~C~~~~-~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL  102 (268)
T 3pl6_D           27 AGVSQTPSNKVTEKGKYVELRCDPIS-G---HTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTL  102 (268)
T ss_dssp             SSCBCCCSEEEEETTCCEEEEEBCBT-T---CCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEE
T ss_pred             ceeEeCCCEEEecCCCCEEEEEEeCC-C---CceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEE
Confidence            34566788899999999999999863 2   2479999831 111                        00000  0011


Q ss_pred             --------EEeeeEEEecC------------eEE-------------E---------eCCcEEEEeeeCCccCCcce-eE
Q psy12724         64 --------VSQSYTVNIMD------------EHV-------------L---------KGNSAVLKCHIPSFVADYVA-VE  100 (167)
Q Consensus        64 --------~~g~y~c~~~~------------~~v-------------~---------~G~~a~l~C~~~~~~~~p~p-~i  100 (167)
                              .+|.|.|.+.+            ..|             .         +|+++.|.|.+.+.  .|.| .+
T Consensus       103 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~--~p~~~~v  180 (268)
T 3pl6_D          103 KIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGF--YPDHVEL  180 (268)
T ss_dssp             EECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEE--BSSCEEE
T ss_pred             EECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcc--cCCCeEE
Confidence                    27999999863            011             1         28999999999753  2334 89


Q ss_pred             EEEeCCCeeeEEeee----------ecCCceEEEccCCeEEEeecCcCC-CCcceEEEeeecC
Q psy12724        101 SWISDQGEELFVDMT----------ESTDGKYLVLPSGELHIRDVGPED-GYKSYQCRTKHRL  152 (167)
Q Consensus       101 ~W~k~~~~~l~~~~~----------~~~~~r~~~~~~g~L~I~~v~~~D-~~G~Y~C~a~n~~  152 (167)
                      +|+||+ ..+.....          ...++.|.+.  ..|.|.+...+| + |.|+|.|.|..
T Consensus       181 ~W~~~g-~~l~~~~~~~~~~~~~~~~~~~~~~~~~--s~l~i~~~~~~d~~-g~YtC~v~~~~  239 (268)
T 3pl6_D          181 SWWVNG-KEVHSGVCTDPQPLKEQPALNDSRYSLS--SRLRVSATFWQNPR-NHFRCQVQFYG  239 (268)
T ss_dssp             EEEESS-SEECTTEEECSSCEESSTTCTTCCEEEE--EEEEEEHHHHSCTT-CEEEEEEEECC
T ss_pred             EEEECC-EECCCCeEeccccccccccCCCCcEEEE--EEEEEcHHHhccCC-CEEEEEEEcCC
Confidence            999987 45521100          0023444442  358888888888 8 99999999975

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.40  E-value=1.4e-13  Score=120.51  Aligned_cols=119  Identities=13%  Similarity=0.126  Sum_probs=33.2

Q ss_pred             EEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceee-----ec-------CCc----eE--------EEeeeEEEecC-
Q psy12724         20 VFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ-----ID-------NQD----FV--------VSQSYTVNIMD-   74 (167)
Q Consensus        20 ~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~-----~~-------~~~----~v--------~~g~y~c~~~~-   74 (167)
                      ..+.+|+++.|.|.+.+.+.+ .+.+.|.+++.....     ..       ...    .+        ..|.|+|.+.+ 
T Consensus       234 ~~v~~G~~v~L~C~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~  312 (772)
T 3v2a_R          234 IELSVGEKLVLNCTARTELNV-GIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSG  312 (772)
T ss_dssp             EEEETTCCEEEEEEEEECTTC-CCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECS
T ss_pred             eEEecCCcEEEEEEEecCCCC-ceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcC
Confidence            689999999999999875433 247999998653211     00       000    01        26999998743 


Q ss_pred             ---------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC
Q psy12724         75 ---------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS  127 (167)
Q Consensus        75 ---------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~  127 (167)
                                                 ..+.+|+++.|.|.+.+   .|.|.++|+||+ ..+.        .++.+..+
T Consensus       313 ~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~---~p~~~v~W~~~g-~~l~--------~~~~~~~~  380 (772)
T 3v2a_R          313 LMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLG---YPPPEIKWYKNG-IPLE--------SNHTIKAG  380 (772)
T ss_dssp             SCEEEEEEEEEEECCCC---------------------------------------------------------------
T ss_pred             CcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEee---eCCCeEEEEECC-EeCC--------CCceEccc
Confidence                                       22467999999999984   488999999997 4542        13333355


Q ss_pred             CeEEEeecCcCCCCcceEEEeeecC
Q psy12724        128 GELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       128 g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.|.|.+++.+|+ |.|+|.|.|..
T Consensus       381 ~~L~i~~v~~~d~-G~Y~C~a~n~~  404 (772)
T 3v2a_R          381 HVLTIMEVSERDT-GNYTVILTNPI  404 (772)
T ss_dssp             -------------------------
T ss_pred             eeEEEecCChhcC-ceEEEEEEECC
Confidence            7899999999999 99999999976

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=7.6e-13  Score=88.93  Aligned_cols=80  Identities=21%  Similarity=0.340  Sum_probs=61.4

Q ss_pred             EEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcceEE
Q psy12724         70 VNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        70 c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~C  146 (167)
                      -.+.+..+.+|+++.|.|.+    +.|.|.++|+|++ ..+.      .+.|+.+..++   .|.|.+++.+|+ |.|+|
T Consensus        13 ~~~~~~~v~~G~~v~l~C~~----~~p~~~v~W~k~~-~~l~------~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C   80 (103)
T 2dku_A           13 EELTNLQVEEKGTAVFTCKT----EHPAATVTWRKGL-LELR------ASGKHQPSQEGLTLRLTISALEKADS-DTYTC   80 (103)
T ss_dssp             SCCCCEEEETTSEEEEEEEC----SSCCSCCEEEESS-CBCC------SSSSEEEEEETTEEEEEEESCCTTTC-SEEEE
T ss_pred             ecCCcEEEeCCCcEEEEEEe----CCCCCeEEEEeCC-EECC------CCCeEEEEeCCCEEEEEECCCCcccC-EEEEE
Confidence            34456788999999999995    4588899999998 4553      35678777666   899999999999 99999


Q ss_pred             EeeecCcceEEEeeeC
Q psy12724        147 RTKHRLTGETRLSATK  162 (167)
Q Consensus       147 ~a~n~~~~~~~l~~~~  162 (167)
                      .+.+ ....+.|.+..
T Consensus        81 ~~g~-~~~~~~l~V~~   95 (103)
T 2dku_A           81 DIGQ-AQSRAQLLVQG   95 (103)
T ss_dssp             ECSS-CBCCEEEEEEC
T ss_pred             EeCC-ceEEEEEEEeC
Confidence            9433 34556666643

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.40  E-value=1e-12  Score=89.07  Aligned_cols=63  Identities=11%  Similarity=0.120  Sum_probs=48.9

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceE----EEcc----CCeEEEeecCcCCCCcceEEEeee
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY----LVLP----SGELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~----~~~~----~g~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      .|+.+.|+|.+.   |+|.|.++|+||+ ..+..      +.++    ....    ++.|.|.+++.+|+ |.|+|.|+|
T Consensus        15 ~~~~~~~~c~v~---G~P~P~i~W~k~g-~~l~~------~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~A~N   83 (103)
T 1wwb_X           15 SDHHWCIPFTVK---GNPKPALQWFYNG-AILNE------SKYICTKIHVTNHTEYHGCLQLDNPTHMNN-GDYTLIAKN   83 (103)
T ss_dssp             CCCEEEEEEEEE---CSSCCEEEEEETT-EEECC------CSSEEEEEEEECSSEEEEEEEEESCCGGGC-EEEEEEEEC
T ss_pred             ECcEEEEEEEEE---EeCCCEEEEEECC-EECCC------CCcEeEEEEecCCcEEEEEEEECCCCcccC-EEEEEEEEe
Confidence            578899999998   5599999999997 55532      2222    1112    23499999999999 999999999


Q ss_pred             cC
Q psy12724        151 RL  152 (167)
Q Consensus       151 ~~  152 (167)
                      ..
T Consensus        84 ~~   85 (103)
T 1wwb_X           84 EY   85 (103)
T ss_dssp             SS
T ss_pred             CC
Confidence            97

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.40  E-value=7.4e-13  Score=88.73  Aligned_cols=81  Identities=19%  Similarity=0.228  Sum_probs=59.9

Q ss_pred             eEEEecC-eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcc
Q psy12724         68 YTVNIMD-EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKS  143 (167)
Q Consensus        68 y~c~~~~-~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~  143 (167)
                      |.....+ ..+.+|+++.|.|.+.    +|.|.++|+||+ ..+.      .+.++.+..+|   .|.|.+++.+|+ |.
T Consensus        10 ~~~~~~~~~~v~~G~~v~l~C~~~----~p~~~v~W~k~g-~~i~------~~~~~~~~~~~~~~~L~I~~~~~~D~-G~   77 (100)
T 2yuv_A           10 FAKILDPAYQVDKGGRVRFVVELA----DPKLEVKWYKNG-QEIR------PSTKYIFEHKGCQRILFINNCQMTDD-SE   77 (100)
T ss_dssp             EEECCCSCEEECTTEEEEEEEEES----CTTSCEEEEESS-CBCC------CBTTEEEEEETTEEEEEEEEECTTTC-CE
T ss_pred             EEecCCCccEEcCCCcEEEEEEec----CCCceEEEEECC-EECC------CCCCEEEEecCCEEEEEEcCCCcCcC-EE
Confidence            3444445 4677999999999996    388899999997 4553      24567666555   599999999999 99


Q ss_pred             eEEEeeecCcceEEEeee
Q psy12724        144 YQCRTKHRLTGETRLSAT  161 (167)
Q Consensus       144 Y~C~a~n~~~~~~~l~~~  161 (167)
                      |+|.|. .....+.|.+.
T Consensus        78 Y~C~ag-~~~~~~~l~V~   94 (100)
T 2yuv_A           78 YYVTAG-DEKCSTELFVR   94 (100)
T ss_dssp             EEEEET-TEEEEEEEEEC
T ss_pred             EEEEEC-CceEEEEEEEe
Confidence            999993 33455566553

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.39  E-value=1.6e-12  Score=89.27  Aligned_cols=80  Identities=24%  Similarity=0.371  Sum_probs=58.5

Q ss_pred             eeEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEee-----cCcCCCC
Q psy12724         67 SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRD-----VGPEDGY  141 (167)
Q Consensus        67 ~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~-----v~~~D~~  141 (167)
                      .+...+.+..+.+|+++.|.|.+.   |.|.|.++|+|++ ..+.... .....++....+|.|.+..     ++.+|+ 
T Consensus        11 ~i~~~p~~~~v~~G~~v~L~C~~~---g~P~p~v~W~k~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~-   84 (117)
T 2v9t_A           11 RIVEHPSDLIVSKGEPATLNCKAE---GRPTPTIEWYKGG-ERVETDK-DDPRSHRMLLPSGSLFFLRIVHGRKSRPDE-   84 (117)
T ss_dssp             EEEECCCCEEECTTCCEEECCEEE---EESCCEEEEEETT-EECCCTT-TCSSCSEEECTTSCEEESSCCCBTTBCSSC-
T ss_pred             eeEcCCCCEEEcCCCcEEEEEECC---ccCCCeEEEEECC-EeccccC-CCCcceeEEecCCcEEEEEEEeCCCCcCcC-
Confidence            344445677889999999999997   4599999999997 4543210 0012345566778776664     479998 


Q ss_pred             cceEEEeeecC
Q psy12724        142 KSYQCRTKHRL  152 (167)
Q Consensus       142 G~Y~C~a~n~~  152 (167)
                      |.|+|.|.|..
T Consensus        85 G~Y~C~a~N~~   95 (117)
T 2v9t_A           85 GVYVCVARNYL   95 (117)
T ss_dssp             EEEEEEEEETT
T ss_pred             EEEEEEEEeCc
Confidence            99999999988

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.39  E-value=1.6e-12  Score=101.13  Aligned_cols=131  Identities=15%  Similarity=0.185  Sum_probs=85.5

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Ccee------------------------eecC--CceE-
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQY------------------------QIDN--QDFV-   63 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~------------------------~~~~--~~~v-   63 (167)
                      .+...+..+.+.+|+++.|.|.+.+ +.   +.+.|+|.+ +...                        ....  ...+ 
T Consensus        29 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~---~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~  104 (270)
T 3qib_D           29 KVIQTPRYLVKGQGQKAKMRCIPEK-GH---PVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLE  104 (270)
T ss_dssp             CCEEECSEEEEETTSCEEEEEECCT-TC---CEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEE
T ss_pred             eEEeCCCeEEEcCCCCEEEEEEecC-CC---ceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEE
Confidence            4566778899999999999999865 22   479999832 2110                        0000  0011 


Q ss_pred             -------EEeeeEEEecC--------------eEE------------E----------eCCcEEEEeeeCCccCCcce-e
Q psy12724         64 -------VSQSYTVNIMD--------------EHV------------L----------KGNSAVLKCHIPSFVADYVA-V   99 (167)
Q Consensus        64 -------~~g~y~c~~~~--------------~~v------------~----------~G~~a~l~C~~~~~~~~p~p-~   99 (167)
                             .+|.|.|.+.+              ..|            .          .|+++.|.|.+.+.  .|.| .
T Consensus       105 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~--~P~~~~  182 (270)
T 3qib_D          105 IQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGF--YPDHVE  182 (270)
T ss_dssp             ESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEE--BSSCEE
T ss_pred             ECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecce--eCCCeE
Confidence                   27999999862              011            1          28999999999753  3656 7


Q ss_pred             EEEEeCCCeeeEEeee----------ecCCceEEEccCCeEEEeecCcCC-CCcceEEEeeecC
Q psy12724        100 ESWISDQGEELFVDMT----------ESTDGKYLVLPSGELHIRDVGPED-GYKSYQCRTKHRL  152 (167)
Q Consensus       100 i~W~k~~~~~l~~~~~----------~~~~~r~~~~~~g~L~I~~v~~~D-~~G~Y~C~a~n~~  152 (167)
                      ++|+||+ ..+.....          ...++.|.+.  ..|.|.+...+| . |.|+|.|.|..
T Consensus       183 v~W~k~g-~~l~~~~~~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~d~~-g~YtC~v~~~~  242 (270)
T 3qib_D          183 LSWWVNG-KEVHSGVCTDPQPLKEQPALNDSRYALS--SRLRVSATFWQNPR-NHFRCQVQFYG  242 (270)
T ss_dssp             EEEEETT-EEECTTEEECSSCEESCTTSSSCCEEEE--EEEEEEHHHHHSTT-CEEEEEEEECC
T ss_pred             EEEEECC-EECCCCcccccccccccccCCCCCEEEE--EEEEEcHHHhccCC-CeEEEEEEecC
Confidence            8999987 55531100          0023344432  358899998888 8 99999999975

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.39  E-value=2.3e-13  Score=92.23  Aligned_cols=76  Identities=25%  Similarity=0.516  Sum_probs=58.6

Q ss_pred             EecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCe---EEEeecCcCCCCcceEEE
Q psy12724         71 NIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGE---LHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        71 ~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~---L~I~~v~~~D~~G~Y~C~  147 (167)
                      .+.+..+.+|+++.|.|.+.+     .|.++|+|++ ..+.      .+.|+.+..++.   |.|.+++.+|+ |.|+|.
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~-----~p~v~W~k~~-~~~~------~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~   80 (108)
T 2dm7_A           14 DLKTKEASEGATATLQCELSK-----VAPVEWKKGP-ETLR------DGGRYSLKQDGTRCELQIHDLSVADA-GEYSCM   80 (108)
T ss_dssp             CCBCCEEETTSCEEEEEEBSS-----SCCCEEESSS-SBCC------SSSSCEEEEETTEEEEEESSCCTTTC-SEEEEE
T ss_pred             cCCcEEEeCCCcEEEEEEeCC-----CCeeEEEECC-EECC------CCCCEEEEecCCEEEEEECCCCcccC-EEEEEE
Confidence            345678899999999999963     2678999997 4543      356777776665   99999999999 999999


Q ss_pred             eeecCcceEEEee
Q psy12724        148 TKHRLTGETRLSA  160 (167)
Q Consensus       148 a~n~~~~~~~l~~  160 (167)
                      |.|. ...+.|.+
T Consensus        81 a~n~-~~~~~l~V   92 (108)
T 2dm7_A           81 CGQE-RTSATLTV   92 (108)
T ss_dssp             ETTE-EEEEECEE
T ss_pred             EcCC-EEEEEEEE
Confidence            9875 34444444

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.39  E-value=1.7e-12  Score=111.04  Aligned_cols=126  Identities=17%  Similarity=0.260  Sum_probs=81.7

Q ss_pred             EeEEEEEeCCcEEEEeec-CCCCCCcceeeEEeeCCCce-------------------eeecCCceE------EEeeeEE
Q psy12724         17 VYDVFVIKGNAAVFKCNL-PSFVSDHLDVVSWADTDGGQ-------------------YQIDNQDFV------VSQSYTV   70 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a-~~~~~~~~~~i~W~k~~~~~-------------------~~~~~~~~v------~~g~y~c   70 (167)
                      .++..+.+|+++.|.|.+ .+.+.   +.|.|+|++...                   +..++.+.+      .+|.|+|
T Consensus       373 ~~~~~~~~G~~v~L~C~~~~~~~~---~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C  449 (581)
T 3o3u_N          373 AQNITARIGEPLVLKCKGAPKKPP---QRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRC  449 (581)
T ss_dssp             CEEEEEETTSCEEECCTTCCSSSS---CEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEE
T ss_pred             hcccceecCCcEEEeeeecCCCCC---ceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEE
Confidence            456789999999999999 55443   479999985421                   001111111      2799999


Q ss_pred             EecC---------------------------eEEEeCCcE-EEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceE
Q psy12724         71 NIMD---------------------------EHVLKGNSA-VLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY  122 (167)
Q Consensus        71 ~~~~---------------------------~~v~~G~~a-~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~  122 (167)
                      .+.+                           ..+..|... .|.|.+.+  +.|.|.++|+||+ ..+..     .++++
T Consensus       450 ~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~--~~P~~~i~W~~~g-~~l~~-----~~~~~  521 (581)
T 3o3u_N          450 QAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEG--SYPAGTLSWHLDG-KPLVP-----NEKGV  521 (581)
T ss_dssp             EEECTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEE--EBSCCEEEEEETT-EECCT-----TSTTE
T ss_pred             EEEcCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCC--CCCCCeEEEEECC-EECCC-----CCCeE
Confidence            8743                           112345454 56999974  2488999999997 45421     12222


Q ss_pred             EEc-------cC------CeEEEeecCcCC-CCcceEEEeeecCcc
Q psy12724        123 LVL-------PS------GELHIRDVGPED-GYKSYQCRTKHRLTG  154 (167)
Q Consensus       123 ~~~-------~~------g~L~I~~v~~~D-~~G~Y~C~a~n~~~~  154 (167)
                      .+.       .+      ..|.|++++.+| . |.|+|.|+|...+
T Consensus       522 ~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~-~~y~C~~~n~~~~  566 (581)
T 3o3u_N          522 SVKEQTRRHPETGLFTLQSELMVTPARGGDPR-PTFSCSFSPGLPR  566 (581)
T ss_dssp             EEEEEEEECTTTCCEEEEEEEEECCCTTSCSC-CCEEEEEECSSCS
T ss_pred             EEEeeeEEcCCCceEEEEEEEEEEeccccCCC-ceEEEEEeccCCC
Confidence            211       11      369999999555 6 8999999999743

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=7.3e-13  Score=88.86  Aligned_cols=74  Identities=23%  Similarity=0.414  Sum_probs=58.0

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcceEEEeee
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      +..+.+|+++.|.|.+.    +|.|.++|+||+ ..+.      .+.++.+..+|   .|.|.+++.+|+ |.|+|.|.|
T Consensus        20 ~~~v~~G~~v~L~C~~~----~p~~~v~W~k~g-~~~~------~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a~~   87 (102)
T 2eo1_A           20 EVQAEAGASATLSCEVA----QAQTEVTWYKDG-KKLS------SSSKVRVEAVGCTRRLVVQQAGQAEA-GEYSCEAGG   87 (102)
T ss_dssp             EEEEETTCCEEECCBCS----CSSSCCEEEETT-EECC------CCSSEEEEEETTEEEEEETTCCTTTC-SCEEEEETT
T ss_pred             cEEEeCCCcEEEEEEec----CCCCceEEEECC-EECC------CCCCEEEEEcCCEEEEEECCCCcccC-EEEEEEcCC
Confidence            35788999999999996    378899999997 5553      24567666555   799999999999 999999987


Q ss_pred             cCcceEEEee
Q psy12724        151 RLTGETRLSA  160 (167)
Q Consensus       151 ~~~~~~~l~~  160 (167)
                      .. ..+.|.+
T Consensus        88 ~~-~~~~l~V   96 (102)
T 2eo1_A           88 QQ-LSFRLQV   96 (102)
T ss_dssp             EE-CCEEEEE
T ss_pred             Cc-EEEEEEE
Confidence            64 3455555

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.38  E-value=8.3e-12  Score=93.70  Aligned_cols=129  Identities=14%  Similarity=0.204  Sum_probs=86.7

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecC-Cc----------eE--------EEeeeEEE
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN-QD----------FV--------VSQSYTVN   71 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~-~~----------~v--------~~g~y~c~   71 (167)
                      +.| ..+.+..+.+|+++.|.|.+.+.|.+   .+.|+|++. .+..+. .+          .+        ..|.|+|.
T Consensus        20 P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p---~i~W~~~g~-~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   94 (215)
T 3mtr_A           20 PKL-QGPVAVYTWEGNQVNITCEVFAYPSA---TISWFRDGQ-LLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCT   94 (215)
T ss_dssp             EEE-ECCSEEEECTTCCEEEEEEEEEESCC---EEEEEETTE-ESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEE
T ss_pred             Ccc-cCCceEEEECCCCEEEEEEEeecCCC---EEEEEECCe-ECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEE
Confidence            345 46777899999999999999988764   799999853 343221 11          11        26999998


Q ss_pred             ecCe-----------------------EEEeCCcEEEEeeeCCcc-CCcce--eEEEEeCCCeeeEEeeeecCCceEEEc
Q psy12724         72 IMDE-----------------------HVLKGNSAVLKCHIPSFV-ADYVA--VESWISDQGEELFVDMTESTDGKYLVL  125 (167)
Q Consensus        72 ~~~~-----------------------~v~~G~~a~l~C~~~~~~-~~p~p--~i~W~k~~~~~l~~~~~~~~~~r~~~~  125 (167)
                      +.+.                       ....+.++.|.|..+... +.|.+  .+.|.+++. ....      ...+.+.
T Consensus        95 a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~-~~w~------~~~~~~~  167 (215)
T 3mtr_A           95 AVNRIGQESLEFILVQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGE-EVWH------SKWYDAK  167 (215)
T ss_dssp             EECSSCEEEEEEEEEECCCCCCCEEEEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTC-CCCE------EEEEEHH
T ss_pred             EEECCCceEEEEEEEECCCCCCCcceEEEEecceEEEEEecCCccCCCceEEEEEEEEECCC-Cccc------ccccccc
Confidence            8541                       123577889999865321 33544  478988763 2110      1111111


Q ss_pred             ---cCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        126 ---PSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       126 ---~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                         .++.|.|.++.+.|+ |.|+|.|.|..
T Consensus       168 ~~~~~~~l~i~~L~~~~~-y~~~~~A~N~~  196 (215)
T 3mtr_A          168 EASMEGIVTIVGLKPETT-YAVRLAALNGK  196 (215)
T ss_dssp             HHHHHTEEEEECCCTTCE-EEEEEEEEESS
T ss_pred             cccccccEEECCCCCCCE-EEEEEEEEeCC
Confidence               127899999999998 99999999987

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.37  E-value=1.4e-12  Score=90.92  Aligned_cols=76  Identities=20%  Similarity=0.346  Sum_probs=56.5

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-eecCCceEEEcc----CCeEEEeecCcCCCCcceEE
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-TESTDGKYLVLP----SGELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-~~~~~~r~~~~~----~g~L~I~~v~~~D~~G~Y~C  146 (167)
                      +.+..+.+|+++.|.|.+.+   .|.|.++|+++++..+.... ....++|+.+..    ++.|.|.+++.+|+ |.|.|
T Consensus         8 ~~~~~v~~G~~v~L~C~~~~---~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C   83 (124)
T 3rbg_A            8 TETITVEEGQTLTLKCVTSL---RKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDE-GVYKC   83 (124)
T ss_dssp             EEEEEEETTSCEEEEEECCC---CTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGC-EEEEE
T ss_pred             CccEEEcCCCCEEEEeEEec---cCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHC-EEEEE
Confidence            34567889999999999984   48899999987754332100 001345665543    46899999999999 99999


Q ss_pred             Eeeec
Q psy12724        147 RTKHR  151 (167)
Q Consensus       147 ~a~n~  151 (167)
                      .|.|.
T Consensus        84 ~a~n~   88 (124)
T 3rbg_A           84 LHYSD   88 (124)
T ss_dssp             EEESS
T ss_pred             EEEcC
Confidence            99997

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.37  E-value=3.5e-12  Score=100.03  Aligned_cols=133  Identities=15%  Similarity=0.218  Sum_probs=85.5

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cce---ee--ec-----------CCc-----------e
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQ---YQ--ID-----------NQD-----------F   62 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~---~~--~~-----------~~~-----------~   62 (167)
                      ..+...+.++.+.+|+++.|.|.+.+.+   .+.+.|+|++ +..   +.  .+           ..|           .
T Consensus        25 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~s  101 (279)
T 2wbj_D           25 AVVSQHPSWVISKSGTSVKIECRSLDFQ---ATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLST  101 (279)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSSC---EEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEE
T ss_pred             ceEEeCCCeEEecCCCeEEEEEEeCCCC---CCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEE
Confidence            3466778899999999999999997654   3589999864 110   10  00           011           1


Q ss_pred             E--------EEeeeEEEecC----------------eE------------E--E--------eCCcEEEEeeeCCccCCc
Q psy12724         63 V--------VSQSYTVNIMD----------------EH------------V--L--------KGNSAVLKCHIPSFVADY   96 (167)
Q Consensus        63 v--------~~g~y~c~~~~----------------~~------------v--~--------~G~~a~l~C~~~~~~~~p   96 (167)
                      +        .+|.|.|.+.+                ..            +  .        +|+.+.|.|.+.+.  .|
T Consensus       102 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~--~P  179 (279)
T 2wbj_D          102 LTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGF--YP  179 (279)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEE--BS
T ss_pred             EEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeE--cC
Confidence            1        27999998754                00            1  1        37899999999753  24


Q ss_pred             c-eeEEEEeCCCeeeEEeee----------ecCCceEEEccCCeEEEeecCcCC-CCcceEEEeeecC
Q psy12724         97 V-AVESWISDQGEELFVDMT----------ESTDGKYLVLPSGELHIRDVGPED-GYKSYQCRTKHRL  152 (167)
Q Consensus        97 ~-p~i~W~k~~~~~l~~~~~----------~~~~~r~~~~~~g~L~I~~v~~~D-~~G~Y~C~a~n~~  152 (167)
                      . |.++|+||+ ..+.....          +..++.|.+.  ..|.|.+...+| . |.|+|.|.|..
T Consensus       180 ~~~~v~W~k~g-~~l~~~~~~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~d~~-~~YtC~v~n~~  243 (279)
T 2wbj_D          180 DHVELSWWVNG-KEVHSGVSTDPQPLKEQPALNDSRYSLS--SRLRVSATFWQNPR-NHFRCQVQFYG  243 (279)
T ss_dssp             SCEEEEEEETT-EECCTTEEECSSCEESSTTSTTCCEEEE--EEEECCSTTTTCTT-CEEEEEEEECC
T ss_pred             CCcEEEEEECC-EECCCCcccccccccccccCCCCcEEEE--EEEEEChHHhccCC-CEEEEEEEeCC
Confidence            3 799999987 45421100          0012223222  248888888876 5 67999999975

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=9e-13  Score=87.68  Aligned_cols=68  Identities=26%  Similarity=0.505  Sum_probs=55.0

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEE
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~  147 (167)
                      +...+.+..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.      ..      .++.|.|.+++.+|+ |.|+|.
T Consensus        13 i~~~p~~~~v~~G~~v~l~C~~~g---~p~~~v~W~k~~-~~~~------~~------~~~~L~i~~v~~~d~-G~Y~C~   75 (96)
T 2ens_A           13 LVVEPEGGAVAPGGTVTLTCEVPA---QPSPQIHWMKDG-VPLP------LP------PSPVLILPEIGPQDQ-GTYSCV   75 (96)
T ss_dssp             CEEESTTSEECTTCEEEEECCCSS---CSSCCCCCEESS-SBCS------SC------CCSEEEEESCCTTTC-EEEECE
T ss_pred             EEECCCCCEEcCCCeEEEEEEEcc---CCCCEEEEEECC-EECc------CC------CCCEEEECCCCcccC-EEEEEE
Confidence            444556778899999999999974   588899999987 4442      11      357899999999999 999999


Q ss_pred             eeecC
Q psy12724        148 TKHRL  152 (167)
Q Consensus       148 a~n~~  152 (167)
                      |.|..
T Consensus        76 a~n~~   80 (96)
T 2ens_A           76 ATHSS   80 (96)
T ss_dssp             ECCSS
T ss_pred             EEeCC
Confidence            99964

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.36  E-value=5.6e-12  Score=87.31  Aligned_cols=80  Identities=16%  Similarity=0.231  Sum_probs=58.8

Q ss_pred             EEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCe----eeEEee--------eecCCceEEEccCCeEEEeecC
Q psy12724         69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGE----ELFVDM--------TESTDGKYLVLPSGELHIRDVG  136 (167)
Q Consensus        69 ~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~----~l~~~~--------~~~~~~r~~~~~~g~L~I~~v~  136 (167)
                      +..+....+.+|++|.|+|...+  + +.+.++|+|++..    .+....        .+...+|..+.+||+|.|+|++
T Consensus         4 ~i~~~p~~~~~G~~v~L~~~~~p--~-~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ngSL~I~nvt   80 (111)
T 2qsq_A            4 TIESTPFNVAEGKEVLLLVHNLP--Q-HLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNII   80 (111)
T ss_dssp             EEEEESSEEETTSCEEEEEESCC--S-SEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTSCEEECSCC
T ss_pred             EEEeccceeccCCCEEEEEeCCC--C-CceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCCcEEEccCc
Confidence            44555568899999999998531  2 4567999997521    111100        0113579999999999999999


Q ss_pred             cCCCCcceEEEeeecC
Q psy12724        137 PEDGYKSYQCRTKHRL  152 (167)
Q Consensus       137 ~~D~~G~Y~C~a~n~~  152 (167)
                      .+|+ |.|+|.+.|..
T Consensus        81 ~~D~-G~Ytc~v~~~~   95 (111)
T 2qsq_A           81 QNDA-GFYTLHVIKSD   95 (111)
T ss_dssp             GGGC-EEEEEEEEETT
T ss_pred             ccCC-eEEEEEEEeCC
Confidence            9999 99999999974

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.36  E-value=1.2e-11  Score=94.97  Aligned_cols=132  Identities=15%  Similarity=0.193  Sum_probs=81.0

Q ss_pred             ceeeEEeE--EEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCce---eeecCCce--E------EEeeeEEEecC----
Q psy12724         12 YYEAQVYD--VFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQ---YQIDNQDF--V------VSQSYTVNIMD----   74 (167)
Q Consensus        12 ~~~~~~~~--~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~---~~~~~~~~--v------~~g~y~c~~~~----   74 (167)
                      .|++++.+  +.|.+|+++.|.|.+ +.+.+ .+.|.|.+.+...   ........  +      ..|.|.|.+.+    
T Consensus         7 ~~~V~pp~~~v~v~~G~sv~L~C~a-~~p~P-~~~i~W~~~~~~l~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~   84 (210)
T 1gsm_A            7 PLQVEPPEPVVAVALGASRQLTCRL-ACADR-GASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT   84 (210)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEE-CCSST-TCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CEEEeCCCCceEEeCCCCEEEEEEC-CCCCC-CcceEEeecccccCcEEecCCccEEEECccCcccCceEEEEEEeCCCc
Confidence            46666665  589999999999999 66643 3379999976321   11111111  1      26999998732    


Q ss_pred             --------------e-E-----EEeCCcEEEEeeeCCccCCc----ceeEEEEeCCCeeeEEeee-e------------c
Q psy12724         75 --------------E-H-----VLKGNSAVLKCHIPSFVADY----VAVESWISDQGEELFVDMT-E------------S  117 (167)
Q Consensus        75 --------------~-~-----v~~G~~a~l~C~~~~~~~~p----~p~i~W~k~~~~~l~~~~~-~------------~  117 (167)
                                    . .     ...|+.+ |.|.+.+.  .|    .+.++|+||+ ..|..... +            .
T Consensus        85 ~~~~~~ltV~~~P~~~~i~~~~~~~g~~~-l~C~a~g~--~P~~~~~lti~Wlk~~-~~L~~~~~~~~~~~~~~~~~~~~  160 (210)
T 1gsm_A           85 FQHTVQLLVYAFPNQLTVSPAALVPGDPE-VACTAHKV--TPVDPNALSFSLLVGG-QELEGAQALGPEVQEEEEEPQGD  160 (210)
T ss_dssp             EEEEEEEEEEBCCSEEEEESSSBCTTCCE-EEEEEEEE--BCCCTTTEEEEEEETT-EECTTCEECCCEEEECTTCCSSC
T ss_pred             eEEEEEEEEEecCCCcEEccceEEeCCce-EEEEeCCC--CCCCCCCcEEEEEECC-EEcccccccccceecccccccCC
Confidence                          1 1     1258888 99999753  25    4689999998 55521100 0            0


Q ss_pred             CCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        118 TDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       118 ~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ...-|.+  ...|.+......|. +.|+|.|.+.+
T Consensus       161 ~~~~~~v--ts~~~~~~~~~D~~-~~~tC~a~~~L  192 (210)
T 1gsm_A          161 EDVLFRV--TERWRLPPLGTPVP-PALYCQATMRL  192 (210)
T ss_dssp             CCCCEEE--EEEEECCCCCSSCC-SEEEEEEEEEE
T ss_pred             cceEEEE--EEEEeecCCcccCC-ceEEEEEEeeC
Confidence            0001111  12344446666665 89999999988

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.36  E-value=3.2e-13  Score=101.48  Aligned_cols=121  Identities=13%  Similarity=0.223  Sum_probs=76.5

Q ss_pred             EeCCcEEEEeecCCCCCC-cceeeEEeeCCCceeee----------cCCce---EE---------EeeeEEEecCe----
Q psy12724         23 IKGNAAVFKCNLPSFVSD-HLDVVSWADTDGGQYQI----------DNQDF---VV---------SQSYTVNIMDE----   75 (167)
Q Consensus        23 ~~G~~~~l~C~a~~~~~~-~~~~i~W~k~~~~~~~~----------~~~~~---v~---------~g~y~c~~~~~----   75 (167)
                      .+|+++.|.|.+.+.+.. +-..|+|+|++.. +..          ++...   .+         .|.|+|.+.+.    
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~-~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~   94 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVE-VHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA   94 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEE-ECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCcc-ccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCc
Confidence            689999999999876531 1137999998632 211          11111   11         69999987430    


Q ss_pred             ------------------EE-------EeCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEeeeecCCceEEEccCCe
Q psy12724         76 ------------------HV-------LKGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVDMTESTDGKYLVLPSGE  129 (167)
Q Consensus        76 ------------------~v-------~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~  129 (167)
                                        .+       +.|+.+.|.|.+.+.  .|. +.++|+||+ ..+...    ...++....+|.
T Consensus        95 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~--~P~~~~v~W~k~g-~~~~~~----~~~~~~~~~~gt  167 (207)
T 1l6x_A           95 PIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGF--YPSDIAVEWESNG-QPENNY----KTTPPVLDSDGS  167 (207)
T ss_dssp             CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEE--BSSCCEEEEEETT-EEECCE----EECCCEECTTSC
T ss_pred             ceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCe--ECCCeEEEEEECC-eeccCc----cccCceECCCCC
Confidence                              01       136679999999863  244 489999997 455311    011222334553


Q ss_pred             ------EEEeecCcCCCCcceEEEeeecC
Q psy12724        130 ------LHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       130 ------L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                            |.|.....+|. |.|+|.|.|..
T Consensus       168 ~~~~s~l~i~~~~~~~~-g~YtC~a~n~~  195 (207)
T 1l6x_A          168 FFLYSKLTVDKSRWQQG-NVFSCSVMHEA  195 (207)
T ss_dssp             EEEEEEEEEEHHHHHTT-CCEEEEEECTT
T ss_pred             EEEEEEEEECHHHcCCC-CEEEEEEEcCC
Confidence                  55555556788 99999999986

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.35  E-value=7.6e-13  Score=93.58  Aligned_cols=82  Identities=15%  Similarity=0.233  Sum_probs=59.2

Q ss_pred             eeeEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeee--c--CCceEEEc------cCCeEEEeec
Q psy12724         66 QSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTE--S--TDGKYLVL------PSGELHIRDV  135 (167)
Q Consensus        66 g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~--~--~~~r~~~~------~~g~L~I~~v  135 (167)
                      +.+...+.+..+.+|+++.|.|.+.   +.|.|.++|+|++. .+......  .  ...++.+.      .++.|.|.++
T Consensus        22 P~~~~~p~~~~v~~G~~v~L~C~~~---g~P~p~i~W~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v   97 (137)
T 3qr2_A           22 AGFVQAPLSQQRWVGGSVELHCEAV---GSPVPEIQWWFEGQ-GPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL   97 (137)
T ss_dssp             CEEEECCCCEEEETTSCEEEEEEEE---CSSCCEEEEEEEES-STTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSC
T ss_pred             CeEEcCCCCEEEeCCCCEEEEEEEe---eecCCeEEEEECCC-CccccceeecccCcccceEEecccccccceEEEECCC
Confidence            4455566778899999999999997   45999999999863 32110000  0  01233322      4568999999


Q ss_pred             CcCCCCcceEEEeeecC
Q psy12724        136 GPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n~~  152 (167)
                      +.+|+ |.|+|.|.|..
T Consensus        98 ~~~D~-G~Y~C~a~N~~  113 (137)
T 3qr2_A           98 VEEDT-GTYECRASNDP  113 (137)
T ss_dssp             CGGGC-EEEEEEEECCT
T ss_pred             CcccC-EEEEEEEEecC
Confidence            99999 99999999987

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.35  E-value=8.9e-13  Score=106.13  Aligned_cols=131  Identities=16%  Similarity=0.276  Sum_probs=85.5

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cceee----e------------cCCc------------eE--
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQYQ----I------------DNQD------------FV--   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~~----~------------~~~~------------~v--   63 (167)
                      .++.++.+.+|+++.|.|.+.+.+.+ .+.+.|+|++ +..+.    .            ...|            .+  
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (344)
T 1za6_B            5 VQSGAEVVKPGASVKISCKASGYTFT-DHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVEL   83 (344)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCTT-SSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred             eCCCCeEEeCCCcEEEEEEcCCcccc-ccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEE
Confidence            45667899999999999999876422 2579999873 22210    0            0011            11  


Q ss_pred             ------EEeeeEEEecCe----------E----------E---------EeCCcEEEEeeeCCccCCcc-eeEEEEeCCC
Q psy12724         64 ------VSQSYTVNIMDE----------H----------V---------LKGNSAVLKCHIPSFVADYV-AVESWISDQG  107 (167)
Q Consensus        64 ------~~g~y~c~~~~~----------~----------v---------~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~  107 (167)
                            .+|.|.|.+.+.          .          +         .+|+++.|.|.+.+.  .|. |.++|+|++.
T Consensus        84 ~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~--~P~~~~v~W~k~g~  161 (344)
T 1za6_B           84 SSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDY--FPEPVTVSWNSGAL  161 (344)
T ss_dssp             CSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEE--BSSCCCEEETTTTB
T ss_pred             CCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeE--ECCCeEEEEecCCc
Confidence                  279999987430          0          1         268899999999753  254 6899999873


Q ss_pred             eeeE-Eee--eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCc
Q psy12724        108 EELF-VDM--TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT  153 (167)
Q Consensus       108 ~~l~-~~~--~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~  153 (167)
                       .+. ...  ....+++|...  +.|.|.+++.+|  |.|+|.|.|...
T Consensus       162 -~~~~~~~~~~~~~~~~~~~~--s~L~i~~~~~~d--G~Y~C~a~n~~~  205 (344)
T 1za6_B          162 -TSGVHTFPAVLQSSGLYSLS--SVVTVPSSSLGT--QTYICNVNHKPS  205 (344)
T ss_dssp             -CTTEEECCCEECTTSCEEEE--EEEEEETTHHHH--BCEEEEEEEGGG
T ss_pred             -cCceeECCCeECCCCCEEEE--EEEEEcHHHcCC--CcEEEEEEeCCC
Confidence             321 000  00123455432  479999998855  999999999873

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.34  E-value=7.6e-12  Score=95.04  Aligned_cols=130  Identities=18%  Similarity=0.329  Sum_probs=84.1

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Ccee---e-ec------------CCc------------eE--
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQY---Q-ID------------NQD------------FV--   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~---~-~~------------~~~------------~v--   63 (167)
                      .++....+.+|+++.|.|.+.+.+.. .+.+.|+|++ +..+   . .+            ..|            .+  
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   83 (225)
T 1op3_H            5 VESGGGLVKAGGSLILSCGVSNFRIS-AHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQM   83 (225)
T ss_dssp             EEECCEEEETTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             EcCCCeEecCCCCEEEEEEecCcccC-CceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEE
Confidence            45777899999999999999876521 2469998864 2211   0 00            011            11  


Q ss_pred             ------EEeeeEEEecCe------------------EE-------------------EeCCcEEEEeeeCCccCCcce-e
Q psy12724         64 ------VSQSYTVNIMDE------------------HV-------------------LKGNSAVLKCHIPSFVADYVA-V   99 (167)
Q Consensus        64 ------~~g~y~c~~~~~------------------~v-------------------~~G~~a~l~C~~~~~~~~p~p-~   99 (167)
                            .+|.|.|.+.+.                  .|                   .+|+++.|.|.+.+.  .|.| .
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~--~P~p~~  161 (225)
T 1op3_H           84 HKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDY--FPEPVT  161 (225)
T ss_dssp             CSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEE--BSSCCE
T ss_pred             CCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeE--ECCCeE
Confidence                  169999986431                  01                   258899999999753  3666 8


Q ss_pred             EEEEeCCCeeeE-Eee--eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        100 ESWISDQGEELF-VDM--TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       100 i~W~k~~~~~l~-~~~--~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++|+|++. .+. ...  ....+++|.+  .+.|.|.+++.+|  |.|+|.|.|..
T Consensus       162 v~W~~~~~-~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~~--g~Y~C~a~n~~  212 (225)
T 1op3_H          162 VSWNSGAL-TSGVHTFPAVLQSSGLYSL--SSVVTVPSSSLGT--QTYICNVNHKP  212 (225)
T ss_dssp             EECCTTSC-CTTCEECCCEECTTSCEEE--EEEEEEEGGGTTC--CCCCEEEEEGG
T ss_pred             EEEecCCC-cCCeEecCceeCCCCCEEE--EEEEEEechhcCC--CcEEEEEEcCC
Confidence            99999873 321 000  0012344443  2469999998776  99999999976

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.34  E-value=1.7e-11  Score=92.87  Aligned_cols=132  Identities=16%  Similarity=0.321  Sum_probs=86.2

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cce---ee-ec------------CCc------------eE-
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQ---YQ-ID------------NQD------------FV-   63 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~---~~-~~------------~~~------------~v-   63 (167)
                      ..++....+.+|+++.|.|.+.+.+.. .+.+.|+|.+ +..   +. .+            ..|            .+ 
T Consensus         4 ~~q~~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   82 (220)
T 2fbj_H            4 LLESGGGLVQPGGSLKLSCAASGFDFS-KYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQ   82 (220)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEE
T ss_pred             EecCCCeEecCCCcEEEEEEecCccCC-CceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEE
Confidence            346677999999999999999876421 2469998853 211   11 00            011            11 


Q ss_pred             -------EEeeeEEEecCe-----------------------EE--------EeCCcEEEEeeeCCccCCcc--eeEEEE
Q psy12724         64 -------VSQSYTVNIMDE-----------------------HV--------LKGNSAVLKCHIPSFVADYV--AVESWI  103 (167)
Q Consensus        64 -------~~g~y~c~~~~~-----------------------~v--------~~G~~a~l~C~~~~~~~~p~--p~i~W~  103 (167)
                             .+|.|.|.+.+.                       .+        ..|+.+.|.|.+.+.  .|.  +.++|+
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~~~g~--~P~~~~~v~W~  160 (220)
T 2fbj_H           83 MSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCLIHDY--FPSGTMNVTWG  160 (220)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEEEEEE--BSCCCEEEEES
T ss_pred             ECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEEEEeE--ECCCcEEEEEe
Confidence                   169999976320                       01        258899999999753  254  789999


Q ss_pred             eCCCeeeEE-ee--eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        104 SDQGEELFV-DM--TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       104 k~~~~~l~~-~~--~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |++. .+.. ..  ....++.|.+.  ..|.|.+...+|+ |.|+|.|.|..
T Consensus       161 ~~~~-~~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~~d~-g~ytC~v~n~~  208 (220)
T 2fbj_H          161 KSGK-DITTVNFPPALASGGRYTMS--NQLTLPAVECPEG-ESVKCSVQHDS  208 (220)
T ss_dssp             CCCS-SCEEEECCCEECSSSCEEEE--EEEEECGGGSCTT-CEEEEEEEETT
T ss_pred             cCCE-ecceEecCceECCCCCEEEE--EEEEECHHHcCCC-CeEEEEEEcCC
Confidence            9973 4311 10  00123445442  3599999999998 99999999987

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.34  E-value=2.4e-12  Score=88.93  Aligned_cols=83  Identities=16%  Similarity=0.126  Sum_probs=55.0

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEe-eeecCCceEE----EccCCeEEEeecCcCCCCcceEEEee
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVD-MTESTDGKYL----VLPSGELHIRDVGPEDGYKSYQCRTK  149 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~-~~~~~~~r~~----~~~~g~L~I~~v~~~D~~G~Y~C~a~  149 (167)
                      ..+.+|+++.|.|.+.+. ..|.+.++|+|++. .+... ........+.    ...++.|.|.+++.+|+ |.|+|.|.
T Consensus        18 v~v~~G~~v~L~C~~~g~-p~~~~~i~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~a~   94 (122)
T 3s35_X           18 IELSVGEKLVLNCTARTE-LNVGIDFNWEYPSS-KHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ-GLYTCAAS   94 (122)
T ss_dssp             EEEEETCCEEEEEEEEEC-TTCCCEEEEECSCT-TCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGC-EEEEEEEE
T ss_pred             EEEecCCeEEEEEEEEcC-CCCcEEEEEECCCc-ccCCceeeeeccccccCCceeeEEEEEEECCCCcccC-EEEEEEEc
Confidence            378899999999999743 24567899999874 22100 0000111111    11345799999999999 99999999


Q ss_pred             ecC---cceEEEee
Q psy12724        150 HRL---TGETRLSA  160 (167)
Q Consensus       150 n~~---~~~~~l~~  160 (167)
                      |..   ...+.|.+
T Consensus        95 n~~g~~~~~~~l~V  108 (122)
T 3s35_X           95 SGLMTKKNSTFVRV  108 (122)
T ss_dssp             CSSCEEEEEEEEEE
T ss_pred             cCCCceEEEEEEEE
Confidence            987   33445544

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.33  E-value=7.2e-12  Score=92.28  Aligned_cols=75  Identities=15%  Similarity=0.182  Sum_probs=57.2

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeee
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      ..+.+|+++.|+|...+. ..|.|.|+|+|++ ..+....    .....+|+.+..+|.|.|++++.+|+ |.|+|.|.|
T Consensus         6 v~~~~G~~v~L~c~~~~~-~~~~~~i~W~k~~-~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~-G~Y~C~~~n   82 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQM-TDDIDEVRWERGS-TLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDS-GTYNVTVYS   82 (176)
T ss_dssp             EEEETTSCEEECCTTCCC-CTTEEEEEEEETT-EEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGC-EEEEEEEEE
T ss_pred             EEEEcCCcEEEcCCCCCc-ccccccEEEEeCC-ceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccC-EEEEEEEEe
Confidence            456899999999954221 2578899999997 4442110    00136788888899999999999999 999999999


Q ss_pred             cC
Q psy12724        151 RL  152 (167)
Q Consensus       151 ~~  152 (167)
                      ..
T Consensus        83 ~~   84 (176)
T 1hng_A           83 TN   84 (176)
T ss_dssp             TT
T ss_pred             CC
Confidence            76

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=1.2e-12  Score=90.13  Aligned_cols=82  Identities=18%  Similarity=0.292  Sum_probs=60.6

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc-cC---CeEEEeecCcCCCCcc
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL-PS---GELHIRDVGPEDGYKS  143 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~-~~---g~L~I~~v~~~D~~G~  143 (167)
                      +...+.+..+.+|+++.|.|.+.   +.|.|.++|+||+ ..+.      .+.++.+. .+   ..|.|.+++.+|+ |.
T Consensus        16 ~~~~~~~~~v~~G~~v~l~C~~~---g~p~p~v~W~k~g-~~l~------~~~~~~~~~~~~~~~~L~I~~v~~~D~-G~   84 (115)
T 2cr6_A           16 IIEDLEDVDVQEGSSATFRCRIS---PANYEPVHWFLDK-TPLH------ANELNEIDAQPGGYHVLTLRQLALKDS-GT   84 (115)
T ss_dssp             EEECCCEEEEETTSCEECCCEEE---STTCCSCEEEESS-CEEC------CSSSCCBCCBTTTBCCBEECSCCTTTC-EE
T ss_pred             EeccCccEEEeCCCcEEEEEEEc---CCCCCccEEEECC-EECC------CCCcEEEEEcCCCEEEEEEcCCChhhC-EE
Confidence            34445677899999999999997   4588899999997 4553      24455444 22   2699999999999 99


Q ss_pred             eEEEeeecCcceEEEeee
Q psy12724        144 YQCRTKHRLTGETRLSAT  161 (167)
Q Consensus       144 Y~C~a~n~~~~~~~l~~~  161 (167)
                      |+|.+.+. ...+.|.+.
T Consensus        85 Y~C~~g~~-~~~~~L~V~  101 (115)
T 2cr6_A           85 IYFEAGDQ-RASAALRVT  101 (115)
T ss_dssp             EEEEETTE-ECCEEEEEE
T ss_pred             EEEEECCe-eEEEEEEEE
Confidence            99996544 345566553

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.33  E-value=7.5e-13  Score=109.75  Aligned_cols=125  Identities=18%  Similarity=0.318  Sum_probs=79.5

Q ss_pred             EEeCCcEEEEeecCCC-CCCcceeeEEeeCCCce-ee--e---cCCce-----E-E------EeeeEEEecCe-------
Q psy12724         22 VIKGNAAVFKCNLPSF-VSDHLDVVSWADTDGGQ-YQ--I---DNQDF-----V-V------SQSYTVNIMDE-------   75 (167)
Q Consensus        22 v~~G~~~~l~C~a~~~-~~~~~~~i~W~k~~~~~-~~--~---~~~~~-----v-~------~g~y~c~~~~~-------   75 (167)
                      +.+|+++.|.|.+.+. |.+  ..+.|.|++... +.  +   ....+     + +      .|.|+|.+.+.       
T Consensus       135 ~~~g~~v~L~C~~~g~~P~p--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~dg~Y~C~a~n~~~~~~~~  212 (444)
T 1igt_B          135 DTTGSSVTLGCLVKGYFPEP--VTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVD  212 (444)
T ss_dssp             CCCSSCEEEEEEEEEEBSSC--CEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTTSCCEEEEEETTTTEEEE
T ss_pred             CCCCCcEEEEEEEcceeCCC--cEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCCCeEEEEEEeCCCCcceE
Confidence            4689999999999875 432  279999986531 00  0   00111     0 0      28899976320       


Q ss_pred             ---------------------------E-----------EEeCCcEEEEeeeCCccC-CcceeEEEEeCCCeeeEEee--
Q psy12724         76 ---------------------------H-----------VLKGNSAVLKCHIPSFVA-DYVAVESWISDQGEELFVDM--  114 (167)
Q Consensus        76 ---------------------------~-----------v~~G~~a~l~C~~~~~~~-~p~p~i~W~k~~~~~l~~~~--  114 (167)
                                                 .           +.+|+++.|.|.+.+... .|.+.++|+|++ ..+....  
T Consensus       213 ~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~-~~~~~~~~~  291 (444)
T 1igt_B          213 KKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNN-VEVHTAQTQ  291 (444)
T ss_dssp             EECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETT-EECSSTTCB
T ss_pred             EEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECC-ccccCcccc
Confidence                                       1           145999999999975310 124689999998 4442110  


Q ss_pred             --eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        115 --TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       115 --~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                        ....++++.  ..+.|.|.+++.+|+ |.|+|.|.|..
T Consensus       292 ~~~~~~~~~~~--~~~~L~I~~v~~~d~-G~Y~C~a~n~~  328 (444)
T 1igt_B          292 THREDYNSTLR--VVSALPIQHQDWMSG-KEFKCKVNNKD  328 (444)
T ss_dssp             CCEEECSSSEE--EEEEEECCHHHHHTT-CEEEEEEECTT
T ss_pred             cceeCCCCcEE--EEEEEEEcHHHhccC-CcEEEEEEcCC
Confidence              000111221  234799999999999 99999999986

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.32  E-value=1.5e-11  Score=95.09  Aligned_cols=111  Identities=18%  Similarity=0.275  Sum_probs=77.3

Q ss_pred             EEEEeCCcEEEEeecCC-CCCCcceeeEEeeCCCceeee----cCCce----E------EEe--eeEEEecC--------
Q psy12724         20 VFVIKGNAAVFKCNLPS-FVSDHLDVVSWADTDGGQYQI----DNQDF----V------VSQ--SYTVNIMD--------   74 (167)
Q Consensus        20 ~~v~~G~~~~l~C~a~~-~~~~~~~~i~W~k~~~~~~~~----~~~~~----v------~~g--~y~c~~~~--------   74 (167)
                      ..+.+|+++.|.|.+.+ .|.+ -..++|+|++. .+..    +++..    +      ..|  .|+|.+.+        
T Consensus        13 ~~v~~G~~v~l~C~~~g~~p~p-~~~v~W~k~~~-~l~~~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~   90 (265)
T 2oz4_A           13 RVLEVDTQGTVVCSLDGLFPVS-EAQVHLALGDQ-RLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETL   90 (265)
T ss_dssp             SEEETTEEEEEEEEEESCSCGG-GCEEEEEETTE-ECCCEEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEE
T ss_pred             ceEecCCCEEEEEEccCCCCCc-ceEEEEEeCCE-ECCceEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcEEE
Confidence            36889999999999988 5532 12799999864 2321    22211    1      134  59998632        


Q ss_pred             -----------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCc
Q psy12724         75 -----------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGP  137 (167)
Q Consensus        75 -----------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~  137 (167)
                                       ..+.+|+++.|.|.+.     |.|.++|  |+ ..+.      ..+     ..+.|.|..+..
T Consensus        91 ~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~-----p~~~i~W--~g-~~~~------~~~-----~~~~l~i~~~~~  151 (265)
T 2oz4_A           91 QTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH-----PRAKVTL--NG-VPAQ------PLG-----PRAQLLLKATPE  151 (265)
T ss_dssp             EEEEEECCCCCEEEESCSEEETTCEEEEEEECC-----TTSEEEE--SS-CSSS------CCS-----SEECCEEECCGG
T ss_pred             EEEEEeCCCCceeecCCceecCCCcEEEEEEcc-----CCCEEEE--CC-EEcc------CCC-----CcEEEEEccccc
Confidence                             2456799999999985     7889999  55 4442      111     125699999999


Q ss_pred             CCCCcceEEEeeecC
Q psy12724        138 EDGYKSYQCRTKHRL  152 (167)
Q Consensus       138 ~D~~G~Y~C~a~n~~  152 (167)
                      +|+ |.|+|.|.|..
T Consensus       152 ~~~-g~Y~C~a~n~~  165 (265)
T 2oz4_A          152 DNG-RSFSCSATLEV  165 (265)
T ss_dssp             GTT-EEEEEEEEEEC
T ss_pred             cCC-ceEEEEEEcCC
Confidence            998 99999999754

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.32  E-value=1.4e-12  Score=85.95  Aligned_cols=60  Identities=28%  Similarity=0.400  Sum_probs=48.2

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeec-CcCCCCcceEEEeee
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDV-GPEDGYKSYQCRTKH  150 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v-~~~D~~G~Y~C~a~n  150 (167)
                      ++...++.|++|+|.|.+.+   +|.  |+|+||+ ..+.       .+     .++.|.|.++ +.+|+ |.|+|.|.+
T Consensus         6 p~~~v~~~G~~v~L~C~~~g---~P~--i~W~kdg-~~l~-------~~-----~~~~L~I~~v~~~~Ds-G~Y~C~A~t   66 (82)
T 3r08_E            6 IEYKVSISGTSVELTCPLDS---DEN--LKWEKNG-QELP-------QK-----HDKHLVLQDFSEVEDS-GYYVCYTPA   66 (82)
T ss_dssp             CCCEEEEETTEEEEECSSCC---CSS--CEEEETT-EECT-------TC-----CSSCCBCCSCCTTTTC-SCEEEECSS
T ss_pred             CceeEEEcCCeEEEEEECCC---CCc--EEEEECC-EECc-------CC-----CCCEEEECccCccCcC-EEEEEEEcc
Confidence            44567889999999999984   463  8999997 4542       11     4678999996 78999 999999986

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.32  E-value=1.9e-12  Score=99.29  Aligned_cols=131  Identities=14%  Similarity=0.290  Sum_probs=82.7

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCC-CCCcceeeEEeeCCCceeee-------cCCc-e-----E--------EEeeeEEEe
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSF-VSDHLDVVSWADTDGGQYQI-------DNQD-F-----V--------VSQSYTVNI   72 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~-~~~~~~~i~W~k~~~~~~~~-------~~~~-~-----v--------~~g~y~c~~   72 (167)
                      ..|....+.+|+++.|.|.+.++ |.++ ..|+|+|++...+..       +.+. +     +        ..|.|+|.+
T Consensus        18 ~~p~~~~v~~G~~v~L~C~~~g~~P~~p-~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~   96 (231)
T 2w59_A           18 IPPSPGELYISLDAKLRCLVVNLPSDSS-LSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTV   96 (231)
T ss_dssp             ECCCHHHHHTSCCCEEEEEEEEESCCTT-CEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEE
T ss_pred             eCcChhhcccCCceEEEEEEeCccCCCC-eEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEE
Confidence            45555667899999999999885 4221 269999875433111       1111 1     1        158999987


Q ss_pred             cCe--------------------EE--E-------eCCcEEEEeeeCCccCCc-ceeEEEEeCCCeeeEEee------ee
Q psy12724         73 MDE--------------------HV--L-------KGNSAVLKCHIPSFVADY-VAVESWISDQGEELFVDM------TE  116 (167)
Q Consensus        73 ~~~--------------------~v--~-------~G~~a~l~C~~~~~~~~p-~p~i~W~k~~~~~l~~~~------~~  116 (167)
                      .+.                    .+  .       .|+.+.|.|.+.++  .| .+.++|+||+ ..+....      ..
T Consensus        97 ~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~--~P~~~~v~W~k~g-~~l~~~~~~~~~~~~  173 (231)
T 2w59_A           97 QHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGF--RPRDIEIRWLRDH-RAVPATEFVTTAVLP  173 (231)
T ss_dssp             ECTTCSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEE--BSSCCEEEEEETT-EECCGGGCEECCCEE
T ss_pred             EcCCCCCceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEec--cCCCcEEEEEECC-EECCCcccccCcccc
Confidence            430                    11  1       15679999999864  23 4789999997 4552110      00


Q ss_pred             c--------CC-ceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        117 S--------TD-GKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       117 ~--------~~-~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .        .+ +.|.+.  ..|.|.....+|. |.|+|.|.|..
T Consensus       174 ~~~~~~~~~~d~gt~~~~--s~L~i~~~~~~~~-g~YtC~v~n~~  215 (231)
T 2w59_A          174 EERTANGAGGDGDTFFVY--SKMSVETAKWNGG-TVFACMAVHEA  215 (231)
T ss_dssp             CCTTSCC---CCCCEEEE--EEEEEEHHHHHTT-CCEEEEEECTT
T ss_pred             CcccccccCCCCCeEEEE--EEEEEeHHHcCCC-CcEEEEEEcCC
Confidence            0        11 222221  3588999999998 99999999987

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.32  E-value=1.8e-12  Score=108.69  Aligned_cols=72  Identities=22%  Similarity=0.430  Sum_probs=57.0

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+..+.+|+++.|.|.+.   |+|.|.++|+|++. .+...   ...+|+.+..+|.|.|.+++.+|+ |.|+|.|.|..
T Consensus       393 ~~~~v~~G~~v~l~C~~~---g~P~p~i~W~~~~~-~~~~~---~~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~a~N~~  464 (477)
T 2id5_A          393 QQVFVDEGHTVQFVCRAD---GDPPPAILWLSPRK-HLVSA---KSNGRLTVFPDGTLEVRYAQVQDN-GTYLCIAANAG  464 (477)
T ss_dssp             EEEEEETTCCEEECCCEE---EESCCEEEEECTTS-CBC----------CEECTTSCEEESSCCSTTC-EEEEEEEEETT
T ss_pred             ccEEEeCCCeEEEEEecc---ccCCCEEEEEECCc-ccccc---CCCceEEeCCCCEEEEeeCChHHC-EEEEEEEEeCC
Confidence            345788999999999998   45999999999984 44221   135678888899999999999999 99999999987

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.31  E-value=6e-12  Score=96.67  Aligned_cols=114  Identities=18%  Similarity=0.297  Sum_probs=56.3

Q ss_pred             EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceEEEeeeEEEecCeEEEeCCcEEEEeeeCCccCCc--
Q psy12724         19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVVSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADY--   96 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v~~g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p--   96 (167)
                      ...|..++++.|.|.|.+..... ..+.|..               ...+.-.+.+..+.+|++|.|.|.+.+.   |  
T Consensus         8 ~~~v~~~dsg~Y~C~a~g~~~~~-~~~~~~~---------------~~~~~~~p~~~~v~~G~~v~L~C~~~~~---~~~   68 (254)
T 2c1o_A            8 AELVRPGTSVKLSCKASGYSFTN-YWMNWLR---------------ELVMTQSPLTLSVTIGQPASISCKSSQS---LLY   68 (254)
T ss_dssp             ----------------------------------------------CCCEEEECSEEEECTTSCEEEEEEESSC---CBC
T ss_pred             cceecCCccEEEEEcCchhhhhh-hhhheee---------------ceeEEeCCceEEecCCCcEEEEeeccCc---ccc
Confidence            34588999999999998543210 0111211               1112223456788899999999999753   5  


Q ss_pred             ---ceeEEEEeCC-CeeeEE--e----eeecCCceEEEccCC---eEEEeecCcCCCCcceEEEeeecC
Q psy12724         97 ---VAVESWISDQ-GEELFV--D----MTESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        97 ---~p~i~W~k~~-~~~l~~--~----~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                         .|.++|+|++ +..+..  .    ......+|+.+..++   .|.|.+++.+|+ |.|+|.|.|..
T Consensus        69 ~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~~  136 (254)
T 2c1o_A           69 SNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDL-GIYYCVQGSHF  136 (254)
T ss_dssp             SSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-SEEEEEECSSS
T ss_pred             cCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccC-EEEEEEEEcCc
Confidence               4889999853 222210  0    000123677665433   799999999999 99999999974

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.31  E-value=2.2e-11  Score=94.09  Aligned_cols=129  Identities=16%  Similarity=0.210  Sum_probs=83.5

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cce---e-------------------e--ecCC--ceE----
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQ---Y-------------------Q--IDNQ--DFV----   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~---~-------------------~--~~~~--~~v----   63 (167)
                      ..|..+.+.+|+++.|.|.+.+.+.   +.+.|+|.. +..   +                   .  .+..  +.+    
T Consensus         6 q~p~~v~v~~G~~v~L~C~~~~~~~---~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~   82 (253)
T 3to4_D            6 QNPRWRLVPRGQAVNLRCILKNSQY---PWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVAN   82 (253)
T ss_dssp             EECSEEEEESSCCEEEEEECSCTTC---CCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEES
T ss_pred             eCCCeEEEeCCCcEEEEEEeCCCCc---ceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCC
Confidence            4577899999999999999887664   369998731 110   0                   0  0000  111    


Q ss_pred             --EEeeeEEEecC----------------eEE--------------E--------eCCcEEEEeeeCCccCCcce-eEEE
Q psy12724         64 --VSQSYTVNIMD----------------EHV--------------L--------KGNSAVLKCHIPSFVADYVA-VESW  102 (167)
Q Consensus        64 --~~g~y~c~~~~----------------~~v--------------~--------~G~~a~l~C~~~~~~~~p~p-~i~W  102 (167)
                        .+|.|.|.+.+                ..|              .        .|+.+.|.|.+.+.  .|.| .++|
T Consensus        83 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~--~P~~i~v~W  160 (253)
T 3to4_D           83 MSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGF--YPDHVELSW  160 (253)
T ss_dssp             CSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEE--BSSCEEEEE
T ss_pred             hhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceE--ECCcEEEEE
Confidence              27999998741                111              1        25899999999863  3666 7899


Q ss_pred             EeCCCeeeEEeeee----------cCCceEEEccCCeEEEeecCcCC-CCcceEEEeeecC
Q psy12724        103 ISDQGEELFVDMTE----------STDGKYLVLPSGELHIRDVGPED-GYKSYQCRTKHRL  152 (167)
Q Consensus       103 ~k~~~~~l~~~~~~----------~~~~r~~~~~~g~L~I~~v~~~D-~~G~Y~C~a~n~~  152 (167)
                      +||+ ..+......          +.++.|.+.  ..|.|.....+| . |.|+|.|.|..
T Consensus       161 ~k~g-~~l~~~~~~~~~~~~~~~~~~~g~~~~~--s~l~i~~~~~~d~~-~~ytC~v~h~~  217 (253)
T 3to4_D          161 WVNG-KEVHSGVSTDPQPLKEQPALNDSRYALS--SRLRVSATFWQNPR-NHFRCQVQFYG  217 (253)
T ss_dssp             EETT-EEECTTEEECSSCEESSTTCTTCCEEEE--EEEEEEHHHHTCTT-CEEEEEEEECC
T ss_pred             EECC-EECCCceecccccccccccCCCCCEEEE--EEEEECHHHhccCC-CEEEEEEEeCC
Confidence            9987 555311000          023344332  368888888888 6 79999999975

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.31  E-value=3.4e-12  Score=96.65  Aligned_cols=70  Identities=17%  Similarity=0.267  Sum_probs=55.0

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC---C--eEEEeecCcCCCCcceEE
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS---G--ELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~---g--~L~I~~v~~~D~~G~Y~C  146 (167)
                      ..+..+.+|+.+.|.|.+.+  ++|.|.++|+||+ ..+.      .+.++.+..+   |  .|.|.+++.+|+ |.|+|
T Consensus         9 ~~~~~v~eg~~v~l~c~~~~--~~P~p~i~W~kng-~~l~------~~~~~~~~~~~~~g~~~L~I~~v~~~D~-G~Y~C   78 (207)
T 3rbs_A            9 ELAVEILEKGQVRFWMQAEK--LSGNAKVNYIFNE-KEIF------EGPKYKMHIDRNTGIIEMFMEKLQDEDE-GTYTF   78 (207)
T ss_dssp             EEEEEECGGGCEEEEEECSC--CCSCCEEEEEETT-EEEC------SSSSCEEEECTTTCEEEEEESCCCGGGC-EEEEE
T ss_pred             CCceEEEeCCeEEEEEEEec--CCCCCEEEEEECC-EECc------cCCCEEEEEeCCCCEEEEEECCCChhhC-EEEEE
Confidence            34567899999999999864  4699999999998 5664      2344444323   3  599999999999 99999


Q ss_pred             Eeeec
Q psy12724        147 RTKHR  151 (167)
Q Consensus       147 ~a~n~  151 (167)
                      .|.|.
T Consensus        79 ~a~Ng   83 (207)
T 3rbs_A           79 QLQDG   83 (207)
T ss_dssp             EEEET
T ss_pred             EEECC
Confidence            99994

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.31  E-value=1.6e-11  Score=93.65  Aligned_cols=131  Identities=15%  Similarity=0.185  Sum_probs=81.6

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cce---e---eec----------CCc------------eE-
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQ---Y---QID----------NQD------------FV-   63 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~---~---~~~----------~~~------------~v-   63 (167)
                      ..++....+.+|+++.|.|.+.+.+.. .+.+.|+|++ +..   +   ..+          ..|            .+ 
T Consensus         4 l~qp~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   82 (227)
T 1mju_H            4 LQQPGAELVKPGASVKLSCKASGYTFT-NYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQ   82 (227)
T ss_dssp             EECCSEEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             EcCCCCeEEcCCCCEEEEEEecCCccc-cceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEE
Confidence            345778899999999999999876521 2469999864 221   1   000          011            11 


Q ss_pred             -------EEeeeEEEecCe------------------------------EEEeCCcEEEEeeeCCccCCcce-eEEEEeC
Q psy12724         64 -------VSQSYTVNIMDE------------------------------HVLKGNSAVLKCHIPSFVADYVA-VESWISD  105 (167)
Q Consensus        64 -------~~g~y~c~~~~~------------------------------~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~  105 (167)
                             .+|.|.|.+.+.                              .+..|+.+.|.|.+.+.  .|.| .++|+|+
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~--~P~p~~v~W~~~  160 (227)
T 1mju_H           83 LSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGY--FPEPVTLTWNSG  160 (227)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEE--BSSCCEEEEGGG
T ss_pred             ECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecE--eCCCeEEEEecC
Confidence                   169999986320                              12358899999999753  3666 8999998


Q ss_pred             CCeeeEEeeee--cCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        106 QGEELFVDMTE--STDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       106 ~~~~l~~~~~~--~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      + ..+......  ...++|..  .+.|.|.+++.+|  |.|+|.|.|..
T Consensus       161 g-~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~~--g~Y~C~a~n~~  204 (227)
T 1mju_H          161 S-LSSGVHTFPAVLQSDLYTL--SSSVTVTSSTWPS--QSITCNVAHPA  204 (227)
T ss_dssp             T-BCTTEEECCCEEETTEEEE--EEEEEECTTTTTT--SCCEEEEEEGG
T ss_pred             C-CcCCcEECCceecCCeEEE--EEEEEEchhhcCC--CeEEEEEEECC
Confidence            7 332110000  01134432  3579999988855  99999999976

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.30  E-value=4.7e-12  Score=103.35  Aligned_cols=80  Identities=21%  Similarity=0.400  Sum_probs=62.0

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+..+.+|+++.|.|.+.   | |.|.++|+|+++..+...   ....|+.+ .+|.|.|.+++.+|+ |.|+|.|.|..
T Consensus       254 ~~v~v~~G~~~~l~C~~~---g-p~p~i~W~~~~~~~~~~~---~~~~r~~~-~~~~L~I~~v~~~D~-G~Y~C~a~N~~  324 (361)
T 2xot_A          254 SAWEAHLGDTLTIRCDTK---Q-QGMTKVWVSPSNEQVLSQ---GSNGSVSV-RNGDLFFKKVQVEDG-GVYTCYAMGET  324 (361)
T ss_dssp             CCCEEETTCCEEECCCCS---S-TTCEEEEECTTSCBCCSC---CSSSSEEE-ETTEEEESSCCTTSC-EEEEEEEECSS
T ss_pred             cCceecCCCeEEEEeEee---C-CCCeEEEEeCCCeeEeec---ccCCceEe-ecCeEEEeecCcccC-EEEEEEEecCC
Confidence            456889999999999996   5 888999999875333211   13457877 889999999999999 99999999986


Q ss_pred             ---cceEEEeee
Q psy12724        153 ---TGETRLSAT  161 (167)
Q Consensus       153 ---~~~~~l~~~  161 (167)
                         +..+.+.+.
T Consensus       325 g~~~~~~~l~V~  336 (361)
T 2xot_A          325 FNETLSVELKVY  336 (361)
T ss_dssp             CEEEEEEEEEEE
T ss_pred             CccEEEEEEEEE
Confidence               334455553

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.29  E-value=6.5e-12  Score=86.50  Aligned_cols=61  Identities=13%  Similarity=0.133  Sum_probs=47.4

Q ss_pred             CcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc-------cCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         81 NSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL-------PSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        81 ~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~-------~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..+.|.|.+.|   +|.|.++|+||+ ..+..      +.++.+.       .++.|.|.+++.+|+ |.|+|.|.|..
T Consensus        21 ~~~~l~C~~~g---~P~p~i~W~k~g-~~l~~------~~~~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~a~N~~   88 (118)
T 1wwc_A           21 LEHCIEFVVRG---NPPPTLHWLHNG-QPLRE------SKIIHVEYYQEGEISEGCLLFNKPTHYNN-GNYTLIAKNPL   88 (118)
T ss_dssp             CEEEEEEEEEC---SSCCEEEEEETT-EECCC------SSSEEEEEEECSSEEEEEEEEESCCGGGC-EEEEEEEEETT
T ss_pred             cceEEEEEeee---eCCCeEEEEECC-EECCC------CCceeEEEeccCccccEEEEECCCChhcC-EEEEEEEECCC
Confidence            56788999984   599999999997 55532      2222221       356899999999998 99999999987

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.29  E-value=9.9e-12  Score=90.51  Aligned_cols=76  Identities=20%  Similarity=0.456  Sum_probs=59.8

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEE
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~  147 (167)
                      |.-.+.+..+.+|+++.|.|.+.+   .|.|.+.|+|++ ..+..    ....|+.+..++.|.|.+++.+|+ |.|+|.
T Consensus         5 ~~~~~~~~~v~~G~~v~l~C~~~~---~p~~~v~W~~~~-~~~~~----~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~   75 (189)
T 2v5t_A            5 FREVVSPQEFKQGEDAEVVCRVSS---SPAPAVSWLYHN-EEVTT----ISDNRFAMLANNNLQILNINKSDE-GIYRCE   75 (189)
T ss_dssp             EEECCSSEEEETTSCEEECCEEEC---SSCCEEEEEC------CB----CCCTTEEECTTSCEEETTCCGGGC-EEEEEE
T ss_pred             eeccCCCEEEeCCCcEEEEEEEcC---CCCCEEEEEECC-cccee----ccCCeEEEecCCCEEEeeCCHhHC-cEEEEE
Confidence            444456778999999999999974   488899999997 44432    246788888899999999999999 999999


Q ss_pred             eeecC
Q psy12724        148 TKHRL  152 (167)
Q Consensus       148 a~n~~  152 (167)
                      +.|..
T Consensus        76 ~~~~~   80 (189)
T 2v5t_A           76 GRVEA   80 (189)
T ss_dssp             EEETT
T ss_pred             EEEcC
Confidence            99886

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.28  E-value=2e-11  Score=89.25  Aligned_cols=74  Identities=23%  Similarity=0.367  Sum_probs=59.8

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcce
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSY  144 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y  144 (167)
                      +.-.+.+..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.      ...++.+..++   .|.|.+++.+|+ |.|
T Consensus        10 ~~~~~~~~~v~~G~~v~l~C~~~~---~p~~~v~W~~~~-~~~~------~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y   78 (197)
T 3lcy_A           10 IRKEMKDVTTKLGEAAQLSCQIVG---RPLPDIKWYRFG-KELI------QSRKYKMSSDGRTHTLTVMTEEQEDE-GVY   78 (197)
T ss_dssp             EEECCCCEEEETTSEEEEEEEEEE---ESCCEEEEEETT-EEEC------CCSSEEEEESSSEEEEEEECCSGGGC-EEE
T ss_pred             ccccCCceEEeCCCcEEEEEEEec---CCCCEEEEEECC-EECC------CCccEEEEeCCCEEEEEEecCCccCC-EEE
Confidence            344456678899999999999974   488899999997 4553      34566666666   799999999999 999


Q ss_pred             EEEeeecC
Q psy12724        145 QCRTKHRL  152 (167)
Q Consensus       145 ~C~a~n~~  152 (167)
                      +|.|.|..
T Consensus        79 ~C~~~n~~   86 (197)
T 3lcy_A           79 TCIATNEV   86 (197)
T ss_dssp             EEEEECSS
T ss_pred             EEEEECCC
Confidence            99999876

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.28  E-value=2.4e-11  Score=89.26  Aligned_cols=75  Identities=21%  Similarity=0.392  Sum_probs=58.7

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc--cCC--eEEEeecCcCCCCcc
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL--PSG--ELHIRDVGPEDGYKS  143 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~--~~g--~L~I~~v~~~D~~G~  143 (167)
                      +.-.+.+..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+..     ...++.+.  .+|  .|.|.+++.+|+ |.
T Consensus         7 ~~~~~~~~~v~~G~~v~l~C~~~~---~p~~~v~W~~~~-~~~~~-----~~~~~~~~~~~~~~~~L~i~~~~~~d~-G~   76 (197)
T 2j8h_A            7 FKEELRNLNVRYQSNATLVCKVTG---HPKPIVKWYRQG-KEIIA-----DGLKYRIQEFKGGYHQLIIASVTDDDA-TV   76 (197)
T ss_dssp             EEECCCCEEEETTSCEEEEEEEEC---SSCCEEEEEETT-EECCC-----CSSSEEEEEETTTEEEEEECSCCGGGC-SE
T ss_pred             EEEcCCccEEcCCCEEEEEEEEee---cCCCEEEEEECC-EECcc-----CCCcEEEEEcCCCEEEEEECcCCHHhC-EE
Confidence            344456678899999999999974   588999999997 45532     23455443  345  899999999999 99


Q ss_pred             eEEEeeecC
Q psy12724        144 YQCRTKHRL  152 (167)
Q Consensus       144 Y~C~a~n~~  152 (167)
                      |+|.|.|..
T Consensus        77 Y~C~~~n~~   85 (197)
T 2j8h_A           77 YQVRATNQG   85 (197)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEECC
Confidence            999999976

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.27  E-value=5.4e-12  Score=105.08  Aligned_cols=123  Identities=13%  Similarity=0.219  Sum_probs=77.2

Q ss_pred             EEeCCcEEEEeecCCCCCCc-ceeeEEeeCCCceee---------ecCCce---EE---------EeeeEEEecCe----
Q psy12724         22 VIKGNAAVFKCNLPSFVSDH-LDVVSWADTDGGQYQ---------IDNQDF---VV---------SQSYTVNIMDE----   75 (167)
Q Consensus        22 v~~G~~~~l~C~a~~~~~~~-~~~i~W~k~~~~~~~---------~~~~~~---v~---------~g~y~c~~~~~----   75 (167)
                      +.+|+++.|.|.+.+.+.++ ...|+|+|++.....         .++...   .+         .|.|+|.+.+.    
T Consensus       261 ~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~  340 (457)
T 1hzh_H          261 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA  340 (457)
T ss_dssp             HCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSS
T ss_pred             cccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCC
Confidence            56799999999999875431 127999998643210         011111   11         69999988530    


Q ss_pred             ------------------EE-------EeCCcEEEEeeeCCccCCc-ceeEEEEeCCCeeeEEeeeecCCceEEEccCC-
Q psy12724         76 ------------------HV-------LKGNSAVLKCHIPSFVADY-VAVESWISDQGEELFVDMTESTDGKYLVLPSG-  128 (167)
Q Consensus        76 ------------------~v-------~~G~~a~l~C~~~~~~~~p-~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g-  128 (167)
                                        .+       +.|+.+.|.|.+.+.  .| .+.++|+||+ ..+....    ..+.....+| 
T Consensus       341 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~l~C~~~g~--~p~~~~v~W~k~g-~~l~~~~----~~~~~~~~~g~  413 (457)
T 1hzh_H          341 PIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGF--YPSDIAVEWESNG-QPENNYK----TTPPVLDSDGS  413 (457)
T ss_dssp             CEEEEECCCCCCCBCCEEEEECCCGGGGGSSEEEEEEEEEEE--BSSCCEEEEEETT-EECCCEE----ECCCEECTTSC
T ss_pred             cceEEEEcccCCCCCCeEEEECCCccccCCCcEEEEEEEEeE--ECCCCEEEEEECC-EECccee----ecCceeCCCCC
Confidence                              01       124559999999753  13 2389999997 5553211    1112223344 


Q ss_pred             -----eEEEeecCcCCCCcceEEEeeecC
Q psy12724        129 -----ELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       129 -----~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                           .|.|.....+|+ |.|+|.|.|..
T Consensus       414 ~~~~s~l~i~~~~~~~~-g~YtC~a~n~~  441 (457)
T 1hzh_H          414 FFLYSKLTVDKSRWQQG-NVFSCSVMHEA  441 (457)
T ss_dssp             EEEEEEEEEEHHHHHTT-CCEEEEEECTT
T ss_pred             EEEEEEEEEChHHccCC-CeEEEEEEECC
Confidence                 466777777898 99999999976

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.27  E-value=3.9e-11  Score=91.10  Aligned_cols=131  Identities=14%  Similarity=0.245  Sum_probs=85.6

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cce---eee---c----------CCc------------eE--
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQ---YQI---D----------NQD------------FV--   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~---~~~---~----------~~~------------~v--   63 (167)
                      .++..+.+.+|+++.|.|.+.+.+.. .+.+.|+|.+ +..   +..   +          ..|            .+  
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   83 (223)
T 1dee_B            5 VESGGGVVQPGKSLRLSCAASGFTFS-GYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQM   83 (223)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred             EcCCCEEEcCCCcEEEEEEecCcccC-CceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEE
Confidence            45678899999999999999876521 2469999854 211   100   0          011            11  


Q ss_pred             ------EEeeeEEEecCe----------------EE-------------------EeCCcEEEEeeeCCccCCcce-eEE
Q psy12724         64 ------VSQSYTVNIMDE----------------HV-------------------LKGNSAVLKCHIPSFVADYVA-VES  101 (167)
Q Consensus        64 ------~~g~y~c~~~~~----------------~v-------------------~~G~~a~l~C~~~~~~~~p~p-~i~  101 (167)
                            .+|.|.|.+.+.                .|                   .+|+.+.|.|.+.+.  .|.| .++
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~--~P~p~~v~  161 (223)
T 1dee_B           84 NSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDF--LPDSITFS  161 (223)
T ss_dssp             CSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEE--BSSCCEEE
T ss_pred             CCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEE--eCCCeEEE
Confidence                  169999987431                01                   257889999999753  2666 899


Q ss_pred             EEe-CCCeeeEEe--e-eecCCceEEEccCCeEEEeecCc--CCCCcceEEEeeecC
Q psy12724        102 WIS-DQGEELFVD--M-TESTDGKYLVLPSGELHIRDVGP--EDGYKSYQCRTKHRL  152 (167)
Q Consensus       102 W~k-~~~~~l~~~--~-~~~~~~r~~~~~~g~L~I~~v~~--~D~~G~Y~C~a~n~~  152 (167)
                      |+| |+ ..+...  . ....+++|.+  ...|.|.....  +|. |.|+|.|.|..
T Consensus       162 W~~~~g-~~l~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~~~d~-g~y~C~v~n~~  214 (223)
T 1dee_B          162 WKYKNN-SDISSTRGFPSVLRGGKYAA--TSQVLLPSKDVAQGTN-EHVVCKVQHPN  214 (223)
T ss_dssp             EEETTS-CBCSCEEECCCEEETTEEEE--EEEEEEECTTTTSTTC-CEEEEEEECTT
T ss_pred             eEccCC-CccceeEECCccccCCeEEE--EEEEEEcHHHhccCCC-CEEEEEEEeCC
Confidence            999 66 454210  0 0001355554  35699998887  888 99999999987

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.27  E-value=1.4e-12  Score=100.99  Aligned_cols=121  Identities=12%  Similarity=0.212  Sum_probs=76.8

Q ss_pred             EEeCCcEEEEeecCCC---CCCcceeeEEeeCCCceeee--------cCCce-----E--------EEeeeEEEecCe--
Q psy12724         22 VIKGNAAVFKCNLPSF---VSDHLDVVSWADTDGGQYQI--------DNQDF-----V--------VSQSYTVNIMDE--   75 (167)
Q Consensus        22 v~~G~~~~l~C~a~~~---~~~~~~~i~W~k~~~~~~~~--------~~~~~-----v--------~~g~y~c~~~~~--   75 (167)
                      +.+|+++.|.|.+.+.   |.+  ..|+|+|+++.....        ++.++     +        ..|.|.|.+.+.  
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~--~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~  106 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPE--VRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAF  106 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCC--CEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSS
T ss_pred             cccCCcEEEEEEEecCccCCCC--CEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccC
Confidence            6799999999999876   432  169999997542210        11111     1        169999987431  


Q ss_pred             --------------------EE-------EeCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEeeeecCCceEEEccC
Q psy12724         76 --------------------HV-------LKGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVDMTESTDGKYLVLPS  127 (167)
Q Consensus        76 --------------------~v-------~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~  127 (167)
                                          .+       +.|+.+.|.|.+.+.  .|. ..++|+||+ ..+...    ...++....+
T Consensus       107 ~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~--~P~~~~v~W~k~g-~~l~~~----~~~~~~~~~d  179 (239)
T 1i1c_A          107 PAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGF--YPPDIYTEWKMNG-QPQENY----KNTPPTMDTD  179 (239)
T ss_dssp             SSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEE--BSSCCEEEEEETT-EECSSE----EECCCEECTT
T ss_pred             CCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeee--ECCCeEEEEEECC-EECCCc----eecCceECCC
Confidence                                01       137889999999763  244 478999997 454211    0112223345


Q ss_pred             Ce------EEEeecCcCCCCcceEEEeeecC
Q psy12724        128 GE------LHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       128 g~------L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |.      |.|......|. |.|+|.|.|..
T Consensus       180 gt~~~~s~l~v~~~~~~~~-g~YtC~v~n~~  209 (239)
T 1i1c_A          180 GSYFLYSKLNVKKETWQQG-NTFTCSVLHEG  209 (239)
T ss_dssp             SCEEEEEEEEEEHHHHHTT-CCEEEEEECTT
T ss_pred             CCEEEEEEEEEChhhcCCC-CEEEEEEECCC
Confidence            54      44555555678 99999999987

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.27  E-value=1.1e-11  Score=103.38  Aligned_cols=88  Identities=25%  Similarity=0.419  Sum_probs=66.1

Q ss_pred             EeeeEEEe-------cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCc
Q psy12724         65 SQSYTVNI-------MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGP  137 (167)
Q Consensus        65 ~g~y~c~~-------~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~  137 (167)
                      ...|.|.+       .+..+.+|++++|.|.+.    .|.|.++|+++++..+...   ...+|+.+..+|.|.|++++.
T Consensus       334 ~~~~~C~~P~i~~~~~~~~v~~G~~v~L~C~~~----~p~p~i~W~~~~~~~~~~~---~~~~~~~~~~~~~L~I~~v~~  406 (440)
T 3zyj_A          334 QNYFTCYAPVIVEPPADLNVTEGMAAELKCRAS----TSLTSVSWITPNGTVMTHG---AYKVRIAVLSDGTLNFTNVTV  406 (440)
T ss_dssp             -CCSCCCCCCEEECCCCEEECTTSCCEECCEES----STTSEEEEECTTSCEEESS---SCCSSEEECTTCCEEESSCCS
T ss_pred             hhhccCCCCcccccccceeeccCceEEEEeecC----CCCCceEEEeCCCceeecc---CCCceEEEccCCeEEEccCCh
Confidence            45566643       346788999999999993    3888999999765443211   134688888999999999999


Q ss_pred             CCCCcceEEEeeecC---cceEEEee
Q psy12724        138 EDGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       138 ~D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                      +|+ |.|+|.|.|..   +..+.+.+
T Consensus       407 ~D~-G~Y~C~a~N~~G~~~~~~~~~v  431 (440)
T 3zyj_A          407 QDT-GMYTCMVSNSVGNTTASATLNV  431 (440)
T ss_dssp             TTC-EEEEEEEECSSCEEEEEEEEEE
T ss_pred             hhC-EEEEEEEEcCCCcEEEEEEEEE
Confidence            999 99999999987   33444444

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.27  E-value=1e-11  Score=102.01  Aligned_cols=126  Identities=15%  Similarity=0.203  Sum_probs=80.5

Q ss_pred             EEeCCcEEEEeecCCC-CCCcceeeEEeeCCCceeee--------cCCc-----eE--------EEeeeEEEecCe----
Q psy12724         22 VIKGNAAVFKCNLPSF-VSDHLDVVSWADTDGGQYQI--------DNQD-----FV--------VSQSYTVNIMDE----   75 (167)
Q Consensus        22 v~~G~~~~l~C~a~~~-~~~~~~~i~W~k~~~~~~~~--------~~~~-----~v--------~~g~y~c~~~~~----   75 (167)
                      +..|+++.|.|.+.+. |.+....|+|+|++++....        .+..     .+        ..|.|.|.+.+.    
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  259 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  259 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence            7899999999999987 22212369999997543211        0111     11        258899987321    


Q ss_pred             ------------------E-------EEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee----eecCCceEEEcc
Q psy12724         76 ------------------H-------VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM----TESTDGKYLVLP  126 (167)
Q Consensus        76 ------------------~-------v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~----~~~~~~r~~~~~  126 (167)
                                        .       +..|+.+.|.|.+.++ -.|.+.|+|+||+ ..+....    ....++.|.+. 
T Consensus       260 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~-~P~~i~v~W~k~g-~~~~~~~~~~~~~~~dgty~~~-  336 (376)
T 2aty_A          260 PIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDF-FPEDITVEWQWNG-QPAENYKNTQPIMNTNESYFVY-  336 (376)
T ss_pred             ceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEe-ECCCcEEEEEECC-EECCCeEeCCceECCCCCEEEE-
Confidence                              0       1248899999999864 1134688999997 4442110    00122233322 


Q ss_pred             CCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        127 SGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       127 ~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                       ..|.|.....+|. |.|+|.|.|..
T Consensus       337 -s~L~i~~~~~~~~-~~YtC~v~h~~  360 (376)
T 2aty_A          337 -SKLNVQKSNWEAG-NTFTCSVLHEG  360 (376)
T ss_pred             -EEEEEcHHHhCCC-CcEEEEEEeCC
Confidence             2488888888888 99999999986

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=99.26  E-value=1.9e-11  Score=83.82  Aligned_cols=86  Identities=20%  Similarity=0.378  Sum_probs=58.1

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-eee--EEeee--ecCCceEEEccCC------eEEEeecCcCCC
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-EEL--FVDMT--ESTDGKYLVLPSG------ELHIRDVGPEDG  140 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~~l--~~~~~--~~~~~r~~~~~~g------~L~I~~v~~~D~  140 (167)
                      +.+..+.+|++|+|+|.+.+.   + +.+.|+|+.. ..+  .-...  +...+|+.+..++      .|.|++++.+|+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~---~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~Ds   83 (113)
T 1h5b_A            8 PSALSLHEGTDSALRCNFTTT---M-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDS   83 (113)
T ss_dssp             CSEEEEETTCCEEEEEEESSC---C-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGC
T ss_pred             CCEEEEecCCcEEEEEEECCC---C-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChhhC
Confidence            345678899999999999742   3 5799998641 111  10000  0124677765544      799999999999


Q ss_pred             CcceEEEeeecC-------cceEEEeeeC
Q psy12724        141 YKSYQCRTKHRL-------TGETRLSATK  162 (167)
Q Consensus       141 ~G~Y~C~a~n~~-------~~~~~l~~~~  162 (167)
                       |.|.|.+.|..       ..-++|.+.+
T Consensus        84 -G~Y~C~~~n~~~~~~~~fg~gT~L~V~~  111 (113)
T 1h5b_A           84 -GTYFCAAEASSGSWQLIFGSGTQLTVMP  111 (113)
T ss_dssp             -EEEEEEEECSSSSSSCEECCCEEEEEEC
T ss_pred             -EEEEEEEecCCCCcEEEECCCcEEEEEE
Confidence             99999999864       2345555544

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.26  E-value=3e-11  Score=91.86  Aligned_cols=132  Identities=15%  Similarity=0.195  Sum_probs=83.3

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCc-ceeeEEeeCC-Cce---e-eec-----------CCc------------eE--
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDH-LDVVSWADTD-GGQ---Y-QID-----------NQD------------FV--   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~-~~~i~W~k~~-~~~---~-~~~-----------~~~------------~v--   63 (167)
                      .+|+++.+.+|+++.|.|.+.+.+... .+.+.|+|++ +..   + ..+           ..|            .+  
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   84 (228)
T 3bae_H            5 KESGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKI   84 (228)
T ss_dssp             EEECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEE
T ss_pred             eCCCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEE
Confidence            457788999999999999998765310 1479998853 211   1 000           001            11  


Q ss_pred             ------EEeeeEEEecCe--------------------------------------EEEeCCcEEEEeeeCCccCCcce-
Q psy12724         64 ------VSQSYTVNIMDE--------------------------------------HVLKGNSAVLKCHIPSFVADYVA-   98 (167)
Q Consensus        64 ------~~g~y~c~~~~~--------------------------------------~v~~G~~a~l~C~~~~~~~~p~p-   98 (167)
                            .+|.|.|.+.+.                                      .+.+|+++.|.|.+.+.  .|.| 
T Consensus        85 ~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~--~P~p~  162 (228)
T 3bae_H           85 TSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGY--FPEPV  162 (228)
T ss_dssp             CSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEE--BSSCC
T ss_pred             cCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccE--eCCCE
Confidence                  168999976321                                      01358899999999753  3667 


Q ss_pred             eEEEEeCCCeeeE-Eeee-ecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCc
Q psy12724         99 VESWISDQGEELF-VDMT-ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT  153 (167)
Q Consensus        99 ~i~W~k~~~~~l~-~~~~-~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~  153 (167)
                      .++|+|++. .+. .... ....+.|.+  .+.|.|.++.. |. |.|+|.|.|...
T Consensus       163 ~v~W~~~~~-~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~-d~-g~YtC~~~n~~~  214 (228)
T 3bae_H          163 TLTWNSGSL-SSGVHTFPAVLQSDLYTL--SSSVTVTSSTW-PS-ESITCNVAHPAS  214 (228)
T ss_dssp             EEEEGGGTC-CTTEEEEEEEEETTEEEE--EEEEEEETTTT-TT-SCCEEEEEEGGG
T ss_pred             EEEEeeCCc-ccCceEcCceeCCCcEEE--EEEEEEEhhhc-CC-CcEEEEEEECCC
Confidence            899999873 321 0000 001134433  35699999888 76 999999999873

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.25  E-value=1.3e-11  Score=93.47  Aligned_cols=85  Identities=15%  Similarity=0.067  Sum_probs=56.7

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee----------e-ecCCceEEEcc---CCeEEEeecCcCC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM----------T-ESTDGKYLVLP---SGELHIRDVGPED  139 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~----------~-~~~~~r~~~~~---~g~L~I~~v~~~D  139 (167)
                      +.++.+|++|+|+|......+.|.|.|+|+|++. .+....          . ....+++.+..   +..|.|.+++.+|
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   80 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGP-GEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH   80 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEET-TTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCC-CcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHH
Confidence            4678999999999975433366999999999862 211100          0 00122333322   2369999999999


Q ss_pred             CCcceEEEeeecC---cceEEEee
Q psy12724        140 GYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       140 ~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                      + |.|+|.|.|..   +..+.|.+
T Consensus        81 ~-G~Y~C~a~n~~g~~~~~~~l~V  103 (203)
T 4fa8_A           81 D-GNYLCRMKLGETEVTKQEHLSV  103 (203)
T ss_dssp             C-EEEEEEEEETTEEEEEEEEEEE
T ss_pred             C-eEEEEEEEcCCCcEEEEEEEEe
Confidence            9 99999999976   33444544

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.25  E-value=1.1e-12  Score=108.54  Aligned_cols=125  Identities=17%  Similarity=0.268  Sum_probs=79.9

Q ss_pred             EEeCCcEEEEeecCCCCC-CcceeeEEeeCCCceeee---------cCC----ceE--------EEeeeEEEecCe----
Q psy12724         22 VIKGNAAVFKCNLPSFVS-DHLDVVSWADTDGGQYQI---------DNQ----DFV--------VSQSYTVNIMDE----   75 (167)
Q Consensus        22 v~~G~~~~l~C~a~~~~~-~~~~~i~W~k~~~~~~~~---------~~~----~~v--------~~g~y~c~~~~~----   75 (167)
                      +.+|+++.|.|.+.+.++ +..+.|+|+|++......         ++.    ..+        ..|.|+|.+.+.    
T Consensus       242 v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  321 (434)
T 1igy_B          242 LLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPA  321 (434)
T ss_dssp             HSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSS
T ss_pred             cccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCC
Confidence            788999999999998742 112479999987543211         110    011        269999987430    


Q ss_pred             ------------------E-------EEeCCcEEEEeeeCCccCCc-ceeEEEEeCCCeeeEEeee----ecCCceEEEc
Q psy12724         76 ------------------H-------VLKGNSAVLKCHIPSFVADY-VAVESWISDQGEELFVDMT----ESTDGKYLVL  125 (167)
Q Consensus        76 ------------------~-------v~~G~~a~l~C~~~~~~~~p-~p~i~W~k~~~~~l~~~~~----~~~~~r~~~~  125 (167)
                                        .       ...|+.+.|.|.+.+.  .| .+.++|+||+ ..+.....    ...++.|.+.
T Consensus       322 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~--~P~~~~v~W~k~g-~~l~~~~~~~~~~~~~g~~~~~  398 (434)
T 1igy_B          322 PIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDF--FPEDITVEWQSDG-QAPENYKNTQPIMDTDGSYFVY  398 (434)
T ss_dssp             CCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEE--BCSCEEEEEEETT-SCCSCCEECCCCCCSSSCEEEE
T ss_pred             ceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEee--ECCCeEEEEEECC-EecCCceeccceeCCCCcEEEE
Confidence                              1       1257789999999753  24 3489999997 45421100    0112222221


Q ss_pred             cCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        126 PSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       126 ~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                        ..|.|.....+|+ |.|+|.|.|..
T Consensus       399 --s~l~i~~~~~~~~-g~YtC~a~n~~  422 (434)
T 1igy_B          399 --SKLNVQKSNWEAG-NTFTCSVLHEG  422 (434)
T ss_dssp             --EEEEEEHHHHHTT-CCEEEEEEETT
T ss_pred             --EEEEECchhccCC-CEEEEEEEcCC
Confidence              2477888888898 99999999986

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.25  E-value=1.1e-12  Score=90.95  Aligned_cols=72  Identities=25%  Similarity=0.448  Sum_probs=56.1

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCccee-EEEEeCCCeeeEEeeeecCCceEEEc----cC---CeEEEeecCcCCCC-c
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAV-ESWISDQGEELFVDMTESTDGKYLVL----PS---GELHIRDVGPEDGY-K  142 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~-i~W~k~~~~~l~~~~~~~~~~r~~~~----~~---g~L~I~~v~~~D~~-G  142 (167)
                      ..+..+.+|+++.|.|.+.+   .|.|. ++|+|++ ..+...    ..+||.+.    .+   ..|.|.+++.+| . |
T Consensus        20 ~~~~~~~~G~~v~l~C~~~g---~P~p~~i~W~~~~-~~l~~~----~~~~~~~~~~~~~~~~~~~L~I~~v~~~D-~~G   90 (122)
T 2cry_A           20 TQTQHALHGEKGQIKCFIRS---TPPPDRIAWSWKE-NVLESG----TSGRYTVETISTEEGVISTLTISNIVRAD-FQT   90 (122)
T ss_dssp             ECCCCCCTTSCCCCCEEECC---SSCCSEEEEESSS-CEECSE----EETTEEEEEEEETTEEEEEEECTTCCHHH-HHS
T ss_pred             CCeEEEecCCCEEEEEEEee---cCCCcEeEEEECC-EEccCC----CCCCEEEEEecCCCceEEEEEEcCCChhh-CCc
Confidence            45667889999999999984   58887 9999997 455321    13566552    22   279999999999 5 9


Q ss_pred             ceEEEeeecC
Q psy12724        143 SYQCRTKHRL  152 (167)
Q Consensus       143 ~Y~C~a~n~~  152 (167)
                      .|+|.|.|.+
T Consensus        91 ~Y~C~a~N~~  100 (122)
T 2cry_A           91 IYNCTAWNSF  100 (122)
T ss_dssp             CEEEEEECSS
T ss_pred             eEEEEEECCC
Confidence            9999999998

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.25  E-value=3.4e-11  Score=81.81  Aligned_cols=76  Identities=16%  Similarity=0.294  Sum_probs=54.0

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-ee---eEEe---eeecCCceEEEccC---CeEEEeecCcCCCCc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-EE---LFVD---MTESTDGKYLVLPS---GELHIRDVGPEDGYK  142 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~~---l~~~---~~~~~~~r~~~~~~---g~L~I~~v~~~D~~G  142 (167)
                      .+..+.+|++|.|+|.+.+   .|.|.+.|+|++. ..   +...   ..+...+|+.+..+   ..|.|++++.+|+ |
T Consensus         9 ~~~~~~~G~~v~L~C~~~~---~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds-G   84 (108)
T 1jhl_L            9 SYLVASPGETITINCRASK---SISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDF-A   84 (108)
T ss_dssp             SEEEECTTSCEEEEEEESS---CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCC-S
T ss_pred             CeeEEcCCCCEEEEeEECC---CCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHHHC-E
Confidence            4567889999999999984   4678899998641 11   1110   00012357766532   3799999999999 9


Q ss_pred             ceEEEeeecC
Q psy12724        143 SYQCRTKHRL  152 (167)
Q Consensus       143 ~Y~C~a~n~~  152 (167)
                      .|.|.|.|..
T Consensus        85 ~Y~C~~~n~~   94 (108)
T 1jhl_L           85 MYICQQHNEY   94 (108)
T ss_dssp             EEEEEECSSS
T ss_pred             EEEEEEccCC
Confidence            9999999974

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.24  E-value=3.5e-12  Score=105.67  Aligned_cols=121  Identities=12%  Similarity=0.256  Sum_probs=77.6

Q ss_pred             EEeCCcEEEEeecCCCC--CCcceeeEEeeCCCceeee----------cCC-c---eE--------EEeeeEEEecCe--
Q psy12724         22 VIKGNAAVFKCNLPSFV--SDHLDVVSWADTDGGQYQI----------DNQ-D---FV--------VSQSYTVNIMDE--   75 (167)
Q Consensus        22 v~~G~~~~l~C~a~~~~--~~~~~~i~W~k~~~~~~~~----------~~~-~---~v--------~~g~y~c~~~~~--   75 (167)
                      +.+|+++.|.|.+.+.+  .+ .+.|+|+|++.. +..          ++. .   .+        ..|.|+|.+.+.  
T Consensus       252 ~~~G~~~~L~C~~~g~~~~p~-~~~v~W~k~~~~-~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~  329 (444)
T 1igt_B          252 LMISLSPIVTCVVVDVSEDDP-DVQISWFVNNVE-VHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDL  329 (444)
T ss_dssp             HCTTSCCEEEEEEEEECTTCC-CCEEEEEETTEE-CSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTC
T ss_pred             eecCCCcEEEEEEeecccCCC-CeEEEEEECCcc-ccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCC
Confidence            47899999999999874  21 247999998642 221          110 0   11        169999987431  


Q ss_pred             ------E--------------E-------EeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeeeecCCceEEEccC
Q psy12724         76 ------H--------------V-------LKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMTESTDGKYLVLPS  127 (167)
Q Consensus        76 ------~--------------v-------~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~~~~~~r~~~~~~  127 (167)
                            .              +       +.++.+.|.|.+.+.  .|.| .++|+||+ ..+....    ..+.....+
T Consensus       330 ~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~--~P~~~~v~W~k~g-~~l~~~~----~~~~~~~~~  402 (444)
T 1igt_B          330 PAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDF--MPEDIYVEWTNNG-KTELNYK----NTEPVLDSD  402 (444)
T ss_dssp             SSCEEEEEECCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEE--BSSCCEEEEEETT-EECSSEE----ECCCEECTT
T ss_pred             CCceEEEEeccCCCCCCCEEEEeCCChHHccCCeEEEEEEEEee--eCCCCEEEEEECC-EEccccc----cccceeCCC
Confidence                  0              1       134469999999753  3555 89999997 4542110    111222334


Q ss_pred             C------eEEEeecCcCCCCcceEEEeeecC
Q psy12724        128 G------ELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       128 g------~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |      .|.|.....+|+ |.|+|.|.|..
T Consensus       403 g~~~~~s~l~i~~~~~~d~-g~YtC~a~n~~  432 (444)
T 1igt_B          403 GSYFMYSKLRVEKKNWVER-NSYSCSVVHEG  432 (444)
T ss_dssp             SCEEEEEEEEEEHHHHHTC-CCEEEEEECTT
T ss_pred             CCEEEEEEEEEChHHhcCC-CeEEEEEECCC
Confidence            4      466777777888 99999999986

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.24  E-value=4e-11  Score=90.10  Aligned_cols=79  Identities=18%  Similarity=0.244  Sum_probs=55.9

Q ss_pred             EEecCeEEE-eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc-cCCeEEEeecCcCCCCcceEEE
Q psy12724         70 VNIMDEHVL-KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL-PSGELHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        70 c~~~~~~v~-~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~-~~g~L~I~~v~~~D~~G~Y~C~  147 (167)
                      ..+.+..+. +|+++.|.|.+.|   .|.|.++|+|+.+..+        .++.... .++.|.|.+++.+|+ |.|+|.
T Consensus         5 i~p~~~~~~~~G~~v~L~C~~~g---~P~p~i~W~~~~~~~~--------~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~   72 (202)
T 1vca_A            5 TTPESRYLAQIGDSVSLTCSTTG---CESPFFSWRTQIDSPL--------NGKVTNEGTTSTLTMNPVSFGNE-HSYLCT   72 (202)
T ss_dssp             EESSSEEEEETTSCEEEEEEEES---CSSCEEEEEETTCCCC--------SSEEEEETTEEEEEESSCCGGGC-SEEEEE
T ss_pred             ECCCCcEEEcCCCcEEEEEeecC---CCCCeEEEECCCCCCc--------cceEEEcCCccEEEECcCCHHHC-EEEEEE
Confidence            344555555 8999999999974   5889999999542222        1222222 345799999999999 999999


Q ss_pred             eeecC---cceEEEee
Q psy12724        148 TKHRL---TGETRLSA  160 (167)
Q Consensus       148 a~n~~---~~~~~l~~  160 (167)
                      |.|..   +..+.|.+
T Consensus        73 a~n~~~~~~~~~~l~V   88 (202)
T 1vca_A           73 ATCESRKLEKGIQVEI   88 (202)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEECCceEeeEEEEEE
Confidence            99986   33445554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.24  E-value=4.4e-12  Score=106.15  Aligned_cols=87  Identities=24%  Similarity=0.378  Sum_probs=66.2

Q ss_pred             EeeeEEEe-------cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCc
Q psy12724         65 SQSYTVNI-------MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGP  137 (167)
Q Consensus        65 ~g~y~c~~-------~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~  137 (167)
                      .+.|.|.+       .+..+.+|++++|.|.+.     |.|.++|+++++..+...   ...+|+.+..+|.|.|++++.
T Consensus       345 ~~~~~C~~P~i~~~~~~~~v~~G~~~~l~C~~~-----p~p~i~W~~~~~~~~~~~---~~~~~~~~~~~g~L~i~~v~~  416 (452)
T 3zyi_A          345 QASFQCSAPFIMDAPRDLNISEGRMAELKCRTP-----PMSSVKWLLPNGTVLSHA---SRHPRISVLNDGTLNFSHVLL  416 (452)
T ss_dssp             GGGCCCCCCCCSBCCCCEECCTTSCCEECCBCC-----TTSEEEEECTTSCEECSS---CCCSSCEECTTSCEECSSCCT
T ss_pred             hhhhcccCcccccccccccccCCCEEEEEEeCC-----CCCcEEEEeCCCcEeccC---CCCCCEEECCCCeEEEeecCH
Confidence            45677753       346788999999999985     888999999765443211   134578888899999999999


Q ss_pred             CCCCcceEEEeeecC---cceEEEee
Q psy12724        138 EDGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       138 ~D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                      +|+ |.|+|.|.|..   +..+.|.+
T Consensus       417 ~D~-G~Y~C~a~N~~G~~~~~~~l~v  441 (452)
T 3zyi_A          417 SDT-GVYTCMVTNVAGNSNASAYLNV  441 (452)
T ss_dssp             TCC-EEEEEEEECSSCEEEEEEEEEC
T ss_pred             HHC-EEEEEEEEcCCCcEEEEEEEEE
Confidence            999 99999999987   33444544

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.24  E-value=3.5e-11  Score=89.72  Aligned_cols=75  Identities=15%  Similarity=0.199  Sum_probs=57.1

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEe--CCCeeeEEeee----ecCCceEEEccCCeEEEeecCcCCCCcceEEEe
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWIS--DQGEELFVDMT----ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k--~~~~~l~~~~~----~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      ..+.+|++|.|+|..... +.|.|.|.|+|  ++ ..|.....    -..++|+.++++|.|.|++++.+|+ |.|+|.|
T Consensus         9 v~g~~G~sv~L~~~~~~~-~~~~~~i~W~k~~~~-~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~Ds-G~Y~c~~   85 (182)
T 1hnf_A            9 TWGALGQDINLDIPSFQM-SDDIDDIKWEKTSDK-KKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQ-DIYKVSI   85 (182)
T ss_dssp             EEEETTSCEEECCTTCCC-CSSEEEEEEEEGGGC-CEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGC-EEEEEEE
T ss_pred             EEEecCCCEEEeCCcccc-cCcCCEEEEEECCCC-cEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhC-EEEEEEE
Confidence            456789999999954321 34788999999  76 45421100    0136789999999999999999999 9999999


Q ss_pred             eecC
Q psy12724        149 KHRL  152 (167)
Q Consensus       149 ~n~~  152 (167)
                      .|..
T Consensus        86 ~n~~   89 (182)
T 1hnf_A           86 YDTK   89 (182)
T ss_dssp             EETT
T ss_pred             EeCC
Confidence            9975

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.24  E-value=1.6e-11  Score=92.11  Aligned_cols=73  Identities=21%  Similarity=0.288  Sum_probs=57.4

Q ss_pred             EecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcceEEE
Q psy12724         71 NIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        71 ~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~C~  147 (167)
                      .+.+..+.+|+++.|.|.+.   |+|.|.++|+|++ ..+..    ....++.+..   ++.|.|.+++.+|+ |.|+|.
T Consensus        24 ~p~~~~~~~G~~v~l~C~~~---g~p~p~i~W~~~g-~~l~~----~~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~   94 (215)
T 3mtr_A           24 GPVAVYTWEGNQVNITCEVF---AYPSATISWFRDG-QLLPS----SNYSNIKIYNTPSASYLEVTPDSENDF-GNYNCT   94 (215)
T ss_dssp             CCSEEEECTTCCEEEEEEEE---EESCCEEEEEETT-EESSC----SSSCSEEEEEETTEEEEEECCCSGGGC-EEEEEE
T ss_pred             CCceEEEECCCCEEEEEEEe---ecCCCEEEEEECC-eECCC----CCCccEEEecCCCeeEEEEecCChhhC-eEEEEE
Confidence            34456788999999999998   4588999999997 55532    1224555543   45899999999998 999999


Q ss_pred             eeecC
Q psy12724        148 TKHRL  152 (167)
Q Consensus       148 a~n~~  152 (167)
                      |.|..
T Consensus        95 a~n~~   99 (215)
T 3mtr_A           95 AVNRI   99 (215)
T ss_dssp             EECSS
T ss_pred             EEECC
Confidence            99987

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.24  E-value=3.6e-12  Score=106.12  Aligned_cols=122  Identities=18%  Similarity=0.318  Sum_probs=77.2

Q ss_pred             EEEeCCcEEEEeecCCC-CCCcceeeEEeeCCCce----ee---ecCCce-----E-E------EeeeEEEecC------
Q psy12724         21 FVIKGNAAVFKCNLPSF-VSDHLDVVSWADTDGGQ----YQ---IDNQDF-----V-V------SQSYTVNIMD------   74 (167)
Q Consensus        21 ~v~~G~~~~l~C~a~~~-~~~~~~~i~W~k~~~~~----~~---~~~~~~-----v-~------~g~y~c~~~~------   74 (167)
                      .+.+|+++.|.|.+.+. |.+  +.|.|+|++...    ..   ..+.++     + +      .|.|+|.+.+      
T Consensus       143 ~~~~g~~v~L~C~~~g~~P~~--~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~dG~Y~C~a~n~~~~~~  220 (457)
T 1hzh_H          143 KSTSGGTAALGCLVKDYFPEP--VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTK  220 (457)
T ss_dssp             CCCTTCCEEEEEEEESBBSCC--CEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGTSCCEEEEEEGGGTEE
T ss_pred             cccCCCcEEEEEEEeEEeCCC--eEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCCceEEEEEEeCCCCcc
Confidence            35789999999999987 332  479999986321    10   011111     1 1      2899998632      


Q ss_pred             ---------------------------eEE-----------EeCCcEEEEeeeCCccCCcce---eEEEEeCCCeeeEEe
Q psy12724         75 ---------------------------EHV-----------LKGNSAVLKCHIPSFVADYVA---VESWISDQGEELFVD  113 (167)
Q Consensus        75 ---------------------------~~v-----------~~G~~a~l~C~~~~~~~~p~p---~i~W~k~~~~~l~~~  113 (167)
                                                 ..+           .+|+++.|.|.+.+.  .|.|   .++|+|++ ..+...
T Consensus       221 ~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~--~p~p~~~~i~W~k~~-~~~~~~  297 (457)
T 1hzh_H          221 VDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDV--SHEDPEVKFNWYVDG-VEVHNA  297 (457)
T ss_dssp             EEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECC--CTTCCCCEEEEEETT-EEECCC
T ss_pred             eeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcc--cCCCCceEEEEEeCC-cccccc
Confidence                                       011           239999999999753  2333   89999998 454211


Q ss_pred             eeecCCceEEEccCCeEEEeec---CcCC---CCcceEEEeeecC
Q psy12724        114 MTESTDGKYLVLPSGELHIRDV---GPED---GYKSYQCRTKHRL  152 (167)
Q Consensus       114 ~~~~~~~r~~~~~~g~L~I~~v---~~~D---~~G~Y~C~a~n~~  152 (167)
                          .........+|.|.|.++   ..+|   + |.|+|.|.|..
T Consensus       298 ----~~~~~~~~~~g~~~~~~~l~i~~~d~~d~-G~Y~C~a~n~~  337 (457)
T 1hzh_H          298 ----KTKPREEQYNSTYRVVSVLTVLHQDWLNG-KEYKCKVSNKA  337 (457)
T ss_dssp             ----EEEEEEECTTSCEEEEEEECCCHHHHHHT-CCEEEEEECTT
T ss_pred             ----ccccceecCCCcEEEEEEEEECHHHccCC-CcEEEEEeCCC
Confidence                112233445677776643   3555   9 99999999865

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.23  E-value=4.9e-11  Score=92.74  Aligned_cols=113  Identities=16%  Similarity=0.181  Sum_probs=74.0

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceee---e-cCC---ceE--------EEeeeEEEecC----
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ---I-DNQ---DFV--------VSQSYTVNIMD----   74 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~---~-~~~---~~v--------~~g~y~c~~~~----   74 (167)
                      .....+..|.+|+++.|.|.+.+.       ++|.|++.....   . ...   ..+        ..|.|+|.+.+    
T Consensus         4 ~~~~~~~~v~~G~~v~L~C~~~~~-------v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~   76 (289)
T 3mjg_X            4 TPPGPELVLNVSSTFVLTCSGSAP-------VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGL   76 (289)
T ss_dssp             CSSCSEEECCTTCCEEEEEEESSC-------CEEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC----
T ss_pred             cCCCCeEEEeCCCcEEEEEeccce-------EEEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCC
Confidence            344557888999999999999753       899998764211   1 111   011        27999998742    


Q ss_pred             ----------------------------eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeEEeeeecCCceEEEc
Q psy12724         75 ----------------------------EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELFVDMTESTDGKYLVL  125 (167)
Q Consensus        75 ----------------------------~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~~~~~~~~~~r~~~~  125 (167)
                                                  ..+.+|+++.|.|.+.    +|.|.++|++++ +..+.        ..+ -.
T Consensus        77 ~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~----~p~~~v~w~~~~~~~~~~--------~~~-~~  143 (289)
T 3mjg_X           77 ETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT----DPQLVVTLHEKKGDVALP--------VPY-DH  143 (289)
T ss_dssp             --CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS----CTTSCEEEEESSCCSCCC--------CCE-ET
T ss_pred             CcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC----CCCceEEEEeCCCCCccc--------eee-cC
Confidence                                        2255799999999996    367788998875 22221        111 11


Q ss_pred             cCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        126 PSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       126 ~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..|.+     ..+|+ |.|+|.|.|..
T Consensus       144 ~~~~~-----~~~d~-G~Y~C~a~n~~  164 (289)
T 3mjg_X          144 QRGFS-----GIFED-RSYICKTTIGD  164 (289)
T ss_dssp             TTEEE-----ECCCS-SEEEEEEEETT
T ss_pred             CcCee-----eeccC-cEEEEEEEeCC
Confidence            12222     36798 99999999765

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.23  E-value=2.8e-10  Score=87.04  Aligned_cols=132  Identities=14%  Similarity=0.161  Sum_probs=84.0

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cc---eee-ec-----------CCc------------eE---
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GG---QYQ-ID-----------NQD------------FV---   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~---~~~-~~-----------~~~------------~v---   63 (167)
                      .++..+.+.+|+++.|.|.+.+.+.. .+.+.|+|.+ +.   .+. .+           ..|            .+   
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   83 (232)
T 1dn0_B            5 QQWGAGLLKPSETLSLTCAVYGGSFS-DYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLS   83 (232)
T ss_dssp             EEECCCEECTTSCEEEEEEEESSCCS-SCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             ECCCCEEEeCCCcEEEEEEEccccCC-CceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEEC
Confidence            45777899999999999999876421 2469999853 21   110 00           011            11   


Q ss_pred             -----EEeeeEEEec--C-------e-------EE-------------------EeC-CcEEEEeeeCCccCCcce-eEE
Q psy12724         64 -----VSQSYTVNIM--D-------E-------HV-------------------LKG-NSAVLKCHIPSFVADYVA-VES  101 (167)
Q Consensus        64 -----~~g~y~c~~~--~-------~-------~v-------------------~~G-~~a~l~C~~~~~~~~p~p-~i~  101 (167)
                           .+|.|.|.+.  +       .       .|                   ..| +.+.|.|.+.+.  .|.| .++
T Consensus        84 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~--~P~p~~v~  161 (232)
T 1dn0_B           84 SVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDF--LPDSITFS  161 (232)
T ss_dssp             SCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEE--BSSCCEEE
T ss_pred             CCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEE--eCCCeEEE
Confidence                 1799999875  2       0       01                   157 899999999753  3666 899


Q ss_pred             EEe-CCCeeeEEee---eecCCceEEEccCCeEEEeecCc--CCCCcceEEEeeecCc
Q psy12724        102 WIS-DQGEELFVDM---TESTDGKYLVLPSGELHIRDVGP--EDGYKSYQCRTKHRLT  153 (167)
Q Consensus       102 W~k-~~~~~l~~~~---~~~~~~r~~~~~~g~L~I~~v~~--~D~~G~Y~C~a~n~~~  153 (167)
                      |+| |+ ..+....   ....++.|..  .+.|.|.+...  +|. |.|+|.|.|...
T Consensus       162 W~~~~g-~~l~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~~~d~-g~ytC~v~n~~~  215 (232)
T 1dn0_B          162 WKYKNN-SDISSTRGFPSVLRGGKYAA--TSQVLLPSKDVMAGTD-EHVVCKVQHPNG  215 (232)
T ss_dssp             EEETTS-CEECCEEECCCEEETTEEEE--EEEEEECTTCC---CC-CEEEEEEECTTC
T ss_pred             EEcCCC-CceeeEEECCccccCCcEEE--EEEEEEcHHHhcccCC-CeEEEEEEeCCC
Confidence            999 76 4542100   0001245544  35799999987  898 999999999873

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.23  E-value=6.7e-11  Score=91.53  Aligned_cols=130  Identities=12%  Similarity=0.191  Sum_probs=83.3

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cce--ee--e--cC----------Cc------------eE--
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQ--YQ--I--DN----------QD------------FV--   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~--~~--~--~~----------~~------------~v--   63 (167)
                      .++..+.|.+|+++.|.|.+.+...+ .+.+.|+|.+ +..  +.  .  ++          .|            .+  
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   83 (253)
T 3liz_H            5 VESGGGLVQPGGSLKLSCAASGFTFS-SFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQM   83 (253)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEE
T ss_pred             EcCCCEEECCCCcEEEEEEeeCcccc-CceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEE
Confidence            45677899999999999999764322 2469998853 111  11  0  00          11            01  


Q ss_pred             ------EEeeeEEEecCe--------------E-------------------EEeCCcEEEEeeeCCccCCcce-eEEEE
Q psy12724         64 ------VSQSYTVNIMDE--------------H-------------------VLKGNSAVLKCHIPSFVADYVA-VESWI  103 (167)
Q Consensus        64 ------~~g~y~c~~~~~--------------~-------------------v~~G~~a~l~C~~~~~~~~p~p-~i~W~  103 (167)
                            .+|.|.|.+.+.              .                   +..|+.+.|.|.+.+.  .|.| .++|+
T Consensus        84 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~--~P~~~~v~W~  161 (253)
T 3liz_H           84 SSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGY--FPEPVTVTWN  161 (253)
T ss_dssp             CSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEE--BSSCCEEEEG
T ss_pred             CCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeE--eCCCeEEEEE
Confidence                  179999987431              0                   2368999999999863  3666 79999


Q ss_pred             eCCCeee-EEee-eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        104 SDQGEEL-FVDM-TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       104 k~~~~~l-~~~~-~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |++. .+ .... .....++|.+.  +.|.|.+.+.+|  |.|+|.|.|..
T Consensus       162 ~~~~-~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~~d--g~ytC~v~~~~  207 (253)
T 3liz_H          162 SGSL-SSGVHTFPAVLQSDLYTLS--SSVTVPSSTWPS--ETVTCNVAHPA  207 (253)
T ss_dssp             GGTB-CTTEEECCCEEETTEEEEE--EEEEEETTSTTT--SCCEEEEEEGG
T ss_pred             eCCe-ecceEeCCccccCCeEEEE--EEEEEcHHHCCC--ceEEEEEEECC
Confidence            9873 21 0000 00012566543  679999998877  99999999987

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=99.22  E-value=7.8e-11  Score=80.12  Aligned_cols=83  Identities=20%  Similarity=0.317  Sum_probs=58.4

Q ss_pred             eEEEeCCcEEEEeee-CCccCCcceeEEEEeCCCeeeEEee--------eecCCceEEEc-cCCeEEEeecCcCCCCcce
Q psy12724         75 EHVLKGNSAVLKCHI-PSFVADYVAVESWISDQGEELFVDM--------TESTDGKYLVL-PSGELHIRDVGPEDGYKSY  144 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~-~~~~~~p~p~i~W~k~~~~~l~~~~--------~~~~~~r~~~~-~~g~L~I~~v~~~D~~G~Y  144 (167)
                      ..+.+|++|+|+|.. .   +.+.+.+.|+|+.+..+....        .+.-.+|+.+. .++.|.|++++.+|+ |.|
T Consensus        13 v~~~~G~~v~L~C~~~~---~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~Ds-G~Y   88 (110)
T 2ptt_A           13 INAYTGSNVTLKIHKDP---LGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDK-GTY   88 (110)
T ss_dssp             EEEETTSCEEECSCSSC---CCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECTTTCCEEESSCCGGGC-EEE
T ss_pred             EEEecCCcEEEeCCccC---CCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeCCCccEEECCCCcccC-eEE
Confidence            578899999999998 4   346678999995443232110        00112577776 567899999999999 999


Q ss_pred             EEEeeecC--cceEEEeee
Q psy12724        145 QCRTKHRL--TGETRLSAT  161 (167)
Q Consensus       145 ~C~a~n~~--~~~~~l~~~  161 (167)
                      .|.+.+..  ...++|++.
T Consensus        89 ~C~v~~~~~~~~~~~L~V~  107 (110)
T 2ptt_A           89 YMRVLRETENELKITLEVF  107 (110)
T ss_dssp             EEEEESSSBCCEEEEEEEE
T ss_pred             EEEEEcCCCcEEEEEEEEE
Confidence            99998765  334555553

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.22  E-value=2.3e-10  Score=87.83  Aligned_cols=133  Identities=14%  Similarity=0.210  Sum_probs=84.3

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cce---ee-e------------cCCc------------e
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQ---YQ-I------------DNQD------------F   62 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~---~~-~------------~~~~------------~   62 (167)
                      .+...+..+.+.+|+++.|.|.+.+...+ .+.+.|+|.+ +..   +. .            ...|            .
T Consensus         3 ~v~q~p~~v~~~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   81 (242)
T 1hxm_B            3 HLEQPQISSTKTLSKTARLECVVSGITIS-ATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTST   81 (242)
T ss_dssp             EEECCCSEEEEETTCCEEEEEEEESSCTT-TSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEE
T ss_pred             ccCcCCceEEecCCCcEEEEEEeCCcccc-CceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEE
Confidence            45667888999999999999999875211 2479999853 211   11 0            0111            1


Q ss_pred             E--------EEeeeEEEecCe-----------------EEE-----------------------eCCcEEEEeeeCCccC
Q psy12724         63 V--------VSQSYTVNIMDE-----------------HVL-----------------------KGNSAVLKCHIPSFVA   94 (167)
Q Consensus        63 v--------~~g~y~c~~~~~-----------------~v~-----------------------~G~~a~l~C~~~~~~~   94 (167)
                      +        .+|.|.|.+.+.                 .|.                       +|+.+.|.|.+.+.  
T Consensus        82 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~--  159 (242)
T 1hxm_B           82 LTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKF--  159 (242)
T ss_dssp             EEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEE--
T ss_pred             EEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeE--
Confidence            1        169999987431                 111                       28889999999753  


Q ss_pred             Ccc-eeEEEEeCCCeeeEEee---eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         95 DYV-AVESWISDQGEELFVDM---TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        95 ~p~-p~i~W~k~~~~~l~~~~---~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .|. +.++|+|++...+....   ....++.|.+  ...|.|.+++. |  |.|+|.|.|..
T Consensus       160 ~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~--~s~L~i~~~~~-~--g~y~C~v~n~~  216 (242)
T 1hxm_B          160 FPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMK--FSWLTVPEKSL-D--KEHRCIVRHEN  216 (242)
T ss_dssp             SSCCEEEEEEESSSCCCCCCEECCCEECSSSEEE--EEEEEECTGGG-G--SCEEEEEEETT
T ss_pred             ECCCeEEEEEcCCCEeecCccccceecCCCcEEE--EEEEEEccccC-C--CEEEEEEEeCC
Confidence            254 78999999742332110   0012234433  23699988775 4  99999999986

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.22  E-value=4.2e-11  Score=96.73  Aligned_cols=76  Identities=25%  Similarity=0.434  Sum_probs=58.4

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcceEEE
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~C~  147 (167)
                      ..+..+.+|+++.|.|.+.   |.|.|.++|+|++ +..+.... ...++|+.+..   ++.|.|.+++.+|+ |.|+|.
T Consensus         7 ~~~~~~~~G~~v~l~C~~~---g~p~p~v~W~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~   81 (389)
T 2jll_A            7 LKNETTYENGQVTLVCDAE---GEPIPEITWKRAVDGFTFTEGD-KSLDGRIEVKGQHGSSSLHIKDVKLSDS-GRYDCE   81 (389)
T ss_dssp             CCCEEEETTSEEEEEEEEE---CSSCCEEEEEETTTTEEECC---CCSSSSEEEEECSSEEEEEEESCCGGGC-EEEEEE
T ss_pred             cCceEEeCCCeEEEEEEee---cccCCeEEEEeCCCCceeccCc-CCCCCeEEEeccCCcceEEEcccChhhC-EEEEEE
Confidence            5677889999999999998   4589999999992 24543210 01246776653   45899999999999 999999


Q ss_pred             eeecC
Q psy12724        148 TKHRL  152 (167)
Q Consensus       148 a~n~~  152 (167)
                      |.|..
T Consensus        82 a~n~~   86 (389)
T 2jll_A           82 AASRI   86 (389)
T ss_dssp             EECSS
T ss_pred             EEeCC
Confidence            99976

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.22  E-value=8.5e-11  Score=81.47  Aligned_cols=85  Identities=22%  Similarity=0.289  Sum_probs=59.1

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-------eecCCceEEEccCCeEEEeecCcCCCCcceE
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-------TESTDGKYLVLPSGELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-------~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~  145 (167)
                      .+..+.+|++|+|+|...+. ..+.+.+.|+|++ ..+.-..       .+.-.+|+.+..++.|.|++++.+|+ |.|.
T Consensus        11 ~~v~~~~G~~v~L~C~~~~~-~~~~~~v~W~k~~-~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~-G~Y~   87 (117)
T 3q0h_A           11 GNISAEKGGSIILQCHLSST-TAQVTQVNWEQQD-QLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDT-GEYF   87 (117)
T ss_dssp             CCEEEETTCCEEECEEEESC-CCEEEEEEEEETT-EEEEEEETTTEEECCGGGTTTEEECSTTCEEECSCCGGGC-EEEE
T ss_pred             CCEEEecCCCEEEEEEecCC-CCCEEEEEEEeCC-EEEEEEECCCCceeCccccCcEEeCCceEEEEeeCChhhC-EEEE
Confidence            34678899999999998642 2345689999986 3332110       01124678776788999999999999 9999


Q ss_pred             EEeee-cC---cceEEEee
Q psy12724        146 CRTKH-RL---TGETRLSA  160 (167)
Q Consensus       146 C~a~n-~~---~~~~~l~~  160 (167)
                      |.+.+ ..   .+.+.|++
T Consensus        88 C~v~~~~~g~~~~~~~L~V  106 (117)
T 3q0h_A           88 CIYHTYPDGTYTGRIFLEV  106 (117)
T ss_dssp             EEEEEETTCCEEEEEEEEE
T ss_pred             EEEEECCCCCeEEEEEEEE
Confidence            98754 32   34456655

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.22  E-value=4.8e-11  Score=93.37  Aligned_cols=75  Identities=21%  Similarity=0.392  Sum_probs=59.1

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc--cCC--eEEEeecCcCCCCcc
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL--PSG--ELHIRDVGPEDGYKS  143 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~--~~g--~L~I~~v~~~D~~G~  143 (167)
                      +.-.+.+..+.+|+++.|.|.+.   +.|.|.++|+|++ ..+..     .+.++.+.  .+|  .|.|.+++.+|+ |.
T Consensus         7 ~~~~p~~~~v~~G~~v~l~C~~~---g~p~~~v~W~~~~-~~~~~-----~~~~~~~~~~~~~~~~L~i~~v~~~d~-G~   76 (305)
T 2nzi_A            7 FKEELRNLNVRYQSNATLVCKVT---GHPKPIVKWYRQG-KEIIA-----DGLKYRIQEFKGGYHQLIIASVTDDDA-TV   76 (305)
T ss_dssp             EEECCCCEEECTTCCEEEEEEEE---CSSCCEEEEEETT-EECCC-----CSSSEEEEEETTTEEEEEESSCCGGGC-SE
T ss_pred             eeecccceEEeCCCcEEEEEEEe---CCCCCeEEEEECC-EEccc-----CCCeEEEEECCCCEEEEEEccCChhhC-eE
Confidence            44455677889999999999997   4588999999997 45532     23455443  345  899999999999 99


Q ss_pred             eEEEeeecC
Q psy12724        144 YQCRTKHRL  152 (167)
Q Consensus       144 Y~C~a~n~~  152 (167)
                      |+|.|.|..
T Consensus        77 Y~C~a~n~~   85 (305)
T 2nzi_A           77 YQVRATNQG   85 (305)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEcCC
Confidence            999999986

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.21  E-value=4.1e-11  Score=88.80  Aligned_cols=68  Identities=19%  Similarity=0.224  Sum_probs=51.9

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcc-----eeEEEEeCCCeeeEEeeeecCCceEEEccC------CeEEEeecCcCCCCcc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYV-----AVESWISDQGEELFVDMTESTDGKYLVLPS------GELHIRDVGPEDGYKS  143 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~-----p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~------g~L~I~~v~~~D~~G~  143 (167)
                      ..+.+|+++.|+|.+.+.   |.     +.++|+|+++....      ..+|+.+..+      +.|.|.+++.+|+ |.
T Consensus        12 v~v~~G~~v~L~C~~~~~---p~~~~~~~~v~W~k~~~~~~~------~~~r~~~~~~~~~~~~~~L~I~~v~~~D~-G~   81 (202)
T 3bp6_B           12 YTVDVGSSVSLECDFDRR---ECTELEGIRASLQKVENDTSL------QSERATLLEEQLPLGKALFHIPSVQVRDS-GQ   81 (202)
T ss_dssp             EEEETTSCEEEEEEECTT---C---CTTEEEEEEECC--CCC------BCSSCEECGGGGGGTEEEEEECSCCGGGC-EE
T ss_pred             EEEeCCCcEEEEEEecCC---CCCCccceEEEEEcCCCcccc------cCCceEEeeccccCCeeEEEECCCCHHHC-cE
Confidence            567899999999999753   54     88999995432221      2456665543      5799999999999 99


Q ss_pred             eEEEeeecC
Q psy12724        144 YQCRTKHRL  152 (167)
Q Consensus       144 Y~C~a~n~~  152 (167)
                      |+|.|.|..
T Consensus        82 Y~C~~~~~~   90 (202)
T 3bp6_B           82 YRCLVICGA   90 (202)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEeCC
Confidence            999999986

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.21  E-value=2.2e-11  Score=102.04  Aligned_cols=124  Identities=14%  Similarity=0.266  Sum_probs=77.3

Q ss_pred             EEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee---------cCCc----eE--------EEeeeEEEecCe----
Q psy12724         21 FVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI---------DNQD----FV--------VSQSYTVNIMDE----   75 (167)
Q Consensus        21 ~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~---------~~~~----~v--------~~g~y~c~~~~~----   75 (167)
                      .+.+|+++.|.|.+.+.+....+.|+| ++ +.....         ++..    .+        ..|.|+|.+.+.    
T Consensus       258 ~~~~G~~v~L~C~~~g~~p~~~~~i~W-~~-~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~  335 (475)
T 1iga_A          258 DLLLGSEANLTCTLTGLRDASGVTFTW-TP-SSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKT  335 (475)
T ss_pred             HhccCCceEEEEEEEcccCCCceEEEE-CC-CCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCC
Confidence            368999999999998764311147999 43 222110         1110    01        269999987430    


Q ss_pred             -------------------------EEEeCCcEEEEeeeCCccCCc-ceeEEEEeCCCeeeEEee------eec---CCc
Q psy12724         76 -------------------------HVLKGNSAVLKCHIPSFVADY-VAVESWISDQGEELFVDM------TES---TDG  120 (167)
Q Consensus        76 -------------------------~v~~G~~a~l~C~~~~~~~~p-~p~i~W~k~~~~~l~~~~------~~~---~~~  120 (167)
                                               .+..|+++.|.|.+.+.  .| .+.++|+||+ ..+....      ...   .++
T Consensus       336 ~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~--~P~~~~v~W~k~g-~~l~~~~~~~~~~~~~~~~~~g  412 (475)
T 1iga_A          336 PLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGF--SPKDVLVRWLQGS-QELPREKYLTWASRQEPSQGTT  412 (475)
T ss_pred             ceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeee--ECCCCEEEEEECC-EECCCCceeecccccccCCCCC
Confidence                                     02358889999999864  23 3589999997 5553210      000   111


Q ss_pred             eEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        121 KYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       121 r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .|.+  ...|.|.....+|. |.|+|.|.|..
T Consensus       413 t~~~--~s~L~i~~~~~~~~-g~YtC~a~n~~  441 (475)
T 1iga_A          413 TFAV--TSILRVAAEDWKKG-DTFSCMVGHEA  441 (475)
T ss_pred             cEEE--EEEEEEChHHhcCC-CEEEEEEEcCC
Confidence            2222  13578888888898 99999999986

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=99.21  E-value=1.4e-10  Score=81.44  Aligned_cols=78  Identities=17%  Similarity=0.250  Sum_probs=51.4

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCee-eEEee---------eecCCceEEEccC------CeEEEeecCc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEE-LFVDM---------TESTDGKYLVLPS------GELHIRDVGP  137 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~-l~~~~---------~~~~~~r~~~~~~------g~L~I~~v~~  137 (167)
                      ...+.+|++|+|+|.+.+........|.|+|++... +.-..         .+...+|..+..+      ..|.|+|++.
T Consensus        14 ~v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~v~~   93 (125)
T 4gos_A           14 ASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKNVQL   93 (125)
T ss_dssp             CEEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESSCCG
T ss_pred             eEEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECCCCh
Confidence            456678999999999853211122368999975321 11100         0011356665533      3799999999


Q ss_pred             CCCCcceEEEeeecC
Q psy12724        138 EDGYKSYQCRTKHRL  152 (167)
Q Consensus       138 ~D~~G~Y~C~a~n~~  152 (167)
                      +|+ |.|.|.+.|..
T Consensus        94 ~D~-G~Y~C~v~~~~  107 (125)
T 4gos_A           94 TDA-GTYKCYIITSK  107 (125)
T ss_dssp             GGC-EEEEEEEEETT
T ss_pred             HHC-EEEEEEEEeCC
Confidence            999 99999999976

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.21  E-value=2.2e-10  Score=95.95  Aligned_cols=132  Identities=14%  Similarity=0.210  Sum_probs=85.4

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cce---ee---ec----------CCc------------eE--
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQ---YQ---ID----------NQD------------FV--   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~---~~---~~----------~~~------------~v--   63 (167)
                      .++..+.+.+|+++.|.|.+.+.+.. .+.+.|+|++ ++.   +.   .+          ..|            .+  
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   84 (475)
T 1iga_A            6 EQSGAEVKKPGASVKVSCKASGYSFT-SYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGL   84 (475)
T ss_pred             ccCCcEEEeCCCCEEEEEEecCCCCC-CceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEE
Confidence            46778999999999999999876422 2469999863 211   10   00          001            11  


Q ss_pred             ------EEeeeEEEecCe----------------EE------------------EeCCcEEEEeeeCCccCCcc-e-eEE
Q psy12724         64 ------VSQSYTVNIMDE----------------HV------------------LKGNSAVLKCHIPSFVADYV-A-VES  101 (167)
Q Consensus        64 ------~~g~y~c~~~~~----------------~v------------------~~G~~a~l~C~~~~~~~~p~-p-~i~  101 (167)
                            .+|.|.|.+.+.                .|                  .+|+.+.|.|.+.+.  .|. | .++
T Consensus        85 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~g~~v~L~C~~~g~--~P~~p~~v~  162 (475)
T 1iga_A           85 SSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGF--FPQEPLSVT  162 (475)
T ss_pred             CCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCccccCCCCeEEEEEEEeee--cCCCceEEE
Confidence                  269999987431                01                  258899999999853  255 4 899


Q ss_pred             EEeCCCeeeEEeee---e-cCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCc
Q psy12724        102 WISDQGEELFVDMT---E-STDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT  153 (167)
Q Consensus       102 W~k~~~~~l~~~~~---~-~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~  153 (167)
                      |+|++. .......   . ..++.|.+.  +.|.|.+++.+|+ |.|+|.|.|...
T Consensus       163 W~~~~~-~~~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~~d~-g~Y~C~a~n~~~  214 (475)
T 1iga_A          163 WSESGQ-GVTARNFPPSQDASGDLYTTS--SQLTLPATQCLAG-KSVTCHVKHYTN  214 (475)
T ss_pred             EcCCCc-ccceEeCCceecCCCCcEEEE--EEEEechhHcCCC-ceEEEEEEECCC
Confidence            999862 2210000   0 122344332  3699999999999 999999999873

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.21  E-value=2.8e-11  Score=86.40  Aligned_cols=89  Identities=19%  Similarity=0.319  Sum_probs=60.4

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-eecCCceEEEcc----CCeEEEeecCcCCCCc
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-TESTDGKYLVLP----SGELHIRDVGPEDGYK  142 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-~~~~~~r~~~~~----~g~L~I~~v~~~D~~G  142 (167)
                      +...+.+..+.+|+++.|+|.+.+   .|.+.+.|++.+...+.... ....++|+.+..    ++.|.|++++.+|+ |
T Consensus        41 ~~~~p~~~~v~~G~~v~L~C~~~~---~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~Ds-G  116 (145)
T 1z9m_A           41 SQPWTSDETVVAGGTVVLKCQVKD---HEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADE-G  116 (145)
T ss_dssp             TCCBCCCEEEETTSCEEEEEECSC---CTTCCEEEECTTCCEEEETTEECSCCTTEEEEEECSSEEEEEECSCCGGGC-E
T ss_pred             eecCCceEEEEcCCCEEEEEEEcC---CCCcEEEEECCCCcEEEECCceecccCCEEEecCCCCeEEEEECCCChhhC-E
Confidence            344456778999999999999974   47788999965432221100 001245665543    45899999999999 9


Q ss_pred             ceEEEeeecC--cceEEEee
Q psy12724        143 SYQCRTKHRL--TGETRLSA  160 (167)
Q Consensus       143 ~Y~C~a~n~~--~~~~~l~~  160 (167)
                      .|+|.|.|..  +..+.|.+
T Consensus       117 ~Y~C~~~n~~~~~~~~~L~V  136 (145)
T 1z9m_A          117 EYTCSIFTMPVRTAKSLVTV  136 (145)
T ss_dssp             EEEEEECSSSCEEEEEEEEE
T ss_pred             EEEEEEEcCCCceEEEEEEE
Confidence            9999999972  23344444

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.20  E-value=7.1e-11  Score=88.25  Aligned_cols=75  Identities=24%  Similarity=0.420  Sum_probs=59.2

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc--cCC--eEEEeecCc-CCCCc
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL--PSG--ELHIRDVGP-EDGYK  142 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~--~~g--~L~I~~v~~-~D~~G  142 (167)
                      +.-.+.+..+.+|+++.|.|.+.   +.|.|.++|+|++ ..+.     ....|+.+.  .+|  .|.|.+++. +|+ |
T Consensus         9 ~~~~p~~~~v~~G~~v~l~C~~~---g~p~~~v~W~~~~-~~~~-----~~~~~~~~~~~~~~~~~L~i~~v~~~~d~-G   78 (212)
T 2yd1_A            9 IIRKPQNQGVRVGGVASFYCAAR---GDPPPSIVWRKNG-KKVS-----GTQSRYTVLEQPGGISILRIEPVRAGRDD-A   78 (212)
T ss_dssp             EEECCCCEEEETTSCEEEEEEEE---CSSCCEEEEEETT-EECC-----TTSTTEEEEEETTTEEEEEESSCCTTTTC-S
T ss_pred             EEcCCCceEEecCCEEEEEEEEc---cCCCCeEEEEECC-EECC-----CCcceeEEEEcCCCeEEEEEEecCCCCcC-c
Confidence            44455677899999999999997   4588899999997 4553     135566554  344  799999999 999 9


Q ss_pred             ceEEEeeecC
Q psy12724        143 SYQCRTKHRL  152 (167)
Q Consensus       143 ~Y~C~a~n~~  152 (167)
                      .|+|.|.|..
T Consensus        79 ~Y~C~~~n~~   88 (212)
T 2yd1_A           79 PYECVAENGV   88 (212)
T ss_dssp             EEEEEEECSS
T ss_pred             eEEEEEEeCC
Confidence            9999999976

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.20  E-value=1.1e-10  Score=85.22  Aligned_cols=76  Identities=20%  Similarity=0.280  Sum_probs=58.8

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEe-CCCeeeEEeeeecCCceEEEc----cCCeEEEeecCcCCCCc
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWIS-DQGEELFVDMTESTDGKYLVL----PSGELHIRDVGPEDGYK  142 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k-~~~~~l~~~~~~~~~~r~~~~----~~g~L~I~~v~~~D~~G  142 (167)
                      +...+.+..+.+|+++.|.|.+.+.  .|.+.++|+| ++ ..+..     ...++.+.    .++.|.|.+++.+|+ |
T Consensus         5 v~~~p~~~~v~~G~~v~l~C~~~~~--~~~~~v~W~~~~g-~~~~~-----~~~~~~~~~~~~~~~~L~i~~~~~~d~-G   75 (191)
T 1epf_A            5 VDIVPSQGEISVGESKFFLCQVAGD--AKDKDISWFSPNG-EKLSP-----NQQRISVVWNDDDSSTLTIYNANIDDA-G   75 (191)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCC--SCCCEEEEECTTS-CEECC-----BSSSEEEEEEETTEEEEEECSCCGGGC-E
T ss_pred             EEecCCCcEEcCCCCEEEEEECCCC--CCCceEEEEeCCC-ccccC-----CCCeEEEEECCCCceEEEEccCCcccC-E
Confidence            3445567889999999999999853  2378999999 55 55532     34566654    346899999999999 9


Q ss_pred             ceEEEeeecC
Q psy12724        143 SYQCRTKHRL  152 (167)
Q Consensus       143 ~Y~C~a~n~~  152 (167)
                      .|+|.|.|..
T Consensus        76 ~Y~C~~~~~~   85 (191)
T 1epf_A           76 IYKCVVTAED   85 (191)
T ss_dssp             EEEEEEEETT
T ss_pred             EEEEEEEcCC
Confidence            9999999986

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.20  E-value=1e-11  Score=102.75  Aligned_cols=131  Identities=11%  Similarity=0.181  Sum_probs=85.7

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Ccee---ee---c----------CCc------------eE--
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQY---QI---D----------NQD------------FV--   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~---~~---~----------~~~------------~v--   63 (167)
                      .++..+.|.+|+++.|.|.+.+.+.+ .+.+.|+|++ +..+   ..   +          ..|            .+  
T Consensus         4 ~~~~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   82 (434)
T 1igy_B            4 QESGAELARPGASVKMSCKASGYTFT-TYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHL   82 (434)
T ss_dssp             ECCCCCEECTBCCEEECCEECSSCGG-GCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEE
T ss_pred             ECCCCeEecCCCCEEEEEEccCCccc-CceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEE
Confidence            34567889999999999999876421 2469999864 2211   00   0          001            11  


Q ss_pred             ------EEeeeEEEecCe-----------------------------EEEeCCcEEEEeeeCCccCCcce-eEEEEeCCC
Q psy12724         64 ------VSQSYTVNIMDE-----------------------------HVLKGNSAVLKCHIPSFVADYVA-VESWISDQG  107 (167)
Q Consensus        64 ------~~g~y~c~~~~~-----------------------------~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~  107 (167)
                            .+|.|.|.+.+.                             .+.+|+++.|.|.+.+.  .|.| .++|+|++.
T Consensus        83 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~--~P~p~~v~W~k~~~  160 (434)
T 1igy_B           83 SSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGY--FPEPVTVTWNSGSL  160 (434)
T ss_dssp             CSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEE--BSSCCEEEETTTTB
T ss_pred             CCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeee--cCCCeEEEEeeCCc
Confidence                  279999987430                             11368999999999753  2666 899999973


Q ss_pred             eeeE-Eee-eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCc
Q psy12724        108 EELF-VDM-TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT  153 (167)
Q Consensus       108 ~~l~-~~~-~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~  153 (167)
                       .+. ... .....++|..  .+.|.|.+++.+|  |.|+|.|.|...
T Consensus       161 -~~~~~~~~~~~~~~~~~~--~s~L~i~~~~~~d--g~Y~C~a~n~~~  203 (434)
T 1igy_B          161 -SSGVHTFPAVLQSDLYTL--SSSVTVPSSPRPS--ETVTCNVAHPAS  203 (434)
T ss_dssp             -CSSEEECCCEECSSCEEE--EEEEEEETTTTTS--SCCEEEEECTTT
T ss_pred             -CCCeEecCceecCCcEEE--EEEEEEcchhcCC--CcEEEEEEeCCC
Confidence             321 000 0001244543  2579999999988  999999999873

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.20  E-value=9.6e-11  Score=87.21  Aligned_cols=76  Identities=17%  Similarity=0.278  Sum_probs=56.4

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeee------------ecCCceEEEccCCeEEEeecCcCCC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMT------------ESTDGKYLVLPSGELHIRDVGPEDG  140 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~------------~~~~~r~~~~~~g~L~I~~v~~~D~  140 (167)
                      ....+.+|++|.|+|.+.+  +.+.+.|.|+|++ ..+.....            +...+|+.+..++.|.|++++.+|+
T Consensus         6 ~~v~~~~G~~v~L~C~~~~--~~~~~~v~W~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~   82 (193)
T 2if7_A            6 LMVNGILGESVTLPLEFPA--GEKVNFITWLFNE-TSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDT   82 (193)
T ss_dssp             EEEEEETTSCEEECCCCCC--CSCCCEEEEEETT-EEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGC
T ss_pred             eEEEEEecCeEEEeccCCC--cccccEEEEEECC-EEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccC
Confidence            3467889999999999864  2356789999986 44321000            0001467777789999999999999


Q ss_pred             CcceEEEeeecC
Q psy12724        141 YKSYQCRTKHRL  152 (167)
Q Consensus       141 ~G~Y~C~a~n~~  152 (167)
                       |.|+|.|.|..
T Consensus        83 -G~Y~C~~~~~~   93 (193)
T 2if7_A           83 -GSYRAQISTKT   93 (193)
T ss_dssp             -EEEEEEEECSS
T ss_pred             -ceEEEEEEecC
Confidence             99999999876

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=99.20  E-value=1.1e-10  Score=79.18  Aligned_cols=76  Identities=18%  Similarity=0.204  Sum_probs=51.6

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcc---eeEEEEeCCCeeeEEeee---------ecCCceEEEc-cCCeEEEeecCcCCCC
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYV---AVESWISDQGEELFVDMT---------ESTDGKYLVL-PSGELHIRDVGPEDGY  141 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~---p~i~W~k~~~~~l~~~~~---------~~~~~r~~~~-~~g~L~I~~v~~~D~~  141 (167)
                      ..+.+|++|.|+|.+.+. ..+.   ..+.|+|++...+.....         +.-.+|.... .++.|.|++++.+|+ 
T Consensus         4 v~~~~G~~v~L~C~~~~~-~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~-   81 (110)
T 1ncn_A            4 IQAYFNETADLPCQFANS-QNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDK-   81 (110)
T ss_dssp             EEEETTSCEEEECCCCCT-TCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGC-
T ss_pred             EEEEeCCCEEEEeEeCCC-CcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEECCCEEEEEcCCChHHC-
Confidence            467899999999998632 1111   248999986322321110         0112456544 457899999999999 


Q ss_pred             cceEEEeeecC
Q psy12724        142 KSYQCRTKHRL  152 (167)
Q Consensus       142 G~Y~C~a~n~~  152 (167)
                      |.|.|.+.|..
T Consensus        82 G~Y~C~v~~~~   92 (110)
T 1ncn_A           82 GLYQCIIHHKK   92 (110)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEEEEEcCC
Confidence            99999999876

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.20  E-value=3.3e-11  Score=88.06  Aligned_cols=70  Identities=21%  Similarity=0.292  Sum_probs=56.9

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC-eEEEeecCcCCCCcceEEEeeec
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG-ELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g-~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      .+..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.     ....|+.+..++ .|.|.+++.+|+ |.|+|.+.|.
T Consensus        15 ~~~~~~~G~~v~l~C~~~~---~p~~~i~W~~~~-~~~~-----~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~~~~~   84 (192)
T 2iep_A           15 ETVDALVEEVATFMCAVES---YPQPEISWTRNK-ILIK-----LFDTRYSIRENGQLLTILSVEDSDD-GIYCCTANNG   84 (192)
T ss_dssp             CEEEEETTSCEEEECCEEE---ESCCEEEEEETT-EECC-----TTCTTEEEEGGGTEEEESSCCGGGC-EEEEEEEECS
T ss_pred             cceeeeCCCcEEEEeeCCC---CCCCeEEEEECC-EEcc-----ccCccEEEcCCccEEEEcCCCcccC-eEEEEEEEcC
Confidence            4467889999999999974   488899999997 4543     235677776555 699999999999 9999999997


Q ss_pred             C
Q psy12724        152 L  152 (167)
Q Consensus       152 ~  152 (167)
                      .
T Consensus        85 ~   85 (192)
T 2iep_A           85 V   85 (192)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.19  E-value=9e-11  Score=87.79  Aligned_cols=76  Identities=17%  Similarity=0.320  Sum_probs=56.6

Q ss_pred             eeEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc---CCeEEEeecC-cCCCCc
Q psy12724         67 SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP---SGELHIRDVG-PEDGYK  142 (167)
Q Consensus        67 ~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~-~~D~~G  142 (167)
                      .+.-.+.+..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+..     ...+.....   +..|.|.+++ .+|+ |
T Consensus         8 ~~~~~p~~~~v~~G~~v~L~C~~~g---~p~~~v~W~k~~-~~~~~-----~~~~~~~~~~~~~~~L~i~~v~~~~d~-G   77 (212)
T 2yd6_A            8 RFTRTPVDQTGVSGGVASFICQATG---DPRPKIVWNKKG-KKVSN-----QRFEVIEFDDGSGSVLRIQPLRTPRDE-A   77 (212)
T ss_dssp             EEEECCCCEEEETTSCEEEEEEEEE---ESCCEEEEEETT-EECCC-----TTEEEEEEGGGTEEEEEECSCCTTTTC-E
T ss_pred             eEEeCcceeEEecCCeEEEEEEEee---CCCCEEEEEECC-cCCCC-----CceeEEEEcCCCceEEEEeccCCCCCC-e
Confidence            3555567788999999999999974   488999999997 45431     111222222   2369999995 9999 9


Q ss_pred             ceEEEeeecC
Q psy12724        143 SYQCRTKHRL  152 (167)
Q Consensus       143 ~Y~C~a~n~~  152 (167)
                      .|+|.|.|..
T Consensus        78 ~Y~C~a~n~~   87 (212)
T 2yd6_A           78 IYECVASNNV   87 (212)
T ss_dssp             EEEEEEEETT
T ss_pred             EEEEEEEcCC
Confidence            9999999986

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.19  E-value=2.5e-11  Score=89.30  Aligned_cols=76  Identities=18%  Similarity=0.250  Sum_probs=57.5

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeC-CccCCcceeEEEEeCCCeeeEEeeeecCCceEEE--cc--------CCeEEEeecC
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIP-SFVADYVAVESWISDQGEELFVDMTESTDGKYLV--LP--------SGELHIRDVG  136 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~-~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~--~~--------~g~L~I~~v~  136 (167)
                      |.-.+.+..+.+|+++.|.|.+. +   .|.|.++|+||+ ..+...    ...++.+  ..        ++.|.|.+++
T Consensus         5 ~~~~p~~~~v~~G~~v~l~C~~~~~---~p~~~v~W~~~g-~~l~~~----~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   76 (195)
T 2c5d_C            5 FVGNPGNITGARGLTGTLRCQLQVQ---GEPPEVHWLRDG-QILELA----DSTQTQVPLGEDEQDDWIVVSQLRITSLQ   76 (195)
T ss_dssp             EEECCCCEEECTTCCEEEEEEEEEE---SSCCCCEEEETT-EECCSC----EEEEEEEECSSSTTSEEEEEEEEEESSCC
T ss_pred             eccChhheEEecCCcEEEecccccC---CCCcEEEEEECC-EEcccC----CCCceEEEEccccccceeeccEEEEEecc
Confidence            45556778899999999999997 4   488899999997 555321    1123322  23        3579999999


Q ss_pred             cCCCCcceEEEeeecC
Q psy12724        137 PEDGYKSYQCRTKHRL  152 (167)
Q Consensus       137 ~~D~~G~Y~C~a~n~~  152 (167)
                      .+|+ |.|+|.|.|..
T Consensus        77 ~~d~-G~Y~C~~~~~~   91 (195)
T 2c5d_C           77 LSDT-GQYQCLVFLGH   91 (195)
T ss_dssp             STTC-EEEEEEEEETT
T ss_pred             ccCC-cEEEEEEEeCC
Confidence            9999 99999999975

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.19  E-value=1.1e-10  Score=90.23  Aligned_cols=131  Identities=15%  Similarity=0.229  Sum_probs=81.7

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cc--e-eee--c---------CCc-----------eE--
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GG--Q-YQI--D---------NQD-----------FV--   63 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~--~-~~~--~---------~~~-----------~v--   63 (167)
                      .+...|.++.+.+|+++.|.|.+.. +   .+.+.|+|++ +.  . +..  +         ..|           .+  
T Consensus         5 ~v~q~p~~v~v~~G~~v~L~C~~~~-~---~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I   80 (252)
T 1oga_E            5 GITQSPKYLFRKEGQNVTLSCEQNL-N---HDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTV   80 (252)
T ss_dssp             CEECSCSEEEEETTCCEEECCEECS-C---CSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEE
T ss_pred             cceEcCCeEEEcCCCcEEEEEEeCC-C---CCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEE
Confidence            4556788899999999999999853 2   2479999863 11  1 100  0         001           11  


Q ss_pred             ------EEeeeEEEecCe---------------------------EEE--------eCCcEEEEeeeCCccCCcc-eeEE
Q psy12724         64 ------VSQSYTVNIMDE---------------------------HVL--------KGNSAVLKCHIPSFVADYV-AVES  101 (167)
Q Consensus        64 ------~~g~y~c~~~~~---------------------------~v~--------~G~~a~l~C~~~~~~~~p~-p~i~  101 (167)
                            .+|.|.|.+.+.                           .+.        +|+.+.|.|.+.+.  .|. +.++
T Consensus        81 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~--~P~~~~v~  158 (252)
T 1oga_E           81 TSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGF--YPDHVELS  158 (252)
T ss_dssp             CSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEE--BSSCEEEE
T ss_pred             CcCChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeE--cCCCcEEE
Confidence                  279999976431                           011        37899999999753  254 4899


Q ss_pred             EEeCCCeeeEEeeee----------cCCceEEEccCCeEEEeecCcC-CCCcceEEEeeecC
Q psy12724        102 WISDQGEELFVDMTE----------STDGKYLVLPSGELHIRDVGPE-DGYKSYQCRTKHRL  152 (167)
Q Consensus       102 W~k~~~~~l~~~~~~----------~~~~r~~~~~~g~L~I~~v~~~-D~~G~Y~C~a~n~~  152 (167)
                      |+||+ ..+.+....          ..++.|.+.  ..|.|.....+ |. |.|+|.|.|..
T Consensus       159 W~~~g-~~l~~~~~~~~~~~~~~~~~~~gt~~~~--s~L~i~~~~~~d~~-~~ytC~v~~~~  216 (252)
T 1oga_E          159 WWVNG-KEVHSGVSTDPQPLKEQPALNDSRYSLS--SRLRVSATFWQNPR-NHFRCQVQFYG  216 (252)
T ss_dssp             EEETT-EEECSSEEECSSCEESCTTSTTCCEEEE--EEEEEEHHHHTCTT-CEEEEEEEECC
T ss_pred             EEECC-EECCCCcccccccccccccCCCCCEEEE--EEEEECHHHhccCC-CEEEEEEEcCC
Confidence            99987 555321000          011222221  24888887765 55 78999999975

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.18  E-value=5.1e-11  Score=91.15  Aligned_cols=129  Identities=14%  Similarity=0.207  Sum_probs=78.5

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cce---eee--c---------CCc-----------eE----
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQ---YQI--D---------NQD-----------FV----   63 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~---~~~--~---------~~~-----------~v----   63 (167)
                      ...|.++.+.+|+++.|.|.+.. +   .+.+.|+|++ +..   +..  +         ..|           .+    
T Consensus         3 ~q~p~~v~v~~G~~v~L~C~~~~-~---~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~   78 (238)
T 1bec_A            3 TQSPRNKVAVTGGKVTLSCQQTN-N---HNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILEL   78 (238)
T ss_dssp             EEECSEEEEETTCCEEEEEEESS-C---CSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESS
T ss_pred             ccCCCeeEEeCCCcEEEEEEeCC-C---CceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEec
Confidence            45678899999999999999853 2   2579999864 211   100  0         011           11    


Q ss_pred             ----EEeeeEEEecCe---------------E------------E----------EeCCcEEEEeeeCCccCCcc-eeEE
Q psy12724         64 ----VSQSYTVNIMDE---------------H------------V----------LKGNSAVLKCHIPSFVADYV-AVES  101 (167)
Q Consensus        64 ----~~g~y~c~~~~~---------------~------------v----------~~G~~a~l~C~~~~~~~~p~-p~i~  101 (167)
                          .+|.|.|.+.+.               .            +          .+|+.+.|.|.+.+.  .|. +.++
T Consensus        79 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~--~P~~~~v~  156 (238)
T 1bec_A           79 ATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGF--FPDHVELS  156 (238)
T ss_dssp             CCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEE--BSCCEEEE
T ss_pred             CCcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeE--eCCCcEEE
Confidence                279999987431               0            1          148899999999753  254 4899


Q ss_pred             EEeCCCeeeEEeeeecCCceEEEccCCe------EEEeecCcCC-CCcceEEEeeecC
Q psy12724        102 WISDQGEELFVDMTESTDGKYLVLPSGE------LHIRDVGPED-GYKSYQCRTKHRL  152 (167)
Q Consensus       102 W~k~~~~~l~~~~~~~~~~r~~~~~~g~------L~I~~v~~~D-~~G~Y~C~a~n~~  152 (167)
                      |+||+ ..+.+...  .........+|.      |.|.....+| . |.|+|.|.|..
T Consensus       157 W~~~g-~~~~~~~~--~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~-~~ytC~v~~~~  210 (238)
T 1bec_A          157 WWVNG-KEVHSGVS--TDPQAYKESNYSYCLSSRLRVSATFWHNPR-NHFRCQVQFHG  210 (238)
T ss_dssp             EEETT-EEECTTEE--ECSSCEEEETTEEEEEEEECCCHHHHTCTT-CEEEEEEEECC
T ss_pred             EEECC-EECCCcee--cccceEeCCCCCEEEEEEEEEcHHHhccCC-CeEEEEEEcCC
Confidence            99987 45531100  000111123443      4555555555 5 67999999975

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=99.18  E-value=5.4e-11  Score=84.55  Aligned_cols=83  Identities=17%  Similarity=0.263  Sum_probs=59.6

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcceEEE
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~C~  147 (167)
                      +.+..+.+|++|.|.|.+.+   .  +.+.|+|+. +..+....  ...+||.+..++   .|.|++++.+|+ |.|.|.
T Consensus        24 p~~~~v~~G~~v~L~C~~~~---~--~~v~W~r~~~g~~~~~l~--~~~~r~~~~~~~~~~~L~I~~~~~~Ds-G~Y~C~   95 (133)
T 3khq_A           24 PRFAAKKRSSMVKFHCYTNH---S--GALTWFRKRGSQQPQELV--SEEGRIVQTQNGSVYTLTIQNIQYEDN-GIYFCK   95 (133)
T ss_dssp             CSEEEECTTCCEEEEEEESS---S--SCEEEEEECTTSCCEECC--CTTTTEEEEEETTEEEEEECSCCGGGC-EEEEEE
T ss_pred             CceEEEeCCCeEEEEEEeCC---C--CEEEEEEeCCCCCCEEEE--EeCCCEEEEcCCCEEEEEECCCChHHC-EEEEEE
Confidence            44567889999999999974   2  789999973 12211100  135788776555   599999999999 999999


Q ss_pred             eeecC-------cceEEEeeeC
Q psy12724        148 TKHRL-------TGETRLSATK  162 (167)
Q Consensus       148 a~n~~-------~~~~~l~~~~  162 (167)
                      |.|..       +..++|.+.+
T Consensus        96 a~n~~g~~~~~~g~gt~L~V~~  117 (133)
T 3khq_A           96 QKCDSANHNVTDSCGTELLVLG  117 (133)
T ss_dssp             ESSCC-------CCCEEEEEC-
T ss_pred             EEeCCCCcceeECCCEEEEEEe
Confidence            99873       4556777644

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.18  E-value=6.1e-11  Score=92.83  Aligned_cols=134  Identities=16%  Similarity=0.216  Sum_probs=85.2

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Ccee---e---e-c---------CCc------------
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQY---Q---I-D---------NQD------------   61 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~---~---~-~---------~~~------------   61 (167)
                      +....++..+.+.+|+++.|.|.+.+.+.. .+.+.|+|++ +..+   .   . +         ..|            
T Consensus         7 ~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   85 (261)
T 2xqy_G            7 QVQLQQPGAELVKPGASVKMSCKASGYSFT-SYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTV   85 (261)
T ss_dssp             CCEEECCSEEEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEE
T ss_pred             ceeEECCCCEEEcCCCCEEEEEEeCCcccC-CceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEE
Confidence            344456778899999999999999876521 2469999864 2211   0   0 0         011            


Q ss_pred             eE--------EEeeeEEEecCe-------------E-------------------EEeCCcEEEEeeeCCccCCcce-eE
Q psy12724         62 FV--------VSQSYTVNIMDE-------------H-------------------VLKGNSAVLKCHIPSFVADYVA-VE  100 (167)
Q Consensus        62 ~v--------~~g~y~c~~~~~-------------~-------------------v~~G~~a~l~C~~~~~~~~p~p-~i  100 (167)
                      .+        .+|.|.|.+.+.             .                   +..|+++.|.|.+.+.  .|.| .+
T Consensus        86 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~--~P~~i~v  163 (261)
T 2xqy_G           86 YIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGY--FPEPVTL  163 (261)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEE--BSSCCEE
T ss_pred             EEEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeE--eCCCCEE
Confidence            11        169999987430             0                   1248899999999753  3666 89


Q ss_pred             EEEeCCCeeeEEeeee--cCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        101 SWISDQGEELFVDMTE--STDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       101 ~W~k~~~~~l~~~~~~--~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +|+|++ ..+......  ...+.|..  .+.|.|.++..+|  |.|+|.|.|..
T Consensus       164 ~W~k~g-~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~~--g~YtC~v~n~~  212 (261)
T 2xqy_G          164 TWNSGS-LSSGVHTFPAVLQSDLYTL--SSSVTVTSSTWPS--QSITCNVAHPA  212 (261)
T ss_dssp             EEGGGT-CCTTEEECCCEEETTEEEE--EEEEEEETTTTTT--SCCEEEEEEGG
T ss_pred             EEecCC-CcCceEecCceecCCcEEE--EEEEEEeccccCC--CEEEEEEEECC
Confidence            999987 333110000  01144443  3579999888855  99999999976

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.18  E-value=1.9e-10  Score=101.40  Aligned_cols=113  Identities=13%  Similarity=0.200  Sum_probs=75.0

Q ss_pred             CcEEEEeecCCCCCCcceeeEEeeCCCceee-------ec---CCce-E----E----EeeeEE----------E-----
Q psy12724         26 NAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ-------ID---NQDF-V----V----SQSYTV----------N-----   71 (167)
Q Consensus        26 ~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~-------~~---~~~~-v----~----~g~y~c----------~-----   71 (167)
                      .++.+.|.+.+.|.   |.|.|.|++.+...       ..   ...+ +    +    .|.|.|          .     
T Consensus        92 g~l~v~c~~~g~P~---p~i~W~k~g~~~~~~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~~  168 (731)
T 2v5y_A           92 GLLNVYVKVNNGPL---GNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHF  168 (731)
T ss_dssp             EEEEEEEEETTCCC---CSEEEEECCCCCSSCEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCEE
T ss_pred             ceEEEEEecCCCCc---cceeEEEeCCcCCceeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeeccccccccc
Confidence            47889999998875   47999999753210       01   0110 0    0    232222          1     


Q ss_pred             --ecCeEEEeCCcEEEEeeeCCccCCcceeEE-EE--eCCCeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcc
Q psy12724         72 --IMDEHVLKGNSAVLKCHIPSFVADYVAVES-WI--SDQGEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKS  143 (167)
Q Consensus        72 --~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~-W~--k~~~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~  143 (167)
                        +.+..+.+|+++.|.|.+.   |+|.|.+. |+  +|+ ..+...      ....+..   .+.|.|.+++.+|+ |.
T Consensus       169 ~~~~~~~v~~G~~v~l~C~~~---g~P~p~i~~W~~~~~g-~~l~~~------~~~~~~~~~~~~~l~I~~~~~~d~-g~  237 (731)
T 2v5y_A          169 LRIQNVEVNAGQFATFQCSAI---GRTVAGDRLWLQGIDV-RDAPLK------EIKVTSSRRFIASFNVVNTTKRDA-GK  237 (731)
T ss_dssp             CCCCCEEEETTSCEEEEEEEE---SCCCTTCEEEEEESSS-CCEEEE------EEEECCSSEEEEEEEECSCCTTTC-EE
T ss_pred             ccccceEEeCCCcEEEEEEeC---CCCCCceeEEEecCCC-cccccc------ceEEeccccceEEEEEcccccccC-eE
Confidence              1356788999999999998   45888887 88  565 455321      1111111   36899999999998 99


Q ss_pred             eEEEeeecC
Q psy12724        144 YQCRTKHRL  152 (167)
Q Consensus       144 Y~C~a~n~~  152 (167)
                      |+|.|.|..
T Consensus       238 Y~c~A~n~~  246 (731)
T 2v5y_A          238 YRCMIRTEG  246 (731)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEECCC
Confidence            999999986

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.18  E-value=8.5e-11  Score=85.97  Aligned_cols=76  Identities=22%  Similarity=0.335  Sum_probs=56.4

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE-ccCC--eEEEeecCcCCCCcce
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV-LPSG--ELHIRDVGPEDGYKSY  144 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~-~~~g--~L~I~~v~~~D~~G~Y  144 (167)
                      +.-.+.+..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+...    ...++.+ ..++  .|.|.+++.+|+ |.|
T Consensus         8 ~~~~~~~~~v~~G~~v~l~C~~~~---~p~~~v~W~~~~-~~~~~~----~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y   78 (194)
T 2a38_A            8 FTQPLQSVVVLEGSTATFEAHISG---FPVPEVSWFRDG-QVISTS----TLPGVQISFSDGRAKLTIPAVTKANS-GRY   78 (194)
T ss_dssp             EEECCCCEEEETTSCEEEEEEEEE---ESCCEEEEEESS-SBCCTT----TSTTCEEEEETTEEEEEESSCCGGGC-EEE
T ss_pred             EEccCCceEEECCCEEEEEEEEEe---cCCCEEEEEECC-EEcccc----cCCceEEEeCCCEEEEEECCCCcccC-EEE
Confidence            344456678899999999999974   488899999997 454321    1122322 2333  799999999999 999


Q ss_pred             EEEeeecC
Q psy12724        145 QCRTKHRL  152 (167)
Q Consensus       145 ~C~a~n~~  152 (167)
                      +|.|.|..
T Consensus        79 ~C~~~n~~   86 (194)
T 2a38_A           79 SLKATNGS   86 (194)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEcCC
Confidence            99999876

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=99.17  E-value=1.2e-10  Score=79.12  Aligned_cols=84  Identities=15%  Similarity=0.217  Sum_probs=55.0

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcce----eEEEEeCCCee-eEEee-----eecCCceEEEcc--------CCeEEEeec
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVA----VESWISDQGEE-LFVDM-----TESTDGKYLVLP--------SGELHIRDV  135 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p----~i~W~k~~~~~-l~~~~-----~~~~~~r~~~~~--------~g~L~I~~v  135 (167)
                      +..+.+|++|.|+|.+..  +.+.+    .+.|+|++... +....     .....+|+.+..        ++.|.|+++
T Consensus         9 ~v~~~~G~~v~L~C~~~~--~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v   86 (118)
T 3udw_C            9 QVPGFLGDSVTLPCYLQV--PNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGL   86 (118)
T ss_dssp             EEEEETTSCEEECCEEEC--CTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSC
T ss_pred             eEEEeeCCcEEEEEEeEC--CCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeec
Confidence            356789999999999832  22322    48999985221 11000     001245676665        568999999


Q ss_pred             CcCCCCcceEEEeee-cC---cceEEEee
Q psy12724        136 GPEDGYKSYQCRTKH-RL---TGETRLSA  160 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n-~~---~~~~~l~~  160 (167)
                      +.+|+ |.|.|.+.| ..   ...+.|.+
T Consensus        87 ~~~D~-G~Y~C~v~~~~~~~~~~~~~L~V  114 (118)
T 3udw_C           87 RVEDE-GNYTCLFVTFPQGSRSVDIWLRV  114 (118)
T ss_dssp             CGGGC-EEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ChHHC-eEEEEEEEECCCCCccceEEEEE
Confidence            99999 999999998 32   34445544

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.16  E-value=7e-11  Score=85.85  Aligned_cols=79  Identities=16%  Similarity=0.262  Sum_probs=58.3

Q ss_pred             EecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc-----CCeEEEeecCcCCCCcceE
Q psy12724         71 NIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP-----SGELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        71 ~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~-----~g~L~I~~v~~~D~~G~Y~  145 (167)
                      .+.+..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.      ...++.+..     ++.|.|.+++.+|+ |.|+
T Consensus         8 ~p~~~~v~~G~~v~l~C~~~~---~p~~~v~W~k~~-~~~~------~~~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~   76 (182)
T 1rhf_A            8 APVKLTVSQGQPVKLNCSVEG---MEEPDIQWVKDG-AVVQ------NLDQLYIPVSEQHWIGFLSLKSVERSDA-GRYW   76 (182)
T ss_dssp             CCEEEEEETTCCEEEEEEEES---CSSCCEEEEETT-EECC------SSEEEEEEEETTEEEEEEEESSCCGGGC-EEEE
T ss_pred             CCcceEEeCCCcEEEEEEEeC---CCCCeEEEEECC-eecC------CCCceEEEecCCCceEEEEEeecCcccC-eEEE
Confidence            345567889999999999984   588899999987 4543      223333322     25899999999999 9999


Q ss_pred             EEeeecC----cceEEEee
Q psy12724        146 CRTKHRL----TGETRLSA  160 (167)
Q Consensus       146 C~a~n~~----~~~~~l~~  160 (167)
                      |.|.|..    +..+.|.+
T Consensus        77 C~~~~~~~~~~~~~~~l~V   95 (182)
T 1rhf_A           77 CQVEDGGETEISQPVWLTV   95 (182)
T ss_dssp             EEESSCTTCEECCCEEEEE
T ss_pred             EEEEcCCCcEEEEEEEEEE
Confidence            9999974    33445544

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.16  E-value=2.8e-10  Score=80.36  Aligned_cols=87  Identities=18%  Similarity=0.223  Sum_probs=56.7

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCe-eeEEee---------eecCCceEEEccC------CeEEEeecCc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGE-ELFVDM---------TESTDGKYLVLPS------GELHIRDVGP  137 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~-~l~~~~---------~~~~~~r~~~~~~------g~L~I~~v~~  137 (167)
                      ...+.+|++|+|+|.+.+......+.+.|+|++.. .+.-..         .+...+|+.+..+      ..|.|++++.
T Consensus        15 ~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~   94 (139)
T 1pko_A           15 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   94 (139)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEccCCH
Confidence            46788999999999986321112368999998631 121100         0011357766543      3799999999


Q ss_pred             CCCCcceEEEeeecC---cceEEEeee
Q psy12724        138 EDGYKSYQCRTKHRL---TGETRLSAT  161 (167)
Q Consensus       138 ~D~~G~Y~C~a~n~~---~~~~~l~~~  161 (167)
                      +|+ |.|.|.+.|..   ...+.|.+.
T Consensus        95 ~D~-G~Y~C~v~~~~~~~~~~~~L~V~  120 (139)
T 1pko_A           95 SDE-GGYTCFFRDHSYQEEAAVELKVE  120 (139)
T ss_dssp             GGC-EEEEEEEEETTEEEEEEEEEEEE
T ss_pred             HHC-EEEEEEEEcCCCceEEEEEEEEe
Confidence            999 99999999976   344556553

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.16  E-value=6.4e-11  Score=86.81  Aligned_cols=72  Identities=19%  Similarity=0.325  Sum_probs=56.1

Q ss_pred             cCeEEEeCCcEEEEee-eCCccCCcc-eeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeee
Q psy12724         73 MDEHVLKGNSAVLKCH-IPSFVADYV-AVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~-~~~~~~~p~-p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      .+..+.+|+++.|.|. +.+   .|. +.++|+|++. .+...   ....++....++.|.|.+++.+|+ |.|+|.+.|
T Consensus        16 ~~~~v~~G~~v~L~C~~~~~---~p~~~~v~W~~~~~-~~~~~---~~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~~~~   87 (201)
T 3s97_C           16 PEVRVKEGKGMVLLCDPPYH---FPDDLSYRWLLNEF-PVFIT---MDKRRFVSQTNGNLYIANVEASDK-GNYSCFVSS   87 (201)
T ss_dssp             CCEEEETTCCEEECCCCCSE---ESSCCEEEEEESST-TCBCC---CSSSEEECTTTCCEEESSCCGGGC-EEEEEEEEE
T ss_pred             ceEEEECCCCEEEecccccc---CCCceEEEEEECCc-eeeee---eCCCeEEEcCCCeEEECcCCcccC-eEEEEEEEe
Confidence            4567899999999999 664   477 8999999984 44221   123444555678999999999999 999999999


Q ss_pred             cC
Q psy12724        151 RL  152 (167)
Q Consensus       151 ~~  152 (167)
                      ..
T Consensus        88 ~~   89 (201)
T 3s97_C           88 PS   89 (201)
T ss_dssp             GG
T ss_pred             cC
Confidence            65

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.15  E-value=3.3e-09  Score=79.74  Aligned_cols=140  Identities=11%  Similarity=0.108  Sum_probs=85.9

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceee-ecCCc---e-E--E--EeeeEEEecC---------
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ-IDNQD---F-V--V--SQSYTVNIMD---------   74 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~-~~~~~---~-v--~--~g~y~c~~~~---------   74 (167)
                      .++.|++..|.+|+++.|.|.+......   .+.|...-.+... .++..   . +  +  .|.|.|.+..         
T Consensus         2 v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~---~~~~~t~l~~~~~~~~~~~~~~l~l~~vs~~g~y~C~~~c~~~~~~~~~   78 (185)
T 1iam_A            2 TSVSPSKVILPRGGSVLVTCSTSCDQPK---LLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKT   78 (185)
T ss_dssp             EEEESSEEEEETTEEEEEEEEECSSSCS---EEEEECSSCEEEECSSSSSEEEEEEEEECSCBCCEEEEECSSCEEEEEC
T ss_pred             eEEECCCcEEeCCCCEEEEEEccCCCCc---cceEEeeCCCccEeccCCceeEEEEEecCcCCEEEEEEECCCCceEEEE
Confidence            4678889999999999999999643322   3677643222233 22211   1 1  1  4899998631         


Q ss_pred             -----------------eEEEeCCcEEEEeeeCCccCCcc--eeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeec
Q psy12724         75 -----------------EHVLKGNSAVLKCHIPSFVADYV--AVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDV  135 (167)
Q Consensus        75 -----------------~~v~~G~~a~l~C~~~~~~~~p~--p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v  135 (167)
                                       ..+.+|+..+|.|.+.+.  .|.  ..|+|+|++ ..+....  ......    +..|.+.. 
T Consensus        79 ~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~--~P~~~l~i~w~kg~-~~l~~~~--~~~~~~----~~tl~~~~-  148 (185)
T 1iam_A           79 FLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGG--APRAQLTVVLLRGE-KELKREP--AVGEPA----EVTTTVLV-  148 (185)
T ss_dssp             EEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECC--BCGGGEEEEEEETT-EEEEEEE--CCTTTE----EEEEEEEC-
T ss_pred             EEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCc--cCCCCcEEEEEeCC-EEccccc--CCCccc----cEEEEEec-
Confidence                             135789999999999863  354  368999997 5553211  001111    11466554 


Q ss_pred             CcCCCCc-ceEEEeeecCc---ce-EEEeeeCCeee
Q psy12724        136 GPEDGYK-SYQCRTKHRLT---GE-TRLSATKGRLV  166 (167)
Q Consensus       136 ~~~D~~G-~Y~C~a~n~~~---~~-~~l~~~~~~~~  166 (167)
                      ..+|. | .|+|.|.|.+.   .. .+-+..+..|.
T Consensus       149 ~reD~-g~~~sC~A~~~l~~~g~~l~~~~s~~~~l~  183 (185)
T 1iam_A          149 RRDHH-GAQFSCRTELDLRPQGLELFENTSAPYQLQ  183 (185)
T ss_dssp             CSSCS-SCEEEEEEEEECGGGTSCEEEEECCCEECE
T ss_pred             eeccC-CCeEEEEEEecCcccCCCCccccccCEEEe
Confidence            44554 5 99999999873   22 44455555554

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.14  E-value=1.7e-10  Score=84.66  Aligned_cols=81  Identities=12%  Similarity=0.066  Sum_probs=58.6

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee------eecCCceEEEc-cCCeEEEeecCcCCCCcceEE
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM------TESTDGKYLVL-PSGELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~------~~~~~~r~~~~-~~g~L~I~~v~~~D~~G~Y~C  146 (167)
                      ...+.+|++|+|+|.+.   + |.+.|.|+|++ ..+....      .+.-.+|+.+. .+|.|.|++++.+|+ |.|.|
T Consensus         4 ~v~~~~G~~VtL~c~~~---~-~~~~i~W~~~~-~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~Ds-G~Y~C   77 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSN---V-PLKEVLWKKQK-DKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDE-DEYEM   77 (171)
T ss_dssp             EEEEETTCCEEECCCCS---S-CCSCEEEEETT-EEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGC-EEEEE
T ss_pred             EEEEEcCCCEEEcCCCC---C-CcceEEEEeCC-cEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhC-ceEEE
Confidence            35678999999999983   2 78899999987 3442211      00113466554 678999999999999 99999


Q ss_pred             EeeecC-cceEEEee
Q psy12724        147 RTKHRL-TGETRLSA  160 (167)
Q Consensus       147 ~a~n~~-~~~~~l~~  160 (167)
                      .|.|.. .....|.+
T Consensus        78 ~~~n~~~~~~~~L~V   92 (171)
T 1ccz_A           78 ESPNITDTMKFFLYV   92 (171)
T ss_dssp             ECTTCCSCEEEEEEE
T ss_pred             EEeCCCCcEEEEEEE
Confidence            998875 34445555

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.14  E-value=9.7e-11  Score=87.62  Aligned_cols=73  Identities=16%  Similarity=0.291  Sum_probs=55.0

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+....  ..........++.|.|.+++.+|+ |.|+|.|.|..
T Consensus        27 ~~~~v~~G~~v~L~C~~~~---~p~~~v~W~~~~-~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~~~n~~   99 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGG---NPMPTMRWLKNG-KEFKQEH--RIGGYKVRNQHWSLIMESVVPSDK-GNYTCVVENEY   99 (231)
T ss_dssp             SCEEEETTSCEEEECCEEE---ESCCEEEEEETT-EECCGGG--STTCCEEEGGGTEEEECSCCGGGC-EEEEEEEEETT
T ss_pred             eeEEEccCCCEEEEEeccc---CCCCeEEEEECC-ccccccc--cccceeeecCcceEEEecCCcccC-EEEEEEEeccc
Confidence            4567889999999999974   488899999997 4553210  011113334456899999999999 99999999976

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.14  E-value=7.6e-11  Score=87.29  Aligned_cols=65  Identities=12%  Similarity=0.127  Sum_probs=49.6

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE--ccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV--LPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~--~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+.+|++++|.|.+.+    |.+.+.|+|++. .+..      ..+...  ..++.|.|.+++.+|+ |.|+|.|.|..
T Consensus        15 ~v~~G~~v~L~C~~~~----~~~~~~w~k~g~-~~~~------~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~n~~   81 (196)
T 3p2t_A           15 VISWGNSVTIWCQGTL----EAREYRLDKEES-PAPW------DRQNPLEPKNKARFSIPSMTEDYA-GRYRCYYRSPV   81 (196)
T ss_dssp             EEETTCCEEEEEECCT----TCCEEEEEETTS-CSCS------EEECCCSSSSEEEEEESSCCGGGC-EEEEEEEEETT
T ss_pred             cCCCCCcEEEEeeCCC----CCCEEEEEECCC-CCcc------cccccccCCceEEEEeccCCcccC-ceEEEEEeCCC
Confidence            7889999999999974    567889999984 4421      111111  2346899999999999 99999999975

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=99.13  E-value=2.5e-10  Score=79.79  Aligned_cols=88  Identities=22%  Similarity=0.325  Sum_probs=59.4

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCee----eEEe-------------------eeecCCceEEEcc--CC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEE----LFVD-------------------MTESTDGKYLVLP--SG  128 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~----l~~~-------------------~~~~~~~r~~~~~--~g  128 (167)
                      ...+.+|++|+|+|.+......+.+.+.|+|++...    +...                   ..+.-.+|+.+..  ++
T Consensus        13 ~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~   92 (135)
T 1xt5_A           13 EVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAP   92 (135)
T ss_dssp             EEEEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEESCTTSC
T ss_pred             eEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEEecCCCC
Confidence            457889999999999742113477889999975321    1110                   0001126776654  36


Q ss_pred             eEEEeecCcCCCCcceEEEeeecC--------cceEEEeeeC
Q psy12724        129 ELHIRDVGPEDGYKSYQCRTKHRL--------TGETRLSATK  162 (167)
Q Consensus       129 ~L~I~~v~~~D~~G~Y~C~a~n~~--------~~~~~l~~~~  162 (167)
                      .|.|++++.+|+ |.|.|.+.|..        ...+.|.+++
T Consensus        93 sL~I~~v~~~D~-G~Y~C~v~~~~~~~~~g~~~~~~~L~V~g  133 (135)
T 1xt5_A           93 TLRLTHVHPQDG-GRYWCQVAQWSIRTEFGLDAKSVVLKVTG  133 (135)
T ss_dssp             CEEECSCCGGGC-EEEEEEEECSSCCSGGGEEEEEEEEEEET
T ss_pred             eEEECCCChhhC-cEEEEEEEcCCccccccccceeEEEEEec
Confidence            899999999999 99999999853        2456666654

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=99.13  E-value=2.4e-10  Score=76.83  Aligned_cols=77  Identities=19%  Similarity=0.251  Sum_probs=50.9

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCe-----eeEEee-----eecCCceEEEccC-----CeEEEeecCcCC
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGE-----ELFVDM-----TESTDGKYLVLPS-----GELHIRDVGPED  139 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~-----~l~~~~-----~~~~~~r~~~~~~-----g~L~I~~v~~~D  139 (167)
                      ..+.+|++|.|+|.+.+........+.|+|++..     .+.-..     .....+|+.+..+     ..|.|++++.+|
T Consensus         4 v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D   83 (109)
T 2oyp_A            4 YKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDD   83 (109)
T ss_dssp             EEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCGGG
T ss_pred             EEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCChh
Confidence            4678899999999986421111235899996521     111000     0012456766432     579999999999


Q ss_pred             CCcceEEEeeecC
Q psy12724        140 GYKSYQCRTKHRL  152 (167)
Q Consensus       140 ~~G~Y~C~a~n~~  152 (167)
                      + |.|.|.+.|..
T Consensus        84 ~-G~Y~C~v~~~~   95 (109)
T 2oyp_A           84 H-GTYCCRIQFPG   95 (109)
T ss_dssp             C-EEEEEEECCSS
T ss_pred             C-eEEEEEEEcCC
Confidence            9 99999999865

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.12  E-value=2.8e-10  Score=85.54  Aligned_cols=75  Identities=17%  Similarity=0.284  Sum_probs=57.3

Q ss_pred             EEEecCeEEEeCCcEEEEeeeCCccCCccee-EEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEE
Q psy12724         69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAV-ESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        69 ~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~-i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~  147 (167)
                      ...+.+..+.+|+++.|.|.+.+   .|.|. ++|+||+ ..+.       ..      ++.|.|.+++.+|+ |.|+|.
T Consensus        11 ~~~p~~~~v~~G~~v~L~C~~~~---~p~~~~v~W~k~g-~~l~-------~~------~~~L~i~~v~~~D~-G~Y~C~   72 (204)
T 3sgj_C           11 FLEPQWYRVLEKDSVTLKCQGAY---SPEDQSTQWFHNE-SLIS-------SQ------ASSYFIDAATVDDS-GEYRCQ   72 (204)
T ss_dssp             EEESCCSEEETTCCEEEEEECCS---SSSCCCEEEEETT-EEES-------CC------SSEEEESSCCGGGC-EEEEEE
T ss_pred             EEcCCCeEEECCCCEEEEEcCCC---CCCCcEEEEEECC-EEcc-------cC------ccEEEEecccccCC-EEEEEE
Confidence            33445568899999999999984   46665 9999997 4442       11      27899999999999 999999


Q ss_pred             eeecC-cceEEEeee
Q psy12724        148 TKHRL-TGETRLSAT  161 (167)
Q Consensus       148 a~n~~-~~~~~l~~~  161 (167)
                      |.|.. +..+.|.+.
T Consensus        73 a~n~~~s~~~~l~V~   87 (204)
T 3sgj_C           73 TQLSTLSDPVQLEVH   87 (204)
T ss_dssp             ETTSBCCCCEEEEEE
T ss_pred             eCCCcccccEEEEEe
Confidence            99865 455555553

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.12  E-value=7.6e-12  Score=94.58  Aligned_cols=133  Identities=13%  Similarity=0.192  Sum_probs=78.5

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCcee-e-------ecCCc----eE--------EEeeeEEEe
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQY-Q-------IDNQD----FV--------VSQSYTVNI   72 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~-~-------~~~~~----~v--------~~g~y~c~~   72 (167)
                      +...|....+.+|+++.|.|.+.+.+...-+.|+| ++....- .       .++..    .+        ..|.|.|.+
T Consensus         7 ~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~~   85 (214)
T 1ow0_A            7 SLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTA   85 (214)
T ss_dssp             EEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEE
T ss_pred             EEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEEE
Confidence            34456677788999999999998875410136999 4421110 0       01110    01        158999987


Q ss_pred             cCe---------------------EE--------EeCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEeeeecCCceE
Q psy12724         73 MDE---------------------HV--------LKGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVDMTESTDGKY  122 (167)
Q Consensus        73 ~~~---------------------~v--------~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~~~~~~~r~  122 (167)
                      .+.                     .+        ..|+++.|.|.+.++  .|. +.|+|+||+ ..+....  ....++
T Consensus        86 ~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~--~P~~~~v~W~k~g-~~l~~~~--~~~~~~  160 (214)
T 1ow0_A           86 AYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGF--SPKDVLVRWLQGS-QELPREK--YLTWAS  160 (214)
T ss_dssp             CCSSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEE--SSSCCEEEEEETT-EECCGGG--SEECCC
T ss_pred             ecCCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeee--ECCCcEEEEEECC-EECCCCc--eeecCC
Confidence            430                     01        147779999999763  243 589999997 4543110  000112


Q ss_pred             EEc---cCCeEEE------eecCcCCCCcceEEEeeecC
Q psy12724        123 LVL---PSGELHI------RDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       123 ~~~---~~g~L~I------~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ...   .+|.+.|      ......|. |.|+|.|.|..
T Consensus       161 ~~~~~~~dgt~~~~s~l~v~~~~~~~~-~~ytC~v~n~~  198 (214)
T 1ow0_A          161 RQEPSQGTTTFAVTSILRVAAEDWKKG-DTFSCMVGHEA  198 (214)
T ss_dssp             EECSCSSSCCEEEEEEEEEEHHHHHHT-CCEEEEEECTT
T ss_pred             cccccCCCCcEEEEEEEEECHHHccCC-CEEEEEEECCC
Confidence            233   4554444      44444557 99999999986

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.12  E-value=4.6e-10  Score=83.02  Aligned_cols=80  Identities=15%  Similarity=0.218  Sum_probs=59.4

Q ss_pred             EEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCe----eeEEee--------eecCCceEEEccCCeEEEeecC
Q psy12724         69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGE----ELFVDM--------TESTDGKYLVLPSGELHIRDVG  136 (167)
Q Consensus        69 ~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~----~l~~~~--------~~~~~~r~~~~~~g~L~I~~v~  136 (167)
                      +..+....+.+|+++.|.|.+.   +.|.+.++|+|++..    .+....        .+...+|+.+..++.|.|.+++
T Consensus         3 ~i~~~~~~v~~G~~v~L~C~~~---~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~   79 (208)
T 3r4d_A            3 TIEAVPPQVAEDNNVLLLVHNL---PLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMIT   79 (208)
T ss_dssp             EEEEESSEEETTCCEEEEEECC---CSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCC
T ss_pred             cccCccceeecCCcEEEEEeCC---CCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEcccc
Confidence            3445567889999999999975   457889999997521    111100        0012467888888999999999


Q ss_pred             cCCCCcceEEEeeecC
Q psy12724        137 PEDGYKSYQCRTKHRL  152 (167)
Q Consensus       137 ~~D~~G~Y~C~a~n~~  152 (167)
                      .+|+ |.|+|.+.|..
T Consensus        80 ~~D~-G~Y~C~~~~~~   94 (208)
T 3r4d_A           80 MKDM-GVYTLDMTDEN   94 (208)
T ss_dssp             GGGC-EEEEEEEECSS
T ss_pred             ccCC-eEEEEEEEccc
Confidence            9999 99999999984

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=99.12  E-value=2.5e-10  Score=77.75  Aligned_cols=75  Identities=17%  Similarity=0.352  Sum_probs=53.0

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEee---eecCCceEEEcc---CCeEEEeecCcCCCCc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDM---TESTDGKYLVLP---SGELHIRDVGPEDGYK  142 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~---~~~~~~r~~~~~---~g~L~I~~v~~~D~~G  142 (167)
                      .+..+.+|++|+|+|.+.+   .|.+.+.|+|++ +..   +....   .+...+|+.+..   +..|.|++++.+|+ |
T Consensus        11 ~~~~v~~G~~v~L~C~~~~---~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds-G   86 (109)
T 2q20_A           11 SSLSASVGDRVTITCQASQ---DISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDI-A   86 (109)
T ss_dssp             SEEEECTTCCEEEEEEESS---CCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-E
T ss_pred             CEEEecCCCcEEEEEeecc---CCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccCCEEEEEECCCChhhC-E
Confidence            4567889999999999974   356789999864 111   11100   001245776643   23799999999999 9


Q ss_pred             ceEEEeeec
Q psy12724        143 SYQCRTKHR  151 (167)
Q Consensus       143 ~Y~C~a~n~  151 (167)
                      .|.|.+.|.
T Consensus        87 ~Y~C~~~~~   95 (109)
T 2q20_A           87 TYYCQQYDN   95 (109)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEEeeC
Confidence            999999985

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.12  E-value=1.2e-10  Score=86.33  Aligned_cols=77  Identities=13%  Similarity=0.163  Sum_probs=54.0

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC--
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL--  152 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~--  152 (167)
                      ..+.+|+++.|.|.+.+   .|. .++|+|++ ..+....    ..+.....++.|.|.+++.+|+ |.|+|.|.|..  
T Consensus        14 ~~v~~G~~v~L~C~~~~---~~~-~~~W~k~g-~~~~~~~----~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~n~~g~   83 (196)
T 2d3v_A           14 SVISRGNSVTIRCQGTL---EAQ-EYRLVKEG-SPEPWDT----QNPLEPKNKARFSIPSMTEHHA-GRYRCYYYSPAGW   83 (196)
T ss_dssp             SEEETTCCEEEEEECCT---TCC-EEEEEETT-CSSCSEE----ECCCSSTTEEEEEESSCCGGGC-EEEEEEEEETTEE
T ss_pred             CcccCCCeEEEEEeCCC---CCc-EEEEEECC-CCCCccc----ccccCCccccEEEeccCChhHC-eEEEEEEeCCCCc
Confidence            47889999999999974   354 88999998 3442110    0111122356899999999999 99999999864  


Q ss_pred             ---cceEEEeee
Q psy12724        153 ---TGETRLSAT  161 (167)
Q Consensus       153 ---~~~~~l~~~  161 (167)
                         +..+.|.+.
T Consensus        84 ~~~s~~~~l~V~   95 (196)
T 2d3v_A           84 SEPSDPLELVVT   95 (196)
T ss_dssp             CBCCCCEEEEEE
T ss_pred             CCcCccEEEEec
Confidence               234555553

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.12  E-value=2.2e-10  Score=84.59  Aligned_cols=76  Identities=14%  Similarity=0.061  Sum_probs=53.5

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC---
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL---  152 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~---  152 (167)
                      .+.+|++++|.|.+.+    +.+.+.|+|++ ..+...    .........++.|.|.+++.+|+ |.|+|.|.|..   
T Consensus        14 ~v~~G~~v~L~C~~~~----~~~~~~w~k~g-~~~~~~----~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~~~~~~~~~   83 (188)
T 1oll_A           14 MVPKEKQVTICCQGNY----GAVEYQLHFEG-SLFAVD----RPKPPERINKVKFYIPDMNSRMA-GQYSCIYRVGELWS   83 (188)
T ss_dssp             EEETTCCEEEEEECCT----TCCEEEEEETT-EEEEEE----CCSSCTTCCEEEEEESSCCGGGC-EEEEEEEEETTEEC
T ss_pred             cCCCCCCEEEEEecCC----CCCEEEEEECC-Cccccc----ccccCCCcceeEEEeCcCCcccC-eEEEEEecCCCCCC
Confidence            7889999999999863    34678999997 454321    11111112356899999999999 99999998853   


Q ss_pred             --cceEEEeee
Q psy12724        153 --TGETRLSAT  161 (167)
Q Consensus       153 --~~~~~l~~~  161 (167)
                        +..+.|.+.
T Consensus        84 ~~s~~~~l~V~   94 (188)
T 1oll_A           84 EPSNLLDLVVT   94 (188)
T ss_dssp             CCCCCEEEEEE
T ss_pred             CCCCceEEEec
Confidence              344555553

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.11  E-value=9.9e-11  Score=88.00  Aligned_cols=69  Identities=9%  Similarity=-0.077  Sum_probs=51.7

Q ss_pred             cCeEEEeC--CcEEEEeeeCCccCCcceeEEEEeC--CCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEe
Q psy12724         73 MDEHVLKG--NSAVLKCHIPSFVADYVAVESWISD--QGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        73 ~~~~v~~G--~~a~l~C~~~~~~~~p~p~i~W~k~--~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      .+..+.+|  +++.|+|.+.+    |.|.++|.|+  ++..+.      .+.++....++.|.|.+++.+|+ |.|+|.|
T Consensus        15 ~~v~v~eG~~~~v~L~C~~~~----p~~~v~w~~~~~~g~~~~------~~~~~~~~~~~~l~I~~v~~~D~-G~Y~C~a   83 (213)
T 2x1w_L           15 GVVYITENKNKTVVIPCLGSI----SNLNVSLCARYPEKRFVP------DGNRISWDSKKGFTIPSYMISYA-GMVFCEA   83 (213)
T ss_dssp             EEEEECCSTTCEEEECCCBSS----TTCCEEEEEETTTEEECC------CSSSCEEETTTEEEEEGGGTTTC-SEEEEEE
T ss_pred             eEEEEecCCCccEEEeeccCC----CCcEEEEEhhcCCCcccc------CCCcccccCCccEEEccCChhcC-ceEEEEE
Confidence            44677889  99999999963    6688999885  433332      23455556678899999999999 9999999


Q ss_pred             eecC
Q psy12724        149 KHRL  152 (167)
Q Consensus       149 ~n~~  152 (167)
                      .|..
T Consensus        84 ~n~~   87 (213)
T 2x1w_L           84 KIND   87 (213)
T ss_dssp             C---
T ss_pred             EECC
Confidence            9854

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=99.11  E-value=2.9e-10  Score=77.30  Aligned_cols=77  Identities=18%  Similarity=0.232  Sum_probs=53.2

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-e--eeEEee----eecCCceEEEccC---CeEEEeecCcCCCC
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-E--ELFVDM----TESTDGKYLVLPS---GELHIRDVGPEDGY  141 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~--~l~~~~----~~~~~~r~~~~~~---g~L~I~~v~~~D~~  141 (167)
                      +.+..+.+|++|+|+|.+.+.   +.+.+.|+|... .  .+.-..    .+...+|+.+..+   ..|.|++++.+|+ 
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~---~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds-   83 (108)
T 1qfw_M            8 PKSMSMSVGERVTLSCKASET---VDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSATDFTLTISSVQAEDF-   83 (108)
T ss_dssp             CSCEECCTTCCEEEEEEESSC---CCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCSSEEEEEESSCCTTCC-
T ss_pred             CCeEEEcCCCCEEEEeeeCCC---CCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCCCEEEEEECCCChhhC-
Confidence            345678899999999999743   567899998541 1  111100    0011457766533   2699999999999 


Q ss_pred             cceEEEeeecC
Q psy12724        142 KSYQCRTKHRL  152 (167)
Q Consensus       142 G~Y~C~a~n~~  152 (167)
                      |.|.|.+.|..
T Consensus        84 G~Y~C~~~~~~   94 (108)
T 1qfw_M           84 ADYHCGQTYNH   94 (108)
T ss_dssp             SEEEEEECSSS
T ss_pred             EEEEEEEccCC
Confidence            99999999863

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=99.11  E-value=3.2e-10  Score=77.13  Aligned_cols=74  Identities=24%  Similarity=0.401  Sum_probs=51.8

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeEEeeeecCCceEEEcc-----CCeEEEeecCcCCCCcceEE
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELFVDMTESTDGKYLVLP-----SGELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~~~~~~~~~~r~~~~~-----~g~L~I~~v~~~D~~G~Y~C  146 (167)
                      .+..+.+|++|+|+|.+.+. ..+.+.+.|+|+. +.......  ...+|+.+..     +..|.|++++.+|+ |.|.|
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~-~~~~~~v~W~r~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds-G~Y~C   83 (108)
T 2coq_A            8 RIATKETGESLTINCVLRDT-ACALDSTNWYRTKLGSTKEQTI--SIGGRYSETVDEGSNSASLTIRDLRVEDS-GTYKC   83 (108)
T ss_dssp             SEEEECTTCCEEEEEEECCS-SEEEEEEEEEEEETTCCCEEEC--CCBTTEEEEEETTTTEEEEEECSCCGGGC-EEEEE
T ss_pred             ceEEEcCCCCEEEEeEeCCC-cCCCCEEEEEEcCCCCCcEEEE--EeCCceEEEEcCCCCEEEEEECCCCcccC-EEEEE
Confidence            44678899999999999743 1146789999863 11111111  1346776531     23799999999999 99999


Q ss_pred             Eeee
Q psy12724        147 RTKH  150 (167)
Q Consensus       147 ~a~n  150 (167)
                      .+.|
T Consensus        84 ~~~~   87 (108)
T 2coq_A           84 KAYR   87 (108)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9998

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.11  E-value=3.6e-10  Score=82.27  Aligned_cols=74  Identities=18%  Similarity=0.257  Sum_probs=56.3

Q ss_pred             EEecCeEEEeCCcEEEEeeeCCccCCccee-EEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEe
Q psy12724         70 VNIMDEHVLKGNSAVLKCHIPSFVADYVAV-ESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        70 c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~-i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      ..+.+..+.+|+++.|.|.+.+.   |.|. ++|+|++ ..+.             ..++.|.|.+++.+|+ |.|+|.|
T Consensus        12 ~~p~~~~v~~G~~v~L~C~~~~~---p~~~~~~W~~~~-~~~~-------------~~~~~L~i~~~~~~d~-G~Y~C~~   73 (175)
T 1fnl_A           12 LEPQWYSVLEKDSVTLKCQGAYS---PEDNSTQWFHNE-SLIS-------------SQASSYFIDAATVNDS-GEYRCQT   73 (175)
T ss_dssp             EESCCSEEETTCCEEEEEECCCB---TTBCCCEEEETT-EEEE-------------SSCSEEEESSCCGGGC-EEEEEEC
T ss_pred             EcCCceeeeCCCcEEEEeeCCCC---CCCcceEEEECC-EEcc-------------CCceEEEEeCCCcccC-EEEEEEe
Confidence            33445578999999999999853   6555 7899997 4442             1357899999999999 9999999


Q ss_pred             eecC-cceEEEeee
Q psy12724        149 KHRL-TGETRLSAT  161 (167)
Q Consensus       149 ~n~~-~~~~~l~~~  161 (167)
                      .|.. +..+.|.+.
T Consensus        74 ~n~~~s~~~~l~V~   87 (175)
T 1fnl_A           74 NLSTLSDPVQLEVH   87 (175)
T ss_dssp             SSSCCCCCEEEEEE
T ss_pred             eCCcccccEEEEEe
Confidence            9865 445555554

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.10  E-value=4e-10  Score=83.37  Aligned_cols=84  Identities=14%  Similarity=0.224  Sum_probs=58.7

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-------e-ecCCceEEE-ccCCeEEEeecCcCCCCcce
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-------T-ESTDGKYLV-LPSGELHIRDVGPEDGYKSY  144 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-------~-~~~~~r~~~-~~~g~L~I~~v~~~D~~G~Y  144 (167)
                      +..+.+|++|+|+|.+.+  ..+.+.|.|+|++...+....       . +.-.+|+.+ ..+|.|.|++++.+|+ |.|
T Consensus         8 ~v~v~~G~~vtL~c~~~~--~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~-G~Y   84 (180)
T 2dru_A            8 NVNAITGSNVTLTILKHP--LASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDR-GDY   84 (180)
T ss_dssp             EEEEETTSCEEECCCSSC--CCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGC-EEE
T ss_pred             eEEEEeCCCEEEeCCCCC--CCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHC-eEE
Confidence            357889999999999843  235789999995323332110       0 011268887 6788999999999999 999


Q ss_pred             EEEeeecC--cceEEEee
Q psy12724        145 QCRTKHRL--TGETRLSA  160 (167)
Q Consensus       145 ~C~a~n~~--~~~~~l~~  160 (167)
                      +|.+.+..  .....|.+
T Consensus        85 ~C~v~~~~~~~~~~~L~V  102 (180)
T 2dru_A           85 YMRMLHETEDQWKITMEV  102 (180)
T ss_dssp             EEEEESSSEEEEEEEEEE
T ss_pred             EEEEEcCCeEEEEEEEEE
Confidence            99987764  33445555

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=99.10  E-value=3.9e-10  Score=76.96  Aligned_cols=78  Identities=15%  Similarity=0.255  Sum_probs=53.3

Q ss_pred             CeEEEeCCcEEEEeeeCCccC-CcceeEEEEeCCC------eeeEEee--------eecCCceEEEccC------CeEEE
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVA-DYVAVESWISDQG------EELFVDM--------TESTDGKYLVLPS------GELHI  132 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~-~p~p~i~W~k~~~------~~l~~~~--------~~~~~~r~~~~~~------g~L~I  132 (167)
                      ...+.+|+++.|+|.+.+... ...+.+.|+|++.      ..+....        .....+|+.+..+      +.|.|
T Consensus        14 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I   93 (126)
T 1eaj_A           14 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   93 (126)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccCCeEEEEE
Confidence            356789999999999864311 1125699998752      1221110        0112467776654      68999


Q ss_pred             eecCcCCCCcceEEEeeecC
Q psy12724        133 RDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       133 ~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++++.+|+ |.|.|.+.|..
T Consensus        94 ~~v~~~D~-G~Y~C~v~~~~  112 (126)
T 1eaj_A           94 TNLQLSDI-GTYQCKVKKAP  112 (126)
T ss_dssp             CSCCGGGC-EEEEEEEEETT
T ss_pred             CcCChHHC-eEEEEEEEcCC
Confidence            99999999 99999999975

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.10  E-value=3e-10  Score=88.88  Aligned_cols=131  Identities=18%  Similarity=0.243  Sum_probs=72.7

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Ccee--e--e------------cCCc------------eE-
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQY--Q--I------------DNQD------------FV-   63 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~~--~--~------------~~~~------------~v-   63 (167)
                      ..++..+.+.+|+++.|.|.+.+.+.. .+.+.|+|.+ ++.+  .  .            ...|            .+ 
T Consensus         4 l~qp~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   82 (257)
T 3bn9_D            4 LVQSGGGLVKPGGSLRLSCAASGFTFS-SYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQ   82 (257)
T ss_dssp             EEEECCEEECTTCEEEEEEEEESSCGG-GCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             EEccCCEEEcCCCcEEEEEEeccccCC-CceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEE
Confidence            346777899999999999999876421 2469998864 2111  0  0            0011            11 


Q ss_pred             -------EEeeeEEEecCe-----------------------E-------------------EEeCCcEEEEeeeCCccC
Q psy12724         64 -------VSQSYTVNIMDE-----------------------H-------------------VLKGNSAVLKCHIPSFVA   94 (167)
Q Consensus        64 -------~~g~y~c~~~~~-----------------------~-------------------v~~G~~a~l~C~~~~~~~   94 (167)
                             .+|.|.|.+.+.                       .                   +..|+++.|.|.+.+.  
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~--  160 (257)
T 3bn9_D           83 MSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDY--  160 (257)
T ss_dssp             EESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEE--
T ss_pred             ECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeE--
Confidence                   169999986421                       0                   1257889999999753  


Q ss_pred             Ccce-eEEEEeCCCeeeE-Eee--eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         95 DYVA-VESWISDQGEELF-VDM--TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        95 ~p~p-~i~W~k~~~~~l~-~~~--~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .|.| .++|+|++. .+. ...  ....+++|.+  .+.|.|.++..+|  |.|+|.|.|..
T Consensus       161 ~P~pi~v~W~k~g~-~~~~~~~~~~~~~~g~y~~--~s~L~I~~~~~~~--g~YtC~v~n~~  217 (257)
T 3bn9_D          161 FPEPVTVSWNSGAL-TSGVHTFPAVLQSSGLYSL--SSVVTVPSSSLGT--QTYICNVNHKP  217 (257)
T ss_dssp             BSSCCEEEETTTTC-CSSCEECCCEECTTSCEEE--EEECCCC---------CEEEEEEEGG
T ss_pred             ECCCcEEEEeeCCC-cCCcEecCCeEcCCCCEEE--EEEEEEcccccCC--CeEEEEEEecC
Confidence            3666 899999873 321 000  0012344443  2468898888765  99999999976

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=99.10  E-value=3.9e-10  Score=78.39  Aligned_cols=86  Identities=16%  Similarity=0.326  Sum_probs=58.6

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ce-e--eEEe---eeecCCceEEEcc---CCeEEEeecCcCCCCc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GE-E--LFVD---MTESTDGKYLVLP---SGELHIRDVGPEDGYK  142 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~-~--l~~~---~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G  142 (167)
                      .+..+.+|++|+|+|.+.+.   +.+.+.|+|.. +. +  +...   ..+...+|+.+..   +..|.|++++.+|+ |
T Consensus        11 ~~v~v~~G~~vtL~C~~~~~---~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds-G   86 (119)
T 2e27_L           11 SSLSASLGGKVTITCKANQD---IKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSGRDYSFSISNLEPEDA-A   86 (119)
T ss_dssp             SEEEEETTCCEEEEEEESSC---CTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGC-E
T ss_pred             CeEEEeCCCCEEEEEEeCCC---CCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccCCEEEEEECCCChHHC-E
Confidence            45678899999999999743   56789999853 11 1  1110   0001245776643   23799999999999 9


Q ss_pred             ceEEEeeecC----cceEEEeeeC
Q psy12724        143 SYQCRTKHRL----TGETRLSATK  162 (167)
Q Consensus       143 ~Y~C~a~n~~----~~~~~l~~~~  162 (167)
                      .|.|.+.|..    ..-++|.+.+
T Consensus        87 ~Y~C~~~~~~~~~fg~GT~l~v~~  110 (119)
T 2e27_L           87 TYYCLQYDNFTWTFGGGTKLEIKR  110 (119)
T ss_dssp             EEEEEECGGGCCEECCCEEEEEEC
T ss_pred             EEEEEEccCCceEECCCEEEEEeC
Confidence            9999999853    4455666644

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.10  E-value=3.9e-10  Score=84.58  Aligned_cols=78  Identities=17%  Similarity=0.340  Sum_probs=54.6

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeEE--ee---------eecCCceEEEcc-----CCeEEEeec
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELFV--DM---------TESTDGKYLVLP-----SGELHIRDV  135 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~~--~~---------~~~~~~r~~~~~-----~g~L~I~~v  135 (167)
                      .+..+.+|++|.|.|.+.+. ..+.+.+.|+|++ +..+..  ..         .+...+|+.+..     ++.|.|+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~-~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (219)
T 1c1e_H            8 GPELKKPGETVKISCKASGY-MFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNL   86 (219)
T ss_dssp             CCEEECTTCCEEEEEEEESS-CGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSC
T ss_pred             CCeEecCCCcEEEEEEEeCc-ccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCC
Confidence            45678899999999999753 1136889999973 222210  00         001246777653     258999999


Q ss_pred             CcCCCCcceEEEeeecC
Q psy12724        136 GPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n~~  152 (167)
                      +.+|+ |.|.|.|.|..
T Consensus        87 ~~~D~-G~Y~C~~~~~~  102 (219)
T 1c1e_H           87 KNEDM-ATYFCARGTTI  102 (219)
T ss_dssp             CGGGC-EEEEEEEEETT
T ss_pred             CcccC-EEEEEEEeccC
Confidence            99999 99999999964

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.10  E-value=3.4e-10  Score=83.28  Aligned_cols=67  Identities=16%  Similarity=0.167  Sum_probs=52.8

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC--
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL--  152 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~--  152 (167)
                      ..+.+|++++|.|.+.+    |.+.++|+|++. .             ....++.|.|.+++.+|+ |.|+|.|.|..  
T Consensus        17 ~~v~~G~~v~L~C~~~~----~~~~~~W~k~g~-~-------------~~~~~~~L~i~~v~~~D~-G~Y~C~a~n~~g~   77 (184)
T 2gi7_A           17 SLVPLEKPVTLRCQGPP----GVDLYRLEKLSS-S-------------RYQDQAVLFIPAMKRSLA-GRYRCSYQNGSLW   77 (184)
T ss_dssp             SEEETTCCEEEEEECST----TCSEEEEEETTT-C-------------CEESSSEEEESSCCGGGC-EEEEEEEEETTEE
T ss_pred             ccccCCCcEEEEEeCCC----CCCEEEEEECCc-c-------------ccCcccEEEECcCChhhC-ceEEEEEEcCCCc
Confidence            47889999999999863    667899999974 2             113467899999999999 99999999954  


Q ss_pred             ---cceEEEee
Q psy12724        153 ---TGETRLSA  160 (167)
Q Consensus       153 ---~~~~~l~~  160 (167)
                         +..+.|.+
T Consensus        78 ~~~s~~~~l~V   88 (184)
T 2gi7_A           78 SLPSDQLELVA   88 (184)
T ss_dssp             BCCCCCEEEEE
T ss_pred             cCCCCCEEEEe
Confidence               33455555

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.10  E-value=5.3e-10  Score=84.20  Aligned_cols=129  Identities=16%  Similarity=0.234  Sum_probs=77.8

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cce---ee-ec-----------CCc------------eE---
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GGQ---YQ-ID-----------NQD------------FV---   63 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~~---~~-~~-----------~~~------------~v---   63 (167)
                      .+|.++.+.+|+++.|.|.+.+.+.+ .+.+.|+|++ +..   +. ..           ..|            .+   
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   83 (215)
T 1c5d_H            5 LESGPGLVQPSQTLSLTCTVSGFPLT-TNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMN   83 (215)
T ss_dssp             EEECCCEECTTCCEEEEEEECSSCTT-SCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEES
T ss_pred             EcCCCeeecCCCcEEEEEEECCCcCC-CCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEEC
Confidence            45778899999999999999876522 2579999863 211   10 00           001            11   


Q ss_pred             -----EEeeeEEEecCe-------------E-------------------EEeCCcEEEEeeeCCccCCcce-eEEEEeC
Q psy12724         64 -----VSQSYTVNIMDE-------------H-------------------VLKGNSAVLKCHIPSFVADYVA-VESWISD  105 (167)
Q Consensus        64 -----~~g~y~c~~~~~-------------~-------------------v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~  105 (167)
                           .+|.|.|.+.+.             .                   +.+|+.+.|.|.+.+.  .|.| .++|+|+
T Consensus        84 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~--~P~p~~v~W~~~  161 (215)
T 1c5d_H           84 SLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGY--FPEPVTVTWNSG  161 (215)
T ss_dssp             SCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEE--BSSCCEEEEGGG
T ss_pred             CCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeee--EcCCcEEEEccC
Confidence                 169999987431             0                   1258899999999753  3777 8999998


Q ss_pred             CCeeeEEeeee--cCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCc
Q psy12724        106 QGEELFVDMTE--STDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT  153 (167)
Q Consensus       106 ~~~~l~~~~~~--~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~  153 (167)
                      +. .+......  ..++.|.+.  ..|.  . ...|. |.|+|.|.|...
T Consensus       162 g~-~~~~~~~~~~~~~g~~~~~--s~L~--~-~~~~~-g~ytC~v~n~~~  204 (215)
T 1c5d_H          162 AL-SSDVHTFPAVLQSGLYTLT--SSVT--S-STWPS-QTVTCNVAHPAS  204 (215)
T ss_dssp             TT-CCSCCBCCCEEETTEEEEE--EEEE--E-SSTTT-SCCEEEEEEGGG
T ss_pred             Cc-cCceEecCcccCCCCEEEE--EEEe--c-ccCCC-CeEEEEEEeCCC
Confidence            73 32100000  001333321  1233  2 33356 999999999873

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=99.10  E-value=2.5e-10  Score=79.50  Aligned_cols=86  Identities=21%  Similarity=0.336  Sum_probs=54.6

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCee---eEEeee--------ecCCceEEEcc------CCeEEEeecC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEE---LFVDMT--------ESTDGKYLVLP------SGELHIRDVG  136 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~---l~~~~~--------~~~~~r~~~~~------~g~L~I~~v~  136 (167)
                      ...+.+|++|+|+|.+.+......+.+.|+|.+...   ......        +.-.+|+.+..      +.+|.|+|++
T Consensus         9 ~vtv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~   88 (123)
T 4gjt_B            9 VVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAV   88 (123)
T ss_dssp             EEECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEESCC
T ss_pred             EEEEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEECCCC
Confidence            356789999999999864322334568999864211   110000        01124555432      2469999999


Q ss_pred             cCCCCcceEEEeeec-C---cceEEEee
Q psy12724        137 PEDGYKSYQCRTKHR-L---TGETRLSA  160 (167)
Q Consensus       137 ~~D~~G~Y~C~a~n~-~---~~~~~l~~  160 (167)
                      .+|+ |.|.|.+.+. .   .+.+.|+|
T Consensus        89 ~~Ds-G~Y~C~v~t~~~g~~~~~~~L~V  115 (123)
T 4gjt_B           89 QADE-GEYECRVSTFPAGSFQARLRLRV  115 (123)
T ss_dssp             SSSC-SEEEEEEEESSSCEEEEEEEEEC
T ss_pred             hHHC-EEEEEEEEECCCCeEEeEEEEEE
Confidence            9999 9999988763 2   44566665

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.09  E-value=2.1e-10  Score=85.48  Aligned_cols=77  Identities=22%  Similarity=0.296  Sum_probs=54.6

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-eeeE--Ee----eeecCCceEEEccCC---eEEEeecCcCCCC
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-EELF--VD----MTESTDGKYLVLPSG---ELHIRDVGPEDGY  141 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~~l~--~~----~~~~~~~r~~~~~~g---~L~I~~v~~~D~~  141 (167)
                      +.+..+.+|+++.|.|.+.+   .|.|.++|+|++. ..+.  ..    ......+|+.+..++   .|.|.+++.+|+ 
T Consensus         8 p~~~~v~~G~~v~L~C~~~~---~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~-   83 (213)
T 3d9a_L            8 PATLSVTPGNSVSLSCRASQ---SIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF-   83 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESS---CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC-
T ss_pred             CccEEEeCCCcEEEEEECCC---CCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhC-
Confidence            34567889999999999984   4778899998531 2110  00    000113577665433   799999999999 


Q ss_pred             cceEEEeeecC
Q psy12724        142 KSYQCRTKHRL  152 (167)
Q Consensus       142 G~Y~C~a~n~~  152 (167)
                      |.|+|.|.|..
T Consensus        84 G~Y~C~~~~~~   94 (213)
T 3d9a_L           84 GMYFCQQSNSW   94 (213)
T ss_dssp             EEEEEEECSSS
T ss_pred             EEEEEeeecCC
Confidence            99999999975

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.09  E-value=2.4e-10  Score=85.27  Aligned_cols=76  Identities=22%  Similarity=0.405  Sum_probs=55.9

Q ss_pred             EEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeE----EEeecCcCCCCcce
Q psy12724         69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGEL----HIRDVGPEDGYKSY  144 (167)
Q Consensus        69 ~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L----~I~~v~~~D~~G~Y  144 (167)
                      .-.+.+..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+...   ..........+|.+    .|.+++.+|+ |.|
T Consensus        13 ~~~p~~~~v~~G~~v~L~C~~~g---~p~~~v~W~~~g-~~~~~~---~~~~~~~~~~~~~~~~~l~i~~v~~~d~-G~Y   84 (217)
T 2vr9_A           13 IEHPTDLVVKKNEPATLNCKVEG---KPEPTIEWFKDG-EPVSTN---EKKSHRVQFKDGALFFYRTMQGKKEQDG-GEY   84 (217)
T ss_dssp             EECCCCEEECTTSCEEECCEEEC---SSCCEEEEEETT-EECCCS---SSSSSEEECTTSCEEESSCCBSSSCBCC-EEE
T ss_pred             ecCCCceEEeCCCcEEEEEEcCC---CCCCeEEEEECC-cCccCC---CccceeEEecCCceEEEEEeccCCcccC-ceE
Confidence            33455678889999999999974   588899999997 455321   01122334455655    6889999999 999


Q ss_pred             EEEeeecC
Q psy12724        145 QCRTKHRL  152 (167)
Q Consensus       145 ~C~a~n~~  152 (167)
                      +|.|.|..
T Consensus        85 ~C~~~n~~   92 (217)
T 2vr9_A           85 WCVAKNRV   92 (217)
T ss_dssp             EEEEEETT
T ss_pred             EEEEecCC
Confidence            99999976

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.09  E-value=2.2e-10  Score=86.60  Aligned_cols=72  Identities=19%  Similarity=0.318  Sum_probs=54.4

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ...+.+|+++.|.|.+.+   .|.|.++|+|++ ..+....  ..........++.|.|.+++.+|+ |.|+|.|.|..
T Consensus        24 ~~~v~~G~~v~L~C~~~~---~p~~~v~W~~~~-~~~~~~~--~~~~~~~~~~~~~L~i~~v~~~d~-G~Y~C~~~~~~   95 (241)
T 3grw_A           24 LLAVPAANTVRFRCPAAG---NPTPSISWLKNG-REFRGEH--RIGGIKLRHQQWSLVMESVVPSDR-GNYTCVVENKF   95 (241)
T ss_dssp             EEEEETTSEEEEECCEEC---SSCCEEEEEETT-EECCGGG--STTCCEEEGGGTEEEECSCCGGGC-EEEEEEEEETT
T ss_pred             ceEEcCCCeEEEEEEecC---CCCceeEEEECC-cccCCCC--cccceeeeccceEEEEEeCCcccC-EEEEEEEeecC
Confidence            357789999999999974   588899999997 4553210  011223344567899999999999 99999999976

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.09  E-value=6.9e-10  Score=82.01  Aligned_cols=78  Identities=17%  Similarity=0.265  Sum_probs=51.2

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee---------eecCCceEEEc----------cCCeEEEee
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM---------TESTDGKYLVL----------PSGELHIRD  134 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~---------~~~~~~r~~~~----------~~g~L~I~~  134 (167)
                      +..+.+|++|.|+|.+.+....+...|+|+|+++..+....         .....+|....          .++.|.|++
T Consensus        10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   89 (225)
T 4fmk_A           10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG   89 (225)
T ss_dssp             EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred             EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence            45678999999999997531111235899998753332110         00011222221          245799999


Q ss_pred             cCcCCCCcceEEEeeecC
Q psy12724        135 VGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       135 v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++.+|+ |.|.|.|.|..
T Consensus        90 v~~~D~-G~Y~C~~~~~~  106 (225)
T 4fmk_A           90 LRVEDE-GNYTCEFATFP  106 (225)
T ss_dssp             CCGGGC-EEEEEEEEEET
T ss_pred             CCHHHC-cceEEEEEeCC
Confidence            999999 99999999875

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.08  E-value=3.1e-10  Score=83.78  Aligned_cols=75  Identities=19%  Similarity=0.199  Sum_probs=56.1

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee------eecCCceEEEccCCeEEEeecCcCCCCcceE
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM------TESTDGKYLVLPSGELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~------~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~  145 (167)
                      +.+..+.+|+++.|.|.+.+   .|.+.++|+|++. .+....      ......|+.+. ++.|.|.+++.+|+ |.|+
T Consensus         8 ~~~~~v~~G~~v~L~C~~~~---~p~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~r~~~~-~~~L~i~~v~~~D~-G~Y~   81 (212)
T 1f97_A            8 QSDVQVPENESIKLTCTYSG---FSSPRVEWKFVQG-STTALVCYNSQITAPYADRVTFS-SSGITFSSVTRKDN-GEYT   81 (212)
T ss_dssp             CSEEEEETTCCEEEECEEES---CSSEEEEEEEEET-TEEEEEEETTEECGGGTTTEEEE-TTEEEESCCCGGGC-EEEE
T ss_pred             CCCeEEEcCCCEEEEeEeCC---CCCcEEEEEECCC-ceeeEEecCCcccccccCcEEee-ceeEEEcccCcccC-eEEE
Confidence            34567889999999999974   4889999999874 321100      01124566554 48999999999999 9999


Q ss_pred             EEeeecC
Q psy12724        146 CRTKHRL  152 (167)
Q Consensus       146 C~a~n~~  152 (167)
                      |.|.|..
T Consensus        82 C~~~~~~   88 (212)
T 1f97_A           82 CMVSEEG   88 (212)
T ss_dssp             EEEEETT
T ss_pred             EEEEccC
Confidence            9999963

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.08  E-value=3e-09  Score=80.11  Aligned_cols=127  Identities=20%  Similarity=0.294  Sum_probs=81.5

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cc---eee---------------ec---CCc-eE-----
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GG---QYQ---------------ID---NQD-FV-----   63 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~---~~~---------------~~---~~~-~v-----   63 (167)
                      .....+.++.+.+|+++.|.|.+.+..    +.+.|+|.+ +.   .+.               .+   ... .+     
T Consensus         3 ~v~q~p~~v~v~~G~~v~L~C~~~~~~----~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v   78 (207)
T 1ypz_E            3 QVEQSPSALSLHEGTDSALRCNFTTTM----RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDA   78 (207)
T ss_dssp             SEEESCSEEEEETTCCEEEEEEESSCC----SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSC
T ss_pred             ccEECCCeEEEccCCcEEEEEEEeCCC----eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCC
Confidence            345567889999999999999998653    259998853 21   110               01   000 11     


Q ss_pred             ---EEeeeEEEecCe---------------------EEE-------------eCCcEEEEeeeCCccCCcc-eeEEEEeC
Q psy12724         64 ---VSQSYTVNIMDE---------------------HVL-------------KGNSAVLKCHIPSFVADYV-AVESWISD  105 (167)
Q Consensus        64 ---~~g~y~c~~~~~---------------------~v~-------------~G~~a~l~C~~~~~~~~p~-p~i~W~k~  105 (167)
                         .+|.|.|.+.+.                     .|.             .+..+.|.|.+.+.  .|. |.++|+|+
T Consensus        79 ~~~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v~~~~~~~~l~C~~~g~--~P~~~~v~W~~~  156 (207)
T 1ypz_E           79 QLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIMKNGTNVACLVKDF--YPKEVTISLRSS  156 (207)
T ss_dssp             CGGGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEEEEEEETTEEEEEEEEE--SSSCCEEEEECS
T ss_pred             CHHHCEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCCeEEEeCCCCeEEEEEeeE--eCCCeEEEEecC
Confidence               179999987432                     111             12236889999754  243 78999998


Q ss_pred             CCeeeEEeeeecCCceEEEccCCeEEEeecCc-CCCCcceEEEeeecC
Q psy12724        106 QGEELFVDMTESTDGKYLVLPSGELHIRDVGP-EDGYKSYQCRTKHRL  152 (167)
Q Consensus       106 ~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~-~D~~G~Y~C~a~n~~  152 (167)
                       . .+..     .........+|.+.+..... .|. |.|+|.+.|..
T Consensus       157 -~-~l~~-----~~~~~~~~~~g~y~~~~~~~~~~~-~~ytC~v~~~~  196 (207)
T 1ypz_E          157 -K-KIVE-----FDPAIVISPSGKYSAVKLGQYGDS-NSVTCSVQHNS  196 (207)
T ss_dssp             -S-EEEE-----CCCEEEECTTSSEEEEECEEESST-TTCEEEEEETT
T ss_pred             -C-cccC-----CccceEEcCCCcEEEEEeecccCC-CcEEEEEEECC
Confidence             4 4432     12333345677777766655 677 99999999986

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=99.08  E-value=4.1e-10  Score=78.28  Aligned_cols=87  Identities=20%  Similarity=0.353  Sum_probs=58.8

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEee---eecCCceEEEcc---CCeEEEeecCcCCCCc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDM---TESTDGKYLVLP---SGELHIRDVGPEDGYK  142 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~---~~~~~~r~~~~~---~g~L~I~~v~~~D~~G  142 (167)
                      .+..+.+|++|+|+|.+.+   .|.+.+.|+|+. +..   +....   .+...+|+.+..   +..|.|++++.+|+ |
T Consensus         9 ~~~~v~~G~~v~L~C~~~~---~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds-G   84 (120)
T 1mqk_L            9 VSLSASVGETVTITCRASE---NIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDF-G   84 (120)
T ss_dssp             SEEEECTTCCEEEEEEESS---CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-E
T ss_pred             CeEEEcCCCcEEEEEEeCC---CCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccCCEEEEEECCCCHHHC-E
Confidence            4567889999999999974   356789999853 111   11100   001246776653   23799999999999 9


Q ss_pred             ceEEEeeecC-----cceEEEeeeCC
Q psy12724        143 SYQCRTKHRL-----TGETRLSATKG  163 (167)
Q Consensus       143 ~Y~C~a~n~~-----~~~~~l~~~~~  163 (167)
                      .|.|.+.|..     ...++|.+.+.
T Consensus        85 ~Y~C~~~~~~~~~~fg~gt~L~V~~~  110 (120)
T 1mqk_L           85 SYYCQHHYGTPPLTFGGGTKLEIKRE  110 (120)
T ss_dssp             EEEEEECSSSSSCCBCCCEEEEEC--
T ss_pred             EEEEEEEeCCCceEECCCeEEEEecC
Confidence            9999999853     45667777543

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=99.08  E-value=3.3e-10  Score=76.89  Aligned_cols=76  Identities=17%  Similarity=0.311  Sum_probs=52.8

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ce-e--eEEee---eecCCceEEEccC---CeEEEeecCcCCCCc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GE-E--LFVDM---TESTDGKYLVLPS---GELHIRDVGPEDGYK  142 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~-~--l~~~~---~~~~~~r~~~~~~---g~L~I~~v~~~D~~G  142 (167)
                      .+..+.+|++|+|+|.+.+   .+.+.+.|+|.. +. +  +....   .+...+|+.+..+   ..|.|++++.+|+ |
T Consensus         9 ~~~~~~~G~~v~L~C~~~~---~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds-G   84 (107)
T 1i8k_A            9 ASLSVATGEKVTIRCMTST---DIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDV-G   84 (107)
T ss_dssp             SEEECCTTCCEEEEEEESS---CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC-E
T ss_pred             CeEEecCCCCEEEEEEECC---CCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccCCEEEEEECCCCHHHC-E
Confidence            4467789999999999974   356789999853 11 1  21100   0012457766532   2699999999999 9


Q ss_pred             ceEEEeeecC
Q psy12724        143 SYQCRTKHRL  152 (167)
Q Consensus       143 ~Y~C~a~n~~  152 (167)
                      .|.|.+.|..
T Consensus        85 ~Y~C~~~~~~   94 (107)
T 1i8k_A           85 DYYCLQSFNV   94 (107)
T ss_dssp             EEEEEECSSS
T ss_pred             EEEEEEeeCC
Confidence            9999999863

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.08  E-value=3.3e-10  Score=98.35  Aligned_cols=84  Identities=29%  Similarity=0.382  Sum_probs=65.0

Q ss_pred             eeEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcc
Q psy12724         67 SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKS  143 (167)
Q Consensus        67 ~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~  143 (167)
                      .+.-...+..+.+|+++.|.|.+.   |.|.|.++|+|++ ..+.      .+.|+.+..++   .|.|.++..+|+ |.
T Consensus       484 ~~~~~~~~~~v~~G~~~~~~~~v~---g~P~P~v~W~k~~-~el~------~s~~~~i~~~~~~~~L~I~~~~~~D~-G~  552 (573)
T 3uto_A          484 RFIVKPYGTEVGEGQSANFYCRVI---ASSPPVVTWHKDD-RELK------QSVKYMKRYNGNDYGLTINRVKGDDK-GE  552 (573)
T ss_dssp             EEEECCCCEEECTTSCEEEEEEEE---CSSCCEEEEEETT-EECC------SSSSEEEEEETTEEEEEECSCCGGGC-EE
T ss_pred             ccccCCCCcEEeCCCcEEEEEEEE---ccCCCeEEEEECC-EEcc------cCCcEEEEEcCCEEEEEEcCCCcccC-cE
Confidence            344445667888999999999997   4599999999997 5663      35677665433   699999999999 99


Q ss_pred             eEEEeeecC---cceEEEeee
Q psy12724        144 YQCRTKHRL---TGETRLSAT  161 (167)
Q Consensus       144 Y~C~a~n~~---~~~~~l~~~  161 (167)
                      |+|.|.|..   ++.+.|.+|
T Consensus       553 Yt~~A~N~~G~~~~~v~l~Vt  573 (573)
T 3uto_A          553 YTVRAKNSYGTKEEIVFLNVT  573 (573)
T ss_dssp             EEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEeCCCcEEEEEEEEEC
Confidence            999999998   334455553

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.07  E-value=4.1e-10  Score=84.97  Aligned_cols=77  Identities=19%  Similarity=0.308  Sum_probs=50.2

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeee----------ecCCceEEEcc------CCeEEEeecCcC
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMT----------ESTDGKYLVLP------SGELHIRDVGPE  138 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~----------~~~~~r~~~~~------~g~L~I~~v~~~  138 (167)
                      ..+.+|++|+|+|.+.+........|+|+|++.......+.          .....|.....      ++.|.|.+++.+
T Consensus        14 V~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~   93 (226)
T 4f80_A           14 ILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTAS   93 (226)
T ss_dssp             EEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCGG
T ss_pred             EEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCchH
Confidence            56789999999999863211112268999987432211110          00123343332      237999999999


Q ss_pred             CCCcceEEEeeecC
Q psy12724        139 DGYKSYQCRTKHRL  152 (167)
Q Consensus       139 D~~G~Y~C~a~n~~  152 (167)
                      |+ |.|+|.|.|..
T Consensus        94 D~-G~Y~C~a~n~~  106 (226)
T 4f80_A           94 DS-GKYLCYFQDGD  106 (226)
T ss_dssp             GC-EEEEEEEEETT
T ss_pred             HC-eeEEEEEECCC
Confidence            99 99999999976

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.07  E-value=8.1e-10  Score=93.95  Aligned_cols=129  Identities=16%  Similarity=0.191  Sum_probs=79.6

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCcee--------eecCCc-e-----E--------EEeeeEEEecC
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQY--------QIDNQD-F-----V--------VSQSYTVNIMD   74 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~--------~~~~~~-~-----v--------~~g~y~c~~~~   74 (167)
                      +....+.+|+++.|.|.+.++.++ ...|+|+|++....        ..+.+. +     +        ..|.|+|.+.+
T Consensus       304 p~~~~~~~g~~~~L~C~v~g~~P~-~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n  382 (512)
T 1zvo_C          304 PAVQDLWLRDKATFTCFVVGSDLK-DAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNH  382 (512)
T ss_pred             CChHHhccCCceEEEEEEeceECC-CeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEe
Confidence            333446789999999999887332 23799999865321        011111 1     1        15999998743


Q ss_pred             e-------E----------------EE----eCCcEE-EEeeeCCccCCcc-eeEEEEeCCCeeeEEeeeecCCceEEEc
Q psy12724         75 E-------H----------------VL----KGNSAV-LKCHIPSFVADYV-AVESWISDQGEELFVDMTESTDGKYLVL  125 (167)
Q Consensus        75 ~-------~----------------v~----~G~~a~-l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~~~~~~~r~~~~  125 (167)
                      .       .                +.    .|+.+. |.|.+.++  .|. ..++|+||+ ..+....  .........
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~L~C~~~g~--~P~~i~v~W~k~g-~~~~~~~--~~~~~~~~~  457 (512)
T 1zvo_C          383 PSLPPQRLMALREPAAQAPVKLSLNLLASSDPPEAASWLLCEVSGF--SPPNILLMWLEDQ-REVNTSG--FAPARPPPQ  457 (512)
T ss_pred             CCCCCCceeEEeecCCCCCCCCEEEEEccCcCCCCceEEEEEEeee--CCCCcEEEEEECC-eECcCcc--ccccceeEC
Confidence            1       0                11    378899 99999864  243 358999997 4553110  000112223


Q ss_pred             cCC-------eEEEeecCcCCCCcceEEEeeecC
Q psy12724        126 PSG-------ELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       126 ~~g-------~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+|       .|.|.....+|. |.|+|.|.|..
T Consensus       458 ~dg~~~~~~s~L~v~~~~~~~~-g~YtC~v~h~~  490 (512)
T 1zvo_C          458 PGSTTFWAWSVLRVPAPPSPQP-ATYTCVVSHED  490 (512)
T ss_pred             CCCCEEEEEEEEEECchhcCCC-CeEEEEEEecC
Confidence            344       366777777778 99999999975

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=99.07  E-value=6.3e-10  Score=75.85  Aligned_cols=87  Identities=17%  Similarity=0.235  Sum_probs=57.7

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCe------eeEEee----eecCCceEEEcc-----CCeEEEeecCcC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGE------ELFVDM----TESTDGKYLVLP-----SGELHIRDVGPE  138 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~------~l~~~~----~~~~~~r~~~~~-----~g~L~I~~v~~~  138 (167)
                      +..+.+|++|+|+|.+.+.  .+.+.+.|+|....      .+....    .....+|+.+..     +..|.|++++.+
T Consensus         6 ~v~~~~G~~v~L~C~~~~~--~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~   83 (116)
T 2or8_A            6 EVKGVVGHPVTLPCTYSTY--RGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVES   83 (116)
T ss_dssp             EEEEETTSCEEECCBCCCT--TCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGG
T ss_pred             eEEEEeCCcEEEEEEeeCC--CCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCcc
Confidence            3567899999999998642  23456899997511      111100    011356776532     247999999999


Q ss_pred             CCCcceEEEeeecC-----cceEEEeeeCC
Q psy12724        139 DGYKSYQCRTKHRL-----TGETRLSATKG  163 (167)
Q Consensus       139 D~~G~Y~C~a~n~~-----~~~~~l~~~~~  163 (167)
                      |+ |.|.|.+.|..     ...+.|.+.|.
T Consensus        84 Ds-G~Y~C~v~~~~~~~~~~~~~~l~V~p~  112 (116)
T 2or8_A           84 DS-GLYCCRVEIPGWFNDQKVTFSLQVKPE  112 (116)
T ss_dssp             GC-EEEEEEECCSSTTCCEEEEEEEEEECS
T ss_pred             cC-EEEEEEEEcCCcccccEEEEEEEECCc
Confidence            99 99999999864     23456666554

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.07  E-value=5.8e-10  Score=84.63  Aligned_cols=86  Identities=19%  Similarity=0.269  Sum_probs=59.1

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCc----ceeEEEEeCCC-eee--EEee----eecCCceEEEccCC---eEEEeecCc
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADY----VAVESWISDQG-EEL--FVDM----TESTDGKYLVLPSG---ELHIRDVGP  137 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p----~p~i~W~k~~~-~~l--~~~~----~~~~~~r~~~~~~g---~L~I~~v~~  137 (167)
                      +.+..+.+|++|.|+|.+.+   .|    .|.+.|+|++. ..+  ....    .....+|+.+..++   .|.|++++.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~---~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   84 (240)
T 1moe_A            8 PASLAVSLGQRATMSCRAGE---SVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEA   84 (240)
T ss_dssp             CSEEEECTTSCEEEEEEESS---CCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             CCeEEecCCCCEEEEEeCCC---ccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCCh
Confidence            34567889999999999985   36    78899999631 111  1100    00124577765433   799999999


Q ss_pred             CCCCcceEEEeeecC----cceEEEeee
Q psy12724        138 EDGYKSYQCRTKHRL----TGETRLSAT  161 (167)
Q Consensus       138 ~D~~G~Y~C~a~n~~----~~~~~l~~~  161 (167)
                      +|+ |.|.|.|.|..    +..+.|.+.
T Consensus        85 ~D~-G~Y~C~~~n~~~~~~~~~~~l~V~  111 (240)
T 1moe_A           85 DDV-ATYYCQQTNEDPYTFGGGTKLEIK  111 (240)
T ss_dssp             GGC-EEEEEEECSSSSCCBCCCEEEEEC
T ss_pred             hhC-EEEEEEEccCCceeecCCEEEEEe
Confidence            999 99999999973    344556553

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=99.07  E-value=1.8e-10  Score=78.37  Aligned_cols=64  Identities=23%  Similarity=0.304  Sum_probs=47.0

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc-cCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL-PSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~-~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+.+|++|+|.|.+.+    +.+.+.|+|++ ..+..       +++... .+..|.|.+++.+|+ |.|+|.+.|..
T Consensus        15 ~v~~G~~VtL~C~~~~----~~~~~~w~k~g-~~~~~-------~~~~~~~~~~~l~I~~v~~~ds-G~Y~C~~~n~~   79 (105)
T 2vsd_A           15 GVSLGDTVTLRCHLPR----MAAWVQLWLNG-TLRFD-------KEKDKEQDAAEFSFAVTNLEDA-GTYQCRYQVSE   79 (105)
T ss_dssp             SCCTTCEEEEEEECCS----SCEEEEEEETT-EEEEE-------EEECTTCSEEEEEEECCSGGGC-EEEEEEEEEET
T ss_pred             CcCcCCCEEEEEEcCC----CCcEEEEEECC-cccee-------eeccCCCCEEEEEECCCCHHHC-eEEEEEEEcCC
Confidence            5778999999999974    23567999997 44321       122111 124799999999999 99999999853

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.07  E-value=7.2e-10  Score=83.40  Aligned_cols=69  Identities=26%  Similarity=0.408  Sum_probs=56.6

Q ss_pred             eeEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEE
Q psy12724         67 SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        67 ~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C  146 (167)
                      .+...+.+..+.+|+++.|.|.+.+   .|.+.++|+|++ ..+.       .+     .++.|.|.+++.+|+ |.|+|
T Consensus        20 ~i~~~p~~~~v~~G~~v~L~C~~~~---~p~~~v~W~~~~-~~~~-------~~-----~~~~L~i~~v~~~d~-G~Y~C   82 (218)
T 3k0w_A           20 KITVNPESKAVLAGQFVKLCCRATG---HPFVQYQWFKMN-KEIP-------NG-----NTSELIFNAVHVKDA-GFYVC   82 (218)
T ss_dssp             CEEECCCCEEEETTSBEEEECEETT---TTSSEEEEEETT-EECT-------TC-----CSSEEEETTCCGGGC-EEEEE
T ss_pred             EEEECCCCeEEeCCCcEEEEeeecC---CCCCEEEEEECC-EECC-------CC-----CCCEEEEccCChhhC-eEeEE
Confidence            3555667788999999999999974   588899999997 4442       11     256899999999999 99999


Q ss_pred             EeeecC
Q psy12724        147 RTKHRL  152 (167)
Q Consensus       147 ~a~n~~  152 (167)
                      .|.|..
T Consensus        83 ~~~n~~   88 (218)
T 3k0w_A           83 RVNNNF   88 (218)
T ss_dssp             EEECTT
T ss_pred             EEEcCC
Confidence            999985

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.06  E-value=1.8e-10  Score=89.43  Aligned_cols=123  Identities=13%  Similarity=0.281  Sum_probs=77.5

Q ss_pred             EEeCCcEEEEeecCCCC--CCcceeeEEeeCCCceee--------ecCC-ce-----E--------EEeeeEEEecCe--
Q psy12724         22 VIKGNAAVFKCNLPSFV--SDHLDVVSWADTDGGQYQ--------IDNQ-DF-----V--------VSQSYTVNIMDE--   75 (167)
Q Consensus        22 v~~G~~~~l~C~a~~~~--~~~~~~i~W~k~~~~~~~--------~~~~-~~-----v--------~~g~y~c~~~~~--   75 (167)
                      +..|+++.|.|.+.++.  ++ -..|+|+|++. .+.        .+.+ .+     +        ..+.|+|.+.+.  
T Consensus        36 l~~g~~~~L~C~v~g~~p~P~-~i~v~W~k~g~-~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~  113 (240)
T 4acp_A           36 LMISRTPEVTCVVVDVSHEDP-EVKFNWYVDGV-EVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL  113 (240)
T ss_dssp             HSSSSCCEEEEEEESCCC--C-CCEEEEEETTE-EECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC--
T ss_pred             cccCCCcEEEEEEeccccCCC-ccEEEEEECCc-ccCCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCC
Confidence            33599999999999975  22 13699999854 331        1111 11     1        148999987431  


Q ss_pred             --------------------EE-------EeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEee----eecCCceEE
Q psy12724         76 --------------------HV-------LKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDM----TESTDGKYL  123 (167)
Q Consensus        76 --------------------~v-------~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~----~~~~~~r~~  123 (167)
                                          .+       +.|+.+.|.|.+.++  .|.+ .++|+||+ ..+....    ..+.++.|.
T Consensus       114 ~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf--~P~~i~v~W~k~g-~~~~~~~~~~~~~~~dgt~~  190 (240)
T 4acp_A          114 PAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGF--YPSDIAVEWESNG-QPENNYKATPPVLDSDGSFF  190 (240)
T ss_dssp             --CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEE--BSSCCEEEEEETT-EECSSEEECCCEECTTSCEE
T ss_pred             CccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEE--eCCCcEEEEEECC-EECCCcCccCceECCCCCEE
Confidence                                01       138899999999864  2554 78999997 4442110    011233343


Q ss_pred             EccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724        124 VLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       124 ~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.  ..|.|......|. |.|+|.+.|..
T Consensus       191 ~~--s~L~v~~~~~~~~-~~ytC~V~h~~  216 (240)
T 4acp_A          191 LY--SKLTVDKSRWQQG-NVFSCSVMHEA  216 (240)
T ss_dssp             EE--EEEEEEHHHHHTT-CCEEEEEECTT
T ss_pred             EE--EEEEEChHHhCCC-CEEEEEEEECC
Confidence            32  3577777777788 99999999976

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.06  E-value=4.1e-10  Score=83.95  Aligned_cols=77  Identities=17%  Similarity=0.323  Sum_probs=54.5

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEe----eeecCCceEEEccCC---eEEEeecCcCCCC
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVD----MTESTDGKYLVLPSG---ELHIRDVGPEDGY  141 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~----~~~~~~~r~~~~~~g---~L~I~~v~~~D~~  141 (167)
                      +.+..+.+|++|.|+|.+.+   .|.|.++|+|++ +..+  ...    ......+|+.+..++   .|.|.+++.+|+ 
T Consensus         7 p~~~~v~~G~~v~L~C~~~~---~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~-   82 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASE---SVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDT-   82 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESS---CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-
T ss_pred             CCcEEEcCCCCEEEEeeCCC---ccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHC-
Confidence            44567889999999999974   467789999853 1111  100    000113577665433   899999999999 


Q ss_pred             cceEEEeeecC
Q psy12724        142 KSYQCRTKHRL  152 (167)
Q Consensus       142 G~Y~C~a~n~~  152 (167)
                      |.|.|.|.|..
T Consensus        83 G~Y~C~~~~~~   93 (210)
T 1lk3_L           83 AIYFCQQSWNG   93 (210)
T ss_dssp             EEEEEEECSSS
T ss_pred             eEEEEEEEcCC
Confidence            99999999975

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.06  E-value=6.1e-10  Score=82.88  Aligned_cols=85  Identities=16%  Similarity=0.303  Sum_probs=58.0

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-C-ee-eEEee----eecCCceEEEcc---CCeEEEeecCcCCCC
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-G-EE-LFVDM----TESTDGKYLVLP---SGELHIRDVGPEDGY  141 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~-~~-l~~~~----~~~~~~r~~~~~---~g~L~I~~v~~~D~~  141 (167)
                      +.+..+.+|+++.|+|.+.+   .|.+.++|+|++ + .. +....    .....+||.+..   ++.|.|++++.+|+ 
T Consensus         8 p~~~~v~~G~~v~L~C~~~~---~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~-   83 (213)
T 3r06_A            8 PSSLPASLGDRVTINCQASQ---DISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDI-   83 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESS---CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-
T ss_pred             CCEEEecCCCcEEEEEEeCC---CcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccC-
Confidence            34467889999999999985   378899999842 1 11 11100    001245776553   33799999999999 


Q ss_pred             cceEEEeeecC----cceEEEee
Q psy12724        142 KSYQCRTKHRL----TGETRLSA  160 (167)
Q Consensus       142 G~Y~C~a~n~~----~~~~~l~~  160 (167)
                      |.|+|.|.|..    ...+.|.+
T Consensus        84 G~Y~C~~~~~~~~~~~~~~~l~V  106 (213)
T 3r06_A           84 GSYYCQQYYNYPWTFGPGTKLEI  106 (213)
T ss_dssp             SEEEEEECSSSSCEECCCEEEEE
T ss_pred             EEEEEecccCCceEEcCCceEEE
Confidence            99999999863    44455555

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.06  E-value=3.4e-10  Score=84.92  Aligned_cols=76  Identities=16%  Similarity=0.261  Sum_probs=54.9

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCc-ceeEEEEeCCCe----eeEEeeeec--CCceEE----------EccCCeEEEeec
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADY-VAVESWISDQGE----ELFVDMTES--TDGKYL----------VLPSGELHIRDV  135 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p-~p~i~W~k~~~~----~l~~~~~~~--~~~r~~----------~~~~g~L~I~~v  135 (167)
                      .+..+.+|+++.|.|.+.+   .| .+.++|+|++..    .+.......  ..+|+.          +..+|.|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~---~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v   84 (231)
T 2pet_A            8 PLVEVMRGKSVILDCTPTG---THDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEA   84 (231)
T ss_dssp             SEEEEETTCCEEECCCCBS---CCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSC
T ss_pred             CcEEEEcCCCEEEecccCC---CCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEccc
Confidence            4567889999999999975   36 489999987532    221110000  123444          677788999999


Q ss_pred             CcCCCCcceEEEeeecC
Q psy12724        136 GPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n~~  152 (167)
                      +.+|+ |.|+|.|.|..
T Consensus        85 ~~~D~-G~Y~C~~~~~~  100 (231)
T 2pet_A           85 QVGDE-RDYVCVVRAGA  100 (231)
T ss_dssp             CGGGC-EEEEEEEECGG
T ss_pred             CcccC-ceEEEEEEecC
Confidence            99999 99999999875

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.06  E-value=3.1e-10  Score=82.89  Aligned_cols=81  Identities=17%  Similarity=0.279  Sum_probs=56.7

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-------eecCCceEEEc----cCC--eEEEeecCcCCCC
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-------TESTDGKYLVL----PSG--ELHIRDVGPEDGY  141 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-------~~~~~~r~~~~----~~g--~L~I~~v~~~D~~  141 (167)
                      ..+.+|+++.|+|.+.   +.|.+.++|+|++...+....       .....+|+...    .+|  .|.|.+++.+|+ 
T Consensus         5 v~~~~G~~v~L~C~~~---~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~-   80 (184)
T 2ny1_B            5 VLGKKGDTVELTCTAS---QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS-   80 (184)
T ss_dssp             EEEETTSCEEECCBCS---SSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGC-
T ss_pred             EEEeCCCCEEEEEEEc---CCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHC-
Confidence            4678999999999987   458889999999743222110       00113455443    334  499999999999 


Q ss_pred             cceEEEeeecCcceEEEee
Q psy12724        142 KSYQCRTKHRLTGETRLSA  160 (167)
Q Consensus       142 G~Y~C~a~n~~~~~~~l~~  160 (167)
                      |.|+|.+.|.. +.+.|.+
T Consensus        81 G~Y~C~~~~~~-~~~~l~V   98 (184)
T 2ny1_B           81 DTYICEVEDQK-EEVQLLV   98 (184)
T ss_dssp             EEEEEEETTEE-EEEEEEE
T ss_pred             EEEEEEEEcCC-CcEEEEE
Confidence            99999999975 3455544

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.05  E-value=4.2e-10  Score=85.62  Aligned_cols=67  Identities=13%  Similarity=0.230  Sum_probs=49.1

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEE-EccCC--eEEEeecCcCCCCcceEEEeeec
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYL-VLPSG--ELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~-~~~~g--~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      ..+.+|++++|.|.+.+    |.+.++|+||+ ..+...     ..++. ...++  .|.|.+++.+|+ |.|+|.|.|.
T Consensus        18 ~~v~~G~~vtL~C~~~~----~~~~~~W~k~g-~~~~~~-----~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~   86 (218)
T 1uct_A           18 PVIPLDGSVKIQCQAIR----EAYLTQLMIIK-NSTYRE-----IGRRLKFWNETDPEFVIDHMDANKA-GRYQCQYRIG   86 (218)
T ss_dssp             SEEETTCCEEEEECCCT----TCSEEEEEEEE-TTEEEE-----CSEECC----CCCEEEECSCCGGGC-EEEEEEEEET
T ss_pred             CccCCCCCEEEEEEcCC----CCCEEEEEECC-Cccccc-----ccccCCCCcceeeEEEEcccccccC-EEEEEEEEcC
Confidence            46789999999999973    56789999997 344321     11111 12345  899999999999 9999999996


Q ss_pred             C
Q psy12724        152 L  152 (167)
Q Consensus       152 ~  152 (167)
                      .
T Consensus        87 ~   87 (218)
T 1uct_A           87 H   87 (218)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=99.05  E-value=1.1e-09  Score=76.62  Aligned_cols=75  Identities=23%  Similarity=0.383  Sum_probs=51.2

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCee--eEEeeeecCCceEEEc--------cCCeEEEeecCcCCCCcc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEE--LFVDMTESTDGKYLVL--------PSGELHIRDVGPEDGYKS  143 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~--l~~~~~~~~~~r~~~~--------~~g~L~I~~v~~~D~~G~  143 (167)
                      +..+.+|++|+|.|.+.+.  .|.+.+.|+|+++..  +.........+|+...        .+..|.|.+++.+|+ |.
T Consensus        12 ~~~v~~G~~vtL~C~~~~~--~~~~~v~W~r~~~~~~~li~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~Ds-G~   88 (127)
T 2jju_A           12 SVSVAAGESATLRCAMTSL--IPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADA-GT   88 (127)
T ss_dssp             EEEEETTSCEEECCEESCC--CSCCCEEEEECSSTTCEEEEESSSSCCTTEEEC-------CCBCCEEECSCCGGGC-EE
T ss_pred             eEEEeCCCCEEEEEEEeCC--CCCCEEEEEecCCCCcEEEEECCCCccCcEEeeEeeeecCCCEEEEEECCCCHHHC-EE
Confidence            4678899999999999742  256789999976321  2111100011355432        134799999999999 99


Q ss_pred             eEEEeeec
Q psy12724        144 YQCRTKHR  151 (167)
Q Consensus       144 Y~C~a~n~  151 (167)
                      |.|.+.|.
T Consensus        89 Y~C~~~~~   96 (127)
T 2jju_A           89 YYCVKFRK   96 (127)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEcC
Confidence            99999985

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.05  E-value=5.7e-10  Score=85.53  Aligned_cols=78  Identities=17%  Similarity=0.171  Sum_probs=55.8

Q ss_pred             eEEEecCe--EEEeCCcEEEEeeeCCccCCcce--eEEEEeCCCeeeEEeeeecCCceEE-EccCCeEEEeecCcCCCCc
Q psy12724         68 YTVNIMDE--HVLKGNSAVLKCHIPSFVADYVA--VESWISDQGEELFVDMTESTDGKYL-VLPSGELHIRDVGPEDGYK  142 (167)
Q Consensus        68 y~c~~~~~--~v~~G~~a~l~C~~~~~~~~p~p--~i~W~k~~~~~l~~~~~~~~~~r~~-~~~~g~L~I~~v~~~D~~G  142 (167)
                      +...+.+.  .|.+|+++.|.|.+ +.   |.|  .|+|++.+. .+         ++.. ...++.|.|+|++.+|+ |
T Consensus         8 ~~V~pp~~~v~v~~G~sv~L~C~a-~~---p~P~~~i~W~~~~~-~l---------~~~~~~~~~~~L~I~~v~~~d~-G   72 (210)
T 1gsm_A            8 LQVEPPEPVVAVALGASRQLTCRL-AC---ADRGASVQWRGLDT-SL---------GAVQSDTGRSVLTVRNASLSAA-G   72 (210)
T ss_dssp             EEEESCCSEEEEETTCCEEEEEEE-CC---SSTTCEEEEESSTT-TT---------CCEEEESSEEEEEECSCCGGGC-E
T ss_pred             EEEeCCCCceEEeCCCCEEEEEEC-CC---CCCCcceEEeeccc-cc---------CcEEecCCccEEEECccCcccC-c
Confidence            44444443  78899999999999 43   555  999999762 22         2222 22345799999999999 9


Q ss_pred             ceEEEeeecC---cceEEEee
Q psy12724        143 SYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       143 ~Y~C~a~n~~---~~~~~l~~  160 (167)
                      .|.|.|.|..   +..++|++
T Consensus        73 ~Y~C~a~n~~~~~~~~~~ltV   93 (210)
T 1gsm_A           73 TRVCVGSCGGRTFQHTVQLLV   93 (210)
T ss_dssp             EEEEEEEETTEEEEEEEEEEE
T ss_pred             eEEEEEEeCCCceEEEEEEEE
Confidence            9999999986   33345544

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=99.05  E-value=4.4e-10  Score=76.87  Aligned_cols=75  Identities=24%  Similarity=0.348  Sum_probs=52.1

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeEEeeeecCCceEEEcc-----CCeEEEeecCcCCCCcceE
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELFVDMTESTDGKYLVLP-----SGELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~~~~~~~~~~r~~~~~-----~g~L~I~~v~~~D~~G~Y~  145 (167)
                      +.+..+.+|++|+|.|.+.+. ..|.+.+.|+|+. +.......  ...+|+.+..     +..|.|++++.+|+ |.|.
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~-~~~~~~v~W~r~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~   82 (111)
T 2ywz_A            7 PRTITKETGESLTIKCVLKDH-SCGLSSTTWYRTQLGSTNEKTI--SIGGRYDETVDKGSKSFSLRISDLRVEDS-GTYK   82 (111)
T ss_dssp             CSEEEECTTCCEEEEEEEESC-SSCCCEEEEEEEETTCCCCEEC--CSBTTEEEEEETTTTEEEEEECSCCGGGC-EEEE
T ss_pred             CCcEEEccCCCEEEEeEECCC-CCCCCEEEEEEeCCCCCceEee--EeCCCEEEEEeCCCCEEEEEECCCChhcC-EEEE
Confidence            345678899999999998643 1156789999863 11110001  1346776431     23799999999999 9999


Q ss_pred             EEeee
Q psy12724        146 CRTKH  150 (167)
Q Consensus       146 C~a~n  150 (167)
                      |.+.|
T Consensus        83 C~~~~   87 (111)
T 2ywz_A           83 CQADY   87 (111)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99998

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=99.05  E-value=5.1e-10  Score=77.14  Aligned_cols=76  Identities=25%  Similarity=0.368  Sum_probs=50.3

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCee--eEEeeeecCCceEEE-----c-c--CCeEEEeecCcCCCCcc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEE--LFVDMTESTDGKYLV-----L-P--SGELHIRDVGPEDGYKS  143 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~--l~~~~~~~~~~r~~~-----~-~--~g~L~I~~v~~~D~~G~  143 (167)
                      +..+.+|++|+|+|.+.+.  .|.+.+.|+|+++..  +.........+|+..     . .  +..|.|++++.+|+ |.
T Consensus        16 ~~~~~~G~~v~L~C~~~~~--~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~Ds-G~   92 (120)
T 2yz1_A           16 SVSVAAGDSTVLNCTLTSL--LPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIRISNVTPEDA-GT   92 (120)
T ss_dssp             EEEECTTCCEEECCEESCC--CSCCCEEEEESSSTTCEEEEEECEECTTTCCSEEECCBSSTTBCCEEECSCCGGGC-EE
T ss_pred             eEEEeCCCCEEEEeEECCC--CCCcEEEEEcCCCCCcEEEEEcCCcccCcccceeeccccCCCeEEEEECCCCHHHC-EE
Confidence            4578899999999999742  256789999986321  221110001122211     1 1  24799999999999 99


Q ss_pred             eEEEeeecC
Q psy12724        144 YQCRTKHRL  152 (167)
Q Consensus       144 Y~C~a~n~~  152 (167)
                      |.|.+.+..
T Consensus        93 Y~C~~~~~~  101 (120)
T 2yz1_A           93 YYCVKFQKG  101 (120)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEcCC
Confidence            999999864

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.04  E-value=8.6e-10  Score=82.22  Aligned_cols=75  Identities=20%  Similarity=0.380  Sum_probs=52.1

Q ss_pred             CeEEEeCCcEEEEeeeCCccCC-cceeEEEEeCC---CeeeEEeee--------ecCCceEEEcc---CCeEEEeecCcC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVAD-YVAVESWISDQ---GEELFVDMT--------ESTDGKYLVLP---SGELHIRDVGPE  138 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~-p~p~i~W~k~~---~~~l~~~~~--------~~~~~r~~~~~---~g~L~I~~v~~~  138 (167)
                      +..+.+|++|.|+|.+.+   . |.+.+.|+|++   ...+.-...        ....+|+.+..   ++.|.|.+++.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~---~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   85 (218)
T 3s96_B            9 SASFSLGASAKLTCTLNS---QHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPE   85 (218)
T ss_dssp             EEEEETTSCEEEEEEECG---GGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             cEEECCCCcEEEEEECCC---CCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcc
Confidence            457889999999999984   4 78899999832   111110000        00124666543   346999999999


Q ss_pred             CCCcceEEEeeecC
Q psy12724        139 DGYKSYQCRTKHRL  152 (167)
Q Consensus       139 D~~G~Y~C~a~n~~  152 (167)
                      |+ |.|.|.|.|..
T Consensus        86 D~-G~Y~C~~~~~~   98 (218)
T 3s96_B           86 DE-AIYICGVGDTI   98 (218)
T ss_dssp             GC-EEEEEEEEEEE
T ss_pred             cC-EEEEEEEecCC
Confidence            99 99999998864

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.04  E-value=3.6e-10  Score=85.73  Aligned_cols=78  Identities=22%  Similarity=0.352  Sum_probs=55.2

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCee----eEEe-------------------eeecCCceEEEcc--CC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEE----LFVD-------------------MTESTDGKYLVLP--SG  128 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~----l~~~-------------------~~~~~~~r~~~~~--~g  128 (167)
                      +..+.+|+++.|+|.+.+....|.|.++|+|++...    +...                   ......+|..+..  ++
T Consensus        11 ~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~   90 (250)
T 2fbo_J           11 EVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAP   90 (250)
T ss_dssp             EEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTTSC
T ss_pred             ceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCCcc
Confidence            457789999999999864212588899999986321    1110                   0011245665554  35


Q ss_pred             eEEEeecCcCCCCcceEEEeeecC
Q psy12724        129 ELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       129 ~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .|.|++++.+|+ |.|+|.|.|..
T Consensus        91 ~L~I~~v~~~D~-G~Y~C~~~~~~  113 (250)
T 2fbo_J           91 TLRLTHVHPQDG-GRYWCQVAQWS  113 (250)
T ss_dssp             CEEECSCCGGGC-EEEEEEEECTT
T ss_pred             eEEEeeCChhhC-eEEEEEeccCc
Confidence            899999999999 99999999965

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.04  E-value=7.7e-10  Score=84.41  Aligned_cols=87  Identities=20%  Similarity=0.317  Sum_probs=57.7

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-eee--EEee---------eecCCceEEEccC-----CeEEEeec
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-EEL--FVDM---------TESTDGKYLVLPS-----GELHIRDV  135 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~~l--~~~~---------~~~~~~r~~~~~~-----g~L~I~~v  135 (167)
                      .+..+.+|++|+|+|.+.+. ..+.+.+.|+|++. ..+  ....         .....+|+.+..+     +.|.|.++
T Consensus        10 ~~~~v~~G~~v~L~C~~~g~-p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (247)
T 2ghw_B           10 GGGVVQPGKSLRLSCAASGF-AFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL   88 (247)
T ss_dssp             CCEEECTTCCEEEEEEEESS-CGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCEEEecCCcEEEEEEeccc-cCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence            45678899999999999753 11267899998531 111  1000         0012467776542     36999999


Q ss_pred             CcCCCCcceEEEeeecC-----cceEEEeee
Q psy12724        136 GPEDGYKSYQCRTKHRL-----TGETRLSAT  161 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n~~-----~~~~~l~~~  161 (167)
                      +.+|+ |.|.|.|.|..     +..+.|.+.
T Consensus        89 ~~~D~-G~Y~C~~~n~~~~~~~~~~~~l~V~  118 (247)
T 2ghw_B           89 RAEDT-AVYYCARDRSYYLDYWGQGTLVTVS  118 (247)
T ss_dssp             CGGGC-EEEEEEEEETTEEEEECCCEEEEEC
T ss_pred             CHHHC-EEEEEeeeccCCccccCCceEEEEe
Confidence            99999 99999999972     334455554

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.04  E-value=3.9e-10  Score=83.37  Aligned_cols=76  Identities=14%  Similarity=0.143  Sum_probs=53.7

Q ss_pred             eEEEeCCcEEEEeeeCCcc-CCcceeEEEEeCCCeeeEEee------eecCCceEEE--ccCCeEEEeecCcCCCCcceE
Q psy12724         75 EHVLKGNSAVLKCHIPSFV-ADYVAVESWISDQGEELFVDM------TESTDGKYLV--LPSGELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~-~~p~p~i~W~k~~~~~l~~~~------~~~~~~r~~~--~~~g~L~I~~v~~~D~~G~Y~  145 (167)
                      ..+.+|++|.|+|.+.+.. +.|.+.+.|.|++ ..+....      .+...+|..+  ..++.|.|.+++.+|+ |.|+
T Consensus         4 v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~-~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~-G~Y~   81 (201)
T 1dr9_A            4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEK-KMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDE-GTYE   81 (201)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETT-EEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGC-EEEE
T ss_pred             EEEEeCCCEEEecccCCCcccccccEEEEEeCC-cEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhC-eEEE
Confidence            5678999999999985321 3478899999997 4542110      0001233332  2456899999999999 9999


Q ss_pred             EEeeecC
Q psy12724        146 CRTKHRL  152 (167)
Q Consensus       146 C~a~n~~  152 (167)
                      |.|.|..
T Consensus        82 C~~~~~~   88 (201)
T 1dr9_A           82 CVVLKYE   88 (201)
T ss_dssp             EEEEECC
T ss_pred             EEEEcCC
Confidence            9999954

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.04  E-value=8.6e-10  Score=84.76  Aligned_cols=81  Identities=17%  Similarity=0.322  Sum_probs=55.8

Q ss_pred             EecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCee-----eEEee------eecCCceEEEcc-----CCeEEEee
Q psy12724         71 NIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEE-----LFVDM------TESTDGKYLVLP-----SGELHIRD  134 (167)
Q Consensus        71 ~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~-----l~~~~------~~~~~~r~~~~~-----~g~L~I~~  134 (167)
                      .+.+..+.+|+++.|+|.+....+.|.+.++|+|++...     +....      .+.-.+|+.+..     ++.|.|++
T Consensus        11 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   90 (268)
T 3mj6_A           11 SSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQD   90 (268)
T ss_dssp             -CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECS
T ss_pred             CCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECC
Confidence            344567889999999999863334588899999965311     00000      000125565532     37899999


Q ss_pred             cCcCCCCcceEEEeeecC
Q psy12724        135 VGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       135 v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++.+|+ |.|+|.|.|..
T Consensus        91 v~~~D~-G~Y~C~~~~~~  107 (268)
T 3mj6_A           91 VQKADE-GIYTCEIRLKN  107 (268)
T ss_dssp             CCGGGC-EEEEEEEEETT
T ss_pred             CCHhHC-EEEEEEEEecC
Confidence            999999 99999999864

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.04  E-value=1.1e-09  Score=81.56  Aligned_cols=75  Identities=15%  Similarity=0.168  Sum_probs=52.9

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeC--CCeeeEEee-----eecCCceEEEc---cCCeEEEeecCcCCCCcc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISD--QGEELFVDM-----TESTDGKYLVL---PSGELHIRDVGPEDGYKS  143 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~--~~~~l~~~~-----~~~~~~r~~~~---~~g~L~I~~v~~~D~~G~  143 (167)
                      +..+.+|++|.|+|.+.   +.|.+.+.|+|+  +.....-..     .....+|+.+.   .++.|.|++++.+|+ |.
T Consensus         9 ~~~v~~G~~v~L~C~~~---~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~-G~   84 (213)
T 3mj8_L            9 LVSVALGQKATITCSGD---KLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDE-AD   84 (213)
T ss_dssp             EEEEETTSCEEEEEECS---STTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC-EE
T ss_pred             cEEEeCCCCEEEEEEcC---CCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhC-EE
Confidence            45788999999999998   458899999983  211111000     00123566643   244799999999999 99


Q ss_pred             eEEEeeecC
Q psy12724        144 YQCRTKHRL  152 (167)
Q Consensus       144 Y~C~a~n~~  152 (167)
                      |+|.|.|..
T Consensus        85 Y~C~~~~~~   93 (213)
T 3mj8_L           85 YYCQSWDGT   93 (213)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEeccCC
Confidence            999999975

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.03  E-value=4.8e-10  Score=82.18  Aligned_cols=68  Identities=19%  Similarity=0.273  Sum_probs=50.7

Q ss_pred             cCeEEEe-CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         73 MDEHVLK-GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        73 ~~~~v~~-G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      .+..+.+ |+++.|.|.+.+. ..|.+.++|+|++ ..+.      ...++  ..++.|.|.+++.+|+ |.|+|.|.|.
T Consensus        10 ~~~~v~~~G~~v~l~C~~~~~-~~~~~~v~W~~~~-~~~~------~~~~~--~~~~~L~i~~~~~~d~-G~Y~C~~~n~   78 (190)
T 2wv3_A           10 EEVIIRDSLLPVTLQCNLTSS-SHTLMYSYWTKNG-VELT------ATRKN--ASNMEYRINKPRAEDS-GEYHCVYHFV   78 (190)
T ss_dssp             CCEECCCSSSCEEEEEEEEEC-SSCEEEEEEEETT-EECT------TCCBC--CSEEEEEESSCCGGGC-EEEEEEEEET
T ss_pred             ceEEEccCCceEEEEEEeccC-CCCceEEEEEECC-EECc------ccceE--eccEEEEEecCCcccC-EEEEEEEEeC
Confidence            3445556 9999999999754 1134899999997 4542      12222  2567899999999999 9999999997

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.03  E-value=7.1e-10  Score=84.58  Aligned_cols=76  Identities=16%  Similarity=0.219  Sum_probs=52.5

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ce---eeEEee--------eecCCceEEEcc----CCeEEEeec
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GE---ELFVDM--------TESTDGKYLVLP----SGELHIRDV  135 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~---~l~~~~--------~~~~~~r~~~~~----~g~L~I~~v  135 (167)
                      +.+..+.+|++|.|+|.+.+   .|.+.+.|+|.. +.   .+....        .....+|+.+..    +..|.|+++
T Consensus         8 p~~~~v~~G~~v~L~C~~~~---~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v   84 (246)
T 4dzb_B            8 PSWVISKSGTSVKIECRSLD---FQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSA   84 (246)
T ss_dssp             CSEEEEETTSCEEEEEEESS---SCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSC
T ss_pred             CcEEEEeCCCcEEEEeEecC---CCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCC
Confidence            34567889999999999985   488899999821 00   111000        000126776653    237999999


Q ss_pred             CcCCCCcceEEEeeec
Q psy12724        136 GPEDGYKSYQCRTKHR  151 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n~  151 (167)
                      +.+|+ |.|.|.|.|.
T Consensus        85 ~~~D~-G~Y~C~~~~~   99 (246)
T 4dzb_B           85 HPEDS-SFYICSARTS   99 (246)
T ss_dssp             CGGGC-EEEEEEECCS
T ss_pred             CHHHC-EEEEEEEecC
Confidence            99999 9999999875

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.03  E-value=5.4e-10  Score=82.74  Aligned_cols=64  Identities=13%  Similarity=0.124  Sum_probs=49.6

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .|+.+.|.|.+.++  +|.|.++|+|++ ..+.      ...++.+..++   .|.|.+++.+|+ |.|+|.|.|..
T Consensus        16 ~~~~~~l~C~~~~~--~p~~~i~W~~~g-~~i~------~~~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~~~n~~   82 (212)
T 2r15_A           16 TAEGIQLYSFVTYY--VEDLKVNWSHNG-SAIR------YSDRVKTGVTGEQIWLQINEPTPNDK-GKYVMELFDGK   82 (212)
T ss_dssp             CSSEEEEEEEBSSC--CSSCEEEEEETT-EECC------CCSSEEEEEETTEEEEEEESCCGGGC-EEEEEEEECSS
T ss_pred             cCceEEEEEEEecc--CCCceEEEEECC-EEcc------CCCeEEEEEeCCEEEEEECCCCcccC-EEEEEEEecCC
Confidence            47778888888753  468899999997 5553      24566554433   499999999999 99999999976

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.03  E-value=6.4e-10  Score=82.97  Aligned_cols=88  Identities=18%  Similarity=0.164  Sum_probs=58.4

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee---EEee-------eecCCceEEEccC-----CeEEEeec
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL---FVDM-------TESTDGKYLVLPS-----GELHIRDV  135 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l---~~~~-------~~~~~~r~~~~~~-----g~L~I~~v  135 (167)
                      +.+..+.+|++|.|+|.+.+. ..+.+.+.|+|++ +...   ....       .+...+|+.+..+     ..|.|+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~-~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   85 (210)
T 3d9a_H            7 SGPSLVKPSQTLSLTCSVTGD-SITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSV   85 (210)
T ss_dssp             ESCSEECTTSCEEEEEEEESS-CGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEecCCCcEEEEEEEecc-cCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCC
Confidence            445678899999999999753 1134789999863 1121   1000       0012467776532     28999999


Q ss_pred             CcCCCCcceEEEeeecC--cceEEEeee
Q psy12724        136 GPEDGYKSYQCRTKHRL--TGETRLSAT  161 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n~~--~~~~~l~~~  161 (167)
                      +.+|+ |.|.|.|.|..  ...+.|.+.
T Consensus        86 ~~~D~-G~Y~C~~~~~~~~~~~~~l~V~  112 (210)
T 3d9a_H           86 TTEDT-ATYYCANWDGDYWGQGTLVTVS  112 (210)
T ss_dssp             CGGGC-EEEEEEETTSSCBCCCEEEEEC
T ss_pred             CcccC-EEEEEEEecCcccccceEEEec
Confidence            99999 99999999863  334566554

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=99.02  E-value=8.5e-10  Score=75.81  Aligned_cols=76  Identities=24%  Similarity=0.368  Sum_probs=52.1

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeEEeeeecCCceEEEcc-----CCeEEEeecCcCCCCcceE
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELFVDMTESTDGKYLVLP-----SGELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~~~~~~~~~~r~~~~~-----~g~L~I~~v~~~D~~G~Y~  145 (167)
                      +.+..+.+|++|+|+|.+.+. ..+.+.+.|+|+. +.......  ..++|+.+..     +..|.|++++.+|+ |.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~-~~~~~~v~W~r~~~g~~~~~~~--~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds-G~Y~   82 (113)
T 1sq2_N            7 PRSVTKETGESLTINCVLRDA-SYALGSTCWYRKKSGEGNEESI--SKGGRYVETVNSGSKSFSLRINDLTVEDG-GTYR   82 (113)
T ss_dssp             CSEEEECTTCCEEEEEEECSC-SSCCCCEEEEEEETTSCCCEEC--CCBTTEEEEEETTTTEEEEEECSCCGGGC-EEEE
T ss_pred             CccEEEecCCCEEEEEEECCC-cCCCCEEEEEEeCCCCCceEeE--EeCCCEEEEEeCCCCEEEEEECCCChhhC-EEEE
Confidence            344678899999999999743 1125679999863 11111011  1346776542     23699999999999 9999


Q ss_pred             EEeeec
Q psy12724        146 CRTKHR  151 (167)
Q Consensus       146 C~a~n~  151 (167)
                      |.+.|.
T Consensus        83 C~~~~~   88 (113)
T 1sq2_N           83 CGLGVA   88 (113)
T ss_dssp             EEECBT
T ss_pred             EEEEeC
Confidence            999983

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.02  E-value=1.2e-09  Score=92.83  Aligned_cols=68  Identities=16%  Similarity=0.199  Sum_probs=46.9

Q ss_pred             eCCcEEEEeeeCCccCCc-ceeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADY-VAVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p-~p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +|+++.|.|.+.+.  .| ...|+|+||+ ..+....     ..+.++.|.+  ...|.|..+..+|. |.|+|.|.|..
T Consensus       311 ~g~~~~L~C~v~g~--~P~~~~i~W~k~g-~~~~~~~~~~~~~~~~~gt~~~--~s~L~i~~~~~~d~-g~y~C~a~n~~  384 (512)
T 1zvo_C          311 LRDKATFTCFVVGS--DLKDAHLTWEVAG-KVPTGGVEEGLLERHSNGSQSQ--HSRLTLPRSLWNAG-TSVTCTLNHPS  384 (512)
T ss_pred             cCCceEEEEEEece--ECCCeEEEEEECC-EeccCceeccceecCCCCeEEE--EEEEEEchHHhcCC-CeEEEEEEeCC
Confidence            59999999999864  24 3489999998 3432110     0011223322  23599999999998 99999999986

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.02  E-value=5.7e-10  Score=81.16  Aligned_cols=75  Identities=17%  Similarity=0.312  Sum_probs=55.3

Q ss_pred             EEEecCeEEEeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEE
Q psy12724         69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        69 ~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~  147 (167)
                      ...+.+..+.+|+++.|.|.+.+   .|.| .++|+|++ ..+.       .      .++.|.|.+++.+|+ |.|+|.
T Consensus         8 ~~~p~~~~v~~G~~v~L~C~~~~---~~~~~~i~W~~~~-~~~~-------~------~~~~L~i~~v~~~d~-G~Y~C~   69 (176)
T 1f2q_A            8 SLNPPWNRIFKGENVTLTCNGNN---FFEVSSTKWFHNG-SLSE-------E------TNSSLNIVNAKFEDS-GEYKCQ   69 (176)
T ss_dssp             EEESSCSEEETTCCEEEECCTTC---C----CCEEEETT-EECS-------C------CSSEEEECSCCGGGC-EEEEEE
T ss_pred             EcCCCCcceecCCcEEEEEeCCC---CCCcceEEEEECC-eECC-------C------CceEEEEeccceecC-EEEEEE
Confidence            33445568899999999999974   3654 58999997 3431       1      267899999999999 999999


Q ss_pred             eeecC-cceEEEeee
Q psy12724        148 TKHRL-TGETRLSAT  161 (167)
Q Consensus       148 a~n~~-~~~~~l~~~  161 (167)
                      |.|.. +..+.|.+.
T Consensus        70 ~~~~~~s~~~~l~V~   84 (176)
T 1f2q_A           70 HQQVNESEPVYLEVF   84 (176)
T ss_dssp             CTTSSCCCCEEEEEE
T ss_pred             cCCccccccEEEEEe
Confidence            99976 455555554

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.02  E-value=5.1e-10  Score=82.74  Aligned_cols=58  Identities=26%  Similarity=0.363  Sum_probs=47.0

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEee-cCcCCCCcceEEEeeecC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRD-VGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~-v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+..|+++.|.|.+.+    |.+ ++|+||+ ..+.      ..      .++.|.|.+ ++.+|+ |.|+|.|.|..
T Consensus        10 v~~~G~~v~L~C~~~~----~~~-i~W~k~g-~~l~------~~------~~~~L~I~~~~~~~D~-G~Y~C~a~n~~   68 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS----DEN-LKWEKNG-QELP------QK------HDKHLVLQDFSEVEDS-GYYVCYTPASN   68 (186)
T ss_dssp             EEEETTEEEEECSSCC----CTT-CEEEETT-EEEC------SC------CCSEEEEESCCTTTSC-EEEEEECSSCC
T ss_pred             EEeCCcEEEEEEeCCC----CCc-eEEEECC-EECC------CC------CCCEEEECCCCccccC-EEEEEEEEeCC
Confidence            4578999999999973    333 8999997 4552      11      356899999 999999 99999999985

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=99.02  E-value=5.7e-10  Score=77.27  Aligned_cols=77  Identities=32%  Similarity=0.493  Sum_probs=52.3

Q ss_pred             cCeEEEeCCcEEEEeeeCCccC-CcceeEEEEeCC---CeeeEEeeeecCCceEEEccC--------CeEEEeecCcCCC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVA-DYVAVESWISDQ---GEELFVDMTESTDGKYLVLPS--------GELHIRDVGPEDG  140 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~-~p~p~i~W~k~~---~~~l~~~~~~~~~~r~~~~~~--------g~L~I~~v~~~D~  140 (167)
                      ....+.+|++|.|+|.+.+... .+.+.+.|+|+.   +..+.. ......+|+....+        ..|.|++++.+|+
T Consensus        15 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~g~~~~~-~~~~~~~R~~~~~~~~~~~~~~~sL~I~~v~~~Ds   93 (120)
T 3noi_A           15 PEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRN-GTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDA   93 (120)
T ss_dssp             SEEEEETTSCEEECCEECCCTTSCCCEEEEEEESSCSTTCBCCT-TCTTTTTCEECCCHHHHHTTCBCCEEESSCCGGGC
T ss_pred             CEEEEEcCCCEEEEeeecCCCCCCceeEEEEEeccCCCCceecc-cccccCCcEEeecccccccCCcEEEEEecCChhhC
Confidence            3467889999999999864311 125679999975   233211 00113467765422        2799999999999


Q ss_pred             CcceEEEeeec
Q psy12724        141 YKSYQCRTKHR  151 (167)
Q Consensus       141 ~G~Y~C~a~n~  151 (167)
                       |.|.|.+...
T Consensus        94 -G~Y~C~v~~~  103 (120)
T 3noi_A           94 -SIYVCRVEVL  103 (120)
T ss_dssp             -EEEEEEEEET
T ss_pred             -EEEEEEEEEC
Confidence             9999999854

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=99.02  E-value=1.2e-09  Score=74.51  Aligned_cols=75  Identities=20%  Similarity=0.317  Sum_probs=51.9

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCc----ceeEEEEeCC-Ce-e--eEEe---eeecCCceEEEccC---CeEEEeecCcC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADY----VAVESWISDQ-GE-E--LFVD---MTESTDGKYLVLPS---GELHIRDVGPE  138 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p----~p~i~W~k~~-~~-~--l~~~---~~~~~~~r~~~~~~---g~L~I~~v~~~  138 (167)
                      .+..+.+|++|+|+|.+.+.   +    .+.+.|+|+. +. +  +...   ..+...+|+.+..+   ..|.|++++.+
T Consensus         9 ~~~~~~~G~~v~L~C~~~~~---~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   85 (111)
T 1j05_L            9 ASLAVSLGQRATMSCRAGES---VDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEAD   85 (111)
T ss_dssp             SEEECCTTSCEEEEEEESSC---CEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CEEEEeCCCCEEEEeecCCC---cccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEccCCEEEEEECCCCcc
Confidence            34567899999999999743   4    5779999863 11 1  1110   00012457766532   26999999999


Q ss_pred             CCCcceEEEeeec
Q psy12724        139 DGYKSYQCRTKHR  151 (167)
Q Consensus       139 D~~G~Y~C~a~n~  151 (167)
                      |+ |.|.|.+.|.
T Consensus        86 Ds-G~Y~C~~~~~   97 (111)
T 1j05_L           86 DV-ATYYCQQTNE   97 (111)
T ss_dssp             GC-EEEEEEECSS
T ss_pred             cC-EEEEEEEecC
Confidence            99 9999999986

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=99.02  E-value=1.9e-09  Score=73.21  Aligned_cols=76  Identities=13%  Similarity=0.260  Sum_probs=51.9

Q ss_pred             ecCeEEEeCCcEEEEee-eCCccCCc-ceeEEEEeCCCeee-EEee----eecCCceEEEc--cC---CeEEEeecCcCC
Q psy12724         72 IMDEHVLKGNSAVLKCH-IPSFVADY-VAVESWISDQGEEL-FVDM----TESTDGKYLVL--PS---GELHIRDVGPED  139 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~-~~~~~~~p-~p~i~W~k~~~~~l-~~~~----~~~~~~r~~~~--~~---g~L~I~~v~~~D  139 (167)
                      +.+..+.+|++|+|+|. +.+.   + .+.+.|+|.+..+. .-..    .+...+|+.+.  .+   ..|.|++++.+|
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~---~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   83 (109)
T 1pew_A            7 PHSVSESPGKTVTISCTRSSGN---IASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTED   83 (109)
T ss_dssp             CSEEEECTTSCEEEEEEESSSC---GGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CCCEEEcCCCCEEEEEEeCCCC---CCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCChhh
Confidence            34567889999999999 7643   3 47899999762111 1000    00113677765  22   269999999999


Q ss_pred             CCcceEEEeeec
Q psy12724        140 GYKSYQCRTKHR  151 (167)
Q Consensus       140 ~~G~Y~C~a~n~  151 (167)
                      + |.|.|.+.|.
T Consensus        84 s-G~Y~C~~~~~   94 (109)
T 1pew_A           84 E-ADYYCQSYDA   94 (109)
T ss_dssp             C-EEEEEEEEET
T ss_pred             C-EEEEEEEEeC
Confidence            9 9999999985

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.01  E-value=6.4e-10  Score=83.84  Aligned_cols=85  Identities=16%  Similarity=0.308  Sum_probs=58.0

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee--eEEee----eecCCceEEEc---cCCeEEEeecCcCCCC
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE--LFVDM----TESTDGKYLVL---PSGELHIRDVGPEDGY  141 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~--l~~~~----~~~~~~r~~~~---~~g~L~I~~v~~~D~~  141 (167)
                      +.+..+.+|+++.|+|.+.+   .|.+.+.|+|++ +..  +....    .....+||.+.   .++.|.|++++.+|+ 
T Consensus        31 p~~~~v~~G~~v~L~C~~~~---~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~-  106 (237)
T 3sob_L           31 PSSLSASVGDRVTITCRASQ---DVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDF-  106 (237)
T ss_dssp             CSEEEEETTCCEEEEEEESS---CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-
T ss_pred             CCeEEEeCCCcEEEEEecCC---CCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhC-
Confidence            34568889999999999984   478899999843 111  11000    00124577655   344799999999999 


Q ss_pred             cceEEEeeecC----cceEEEee
Q psy12724        142 KSYQCRTKHRL----TGETRLSA  160 (167)
Q Consensus       142 G~Y~C~a~n~~----~~~~~l~~  160 (167)
                      |.|+|.+.|..    ...+.|.+
T Consensus       107 G~Y~C~~~~~~~~~~~~~~~l~V  129 (237)
T 3sob_L          107 ATYYCQQSYTTPPTFGQGTKVEI  129 (237)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEE
T ss_pred             eEEEEeeccCCceEEcCcEEEEE
Confidence            99999998854    34445554

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.01  E-value=9.2e-10  Score=84.11  Aligned_cols=85  Identities=19%  Similarity=0.353  Sum_probs=57.6

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-eee--EEee----eecCCceEEEccCC---eEEEeecCcCCCCc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-EEL--FVDM----TESTDGKYLVLPSG---ELHIRDVGPEDGYK  142 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~~l--~~~~----~~~~~~r~~~~~~g---~L~I~~v~~~D~~G  142 (167)
                      .+..+.+|++|+|+|.+.+   .|.|.+.|+|++. ...  .-..    .....+||.+..++   .|.|++++.+|+ |
T Consensus        12 ~~~~v~~G~~v~L~C~~~~---~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~-G   87 (250)
T 3esu_F           12 SSLSASLGDRVTISCRASQ---DIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDI-G   87 (250)
T ss_dssp             SEEEECTTCCEEEEEEESS---CCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-E
T ss_pred             CEEEeeCCCcEEEEEEecc---cCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhC-E
Confidence            3456789999999999984   4788999998531 111  0000    00123567554433   799999999999 9


Q ss_pred             ceEEEeeecC----cceEEEeee
Q psy12724        143 SYQCRTKHRL----TGETRLSAT  161 (167)
Q Consensus       143 ~Y~C~a~n~~----~~~~~l~~~  161 (167)
                      .|.|.|.|..    +..+.|.+.
T Consensus        88 ~Y~C~~~n~~~~~~~~~~~l~V~  110 (250)
T 3esu_F           88 TYFCQQGNTLPWTFGGGTKLEIR  110 (250)
T ss_dssp             EEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEEEeeCCCceECCCEEEEEE
Confidence            9999999863    344455553

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.01  E-value=2.2e-10  Score=84.92  Aligned_cols=77  Identities=14%  Similarity=0.162  Sum_probs=54.7

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC--
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL--  152 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~--  152 (167)
                      ..+.+|++++|.|.+.+   .|. .++|+|++ ..+...    ...+.....++.|.|.+++.+|+ |.|+|.|.|..  
T Consensus        14 ~~v~~G~~v~L~C~~~~---~~~-~~~W~k~g-~~~~~~----~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~a~n~~~g   83 (198)
T 1ugn_A           14 SVITQGSPVTLRCQGGQ---ETQ-EYRLYREK-KTAPWI----TRIPQELVKKGQFPIPSITWEHT-GRYRCYYGSDTAG   83 (198)
T ss_dssp             SEEETTCCEEEEEECCT---TCC-CEEEEESS-SCCHHH----HTSCHHHHTTTEEEESSCCGGGC-EEEEEEEEETTTE
T ss_pred             CcccCCCcEEEEEEecC---CCc-EEEEEECC-cccccc----ccccccCCcccEEEECCCCHHHC-eEEEEEEECCCCC
Confidence            47889999999999975   354 58999997 344210    11111123567899999999999 99999999964  


Q ss_pred             ----cceEEEeee
Q psy12724        153 ----TGETRLSAT  161 (167)
Q Consensus       153 ----~~~~~l~~~  161 (167)
                          +..+.|.+.
T Consensus        84 ~~~~s~~~~l~V~   96 (198)
T 1ugn_A           84 RSESSDPLELVVT   96 (198)
T ss_dssp             ECCCCCCEEEEEE
T ss_pred             cccCCccEEEEEc
Confidence                334555554

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.01  E-value=8.1e-10  Score=86.29  Aligned_cols=86  Identities=17%  Similarity=0.315  Sum_probs=58.9

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-e---eeEEe---eeecCCceEEEccCC---eEEEeecCcCCCC
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-E---ELFVD---MTESTDGKYLVLPSG---ELHIRDVGPEDGY  141 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~---~l~~~---~~~~~~~r~~~~~~g---~L~I~~v~~~D~~  141 (167)
                      +.+..+.+|++|+|+|.+.+   .|.|.+.|+|++. .   .+...   ......+||.+..++   .|.|++++.+|+ 
T Consensus        19 p~~~~v~~G~~v~L~C~~~~---~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds-   94 (276)
T 3auv_A           19 PSSLSASVGDRVTITCRASQ---DVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDF-   94 (276)
T ss_dssp             CSEEECCTTCCEEEEEEESS---CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-
T ss_pred             CCeEEEcCCCCEEEEeEcCC---CCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhC-
Confidence            44567889999999999974   4788999998642 1   11100   000124577766443   799999999999 


Q ss_pred             cceEEEeeecC----cceEEEeee
Q psy12724        142 KSYQCRTKHRL----TGETRLSAT  161 (167)
Q Consensus       142 G~Y~C~a~n~~----~~~~~l~~~  161 (167)
                      |.|.|.|.|..    +..+.|.+.
T Consensus        95 G~Y~C~~~n~~~~~~~~~~~l~V~  118 (276)
T 3auv_A           95 ATYYCQQHYTTPPTFGCGTKVEIK  118 (276)
T ss_dssp             EEEEEEECSSSSCCCCCCEEEEC-
T ss_pred             EEEEEEEecCCcccccCCEEEEEe
Confidence            99999999963    334555553

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=98.57  E-value=3.3e-11  Score=82.41  Aligned_cols=75  Identities=24%  Similarity=0.461  Sum_probs=53.1

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-ee---eEEeee---ecCCceEEEcc-----CCeEEEeecCcCCC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-EE---LFVDMT---ESTDGKYLVLP-----SGELHIRDVGPEDG  140 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~~---l~~~~~---~~~~~r~~~~~-----~g~L~I~~v~~~D~  140 (167)
                      .+..+.+|++|+|+|.+.+   .+.+.+.|+|++. ..   +.....   ....+|+.+..     +..|.|++++.+|+
T Consensus         7 ~~v~v~~G~~v~L~C~~~~---~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~Ds   83 (110)
T 1u3h_A            7 QSLTVWEGETAILNCSYEN---SAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDS   83 (110)
Confidence            4567889999999999974   3677899998641 11   110000   01346776653     24799999999999


Q ss_pred             CcceEEEeeec
Q psy12724        141 YKSYQCRTKHR  151 (167)
Q Consensus       141 ~G~Y~C~a~n~  151 (167)
                       |.|.|.+.|.
T Consensus        84 -G~Y~C~~~~~   93 (110)
T 1u3h_A           84 -ATYFCAASAN   93 (110)
Confidence             9999999986

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.01  E-value=5.4e-10  Score=83.17  Aligned_cols=68  Identities=10%  Similarity=0.043  Sum_probs=49.6

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE-ccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV-LPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~-~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      ..+.+|++++|.|.+.+    |.+.++|+|++ ..+.+..   ...++.. ..++.|.|.+++.+|+ |.|+|.|.|.
T Consensus        17 ~~v~~G~~v~L~C~~~~----~~~~~~w~k~g-~~~~~~~---~~~~~~~~~~~~~l~I~~v~~~D~-G~Y~C~a~~~   85 (201)
T 1nkr_A           17 PLVKSEETVILQCWSDV----MFEHFLLHREG-MFNDTLR---LIGEHHDGVSKANFSISRMTQDLA-GTYRCYGSVT   85 (201)
T ss_dssp             SEEETTCCEEEEEEESS----CCSEEEEEEES-SSCEEEE---EECEEETTEEEEEEEESSCCGGGC-EEEEEEEEBT
T ss_pred             CccCCCCcEEEEEeccC----CCCEEEEEECC-CcCCcce---eeeecCCCCceEEEEeccCCcccC-eEEEEeEecC
Confidence            56789999999999962    67789999997 3443211   0111111 1356899999999999 9999999864

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.01  E-value=6.4e-09  Score=79.24  Aligned_cols=130  Identities=14%  Similarity=0.177  Sum_probs=81.9

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cc---eee-----------e-cCCc------------eE--
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GG---QYQ-----------I-DNQD------------FV--   63 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~---~~~-----------~-~~~~------------~v--   63 (167)
                      ...|..+.+.+|+++.|.|.+.+...+ .+.+.|+|.+ ++   .+.           . ...|            .+  
T Consensus         5 ~q~p~~v~~~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (230)
T 1ypz_F            5 EQPEISISRPRDETAQISCKVFIESFR-SVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI   83 (230)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGGG-GCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred             cccCCEEEEeCCCcEEEEEEeeccccC-ccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence            445778999999999999999875211 2469998753 21   110           0 0011            11  


Q ss_pred             ------EEeeeEEEecCe--------------EEE-------------------------eCCcEEEEeeeCCccCCcc-
Q psy12724         64 ------VSQSYTVNIMDE--------------HVL-------------------------KGNSAVLKCHIPSFVADYV-   97 (167)
Q Consensus        64 ------~~g~y~c~~~~~--------------~v~-------------------------~G~~a~l~C~~~~~~~~p~-   97 (167)
                            .+|.|.|.+.+.              .|.                         .|+.+.|.|.+.++  .|. 
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~--~P~~  161 (230)
T 1ypz_F           84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAF--FPDV  161 (230)
T ss_dssp             CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEE--SSCC
T ss_pred             CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeee--cCCC
Confidence                  169999987531              121                         26789999999754  254 


Q ss_pred             eeEEEEe-CCCeeeEEee---eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         98 AVESWIS-DQGEELFVDM---TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        98 p~i~W~k-~~~~~l~~~~---~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.++|+| |+ ..+....   ....++.|.+.  ..|.|.+... |  |.|+|.|.|..
T Consensus       162 ~~v~W~~~~g-~~l~~~~~~~~~~~~~~~~~~--s~L~i~~~~~-~--~~ytC~v~~~~  214 (230)
T 1ypz_F          162 IRVYWKEKDG-NTILDSQEGDTLKTNDTYMKF--SWLTVPERAM-G--KEHRCIVKHEN  214 (230)
T ss_dssp             CEEEEECTTS-SCBCCCEECCCEEETTEEEEE--EEEEECGGGT-T--SCEEEEEECSS
T ss_pred             eEEEEEccCC-eEccccccceeecCCCCEEEE--EEEEEEhhhC-C--CEEEEEEEECC
Confidence            5899999 55 4442111   00123444332  3699998886 4  89999999986

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.01  E-value=1.5e-09  Score=82.86  Aligned_cols=86  Identities=20%  Similarity=0.250  Sum_probs=58.0

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCc-----ceeEEEEeCC-Ceee--EEee----eecCCceEEEccC---CeEEEeecC
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADY-----VAVESWISDQ-GEEL--FVDM----TESTDGKYLVLPS---GELHIRDVG  136 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p-----~p~i~W~k~~-~~~l--~~~~----~~~~~~r~~~~~~---g~L~I~~v~  136 (167)
                      +.+..+.+|++|+|+|.+.+.   |     .+.+.|+|++ +..+  ....    .....+|+.+..+   ..|.|++++
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~---~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   84 (247)
T 1svz_A            8 PLYLPVSLGDQASISCRSSQT---IVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVE   84 (247)
T ss_dssp             CSEEEECTTCCEEEEEEESSC---CBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             CCeEEecCCCCEEEEEeCCCc---ccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCC
Confidence            345678899999999999753   5     5889999853 1111  1100    0011457766533   279999999


Q ss_pred             cCCCCcceEEEeeecC----cceEEEeee
Q psy12724        137 PEDGYKSYQCRTKHRL----TGETRLSAT  161 (167)
Q Consensus       137 ~~D~~G~Y~C~a~n~~----~~~~~l~~~  161 (167)
                      .+|+ |.|.|.|.|..    +..+.|.+.
T Consensus        85 ~~D~-G~Y~C~~~n~~~~~~~~~~~l~V~  112 (247)
T 1svz_A           85 AEDL-GIYYCFQGSHFPPTFGGGTKLEIK  112 (247)
T ss_dssp             GGGC-EEEEEEECSSSSCEECCCEEEEEC
T ss_pred             HHHC-EEEEEEEccCCccEECCCEEEEEE
Confidence            9999 99999999973    334555553

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.00  E-value=9.2e-10  Score=81.98  Aligned_cols=85  Identities=16%  Similarity=0.214  Sum_probs=57.5

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCc---ceeEEEEeCC-CeeeEE-ee-----eecCCceEEEccCC---eEEEeecCcC
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADY---VAVESWISDQ-GEELFV-DM-----TESTDGKYLVLPSG---ELHIRDVGPE  138 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p---~p~i~W~k~~-~~~l~~-~~-----~~~~~~r~~~~~~g---~L~I~~v~~~  138 (167)
                      +.+..+.+|++|.|+|.+.+.   |   .|.++|+|++ +..+.. .+     .....+|+.+..++   .|.|.+++.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~---~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   83 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTG---AVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTE   83 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSS---CCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCeEeecCCCCEEEEEEeccc---ccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCcc
Confidence            455678899999999999753   4   4789999863 122110 00     00123567655432   7999999999


Q ss_pred             CCCcceEEEeeecC----cceEEEee
Q psy12724        139 DGYKSYQCRTKHRL----TGETRLSA  160 (167)
Q Consensus       139 D~~G~Y~C~a~n~~----~~~~~l~~  160 (167)
                      |+ |.|.|.|.|..    +..+.|.+
T Consensus        84 D~-G~Y~C~~~~~~~~~~~~~~~l~V  108 (212)
T 1q0x_L           84 DE-AIYFCALWSNNKLVFGGGTKLTV  108 (212)
T ss_dssp             GC-EEEEEEEECSSCEEECCCEEEEE
T ss_pred             CC-EEEEEEEecCchhhcCCCeEEEE
Confidence            99 99999999975    23345554

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.00  E-value=1.8e-09  Score=82.94  Aligned_cols=89  Identities=20%  Similarity=0.247  Sum_probs=59.1

Q ss_pred             EecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeC-CCeeeEE-----------eeeecCCceEEEccCC-----eEEEe
Q psy12724         71 NIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISD-QGEELFV-----------DMTESTDGKYLVLPSG-----ELHIR  133 (167)
Q Consensus        71 ~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~-~~~~l~~-----------~~~~~~~~r~~~~~~g-----~L~I~  133 (167)
                      .+.+..+.+|++|+|+|.+.+. ..+.+.+.|+|. .+..+..           ...+...+|+.+..++     .|.|+
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~g~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   85 (253)
T 3uzq_A            7 QSGAELVKPGASVRLSCTASGF-NIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLS   85 (253)
T ss_dssp             ECCCEEECTTCCEEEEEEECSS-CGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             cCCCeeecCCCcEEEEEEeeCC-cccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeC
Confidence            3456778899999999999753 124778999983 2112110           0001123577766433     39999


Q ss_pred             ecCcCCCCcceEEEeeecC----cceEEEeee
Q psy12724        134 DVGPEDGYKSYQCRTKHRL----TGETRLSAT  161 (167)
Q Consensus       134 ~v~~~D~~G~Y~C~a~n~~----~~~~~l~~~  161 (167)
                      +++.+|+ |.|.|.|.|..    ...+.|.+.
T Consensus        86 ~v~~~Ds-G~Y~C~~~~~~~~~~~~~~~l~V~  116 (253)
T 3uzq_A           86 SLTSGDT-AVYYCSRGWEGFAYWGQGTLVTVS  116 (253)
T ss_dssp             SCCGGGC-EEEEEEECSSSCCEECCCEEEEEC
T ss_pred             CCCcccC-EEEEEEEeeCCccEECCCcEEEEe
Confidence            9999999 99999999843    334555554

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=99.00  E-value=2e-09  Score=73.96  Aligned_cols=87  Identities=15%  Similarity=0.199  Sum_probs=56.1

Q ss_pred             CeEEEeCCcEEEEeeeCCc-cCCcceeEEEEeCCCe---e--eEEee--------eecCCceEEEc-----cCCeEEEee
Q psy12724         74 DEHVLKGNSAVLKCHIPSF-VADYVAVESWISDQGE---E--LFVDM--------TESTDGKYLVL-----PSGELHIRD  134 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~-~~~p~p~i~W~k~~~~---~--l~~~~--------~~~~~~r~~~~-----~~g~L~I~~  134 (167)
                      ...+.+|++|.|+|.+... .+.+.+.+.|+|++..   .  +....        .+...+|+.+.     .++.|.|++
T Consensus         8 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   87 (124)
T 1neu_A            8 EVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHN   87 (124)
T ss_dssp             EEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECS
T ss_pred             eEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEEEEcc
Confidence            4578899999999997421 1225678999986421   1  21110        00114677664     246899999


Q ss_pred             cCcCCCCcceEEEeeecC-----cceEEEeee
Q psy12724        135 VGPEDGYKSYQCRTKHRL-----TGETRLSAT  161 (167)
Q Consensus       135 v~~~D~~G~Y~C~a~n~~-----~~~~~l~~~  161 (167)
                      ++.+|+ |.|.|.+.|..     ...+.|.+.
T Consensus        88 v~~~D~-G~Y~C~v~~~~~~~~~~~~v~L~V~  118 (124)
T 1neu_A           88 LDYSDN-GTFTCDVKNPPDIVGKTSQVTLYVF  118 (124)
T ss_dssp             CCGGGC-EEEEEEEEC----CCEEEEEEEEEE
T ss_pred             CChhhC-EEEEEEEEcCCCCcCcEeeEEEEEe
Confidence            999999 99999999864     234556553

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.00  E-value=1.1e-09  Score=83.82  Aligned_cols=85  Identities=22%  Similarity=0.261  Sum_probs=58.2

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-ee--eEEee----eecCCceEEEccC---CeEEEeecCcCCCC
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-EE--LFVDM----TESTDGKYLVLPS---GELHIRDVGPEDGY  141 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~~--l~~~~----~~~~~~r~~~~~~---g~L~I~~v~~~D~~  141 (167)
                      +.+..+.+|++|+|+|.+.+   .|.|.+.|+|++. ..  +.-..    .....+|+.+..+   ..|.|.+++.+|+ 
T Consensus         8 p~~~~v~~G~~v~L~C~~~~---~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~-   83 (242)
T 2znx_A            8 PATLSVTPGNSVSLSCRASQ---SIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF-   83 (242)
T ss_dssp             CSEEEECTTCCEEEEEEESS---CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC-
T ss_pred             CCeEEEcCCCcEEEEEEeCC---CCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHC-
Confidence            44567889999999999974   4788999998531 11  11000    0012457766532   3799999999999 


Q ss_pred             cceEEEeeecC----cceEEEee
Q psy12724        142 KSYQCRTKHRL----TGETRLSA  160 (167)
Q Consensus       142 G~Y~C~a~n~~----~~~~~l~~  160 (167)
                      |.|.|.|.|..    +..+.|.+
T Consensus        84 G~Y~C~~~n~~~~~~~~~~~L~V  106 (242)
T 2znx_A           84 GMYFCQQSNSXPYTFGGGTKLEI  106 (242)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEE
T ss_pred             EEEEEeEecCCceEECCCEEEEE
Confidence            99999999974    23445554

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.00  E-value=1.5e-09  Score=83.49  Aligned_cols=78  Identities=18%  Similarity=0.253  Sum_probs=54.1

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee--eEEee--------eecCCceEEEccCC-----eEEEeec
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE--LFVDM--------TESTDGKYLVLPSG-----ELHIRDV  135 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~--l~~~~--------~~~~~~r~~~~~~g-----~L~I~~v  135 (167)
                      +.+..+.+|++|+|.|.+.+. ..|.+.+.|+|.. +..  +....        .+...+|+.+..++     .|.|+++
T Consensus        15 p~~~~v~~G~~v~L~C~~~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   93 (257)
T 3gkz_A           15 SGPSLVKPSQTLSLTCSVTGD-SVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSV   93 (257)
T ss_dssp             ECCSEECTTCCEEEEEEEEES-CCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCeEEcCCCcEEEEEEEEcc-cccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCC
Confidence            345678899999999999753 1257889999842 111  11000        01123577766433     6999999


Q ss_pred             CcCCCCcceEEEeeec
Q psy12724        136 GPEDGYKSYQCRTKHR  151 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n~  151 (167)
                      +.+|+ |.|.|.|.|.
T Consensus        94 ~~~Ds-G~Y~C~~~n~  108 (257)
T 3gkz_A           94 SSEDT-ATYYCSYFDS  108 (257)
T ss_dssp             CGGGC-EEEEEEEECT
T ss_pred             ChhhC-EEEEEEEecC
Confidence            99999 9999999997

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=1.3e-09  Score=76.90  Aligned_cols=75  Identities=23%  Similarity=0.395  Sum_probs=50.8

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCee--eEEeeeecCCceEEEcc--------CCeEEEeecCcCCCCcc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEE--LFVDMTESTDGKYLVLP--------SGELHIRDVGPEDGYKS  143 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~--l~~~~~~~~~~r~~~~~--------~g~L~I~~v~~~D~~G~  143 (167)
                      +..+.+|++|+|+|.+.+.  .|.+.+.|+|+++..  +.........+|+....        +..|.|++++.+|+ |.
T Consensus        17 ~~~v~~G~~v~L~C~~~~~--~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~Ds-G~   93 (136)
T 2d9c_A           17 SVSVAAGESATLRCAMTSL--IPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADA-GT   93 (136)
T ss_dssp             EEEEETTSCEEECCEESCC--CSCCCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCTTTC-EE
T ss_pred             EEEEcCCCCEEEEEEEcCC--CCCceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCHHHC-EE
Confidence            4678899999999999742  245689999986322  21111000013443221        34799999999999 99


Q ss_pred             eEEEeeec
Q psy12724        144 YQCRTKHR  151 (167)
Q Consensus       144 Y~C~a~n~  151 (167)
                      |.|.+.|.
T Consensus        94 Y~C~~~~~  101 (136)
T 2d9c_A           94 YYCVKFRK  101 (136)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEeC
Confidence            99999875

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.00  E-value=1.5e-09  Score=80.21  Aligned_cols=79  Identities=24%  Similarity=0.381  Sum_probs=55.9

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEE-----eecCcCCCCc
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHI-----RDVGPEDGYK  142 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I-----~~v~~~D~~G  142 (167)
                      +.-.+.+..+.+|+++.|.|.+.+   .|.|.++|+|++ ..+.... .....+.....+|.+.+     .+++.+|+ |
T Consensus        12 i~~~p~~~~v~~G~~v~l~C~~~~---~p~~~v~W~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~-G   85 (212)
T 2v9r_A           12 IVEHPSDLIVSKGEPATLNCKAEG---RPTPTIEWYKGG-ERVETDK-DDPRSHRMLLPSGSLFFLRIVHGRKSRPDE-G   85 (212)
T ss_dssp             EEECCCCEEECTTCCEEECCEEEE---ESCCEEEEEETT-EECCCTT-TCTTCSEEECTTSCEEESSCCCCSSCCCSC-E
T ss_pred             eecCCCceEEeCCCcEEEEEEcCC---CCCCEEEEEECC-EEeeccc-cccccceEEecCCcEEEEEEEecCCCcccC-e
Confidence            444456778899999999999974   588899999997 4543210 00112344556666554     45699999 9


Q ss_pred             ceEEEeeecC
Q psy12724        143 SYQCRTKHRL  152 (167)
Q Consensus       143 ~Y~C~a~n~~  152 (167)
                      .|+|.|.|..
T Consensus        86 ~Y~C~~~n~~   95 (212)
T 2v9r_A           86 VYVCVARNYL   95 (212)
T ss_dssp             EEEEEEEETT
T ss_pred             EEEEEEECCC
Confidence            9999999975

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=98.99  E-value=1.7e-09  Score=74.03  Aligned_cols=76  Identities=20%  Similarity=0.279  Sum_probs=52.3

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCc------ceeEEEEeCC-Ce-e--eEEee---eecCCceEEEccCC---eEEEeecC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADY------VAVESWISDQ-GE-E--LFVDM---TESTDGKYLVLPSG---ELHIRDVG  136 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p------~p~i~W~k~~-~~-~--l~~~~---~~~~~~r~~~~~~g---~L~I~~v~  136 (167)
                      .+..+.+|++|.|+|.+.+.   +      .+.+.|+|.. +. +  +....   .+...+|+.+..++   .|.|++++
T Consensus         9 ~~v~v~~G~~v~L~C~~~~~---~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   85 (114)
T 1eeq_A            9 DSLAVSLGERATINCKSSQS---VLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQ   85 (114)
T ss_dssp             SEEEECTTSCEEEEEEESSC---CEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             CeEEEcCCCeEEEEEEcCCC---ccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEeecCCEEEEEECCCC
Confidence            44678899999999999743   3      3789999863 11 1  21100   00124677665322   69999999


Q ss_pred             cCCCCcceEEEeeecC
Q psy12724        137 PEDGYKSYQCRTKHRL  152 (167)
Q Consensus       137 ~~D~~G~Y~C~a~n~~  152 (167)
                      .+|+ |.|.|.+.|..
T Consensus        86 ~~Ds-G~Y~C~~~~~~  100 (114)
T 1eeq_A           86 AEDV-AVYYCQQYYSH  100 (114)
T ss_dssp             GGGC-EEEEEEECSSS
T ss_pred             cccC-EEEEEEEeeCC
Confidence            9999 99999999853

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=98.99  E-value=1.8e-09  Score=75.14  Aligned_cols=75  Identities=19%  Similarity=0.238  Sum_probs=53.3

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-------eecCCceEEEc-cCCeEEEeecCcCCCCcceEE
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-------TESTDGKYLVL-PSGELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-------~~~~~~r~~~~-~~g~L~I~~v~~~D~~G~Y~C  146 (167)
                      ..+.+|++|+|+|....  ..+...+.|+|+....+....       .+.-.+|+.+. .+|.|.|+|++.+|+ |.|.|
T Consensus        14 v~~~~G~~VtL~c~~~~--~~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~~~~~sL~I~nv~~~Ds-G~Y~c   90 (121)
T 2edo_A           14 MTVVSGSNVTLNISESL--PENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDN-STYIM   90 (121)
T ss_dssp             CEEETTSCEEECCSSCC--CSSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEECTTTCCEEESSCCGGGC-SEEEE
T ss_pred             EEEEeCCCEEEeCCCCC--CCceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEeCCCceEEEeCCCHHHC-eEEEE
Confidence            57889999999998731  234678999997632332110       01113466665 678999999999999 99999


Q ss_pred             EeeecC
Q psy12724        147 RTKHRL  152 (167)
Q Consensus       147 ~a~n~~  152 (167)
                      .+.|..
T Consensus        91 ~v~~~~   96 (121)
T 2edo_A           91 RVLKKT   96 (121)
T ss_dssp             EEEETT
T ss_pred             EEEcCC
Confidence            998754

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=98.99  E-value=2.1e-09  Score=75.13  Aligned_cols=86  Identities=19%  Similarity=0.279  Sum_probs=57.8

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCc----ceeEEEEeCCC--ee--eEEe---eeecCCceEEEccC---CeEEEeecCcC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADY----VAVESWISDQG--EE--LFVD---MTESTDGKYLVLPS---GELHIRDVGPE  138 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p----~p~i~W~k~~~--~~--l~~~---~~~~~~~r~~~~~~---g~L~I~~v~~~  138 (167)
                      ....+.+|++|+|+|.+.+.   +    .+.+.|+|...  .+  +...   ..+...+||.+..+   ..|.|++++.+
T Consensus         9 ~~v~v~~G~~v~L~C~~~~~---~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~sL~I~~v~~~   85 (126)
T 4ffy_L            9 ASLAVSLGQRATISCRASES---VDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDSVETD   85 (126)
T ss_dssp             SEEEEETTSCEEEEEEESSC---CEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CeEEEeCCCCEEEEEecCCC---cccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecCCCEEEEEECCCCHH
Confidence            34678899999999999743   4    56789998531  11  1110   00112456765432   26999999999


Q ss_pred             CCCcceEEEeeecC----cceEEEeeeC
Q psy12724        139 DGYKSYQCRTKHRL----TGETRLSATK  162 (167)
Q Consensus       139 D~~G~Y~C~a~n~~----~~~~~l~~~~  162 (167)
                      |+ |.|.|.+.|..    ..-++|.+.+
T Consensus        86 Ds-G~Y~C~~~~~~~~~fg~gT~L~V~~  112 (126)
T 4ffy_L           86 DA-ATYYCQQNNEDPYTFGGGTKLEIKG  112 (126)
T ss_dssp             GC-EEEEEEECSSSSCEECCCEEEEEEC
T ss_pred             HC-EEEEEEEecCCCcEECCCEEEEEec
Confidence            99 99999999854    4456776654

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.99  E-value=1.8e-09  Score=79.59  Aligned_cols=78  Identities=17%  Similarity=0.285  Sum_probs=52.6

Q ss_pred             CeEEEeCCcEEEEeeeCCccCC-cceeEEEEeCCCe------eeEEee--------eecCCceEEEcc------CCeEEE
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVAD-YVAVESWISDQGE------ELFVDM--------TESTDGKYLVLP------SGELHI  132 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~-p~p~i~W~k~~~~------~l~~~~--------~~~~~~r~~~~~------~g~L~I  132 (167)
                      ...+.+|+++.|+|.+.+.... ..+.++|+|++..      .+....        .+...+|+.+..      ++.|.|
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i   88 (214)
T 3jz7_A            9 RIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINV   88 (214)
T ss_dssp             EEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEEE
T ss_pred             eEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEEE
Confidence            4567899999999999753110 0468999984311      111000        001245666654      467999


Q ss_pred             eecCcCCCCcceEEEeeecC
Q psy12724        133 RDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       133 ~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+++.+|+ |.|+|.|.|..
T Consensus        89 ~~v~~~D~-G~Y~C~~~~~~  107 (214)
T 3jz7_A           89 TNLQLSDI-GTYQCKVKKAP  107 (214)
T ss_dssp             CSCCGGGC-EEEEEEEEETT
T ss_pred             ccCChhhC-eEEEEEEEeCC
Confidence            99999999 99999999975

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.99  E-value=1.5e-09  Score=84.05  Aligned_cols=78  Identities=19%  Similarity=0.299  Sum_probs=54.3

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEee---------eecCCceEEEccC-----CeEEEee
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVDM---------TESTDGKYLVLPS-----GELHIRD  134 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~~---------~~~~~~r~~~~~~-----g~L~I~~  134 (167)
                      +.+..+.+|++|+|+|.+.+. ..+.+.+.|+|++ +..+  ....         .....+|+.+..+     +.|.|++
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~-~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (256)
T 1nqb_A            7 SGAELVKPGASVKLSCKASGY-TFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSS   85 (256)
T ss_dssp             CCCEEECTTCCEEEEEEECSS-CGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeeecCCCcEEEEEEeccc-cCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECc
Confidence            345678899999999999753 1136789999853 1111  1110         0012467776542     3799999


Q ss_pred             cCcCCCCcceEEEeeec
Q psy12724        135 VGPEDGYKSYQCRTKHR  151 (167)
Q Consensus       135 v~~~D~~G~Y~C~a~n~  151 (167)
                      ++.+|+ |.|.|.|.|.
T Consensus        86 v~~~Ds-G~Y~C~~~n~  101 (256)
T 1nqb_A           86 LTSEDS-AVYYCARYDY  101 (256)
T ss_dssp             CCGGGC-EEEEEEECCT
T ss_pred             CChhhC-EEEEEEEeec
Confidence            999999 9999999997

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.98  E-value=2.3e-09  Score=79.98  Aligned_cols=84  Identities=17%  Similarity=0.232  Sum_probs=54.9

Q ss_pred             eEEEeCCcEEEEeeeCCccC--CcceeEEEEeCCCeeeEEeee---------ecCCceEEEccC------CeEEEeecCc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVA--DYVAVESWISDQGEELFVDMT---------ESTDGKYLVLPS------GELHIRDVGP  137 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~--~p~p~i~W~k~~~~~l~~~~~---------~~~~~r~~~~~~------g~L~I~~v~~  137 (167)
                      ..+.+|+++.|+|.+.+...  ...+.++|+|++ ..+.....         ....+|..+..+      ..|.|.+++.
T Consensus        11 v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~-~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~   89 (222)
T 3sbw_C           11 YVVEYGSNMTIECKFPVEKQLDLAALIVYWEMED-KNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKL   89 (222)
T ss_dssp             EEEETTSCEEEEEECCCCSSCCTTTCEEEEEETT-EEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCCG
T ss_pred             EEEEcCCcEEEEeEecCCCCCCCccEEEEEEECC-cEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCccc
Confidence            46788999999999864310  013489999986 33322110         001256666543      3799999999


Q ss_pred             CCCCcceEEEeeecC--cceEEEee
Q psy12724        138 EDGYKSYQCRTKHRL--TGETRLSA  160 (167)
Q Consensus       138 ~D~~G~Y~C~a~n~~--~~~~~l~~  160 (167)
                      +|+ |.|+|.|.|..  ...+.|.+
T Consensus        90 ~D~-G~Y~C~~~~~~~~~~~~~l~V  113 (222)
T 3sbw_C           90 QDA-GVYRCMISYGGADYKRITVKV  113 (222)
T ss_dssp             GGC-EEEEEEEESSSEEEEEEEEEE
T ss_pred             ccC-eEEEEEEEeCCCceeEEEEEE
Confidence            999 99999999933  23344444

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.98  E-value=8e-10  Score=85.31  Aligned_cols=86  Identities=16%  Similarity=0.178  Sum_probs=58.1

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEee----eecCCceEEEc-----cCCeEEEeecCcCC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDM----TESTDGKYLVL-----PSGELHIRDVGPED  139 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~----~~~~~~r~~~~-----~~g~L~I~~v~~~D  139 (167)
                      .+..+.+|++|+|+|.+.+   .|.|.+.|+|.. +..   +....    .....+||.+.     .++.|.|++++.+|
T Consensus        11 ~~~~v~~G~~v~L~C~~~~---~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D   87 (256)
T 3tf7_C           11 ARVTVSEGASLQLRCKYSY---SATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSD   87 (256)
T ss_dssp             SEEEEETTSCEEECCEEEC---SSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGG
T ss_pred             ceEEecCCCeEEEEEEeCC---CCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCccc
Confidence            4567889999999999974   488899999842 111   11000    00124566652     23469999999999


Q ss_pred             CCcceEEEeeecC-------cceEEEeeeC
Q psy12724        140 GYKSYQCRTKHRL-------TGETRLSATK  162 (167)
Q Consensus       140 ~~G~Y~C~a~n~~-------~~~~~l~~~~  162 (167)
                      + |.|.|.|.|..       ...+.|.+.+
T Consensus        88 s-G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  116 (256)
T 3tf7_C           88 S-AVYFCAVSAKGTGSKLSFGKGAKLTVSP  116 (256)
T ss_dssp             C-SEEEEEEECTTCTTCEEECCCEEEEEEC
T ss_pred             C-EEEEEEEecCCCccceEECCCeEEEEeC
Confidence            9 99999999863       3345666654

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.98  E-value=4.1e-09  Score=82.37  Aligned_cols=75  Identities=16%  Similarity=0.250  Sum_probs=54.1

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-ee---eEEeee--------ecCCceEEEccC----CeEEEeec
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-EE---LFVDMT--------ESTDGKYLVLPS----GELHIRDV  135 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~~---l~~~~~--------~~~~~r~~~~~~----g~L~I~~v  135 (167)
                      +.+..+.+|++|.|+|.+.+   .|.+.++|+|++. ..   +.....        ....+|+.+..+    ..|.|+++
T Consensus        31 p~~v~v~~G~~v~L~C~~~~---~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v  107 (279)
T 2wbj_D           31 PSWVISKSGTSVKIECRSLD---FQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSA  107 (279)
T ss_dssp             CSEEEEETTSCEEEEEEESS---SCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSC
T ss_pred             CCeEEecCCCeEEEEEEeCC---CCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccC
Confidence            45578899999999999964   4788999998641 11   110000        012467777642    37999999


Q ss_pred             CcCCCCcceEEEeee
Q psy12724        136 GPEDGYKSYQCRTKH  150 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n  150 (167)
                      +.+|+ |.|.|.+.|
T Consensus       108 ~~~D~-G~Y~C~~~~  121 (279)
T 2wbj_D          108 HPEDS-SFYICSARD  121 (279)
T ss_dssp             CGGGC-EEEEEEEEE
T ss_pred             CccCC-EEEEEEEcc
Confidence            99999 999999999

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.98  E-value=1.1e-09  Score=81.60  Aligned_cols=75  Identities=16%  Similarity=0.297  Sum_probs=52.8

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeEEee------eecCCceEEEccC---CeEEEeecCcCCCC
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELFVDM------TESTDGKYLVLPS---GELHIRDVGPEDGY  141 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~~~~------~~~~~~r~~~~~~---g~L~I~~v~~~D~~  141 (167)
                      +.+..+.+|++|.|.|.+.+   .|.|.++|+|++ +..+....      .....+|+.+..+   ..|.|.+++.+|+ 
T Consensus         6 p~~~~v~~G~~v~L~C~~~~---~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~-   81 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQ---LPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDE-   81 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETT---GGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGC-
T ss_pred             CCeEEEeCCCcEEEEEecCC---CCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccC-
Confidence            34567889999999999874   477789999853 22221000      0011356766532   3799999999999 


Q ss_pred             cceEEEeee
Q psy12724        142 KSYQCRTKH  150 (167)
Q Consensus       142 G~Y~C~a~n  150 (167)
                      |.|+|.|.|
T Consensus        82 G~Y~C~~~n   90 (212)
T 1nfd_E           82 AAYYCLSSY   90 (212)
T ss_dssp             SEEEEEEEE
T ss_pred             EEEEEEEEc
Confidence            999999997

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.98  E-value=1.5e-09  Score=81.64  Aligned_cols=78  Identities=23%  Similarity=0.349  Sum_probs=53.4

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEee----------eecCCceEEEccC-----CeEEE
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDM----------TESTDGKYLVLPS-----GELHI  132 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~----------~~~~~~r~~~~~~-----g~L~I  132 (167)
                      +.+..+.+|++|.|+|.+.+. ..+.+.+.|+|++ +..   +....          .+...+|+.+..+     +.|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (222)
T 1q9r_B            7 SGGGLVQSGGSLRLSCATSGF-TFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQM   85 (222)
T ss_dssp             ECCCEECTTCCEEEEEEEESS-CGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred             CCceeEcCCCEEEEEEEecCc-cCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEE
Confidence            345678899999999999743 1126789999853 111   11000          0011367777642     37999


Q ss_pred             eecCcCCCCcceEEEeeec
Q psy12724        133 RDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus       133 ~~v~~~D~~G~Y~C~a~n~  151 (167)
                      ++++.+|+ |.|.|.+.|.
T Consensus        86 ~~v~~~D~-G~Y~C~~~~~  103 (222)
T 1q9r_B           86 NTLRAEDS-ATYYCARDHD  103 (222)
T ss_dssp             CSCCGGGC-EEEEEEECCC
T ss_pred             CcCCcccC-eEEEEEEecc
Confidence            99999999 9999999985

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=98.98  E-value=5.8e-10  Score=77.52  Aligned_cols=77  Identities=17%  Similarity=0.388  Sum_probs=49.9

Q ss_pred             CeEEEeCCcEEEEeeeCCccCC-cceeEEEEeCCC----eee--E-----Eeeee--cCCceEEEccCC-----------
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVAD-YVAVESWISDQG----EEL--F-----VDMTE--STDGKYLVLPSG-----------  128 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~-p~p~i~W~k~~~----~~l--~-----~~~~~--~~~~r~~~~~~g-----------  128 (167)
                      +..+.+|++|.|+|.+.+.... ....+.|+|+..    ..+  .     .....  ...+|+.+..++           
T Consensus        11 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~~~~   90 (128)
T 3r0n_A           11 EVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAEL   90 (128)
T ss_dssp             EEECCTTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCCCBC
T ss_pred             eEEEEcCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEeccccccccccccCC
Confidence            3567789999999998642111 123789999631    011  1     00000  023677766553           


Q ss_pred             ---eEEEeecCcCCCCcceEEEeeec
Q psy12724        129 ---ELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus       129 ---~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                         .|.|++++.+|+ |.|.|.+.+.
T Consensus        91 ~~~sL~I~~v~~~D~-G~Y~C~v~~~  115 (128)
T 3r0n_A           91 QDATLALHGLTVEDE-GNYTCEFATF  115 (128)
T ss_dssp             SBCCEEECSCCGGGC-EEEEEEEEEE
T ss_pred             CCeEEEEccCCchhC-eEEEEEEEeC
Confidence               899999999999 9999987654

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=98.97  E-value=4.6e-09  Score=79.95  Aligned_cols=74  Identities=18%  Similarity=0.312  Sum_probs=50.5

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeC--CCee-eEEee-------eecC-CceEEEccCC----eEEEeecC
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISD--QGEE-LFVDM-------TEST-DGKYLVLPSG----ELHIRDVG  136 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~--~~~~-l~~~~-------~~~~-~~r~~~~~~g----~L~I~~v~  136 (167)
                      +.+..+.+|++|+|+| ..   +.|.+.+.|+|.  +... +.-..       .... .+|+.+..++    .|.|++++
T Consensus         9 p~~v~v~~G~~v~L~C-~~---~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~   84 (245)
T 4ei6_B            9 PSHQIIDMGQMVTLNC-DP---VSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTA   84 (245)
T ss_dssp             CSEEEEETTCCEEEEE-EC---CTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCC
T ss_pred             CceEEecCCCCEEEEE-Ec---CCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCC
Confidence            3456788999999999 43   347889999982  1111 00000       0001 1778776532    79999999


Q ss_pred             cCCCCcceEEEeee
Q psy12724        137 PEDGYKSYQCRTKH  150 (167)
Q Consensus       137 ~~D~~G~Y~C~a~n  150 (167)
                      .+|+ |.|.|.+.+
T Consensus        85 ~~D~-G~Y~C~~~~   97 (245)
T 4ei6_B           85 LEDS-AVYFCASSF   97 (245)
T ss_dssp             GGGC-EEEEEEEEC
T ss_pred             HhHC-EEEEEEEcc
Confidence            9999 999999995

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.97  E-value=1.9e-09  Score=79.18  Aligned_cols=77  Identities=19%  Similarity=0.318  Sum_probs=51.5

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEe----e--------eecCCceEEEcc------CCeEEEeec
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVD----M--------TESTDGKYLVLP------SGELHIRDV  135 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~----~--------~~~~~~r~~~~~------~g~L~I~~v  135 (167)
                      +..|.+|++|.|+|.+.+....+.+.|+|+|++. .+...    .        .+...+|+....      ++.|.|+++
T Consensus         8 ~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v   86 (218)
T 4frw_A            8 VVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDA-GEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNA   86 (218)
T ss_dssp             EEEEETTSCEEECCEECCCTTCEEEEEEEEEECS-SSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSC
T ss_pred             eEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCC-CCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeec
Confidence            4678899999999999754222235689999863 22110    0        001123343322      357999999


Q ss_pred             CcCCCCcceEEEeeecC
Q psy12724        136 GPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n~~  152 (167)
                      +.+|+ |.|.|.+.|..
T Consensus        87 ~~~D~-G~Y~C~~~~~~  102 (218)
T 4frw_A           87 VQADE-GEYECRVSTFP  102 (218)
T ss_dssp             CGGGC-EEEEEEEEEET
T ss_pred             cHHHC-CceeEEEEecc
Confidence            99999 99999998865

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.97  E-value=2.3e-09  Score=80.46  Aligned_cols=88  Identities=18%  Similarity=0.259  Sum_probs=58.5

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEeee----------ecCCceEEEcc---CC--eEEE
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDMT----------ESTDGKYLVLP---SG--ELHI  132 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~~----------~~~~~r~~~~~---~g--~L~I  132 (167)
                      +.+..+.+|++|.|+|.+.+. ..+.+.+.|+|++ +..   +.....          +...+|+.+..   ++  .|.|
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (220)
T 1pz5_B            7 SGGGLVQPGGSMKLSCVASGF-TFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM   85 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESS-CGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             cCCEEEcCCCeEEEEEEEcCC-ccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence            445678899999999999743 1126789999863 111   111100          00136777653   23  8999


Q ss_pred             eecCcCCCCcceEEEeeecC------cceEEEeee
Q psy12724        133 RDVGPEDGYKSYQCRTKHRL------TGETRLSAT  161 (167)
Q Consensus       133 ~~v~~~D~~G~Y~C~a~n~~------~~~~~l~~~  161 (167)
                      ++++.+|+ |.|.|.+.|..      +..+.|.+.
T Consensus        86 ~~v~~~D~-G~Y~C~~~~~~~~~~~~~~~~~l~V~  119 (220)
T 1pz5_B           86 NNLRAEDT-GIYYCTRGGAVGAMDYWGQGTSVTVS  119 (220)
T ss_dssp             CSCCGGGC-EEEEEEEECTTSSEEEECCCEEEEEC
T ss_pred             ccCCHHHC-EEEEEEEecCCcccceECCCEEEEEc
Confidence            99999999 99999999863      244566554

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.97  E-value=2.9e-09  Score=80.66  Aligned_cols=79  Identities=22%  Similarity=0.357  Sum_probs=54.4

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEee---------eecCCceEEEcc-----CCeEEEee
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVDM---------TESTDGKYLVLP-----SGELHIRD  134 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~~---------~~~~~~r~~~~~-----~g~L~I~~  134 (167)
                      +....+.+|++|+|+|.+.+.. ...+.+.|+|++ +..+  .-..         .+...+|+.+..     ++.|.|++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (225)
T 1op3_H            7 SGGGLVKAGGSLILSCGVSNFR-ISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHK   85 (225)
T ss_dssp             ECCEEEETTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCeEecCCCCEEEEEEecCcc-cCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECC
Confidence            4456789999999999997431 126789999853 1211  1000         001246787663     24799999


Q ss_pred             cCcCCCCcceEEEeeecC
Q psy12724        135 VGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       135 v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++.+|+ |.|.|.+.|..
T Consensus        86 v~~~D~-G~Y~C~~~~~~  102 (225)
T 1op3_H           86 MRVEDT-AIYYCARKGSD  102 (225)
T ss_dssp             CCGGGC-EEEEEEEECCS
T ss_pred             CChhhC-EEEEEEEecCC
Confidence            999999 99999999863

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=98.97  E-value=5.9e-10  Score=82.07  Aligned_cols=74  Identities=20%  Similarity=0.292  Sum_probs=55.1

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee------eecCCceEEEccCCeEEEeecCcCCCCcceEE
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM------TESTDGKYLVLPSGELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~------~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C  146 (167)
                      .+..+.+|+++.|.|.+.+   .|.+.++|+|++. .+....      .....+|+.+. ++.|.|.+++.+|+ |.|+|
T Consensus        12 ~~~~v~~G~~v~L~C~~~~---~p~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~r~~~~-~~~L~i~~~~~~d~-G~Y~C   85 (209)
T 1nbq_A           12 PEVRIPENNPVKLSCAYSG---FSSPRVEWKFDQG-DTTRLVCYNNKITASYEDRVTFL-PTGITFKSVTREDT-GTYTC   85 (209)
T ss_dssp             SBCCEETTCCCEEECEEES---CSSEEEEEEEEET-TEEEESEETTEECTTTTTTCEEE-TTEEECSCCCTTSC-SEEEE
T ss_pred             CceEEEcCCCEEEEEEEeC---CCCcEEEEEEcCC-ceeEEEEecCccCccccCceEee-ccEEEEeeCCHHHC-cEEEE
Confidence            4567889999999999974   4889999999874 321100      00123455554 48999999999999 99999


Q ss_pred             EeeecC
Q psy12724        147 RTKHRL  152 (167)
Q Consensus       147 ~a~n~~  152 (167)
                      .|.|..
T Consensus        86 ~~~~~~   91 (209)
T 1nbq_A           86 MVSEEG   91 (209)
T ss_dssp             EEEETT
T ss_pred             EEecCC
Confidence            999863

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.97  E-value=1.2e-09  Score=84.35  Aligned_cols=78  Identities=14%  Similarity=0.218  Sum_probs=53.9

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEee-------eecCCceEEEccC-----CeEEEeec
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDM-------TESTDGKYLVLPS-----GELHIRDV  135 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~-------~~~~~~r~~~~~~-----g~L~I~~v  135 (167)
                      +....+.+|++|+|.|.+.+. ..+.|.+.|+|++ +..   +....       .+...+|+.+..+     +.|.|+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~-p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (257)
T 1f3r_B            7 SGPGLVRPSETLSLTCTVSGF-SLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSL   85 (257)
T ss_dssp             ECCSEECTTSEEEEEEEEESS-CTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESC
T ss_pred             CCCccccCCceEEEEEEEecc-cCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCC
Confidence            345678899999999999753 1136789999862 111   11100       0012467877542     37999999


Q ss_pred             CcCCCCcceEEEeeec
Q psy12724        136 GPEDGYKSYQCRTKHR  151 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n~  151 (167)
                      +.+|+ |.|.|.|.|.
T Consensus        86 ~~~Ds-G~Y~C~a~n~  100 (257)
T 1f3r_B           86 QTDDT-GTYYCTRDLY  100 (257)
T ss_dssp             CTTCC-EEEEEEEESS
T ss_pred             CcccC-EEEEEEEccc
Confidence            99999 9999999997

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=98.97  E-value=3.6e-09  Score=72.95  Aligned_cols=85  Identities=13%  Similarity=0.173  Sum_probs=56.6

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc-cCC----eEEEeecCcCCCCcceEEEe
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL-PSG----ELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~-~~g----~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      ..++..|+.+.|+|.+.+  .+|.|.++|.|.++....+... ....+.... .+.    .|+|.+|..+|+ |.|+|.|
T Consensus        23 ~~tv~~G~~~~LeCpv~y--c~~rPnVtWcK~~~~~c~~L~~-~~q~~~~w~e~~n~s~fiL~f~~V~~sDs-G~YrCsA   98 (122)
T 1xau_A           23 KHSAWTGELFKIECPVKY--CVHRPNVTWCKHNGTIWVPLEV-GPQLYTSWEENRSVPVFVLHFKPIHLSDN-GSYSCST   98 (122)
T ss_dssp             EEEECTTSCEEEEEEEEC--SSSCCCEEEEEECSSSEEECCC-BTTEEEEEECSSSSCEEEEEETTCCGGGC-EEEEEEE
T ss_pred             cEEEecCCeEEEEeEecC--CCCCCcEEEEecCCeecccccc-ceeeecceeccCCceeEEEEEeeEEEcCC-ccEEEEe
Confidence            357889999999999964  4689999999977544333110 011111111 222    599999999999 9999999


Q ss_pred             eecC----cceEEEeeeC
Q psy12724        149 KHRL----TGETRLSATK  162 (167)
Q Consensus       149 ~n~~----~~~~~l~~~~  162 (167)
                      .|..    +....+.+++
T Consensus        99 n~~~g~ieSHs~ti~V~~  116 (122)
T 1xau_A           99 NFNSQVINSHSVTIHVRE  116 (122)
T ss_dssp             EETTEEEECCCEEEEEC-
T ss_pred             eCCCCceeeeEEEEEEEe
Confidence            9965    3344455543

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=98.97  E-value=1.4e-09  Score=74.45  Aligned_cols=90  Identities=16%  Similarity=0.214  Sum_probs=58.7

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-------CeeeEEee---eecCCceEEEcc-----CCeEEEeecCc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-------GEELFVDM---TESTDGKYLVLP-----SGELHIRDVGP  137 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-------~~~l~~~~---~~~~~~r~~~~~-----~g~L~I~~v~~  137 (167)
                      ....+.+|++|+|+|...... .....+.|+|..       ...+....   .....+||.+..     +..|.|++++.
T Consensus         5 ~~v~~~~G~~v~L~C~~~~~~-~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~   83 (115)
T 2or7_A            5 TAVQGLAGHPVTLPCIYSTHL-GGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVV   83 (115)
T ss_dssp             -CEEEETTSCEEECCBCCHHH-HCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCG
T ss_pred             cEEEEEcCCCEEEEEEeecCC-CCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecCccCCeEEEEEccCCH
Confidence            346788999999999986321 123578999974       11111100   001346776542     24799999999


Q ss_pred             CCCCcceEEEeeecC---cceEEEeeeCCe
Q psy12724        138 EDGYKSYQCRTKHRL---TGETRLSATKGR  164 (167)
Q Consensus       138 ~D~~G~Y~C~a~n~~---~~~~~l~~~~~~  164 (167)
                      +|+ |.|.|.+.+..   ...+.|.+.+..
T Consensus        84 ~Ds-G~Y~C~v~~~~~~~~~~v~L~V~~~~  112 (115)
T 2or7_A           84 GDG-GPYCCVVEIPGAFHFVDYMLEVKPEL  112 (115)
T ss_dssp             GGC-EEEEEEECCTTSCEEEEEEEEEESCC
T ss_pred             HHC-EEEEEEEECCCceeEEEEEEEEcCCC
Confidence            999 99999998753   445666666654

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=98.96  E-value=2.3e-09  Score=73.13  Aligned_cols=61  Identities=18%  Similarity=0.214  Sum_probs=44.7

Q ss_pred             EEEeCCcEEEEeeeCCccCCcce-----eEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeee
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVA-----VESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p-----~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      .+.+|++++|.|.+.+   .|.+     .+.|+||+ ..+..           ...++.|.|.+++.+|+ |.|+|.|.|
T Consensus        18 ~v~~G~~VtL~C~~~~---~~~~~~~~~~~~w~k~g-~~l~~-----------~~~~~~l~i~~v~~~ds-G~Y~C~~~~   81 (108)
T 4hwn_A           18 EPQAGSPMTLSCQTKL---PLQRSAARLLFSFYKDG-RIVQS-----------RGLSSEFQIPTASEDHS-GSYWCEAAT   81 (108)
T ss_dssp             SCBTTCCEEEEEEC------------CCEEEEEETT-EEEEE-----------EESCCEEEESSCCGGGC-EEEEEEEEC
T ss_pred             cCCCCCcEEEEEcccC---CCCCcCcceEEEEEECC-cCccC-----------CCcccEEEeCccCcccC-eEEEEEEEe
Confidence            4678999999999863   2433     38999997 44421           12457899999999999 999999998


Q ss_pred             cC
Q psy12724        151 RL  152 (167)
Q Consensus       151 ~~  152 (167)
                      ..
T Consensus        82 ~~   83 (108)
T 4hwn_A           82 ED   83 (108)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.96  E-value=1.5e-09  Score=83.44  Aligned_cols=77  Identities=19%  Similarity=0.267  Sum_probs=54.4

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCc-----ceeEEEEeCC-Ceee--EEe----eeecCCceEEEccCC---eEEEeecC
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADY-----VAVESWISDQ-GEEL--FVD----MTESTDGKYLVLPSG---ELHIRDVG  136 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p-----~p~i~W~k~~-~~~l--~~~----~~~~~~~r~~~~~~g---~L~I~~v~  136 (167)
                      +.+..+.+|++|+|+|.+.+.   |     .+.++|+|++ +..+  ...    ..+...+|+.+..++   .|.|.+++
T Consensus        41 p~~~~v~~G~~v~L~C~~~~~---~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  117 (252)
T 3bkj_L           41 PLSLPVNLGEQASISCRSSQS---IVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVE  117 (252)
T ss_dssp             CSEEEECTTSCEEEEEEESSC---CBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             CceEEEeCCCcEEEEEEcCCC---ccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCC
Confidence            345678899999999999753   5     5889999964 1111  100    000113577665433   79999999


Q ss_pred             cCCCCcceEEEeeecC
Q psy12724        137 PEDGYKSYQCRTKHRL  152 (167)
Q Consensus       137 ~~D~~G~Y~C~a~n~~  152 (167)
                      .+|+ |.|.|.|.|..
T Consensus       118 ~~D~-G~Y~C~~~~~~  132 (252)
T 3bkj_L          118 AEDL-GVYYCFQASLV  132 (252)
T ss_dssp             GGGC-EEEEEEECSBS
T ss_pred             cccC-EEEEEEEEcCC
Confidence            9999 99999999874

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=98.96  E-value=2e-09  Score=73.40  Aligned_cols=88  Identities=10%  Similarity=0.035  Sum_probs=58.6

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCe----eeEEeee---ecCCceEEEcc---CC--eEEEeecCcCCC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGE----ELFVDMT---ESTDGKYLVLP---SG--ELHIRDVGPEDG  140 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~----~l~~~~~---~~~~~r~~~~~---~g--~L~I~~v~~~D~  140 (167)
                      ....+.+|++|.|+|...+.  .....+.|+|....    .+.....   +...+|+.+..   ++  .|.|++++.+|+
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~--~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds   86 (113)
T 1zox_A            9 EEVSGQEQGSLTVQCRYTSG--WKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDA   86 (113)
T ss_dssp             SEEEEETTSCEEEEEEECGG--GTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CEEEEeCCCcEEEEeECCCC--cccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHHHC
Confidence            34578899999999998742  12345899997521    1211100   01235776652   22  799999999999


Q ss_pred             CcceEEEeeecC---cceEEEeeeCC
Q psy12724        141 YKSYQCRTKHRL---TGETRLSATKG  163 (167)
Q Consensus       141 ~G~Y~C~a~n~~---~~~~~l~~~~~  163 (167)
                       |.|.|.+.+..   ...+.|.+.+.
T Consensus        87 -G~Y~C~v~~~~~~~~~~v~L~V~~~  111 (113)
T 1zox_A           87 -GIYWCGITKGGLDPMFKVTVNIGPV  111 (113)
T ss_dssp             -EEEEEEECCSSSCCEEEEEEEEECC
T ss_pred             -EEEEEeeEcCCCCccEEEEEEEEcC
Confidence             99999999874   44667777654

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=98.96  E-value=1.6e-09  Score=73.95  Aligned_cols=75  Identities=16%  Similarity=0.186  Sum_probs=51.9

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-e---eeEEe---eeecCCceEEEccC---CeEEEeecCcCCCCcc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-E---ELFVD---MTESTDGKYLVLPS---GELHIRDVGPEDGYKS  143 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~---~l~~~---~~~~~~~r~~~~~~---g~L~I~~v~~~D~~G~  143 (167)
                      +..+.+|++|+|+|.+.+.   +.+.+.|+|... .   .+...   ..+...+|+.+..+   ..|.|++++.+|+ |.
T Consensus        13 ~~~~~~G~~v~L~C~~~~~---~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds-G~   88 (111)
T 1i3g_L           13 FMSTSVGDRVSITCKASQD---VGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDL-AD   88 (111)
T ss_dssp             EEECCTTCCEEEEEEESSC---CTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-SE
T ss_pred             EEEEcCCCCEEEEEEeCCC---CCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcCCCEEEEEECCCCHHHC-EE
Confidence            4567899999999999743   567899998641 1   12110   00012457766432   3699999999999 99


Q ss_pred             eEEEeeecC
Q psy12724        144 YQCRTKHRL  152 (167)
Q Consensus       144 Y~C~a~n~~  152 (167)
                      |.|.+.|..
T Consensus        89 Y~C~~~~~~   97 (111)
T 1i3g_L           89 YFCQQYSSY   97 (111)
T ss_dssp             EEEEECSSS
T ss_pred             EEEEEecCC
Confidence            999999863

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.96  E-value=2.4e-09  Score=83.06  Aligned_cols=73  Identities=15%  Similarity=0.258  Sum_probs=50.0

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee--eEEeeee-------cCCc-eEEEcc----CCeEEEeecCc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE--LFVDMTE-------STDG-KYLVLP----SGELHIRDVGP  137 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~--l~~~~~~-------~~~~-r~~~~~----~g~L~I~~v~~  137 (167)
                      .+..+.+|++|+|+|.+.+    +.+.+.|+|.. +..  +.-....       ...+ |+.+..    ++.|.|++++.
T Consensus        35 ~~v~v~~G~~v~L~C~~~~----~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~  110 (270)
T 3qib_D           35 RYLVKGQGQKAKMRCIPEK----GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEA  110 (270)
T ss_dssp             SEEEEETTSCEEEEEECCT----TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCG
T ss_pred             CeEEEcCCCCEEEEEEecC----CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCH
Confidence            4467889999999999853    66789999832 111  1100000       0001 776653    44799999999


Q ss_pred             CCCCcceEEEeee
Q psy12724        138 EDGYKSYQCRTKH  150 (167)
Q Consensus       138 ~D~~G~Y~C~a~n  150 (167)
                      +|+ |.|.|.+.|
T Consensus       111 ~D~-G~Y~C~~~~  122 (270)
T 3qib_D          111 GDS-ALYLCASSL  122 (270)
T ss_dssp             GGC-EEEEEEEES
T ss_pred             hHC-eEEEEEEec
Confidence            999 999999996

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.96  E-value=1.3e-09  Score=84.26  Aligned_cols=84  Identities=18%  Similarity=0.323  Sum_probs=56.6

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEeee-------ecC-CceEEEcc----CCeEEEeecCc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVDMT-------EST-DGKYLVLP----SGELHIRDVGP  137 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~~~-------~~~-~~r~~~~~----~g~L~I~~v~~  137 (167)
                      .+..+.+|++|+|+|.+.    .+.+.+.|+|.. +...  .....       ... .+|+.+..    ++.|.|++++.
T Consensus        34 ~~v~v~~G~~v~L~C~~~----~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~  109 (268)
T 3pl6_D           34 SNKVTEKGKYVELRCDPI----SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTER  109 (268)
T ss_dssp             SEEEEETTCCEEEEEBCB----TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCG
T ss_pred             CEEEecCCCCEEEEEEeC----CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCc
Confidence            346788999999999985    367889999821 1111  10000       000 16777764    45799999999


Q ss_pred             CCCCcceEEEeeec-----CcceEEEeee
Q psy12724        138 EDGYKSYQCRTKHR-----LTGETRLSAT  161 (167)
Q Consensus       138 ~D~~G~Y~C~a~n~-----~~~~~~l~~~  161 (167)
                      +|+ |.|.|.+.|.     ....+.|.+.
T Consensus       110 ~D~-G~Y~C~~~~~~~~~~~~~~~~l~V~  137 (268)
T 3pl6_D          110 GDS-AVYLCATSALGDTQYFGPGTRLTVL  137 (268)
T ss_dssp             GGC-EEEEEEEESSSSSCEECCCEEEEEE
T ss_pred             ccC-EEEEEEEecCCCceeeCCcEEEEEe
Confidence            999 9999999973     2444555554

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.96  E-value=3.6e-09  Score=84.72  Aligned_cols=127  Identities=12%  Similarity=0.154  Sum_probs=79.9

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceee-ecCCc---eEE-----EeeeEEEecC---------
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ-IDNQD---FVV-----SQSYTVNIMD---------   74 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~-~~~~~---~v~-----~g~y~c~~~~---------   74 (167)
                      .++.|+++.|.+|+++.|.|.+......   .+.|...-.+... ..+..   +.+     .+.|.|.+..         
T Consensus         2 ~~v~P~~~~V~~G~sv~l~Cs~~c~~p~---~~~~~t~l~~~~~~~~g~~~~~~~l~~v~~~~~y~C~~~~~~~~~~~~v   78 (291)
T 1mq8_A            2 TSVSPSKVILPRGGSVLVTCSTSCDQPK---LLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKT   78 (291)
T ss_dssp             EEEECSEEEECTTCEEEEEEEECCSSCS---EEEEECSSCCCCCCCSCSSEEEEEEESCCSCCCCEEEEECSSCEEEEEC
T ss_pred             eEEeCCccEEcCCCeEEEEEeCCCCCCc---cceEEecCCCcccccCCCceEEEEEEecccCCeEEEEEEcCCccEEEEE
Confidence            4578889999999999999999643322   4788632111121 11211   111     4679998621         


Q ss_pred             -----------------eEEEeCCcEEEEeeeCCccCCcce--eEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeec
Q psy12724         75 -----------------EHVLKGNSAVLKCHIPSFVADYVA--VESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDV  135 (167)
Q Consensus        75 -----------------~~v~~G~~a~l~C~~~~~~~~p~p--~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v  135 (167)
                                       ..+.+|+.+.|.|.+.+.  .|.+  .|+|+|++ ..+....   ....   ..+..|.|...
T Consensus        79 ~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~--~P~~~l~itW~kg~-~~l~~~~---~~~~---~~~~~l~~~~~  149 (291)
T 1mq8_A           79 FLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGG--APRANLTVVLLRGE-KELKREP---AVGE---PAEVTTTVLVR  149 (291)
T ss_dssp             EEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCC--BSTTTEEEEEESSS-SEEEEEE---CCBT---TEEEEEECCCS
T ss_pred             EEEEecCCCCCEEecCCccccCCCCEEEEEEecCc--cCCCCcEEEEEECC-EEeeccc---CCCC---CceEEEEeeee
Confidence                             124679999999999863  3543  68999998 5654321   0110   01235666666


Q ss_pred             CcCCCCcceEEEeeecC
Q psy12724        136 GPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n~~  152 (167)
                      +..|. +.|+|.|.|.+
T Consensus       150 ~~D~g-~~~~C~A~~~l  165 (291)
T 1mq8_A          150 RDHHG-ANFSCRTELDL  165 (291)
T ss_dssp             SSCSS-CEEEEEEEEEC
T ss_pred             eccCC-ceEEEEEEecC
Confidence            66665 79999999975

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.96  E-value=2e-09  Score=81.87  Aligned_cols=85  Identities=19%  Similarity=0.323  Sum_probs=58.0

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCc--ceeEEEEeCC-Ceee--EEeee---------ecCCceEEEcc-----CCeEEEe
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADY--VAVESWISDQ-GEEL--FVDMT---------ESTDGKYLVLP-----SGELHIR  133 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p--~p~i~W~k~~-~~~l--~~~~~---------~~~~~r~~~~~-----~g~L~I~  133 (167)
                      .+..+.+|++|+|+|.+.+.   |  .+.+.|+|++ +..+  .-...         +...+|+.+..     ++.|.|+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~---~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (227)
T 1mju_H            8 GAELVKPGASVKLSCKASGY---TFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS   84 (227)
T ss_dssp             SEEEECTTCCEEEEEEEESS---CGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             CCeEEcCCCCEEEEEEecCC---ccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEEC
Confidence            44578899999999999743   4  5789999864 1221  10000         01146777653     3489999


Q ss_pred             ecCcCCCCcceEEEeeecC----cceEEEeee
Q psy12724        134 DVGPEDGYKSYQCRTKHRL----TGETRLSAT  161 (167)
Q Consensus       134 ~v~~~D~~G~Y~C~a~n~~----~~~~~l~~~  161 (167)
                      +++.+|+ |.|.|.+.|..    ...+.|.+.
T Consensus        85 ~v~~~D~-G~Y~C~~~~~~~~~~~~~~~L~V~  115 (227)
T 1mju_H           85 SLTSDDS-AVYYCANKLGWFPYWGQGTLVTVS  115 (227)
T ss_dssp             SCCGGGC-EEEEEEEEETTEEEECCCEEEEEC
T ss_pred             CCCcccC-EEEEEEECCCCceEEcCcEEEEEc
Confidence            9999999 99999999852    344566664

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.96  E-value=1.4e-09  Score=87.25  Aligned_cols=87  Identities=18%  Similarity=0.294  Sum_probs=59.0

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeE--Eee---------eecCCceEEEccC-----CeEEEeec
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELF--VDM---------TESTDGKYLVLPS-----GELHIRDV  135 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~--~~~---------~~~~~~r~~~~~~-----g~L~I~~v  135 (167)
                      .+..+.+|++|.|+|.+.+. ..|.+.++|+|++ +..+.  ...         .+...+|+.+..+     +.|.|+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~-~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (344)
T 1za6_B            8 GAEVVKPGASVKISCKASGY-TFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSL   86 (344)
T ss_dssp             CCEEECTTCCEEEEEEEESS-CTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeEEeCCCcEEEEEEcCCc-cccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCC
Confidence            35678899999999999753 1146789999873 22221  000         0012467776642     47999999


Q ss_pred             CcCCCCcceEEEeeecC---cceEEEeee
Q psy12724        136 GPEDGYKSYQCRTKHRL---TGETRLSAT  161 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n~~---~~~~~l~~~  161 (167)
                      +.+|+ |.|.|.|.|..   ...+.|.+.
T Consensus        87 ~~~D~-G~Y~C~~~n~~~~~~~~~~l~V~  114 (344)
T 1za6_B           87 RSEDT-AVYFCTRSLNMAYWGQGTLVTVS  114 (344)
T ss_dssp             CGGGC-EEEEEEETTTTCEECCCEEEEEC
T ss_pred             CcccC-EEEEEEEecCcceecCcEEEEEe
Confidence            99999 99999999953   344566654

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.96  E-value=1.6e-09  Score=83.42  Aligned_cols=87  Identities=21%  Similarity=0.320  Sum_probs=58.3

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeEEe-----------eeecCCceEEEccCC-----eEEEeec
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELFVD-----------MTESTDGKYLVLPSG-----ELHIRDV  135 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~~~-----------~~~~~~~r~~~~~~g-----~L~I~~v  135 (167)
                      .+..+.+|++|+|.|.+.+. ..+.+.+.|+|.. +..+...           ..+...+|+.+..++     .|.|+++
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (256)
T 3umt_A           10 GLELVKPGASVKISCKTSGY-TFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSL   88 (256)
T ss_dssp             CCEEECTTCCEEEEEEEESS-CGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CceEEcCCCCEEEEEEEecc-cccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCC
Confidence            34567899999999998753 1126789999742 2221100           001124677776433     3999999


Q ss_pred             CcCCCCcceEEEeeec-------CcceEEEeee
Q psy12724        136 GPEDGYKSYQCRTKHR-------LTGETRLSAT  161 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n~-------~~~~~~l~~~  161 (167)
                      +.+|+ |.|.|.|.|.       ....+.|.+.
T Consensus        89 ~~~Ds-G~Y~C~~~~~~~~~~~~~~~~~~L~V~  120 (256)
T 3umt_A           89 TSEDS-AVYYCARDDRYPAWFAYWGQGTTVTVS  120 (256)
T ss_dssp             CGGGC-EEEEEEECCSTTCCSCEECCCEEEEEC
T ss_pred             CcccC-EEEEEEEccCCCccccEECCCEEEEEc
Confidence            99999 9999999997       2445666665

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.96  E-value=1.7e-09  Score=80.81  Aligned_cols=78  Identities=17%  Similarity=0.187  Sum_probs=52.8

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCC-cceeEEEEeCCC-eeeEE-ee-----eecCCceEEEccCC---eEEEeecCcCCC
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVAD-YVAVESWISDQG-EELFV-DM-----TESTDGKYLVLPSG---ELHIRDVGPEDG  140 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~-p~p~i~W~k~~~-~~l~~-~~-----~~~~~~r~~~~~~g---~L~I~~v~~~D~  140 (167)
                      +.+..+.+|++|.|.|.+.+  +. +.+.++|+|++. ..+.. ..     .....+|+.+..++   .|.|.+++.+|+
T Consensus         7 p~~~~v~~G~~v~L~C~v~~--~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   84 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSS--SNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDE   84 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCT--TTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             CCcEEecCCCeEEEEEEeec--CCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccC
Confidence            34567889999999999532  22 367899999541 11110 00     00113577665333   799999999999


Q ss_pred             CcceEEEeeecC
Q psy12724        141 YKSYQCRTKHRL  152 (167)
Q Consensus       141 ~G~Y~C~a~n~~  152 (167)
                       |.|.|.|.|..
T Consensus        85 -G~Y~C~~~~~~   95 (216)
T 2xzc_L           85 -ADYYCGTWDSS   95 (216)
T ss_dssp             -EEEEEEEECTT
T ss_pred             -EEEEEEEEeCC
Confidence             99999999965

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.95  E-value=1.3e-09  Score=83.75  Aligned_cols=76  Identities=18%  Similarity=0.261  Sum_probs=52.7

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeEEeee------ecCCceEEEccCC---eEEEeecCcCCCCcc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELFVDMT------ESTDGKYLVLPSG---ELHIRDVGPEDGYKS  143 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~~~~~------~~~~~r~~~~~~g---~L~I~~v~~~D~~G~  143 (167)
                      +..+.+|++|+|+|.+.+. ..|.+.+.|+|++ +........      ....+|+.+..++   .|.|++++.+|+ |.
T Consensus        11 ~~~v~~G~~v~L~C~~~~~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds-G~   88 (256)
T 3ux9_B           11 SVSGAPGQRVTISCSGSSS-NIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDE-AD   88 (256)
T ss_dssp             EEEECTTCCEEEEEECCTT-TTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGC-EE
T ss_pred             cEEEcCCCcEEEEEecCCC-CCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhC-EE
Confidence            4578899999999999742 1267889999853 111110000      0123577665433   699999999999 99


Q ss_pred             eEEEeeec
Q psy12724        144 YQCRTKHR  151 (167)
Q Consensus       144 Y~C~a~n~  151 (167)
                      |.|.|.|.
T Consensus        89 Y~C~~~~~   96 (256)
T 3ux9_B           89 YYCQVRDN   96 (256)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99999984

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.95  E-value=2.7e-09  Score=76.60  Aligned_cols=73  Identities=15%  Similarity=0.176  Sum_probs=55.2

Q ss_pred             EecCeEEEeCCcEEEEeeeCCccCCc-ceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEee
Q psy12724         71 NIMDEHVLKGNSAVLKCHIPSFVADY-VAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTK  149 (167)
Q Consensus        71 ~~~~~~v~~G~~a~l~C~~~~~~~~p-~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~  149 (167)
                      .+.+..+.+|+++.|.|.+.+.   | .+.++|+|++ ..+.       .      .++.|.|.+++.+|+ |.|+|.|.
T Consensus        10 ~p~~~~v~~G~~v~l~C~~~~~---p~~~~~~W~~~g-~~~~-------~------~~~~~~~~~~~~~d~-G~Y~C~~~   71 (170)
T 3ry4_A           10 EPPWINVLQEDSVTLTCQGARS---PESDSIQWFHNG-NLIP-------T------HTQPSYRFKANNNDS-GEYTCQTG   71 (170)
T ss_dssp             ESCCSEEETTCEEEEEEESCCC---SSSSCEEEEETT-EECT-------T------CCSSEEEEECCGGGC-EEEEEEET
T ss_pred             CCCCeEEECCCcEEEEEEecCC---CCcceEEEEECC-eEcc-------c------CccceEEEecccccC-eEEEEEEe
Confidence            3444578899999999999853   4 6789999997 4442       1      145688999999999 99999999


Q ss_pred             ecC-cceEEEeee
Q psy12724        150 HRL-TGETRLSAT  161 (167)
Q Consensus       150 n~~-~~~~~l~~~  161 (167)
                      |.. +..+.|.+.
T Consensus        72 ~~~~s~~~~l~v~   84 (170)
T 3ry4_A           72 QTSLSDPVHLTVL   84 (170)
T ss_dssp             TSBCCCCEEEEEE
T ss_pred             CCCceEeEEEEEE
Confidence            865 445555554

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=98.95  E-value=2.7e-09  Score=72.45  Aligned_cols=87  Identities=13%  Similarity=0.155  Sum_probs=56.1

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-e-e--eEEeeee--cCCceEEEcc---C--CeEEEeecCcCCCCc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-E-E--LFVDMTE--STDGKYLVLP---S--GELHIRDVGPEDGYK  142 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~-~--l~~~~~~--~~~~r~~~~~---~--g~L~I~~v~~~D~~G  142 (167)
                      ...+.+|++|+|+|.+.+.  .+.+.+.|+|... . .  +......  ...+|+.+..   +  ..|.|++++.+|+ |
T Consensus         5 ~v~~~~G~~v~L~C~~~~~--~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Ds-G   81 (110)
T 2q87_A            5 TVAGPVGGSLSVQCPYEKE--HRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDA-G   81 (110)
T ss_dssp             EEEECTTSCEEEEEECCGG--GTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEEEEESSCCGGGC-E
T ss_pred             EEEEeCCCcEEEEeEecCC--cCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEEEEEccCCHHHC-E
Confidence            4577899999999998642  1235799998642 1 1  1110000  0135776642   2  2799999999999 9


Q ss_pred             ceEEEeeecC-------cceEEEeeeCC
Q psy12724        143 SYQCRTKHRL-------TGETRLSATKG  163 (167)
Q Consensus       143 ~Y~C~a~n~~-------~~~~~l~~~~~  163 (167)
                      .|.|.+.+..       ..++.|.+.|+
T Consensus        82 ~Y~C~~~~~~~g~~~~~~~~v~v~V~p~  109 (110)
T 2q87_A           82 TYWCGVDTPWLQDFHDPVVEVEVSVFPA  109 (110)
T ss_dssp             EEEEEEECTTSCCBCCCSEEEEEEEC--
T ss_pred             EEEEEEecCccCccCCccEEEEEEEecC
Confidence            9999999873       23555666554

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.95  E-value=1.9e-09  Score=80.12  Aligned_cols=80  Identities=20%  Similarity=0.238  Sum_probs=55.6

Q ss_pred             ecCeEEEeCCcEEEEeeeCCc----cCCcceeEEEEeCCCe-----eeEEee-----eecCCceEEEccC-----CeEEE
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSF----VADYVAVESWISDQGE-----ELFVDM-----TESTDGKYLVLPS-----GELHI  132 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~----~~~p~p~i~W~k~~~~-----~l~~~~-----~~~~~~r~~~~~~-----g~L~I  132 (167)
                      +.+..+.+|++|.|+|.+.+.    ...+.+.+.|+|++..     .+....     .+...+|+.+..+     +.|.|
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I   86 (214)
T 2zg1_A            7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSI   86 (214)
T ss_dssp             CSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEE
Confidence            345678899999999998531    0125788999998631     111100     0112467877643     37999


Q ss_pred             eecCcCCCCcceEEEeeecC
Q psy12724        133 RDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       133 ~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++++.+|+ |.|.|.+.|..
T Consensus        87 ~~v~~~D~-G~Y~C~~~~~~  105 (214)
T 2zg1_A           87 GDARMEDT-GSYFFRVERGR  105 (214)
T ss_dssp             CSCCGGGC-EEEEEEEEETT
T ss_pred             ccCCHhhC-ceEEEEEEcCC
Confidence            99999999 99999999874

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.94  E-value=2.8e-09  Score=80.72  Aligned_cols=76  Identities=14%  Similarity=0.218  Sum_probs=51.8

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEee-------eecCCceEEEcc----CCeEEEeecCc
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVDM-------TESTDGKYLVLP----SGELHIRDVGP  137 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~~-------~~~~~~r~~~~~----~g~L~I~~v~~  137 (167)
                      +.+..+.+|++|+|+|. .   +.|.|.++|+|++ +..+  ....       .....+|+.+..    +..|.|++++.
T Consensus         7 p~~~~v~~G~~v~L~C~-~---~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~   82 (238)
T 2p1y_A            7 PRNKVAVTGGKVTLSCN-Q---TNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATP   82 (238)
T ss_dssp             CSEEEEETTCCEEEEEE-E---CSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCG
T ss_pred             ccceEEeCCCEEEEEee-c---CCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCc
Confidence            44567899999999999 4   4588899999962 1111  0000       001135666543    34799999999


Q ss_pred             CCCCcceEEEeeecC
Q psy12724        138 EDGYKSYQCRTKHRL  152 (167)
Q Consensus       138 ~D~~G~Y~C~a~n~~  152 (167)
                      +|+ |.|.|.|.|..
T Consensus        83 ~Ds-G~Y~C~~~~~~   96 (238)
T 2p1y_A           83 SQT-SVYFCASGDLG   96 (238)
T ss_dssp             GGC-EEEEEEEEC--
T ss_pred             ccC-eeEEEEEEeCC
Confidence            999 99999999863

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.94  E-value=4.8e-09  Score=79.71  Aligned_cols=72  Identities=22%  Similarity=0.309  Sum_probs=50.1

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEe------eeecCCceEEEcc----CCeEEEeecCcC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVD------MTESTDGKYLVLP----SGELHIRDVGPE  138 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~------~~~~~~~r~~~~~----~g~L~I~~v~~~  138 (167)
                      .+..+.+|++|.|+|.+.+    |.+.+.|+|.. +..   +...      ......+|+.+..    +..|.|++++.+
T Consensus        10 ~~v~v~~G~~v~L~C~~~~----~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~   85 (240)
T 3q5y_A           10 RHIIKEKGGRSVLTCIPIS----GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELE   85 (240)
T ss_dssp             SEEEEETTCCEEEEEECCT----TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGG
T ss_pred             ceeeecCCCcEEEEEEeCC----CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChh
Confidence            4567889999999999863    67789999822 111   1000      0001235776654    236999999999


Q ss_pred             CCCcceEEEee
Q psy12724        139 DGYKSYQCRTK  149 (167)
Q Consensus       139 D~~G~Y~C~a~  149 (167)
                      |+ |.|.|.+.
T Consensus        86 D~-G~Y~C~~~   95 (240)
T 3q5y_A           86 DS-AMYFCASS   95 (240)
T ss_dssp             GC-EEEEEEEE
T ss_pred             HC-EEEEEEEc
Confidence            99 99999997

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=98.94  E-value=2.7e-09  Score=72.80  Aligned_cols=73  Identities=18%  Similarity=0.384  Sum_probs=51.0

Q ss_pred             eEEEeCCcEEEEeeeC-CccCCcceeEEEEeCC-Ce---eeEEeee--------ecC-CceEEEccCC---eEEEeecCc
Q psy12724         75 EHVLKGNSAVLKCHIP-SFVADYVAVESWISDQ-GE---ELFVDMT--------EST-DGKYLVLPSG---ELHIRDVGP  137 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~-~~~~~p~p~i~W~k~~-~~---~l~~~~~--------~~~-~~r~~~~~~g---~L~I~~v~~  137 (167)
                      ..+.+|++|+|+|.+. +.   +.+.+.|+|.. +.   .+.....        +.. .+|+.+..++   .|.|++++.
T Consensus         9 ~~~~~G~~v~L~C~~~~~~---~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~   85 (111)
T 2qhl_A            9 KTVKRGENVTMECSMSKVK---DKDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQKFDLNIIGTRE   85 (111)
T ss_dssp             EECCTTCCEEECCBCTTCS---CGGGEEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEESSSBEEEEESSCCG
T ss_pred             EEEeCCCCEEEEEEccCCc---ccceEEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEEEcCCeEEEEECCCCh
Confidence            4677899999999986 43   45678999853 11   1211110        001 4677765433   699999999


Q ss_pred             CCCCcceEEEeeec
Q psy12724        138 EDGYKSYQCRTKHR  151 (167)
Q Consensus       138 ~D~~G~Y~C~a~n~  151 (167)
                      +|+ |.|.|.+.|.
T Consensus        86 ~Ds-G~Y~C~~~~~   98 (111)
T 2qhl_A           86 DDG-GEYFCGEVEG   98 (111)
T ss_dssp             GGC-EEEEEEEEET
T ss_pred             hHC-EEEEEEEccC
Confidence            999 9999999985

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=98.93  E-value=7.7e-09  Score=72.20  Aligned_cols=74  Identities=20%  Similarity=0.364  Sum_probs=50.9

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeEEeeeecCCceEEEc---c--CCeEEEeecCcCCCCcceEE
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELFVDMTESTDGKYLVL---P--SGELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~~~~~~~~~~r~~~~---~--~g~L~I~~v~~~D~~G~Y~C  146 (167)
                      .+..+.+|++|+|.|.+.+. ..+.+.+.|+|.. +.......  ...+|+.+.   .  +..|.|++++.+|+ |.|.|
T Consensus         8 ~~v~v~~G~~vtL~C~~s~~-~~~~~~v~Wyrq~~g~~~~~~~--~~~~R~~~~~~~~~~~~~L~I~~~~~~Ds-G~Y~C   83 (121)
T 2i24_N            8 QRITKETGESLTINCVVRDS-RCVLSTGYWYRKPPGSRNEESI--SDGGRYVETVNRGSKSFSLRINDLTVKDS-GTYRC   83 (121)
T ss_dssp             SEEEEETTCCEEEEEEECSC-CCCEEEEEEEEECTTCSCCEEE--CSBTTEEEEEETTTTEEEEEECSCCGGGC-EEEEE
T ss_pred             cEEEEecCCcEEEEeEccCC-CCCCCEEEEEEeCCCCCceeeE--ecCCCeEEEecCCCCEEEEEECCCChhhC-EEEEE
Confidence            34678899999999999643 1145789999864 11110011  135677653   1  23699999999999 99999


Q ss_pred             Eeee
Q psy12724        147 RTKH  150 (167)
Q Consensus       147 ~a~n  150 (167)
                      .+..
T Consensus        84 ~~~~   87 (121)
T 2i24_N           84 KPES   87 (121)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            9974

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.93  E-value=2.8e-09  Score=81.99  Aligned_cols=80  Identities=14%  Similarity=0.209  Sum_probs=55.1

Q ss_pred             EEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEee--------eecCCceEEEccCC-----eEEE
Q psy12724         70 VNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDM--------TESTDGKYLVLPSG-----ELHI  132 (167)
Q Consensus        70 c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~--------~~~~~~r~~~~~~g-----~L~I  132 (167)
                      -.+.+..+.+|++|+|+|.+.+. ..|.+.+.|+|.. +..   +....        .+...+|+.+..++     .|.|
T Consensus        11 ~~~~~~~v~~G~~v~L~C~~~~~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   89 (256)
T 3juy_B           11 VQSGAEVKKPGASVKVSCQASGY-RFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMEL   89 (256)
T ss_dssp             EECCCEEECTTCCEEEEEEEESS-CGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             EecCCceecCCCeEEEEEEeecc-cccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEE
Confidence            34456788899999999999752 1267889999742 111   11000        00123578776322     5999


Q ss_pred             eecCcCCCCcceEEEeeec
Q psy12724        133 RDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus       133 ~~v~~~D~~G~Y~C~a~n~  151 (167)
                      ++++.+|+ |.|.|.|.|.
T Consensus        90 ~~v~~~Ds-G~Y~C~~~~~  107 (256)
T 3juy_B           90 RSLRSADT-AVYYCARVGE  107 (256)
T ss_dssp             CSCCGGGC-EEEEEEECCC
T ss_pred             CCCCcccC-EEEEEeEEec
Confidence            99999999 9999999997

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.93  E-value=3e-09  Score=83.36  Aligned_cols=80  Identities=20%  Similarity=0.271  Sum_probs=55.3

Q ss_pred             EecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-eee--EEee---------eecCCceEEEcc-----CCeEEEe
Q psy12724         71 NIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-EEL--FVDM---------TESTDGKYLVLP-----SGELHIR  133 (167)
Q Consensus        71 ~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~~l--~~~~---------~~~~~~r~~~~~-----~g~L~I~  133 (167)
                      .+.+..+.+|++|+|+|.+.+. ..+.|.+.|+|++. ..+  ....         .+...+|+.+..     ++.|.|+
T Consensus        32 ~p~~~~v~~G~~v~L~C~~~g~-~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~  110 (282)
T 1qok_A           32 QSGAELVRSGTSVKLSCTASGF-NIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLS  110 (282)
T ss_dssp             ECCCEEEETTCCEEEEEEEESS-CGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             CCCCEEEeCCCeEEEEEeccCC-CCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEEC
Confidence            3456788999999999998743 11367899999641 111  1000         001236776653     2479999


Q ss_pred             ecCcCCCCcceEEEeeecC
Q psy12724        134 DVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       134 ~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +++.+|+ |.|.|.+.|..
T Consensus       111 ~v~~~Ds-G~Y~C~~~n~~  128 (282)
T 1qok_A          111 SLTSEDT-AVYYCNEGTPT  128 (282)
T ss_dssp             SCCGGGC-EEEEEEEECSS
T ss_pred             cCChhhC-EEEEEEeccCC
Confidence            9999999 99999999874

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.93  E-value=4.6e-09  Score=78.97  Aligned_cols=88  Identities=15%  Similarity=0.217  Sum_probs=58.8

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEee-------eecCCceEEEcc---C--CeEEEeec
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDM-------TESTDGKYLVLP---S--GELHIRDV  135 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~-------~~~~~~r~~~~~---~--g~L~I~~v  135 (167)
                      +.+..+.+|++|.|+|.+.+. ..+.+.+.|+|++ +..   +....       .+...+|+.+..   +  ..|.|+++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~-~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (215)
T 1c5d_H            7 SGPGLVQPSQTLSLTCTVSGF-PLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL   85 (215)
T ss_dssp             ECCCEECTTCCEEEEEEECSS-CTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSC
T ss_pred             CCCeeecCCCcEEEEEEECCC-cCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCC
Confidence            445678899999999999753 1125789999863 111   11100       001246787653   1  27999999


Q ss_pred             CcCCCCcceEEEeeecC------cceEEEeee
Q psy12724        136 GPEDGYKSYQCRTKHRL------TGETRLSAT  161 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n~~------~~~~~l~~~  161 (167)
                      +.+|+ |.|.|.+.|..      ...+.|.+.
T Consensus        86 ~~~D~-G~Y~C~~~~~~~~~~~~~~~~~L~V~  116 (215)
T 1c5d_H           86 QTEDT-AIYFCTREDGWNYFDYWGPGTMVTVS  116 (215)
T ss_dssp             CGGGC-EEEEEEECCSSSCSCCBCCCEEEEEC
T ss_pred             CcccC-EEEEEEEecCCcccceEcCCEEEEec
Confidence            99999 99999999862      234666664

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.93  E-value=2e-09  Score=80.90  Aligned_cols=65  Identities=12%  Similarity=0.215  Sum_probs=50.0

Q ss_pred             EeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCcceEE
Q psy12724         78 LKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGETR  157 (167)
Q Consensus        78 ~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~~~~~  157 (167)
                      .+|++++|.|.+      |.|.++|+||+ ..+...          ...++.|.|.+++.+|+ |.|+|.+.|..+....
T Consensus        16 ~~G~~v~L~C~~------p~~~i~W~k~g-~~l~~~----------~~~~~~L~i~~v~~~Ds-G~Y~C~~~~~~s~~~~   77 (204)
T 1sy6_A           16 QEDGSVLLTCDA------EAKNITWFKDG-KMIGFL----------TEDKKKWNLGSNAKDPR-GMYQCKGSQNKSKPLQ   77 (204)
T ss_dssp             CSSSEEEEEECS------CSSEEEEEETT-EEEEEE----------ESSCCCEEEEEGGGCCE-EEEEEESSSSCCCCEE
T ss_pred             cCCCeEEEEEcC------CCCEEEEEECC-EECCCC----------CCCCCeEEeCCCCcCCC-EEEEEEecCCCCeeEE
Confidence            479999999998      56789999997 555321          12467899999999999 9999998876655455


Q ss_pred             Eee
Q psy12724        158 LSA  160 (167)
Q Consensus       158 l~~  160 (167)
                      +.+
T Consensus        78 v~v   80 (204)
T 1sy6_A           78 VYY   80 (204)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.92  E-value=5.6e-09  Score=78.85  Aligned_cols=88  Identities=23%  Similarity=0.252  Sum_probs=58.5

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEee--------eecCCceEEEccC-----CeEEEee
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDM--------TESTDGKYLVLPS-----GELHIRD  134 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~--------~~~~~~r~~~~~~-----g~L~I~~  134 (167)
                      +....+.+|++|+|+|.+.+.. ...+.+.|+|+. +..   +....        .+...+|+.+..+     ..|.|++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (220)
T 2fbj_H            7 SGGGLVQPGGSLKLSCAASGFD-FSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK   85 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred             CCCeEecCCCcEEEEEEecCcc-CCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECC
Confidence            3456788999999999997431 025789999853 111   11100        0012468877643     3799999


Q ss_pred             cCcCCCCcceEEEeeecC------cceEEEeee
Q psy12724        135 VGPEDGYKSYQCRTKHRL------TGETRLSAT  161 (167)
Q Consensus       135 v~~~D~~G~Y~C~a~n~~------~~~~~l~~~  161 (167)
                      ++.+|+ |.|.|.+.|..      ...+.|.+.
T Consensus        86 v~~~Ds-G~Y~C~~~~~~~~~~~~~~~~~L~V~  117 (220)
T 2fbj_H           86 VRSEDT-ALYYCARLHYYGYNAYWGQGTLVTVS  117 (220)
T ss_dssp             CCGGGC-EEEEEEEEETTTEEEEECCCEEEEEC
T ss_pred             CChhhC-EEEEEEEeccccccceecCCEEEEec
Confidence            999999 99999999863      334566664

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=98.92  E-value=3.2e-09  Score=72.81  Aligned_cols=76  Identities=24%  Similarity=0.327  Sum_probs=51.5

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEee------eecCCceEEEcc---CC--eEEEeecCc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDM------TESTDGKYLVLP---SG--ELHIRDVGP  137 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~------~~~~~~r~~~~~---~g--~L~I~~v~~  137 (167)
                      ....+.+|++|+|+|.+...  .+.+.+.|+|.. +..   +....      .+...+|+.+..   ++  .|.|++++.
T Consensus         8 ~~~~~~~G~~vtL~C~~~~~--~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~   85 (116)
T 1tvd_A            8 PDQTVASGSEVVLLCTYDTV--YSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRT   85 (116)
T ss_dssp             CCEEEETTCCEEECCEEECC--SSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCG
T ss_pred             CcEEEecCCeEEEEeEeEcC--CCCcEEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEecCCCEEEEEEccCCh
Confidence            44678899999999998532  145678998853 111   11100      001246777642   22  699999999


Q ss_pred             CCCCcceEEEeeec
Q psy12724        138 EDGYKSYQCRTKHR  151 (167)
Q Consensus       138 ~D~~G~Y~C~a~n~  151 (167)
                      +|+ |.|.|.+.+.
T Consensus        86 ~Ds-G~Y~C~~~~~   98 (116)
T 1tvd_A           86 EDS-ATYYCAFTLP   98 (116)
T ss_dssp             GGC-EEEEEEEECT
T ss_pred             HHC-EEEEEEEeCC
Confidence            999 9999999984

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=98.92  E-value=9.4e-09  Score=78.01  Aligned_cols=68  Identities=19%  Similarity=0.338  Sum_probs=43.3

Q ss_pred             EeCCcEEEEeeeCCccCCc-ceeEEEEeCCCeeeEEee---eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         78 LKGNSAVLKCHIPSFVADY-VAVESWISDQGEELFVDM---TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        78 ~~G~~a~l~C~~~~~~~~p-~p~i~W~k~~~~~l~~~~---~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..|+.+.|.|.+.+..  | ...++|+|++ ..+....   ....++.|.+.  ..|.|.+....|  |.|+|.|.|..
T Consensus       145 ~~g~~v~L~C~~~~~~--P~~~~v~W~~~g-~~~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~~~--g~ytC~v~~~~  216 (232)
T 3qhz_H          145 TSGGTAALGCLVKDYF--PEPVTVSWNSGA-LTSGVHTFPAVLQSSGLYSLS--SVVTVPSSSLGT--QTYICNVNHKP  216 (232)
T ss_dssp             ---CEEEEEEEEEEEB--SSCCEEEEGGGT-BCTTEEECCCEECTTSCEEEE--EEEEEEGGGGGT--CCCEEEEEEGG
T ss_pred             cCCCcEEEEEEEeeEe--CCCeEEEEEECC-EecceeeccceeCCCCCEEEE--EEEEEchhhcCC--CEEEEEEEeCC
Confidence            3588999999997641  3 3357899987 3221000   01224445442  469999988877  89999999986

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=98.92  E-value=5.8e-09  Score=71.37  Aligned_cols=74  Identities=22%  Similarity=0.341  Sum_probs=50.0

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ce-e--eEEeee----e--cC-CceEEEccC--CeEEEeecCcCCC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GE-E--LFVDMT----E--ST-DGKYLVLPS--GELHIRDVGPEDG  140 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~-~--l~~~~~----~--~~-~~r~~~~~~--g~L~I~~v~~~D~  140 (167)
                      +..+.+|++|+|+|.+.+.   +.+.+.|+|.. +. +  +.....    .  .. ++||.+..+  ..|.|++++.+|+
T Consensus        10 ~~~v~~G~~vtL~C~~~~~---~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~L~I~~~~~~Ds   86 (112)
T 1fo0_B           10 WRLVPRGQAVNLRCILKNS---QYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQG   86 (112)
T ss_dssp             EEECCTTCCEEEEEEESCT---TCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSC
T ss_pred             eEEEecCCcEEEEEEeCCC---CCceEEEEEECCCCCCEEEEEEeCCCceecCccccCCEEEEcCCCCeEEEcCCCHhHC
Confidence            3567799999999998642   45678999853 11 1  111000    0  01 267765421  2899999999999


Q ss_pred             CcceEEEeeec
Q psy12724        141 YKSYQCRTKHR  151 (167)
Q Consensus       141 ~G~Y~C~a~n~  151 (167)
                       |.|.|.+.+.
T Consensus        87 -g~Y~C~~~~~   96 (112)
T 1fo0_B           87 -RTLYCTCSAD   96 (112)
T ss_dssp             -EEEEEEEESS
T ss_pred             -EEEEEEEEcC
Confidence             9999999875

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.91  E-value=3.8e-09  Score=81.77  Aligned_cols=76  Identities=14%  Similarity=0.061  Sum_probs=53.0

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC---
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL---  152 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~---  152 (167)
                      .+.+|++++|.|.+.+    +.+.+.|+|++ ..+...    .........++.|.|.+++.+|+ |.|+|.+.|..   
T Consensus        17 ~v~~G~~VtL~C~~~~----~~~~~~w~k~g-~~~~~~----~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~~~~~~~~s   86 (242)
T 1p6f_A           17 MVPKEKQVTICCQGNY----GAVEYQLHFEG-SLFAVD----RPKPPERINKVKFYIPDMNSRMA-GQYSCIYRVGELWS   86 (242)
T ss_dssp             EEETTCCEEEEEECCT----TCCEEEEEETT-EEEEEE----CCSSCTTCCEEEEEECSCCGGGC-EEEEEEEEETTEEC
T ss_pred             ccCCCCcEEEEEeeCC----CCcEEEEEECC-Cccccc----cccccCCcceeEEEecCCCcccC-eEEEEEEecCCccc
Confidence            7889999999999863    34578999997 444311    11111112356899999999999 99999998752   


Q ss_pred             --cceEEEeee
Q psy12724        153 --TGETRLSAT  161 (167)
Q Consensus       153 --~~~~~l~~~  161 (167)
                        +..+.|.++
T Consensus        87 ~~S~~~~L~V~   97 (242)
T 1p6f_A           87 EPSNLLDLVVT   97 (242)
T ss_dssp             CCCCCEEEEEE
T ss_pred             cCCcceEEEee
Confidence              344555554

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=98.91  E-value=6.1e-09  Score=71.14  Aligned_cols=79  Identities=19%  Similarity=0.242  Sum_probs=51.7

Q ss_pred             cCeEEEeCCcEEEEeeeCCccC--CcceeEEEEeCCC-e-e--eEEe---eeecCCceEEEccC---CeEEEeecCcCCC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVA--DYVAVESWISDQG-E-E--LFVD---MTESTDGKYLVLPS---GELHIRDVGPEDG  140 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~--~p~p~i~W~k~~~-~-~--l~~~---~~~~~~~r~~~~~~---g~L~I~~v~~~D~  140 (167)
                      .+..+.+|++|+|+|.+.+...  ...+.+.|+|... . +  +...   ..+...+|+....+   ..|.|++++.+|+
T Consensus         9 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds   88 (113)
T 1dlf_L            9 LSLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDL   88 (113)
T ss_dssp             SEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             CEEEEcCCCCEEEEEEccccccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEccCCEEEEEECCCChHHC
Confidence            3467889999999999974310  0136789998531 1 1  2110   00012457765432   2699999999999


Q ss_pred             CcceEEEeeecC
Q psy12724        141 YKSYQCRTKHRL  152 (167)
Q Consensus       141 ~G~Y~C~a~n~~  152 (167)
                       |.|.|.+.+..
T Consensus        89 -G~Y~C~~~~~~   99 (113)
T 1dlf_L           89 -GVYFCSQSTHV   99 (113)
T ss_dssp             -EEEEEEECSSS
T ss_pred             -EEEEEEEecCC
Confidence             99999999863

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.91  E-value=1.3e-09  Score=93.15  Aligned_cols=75  Identities=24%  Similarity=0.381  Sum_probs=56.4

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCee-eEEeeee----cCCceEEEccCCeEEEeecCcCCCCcceEEEee
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEE-LFVDMTE----STDGKYLVLPSGELHIRDVGPEDGYKSYQCRTK  149 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~-l~~~~~~----~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~  149 (167)
                      ..+.+|++++|+|.+..  +.|.|.++|+|++... +......    ...+|+.+..+|.|.|++++.+|+ |.|+|.+.
T Consensus       376 ~~~~~G~~v~L~C~~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~-G~Y~C~~~  452 (581)
T 3o3u_N          376 ITARIGEPLVLKCKGAP--KKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDE-GIFRCQAM  452 (581)
T ss_dssp             EEEETTSCEEECCTTCC--SSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGC-EEEEEEEE
T ss_pred             cceecCCcEEEeeeecC--CCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccC-eEEEEEEE
Confidence            56789999999999832  4588999999986311 1100000    014577788889999999999999 99999999


Q ss_pred             ecC
Q psy12724        150 HRL  152 (167)
Q Consensus       150 n~~  152 (167)
                      |..
T Consensus       453 n~~  455 (581)
T 3o3u_N          453 NRN  455 (581)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            976

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.91  E-value=3.9e-09  Score=78.45  Aligned_cols=82  Identities=17%  Similarity=0.266  Sum_probs=55.2

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeE-Eeee-----ecCCceEEEcc---CCeEEEeecCcCCCCcc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELF-VDMT-----ESTDGKYLVLP---SGELHIRDVGPEDGYKS  143 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~-~~~~-----~~~~~r~~~~~---~g~L~I~~v~~~D~~G~  143 (167)
                      +..+.+|++|.|+|.+.     |.+.+.|+|++ +..+. ....     ....+|+.+..   ++.|.|++++.+|+ |.
T Consensus         9 ~~~v~~G~~v~L~C~~~-----~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~-G~   82 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT-----SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDE-AV   82 (211)
T ss_dssp             EEEECTTCEEEEEEECC-----CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGC-EE
T ss_pred             eEEEcCCCCEEEEEEEC-----CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHC-EE
Confidence            45678999999999985     67789999942 11111 0000     00235665432   34799999999999 99


Q ss_pred             eEEEeeecC-----cceEEEeee
Q psy12724        144 YQCRTKHRL-----TGETRLSAT  161 (167)
Q Consensus       144 Y~C~a~n~~-----~~~~~l~~~  161 (167)
                      |+|.|.|..     ...+.|.+.
T Consensus        83 Y~C~~~~~~~~~~~~~~~~l~V~  105 (211)
T 3tv3_L           83 YYCGSLVGNWDVIFGGGTKLTVL  105 (211)
T ss_dssp             EEEEEEETTTEEEECCCEEEEEC
T ss_pred             EEEEEecCCCceeECCCceEEEe
Confidence            999999964     334555554

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=98.90  E-value=3.4e-08  Score=74.87  Aligned_cols=142  Identities=14%  Similarity=0.102  Sum_probs=81.6

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc---eE---E---EeeeEEEecC----------
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD---FV---V---SQSYTVNIMD----------   74 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~---~v---~---~g~y~c~~~~----------   74 (167)
                      ++.|+++.|.+|+++.|.|.+.....+   .+.|...-++....++..   +.   +   .+.|.|....          
T Consensus         6 ~v~P~~~~V~~G~Sv~l~Cs~~c~~p~---~~~~~t~l~~~~~~~g~~~~~~~ls~vs~d~~~~~C~~~c~~~~~~~~v~   82 (196)
T 3bn3_B            6 DLQPRVAFVERGGSLWLNCSTNCPRPE---RGGLETSLRRNGTQRGLRWLARQLVDIREPETQPVCFFRCARRTLQARGL   82 (196)
T ss_dssp             EEESSEEEEETTEEEEEEEEECCSSCS---EEEEECSSEEEEEEEETTEEEEEEEEECSSEECCEEEEEETTEEEEEECE
T ss_pred             EEcCCCcEEcCCCeEEEEEeCCCCCCC---ccEEEEccCCeeEccccCceEEEEEEEccCCCceEEEEECCCCceEEEEE
Confidence            467788999999999999999643322   477754322222222211   11   1   3558887521          


Q ss_pred             ----------------eEEEeCCcEEEEeeeCCccCCcce--eEEEEeCCCeeeEEeeeecCCce-EEEccCCeEEEeec
Q psy12724         75 ----------------EHVLKGNSAVLKCHIPSFVADYVA--VESWISDQGEELFVDMTESTDGK-YLVLPSGELHIRDV  135 (167)
Q Consensus        75 ----------------~~v~~G~~a~l~C~~~~~~~~p~p--~i~W~k~~~~~l~~~~~~~~~~r-~~~~~~g~L~I~~v  135 (167)
                                      ..+.+|+.++|.|.+.+.  .|.+  .|+|+|++ ..+.....  .+.. -.....-.+.+.. 
T Consensus        83 l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~--~P~~~L~i~wlkg~-~~l~~~~~--~~~~~~~~~~t~~~~~~~-  156 (196)
T 3bn3_B           83 IRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGA--GPRASLTLTLLRGA-QELIRRSF--AGEPPRARGAVLTATVLA-  156 (196)
T ss_dssp             EEEEBCCCCCEECCCCSSEETTSEEEEEEEETTC--BCGGGEEEEEEETT-EEEEEEEC--TTSCTTCCCEEEEEEEEC-
T ss_pred             EEEecCCCcCEEccCCccccCCCcEEEEEEeCCc--cCCCCcEEEEEeCC-EEeecccc--ccccccccceeEEEEEee-
Confidence                            126789999999999864  3543  48999997 56542210  0100 0000001344444 


Q ss_pred             CcCCCCc-ceEEEeeecCc--c-e-EEEeeeCCee
Q psy12724        136 GPEDGYK-SYQCRTKHRLT--G-E-TRLSATKGRL  165 (167)
Q Consensus       136 ~~~D~~G-~Y~C~a~n~~~--~-~-~~l~~~~~~~  165 (167)
                      ..+|. | .|+|.|.|.+.  + . .+-+..|.+|
T Consensus       157 ~r~D~-g~~~sC~A~l~l~~~G~~l~~~~s~p~~L  190 (196)
T 3bn3_B          157 RREDH-GANFSCRAELDLRPHGLGLFENSSAPREL  190 (196)
T ss_dssp             CGGGT-TCEEEEEEEEECGGGTSCEEEEECCCEEC
T ss_pred             eeccC-CCeEEEEEEccCCccCCCccccccCCeEE
Confidence            45564 6 99999999873  1 2 3444445544

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=98.90  E-value=6.8e-09  Score=79.55  Aligned_cols=67  Identities=19%  Similarity=0.327  Sum_probs=44.4

Q ss_pred             eCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEee---eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDM---TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~---~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .|+.+.|.|.+.+.  .|.+ .++|+|++ ..+....   ....++.|.+.  ..|.|.+...+|  |.|+|.|.|..
T Consensus       154 ~g~~v~l~C~~~~~--~p~~~~v~W~~~g-~~~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~~~--~~ytC~v~h~~  224 (239)
T 3tv3_H          154 SGGTAALGCLVKDY--FPEPVTVSWNSGA-LTSGVHTFPAVLQSSGLYSLS--SVVTVPSSSLGT--QTYICNVNHKP  224 (239)
T ss_dssp             -TTEEEEEEEEEEE--BSSCCEEEEGGGT-BCTTEEECCCEECTTSCEEEE--EEEEEEGGGTTT--CCCEEEEEEGG
T ss_pred             cCCcEEEEEEEeeE--eCCCeEEEEEECC-ccCceEecCceECCCCCEEEE--EEEEEchhhcCC--CEEEEEEEECC
Confidence            58899999999764  2544 47899987 3221100   01234455442  468899887766  89999999986

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.89  E-value=7.5e-09  Score=79.66  Aligned_cols=75  Identities=17%  Similarity=0.369  Sum_probs=51.9

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee--eEEeee-------ecCCc-eEEEccCCe--EEEeecCcCC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE--LFVDMT-------ESTDG-KYLVLPSGE--LHIRDVGPED  139 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~--l~~~~~-------~~~~~-r~~~~~~g~--L~I~~v~~~D  139 (167)
                      .+..+.+|++|+|+|.+.+   .+.+.+.|+|.. +..  +.-...       ....+ ||.+..++.  |.|++++.+|
T Consensus         9 ~~v~v~~G~~v~L~C~~~~---~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~D   85 (253)
T 3to4_D            9 RWRLVPRGQAVNLRCILKN---SQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQ   85 (253)
T ss_dssp             SEEEEESSCCEEEEEECSC---TTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCSS
T ss_pred             CeEEEeCCCcEEEEEEeCC---CCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChhh
Confidence            3467889999999999874   477889999832 111  110000       00122 787766554  9999999999


Q ss_pred             CCcceEEEeeec
Q psy12724        140 GYKSYQCRTKHR  151 (167)
Q Consensus       140 ~~G~Y~C~a~n~  151 (167)
                      + |.|.|.+.+.
T Consensus        86 s-G~Y~C~~~~~   96 (253)
T 3to4_D           86 G-RTLYCTSSAD   96 (253)
T ss_dssp             C-EEEEEEEECS
T ss_pred             C-eEEEEEEecC
Confidence            9 9999999854

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.89  E-value=1.6e-09  Score=80.91  Aligned_cols=77  Identities=17%  Similarity=0.244  Sum_probs=53.4

Q ss_pred             eEEEeCCcEEEEeeeCCcc--CCcceeEEEEeCCCeeeEEee------eecCCceEEEcc------CCeEEEeecCcCCC
Q psy12724         75 EHVLKGNSAVLKCHIPSFV--ADYVAVESWISDQGEELFVDM------TESTDGKYLVLP------SGELHIRDVGPEDG  140 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~--~~p~p~i~W~k~~~~~l~~~~------~~~~~~r~~~~~------~g~L~I~~v~~~D~  140 (167)
                      ..+.+|+++.|+|.+.+..  ....+.++|+|++........      .....+|+.+..      ++.|.|.+++.+|+
T Consensus         5 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~   84 (222)
T 4i0k_A            5 VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDE   84 (222)
T ss_dssp             CCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGC
T ss_pred             EEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccC
Confidence            4567899999999987531  012378999998743211111      001245666654      56899999999999


Q ss_pred             CcceEEEeeecC
Q psy12724        141 YKSYQCRTKHRL  152 (167)
Q Consensus       141 ~G~Y~C~a~n~~  152 (167)
                       |.|+|.+.|..
T Consensus        85 -G~Y~C~~~~~~   95 (222)
T 4i0k_A           85 -GSYTCFVSIQD   95 (222)
T ss_dssp             -SCEEEEEEECC
T ss_pred             -EEEEEEEEeCC
Confidence             99999999854

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.88  E-value=5.1e-09  Score=79.40  Aligned_cols=77  Identities=18%  Similarity=0.273  Sum_probs=53.9

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcc----eeEEEEeCC-Cee---eEEee-------eecCCceEEEcc-----CCeEE
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYV----AVESWISDQ-GEE---LFVDM-------TESTDGKYLVLP-----SGELH  131 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~----p~i~W~k~~-~~~---l~~~~-------~~~~~~r~~~~~-----~g~L~  131 (167)
                      +.+..+.+|++|.|+|.+.+.   |.    +.+.|+|++ +..   +....       .+...+|+.+..     ++.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~---~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   83 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSFSGF---SIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMK   83 (228)
T ss_dssp             ECCSEECTTCCEEEEEEEESS---CHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEE
T ss_pred             CCceeecCCCeEEEEEEEeCc---ccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEE
Confidence            455688899999999999743   43    789998853 111   11100       001246787653     25899


Q ss_pred             EeecCcCCCCcceEEEeeecC
Q psy12724        132 IRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       132 I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      |++++.+|+ |.|.|.+.|..
T Consensus        84 I~~v~~~D~-G~Y~C~~~~~~  103 (228)
T 3bae_H           84 ITSVDTADT-ATYYCARRGFY  103 (228)
T ss_dssp             ECSCCGGGC-EEEEEEEEEES
T ss_pred             EcCCCcccC-EEEEEEEecCC
Confidence            999999999 99999999853

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=98.88  E-value=1.4e-08  Score=69.48  Aligned_cols=87  Identities=18%  Similarity=0.211  Sum_probs=56.2

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-e---eeEEee-------eecCCceEEEcc---CC--eEEEeecCc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-E---ELFVDM-------TESTDGKYLVLP---SG--ELHIRDVGP  137 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~---~l~~~~-------~~~~~~r~~~~~---~g--~L~I~~v~~  137 (167)
                      ...+.+|++|+|+|.+......+.+.+.|+|... .   .+....       .+...+|+.+..   ++  .|.|++++.
T Consensus         7 ~~~~~~G~~v~L~C~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~   86 (116)
T 3bj9_1            7 AMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISELQP   86 (116)
T ss_dssp             EEEEETTCCEEEEEEECSSSCGGGCCEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             cEEEcCCCcEEEEEEeecCccCCCceEEEEEeCCCCCcEEEEEEecCCCceeCccCCCcEEEEecCCCceEEEEECCCCh
Confidence            3577899999999998632111456789988531 1   121100       001235776653   24  799999999


Q ss_pred             CCCCcceEEEeeecC----cceEEEeee
Q psy12724        138 EDGYKSYQCRTKHRL----TGETRLSAT  161 (167)
Q Consensus       138 ~D~~G~Y~C~a~n~~----~~~~~l~~~  161 (167)
                      +|+ |.|.|.+.+..    ..-++|.+.
T Consensus        87 ~Ds-G~Y~C~~~~~~~~~fg~gT~L~V~  113 (116)
T 3bj9_1           87 EDE-AMYYCAMGARSTHVFGSGTQLTVL  113 (116)
T ss_dssp             GGC-EEEEEEECCSSCCEECCCEEEEEE
T ss_pred             hHC-EEEEEEEeCCCCcEECCCEEEEEe
Confidence            999 99999998753    344555554

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=98.88  E-value=7.5e-09  Score=71.10  Aligned_cols=74  Identities=18%  Similarity=0.220  Sum_probs=50.2

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ce-e--eEEee----eecCCceEEEc--c-C--CeEEEeecCcCCC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GE-E--LFVDM----TESTDGKYLVL--P-S--GELHIRDVGPEDG  140 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~-~--l~~~~----~~~~~~r~~~~--~-~--g~L~I~~v~~~D~  140 (167)
                      ...+.+|++|+|+|.+.+..  +.+.+.|+|.. +. +  +....    .+...+|+.+.  . +  ..|.|++++.+|+
T Consensus         9 ~~~~~~G~~vtL~C~~~~~~--~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~Ds   86 (116)
T 1fo0_A            9 SISVMEKTTVTMDCVYETQD--SSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDS   86 (116)
T ss_dssp             EEEEETTCCEEECCEECCCC--SSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             cEEEecCCcEEEEeEecCCC--CCeEEEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEEeCCCCEEEEEECCCChhhC
Confidence            45788999999999997421  44578999853 11 1  11110    00113677763  2 2  2699999999999


Q ss_pred             CcceEEEeee
Q psy12724        141 YKSYQCRTKH  150 (167)
Q Consensus       141 ~G~Y~C~a~n  150 (167)
                       |.|.|.+.+
T Consensus        87 -G~Y~C~~~~   95 (116)
T 1fo0_A           87 -AVYFCAMRG   95 (116)
T ss_dssp             -EEEEEEEEC
T ss_pred             -EEEEEEEEc
Confidence             999999987

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=98.88  E-value=6.3e-09  Score=70.97  Aligned_cols=73  Identities=15%  Similarity=0.178  Sum_probs=50.0

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-e-e--eEEeee---ecCCceEEEcc-----CCeEEEeecCcCCC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-E-E--LFVDMT---ESTDGKYLVLP-----SGELHIRDVGPEDG  140 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~-~--l~~~~~---~~~~~r~~~~~-----~g~L~I~~v~~~D~  140 (167)
                      ....+.+|++|+|+|.+.+.   +.+.+.|+|... . +  +.....   ....+|+.+..     +..|.|++++.+|+
T Consensus         8 ~~~~~~~G~~v~L~C~~~~~---~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds   84 (112)
T 2z35_A            8 GQVALSEEDFLTIHCNYSAS---GYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDS   84 (112)
T ss_dssp             SEEEEETTCCEEECCEEECS---SCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCSTTC
T ss_pred             CcEEEcCCCCEEEEEEECCC---CCCeEEEEEECCCCCcEEeEEEecccCCccCCCEEEEEcCCCCEEEEEECCCChhhC
Confidence            34578899999999998642   556799998531 1 1  211100   00135777641     23699999999999


Q ss_pred             CcceEEEee
Q psy12724        141 YKSYQCRTK  149 (167)
Q Consensus       141 ~G~Y~C~a~  149 (167)
                       |.|.|.+.
T Consensus        85 -G~Y~C~~~   92 (112)
T 2z35_A           85 -AVYYCALS   92 (112)
T ss_dssp             -SEEEEEEE
T ss_pred             -EEEEEEEE
Confidence             99999998

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=98.88  E-value=7.9e-09  Score=71.41  Aligned_cols=87  Identities=15%  Similarity=0.206  Sum_probs=56.5

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-e-e-eEEee----eecCCceEEEccC---CeEEEeecCcCCCCcce
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-E-E-LFVDM----TESTDGKYLVLPS---GELHIRDVGPEDGYKSY  144 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~-~-l~~~~----~~~~~~r~~~~~~---g~L~I~~v~~~D~~G~Y  144 (167)
                      ..+.+|++|+|+|.+.+......+.+.|+|... . + +.-..    .+...+|+.+..+   ..|.|++++.+|+ |.|
T Consensus        10 ~~~~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~~Ds-G~Y   88 (120)
T 1oaq_L           10 LTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDE-AIY   88 (120)
T ss_dssp             EEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGC-EEE
T ss_pred             EEEcCCCCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEecCCCeEEEEECCCChhhC-eEE
Confidence            567899999999999743100146789988531 1 1 11100    0012457765532   2699999999999 999


Q ss_pred             EEEeeecC----cceEEEeeeC
Q psy12724        145 QCRTKHRL----TGETRLSATK  162 (167)
Q Consensus       145 ~C~a~n~~----~~~~~l~~~~  162 (167)
                      .|.+.+..    ...++|++.+
T Consensus        89 ~C~~~~~~~~~fg~gt~L~V~~  110 (120)
T 1oaq_L           89 FCALWYSNHLVFGGGTKLTVLG  110 (120)
T ss_dssp             EEEEEETTEEEECCCEEEEECC
T ss_pred             EEEEccCCCcEECCCEEEEEcC
Confidence            99998763    4456776654

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.88  E-value=6.6e-09  Score=80.05  Aligned_cols=77  Identities=13%  Similarity=0.180  Sum_probs=46.9

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeC---CCeeeEEeee---------ecCCceEEEc-----cCCeEEEee
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISD---QGEELFVDMT---------ESTDGKYLVL-----PSGELHIRD  134 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~---~~~~l~~~~~---------~~~~~r~~~~-----~~g~L~I~~  134 (167)
                      +.+..+.+|++|+|+|.+.+   .|.+.+.|+|.   +...+.....         +.-.+|+...     .+..|.|++
T Consensus         9 p~~~~v~~G~~v~L~C~~~~---~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   85 (259)
T 3omz_A            9 TKSVIRQTGSSAEITCDLAE---GSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRN   85 (259)
T ss_dssp             --CEEEETTCCEEEECCC--------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESS
T ss_pred             CceeEecCCCcEEEEEEEcc---CCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECC
Confidence            44578899999999999974   47889999982   2111111110         0001122221     234699999


Q ss_pred             cCcCCCCcceEEEeeecC
Q psy12724        135 VGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       135 v~~~D~~G~Y~C~a~n~~  152 (167)
                      ++.+|+ |.|.|.+.|..
T Consensus        86 v~~~Ds-G~Y~C~~~~~~  102 (259)
T 3omz_A           86 LIENDS-GVYYCATWDQN  102 (259)
T ss_dssp             CCGGGC-EEEEEEEECTT
T ss_pred             CCcccC-EEEEEEEeeCC
Confidence            999999 99999999863

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.88  E-value=8.9e-09  Score=80.12  Aligned_cols=86  Identities=20%  Similarity=0.292  Sum_probs=58.4

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCc------ceeEEEEeCC-Ceee--EEee----eecCCceEEEccC---CeEEEeec
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADY------VAVESWISDQ-GEEL--FVDM----TESTDGKYLVLPS---GELHIRDV  135 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p------~p~i~W~k~~-~~~l--~~~~----~~~~~~r~~~~~~---g~L~I~~v  135 (167)
                      +.+..+.+|++|+|+|.+.+.   |      .+.+.|+|++ +..+  .-..    .+...+|+.+..+   +.|.|+++
T Consensus        12 p~~v~v~~G~~v~L~C~~~~~---~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v   88 (264)
T 2gjj_A           12 PSSLPVSVGEKVTMTCKSSQT---LLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSV   88 (264)
T ss_dssp             CSEEEEETTCCEEEEEEESSC---CEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred             CCeEEecCCCcEEEEeEcCCc---ccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCC
Confidence            345678899999999999743   5      6889999853 1111  1000    0012467766532   37999999


Q ss_pred             CcCCCCcceEEEeeecC----cceEEEeee
Q psy12724        136 GPEDGYKSYQCRTKHRL----TGETRLSAT  161 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n~~----~~~~~l~~~  161 (167)
                      +.+|+ |.|.|.+.|..    +..+.|.+.
T Consensus        89 ~~~Ds-G~Y~C~~~~~~~~~~~~~~~L~V~  117 (264)
T 2gjj_A           89 KAEDL-AVYYCQQYSNYPWTFGGGTRLEIK  117 (264)
T ss_dssp             CGGGC-EEEEEEECSSSSCEECCCEEEEEE
T ss_pred             CHHHC-EEEEEEEecCCccEecCCEEEEEE
Confidence            99999 99999999863    334556554

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.88  E-value=5.1e-08  Score=74.91  Aligned_cols=129  Identities=19%  Similarity=0.253  Sum_probs=80.6

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cc---eeeec--------CCc------------eE-----
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GG---QYQID--------NQD------------FV-----   63 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~---~~~~~--------~~~------------~v-----   63 (167)
                      ....+..+.+.+|+++.|.|.+.+.... -+.+.|+|.+ ++   .+..+        ..|            .+     
T Consensus         4 v~q~p~~v~v~~G~~vtL~C~~s~~~~~-~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   82 (229)
T 1hxm_A            4 LVPEHQTVPVSIGVPATLRCSMKGEAIG-NYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAP   82 (229)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGG-GSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSC
T ss_pred             cEeCCCEEEEcCCCCEEEEeEecCCccC-cceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcC
Confidence            4556788999999999999999854321 2469998753 21   12110        011            11     


Q ss_pred             ---EEeeeEEEecCe------------------EEE-------------eCCcEEEEeeeCCccCCcce-eEEEEeCCCe
Q psy12724         64 ---VSQSYTVNIMDE------------------HVL-------------KGNSAVLKCHIPSFVADYVA-VESWISDQGE  108 (167)
Q Consensus        64 ---~~g~y~c~~~~~------------------~v~-------------~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~  108 (167)
                         .+|.|.|.+.+.                  .|.             .+..+.|.|.+.++  .|.+ .++|+++ . 
T Consensus        83 ~~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~~~~~~~L~C~~~g~--~P~~i~v~W~~~-~-  158 (229)
T 1hxm_A           83 SERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFVMKNGTNVACLVKEF--YPKDIRINLVSS-K-  158 (229)
T ss_dssp             CGGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEEEEETTEEEEEEESC--BSSCCEEEEECS-S-
T ss_pred             CHhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEEcCCCCeEEEEEEEE--eCCCEEEEEecC-C-
Confidence               169999986431                  111             12235889999764  2544 7899998 4 


Q ss_pred             eeEEeeeecCCceEEEccCCeEEEeecCc-CCCCcceEEEeeecC
Q psy12724        109 ELFVDMTESTDGKYLVLPSGELHIRDVGP-EDGYKSYQCRTKHRL  152 (167)
Q Consensus       109 ~l~~~~~~~~~~r~~~~~~g~L~I~~v~~-~D~~G~Y~C~a~n~~  152 (167)
                      .+..     .........+|.+.|..... +|. |.|+|.+.|..
T Consensus       159 ~~~~-----~~~~~~~~~dg~y~~~~~~~~~~~-~~ytC~V~h~~  197 (229)
T 1hxm_A          159 KITE-----FDPAIVISPSGKYNAVKLGKYEDS-NSVTCSVQHDN  197 (229)
T ss_dssp             EEEE-----CCCEEEECTTSSEEEEEEEEETTT-TTCEEEEEETT
T ss_pred             EEec-----CccceEECCCCcEEEEECcccCCC-CcEEEEEEeCC
Confidence            4432     12223334567777765544 787 99999999986

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=98.88  E-value=1.1e-08  Score=79.30  Aligned_cols=67  Identities=18%  Similarity=0.332  Sum_probs=43.6

Q ss_pred             eCCcEEEEeeeCCccCCc-ceeEEEEeCCCeeeE-Eee--eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADY-VAVESWISDQGEELF-VDM--TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p-~p~i~W~k~~~~~l~-~~~--~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .|+.+.|.|.+.+..  | .+.++|++++ ..+. ...  ....++.|.+.  ..|.|......|  |.|+|.+.|..
T Consensus       155 ~g~~~~L~C~~~~~~--P~~~~v~W~~~g-~~~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~~~--~~ytC~v~h~~  225 (248)
T 3u2s_H          155 SGGTAALGCLVKDYF--PEPVTVSWNSGA-LTSGVHTFPAVLQSSGLYSLS--SVVTVPSSSLGT--QTYICNVNHKP  225 (248)
T ss_dssp             --CEEEEEEEEEEEB--SSCCEEEEGGGT-BCTTEEECCCEECTTSCEEEE--EEEEEEGGGBTT--BCCEEEEEEGG
T ss_pred             CCCcEEEEEEEeeEE--CCCeEEEEeECC-ccCceeecCceECCCCCEEEE--EEEEEChhhcCC--CeEEEEEEECC
Confidence            478999999997642  4 4578999987 3221 000  01234555543  368888887766  89999999986

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.88  E-value=1.1e-08  Score=76.80  Aligned_cols=88  Identities=18%  Similarity=0.296  Sum_probs=58.1

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEeee-----------ecCCceEEEccCC-----eEEE
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVDMT-----------ESTDGKYLVLPSG-----ELHI  132 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~~~-----------~~~~~r~~~~~~g-----~L~I  132 (167)
                      +.+..+.+|++|.|+|.+.+. ..+.+.+.|+|.. +...  .-...           +...+|+.+..++     .|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (221)
T 3m8o_H            7 SGGGLVQPGGSLKLSCAASGF-TLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQM   85 (221)
T ss_dssp             ESCEEECTTCCEEEEEEEESS-CGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEE
T ss_pred             cCCEEEcCCCCEEEEEEcccc-cccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEE
Confidence            345678899999999999743 1236789999743 1111  10000           0123678776443     5999


Q ss_pred             eecCcCCCCcceEEEeeecC-----cceEEEeee
Q psy12724        133 RDVGPEDGYKSYQCRTKHRL-----TGETRLSAT  161 (167)
Q Consensus       133 ~~v~~~D~~G~Y~C~a~n~~-----~~~~~l~~~  161 (167)
                      ++++.+|+ |.|.|.+.|..     ...+.|.+.
T Consensus        86 ~~v~~~Ds-G~Y~C~~~~~~~~~~~~~~~~l~V~  118 (221)
T 3m8o_H           86 NSLKSDDT-AMYYCVIRGDVYNRQWGQGTLVTVS  118 (221)
T ss_dssp             CSCCGGGC-EEEEEEEESCTTCCCBBCCEEEEEC
T ss_pred             CCCCHHHC-EEEEEEEECCChhheECCCEEEEEe
Confidence            99999999 99999998852     344566553

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.87  E-value=6.6e-09  Score=78.23  Aligned_cols=74  Identities=19%  Similarity=0.367  Sum_probs=51.8

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ce-e-eEEee--eecCCceEEEccC------CeEEEeecCcCCCC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GE-E-LFVDM--TESTDGKYLVLPS------GELHIRDVGPEDGY  141 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~-~-l~~~~--~~~~~~r~~~~~~------g~L~I~~v~~~D~~  141 (167)
                      .+..+.+|++|.|+|.+.+.   + +.+.|+|.+ +. . +.-..  .+...+|+.+..+      ..|.|++++.+|+ 
T Consensus         9 ~~v~v~~G~~v~L~C~~~~~---~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~-   83 (207)
T 1ypz_E            9 SALSLHEGTDSALRCNFTTT---M-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDS-   83 (207)
T ss_dssp             SEEEEETTCCEEEEEEESSC---C-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGC-
T ss_pred             CeEEEccCCcEEEEEEEeCC---C-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHC-
Confidence            34678899999999999742   2 479999853 11 1 11000  0012467877643      3799999999999 


Q ss_pred             cceEEEeeec
Q psy12724        142 KSYQCRTKHR  151 (167)
Q Consensus       142 G~Y~C~a~n~  151 (167)
                      |.|.|.+.|.
T Consensus        84 G~Y~C~~~~~   93 (207)
T 1ypz_E           84 GTYFCAADTW   93 (207)
T ss_dssp             EEEEEEEECB
T ss_pred             EEEEEEEecC
Confidence            9999999886

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=98.87  E-value=1e-08  Score=71.71  Aligned_cols=90  Identities=18%  Similarity=0.241  Sum_probs=57.9

Q ss_pred             ecCeEEEeCCcEEEEeeeCCcc----CCcceeEEEEeCCCe-----eeEEee-----eecCCceEEEccC-----CeEEE
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFV----ADYVAVESWISDQGE-----ELFVDM-----TESTDGKYLVLPS-----GELHI  132 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~----~~p~p~i~W~k~~~~-----~l~~~~-----~~~~~~r~~~~~~-----g~L~I  132 (167)
                      +.+..+.+|++|.|+|......    ..+.+.+.|+|....     .+....     .+...+|+.+..+     -.|.|
T Consensus        13 p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   92 (132)
T 1nko_A           13 QSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   92 (132)
T ss_dssp             CSEEEEETTCCEEECEEEECCCCTTTTTSCCEEEEEEC-----CCSCSEESCTTCCCCGGGTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEcCCCeEEEEccccCCCccccCCCccEEEEEECCCCCCcccEEEeCCCccccccccCccEEEeCCCCCCceEEEE
Confidence            3456788999999999985210    124567999997521     122110     0012468887643     27999


Q ss_pred             eecCcCCCCcceEEEeeecC------cceEEEeeeC
Q psy12724        133 RDVGPEDGYKSYQCRTKHRL------TGETRLSATK  162 (167)
Q Consensus       133 ~~v~~~D~~G~Y~C~a~n~~------~~~~~l~~~~  162 (167)
                      ++++.+|+ |.|.|.+.+..      ...+.|++++
T Consensus        93 ~~v~~~Ds-G~Y~C~v~~~~~~~~~~~~~~~l~V~~  127 (132)
T 1nko_A           93 RDARMSDA-GRYFFRMEKGNIKWNYKYDQLSVNVTA  127 (132)
T ss_dssp             CSCCGGGC-EEEEEEEEETTEEEECTTSCEEEEEEC
T ss_pred             cccCcccC-eeEEEEEEcCCCcccccCCceEEEecc
Confidence            99999999 99999998752      3355666543

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.87  E-value=6.6e-09  Score=78.63  Aligned_cols=78  Identities=19%  Similarity=0.282  Sum_probs=53.3

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEee--------eecCCceEEEccC-----CeEEEee
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDM--------TESTDGKYLVLPS-----GELHIRD  134 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~--------~~~~~~r~~~~~~-----g~L~I~~  134 (167)
                      +.+..+.+|++|.|+|.+.+.. ...+.+.|+|++ +..   +....        .+...+|+.+..+     ..|.|++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~-~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (223)
T 1dee_B            7 SGGGVVQPGKSLRLSCAASGFT-FSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNS   85 (223)
T ss_dssp             ECCCEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CCCEEEcCCCcEEEEEEecCcc-cCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECC
Confidence            3456788999999999997431 124789999853 111   11100        0012467877642     3799999


Q ss_pred             cCcCCCCcceEEEeeec
Q psy12724        135 VGPEDGYKSYQCRTKHR  151 (167)
Q Consensus       135 v~~~D~~G~Y~C~a~n~  151 (167)
                      ++.+|+ |.|.|.+.|.
T Consensus        86 v~~~D~-G~Y~C~~~~~  101 (223)
T 1dee_B           86 LRAEDT-AVYYCAKVKF  101 (223)
T ss_dssp             CCGGGC-EEEEEEEESS
T ss_pred             CCHHHC-EEEEEEEecc
Confidence            999999 9999999985

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.87  E-value=9.1e-09  Score=78.78  Aligned_cols=77  Identities=21%  Similarity=0.330  Sum_probs=53.4

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEee-------eec-CCceEEEcc-----CCeEEEeec
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDM-------TES-TDGKYLVLP-----SGELHIRDV  135 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~-------~~~-~~~r~~~~~-----~g~L~I~~v  135 (167)
                      .+..+.+|++|.|+|.+.+. ..+.+.+.|+|++ +..   +....       .+. ..+|+.+..     +..|.|+++
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   87 (242)
T 1hxm_B            9 ISSTKTLSKTARLECVVSGI-TISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNV   87 (242)
T ss_dssp             SEEEEETTCCEEEEEEEESS-CTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSC
T ss_pred             ceEEecCCCcEEEEEEeCCc-cccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCC
Confidence            45678899999999998642 1256789999853 111   11100       000 256787653     347999999


Q ss_pred             CcCCCCcceEEEeeec
Q psy12724        136 GPEDGYKSYQCRTKHR  151 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n~  151 (167)
                      +.+|+ |.|.|.+.|.
T Consensus        88 ~~~D~-G~Y~C~~~~~  102 (242)
T 1hxm_B           88 EKQDI-ATYYCALWEA  102 (242)
T ss_dssp             CGGGC-EEEEEEEEEE
T ss_pred             CcccC-EEEEEeeecC
Confidence            99999 9999999986

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.87  E-value=9.6e-09  Score=78.35  Aligned_cols=75  Identities=13%  Similarity=0.232  Sum_probs=52.7

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEee------eecCCceEEEcc----CCeEEEeecCc
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDM------TESTDGKYLVLP----SGELHIRDVGP  137 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~------~~~~~~r~~~~~----~g~L~I~~v~~  137 (167)
                      +.+..+.+|++|.|+|.+..    +.+.+.|+|++ +..   +....      .....+|+.+..    +..|.|++++.
T Consensus         6 p~~v~v~~G~~v~L~C~~~~----~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~   81 (238)
T 1bec_A            6 PRNKVAVTGGKVTLSCQQTN----NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATP   81 (238)
T ss_dssp             CSEEEEETTCCEEEEEEESS----CCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCG
T ss_pred             CCeeEEeCCCcEEEEEEeCC----CCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCc
Confidence            34567899999999999842    56789999864 111   11000      001246776653    23799999999


Q ss_pred             CCCCcceEEEeeec
Q psy12724        138 EDGYKSYQCRTKHR  151 (167)
Q Consensus       138 ~D~~G~Y~C~a~n~  151 (167)
                      +|+ |.|.|.+.|.
T Consensus        82 ~D~-G~Y~C~~~~~   94 (238)
T 1bec_A           82 SQT-SVYFCASGGG   94 (238)
T ss_dssp             GGC-EEEEEEEESC
T ss_pred             ccC-EEEEEEEecC
Confidence            999 9999999986

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=98.86  E-value=4.3e-08  Score=68.79  Aligned_cols=89  Identities=16%  Similarity=0.193  Sum_probs=58.6

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC--Cee--eEEee----eecCCceEEEcc--C---CeEEEeecCcC
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ--GEE--LFVDM----TESTDGKYLVLP--S---GELHIRDVGPE  138 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~--~~~--l~~~~----~~~~~~r~~~~~--~---g~L~I~~v~~~  138 (167)
                      +....+.+|++|.|.|.+.+.  .....+.|+|..  ...  +....    .+...+||.+..  +   ..|.|++++.+
T Consensus         8 P~~~~v~~G~~vtL~C~~s~~--~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~   85 (129)
T 3rrq_A            8 PALLVVTEGDNATFTCSFSNT--SESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRN   85 (129)
T ss_dssp             CSEEEEETTSCEEEEEECCCC--C-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSCCGG
T ss_pred             CCEEEEeCCCCEEEEeEecCC--CCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCCChh
Confidence            345678899999999999743  124678998742  111  21110    001235887752  2   26999999999


Q ss_pred             CCCcceEEEeeecC-------cceEEEeeeCC
Q psy12724        139 DGYKSYQCRTKHRL-------TGETRLSATKG  163 (167)
Q Consensus       139 D~~G~Y~C~a~n~~-------~~~~~l~~~~~  163 (167)
                      |+ |.|.|.+.|..       +..++|+++..
T Consensus        86 Ds-g~Y~C~~~~~~~~~~~~~s~~~~L~V~~~  116 (129)
T 3rrq_A           86 DS-GTYLCGAISLAPKLQIKESLRAELRVTER  116 (129)
T ss_dssp             GC-EEEEEEEEECGGGCEEEECCCEEEEEECC
T ss_pred             HC-EEEEEEEEecCCCceeeEeceEEEEEecC
Confidence            99 99999999864       34578887654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.86  E-value=7.8e-10  Score=89.11  Aligned_cols=70  Identities=20%  Similarity=0.300  Sum_probs=54.6

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCc-ceEEEeeec
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYK-SYQCRTKHR  151 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G-~Y~C~a~n~  151 (167)
                      .+..+.+|+++.|.|.+.   +.|.|.++|++++. .+...     ..+.....++.|.|.+++.+|+ | .|+|.|.|.
T Consensus       166 ~~~~v~~G~~v~L~C~~~---g~p~p~i~W~~~~~-~~~~~-----~~~~~~~~~~~L~i~~v~~~D~-G~~Y~C~a~n~  235 (347)
T 2ifg_A          166 PNASVDVGDDVLLRCQVE---GRGLEQAGWILTEL-EQSAT-----VMKSGGLPSLGLTLANVTSDLN-RKNVTCWAEND  235 (347)
T ss_dssp             CSSCCBTTCCEEEEEEEE---CSSCCCCCEEESCC-CSSEE-----ECCCCCSSEEEEEEESCCSTTT-TCCEEECCEET
T ss_pred             CceEEeCCCcEEEEEEEe---cCCCCEEEEEcCCc-eeecc-----cccceecccceEEEeeCChHHC-CCeEEEEEEcC
Confidence            455678999999999997   45889999999984 33221     1222334567899999999999 9 999999998


Q ss_pred             C
Q psy12724        152 L  152 (167)
Q Consensus       152 ~  152 (167)
                      .
T Consensus       236 ~  236 (347)
T 2ifg_A          236 V  236 (347)
T ss_dssp             T
T ss_pred             C
Confidence            6

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=98.86  E-value=7.5e-09  Score=80.82  Aligned_cols=85  Identities=18%  Similarity=0.306  Sum_probs=57.8

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCc--ceeEEEEeCC-Ceee--EEee---------eecCCceEEEcc-----CCeEEEe
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADY--VAVESWISDQ-GEEL--FVDM---------TESTDGKYLVLP-----SGELHIR  133 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p--~p~i~W~k~~-~~~l--~~~~---------~~~~~~r~~~~~-----~g~L~I~  133 (167)
                      .+..+.+|++|+|+|.+.+.   |  .+.+.|+|++ +..+  .-.+         .+...+|+.+..     +..|.|+
T Consensus        14 ~~~~v~~G~~v~L~C~~~~~---~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   90 (261)
T 2xqy_G           14 GAELVKPGASVKMSCKASGY---SFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLS   90 (261)
T ss_dssp             SEEEECTTCCEEEEEEEESS---CGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             CCEEEcCCCCEEEEEEeCCc---ccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEc
Confidence            44578899999999999743   3  5789999864 1221  1000         001246787654     2479999


Q ss_pred             ecCcCCCCcceEEEeeecC------cceEEEeee
Q psy12724        134 DVGPEDGYKSYQCRTKHRL------TGETRLSAT  161 (167)
Q Consensus       134 ~v~~~D~~G~Y~C~a~n~~------~~~~~l~~~  161 (167)
                      +++.+|+ |.|.|.+.|..      ...+.|.+.
T Consensus        91 ~v~~~Ds-G~Y~C~~~~~~~~~~~~~~~~~L~V~  123 (261)
T 2xqy_G           91 SLTSEDS-AVYYCGRLGYVYGFDYWGQGTTLTVS  123 (261)
T ss_dssp             SCCGGGC-EEEEEEEECTTSSEEEECCCEEEEEC
T ss_pred             CCCcccC-eEEEEEEecCCCcceEECCCEEEEEc
Confidence            9999999 99999999842      234566654

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=98.85  E-value=9e-09  Score=74.36  Aligned_cols=85  Identities=21%  Similarity=0.287  Sum_probs=56.9

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-e---eeEEe---eeecCCceEEEccC---CeEEEeecCcCCCCc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-E---ELFVD---MTESTDGKYLVLPS---GELHIRDVGPEDGYK  142 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~---~l~~~---~~~~~~~r~~~~~~---g~L~I~~v~~~D~~G  142 (167)
                      .+..+.+|++|+|+|.+.+.   +.+.+.|+|... .   .+...   ..+...+||.+..+   ..|.|++++.+|+ |
T Consensus        24 ~~v~v~~G~sVtL~C~~s~~---~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~v~~~Ds-G   99 (146)
T 2yc1_B           24 ATLSVSPGERATLSCRASQS---VRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGSGTDFTLTISSLEPEDF-A   99 (146)
T ss_dssp             SEEEECTTSCEEEEEEESSC---CTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-S
T ss_pred             CEEEEecCCCEEEEEEECCC---CCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEecCCCEEEEEECCCCHHHC-E
Confidence            34578899999999999743   456789998541 1   12110   00012457766432   2699999999999 9


Q ss_pred             ceEEEeeecC----cceEEEeee
Q psy12724        143 SYQCRTKHRL----TGETRLSAT  161 (167)
Q Consensus       143 ~Y~C~a~n~~----~~~~~l~~~  161 (167)
                      .|.|.+.|..    ..-++|++.
T Consensus       100 ~Y~C~~~~~~~~~fg~GT~L~V~  122 (146)
T 2yc1_B          100 IYYCQQYRYSPRTFGQGTKVEIK  122 (146)
T ss_dssp             EEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEEEEecCCCCeECCCEEEEEe
Confidence            9999998753    344566654

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.85  E-value=1.1e-08  Score=78.07  Aligned_cols=71  Identities=11%  Similarity=0.149  Sum_probs=48.3

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCccee-----EEEEeCCCee-----eEEeeeecCCceEEEc-------------cCCeE
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAV-----ESWISDQGEE-----LFVDMTESTDGKYLVL-------------PSGEL  130 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~-----i~W~k~~~~~-----l~~~~~~~~~~r~~~~-------------~~g~L  130 (167)
                      +..+.+|+++.|+|.+.+   .|.+.     ++|+|++...     +...    .+++....             .+..|
T Consensus        12 ~~~v~~G~~v~L~C~~~g---~p~~~~~~~~v~W~k~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~sL   84 (248)
T 3pv7_A           12 TQITPLNDNVTIFCNIFY---SQPLNITSMGITWFWKSLTFDKEVKVFEF----FGDHQEAFRPGAIVSPWRLKSGDASL   84 (248)
T ss_dssp             EEEEETTSCEEECCEEEE---SSCCCTTSCEEEEEEECSSCCCEEEEEEE----ESSCEEESSTTCBCCHHHHTTTBCCE
T ss_pred             CeEEeCCCCEEEeeEEec---CCCcCCCceEEEEEEEcCCCCcceEEEEe----cCCcccccCCceEEEeccCCCCcEEE
Confidence            457889999999999963   35554     9999974211     1110    01111111             12359


Q ss_pred             EEeecCcCCCCcceEEEeeecC
Q psy12724        131 HIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       131 ~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .|.+++.+|+ |.|+|.+.|..
T Consensus        85 ~I~~v~~~D~-G~Y~C~~~~~~  105 (248)
T 3pv7_A           85 RLPGIQLEEA-GEYRCEVVVTP  105 (248)
T ss_dssp             EESSCCGGGC-EEEEEEEEETT
T ss_pred             EeCCCCHHHC-eEEEEEEEeCC
Confidence            9999999999 99999999876

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=98.85  E-value=8.9e-09  Score=72.56  Aligned_cols=76  Identities=21%  Similarity=0.333  Sum_probs=52.3

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeEEeeeecCCceEEEcc-----CCeEEEeecCcCCCCcceEE
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELFVDMTESTDGKYLVLP-----SGELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~~~~~~~~~~r~~~~~-----~g~L~I~~v~~~D~~G~Y~C  146 (167)
                      .+..+.+|++++|+|.+.+. ..+.+.+.|+|.. +.......  ...+||.+..     +..|.|++++.+|+ |.|.|
T Consensus         8 ~~v~v~~G~svtL~C~~s~~-~~~~~~v~Wyrq~~g~~~~~li--~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds-G~Y~C   83 (126)
T 3moq_A            8 RTATKETGESLTINCVLRDA-SFELKDTGWYRTKLGSTNEQSI--SIGGRYVETVNKGSKSFSLRISDLRVEDS-GTYKC   83 (126)
T ss_dssp             SEEEEETTCCEEEEEEEESC-SSCCCEEEEEEEETTCCCCEEC--CCBTTEEEEEETTTTEEEEEECSCCGGGC-EEEEE
T ss_pred             ceEEEeCCCCEEEEEEeecC-ccCCceEEEEEeCCCCCceEEE--EeCCcEEEEEeCCCCEEEEEECcCChHhC-EEEEE
Confidence            44678899999999998642 1145678999842 11110001  1356776532     23699999999999 99999


Q ss_pred             EeeecC
Q psy12724        147 RTKHRL  152 (167)
Q Consensus       147 ~a~n~~  152 (167)
                      .+.|..
T Consensus        84 ~~~~~~   89 (126)
T 3moq_A           84 QAFYVF   89 (126)
T ss_dssp             EEEEEE
T ss_pred             EEEEcC
Confidence            999865

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.84  E-value=1.1e-08  Score=74.32  Aligned_cols=71  Identities=14%  Similarity=0.190  Sum_probs=51.3

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcce--eEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVA--VESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p--~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..+.+|+++.|.|.+.+.   |.|  .++|+|++ ..+..      ..+.  ..+..|.|.  +.+|+ |.|+|.|.|..
T Consensus         8 ~~v~~G~~v~l~C~~~~~---~~p~~~~~W~k~~-~~l~~------~~~~--~~~~~l~i~--~~~d~-G~Y~C~~~n~~   72 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDS---ATEVTGHRWLKGG-VVLKE------DALP--GQKTEFKVD--SDDQW-GEYSCVFLPEP   72 (184)
T ss_dssp             EEEEETTEEEEEEEEESC---SSCCCEEEEESSS-EEEEC------TTCC--CSEEEEEEC--GGGCC-EEEEEEEESTT
T ss_pred             EEEecCCCEEEEEECCCC---CCCceEEEEEeCC-EEeec------cccc--CCcEEEEEe--chhhC-eEEEEEEECCc
Confidence            567899999999998754   555  89999987 55532      1111  113356676  69999 99999999976


Q ss_pred             cceEEEee
Q psy12724        153 TGETRLSA  160 (167)
Q Consensus       153 ~~~~~l~~  160 (167)
                      ...+.|.+
T Consensus        73 ~~~~~l~V   80 (184)
T 3b5h_A           73 MGTANIQL   80 (184)
T ss_dssp             SCEEEEEE
T ss_pred             CcEEEEEE
Confidence            66666655

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=98.83  E-value=1.9e-08  Score=71.60  Aligned_cols=83  Identities=19%  Similarity=0.189  Sum_probs=57.2

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeC-C-CeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcceEEE
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISD-Q-GEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~-~-~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~C~  147 (167)
                      ....+.+|++|.|.|.+.+.    .+.+.|+|. . +..+....  ...+||....++   .|.|++++.+|+ |.|.|.
T Consensus        26 ~~~~v~~G~svtL~C~~s~~----~~~v~Wyrq~~~g~~~~~l~--~~~~rf~~~~~~~~~~L~I~~~~~~Ds-g~Y~C~   98 (134)
T 3kg5_A           26 RFIARKRGFTVKMHCYMNSA----SGNVSWLWKQEMDENPQQLK--LEKGRMEESQNESLATLTIQGIRFEDN-GIYFCQ   98 (134)
T ss_dssp             SEEEEETTCCEEEEEECCCT----TCCCEEEEESSSSSCCEECC--CCTTTEEEEECSSEEEEEECSCCTTTC-EEEEEE
T ss_pred             CEEEEeCCCCEEEEEEECCC----CceEEEEEECCCCCCcEEEE--EECCeEEEEccCCEEEEEECCCCcCcC-EEEEEE
Confidence            34678899999999999742    356899987 2 22221100  124677665433   699999999999 999999


Q ss_pred             eeec------CcceEEEeeeC
Q psy12724        148 TKHR------LTGETRLSATK  162 (167)
Q Consensus       148 a~n~------~~~~~~l~~~~  162 (167)
                      +.+.      +...++|.+.+
T Consensus        99 ~~~~~~~~~~fg~GT~L~V~~  119 (134)
T 3kg5_A           99 QKCNNTSEVYQGCGTELRVMG  119 (134)
T ss_dssp             EECTTTCCEEECCCEEEEEEC
T ss_pred             EEcCCCCceEECCCEEEEEec
Confidence            9876      24456666643

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.82  E-value=6.5e-09  Score=80.70  Aligned_cols=86  Identities=21%  Similarity=0.303  Sum_probs=56.8

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCc-----ceeEEEEeCC-Cee---eEEe---eeecCCceEEEccC---CeEEEeecC
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADY-----VAVESWISDQ-GEE---LFVD---MTESTDGKYLVLPS---GELHIRDVG  136 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p-----~p~i~W~k~~-~~~---l~~~---~~~~~~~r~~~~~~---g~L~I~~v~  136 (167)
                      +.+..+.+|++|+|.|.+.+.   |     .+.+.|+|++ +..   +...   ..+...+|+.+..+   ..|.|.+++
T Consensus        22 p~~~~v~~G~~v~L~C~~~~~---~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   98 (268)
T 1x9q_A           22 PLSLPVSLGDQASISCRSSQS---LVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVE   98 (268)
T ss_dssp             CSEECCCTTCCEEEEEEESSC---CBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC
T ss_pred             CCeEEecCCCCEEEEeEecCC---cccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCC
Confidence            345677899999999999753   4     4789999863 111   1100   00012467776532   379999999


Q ss_pred             cCCCCcceEEEeeecC----cceEEEeee
Q psy12724        137 PEDGYKSYQCRTKHRL----TGETRLSAT  161 (167)
Q Consensus       137 ~~D~~G~Y~C~a~n~~----~~~~~l~~~  161 (167)
                      .+|+ |.|.|.+.|..    +..+.|.+.
T Consensus        99 ~~Ds-G~Y~C~~~~~~~~~~~~~~~L~V~  126 (268)
T 1x9q_A           99 AEDL-GVYFCSQSTHVPWTFGGGTKLEIK  126 (268)
T ss_dssp             GGGC-EEEEEEECSSSSCEECCCEEEC--
T ss_pred             hhHC-EEEEEEEecCCCceEcCCEEEEEc
Confidence            9999 99999999873    334555553

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.82  E-value=5.4e-09  Score=81.80  Aligned_cols=68  Identities=10%  Similarity=0.026  Sum_probs=48.6

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEE-EccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYL-VLPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~-~~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      ..+.+|++++|.|.+.+    +.+.+.|+||+. .+.+..   ...++. ...++.|.|.+++.+|+ |.|+|.|.|.
T Consensus        16 ~~V~~G~~VtL~C~~~~----~~~~~~W~k~g~-~~~~~~---~~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~a~~~   84 (257)
T 1b6u_A           16 PLVKSEETVILQCWSDV----RFQHFLLHREGK-FKDTLH---LIGEHHDGVSKANFSIGPMMQDLA-GTYRCYGSVT   84 (257)
T ss_dssp             SEEESSCCEEEEEEESS----CCSEEEEEEEST-TCEEEE---EECBCCTTCEEEEEEECSCCTTTC-EEEEEEEECS
T ss_pred             CEecCCCCEEEEEecCC----CCcEEEEEECCC-CCCcce---eeeeccCCCceEEEEeecCCcccC-EEEEEeEecc
Confidence            56789999999999963    456899999973 443211   001110 12356899999999999 9999999863

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.82  E-value=3.8e-09  Score=82.89  Aligned_cols=78  Identities=18%  Similarity=0.257  Sum_probs=53.6

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEe--------eeecCCceEEEccCC-----eEEEee
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVD--------MTESTDGKYLVLPSG-----ELHIRD  134 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~--------~~~~~~~r~~~~~~g-----~L~I~~  134 (167)
                      +.+..+.+|++|+|+|.+.+. ..+.+.+.|+|.. +..   +...        ..+...+|+.+..++     .|.|++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEV-TFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRS   85 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCS-CCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECS
T ss_pred             CCCEEECCCCcEEEEEEeecc-CCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence            455678899999999999753 2256789999743 111   1110        000123577766332     699999


Q ss_pred             cCcCCCCcceEEEeeec
Q psy12724        135 VGPEDGYKSYQCRTKHR  151 (167)
Q Consensus       135 v~~~D~~G~Y~C~a~n~  151 (167)
                      ++.+|+ |.|.|.+.|.
T Consensus        86 v~~~Ds-G~Y~C~~~~~  101 (280)
T 3fku_X           86 LRSEDT-AVYYCARSPS  101 (280)
T ss_dssp             CCSTTC-EECCEEECSS
T ss_pred             CChhhC-EEEEEEEecC
Confidence            999999 9999999997

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.81  E-value=6.6e-10  Score=83.95  Aligned_cols=77  Identities=16%  Similarity=0.241  Sum_probs=41.0

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-eeeEE-ee-----eecCCceEEEccCC---eEEEeecCcCCCC
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-EELFV-DM-----TESTDGKYLVLPSG---ELHIRDVGPEDGY  141 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~~l~~-~~-----~~~~~~r~~~~~~g---~L~I~~v~~~D~~  141 (167)
                      +.+..+.+|++|.|+|.+.+   .|.+.++|+|++. ..+.. .+     .....+|+.+..++   .|.|.+++.+|+ 
T Consensus        30 p~~~~v~~G~~v~L~C~~~~---~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~-  105 (233)
T 3bqu_C           30 PASLSMSIGEKVTIRCITST---DIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDV-  105 (233)
T ss_dssp             CSBC-------CCEEEEEEE---EESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCC-
T ss_pred             CCeEEEecCCCEEEEEecCC---cCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHC-
Confidence            44567889999999999874   3667899998641 11100 00     00113455444322   799999999999 


Q ss_pred             cceEEEeeecC
Q psy12724        142 KSYQCRTKHRL  152 (167)
Q Consensus       142 G~Y~C~a~n~~  152 (167)
                      |.|.|.|.|..
T Consensus       106 G~Y~C~~~~~~  116 (233)
T 3bqu_C          106 ADYYCLQSDNL  116 (233)
T ss_dssp             SEEEEEECSSS
T ss_pred             EEEEEEEecCC
Confidence            99999999864

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=98.81  E-value=2.7e-08  Score=68.03  Aligned_cols=76  Identities=21%  Similarity=0.321  Sum_probs=51.6

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC----e---eeEEeee--------ecCCceEEEcc--C---CeEEE
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG----E---ELFVDMT--------ESTDGKYLVLP--S---GELHI  132 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~----~---~l~~~~~--------~~~~~r~~~~~--~---g~L~I  132 (167)
                      ....+.+|++|+|+|.+.+.  .+.+.+.|+|...    .   .+.....        ....+|+.+..  +   ..|.|
T Consensus         6 ~~~~~~~G~~vtL~C~~~~~--~~~~~v~W~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (115)
T 2atp_B            6 SSLLVQTNHTAKMSCEVKSI--SKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSI   83 (115)
T ss_dssp             SEEEECTTSCEEEEEECCSS--CCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEE
T ss_pred             CCEEEcCCCcEEEEEEecCC--CCcccEEEEEeCCCCCCCccEEEEEEeCCCCeEecCCCccCcEEEEEeCCCCEEEEEE
Confidence            34577899999999999743  1356789998541    1   1211000        01146777654  2   27999


Q ss_pred             eecCcCCCCcceEEEeeec
Q psy12724        133 RDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus       133 ~~v~~~D~~G~Y~C~a~n~  151 (167)
                      ++++.+|+ |.|.|.+.+.
T Consensus        84 ~~~~~~Ds-G~Y~C~~~~~  101 (115)
T 2atp_B           84 MNVKPEDS-DFYFCATVGS  101 (115)
T ss_dssp             CSCCGGGC-EEEEEEEECS
T ss_pred             CCCCHHHC-EEEEEeEccC
Confidence            99999999 9999999864

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=98.80  E-value=1.3e-08  Score=78.55  Aligned_cols=133  Identities=15%  Similarity=0.277  Sum_probs=79.5

Q ss_pred             eeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC-Cc---eeee--c-----------CCce----------
Q psy12724         10 SQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD-GG---QYQI--D-----------NQDF----------   62 (167)
Q Consensus        10 ~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~-~~---~~~~--~-----------~~~~----------   62 (167)
                      .+.....+..+.+.+|+++.|.|.+.+.... ...+.|+|.+ +.   .+..  .           ..|.          
T Consensus        23 ~~~~v~~~~~~~v~~G~~v~L~C~~~~~~~~-~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~  101 (256)
T 3sob_H           23 AEVQLVESGGGLVQPGGSLRLSCAASGFTFT-NSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNT  101 (256)
T ss_dssp             -CCEEEEECCCEECTTCCEEEEEEEESSCGG-GSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTE
T ss_pred             cceEEEecCcEEEcCCCCEEEEEEeeccccC-CCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCE
Confidence            3334455667789999999999999754322 2469998742 11   1100  0           0110          


Q ss_pred             --E--------EEeeeEEEecC---------------------eE-------------------EEeCCcEEEEeeeCCc
Q psy12724         63 --V--------VSQSYTVNIMD---------------------EH-------------------VLKGNSAVLKCHIPSF   92 (167)
Q Consensus        63 --v--------~~g~y~c~~~~---------------------~~-------------------v~~G~~a~l~C~~~~~   92 (167)
                        +        .+|.|.|.+.+                     ..                   +.+|+.+.|.|.+.+.
T Consensus       102 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~  181 (256)
T 3sob_H          102 AYLQMNSLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDY  181 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEE
T ss_pred             EEEEECCCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEE
Confidence              1        17999998742                     00                   1368899999999764


Q ss_pred             cCCc-ceeEEEEeCCCeeeEE---ee--eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         93 VADY-VAVESWISDQGEELFV---DM--TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        93 ~~~p-~p~i~W~k~~~~~l~~---~~--~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .  | .+.++|  ++ ..+..   ..  ....++.|.+.  ..|.|.....+|  |.|+|.+.|..
T Consensus       182 ~--p~~~~v~W--~~-~~~~~~~~~~~~~~~~~g~~~~~--s~L~i~~~~~~d--~~ytC~v~~~~  238 (256)
T 3sob_H          182 F--PEPVTVSW--NS-GALTSGVHTFPAVLQSSGLYSLS--SVVTVPSSSLGT--QTYICNVNHKP  238 (256)
T ss_dssp             B--SSCCEEEE--GG-GTBCTTEEECCCEECTTSCEEEE--EEEEEEGGGTTT--CCCEEEEEEGG
T ss_pred             E--CCCeEEEE--CC-cccCCCeEeCCceeCCCCCEEEE--EEEEECHHHcCC--ceEEEEEEeCC
Confidence            2  4 457899  43 22210   00  01233455442  369999887777  99999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	167
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.68
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.66
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.64
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.63
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.63
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.63
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.63
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.62
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.62
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.61
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.6
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.58
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.58
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.57
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.57
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.57
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.56
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.55
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.55
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.55
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.55
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.54
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.53
d2avga1	110	Cardiac myosin binding protein C, different domain	99.53
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.53
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.53
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.53
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.52
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.52
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.52
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.51
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.5
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.5
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.5
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.48
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.47
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.47
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.44
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.44
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.44
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.44
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.44
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.43
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.42
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.42
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.41
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.4
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.39
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.35
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.35
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.32
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.3
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.29
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.29
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.28
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.28
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.27
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.25
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.23
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.22
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.16
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	99.14
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.93
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.81
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.81
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.78
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.74
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	98.73
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.71
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.68
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.67
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.66
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.65
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	98.64
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.63
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.61
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.6
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.6
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.59
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.58
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.57
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	98.57
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.56
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.55
d2avga1	110	Cardiac myosin binding protein C, different domain	98.55
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.54
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.53
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.53
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.52
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.51
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.51
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.51
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.51
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.5
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.49
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.49
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.49
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.48
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.47
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.45
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.45
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.45
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.45
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.44
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	98.43
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.43
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.42
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.41
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.41
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.4
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.4
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.4
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	98.4
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	98.4
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.4
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.39
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.39
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.39
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.39
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.39
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.39
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.38
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.38
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.38
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.38
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.38
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.36
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.36
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.35
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.35
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.35
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.35
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.35
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.34
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.34
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.33
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.33
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.32
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.31
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.3
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.29
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.29
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.27
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.27
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.26
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.25
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.25
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.23
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.23
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.23
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.22
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.22
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.22
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.2
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.2
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.19
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.19
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.18
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.18
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.16
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.16
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.16
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.15
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.14
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.14
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.13
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.12
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.12
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.12
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.12
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.1
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.09
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.08
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.07
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.06
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.05
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.05
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.05
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.03
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.03
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.01
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.0
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.0
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.0
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	98.0
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.97
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.95
d1pd6a_	94	Cardiac myosin binding protein C, different domain	97.95
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	97.94
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.93
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.92
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.91
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	97.89
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.89
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	97.88
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	97.87
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.86
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	97.82
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.79
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	97.74
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.7
d1gxea_	130	Cardiac myosin binding protein C, different domain	97.69
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.69
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	97.69
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.69
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.67
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.67
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.66
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.64
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.62
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.6
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	97.6
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	97.57
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.56
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.53
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.52
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.52
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.52
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.51
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.51
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.5
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.5
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.44
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.44
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.44
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.44
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.43
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.42
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.4
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.39
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.36
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.36
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.35
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.35
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.35
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.35
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.34
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.33
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.33
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.3
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.29
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.29
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.28
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.28
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.26
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.26
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.25
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.24
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.24
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.23
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.22
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.22
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.2
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.19
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.19
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.19
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.17
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.16
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.13
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.13
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.13
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.13
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.13
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.12
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.12
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.11
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.1
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.1
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.1
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.09
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.06
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.06
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.05
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	97.04
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.02
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	96.99
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	96.97
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.97
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	96.96
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.96
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	96.95
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	96.95
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.92
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	96.9
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	96.9
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	96.89
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	96.87
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.85
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	96.84
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	96.83
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	96.77
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	96.76
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	96.75
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	96.74
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	96.73
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	96.72
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	96.7
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	96.7
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.66
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	96.65
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	96.64
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	96.63
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	96.59
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	96.53
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	96.5
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	96.5
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	96.5
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	96.49
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	96.48
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	96.46
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	96.44
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	96.42
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	96.41
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	96.39
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	96.36
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	96.31
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	96.23
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	96.21
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	96.13
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	96.11
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	96.1
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	96.09
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	96.02
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	95.93
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	95.8
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	95.78
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	95.75
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	95.74
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	95.48
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	95.44
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	95.36
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	95.11
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	94.84
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	94.66
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	94.65
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	94.53
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	94.32
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	94.24
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	94.23
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	94.05
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	94.03
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	93.91
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	93.88
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	93.83
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	93.81
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	93.8
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	93.63
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	93.59
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	93.55
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	93.53
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	93.45
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	93.3
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	93.28
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	93.26
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	93.1
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	93.09
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	93.06
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	93.0
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	92.88
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	92.84
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	92.83
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	92.82
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	92.76
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	92.68
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	92.66
d8faba1	103	Immunoglobulin light chain lambda variable domain,	92.63
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	92.61
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	92.5
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	92.47
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	92.4
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	92.28
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	92.23
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	92.2
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	92.19
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	92.04
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	92.04
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	92.0
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	91.88
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	91.83
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	91.83
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	91.71
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	91.63
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	91.57
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	91.48
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	91.22
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	91.2
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	91.12
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	91.04
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	90.83
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	90.76
d1igyb3	116	Immunoglobulin heavy chain gamma constant domain 2	90.75
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	90.66
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	90.59
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	90.58
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	90.57
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	90.52
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	90.49
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	90.39
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	90.35
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	90.16
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	90.11
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	89.84
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	89.71
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	89.68
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	89.54
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	89.42
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	89.29
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	89.26
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	89.25
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	89.23
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	88.93
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	88.79
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	88.79
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	88.48
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	88.47
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	88.35
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	88.22
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	88.22
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	88.08
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	88.01
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	87.99
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	87.84
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	87.74
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	87.68
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	87.53
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	87.23
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	86.9
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	86.8
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	86.41
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	85.15
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	84.83
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	84.32
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	84.04
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	83.6
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	82.8
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	82.76
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	82.68
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	82.16
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	81.99
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	81.83
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	81.57
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	81.38
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	81.16
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	80.36
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	80.34
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	80.1
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	80.1

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.68  E-value=8.2e-17  Score=105.86  Aligned_cols=75  Identities=21%  Similarity=0.356  Sum_probs=63.0

Q ss_pred             eeeEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceE
Q psy12724         66 QSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        66 g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~  145 (167)
                      +.|.-.+.|..+..|+++.|.|.+.   |.|.|.++|+||+ ..+.      .+.++.+ .++.|.|.+++.+|+ |.|+
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~---g~P~p~v~W~k~g-~~i~------~~~~~~~-~~~~L~i~~v~~~D~-G~Y~   69 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVAS---GKPRPAVRWLRDG-QPLA------SQNRIEV-SGGELRFSKLVLEDS-GMYQ   69 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEE---EESCCEEEEEETT-EECC------CCSSEEE-ETTEEEESSCCGGGC-EEEE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEE---EEcCCEEEEEEee-cccc------ccceeee-eeeeEEEEeecccCC-EEEE
Confidence            3456667888999999999999997   4599999999997 5663      3456655 578999999999999 9999


Q ss_pred             EEeeecC
Q psy12724        146 CRTKHRL  152 (167)
Q Consensus       146 C~a~n~~  152 (167)
                      |.|.|..
T Consensus        70 C~a~N~~   76 (89)
T d1cs6a4          70 CVAENKH   76 (89)
T ss_dssp             EEEEETT
T ss_pred             EEEEeCC
Confidence            9999987

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=9e-17  Score=106.15  Aligned_cols=80  Identities=20%  Similarity=0.450  Sum_probs=66.1

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEE
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~  147 (167)
                      |.-.+.++.+.+|+++.|.|.+.   |.|.|.++|+|++ ..+.+    ....++....++.|.|.+++.+|+ |.|+|.
T Consensus         4 F~~~P~~~~v~~G~~~~l~C~v~---g~p~p~v~W~~~~-~~i~~----~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~   74 (92)
T d1epfa2           4 FKNAPTPQEFKEGEDAVIVCDVV---SSLPPTIIWKHKG-RDVIL----KKDVRFIVLSNNYLQIRGIKKTDE-GTYRCE   74 (92)
T ss_dssp             EEECCSSEECCTTSCEEECCEEE---CSSCCEEEEEETT-EEGGG----GCCTTEEECTTSCEEETTCCGGGC-EEEEEE
T ss_pred             EEEcCCCEEEeCCCcEEEEEEEe---ecCCCeEEEEEcC-ccccc----ccceeeeeeeeeeEEECCCCHHhC-EEEEEE
Confidence            55567788999999999999997   4599999999998 45532    234567778888999999999999 999999


Q ss_pred             eeecCcceE
Q psy12724        148 TKHRLTGET  156 (167)
Q Consensus       148 a~n~~~~~~  156 (167)
                      |.|...+++
T Consensus        75 a~n~~~~~~   83 (92)
T d1epfa2          75 GRILARGEI   83 (92)
T ss_dssp             EEEGGGTEE
T ss_pred             EEECcCCEE
Confidence            999875543

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.64  E-value=1.7e-16  Score=105.58  Aligned_cols=75  Identities=29%  Similarity=0.424  Sum_probs=61.6

Q ss_pred             eeEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcc
Q psy12724         67 SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKS  143 (167)
Q Consensus        67 ~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~  143 (167)
                      .|.-.+.++.+.+|+++.|.|.+.   |.|.|.++|+||+ ..|.      .+.++.+..++   .|.|.+++.+|+ |.
T Consensus         3 ~f~~~p~~~~v~~G~~~~l~C~~~---g~P~p~v~W~~~~-~~l~------~~~~~~~~~~~~~~~L~I~~~~~~D~-G~   71 (97)
T d1koaa1           3 RFIVKPYGTEVGEGQSANFYCRVI---ASSPPVVTWHKDD-RELK------QSVKYMKRYNGNDYGLTINRVKGDDK-GE   71 (97)
T ss_dssp             EEEECCCCCEEETTSCEEEEEEEE---CSSCCEEEEEETT-EECC------SBTTBBCCCSTTEEEEEESCCCSGGG-SC
T ss_pred             EEEEeCCCEEEeCCCcEEEEEEEE---EcCCCEEEEEEee-eccc------eeeEEEEEecCCeeEEEeCCCceecC-EE
Confidence            466667888999999999999998   4599999999997 5653      34556554433   599999999999 99


Q ss_pred             eEEEeeecC
Q psy12724        144 YQCRTKHRL  152 (167)
Q Consensus       144 Y~C~a~n~~  152 (167)
                      |+|.|.|..
T Consensus        72 Y~C~a~N~~   80 (97)
T d1koaa1          72 YTVRAKNSY   80 (97)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEECC
Confidence            999999987

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.63  E-value=4.1e-16  Score=102.35  Aligned_cols=73  Identities=21%  Similarity=0.337  Sum_probs=58.2

Q ss_pred             eeEEEecCe-EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceE
Q psy12724         67 SYTVNIMDE-HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        67 ~y~c~~~~~-~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~  145 (167)
                      .|.-.+.+. .+.+|+++.|.|.+.   |.|.|.++|+||+ ..+.       .+|+.+. ++.|.|.+++.+|+ |.|+
T Consensus         4 ~f~~~p~~~~~v~~G~~~~l~C~~~---g~P~p~v~W~~~~-~~i~-------~~~~~~~-~~~L~i~~v~~~d~-G~Y~   70 (89)
T d1biha4           4 KYEQKPEKVIVVKQGQDVTIPCKVT---GLPAPNVVWSHNA-KPLS-------GGRATVT-DSGLVIKGVKNGDK-GYYG   70 (89)
T ss_dssp             EEEECCCSEEEECTTSCEEEECEEE---EESCCCCEEEETT-EECC-------SSSEEEE-TTEEEESSCCSTTC-EEEE
T ss_pred             eEEECCCCCEEEeCCCeEEEEEEEE---EeCCCEEEEEeCC-ccCc-------cccEEEe-eeeEEECCCChhhC-EEEE
Confidence            344444443 567899999999997   4599999999997 5552       4567664 56799999999999 9999


Q ss_pred             EEeeecC
Q psy12724        146 CRTKHRL  152 (167)
Q Consensus       146 C~a~n~~  152 (167)
                      |.|.|..
T Consensus        71 C~a~N~~   77 (89)
T d1biha4          71 CRATNEH   77 (89)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9999987

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.63  E-value=3.3e-16  Score=103.06  Aligned_cols=67  Identities=24%  Similarity=0.355  Sum_probs=54.8

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      +.+..+.+|+++.|.|.+.   |+|.|.++|+|+++ ...        . .....++.|.|.+++.+|+ |.|+|.|.|.
T Consensus        12 p~~~~~~~G~~v~l~C~~~---g~P~p~i~W~k~~~-~~~--------~-~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~   77 (91)
T d1cs6a3          12 PADTYALTGQMVTLECFAF---GNPVPQIKWRKLDG-SQT--------S-KWLSSEPLLHIQNVDFEDE-GTYECEAENI   77 (91)
T ss_dssp             CSEEEEETTCCEEEECEEE---EESCCEEEEEECCS-CCS--------C-CCSBSSSEEEECSCCGGGC-EEEEEEEEET
T ss_pred             CCcEEEecCCcEEEEEEEE---EccCCEEEEEeccc-ccc--------e-EeeeeeeEEEeCCCCccCC-EEEEEEEEEC
Confidence            3567889999999999998   45999999999874 221        1 1223577999999999999 9999999999


Q ss_pred             C
Q psy12724        152 L  152 (167)
Q Consensus       152 ~  152 (167)
                      .
T Consensus        78 ~   78 (91)
T d1cs6a3          78 K   78 (91)
T ss_dssp             T
T ss_pred             C
Confidence            7

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.63  E-value=8.5e-16  Score=102.24  Aligned_cols=86  Identities=20%  Similarity=0.216  Sum_probs=65.5

Q ss_pred             eeeEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc-cCC--eEEEeecCcCCCCc
Q psy12724         66 QSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL-PSG--ELHIRDVGPEDGYK  142 (167)
Q Consensus        66 g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~-~~g--~L~I~~v~~~D~~G  142 (167)
                      +.|.-...+..+.+|+++.|.|.+.   |+|.|.++|+||+ ..+.+     ....+.+. .+|  .|.|.+++.+|+ |
T Consensus         5 P~f~~~~~~~~v~~g~~v~l~c~v~---g~P~p~v~W~k~~-~~i~~-----~~~~~~~~~~~~~~~L~I~~~~~~D~-G   74 (98)
T d1g1ca_           5 PKIFERIQSQTVGQGSDAHFRVRVV---GKPDPECEWYKNG-VKIER-----SDRIYWYWPEDNVCELVIRDVTGEDS-A   74 (98)
T ss_dssp             EEEEECCCCEEEETTSCEEEEEEEE---EESCCEEEEEETT-EECCC-----CSSEEEEEEETTEEEEEECSCCGGGC-E
T ss_pred             CeEecCCCcEEEcCCCcEEEEEEEE---EecCCeEEEEeCc-eEEee-----eeeeEEEeccceEEEEEeccCccccC-E
Confidence            4556566788999999999999997   4599999999997 56642     22223322 344  699999999999 9


Q ss_pred             ceEEEeeecC---cceEEEeee
Q psy12724        143 SYQCRTKHRL---TGETRLSAT  161 (167)
Q Consensus       143 ~Y~C~a~n~~---~~~~~l~~~  161 (167)
                      .|+|.|.|..   +..+.|.+.
T Consensus        75 ~Y~c~a~N~~G~~~~~~~L~V~   96 (98)
T d1g1ca_          75 SIMVKAINIAGETSSHAFLLVQ   96 (98)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEECCcEEEEEEEEEEE
Confidence            9999999987   345566654

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.9e-16  Score=105.22  Aligned_cols=77  Identities=21%  Similarity=0.235  Sum_probs=61.0

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT  153 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~  153 (167)
                      +..+.+|+++.|.|.+.+.  .|.+.++|+|++ ..+.      ...++....++.|.|.+++.+|+ |.|+|.|.|...
T Consensus        15 ~v~~~~G~~v~L~C~~~g~--~~~~~i~W~k~~-~~l~------~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~n~~~   84 (93)
T d1n26a1          15 VLTSLPGDSVTLTCPGVEP--EDNATVHWVLRK-PAAG------SHPSRWAGMGRRLLLRSVQLHDS-GNYSCYRAGRPA   84 (93)
T ss_dssp             EEEECTTCCEEEECTTSCT--TCCSEEEEEEEC-SSSS------CCCEEEEEESSEEEECSCCGGGC-EEEEEESSSSCS
T ss_pred             CEEEeCCCcEEEEEEeecC--CCCceEEEEEcc-cccc------ceeeEEecCCCEEEECCCChhcC-EEEEEEECCccc
Confidence            3567789999999999752  234589999997 4553      24455556688999999999999 999999999987


Q ss_pred             ceEEEee
Q psy12724        154 GETRLSA  160 (167)
Q Consensus       154 ~~~~l~~  160 (167)
                      +.++|.+
T Consensus        85 ~t~~l~V   91 (93)
T d1n26a1          85 GTVHLLV   91 (93)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEEE
Confidence            7777765

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.62  E-value=3.7e-16  Score=105.60  Aligned_cols=72  Identities=15%  Similarity=0.347  Sum_probs=57.0

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ...+.+|+++.|.|.+..  +.|.|.++|+||+. .+...   ....++....+|.|.|.+++.+|+ |.|+|.|.|..
T Consensus        13 ~v~v~eG~~~~l~C~~~~--~~p~~~v~W~k~g~-~~~~~---~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~   84 (105)
T d1cs6a2          13 PVKITEGWGVMFTCSPPP--HYPALSYRWLLNEF-PNFIP---ADGRRFVSQTTGNLYIAKTEASDL-GNYSCFATSHI   84 (105)
T ss_dssp             CEEEETTSCEEECCCCCS--EESCCEEEEEESST-TCBCC---CCSSEEECTTTCCEEESSCCGGGC-EEEEEEEEEEE
T ss_pred             CEEEeCCCeEEEEEEccC--CCCCCEEEEEEeec-ccccc---ccceeeeecCCCEEeecccccccC-cEEEEEEEECC
Confidence            357899999999999843  45889999999974 43221   123455556788999999999999 99999999987

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.62  E-value=1.4e-15  Score=101.84  Aligned_cols=76  Identities=22%  Similarity=0.464  Sum_probs=61.4

Q ss_pred             eeeEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc--cCC--eEEEeecCcCCCC
Q psy12724         66 QSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL--PSG--ELHIRDVGPEDGY  141 (167)
Q Consensus        66 g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~--~~g--~L~I~~v~~~D~~  141 (167)
                      +.|.-.+.+..+.+|+++.|.|.+.   |.|.|.++|+||+ ..+.      .+.++.+.  .++  .|.|.+++.+|+ 
T Consensus         9 P~f~~~~~~~~v~~G~~~~l~C~~~---g~P~p~v~W~k~~-~~i~------~~~~~~~~~~~~~~~~L~I~~~~~~D~-   77 (102)
T d1fhga_           9 PYFTKTILDMEVVEGSAARFDCKVE---GYPDPEVMWFKDD-NPVK------ESRHFQIDYDEEGNCSLTISEVCGDDD-   77 (102)
T ss_dssp             EEEEECCCCEEEETTSCEEEEEEEE---EESCCEEEEEETT-EECC------CSSSEEEEECTTCEEEEEESSCCGGGC-
T ss_pred             CeEEcCCCcEEEecCCcEEEEEEEE---eccCCeEEEEeee-cccc------ceeeEeEEEecCceeeeEecCCCHHhC-
Confidence            4466667788999999999999998   4599999999998 5663      24455443  333  699999999999 


Q ss_pred             cceEEEeeecC
Q psy12724        142 KSYQCRTKHRL  152 (167)
Q Consensus       142 G~Y~C~a~n~~  152 (167)
                      |.|+|.|.|..
T Consensus        78 G~Y~C~a~N~~   88 (102)
T d1fhga_          78 AKYTCKAVNSL   88 (102)
T ss_dssp             EEEEEEEEETT
T ss_pred             EEEEEEEEECC
Confidence            99999999987

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.8e-16  Score=102.90  Aligned_cols=71  Identities=25%  Similarity=0.378  Sum_probs=59.1

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT  153 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~  153 (167)
                      ++.+.+|+++.|+|.+.+    |.|.+.|.+++ ..+..     ...++.+..+|.|.|++++.+|+ |.|+|.|.|...
T Consensus         6 ~~~~~~G~~~~l~C~~~g----~~~~v~W~~~g-~~l~~-----~~~~~~~~~~~~L~I~~v~~~Ds-G~Y~C~A~n~~g   74 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS----NLARVFWKFQN-GVLKA-----ESPKYGLMGRKNLLIFNLSEGDS-GVYQCLSEERVK   74 (92)
T ss_dssp             EEEEETTSCEEECCCCSC----TTCEEEEEESS-SBCCC-----CSSSBCCTTTTCEEECSCCGGGC-EEEEEEEEEECS
T ss_pred             heeEeCCCEEEEEEEeec----cCCceeeecCc-cccee-----eeeeeecceeeEEEECCCCHHHC-cEEEEEEEEcCC
Confidence            467889999999999973    56788999987 45532     35678888899999999999999 999999999874


Q ss_pred             ce
Q psy12724        154 GE  155 (167)
Q Consensus       154 ~~  155 (167)
                      .+
T Consensus        75 ~~   76 (92)
T d1olza1          75 NK   76 (92)
T ss_dssp             SS
T ss_pred             CE
Confidence            43

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.7e-15  Score=99.27  Aligned_cols=79  Identities=16%  Similarity=0.267  Sum_probs=59.3

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEE--ccC---CeEEEeecCcCCCCcceEE
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLV--LPS---GELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~--~~~---g~L~I~~v~~~D~~G~Y~C  146 (167)
                      +.+..+.+|+++.|.|.+.   +.|.|.++|+||+ ..+..      ..++.+  ..+   +.|.|++++.+|+ |.|+|
T Consensus         3 P~~~~v~~G~~~~l~C~v~---g~p~p~v~W~k~g-~~l~~------~~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C   71 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVE---GMEEPDIQWVKDG-AVVQN------LDQLYIPVSEQHWIGFLSLKSVERSDA-GRYWC   71 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEE---SCSSCCEEEEETT-EECCS------SEEEEEEEETTEEEEEEEESSCCGGGC-EEEEE
T ss_pred             CeeEEEcCCCeEEEEEEEE---ecCCceEEEEEee-ccccc------ceeeeeeecccCceeeEEECCCCcccC-EEEEE
Confidence            4567889999999999997   4599999999997 55532      222222  222   3699999999999 99999


Q ss_pred             EeeecC----cceEEEeee
Q psy12724        147 RTKHRL----TGETRLSAT  161 (167)
Q Consensus       147 ~a~n~~----~~~~~l~~~  161 (167)
                      .|.|..    +..+.|.+.
T Consensus        72 ~a~N~~G~~~S~~~~l~V~   90 (91)
T d1rhfa1          72 QVEDGGETEISQPVWLTVE   90 (91)
T ss_dssp             EESSCTTCEECCCEEEEEE
T ss_pred             EEEECCCCEEEEEEEEEEE
Confidence            999986    334556554

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.58  E-value=1.7e-15  Score=99.85  Aligned_cols=74  Identities=20%  Similarity=0.238  Sum_probs=57.4

Q ss_pred             EEEecCeEEEeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeeeecCCceE-EEccCCeEEEeecCcCCCCcceEE
Q psy12724         69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMTESTDGKY-LVLPSGELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        69 ~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~~~~~~r~-~~~~~g~L~I~~v~~~D~~G~Y~C  146 (167)
                      .-.+.+..+.+|+++.|.|.+.+   .|.| .++|+||+ ..+..     ...++ ....++.|.|.+++.+|+ |.|+|
T Consensus         6 ~~~p~~~~v~~g~~~~l~C~~~g---~p~p~~v~W~~~g-~~l~~-----~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C   75 (94)
T d1biha1           6 KDQPAEVLFRENNPTVLECIIEG---NDQGVKYSWKKDG-KSYNW-----QEHNAALRKDEGSLVFLRPQASDE-GHYQC   75 (94)
T ss_dssp             CCCCSEEEEETTSCEEECCCEES---CCSSCEEEEEESS-SBCCT-----TTTTEEECTTSCCEEESSCCGGGC-EEEEE
T ss_pred             EecCCcEEEeCCCeEEEEEEecC---CCCeeEEEEEeee-eeeee-----ecceeeecccceEEEEeccChhcC-eEEEE
Confidence            33456678899999999999984   4765 69999997 45531     22333 334567999999999999 99999


Q ss_pred             EeeecC
Q psy12724        147 RTKHRL  152 (167)
Q Consensus       147 ~a~n~~  152 (167)
                      .|.|..
T Consensus        76 ~a~N~~   81 (94)
T d1biha1          76 FAETPA   81 (94)
T ss_dssp             EEEETT
T ss_pred             EEEeCC
Confidence            999987

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.4e-15  Score=99.27  Aligned_cols=79  Identities=18%  Similarity=0.233  Sum_probs=61.3

Q ss_pred             EecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc--CC-eEEEeecCcCCCCcceEEE
Q psy12724         71 NIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP--SG-ELHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        71 ~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~--~g-~L~I~~v~~~D~~G~Y~C~  147 (167)
                      .+.+..+.+|+++.|.|.+.   |.|.|.++|+||+ ..+.      ..+++.+..  ++ .|.|.+++.+|+ |.|+|.
T Consensus         6 ~p~~~~v~~G~~~~l~C~v~---g~p~p~v~W~k~~-~~l~------~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~   74 (101)
T d2cqva1           6 FPEDQKVRAGESVELFGKVT---GTQPITCTWMKFR-KQIQ------ESEHMKVENSENGSKLTILAARQEHC-GCYTLL   74 (101)
T ss_dssp             CCCSEEEETTCCEEEEEEEE---SSSSCEEEEEESS-SBCC------CSSSEEEEECSSEEEEEETTCCTTTC-EEEEEE
T ss_pred             eCCcEEEeCCCcEEEEEEEE---ecCCCEEEEEeCc-eeec------cCCcEEEEEecceeEEEEeeCCcccC-EEEEEE
Confidence            34577899999999999997   4599999999998 4553      244555433  33 599999999999 999999


Q ss_pred             eeecC---cceEEEee
Q psy12724        148 TKHRL---TGETRLSA  160 (167)
Q Consensus       148 a~n~~---~~~~~l~~  160 (167)
                      |.|..   +..+.|.+
T Consensus        75 a~N~~G~~~~~~~l~V   90 (101)
T d2cqva1          75 VENKLGSRQAQVNLTV   90 (101)
T ss_dssp             EECSSCEEECCEEEEE
T ss_pred             EEECCCEEEEEEEEEE
Confidence            99987   34445555

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.57  E-value=2e-15  Score=100.37  Aligned_cols=70  Identities=19%  Similarity=0.372  Sum_probs=54.1

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceE-EEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY-LVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~-~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +.+..|+++.|.|.+.   |+|.|.++|+||+ ..+.+.   .....+ .....+.|.|.+++.+|+ |.|+|.|+|..
T Consensus        15 ~~v~~G~~v~l~C~~~---g~P~p~i~W~kng-~~l~~~---~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~   85 (97)
T d3dara1          15 HAVPAANTVKFRCPAG---GNPMPTMRWLKNG-KEFKQE---HRIGGYKVRNQHWSLIMESVVPSDK-GNYTCVVENEY   85 (97)
T ss_dssp             EEECTTCCEEEECCEE---EESCCEEEEEETT-EECCGG---GSTTCCEEEGGGTEEEECSCCGGGC-EEEEEEEEETT
T ss_pred             EEECCCCcEEEEEEEe---EECCCEEEEEECC-Eecccc---CceeeEEEcCCcEEEEECCCCcccC-EEEEEEEEECC
Confidence            3567899999999997   4599999999997 566421   111222 233457899999999999 99999999987

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.9e-15  Score=98.49  Aligned_cols=68  Identities=21%  Similarity=0.336  Sum_probs=54.9

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+..+.+|+++.|.|.+.+  +.|.|.++|+|++. .+.       .++. ...++.|.|++++.+|+ |.|+|.|.|..
T Consensus        10 ~~~~v~~G~~~~l~C~~~~--~~p~~~v~W~k~~~-~~~-------~~~~-~~~~~~L~i~~v~~~d~-G~Y~C~a~N~~   77 (89)
T d1gl4b_          10 RSQSVRPGADVTFICTAKS--KSPAYTLVWTRLHN-GKL-------PSRA-MDFNGILTIRNVQPSDA-GTYVCTGSNMF   77 (89)
T ss_dssp             CEEEECTTCCEEEEEEEEE--SSSCCEEEEEEGGG-BCC-------CTTE-EEETTEEEECSCCGGGC-EEEEEEEECSS
T ss_pred             CeEEEeCCCcEEEEEEccC--CCCCCEEEEecCCc-eee-------cccc-EeeceEEEEecCCcccC-EEEEEEEEECC
Confidence            3467889999999999964  45889999999974 432       2233 23578999999999999 99999999987

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.7e-15  Score=94.84  Aligned_cols=61  Identities=20%  Similarity=0.319  Sum_probs=51.8

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +..+++|+++.|.|.+.   |.|.|.++|++++. .+.             ..++.|.|.+++.+|+ |.|+|.|.|..
T Consensus         8 ~~~v~~G~~~~L~C~~~---g~p~P~i~W~~~~~-~~~-------------~~~~~l~i~~v~~~Ds-G~Y~C~a~N~~   68 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESP---PGSSPSVQCRSPRG-KNI-------------QGGKTLSVSQLELQDS-GTWTCTVLQNQ   68 (84)
T ss_dssp             SSCEETTCCEEEEEECC---TTCCCEEEEECTTC-CEE-------------EESSEEEESSCCGGGC-EEEEEEEEETT
T ss_pred             CeEEECCCeEEEEEEeE---cCCchheEEEeecc-cce-------------eeeeeeeeeecccccc-cEEEEEEEeCC
Confidence            45789999999999998   56999999999874 322             1246799999999999 99999999987

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.56  E-value=1e-15  Score=100.62  Aligned_cols=71  Identities=18%  Similarity=0.287  Sum_probs=56.7

Q ss_pred             EecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc---cCCeEEEeecCcCCCCcceEEE
Q psy12724         71 NIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL---PSGELHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        71 ~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~---~~g~L~I~~v~~~D~~G~Y~C~  147 (167)
                      .+++..+.+|+++.|.|.+.   |+|.|.++|+||+ ..+.+      +.++.+.   .++.|.|.+++.+|+ |.|+|.
T Consensus         5 ~P~~~~v~~G~~~~l~C~~~---g~P~p~v~W~~~g-~~l~~------~~~~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~   73 (91)
T d1tnna_           5 KPRSMTVYEGESARFSCDTD---GEPVPTVTWLRKG-QVLST------SARHQVTTTKYKSTFEISSVQASDE-GNYSVV   73 (91)
T ss_dssp             CCCCEECSSSSCCCEEEECC---CSSCCCCEEESSS-STTCS------SSSCEEEECSSEEEEECSSCCSCCC-EEEEEE
T ss_pred             CCcCEEEeCCCcEEEEEEEE---EEeCCeEEEEEee-ccccc------ccceeeeeecceeEEeecCCCHHHC-EEEEEE
Confidence            35677889999999999998   4599999999997 56532      3333322   245799999999999 999999


Q ss_pred             eeecC
Q psy12724        148 TKHRL  152 (167)
Q Consensus       148 a~n~~  152 (167)
                      |.|..
T Consensus        74 a~N~~   78 (91)
T d1tnna_          74 VENSE   78 (91)
T ss_dssp             CBCSS
T ss_pred             EEECC
Confidence            99987

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=7.6e-15  Score=98.54  Aligned_cols=83  Identities=23%  Similarity=0.342  Sum_probs=58.7

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCc-ceeEEEEeCCCeeeEEeeeecCCceEEEccCC-----eEEEeecCcCCCCcceE
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADY-VAVESWISDQGEELFVDMTESTDGKYLVLPSG-----ELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p-~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g-----~L~I~~v~~~D~~G~Y~  145 (167)
                      .++..+..|+++.|.|.+.+   .| .|.++|+|++. .+....   ...+.....++     .|.|.+++.+|+ |.|+
T Consensus        10 ~~~~~v~~G~~v~L~C~v~g---~p~~P~v~W~k~~~-~~~~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~   81 (104)
T d2aw2a1          10 QSEHSILAGDPFELECPVKY---CANRPHVTWCKLNG-TTCVKL---EDRQTSWKEEKNISFFILHFEPVLPNDN-GSYR   81 (104)
T ss_dssp             TEEEEEETTSCEEEEEEEEC---SSSCCEEEEEEECS-SCEEEC---CSSCEEEEECSSCEEEEEEESSCCGGGC-EEEE
T ss_pred             CCeEEEeCCCeEEEEEEEEe---eCCCCEEEEEecCc-cccccc---ceeeeeEEecCCceEEEEEEccccHHHC-CeEE
Confidence            34568899999999999985   47 58999999874 443221   12222222222     499999999999 9999


Q ss_pred             EEeeecC----cceEEEeeeC
Q psy12724        146 CRTKHRL----TGETRLSATK  162 (167)
Q Consensus       146 C~a~n~~----~~~~~l~~~~  162 (167)
                      |.|.|..    +..+.|.++.
T Consensus        82 C~A~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          82 CSANFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EEEEETTEEEECCCEEEEEEC
T ss_pred             EEEEcCCCeEEEEEEEEEEEE
Confidence            9999987    2345666654

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.55  E-value=2.6e-14  Score=93.71  Aligned_cols=78  Identities=14%  Similarity=0.178  Sum_probs=59.1

Q ss_pred             EEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEe
Q psy12724         69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        69 ~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      ..++++..+.+|+++.|.|.+.+  +.|.+.++|+||+ ..+...           ..++.|.|.+++.+|+ |.|+|.|
T Consensus         6 ilq~p~~~v~eG~~v~L~C~~~~--~~p~~~~~W~kng-~~~~~~-----------~~~~~l~I~~v~~~ds-G~Y~C~a   70 (89)
T d1fnla2           6 LLQAPRWVFKEEDPIHLRCHSWK--NTALHKVTYLQNG-KDRKYF-----------HHNSDFHIPKATLKDS-GSYFCRG   70 (89)
T ss_dssp             EEECSCSEEETTCCEEEEEEECT--TCCCEEEEEEETT-EEEEEE-----------EECCCEEESSCCGGGC-EEEEEEE
T ss_pred             EEECCCCeEccCCeEEEEEEecC--CCCCcEEEEEEcc-ccccee-----------ccccccEECccceecc-ceEEEEE
Confidence            34456677899999999999864  3477889999997 454321           1356899999999999 9999999


Q ss_pred             eecC----cceEEEeee
Q psy12724        149 KHRL----TGETRLSAT  161 (167)
Q Consensus       149 ~n~~----~~~~~l~~~  161 (167)
                      .|..    +..+.++++
T Consensus        71 ~n~~~~~~S~~v~itV~   87 (89)
T d1fnla2          71 LVGSKNVSSETVNITIT   87 (89)
T ss_dssp             EETTEEEECCCEEEEEE
T ss_pred             EeCCCCeEEeeEEEEEE
Confidence            9976    334555553

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2e-14  Score=94.02  Aligned_cols=70  Identities=16%  Similarity=0.159  Sum_probs=54.1

Q ss_pred             ecCeE-EEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeee
Q psy12724         72 IMDEH-VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus        72 ~~~~~-v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      +.+.. +.+|+++.|.|.+.   |.|.|.++|+++++ .+.      .+........+.|.|++++.+|+ |.|+|.|.|
T Consensus         7 P~~~~~~~~G~~v~l~C~~~---g~p~p~i~W~~~~~-~~~------~~~~~~~~~~~~L~I~~v~~~d~-G~Y~C~a~N   75 (90)
T d1vcaa2           7 PESRYLAQIGDSVSLTCSTT---GCESPFFSWRTQID-SPL------NGKVTNEGTTSTLTMNPVSFGNE-HSYLCTATC   75 (90)
T ss_dssp             SSSEEEEETTSCEEEEEEEE---SCSSCEEEEEETTC-CCC------SSEEEEETTEEEEEESSCCGGGC-SEEEEEEEE
T ss_pred             CCCcEEEECCCEEEEEEecc---CCCCceEEEEecCc-cce------eeeeeeecCCcEEEEeccccccc-ceEEEEEEe
Confidence            44444 45799999999998   45999999999874 322      22333344456899999999999 999999999


Q ss_pred             cC
Q psy12724        151 RL  152 (167)
Q Consensus       151 ~~  152 (167)
                      ..
T Consensus        76 ~~   77 (90)
T d1vcaa2          76 ES   77 (90)
T ss_dssp             TT
T ss_pred             CC
Confidence            87

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.8e-15  Score=97.25  Aligned_cols=79  Identities=22%  Similarity=0.375  Sum_probs=61.1

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcceEEEe
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      .+|..+.+|+++.|.|.+.    +|.|.+.|+||+ ..+..+    ...++.+..+|   .|.|.+++.+|+ |.|+|+|
T Consensus         7 l~~~~v~~G~~v~l~C~v~----~p~~~v~W~k~~-~~~~~~----~~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a   76 (90)
T d1x44a1           7 LEDTTAYCGERVELECEVS----EDDANVKWFKNG-EEIIPG----PKSRYRIRVEGKKHILIIEGATKADA-AEYSVMT   76 (90)
T ss_dssp             CCCEEEETTEEEEEEEECS----SSSCCCEEEETT-EECCCS----TTCSEEEEEETTEEEEEEEEECTTTC-SEEEEEE
T ss_pred             CCCEEEeCCCcEEEEEEEC----CCCceEEEEEee-cccCCC----CCccEEEEEeCCccEEEECccccccC-EEEEEEE
Confidence            4678899999999999984    377789999997 555421    33456555544   799999999999 9999999


Q ss_pred             eecCcceEEEeee
Q psy12724        149 KHRLTGETRLSAT  161 (167)
Q Consensus       149 ~n~~~~~~~l~~~  161 (167)
                      .|. .++++|++.
T Consensus        77 ~n~-~~~a~l~V~   88 (90)
T d1x44a1          77 TGG-QSSAKLSVD   88 (90)
T ss_dssp             TTE-EEEEEEEEE
T ss_pred             ecc-eEEEEEEEE
Confidence            996 456677663

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=5.6e-15  Score=98.44  Aligned_cols=79  Identities=25%  Similarity=0.358  Sum_probs=57.1

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc-cCCeEEEeecCcCCCCcceEEEeeecC-
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL-PSGELHIRDVGPEDGYKSYQCRTKHRL-  152 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~-~~g~L~I~~v~~~D~~G~Y~C~a~n~~-  152 (167)
                      .++..|+++.|.|.+.|   .|.|.++|+||+ ..+....  ....++... .++.|.|.+++.+|+ |.|+|.|+|.. 
T Consensus        15 ~t~~~G~~v~l~C~~~g---~P~p~i~W~~~g-~~i~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a~N~~G   87 (100)
T d1qz1a3          15 ATANLGQSVTLVCDADG---FPEPTMSWTKDG-EPIENEE--EDDEKHIFSDDSSELTIRNVDKNDE-AEYVCIAENKAG   87 (100)
T ss_dssp             EETTSCCCEEEEEEEEE---ESCCEEEEEETT-EECCCC----CCSSEEECTTSCEEEECSCCGGGC-EEEEEEEEETTE
T ss_pred             EEEcCCCCEEEEEEEEE---ecCCEEEEEeCC-ccccccc--ccceeEEeecCceEEEeCCCCcccC-EEEEEEEEECCC
Confidence            34567999999999984   599999999997 5553211  112233333 356899999999998 99999999987 


Q ss_pred             --cceEEEee
Q psy12724        153 --TGETRLSA  160 (167)
Q Consensus       153 --~~~~~l~~  160 (167)
                        +..+.|.+
T Consensus        88 ~~~~~~~l~V   97 (100)
T d1qz1a3          88 EQDASIHLKV   97 (100)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence              33445554

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.1e-15  Score=100.68  Aligned_cols=75  Identities=20%  Similarity=0.313  Sum_probs=58.4

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCc-ceEE
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYK-SYQC  146 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G-~Y~C  146 (167)
                      +.....+..+.+|+++.|.|.+.   |.|.|.++|+|++. .+.+.     ..++....++.|.|.+++.+|+ | .|+|
T Consensus         5 i~~~~~~~~v~~G~~v~l~C~~~---g~P~p~v~W~~~~~-~~~~~-----~~~~~~~~~~~L~i~~~~~~d~-G~~Y~C   74 (92)
T d2ifga1           5 LKVQVPNASVDVGDDVLLRCQVE---GRGLEQAGWILTEL-EQSAT-----VMKSGGLPSLGLTLANVTSDLN-RKNVTC   74 (92)
T ss_dssp             EEEECCSSCCBTTCCEEEEEEEE---CSSCCCCCEEESCC-CSSEE-----ECCCCCSSEEEEEEESCCSTTT-TCCEEE
T ss_pred             EEEeCCCEEEeCCCEEEEeeecc---CCCCcEEEEEECCc-eeeee-----eeeeeeccceeEEEcccccccc-ceEEEE
Confidence            45556778889999999999998   56999999999983 44321     1222233446899999999998 9 6999


Q ss_pred             EeeecC
Q psy12724        147 RTKHRL  152 (167)
Q Consensus       147 ~a~n~~  152 (167)
                      .|.|..
T Consensus        75 ~a~N~~   80 (92)
T d2ifga1          75 WAENDV   80 (92)
T ss_dssp             CCEETT
T ss_pred             EEEcCC
Confidence            999998

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.2e-14  Score=98.30  Aligned_cols=89  Identities=18%  Similarity=0.260  Sum_probs=63.7

Q ss_pred             eeeEEEecCeEEEeCCcEEEEeeeCCccCCc---ceeEEEEeCCCeeeEEeeeecCCceEEEc------c---CCeEEEe
Q psy12724         66 QSYTVNIMDEHVLKGNSAVLKCHIPSFVADY---VAVESWISDQGEELFVDMTESTDGKYLVL------P---SGELHIR  133 (167)
Q Consensus        66 g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p---~p~i~W~k~~~~~l~~~~~~~~~~r~~~~------~---~g~L~I~  133 (167)
                      +.|...+.+..+.+|++|+|.|.+.+.   |   .|.|+|+|++...+..    ....++...      .   ...|.|.
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~---p~~~~p~v~W~k~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~I~   77 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGA---SLLKPPVVKWFKGKWVDLSS----KVGQHLQLHDSYDRASKVYLFELHIT   77 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECC---SCSSSCEEEEECSTTCCSTT----TCSSSEEEEEEEETTTTEEEEEEEEE
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCC---CCCCCCEEEEEeCceeeecc----cCCceeEeeeeeEEecccCEEEEEEe
Confidence            457777889999999999999999753   5   6889999987322211    011222211      1   1369999


Q ss_pred             ecCcCCCCcceEEEeeecC---cceEEEeeeC
Q psy12724        134 DVGPEDGYKSYQCRTKHRL---TGETRLSATK  162 (167)
Q Consensus       134 ~v~~~D~~G~Y~C~a~n~~---~~~~~l~~~~  162 (167)
                      +++.+|+ |.|+|.|+|..   +..+.|.+..
T Consensus        78 ~v~~~D~-G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          78 DAQPAFT-GGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             SCCTTCC-EEEEEEEEETTEEEEEEEEEEEES
T ss_pred             ccCHHHC-cEEEEEEEECCCeEEEEEEEEEEe
Confidence            9999999 99999999987   4455666643

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.53  E-value=1e-14  Score=96.82  Aligned_cols=72  Identities=14%  Similarity=0.286  Sum_probs=56.2

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc---cCCeEEEeecCcCCCCcceEEEe
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL---PSGELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~---~~g~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      ..+..+.+|+++.|+|.+.+   .|.|.++|+||+ ..+...    ...++...   ..+.|.|.+++.+|+ |.|+|.|
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g---~P~~~v~W~k~g-~~i~~~----~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~C~a   80 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGS---NPMGYPNYFKNG-KDVNGN----PEDRITRHNRTSGKRLLFKTTLPEDE-GVYTCEV   80 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEEC---SSCCCCEEEETT-EECCCC----TTSSEESCSSSTTSEEEESSCCGGGC-EEEEEEE
T ss_pred             CCCEEEecCCeEEEEEEEEE---ecCCEEEEEEee-eecccc----ceeeeeeeeecCCCEEEEEecccccc-EEEEEEE
Confidence            35778899999999999974   599999999998 555321    22333322   235799999999998 9999999


Q ss_pred             eecC
Q psy12724        149 KHRL  152 (167)
Q Consensus       149 ~n~~  152 (167)
                      .|.+
T Consensus        81 ~N~~   84 (97)
T d1biha3          81 DNGV   84 (97)
T ss_dssp             CCSS
T ss_pred             EECC
Confidence            9987

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=2.8e-14  Score=94.51  Aligned_cols=74  Identities=23%  Similarity=0.339  Sum_probs=56.9

Q ss_pred             EEecCeEEEeCCcEEEEeeeCCccCCc-ceeEEEEeCCCeeeEEeeeecCCceEEEcc----CCeEEEeecCcCCCCcce
Q psy12724         70 VNIMDEHVLKGNSAVLKCHIPSFVADY-VAVESWISDQGEELFVDMTESTDGKYLVLP----SGELHIRDVGPEDGYKSY  144 (167)
Q Consensus        70 c~~~~~~v~~G~~a~l~C~~~~~~~~p-~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~----~g~L~I~~v~~~D~~G~Y  144 (167)
                      ..+.+..+.+|+++.|.|.+.+   .| .|.++|+|+++..+.+     ...++.+..    .+.|.|.+++.+|+ |.|
T Consensus         5 i~P~~~~v~~G~~~~l~C~v~g---~p~~~~v~W~~~~g~~~~~-----~~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y   75 (97)
T d1epfa1           5 IVPSQGEISVGESKFFLCQVAG---DAKDKDISWFSPNGEKLSP-----NQQRISVVWNDDDSSTLTIYNANIDDA-GIY   75 (97)
T ss_dssp             EESSSEEEETTCCEEEEEEECC---CSCCCEEEEECTTSCEECC-----BSSSEEEEEEETTEEEEEECSCCGGGC-EEE
T ss_pred             EECCCEEEccCCcEEEEEEEEe---ccCCCEEEEEEeeeeeeee-----ccccEEEEeecCcceEEEcccCchhhc-eEE
Confidence            3456778899999999999985   46 4789999976555432     244554432    24799999999999 999


Q ss_pred             EEEeeecC
Q psy12724        145 QCRTKHRL  152 (167)
Q Consensus       145 ~C~a~n~~  152 (167)
                      +|.|.|..
T Consensus        76 ~C~a~N~~   83 (97)
T d1epfa1          76 KCVVTAED   83 (97)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEeCC
Confidence            99999987

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.5e-14  Score=94.05  Aligned_cols=66  Identities=20%  Similarity=0.183  Sum_probs=52.2

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..+.+|+++.|.|.+.+  +.|.|.++|++++. .+        ..+.....++.|.|.+++.+|+ |.|+|.|.|..
T Consensus        13 ~~~~~G~~~~l~C~~~~--g~p~p~v~W~~~~~-~~--------~~~~~~~~~~~L~i~~v~~~D~-G~Y~C~Asn~~   78 (90)
T d1gsma1          13 VAVALGASRQLTCRLAC--ADRGASVQWRGLDT-SL--------GAVQSDTGRSVLTVRNASLSAA-GTRVCVGSCGG   78 (90)
T ss_dssp             EEEETTCCEEEEEEECC--SSTTCEEEEESSTT-TT--------CCEEEESSEEEEEECSCCGGGC-EEEEEEEEETT
T ss_pred             EEEEeCCcEEEEEEecC--CCCccEEEEEEeee-ee--------eeeeccCceeeEEcCccChhhC-CcEEEEEEeCC
Confidence            45678999999999853  56899999999873 33        1223334456899999999999 99999999987

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.52  E-value=3.3e-14  Score=92.97  Aligned_cols=66  Identities=12%  Similarity=0.223  Sum_probs=53.0

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      +++..+.+|++++|.|.+.+  +.|.+.+.|+||+ ..+...           ..++.|.|.+++.+|+ |.|+|.|.|.
T Consensus         7 ~p~~~v~eG~~v~L~C~~~~--~~p~~~~~W~k~g-~~~~~~-----------~~~~~l~i~~v~~~ds-G~Y~C~a~n~   71 (88)
T d2fcba2           7 TPHLEFQEGETIVLRCHSWK--DKPLVKVTFFQNG-KSKKFS-----------RSDPNFSIPQANHSHS-GDYHCTGNIG   71 (88)
T ss_dssp             CSCSEECTTCCEEEEEEEGG--GCCCEEEEEEETT-EEEEEE-----------SSCCEEEETTCCGGGC-EEEEEEEEET
T ss_pred             CCCCeEecCCeEEEEEEecC--CCCCcEEEEEeec-cccccc-----------ccccccccCccCHHHC-CeEEEEEEeC
Confidence            34567889999999999863  3477889999997 454321           2357899999999999 9999999998


Q ss_pred             C
Q psy12724        152 L  152 (167)
Q Consensus       152 ~  152 (167)
                      .
T Consensus        72 ~   72 (88)
T d2fcba2          72 Y   72 (88)
T ss_dssp             T
T ss_pred             C
Confidence            6

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.52  E-value=4.3e-15  Score=97.81  Aligned_cols=70  Identities=13%  Similarity=0.183  Sum_probs=55.4

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc---cCCeEEEeecCcCCCCcceEEEe
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL---PSGELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~---~~g~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      .++..+.+|+++.|.|.+.   |+|.|.++|+||+ ..+..      +.++.+.   ..+.|.|++++.+|+ |.|+|.|
T Consensus         9 ~~~~~v~~G~~~~l~c~~~---g~P~p~v~W~~~~-~~i~~------~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~c~a   77 (93)
T d1wiua_           9 SRKIKIKAGFTHNLEVDFI---GAPDPTATWTVGD-SGAAL------APELLVDAKSSTTSIFFPSAKRADS-GNYKLKV   77 (93)
T ss_dssp             CCEEEECSSBCCEEEEEEE---CCSSCEEEEECSS-SSCBC------STTSEEEEETTEEEEECTTBCGGGC-EEEEEEE
T ss_pred             CCcEEEeCCCeEEEEEEEE---EecCCeEEEEeee-eecee------eeeeeecccccceeecccccccccc-EEEEEEE
Confidence            3567788999999999998   4599999999998 45532      2333222   233799999999999 9999999


Q ss_pred             eecC
Q psy12724        149 KHRL  152 (167)
Q Consensus       149 ~n~~  152 (167)
                      +|..
T Consensus        78 ~N~~   81 (93)
T d1wiua_          78 KNEL   81 (93)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            9987

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.52  E-value=6.7e-15  Score=97.62  Aligned_cols=76  Identities=21%  Similarity=0.348  Sum_probs=58.5

Q ss_pred             eEEEecCeEEEeC---CcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcce
Q psy12724         68 YTVNIMDEHVLKG---NSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSY  144 (167)
Q Consensus        68 y~c~~~~~~v~~G---~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y  144 (167)
                      |.-.+.+..+.+|   +++.|.|.+.   |+|.|.++|+||+ ..+..    ....++....+..|.|.+++.+|+ |.|
T Consensus         7 f~~~P~~~~~~~g~~~~~v~l~C~~~---g~P~p~v~W~~ng-~~i~~----~~~~~~~~~~~~~l~i~~~~~~d~-G~Y   77 (97)
T d1cs6a1           7 FEEQPAHTLFPEGSAEEKVTLTCRAR---ANPPATYRWKMNG-TELKM----GPDSRYRLVAGDLVISNPVKAKDA-GSY   77 (97)
T ss_dssp             EEECCCCEEEETTCSCCEEEECCEEE---EESCCEEEEEETT-EECCC----STTSSEEEETTEEEEESCCHHHHC-EEE
T ss_pred             EEEeCCCEEEECccCCCeEEEEEEEE---EeCCCEEEEEEee-eeccC----CCCceEEeeeeeEEEEecccccCC-EEE
Confidence            4455667777665   7899999997   4599999999997 56532    134455555555788899999999 999


Q ss_pred             EEEeeecC
Q psy12724        145 QCRTKHRL  152 (167)
Q Consensus       145 ~C~a~n~~  152 (167)
                      +|+|+|..
T Consensus        78 ~C~a~N~~   85 (97)
T d1cs6a1          78 QCVATNAR   85 (97)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEECC
Confidence            99999987

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=3.3e-14  Score=94.00  Aligned_cols=71  Identities=20%  Similarity=0.338  Sum_probs=56.7

Q ss_pred             EEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc-cCCeEEEeecCcCCCCcceEEEe
Q psy12724         70 VNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL-PSGELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        70 c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~-~~g~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      ..+.+..+.+|++++|.|.+.+    |.+.++|+|++ ..+.      .+.++.+. .++.|.|++++.+|+ |.|+|.|
T Consensus         8 i~~~~~~v~~g~~v~l~C~~~~----~~~~v~W~~~~-~~l~------~~~~~~~~~~~~~L~I~~v~~~d~-G~Y~C~a   75 (96)
T d1l6za2           8 LQVTNTTVKELDSVTLTCLSND----IGANIQWLFNS-QSLQ------LTERMTLSQNNSILRIDPIKREDA-GEYQCEI   75 (96)
T ss_dssp             EECSCSEECTTSCEEEEECCCC----SSCEEEEEETT-EECC------CCTTEEEETTTTEEEECSCCGGGC-EEEEEEE
T ss_pred             EEcCceEEeCCCeEEEEEccCC----CCCCEEEEEee-eecc------cccceeccCCceEEEEeccchhhc-eEEEEEE
Confidence            3467788999999999999853    55778999997 5553      24455544 356899999999998 9999999


Q ss_pred             eecC
Q psy12724        149 KHRL  152 (167)
Q Consensus       149 ~n~~  152 (167)
                      .|..
T Consensus        76 ~N~~   79 (96)
T d1l6za2          76 SNPV   79 (96)
T ss_dssp             ESSS
T ss_pred             EeCC
Confidence            9987

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.8e-14  Score=92.22  Aligned_cols=69  Identities=13%  Similarity=0.156  Sum_probs=54.8

Q ss_pred             eeEEEecCeEEEeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceE
Q psy12724         67 SYTVNIMDEHVLKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        67 ~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~  145 (167)
                      .|.-.+.+..+.+|+++.|.|.+.   |+|.| .++|+||+ ..+..      .      ..+.+.|.....+|+ |.|+
T Consensus         3 ~f~~~P~~~~v~~G~~~~l~C~~~---g~P~P~~i~W~k~g-~~i~~------~------~~~~~~l~~~~~~d~-G~Y~   65 (85)
T d1rhfa2           3 FFTVEPKDLAVPPNAPFQLSCEAV---GPPEPVTIVWWRGT-TKIGG------P------APSPSVLNVTGVTQS-TMFS   65 (85)
T ss_dssp             EEEECCCCEEECTTCCEEEEEEEE---CSSSCCEEEEEETT-EECSC------S------EESSEEEEECCCSSC-EEEE
T ss_pred             cEEEeCCcEEEcCCCEEEEEEEEe---cCCcceEEEEEECC-EECCC------C------CCcceEEecCCcccc-EEEE
Confidence            456677888999999999999997   45888 89999997 45421      1      124567777788899 9999


Q ss_pred             EEeeecC
Q psy12724        146 CRTKHRL  152 (167)
Q Consensus       146 C~a~n~~  152 (167)
                      |.|+|..
T Consensus        66 C~A~N~~   72 (85)
T d1rhfa2          66 CEAHNLK   72 (85)
T ss_dssp             EEEEETT
T ss_pred             EEEEcCC
Confidence            9999987

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.50  E-value=2.8e-14  Score=95.85  Aligned_cols=84  Identities=17%  Similarity=0.190  Sum_probs=55.5

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCC-------ceEEEc---cCCeEEEeecCcCCCC
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTD-------GKYLVL---PSGELHIRDVGPEDGY  141 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~-------~r~~~~---~~g~L~I~~v~~~D~~  141 (167)
                      +.++++.+|+++.|.|.+.   |+|.|.|+|+|++. ...........       ......   ..+.|.|.+++.+|+ 
T Consensus        12 P~~~tv~~G~~v~l~C~v~---g~P~p~v~W~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~-   86 (109)
T d2fdbp2          12 PANASTVVGGDVEFVCKVY---SDAQPHIQWIKHVE-KNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA-   86 (109)
T ss_dssp             SCCEEECTTCCEEEEEEEE---CSSCCEEEEEEEC--------------CEEEECCEEEEETTEEEEEEEECSCCGGGC-
T ss_pred             CCCEEEecCCcEEEEEEEE---EcCCCeEEEEecCc-cCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHC-
Confidence            4678999999999999998   45999999999753 21100000000       011111   134799999999999 


Q ss_pred             cceEEEeeecC---cceEEEee
Q psy12724        142 KSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       142 G~Y~C~a~n~~---~~~~~l~~  160 (167)
                      |.|+|.|.|..   ...+.|++
T Consensus        87 G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          87 GEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEE
T ss_pred             eEEEEEEEECCCEEEEEEEEEE
Confidence            99999999987   33445443

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.3e-14  Score=93.93  Aligned_cols=77  Identities=22%  Similarity=0.359  Sum_probs=55.7

Q ss_pred             EecCeEEEeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecC-cCCCCcceE
Q psy12724         71 NIMDEHVLKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVG-PEDGYKSYQ  145 (167)
Q Consensus        71 ~~~~~~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~-~~D~~G~Y~  145 (167)
                      ...+..+.+|++|.|.|.+.+   .|.| .++|+|++. ............|+.+..++   .|.|.++. .+|+ |.|+
T Consensus         8 ~~~~~~v~~G~~v~l~C~v~g---~P~p~~i~W~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~-G~Y~   82 (101)
T d3b5ha1           8 VKSSEHINEGETAMLVCKSES---VPPVTDWAWYKITD-SEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP-GQYR   82 (101)
T ss_dssp             SCSEEEECTTSCEEEEEECCC---SSCCCEEEEEECCS-SSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSS-EEEE
T ss_pred             cCCcEEECcCCeEEEEEEEEe---cCCeeEEEEEeccc-eeeeecccCCCceEEEEeCCCEEEEEEeccccccCC-EEEE
Confidence            345567889999999999985   4766 699999763 22111111234566665433   69999998 5798 9999


Q ss_pred             EEeeecC
Q psy12724        146 CRTKHRL  152 (167)
Q Consensus       146 C~a~n~~  152 (167)
                      |.|.|.+
T Consensus        83 C~A~N~~   89 (101)
T d3b5ha1          83 CNGTSSK   89 (101)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9999998

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.7e-14  Score=97.96  Aligned_cols=86  Identities=10%  Similarity=0.134  Sum_probs=59.9

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCc---ceeEEEEeCCCeeeEEeeeecCCceEEEc------c---CCeEEEeec
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADY---VAVESWISDQGEELFVDMTESTDGKYLVL------P---SGELHIRDV  135 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p---~p~i~W~k~~~~~l~~~~~~~~~~r~~~~------~---~g~L~I~~v  135 (167)
                      |.-.+.+..+.+|++|.|.|.+.|.   |   .|.+.|+|++...+. .   ....++.+.      .   ...|.|.++
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~---p~~~~p~v~W~k~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~L~I~~v   75 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAE---DLLRKPTIKWFKGKWMDLA-S---KAGKHLQLKETFERHSRVYTFEMQIIKA   75 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECC---CSSSCCEEEEEESSSCCHH-H---HTTSSEEEEEEEETTTTEEEEEEEECSC
T ss_pred             EeECCceEEEeCCCEEEEEEEEccC---CCCCCCEEEEEEeeccccc-c---ccceeeeeccceeeEeecCEEEEEEccC
Confidence            3445678899999999999999854   5   689999998732221 1   012222211      1   125999999


Q ss_pred             CcCCCCcceEEEeeecC---cceEEEeee
Q psy12724        136 GPEDGYKSYQCRTKHRL---TGETRLSAT  161 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n~~---~~~~~l~~~  161 (167)
                      +.+|+ |.|+|.|.|..   +..+.|.+.
T Consensus        76 ~~~D~-G~Y~C~a~N~~G~~~~~~~L~V~  103 (113)
T d2dava1          76 KDNFA-GNYRCEVTYKDKFDSCSFDLEVH  103 (113)
T ss_dssp             CTTSC-EEEEEEEECSSCEEEECCEEEEE
T ss_pred             CHHHC-eEEEEEEEeCCCEEEEEEEEEEE
Confidence            99999 99999999987   344566553

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.47  E-value=5e-15  Score=97.13  Aligned_cols=77  Identities=10%  Similarity=0.156  Sum_probs=61.6

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCC---eEEEeecCcCCCCcceEEEe
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSG---ELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      .+|..+.+|++|.|.|.+.    +|.|.++|+||+ ..+.      .+.++.+..+|   .|.|.+++.+|+ |.|+|.|
T Consensus         8 l~d~~v~~G~~~~~~c~vs----~p~~~v~W~k~g-~~i~------~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~c~a   75 (89)
T d1tiua_           8 LYGVEVFVGETAHFEIELS----EPDVHGQWKLKG-QPLT------ASPDCEIIEDGKKHILILHNCQLGMT-GEVSFQA   75 (89)
T ss_dssp             CCCEEEETTSCCCEEEBCS----SSSCCCBCCSSS-CCCC------SSSSCEEEECSSCEEEECCSCCSCCC-SEECCBC
T ss_pred             CcCEEEeCCCcEEEEEEEC----CCCcEEEEEEee-eecc------cceeEEEEeeceeEEEEEcCCChhcC-EEEEEEE
Confidence            3578899999999999983    488889999997 5664      35667666655   599999999999 9999999


Q ss_pred             eecCcceEEEeee
Q psy12724        149 KHRLTGETRLSAT  161 (167)
Q Consensus       149 ~n~~~~~~~l~~~  161 (167)
                      .|.. +.+.|++.
T Consensus        76 ~n~~-~sa~l~V~   87 (89)
T d1tiua_          76 ANAK-SAANLKVK   87 (89)
T ss_dssp             SSCB-CCEEEEEE
T ss_pred             CceE-EEEEEEEE
Confidence            9965 45666653

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=6.2e-14  Score=94.52  Aligned_cols=68  Identities=15%  Similarity=0.240  Sum_probs=55.1

Q ss_pred             eEEEeCCcEEEEee------eCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEe
Q psy12724         75 EHVLKGNSAVLKCH------IPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        75 ~~v~~G~~a~l~C~------~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      +.+..|.++.|.|.      +.   ++|.|.|+|+||+ ..+.      .++++.+..++.|.|.+++.+|+ |.|+|.|
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~---~~p~P~i~W~kdg-~~l~------~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C~a   77 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNE---NNELPKLQWYKDC-KPLL------LDNIHFSGVKDRLIVMNVAEKHR-GNYTCHA   77 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBT---TTBCCCCEEEETT-EECC------CCSSSEEEETTEEEESSCCGGGC-EEEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccC---CCCCCEEEEEECC-cccc------CCCcEEEecCCEEEEcccccccC-cEEEEEE
Confidence            67889999999993      34   6799999999997 5663      23444455678999999999999 9999999


Q ss_pred             eecCc
Q psy12724        149 KHRLT  153 (167)
Q Consensus       149 ~n~~~  153 (167)
                      .|...
T Consensus        78 ~n~~~   82 (103)
T d1iray2          78 SYTYL   82 (103)
T ss_dssp             EEEET
T ss_pred             EECcC
Confidence            99763

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.5e-14  Score=94.25  Aligned_cols=73  Identities=18%  Similarity=0.279  Sum_probs=54.1

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeee------ecCCceEEEccCCeEEEeecCcCCCCcceEEE
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMT------ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~------~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~  147 (167)
                      +..+.+|+++.|+|.+.+   .|.|.++|+|+++ .+.....      .....+. ...++.|.|.+++.+|+ |.|+|.
T Consensus        13 ~v~v~~g~~v~L~C~~~g---~p~p~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~-G~Y~C~   86 (105)
T d1nbqa1          13 EVRIPENNPVKLSCAYSG---FSSPRVEWKFDQG-DTTRLVCYNNKITASYEDRV-TFLPTGITFKSVTREDT-GTYTCM   86 (105)
T ss_dssp             BCCEETTCCCEEECEEES---CSSEEEEEEEEET-TEEEESEETTEECTTTTTTC-EEETTEEECSCCCTTSC-SEEEEE
T ss_pred             eEEEeCCCeEEEEEEeCC---CCCCeeEEEeeee-ceeeeeeccceeecccccee-eecCceEEEecccccce-eeEEEE
Confidence            456889999999999984   5899999999874 3322110      0111222 23467899999999998 999999


Q ss_pred             eeecC
Q psy12724        148 TKHRL  152 (167)
Q Consensus       148 a~n~~  152 (167)
                      |.|..
T Consensus        87 a~n~~   91 (105)
T d1nbqa1          87 VSEEG   91 (105)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            99987

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=2.2e-13  Score=91.73  Aligned_cols=74  Identities=23%  Similarity=0.361  Sum_probs=53.5

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee----eecCCceEEEc-cCCeEEEeecCcCCCCcceEEEee
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM----TESTDGKYLVL-PSGELHIRDVGPEDGYKSYQCRTK  149 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~----~~~~~~r~~~~-~~g~L~I~~v~~~D~~G~Y~C~a~  149 (167)
                      ..+.+|+++.|.|.+..  |+|.|.++|+|++ ..+....    .......+... ..+.|.|.+++.+|+ |.|+|.|+
T Consensus        12 ~~v~~G~~v~L~C~~~~--g~p~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~-G~Y~C~a~   87 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHD--GSPPSEYSWFKDG-ISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDS-GEYYCQAQ   87 (110)
T ss_dssp             SEEETTSCEEEEEECSC--CBSCCEEEEEETT-EESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGC-EEEEEEEE
T ss_pred             CEEecCCeEEEEEEeec--CCCCCEEEEEeCC-eEecCCCceeEEeecCceEEEeecccceEECCCCccCC-EEEEEEEE
Confidence            46789999999999853  5699999999997 4442211    00011223332 356899999999999 99999999


Q ss_pred             ecC
Q psy12724        150 HRL  152 (167)
Q Consensus       150 n~~  152 (167)
                      |.+
T Consensus        88 N~~   90 (110)
T d1f97a2          88 NGY   90 (110)
T ss_dssp             CSS
T ss_pred             ECC
Confidence            987

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.44  E-value=2.6e-14  Score=97.49  Aligned_cols=75  Identities=21%  Similarity=0.333  Sum_probs=56.9

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-eecCCceEEEccCCeEEEeecCcCCCCc---ceEEEee
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-TESTDGKYLVLPSGELHIRDVGPEDGYK---SYQCRTK  149 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-~~~~~~r~~~~~~g~L~I~~v~~~D~~G---~Y~C~a~  149 (167)
                      +.++.+|+++.|.|.+..  |.|.|.+.|+|++. .+.+.. ......++....++.|.|.+++.+|+ |   .|.|.|.
T Consensus        11 ~~t~~EG~~~~L~C~v~~--G~P~p~v~W~k~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~-gd~g~Y~C~A~   86 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPN--AYPKPLITWKKRLS-GADPNADVTDFDRRITAGPDGNLYFTIVTKEDV-SDIYKYVCTAK   86 (111)
T ss_dssp             EECCBTTEEEEECCCCCE--EESCCEEEEEEEET-TSCGGGCCCCCCTTEEECTTSCEEEEEECGGGC-CSSEEEEEEEE
T ss_pred             cccccCCCeEEEEEEccc--CCCCCEEEEEeCCc-cccccccceeeeeeeccccccccEEeeeEeecc-CCceEEEEEEE
Confidence            346789999999999732  45999999999874 332110 00123467778899999999999998 8   5999999


Q ss_pred             ecC
Q psy12724        150 HRL  152 (167)
Q Consensus       150 n~~  152 (167)
                      |.+
T Consensus        87 N~~   89 (111)
T d1biha2          87 NAA   89 (111)
T ss_dssp             CTT
T ss_pred             eCC
Confidence            987

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=1.8e-13  Score=91.01  Aligned_cols=74  Identities=19%  Similarity=0.236  Sum_probs=54.0

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEe
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      +..+.+|+++.|+|.+.+   .|.|.+.|+|+++.......     ......+.. ..++.|.|.+++.+|+ |.|+|.|
T Consensus        10 ~v~v~~G~~v~l~C~~~g---~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~tL~I~~v~~~D~-G~Y~C~a   84 (102)
T d1f97a1          10 DVQVPENESIKLTCTYSG---FSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT-FSSSGITFSSVTRKDN-GEYTCMV   84 (102)
T ss_dssp             EEEEETTCCEEEECEEES---CSSEEEEEEEEETTEEEEEEETTEECGGGTTTEE-EETTEEEESCCCGGGC-EEEEEEE
T ss_pred             cEEEeCCCEEEEEEEcCC---CCCCeEEEEeccccceeeeccccccccceeeEEE-ecCCEEEEeECCccCC-EEEEEEE
Confidence            457889999999999984   48899999997643322111     001122332 3467899999999998 9999999


Q ss_pred             eecC
Q psy12724        149 KHRL  152 (167)
Q Consensus       149 ~n~~  152 (167)
                      .|..
T Consensus        85 ~n~~   88 (102)
T d1f97a1          85 SEEG   88 (102)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            9987

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.7e-13  Score=88.69  Aligned_cols=75  Identities=21%  Similarity=0.240  Sum_probs=56.9

Q ss_pred             EecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeee
Q psy12724         71 NIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus        71 ~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      ++....+.+|++++|.|.+.+  +.|.+.+.|+||+ ..+..      .     ..++.|.|.+++.+|+ |.|+|.|.|
T Consensus         6 q~p~~~V~eG~~v~L~C~~~~--~~~~~~~~w~k~g-~~~~~------~-----~~~~~l~i~~~~~~ds-G~Y~C~a~n   70 (89)
T d1f2qa2           6 QASAEVVMEGQPLFLRCHGWR--NWDVYKVIYYKDG-EALKY------W-----YENHNISITNATVEDS-GTYYCTGKV   70 (89)
T ss_dssp             EESCSEEETTSCEEEEEEEGG--GCCEEEEEEEETT-EECCS------C-----CCSSEEEESSCCGGGC-EEEEEEEEE
T ss_pred             eCCcCeEeCCCEEEEEEEecC--CCCCeEEEEEEee-ecccc------c-----cccceEEEeeeeeecC-cEEEEEEEe
Confidence            455678899999999999964  3466789999997 44421      1     1356799999999999 999999999


Q ss_pred             cC----cceEEEee
Q psy12724        151 RL----TGETRLSA  160 (167)
Q Consensus       151 ~~----~~~~~l~~  160 (167)
                      ..    +..+.+++
T Consensus        71 ~~~~~~S~~v~i~V   84 (89)
T d1f2qa2          71 WQLDYESEPLNITV   84 (89)
T ss_dssp             TTEEEECCCEEEEE
T ss_pred             CCCCeEeeeEEEEE
Confidence            76    34445554

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=7.6e-14  Score=92.13  Aligned_cols=74  Identities=24%  Similarity=0.379  Sum_probs=55.4

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc-CC--eEEEeecCcCCCCcceEEEeeec
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP-SG--ELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~-~g--~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      ..|.+|+++.|.|.+.    +|.|.++|+||+ ..+.+     .+.++.+.. ++  .|.|.++..+|+ |.|+|.|.|.
T Consensus        16 ~~v~~G~~v~l~c~v~----~p~~~v~W~k~g-~~i~~-----~~~~~~~~~~~~~~~L~I~~~~~~D~-G~Y~c~a~n~   84 (94)
T d1pd6a_          16 YQVSKGHKIRLTVELA----DHDAEVKWLKNG-QEIQM-----SGSKYIFESIGAKRTLTISQCSLADD-AAYQCVVGGE   84 (94)
T ss_dssp             EEEETTSCEEEEEECS----SSSSCCEEEESS-SEECC-----CSSSSEEEEETTEEEEEECSCSSSSC-EEEEEEETTE
T ss_pred             EEECcCCeEEEEEEEC----CCCceEEEEEcC-cccee-----eeeeEeeeccCCeEEeecCCCCceec-EEEEEEEeeE
Confidence            3578999999999984    377889999998 56643     234444443 33  599999999999 9999999986


Q ss_pred             CcceEEEee
Q psy12724        152 LTGETRLSA  160 (167)
Q Consensus       152 ~~~~~~l~~  160 (167)
                      . +.+.|.+
T Consensus        85 ~-~s~~l~V   92 (94)
T d1pd6a_          85 K-CSTELFV   92 (94)
T ss_dssp             E-ECCEEEE
T ss_pred             E-EEEEEEE
Confidence            3 4445544

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=6e-14  Score=93.57  Aligned_cols=74  Identities=20%  Similarity=0.372  Sum_probs=53.2

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeee---ecCCceEE-EccCCeEEEeecCcCCCCcceEEEeee
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMT---ESTDGKYL-VLPSGELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~---~~~~~r~~-~~~~g~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      ..+.+|+++.|.|.+.+  |+|.|.++|+|++ ..+.....   .....++. ....+.|.|.+++.+|+ |.|+|.|.|
T Consensus        12 ~~v~~G~~v~l~C~~~~--g~p~p~v~W~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~-G~Y~C~a~N   87 (104)
T d1nbqa2          12 SSATIGNRAVLTCSEQD--GSPPSEYTWFKDG-IVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDT-GEYSCEARN   87 (104)
T ss_dssp             SEEETTSCEEECCCCCS--CBSCCEEEEEETT-CCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGC-CCEEEEEEC
T ss_pred             CEEecCCcEEEEEEeec--CCCCCEEEEEECC-EEccCCCceeEEeeCCcEEEeecccceEECCCCcccC-cEEEEEEEE
Confidence            46788999999999853  5699999999998 45432110   00111111 12356899999999998 999999999


Q ss_pred             cC
Q psy12724        151 RL  152 (167)
Q Consensus       151 ~~  152 (167)
                      ..
T Consensus        88 ~~   89 (104)
T d1nbqa2          88 GY   89 (104)
T ss_dssp             SS
T ss_pred             CC
Confidence            87

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.2e-13  Score=91.13  Aligned_cols=73  Identities=14%  Similarity=0.154  Sum_probs=50.5

Q ss_pred             EecCeEEEeCCcEEEEeeeCCccCCcceeEEE-EeCCCeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcceEE
Q psy12724         71 NIMDEHVLKGNSAVLKCHIPSFVADYVAVESW-ISDQGEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        71 ~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W-~k~~~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~C  146 (167)
                      ..+|..|.+|+++.|.|.+.|   +|.|.+.| .++......+.     .....+..   .+.|.|.+++.+|+ |.|+|
T Consensus         7 ~~~~~~v~~G~~v~l~C~~~g---~p~p~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~L~I~~v~~~D~-G~Y~C   77 (96)
T d2c9aa1           7 RIQNVEVNAGQFATFQCSAIG---RTVAGDRLWLQGIDVRDAPL-----KEIKVTSSRRFIASFNVVNTTKRDA-GKYRC   77 (96)
T ss_dssp             CCCCEEECSSSCEEEEEEEES---CCCSSCEEEEEETTBCCCCE-----EEEEEEETTEEEEEEEECSCCGGGC-SEEEE
T ss_pred             ccCCEEEeCCCEEEEEEEEee---cCCCcEEEEEeeeeeeeecC-----CceeEEEeecCceEEEECCCCHHHC-eEEEE
Confidence            577889999999999999984   47665443 32221222111     12222222   24799999999999 99999


Q ss_pred             EeeecC
Q psy12724        147 RTKHRL  152 (167)
Q Consensus       147 ~a~n~~  152 (167)
                      +|.|..
T Consensus        78 ~a~N~~   83 (96)
T d2c9aa1          78 MIRTEG   83 (96)
T ss_dssp             EEEETT
T ss_pred             EEEeCC
Confidence            999987

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7.4e-14  Score=95.83  Aligned_cols=83  Identities=17%  Similarity=0.137  Sum_probs=56.9

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee----------------e-------ecCCceEEEcc-C-
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM----------------T-------ESTDGKYLVLP-S-  127 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~----------------~-------~~~~~r~~~~~-~-  127 (167)
                      .+..|..|+++.|.|.+.|   .|.|.++|+|++. .+....                .       ....+|+.+.. + 
T Consensus        17 ~~v~v~~G~~v~L~C~v~G---~P~p~i~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~   92 (130)
T d1gxea_          17 DTIVVVAGNKLRLDVPISG---DPAPTVIWQKAIT-QGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKD   92 (130)
T ss_dssp             CEEEESSSSCCCCEEECCS---BSCCEEEEEEECC-CSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETT
T ss_pred             CCEEEEcCCeEEEEEEEEE---ecCCeEEEeeCCe-EccCCccceeeecccccccceeeecCCceeeccCceEEEEECCC
Confidence            3467889999999999985   5999999999863 321100                0       00122333322 1 


Q ss_pred             -CeEEEeecCcCCCCcceEEEeeecC---cceEEEee
Q psy12724        128 -GELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       128 -g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                       ..|.|.+++.+|+ |.|+|.|+|.+   +..+.|.+
T Consensus        93 ~~~L~I~~v~~~D~-G~Y~C~a~N~~G~~~~~~~l~V  128 (130)
T d1gxea_          93 RSIFTVEGAEKEDE-GVYTVTVKNPVGEDQVNLTVKV  128 (130)
T ss_dssp             EEEEECSCCCTTTC-EEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEEECcCChhcC-EEEEEEEEECCCEEEEEEEEEE
Confidence             2599999999999 99999999997   33445544

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.5e-13  Score=90.98  Aligned_cols=80  Identities=11%  Similarity=0.141  Sum_probs=57.6

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC--
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL--  152 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~--  152 (167)
                      ..+.+|+.+.|+|.+..  +.|.+.++|+|++.....+.   ....++. ..++.|.|.+++.+|+ |.|+|.|.|..  
T Consensus        12 ~~~~~~e~~~l~C~~~~--~~~~~~i~W~k~~~~~~~~~---~~~~~~~-~~~~~L~I~~v~~~D~-G~Y~C~a~N~~g~   84 (101)
T d1iray1          12 LVSSANEIDVRPCPLNP--NEHKGTITWYKDDSKTPVST---EQASRIH-QHKEKLWFVPAKVEDS-GHYYCVVRNSSYC   84 (101)
T ss_dssp             EEEETTSCEEECCCCCG--GGCSSEEEEECSSTTSBCCC---CTTSSEE-EETTEEEETTCCGGGC-EEEEEEEEETTEE
T ss_pred             EEEeCCCeEEEEeeCCC--CCCCceEEEEECCccccccc---ccceEEe-ccCCEEEeccceecCC-EEEEEEEECCCCe
Confidence            34567999999998853  45889999999874222211   1233333 3578999999999999 99999999987  


Q ss_pred             -cceEEEeee
Q psy12724        153 -TGETRLSAT  161 (167)
Q Consensus       153 -~~~~~l~~~  161 (167)
                       ...+.|.+.
T Consensus        85 ~~~~~~L~V~   94 (101)
T d1iray1          85 LRIKISAKFV   94 (101)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence             334555553

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=8.6e-13  Score=86.32  Aligned_cols=81  Identities=12%  Similarity=0.054  Sum_probs=56.9

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee------eecCCceEEEc-cCCeEEEeecCcCCCCcceEE
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM------TESTDGKYLVL-PSGELHIRDVGPEDGYKSYQC  146 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~------~~~~~~r~~~~-~~g~L~I~~v~~~D~~G~Y~C  146 (167)
                      +..+.+|++|+|+|...    .|.+.|.|+|++ ..+....      ......|..+. .++.|.|++++.+|+ |.|+|
T Consensus         4 ~v~~~~G~sVtl~c~~~----~p~~~v~W~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~Ds-G~Y~c   77 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN----VPLKEVLWKKQK-DKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDE-DEYEM   77 (93)
T ss_dssp             EEEEETTCCEEECCCCS----SCCSCEEEEETT-EEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGC-EEEEE
T ss_pred             EEEEEECCCEEEEecCC----CCCcEEEEEEec-cccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhC-EEEEE
Confidence            34678999999999863    488899999987 4443211      00112333333 367899999999999 99999


Q ss_pred             EeeecC-cceEEEee
Q psy12724        147 RTKHRL-TGETRLSA  160 (167)
Q Consensus       147 ~a~n~~-~~~~~l~~  160 (167)
                      .|.|.. +.+..|.+
T Consensus        78 ~~~n~~~t~~~~l~V   92 (93)
T d1ccza1          78 ESPNITDTMKFFLYV   92 (93)
T ss_dssp             ECTTCCSCEEEEEEE
T ss_pred             EEECCCcEEEEEEEE
Confidence            999875 44555543

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.35  E-value=1.5e-12  Score=84.15  Aligned_cols=66  Identities=18%  Similarity=0.260  Sum_probs=50.9

Q ss_pred             EEEecCeEEEeCCcEEEEeeeCCccCCccee-EEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEE
Q psy12724         69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAV-ESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        69 ~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~-i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~  147 (167)
                      +..+.+..+.+|++++|.|.+.+   .|.|. +.|+||+ ..+.             ..+..|.|.+++.+|+ |.|+|.
T Consensus         9 ~~~P~~~~v~~G~~vtL~C~~~~---~~~~~~~~~~~~~-~~~~-------------~~~~~l~i~~~~~~d~-G~Y~C~   70 (84)
T d1fnla1           9 FLEPQWYSVLEKDSVTLKCQGAY---SPEDNSTQWFHNE-SLIS-------------SQASSYFIDAATVNDS-GEYRCQ   70 (84)
T ss_dssp             EEESCCSEEETTCCEEEEEECCC---BTTBCCCEEEETT-EEEE-------------SSCSEEEESSCCGGGC-EEEEEE
T ss_pred             EECCCCcEEeCCCeEEEEEEecc---CCCCeEEEEeeec-eeee-------------ecceeeEecCCcccCC-EEEEEE
Confidence            34455678999999999999985   46664 4567775 3332             1246799999999999 999999


Q ss_pred             eeecC
Q psy12724        148 TKHRL  152 (167)
Q Consensus       148 a~n~~  152 (167)
                      |.|..
T Consensus        71 a~~s~   75 (84)
T d1fnla1          71 TNLST   75 (84)
T ss_dssp             CSSSC
T ss_pred             ccCCC
Confidence            99876

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.5e-13  Score=89.27  Aligned_cols=59  Identities=10%  Similarity=0.027  Sum_probs=47.7

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+.++.+|+++.|.|.+.   |+|.|.++|+||+. .+.+              .  +.|.+++.+|+ |.|+|.|.|..
T Consensus        12 ~~~~~~~G~~~~l~C~a~---G~P~P~v~W~k~g~-~~~~--------------~--~~~~~v~~~d~-G~Y~C~A~N~~   70 (84)
T d2oz4a3          12 GNWTWPENSQQTPMCQAW---GNPLPELKCLKDGT-FPLP--------------I--GESVTVTRDLE-GTYLCRARSTQ   70 (84)
T ss_dssp             SEEEEETTCEECCCCCCE---EESCCEEEEEETTT-EECC--------------T--TSCEECCGGGC-EEEEEEEEETT
T ss_pred             ccEEEeCCCEEEEEEEEe---EcCccEEEEEEeec-ccee--------------e--eeeeccccCCC-CEEEEEEEcCC
Confidence            356788999999999998   56999999999973 3321              1  23567889999 99999999988

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.32  E-value=2.3e-12  Score=83.33  Aligned_cols=73  Identities=15%  Similarity=0.204  Sum_probs=55.2

Q ss_pred             EEecCeEEEeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEe
Q psy12724         70 VNIMDEHVLKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        70 c~~~~~~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      ..+.+..+.+|++++|.|.+.+   +|.+ .+.|+||+ ..+.             ..++.|.|.+++.+|+ |.|+|.|
T Consensus         9 ~~P~~~~v~~G~~v~L~C~~~~---~~~~~~~~w~~~g-~~~~-------------~~~~~l~i~~v~~~ds-G~Y~C~a   70 (85)
T d2fcba1           9 LEPQWINVLQEDSVTLTCRGTH---SPESDSIQWFHNG-NLIP-------------THTQPSYRFKANNNDS-GEYTCQT   70 (85)
T ss_dssp             EESCCSEEETTCEEEEEEECSS---CCCTTCCEEEETT-EECT-------------TCCSSEEEEECCGGGC-EEEEEEC
T ss_pred             ECCCCeEEcCCCeEEEEEEEee---ccceeEEEeeccc-cccc-------------ccccceEEeeccccCC-cEEEEEC
Confidence            3445678999999999999974   3544 57889987 3431             1256899999999999 9999999


Q ss_pred             eecC-cceEEEee
Q psy12724        149 KHRL-TGETRLSA  160 (167)
Q Consensus       149 ~n~~-~~~~~l~~  160 (167)
                      .|.. +..+.|++
T Consensus        71 ~ns~~S~~v~l~V   83 (85)
T d2fcba1          71 GQTSLSDPVHLTV   83 (85)
T ss_dssp             TTSBCCCCEEEEE
T ss_pred             CCCcccccEEEEE
Confidence            9976 44555554

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.9e-12  Score=83.19  Aligned_cols=74  Identities=18%  Similarity=0.301  Sum_probs=53.7

Q ss_pred             EEEecCeEEEeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEE
Q psy12724         69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        69 ~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~  147 (167)
                      +..+....+.+|+++.|.|.+.+   +|.| .+.|+||+ ..+.             ..++.|.|.+++.+|+ |.|.|.
T Consensus         5 t~~P~~~~v~~G~~v~L~C~~~~---~~~~~~~~~~~~~-~~~~-------------~~~~~l~i~~v~~~d~-G~Y~C~   66 (82)
T d1f2qa1           5 SLNPPWNRIFKGENVTLTCNGNN---FFEVSSTKWFHNG-SLSE-------------ETNSSLNIVNAKFEDS-GEYKCQ   66 (82)
T ss_dssp             EEESSCSEEETTCCEEEECCTTC---C----CCEEEETT-EECS-------------CCSSEEEECSCCGGGC-EEEEEE
T ss_pred             EEcCCCeEEeCCCeEEEEEEEee---eeeecceeeeeee-eeee-------------cccceeEECCCChhhC-CcEEEE
Confidence            44556678999999999999985   4655 44667776 3331             1346799999999999 999999


Q ss_pred             eeecC-cceEEEee
Q psy12724        148 TKHRL-TGETRLSA  160 (167)
Q Consensus       148 a~n~~-~~~~~l~~  160 (167)
                      |.|.. +..+.|++
T Consensus        67 a~~s~~S~~v~l~V   80 (82)
T d1f2qa1          67 HQQVNESEPVYLEV   80 (82)
T ss_dssp             CTTSSCCCCEEEEE
T ss_pred             ecCCCCcccEEEEE
Confidence            99976 44556655

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=1.2e-11  Score=82.12  Aligned_cols=74  Identities=15%  Similarity=0.193  Sum_probs=54.9

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      ....|++|+|+|.-... ......|.|.|++ ..+....    ....++|+.+.++|+|.|+|++.+|+ |.|+|.+.|.
T Consensus         6 ~G~~G~sV~L~~~~~~~-~~~i~~I~W~~~~-~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~Ds-G~Y~c~v~~~   82 (98)
T d1hnga1           6 WGALGHGINLNIPNFQM-TDDIDEVRWERGS-TLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDS-GTYNVTVYST   82 (98)
T ss_dssp             EEETTSCEEECCTTCCC-CTTEEEEEEEETT-EEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGC-EEEEEEEEET
T ss_pred             EEecCCCEEEECCCCCC-ccchheeeeeccc-cceeEEccCCccccCCCeEEECCCccEEEeCCCHHHC-EEEEEEEEeC
Confidence            45789999999964211 2356789999987 4543211    11235678888999999999999999 9999999887


Q ss_pred             C
Q psy12724        152 L  152 (167)
Q Consensus       152 ~  152 (167)
                      .
T Consensus        83 ~   83 (98)
T d1hnga1          83 N   83 (98)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.6e-13  Score=91.93  Aligned_cols=82  Identities=27%  Similarity=0.413  Sum_probs=58.2

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc----cCC---eEEEeecCcCC-CCcc
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL----PSG---ELHIRDVGPED-GYKS  143 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~----~~g---~L~I~~v~~~D-~~G~  143 (167)
                      .+++.+.+|+++.|.|.+.+.  .|.+.+.|++++ ..+...    ...++.+.    .++   .|.|.+++.+| + |.
T Consensus        13 ~~~~~~~~G~~~~l~C~v~~~--~p~~~v~W~~~~-~~i~~~----~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~-G~   84 (115)
T d2crya1          13 TQTQHALHGEKGQIKCFIRST--PPPDRIAWSWKE-NVLESG----TSGRYTVETISTEEGVISTLTISNIVRADFQ-TI   84 (115)
T ss_dssp             ECCCCCCTTSCCCCCEEECCS--SCCSEEEEESSS-CEECSE----EETTEEEEEEEETTEEEEEEECTTCCHHHHH-SC
T ss_pred             CCCEEEecCCEEEEEEEeecC--CCeeEEEEeeee-eeEeee----eeeeEeeeeeccccCcEEEEEEeccchhcCC-eE
Confidence            455677899999999999852  356689999998 455322    12344332    222   59999999999 7 99


Q ss_pred             eEEEeeecC---cceEEEeee
Q psy12724        144 YQCRTKHRL---TGETRLSAT  161 (167)
Q Consensus       144 Y~C~a~n~~---~~~~~l~~~  161 (167)
                      |+|.|.|..   +..++|.+.
T Consensus        85 Y~C~A~N~~G~~~~~~~L~V~  105 (115)
T d2crya1          85 YNCTAWNSFGSDTEIIRLKEQ  105 (115)
T ss_dssp             EEEEEECSSCEEEEEECCCCS
T ss_pred             EEEEEEECCCeEEEEEEEEEE
Confidence            999999998   344455553

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.9e-12  Score=85.93  Aligned_cols=85  Identities=16%  Similarity=0.166  Sum_probs=58.6

Q ss_pred             EecCeEEEeCCcEEEEeeeCCccCCcce--eEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEe
Q psy12724         71 NIMDEHVLKGNSAVLKCHIPSFVADYVA--VESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        71 ~~~~~~v~~G~~a~l~C~~~~~~~~p~p--~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      .+.+..+.+|+.++|.|.+.+  +.|.|  .++|+|++ ..+....   ...   ......|.|+.++.+|+ |.|+|.|
T Consensus        10 ~p~~~~v~~G~~~~L~C~v~g--~~P~p~~~v~W~~~~-~~l~~~~---~~~---~~~~s~l~i~~~~~dd~-g~ytC~A   79 (103)
T d1iama1          10 APLPSWQPVGKQLTLRCQVEG--GAPRAQLTVVLLRGE-KELKREP---AVG---EPAEVTTTVLVRRDHHG-AQFSCRT   79 (103)
T ss_dssp             CCCCSEECTTSEEEEEEEEEC--CBCGGGEEEEEEETT-EEEEEEE---CCT---TTEEEEEEEECCSSCSS-CEEEEEE
T ss_pred             eCCCceEeCCCEEEEEEEecC--CCCCCceEEEEcccc-ccccccc---ccc---ccceEEEEEeeehhHCC-CEEEEEE
Confidence            344567789999999999975  34544  68899997 5664321   010   11234699999999998 9999999


Q ss_pred             eecC---cceEEEee-eCCee
Q psy12724        149 KHRL---TGETRLSA-TKGRL  165 (167)
Q Consensus       149 ~n~~---~~~~~l~~-~~~~~  165 (167)
                      +|.+   +.+..+.+ .|.+|
T Consensus        80 ~n~~g~~~~~~~~~~s~p~~L  100 (103)
T d1iama1          80 ELDLRPQGLELFENTSAPYQL  100 (103)
T ss_dssp             EEECGGGTSCEEEEECCCEEC
T ss_pred             EeCCCCccCeEeeeEcCCCEE
Confidence            9987   44555554 33444

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=5.7e-12  Score=84.27  Aligned_cols=63  Identities=11%  Similarity=0.087  Sum_probs=45.2

Q ss_pred             CcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC-----CeEEEeecCcCCCCcceEEEeeecC
Q psy12724         81 NSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS-----GELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        81 ~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~-----g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ....|.|.+.   |.|.|.++|+||+ ..+.+.    ...++....+     +.|.|.+++.+|+ |.|+|.|+|..
T Consensus        18 ~~~~i~~~v~---G~P~P~v~W~~n~-~~i~~~----~~~~~~~~~~~~~~~~~L~i~~~~~~D~-G~Y~C~a~N~~   85 (105)
T d1wwca_          18 LEHCIEFVVR---GNPPPTLHWLHNG-QPLRES----KIIHVEYYQEGEISEGCLLFNKPTHYNN-GNYTLIAKNPL   85 (105)
T ss_dssp             CEEEEEEEEE---CSSCCEEEEEETT-EECCCS----SSEEEEEEECSSEEEEEEEEESCCGGGC-EEEEEEEEETT
T ss_pred             EEEEEEEEEE---EeCCCeEEEEeCc-cccCCC----cceeeeEEeecccceEEEEEeecccccc-eEEEEEEEcCC
Confidence            3445778887   5599999999997 565321    1112222222     3599999999998 99999999997

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=4.8e-12  Score=84.61  Aligned_cols=71  Identities=8%  Similarity=0.070  Sum_probs=51.4

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc----c----CCeEEEeecCcCCCCcceEEEeee
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL----P----SGELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~----~----~g~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      .++...+.|.+.   |+|.|.++|+||+ ..|..      +.++.+.    .    .+.|.|.+++.+|+ |.|+|.|+|
T Consensus        15 ~~~~~~i~~~v~---G~P~P~i~W~~~g-~~l~~------~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~-G~Y~C~a~N   83 (103)
T d1wwbx_          15 SDHHWCIPFTVK---GNPKPALQWFYNG-AILNE------SKYICTKIHVTNHTEYHGCLQLDNPTHMNN-GDYTLIAKN   83 (103)
T ss_dssp             CCCEEEEEEEEE---CSSCCEEEEEETT-EEECC------CSSEEEEEEEECSSEEEEEEEEESCCGGGC-EEEEEEEEC
T ss_pred             cceeEEEEEEEE---EeCCCEEEEEECC-EEeee------eeeeeeeecccccccceEEEEECCCCHHhC-ceEEEEEec
Confidence            466677899997   5699999999997 56632      2222211    1    23699999999998 999999999


Q ss_pred             cC---cceEEEee
Q psy12724        151 RL---TGETRLSA  160 (167)
Q Consensus       151 ~~---~~~~~l~~  160 (167)
                      ..   +..++|.+
T Consensus        84 ~~G~~~~~~~v~V   96 (103)
T d1wwbx_          84 EYGKDEKQISAHF   96 (103)
T ss_dssp             SSCEEEEEEEECC
T ss_pred             cCCEEEEEEEEEE
Confidence            98   33444444

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.9e-12  Score=85.09  Aligned_cols=68  Identities=21%  Similarity=0.272  Sum_probs=48.9

Q ss_pred             EEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCce---EEEc-c--------CCeEEEeecCcCCCCc-c
Q psy12724         77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGK---YLVL-P--------SGELHIRDVGPEDGYK-S  143 (167)
Q Consensus        77 v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r---~~~~-~--------~g~L~I~~v~~~D~~G-~  143 (167)
                      +..|+++.|.|.+.   |+|.|.++|++|+ ..+....   ...+   .... .        ...|.|.+++.+|. | .
T Consensus        14 v~~G~~v~l~C~v~---g~P~p~i~W~~~g-~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~-g~~   85 (107)
T d1iray3          14 VDLGSQIQLICNVT---GQLSDIAYWKWNG-SVIDEDD---PVLGEDYYSVENPANKRRSTLITVLNISEIESRFY-KHP   85 (107)
T ss_dssp             CCTTCCEEEEEEEE---ECTTCEEEEEETT-EECCTTC---SSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGG-SSC
T ss_pred             EeCCCEEEEEEEec---cCCCCeEEEEECC-ccccccc---ceeeeeeeeeccceeeecccceEEEEEeecchHHC-CcE
Confidence            45799999999997   5699999999987 4442110   0000   0110 0        13699999999997 9 5


Q ss_pred             eEEEeeecC
Q psy12724        144 YQCRTKHRL  152 (167)
Q Consensus       144 Y~C~a~n~~  152 (167)
                      |+|.|.|.+
T Consensus        86 Y~C~A~N~~   94 (107)
T d1iray3          86 FTCFAKNTH   94 (107)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEEeCC
Confidence            999999998

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.8e-11  Score=82.30  Aligned_cols=88  Identities=16%  Similarity=0.187  Sum_probs=57.6

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccC---CeEEEeecCcCCCCcceEEEee
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPS---GELHIRDVGPEDGYKSYQCRTK  149 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~---g~L~I~~v~~~D~~G~Y~C~a~  149 (167)
                      ....+.+|+.+.|.|.+.+.-..|.+.|+|+||+ ..+....    ..+.....+   ..|.|......|. |.|+|.|+
T Consensus        10 ~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~-~~i~~~~----~~~~~~~~~~~~s~l~~~~~~~d~g-~~ytC~A~   83 (106)
T d1zxqa1          10 QPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGN-ETLHYET----FGKAAPAPQEATATFNSTADREDGH-RNFSCLAV   83 (106)
T ss_dssp             ESSEECTTSEEEEEEEECSCBCGGGEEEEEEETT-EEEEEEE----CCSSTTCTTCEEEEEEEECCGGGGG-CEEEEEEE
T ss_pred             CCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCC-EEeeecc----cceEeecccceeEEEEEeeehhcCC-cEEEEEEE
Confidence            4457789999999999986312356689999997 5664321    111100111   2477887788887 89999999


Q ss_pred             ecC---cceEEEee-eCCeee
Q psy12724        150 HRL---TGETRLSA-TKGRLV  166 (167)
Q Consensus       150 n~~---~~~~~l~~-~~~~~~  166 (167)
                      |.+   +.+..+.+ .|..|.
T Consensus        84 n~~~~~~~~~~~~~s~p~~l~  104 (106)
T d1zxqa1          84 LDLMSRGGNIFHKHSAPKMLE  104 (106)
T ss_dssp             EECGGGTCCEEEEECCCEECE
T ss_pred             ecCCCCCCeeEecccCCcEEe
Confidence            987   45555555 444443

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.8e-11  Score=81.30  Aligned_cols=67  Identities=9%  Similarity=0.052  Sum_probs=46.1

Q ss_pred             EEeCCcEE---EEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc--------CCeEEEeecCcCCCCcceE
Q psy12724         77 VLKGNSAV---LKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP--------SGELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        77 v~~G~~a~---l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~--------~g~L~I~~v~~~D~~G~Y~  145 (167)
                      +..|..+.   ++|.+.   |.|.|.++|+||+ ..|..+    ...+..+..        .+.|.|.++..+|+ |.|+
T Consensus         9 ~~~g~~~~~~ci~~~v~---G~P~P~v~W~~ng-~~l~~~----~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~-G~Y~   79 (107)
T d1he7a_           9 LHTAVEMHHWCIPFSVD---GQPAPSLRWLFNG-SVLNET----SFIFTEFLEPAANETVRHGCLRLNQPTHVNN-GNYT   79 (107)
T ss_dssp             CCCCCCCCEEEEEEEEC---CSSCCEEEEEETT-EECCCC----SSEEEEEECCCSSCCCEEEEEEEESCCGGGC-EEEE
T ss_pred             ECCCeEEEEEEEEEEEE---EecCCeEEEEEee-eEccCc----cceeeeeeeeeeeeeccceEEEECcccHHHC-cEEE
Confidence            33344444   556787   5599999999997 565321    111222211        13599999999998 9999


Q ss_pred             EEeeecC
Q psy12724        146 CRTKHRL  152 (167)
Q Consensus       146 C~a~n~~  152 (167)
                      |.|+|..
T Consensus        80 C~A~N~~   86 (107)
T d1he7a_          80 LLAANPF   86 (107)
T ss_dssp             EEEEETT
T ss_pred             EEEEeCC
Confidence            9999998

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=1.9e-10  Score=78.44  Aligned_cols=95  Identities=18%  Similarity=0.196  Sum_probs=57.4

Q ss_pred             eeeEEEecC--eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee----------eecCCceEEEcc------C
Q psy12724         66 QSYTVNIMD--EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM----------TESTDGKYLVLP------S  127 (167)
Q Consensus        66 g~y~c~~~~--~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~----------~~~~~~r~~~~~------~  127 (167)
                      |.|++..+.  ..+.+|++|+|+|.+.+........+.|+|++.......+          .+....|.....      +
T Consensus         1 gq~~V~~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   80 (126)
T d1pkoa_           1 GQFRVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGK   80 (126)
T ss_dssp             CCCEEECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTE
T ss_pred             CeEEEECCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCe
Confidence            345555443  5778999999999874321223456899987532211111          001123333322      2


Q ss_pred             CeEEEeecCcCCCCcceEEEeeecC---cceEEEeee
Q psy12724        128 GELHIRDVGPEDGYKSYQCRTKHRL---TGETRLSAT  161 (167)
Q Consensus       128 g~L~I~~v~~~D~~G~Y~C~a~n~~---~~~~~l~~~  161 (167)
                      .+|.|+|++.+|+ |.|.|.+.+..   ...+.|.+.
T Consensus        81 ~sL~I~~v~~~D~-G~Y~C~v~~~~~~~~~~v~L~V~  116 (126)
T d1pkoa_          81 VALRIQNVRFSDE-GGYTCFFRDHSYQEEAAVELKVE  116 (126)
T ss_dssp             EEEEESSCCGGGC-EEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEEchhHC-eEEEEEEEECCCEEEEEEEEEEe
Confidence            3799999999999 99999999875   334456553

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=6.6e-11  Score=79.73  Aligned_cols=74  Identities=15%  Similarity=0.219  Sum_probs=52.7

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCe----eeEEee--------eecCCceEEEccCCeEEEeecCcCCCCc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGE----ELFVDM--------TESTDGKYLVLPSGELHIRDVGPEDGYK  142 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~----~l~~~~--------~~~~~~r~~~~~~g~L~I~~v~~~D~~G  142 (167)
                      ..+.+|++|.|+|....  + ....+.|+|+...    .+....        .+.-.+|..+.++|+|.|++++.+|+ |
T Consensus         9 ~~v~~G~~V~L~c~~~p--~-~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~-G   84 (107)
T d1l6za1           9 PQVAEDNNVLLLVHNLP--L-ALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDM-G   84 (107)
T ss_dssp             SSCCTTCCEEEEEESCC--T-TCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGC-E
T ss_pred             CcccCCCCEEEEecCCC--C-CceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhC-E
Confidence            34679999999998432  2 3457899986421    121110        01124688899999999999999999 9


Q ss_pred             ceEEEeeecC
Q psy12724        143 SYQCRTKHRL  152 (167)
Q Consensus       143 ~Y~C~a~n~~  152 (167)
                      .|+|.+.+.-
T Consensus        85 ~Y~c~v~~~~   94 (107)
T d1l6za1          85 VYTLDMTDEN   94 (107)
T ss_dssp             EEEEEEEETT
T ss_pred             EEEEEEEECC
Confidence            9999997654

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.6e-09  Score=71.10  Aligned_cols=79  Identities=16%  Similarity=0.249  Sum_probs=50.8

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-------eecCCceEEEc----c--CCeEEEeecCcCCCCc
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-------TESTDGKYLVL----P--SGELHIRDVGPEDGYK  142 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-------~~~~~~r~~~~----~--~g~L~I~~v~~~D~~G  142 (167)
                      ...+|++|+|+|....   .....+.|++.....+....       .....+|+...    .  +.+|.|++++.+|+ |
T Consensus         5 ~~~~G~svtL~C~~s~---~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~Ds-G   80 (97)
T d2nxyb1           5 LGKKGDTVELTCTASQ---KKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDS-D   80 (97)
T ss_dssp             EEETTSCEEECCBCSS---SSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGC-E
T ss_pred             EEEcCCcEEEEEEEec---CCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHC-E
Confidence            4468999999999763   24557899986532221111       01123444432    1  22699999999999 9


Q ss_pred             ceEEEeeecCcceEEEe
Q psy12724        143 SYQCRTKHRLTGETRLS  159 (167)
Q Consensus       143 ~Y~C~a~n~~~~~~~l~  159 (167)
                      .|.|.+.+.. .++.|.
T Consensus        81 ~Y~C~v~~~~-~~v~L~   96 (97)
T d2nxyb1          81 TYICEVEDQK-EEVQLL   96 (97)
T ss_dssp             EEEEEETTEE-EEEEEE
T ss_pred             EEEEEEecCC-eEEEEE
Confidence            9999998763 444443

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=3e-08  Score=65.86  Aligned_cols=77  Identities=18%  Similarity=0.225  Sum_probs=46.6

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcce--eEEEEeCCCeeeEEee-----ee----cCCceEEE-ccCCeEEEeecCcCCCCc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVA--VESWISDQGEELFVDM-----TE----STDGKYLV-LPSGELHIRDVGPEDGYK  142 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p--~i~W~k~~~~~l~~~~-----~~----~~~~r~~~-~~~g~L~I~~v~~~D~~G  142 (167)
                      ..+..|++|.|+|........+..  ...|.+++...+....     ..    .-.+|... ..+..|.|+|++.+|+ |
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~-G   82 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDK-G   82 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGC-E
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHC-E
Confidence            357889999999987532111222  3456666543332211     00    01123333 2355799999999999 9


Q ss_pred             ceEEEeeecC
Q psy12724        143 SYQCRTKHRL  152 (167)
Q Consensus       143 ~Y~C~a~n~~  152 (167)
                      .|.|.....-
T Consensus        83 ~Y~C~V~~~~   92 (110)
T d1ncna_          83 LYQCIIHHKK   92 (110)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEecC
Confidence            9999987554

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.81  E-value=8.5e-09  Score=69.29  Aligned_cols=88  Identities=16%  Similarity=0.219  Sum_probs=52.7

Q ss_pred             cCeEEEeCCcEEEEeeeCCc-cCCcceeEEEEeCC--Ce-e--eEEee--------eecCCceEEEcc-----CCeEEEe
Q psy12724         73 MDEHVLKGNSAVLKCHIPSF-VADYVAVESWISDQ--GE-E--LFVDM--------TESTDGKYLVLP-----SGELHIR  133 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~-~~~p~p~i~W~k~~--~~-~--l~~~~--------~~~~~~r~~~~~-----~g~L~I~  133 (167)
                      .+..+..|++|+|+|..... .......+.|+|..  +. .  +....        .+.-.+|+....     +..|.|+
T Consensus         7 ~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   86 (119)
T d1neua_           7 REVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIH   86 (119)
T ss_dssp             SEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEEC
T ss_pred             CeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEEC
Confidence            44678899999999986321 11233478998732  11 1  11100        001124655432     2479999


Q ss_pred             ecCcCCCCcceEEEeeecC-----cceEEEeee
Q psy12724        134 DVGPEDGYKSYQCRTKHRL-----TGETRLSAT  161 (167)
Q Consensus       134 ~v~~~D~~G~Y~C~a~n~~-----~~~~~l~~~  161 (167)
                      |++.+|+ |.|.|.+.+..     .+.++|.++
T Consensus        87 ~v~~~Ds-G~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          87 NLDYSDN-GTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             SCCGGGC-EEEEEEEEC----CCEEEEEEEEEE
T ss_pred             CCChHHC-EEEEEEEEECCCcCceEEEEEEEEE
Confidence            9999999 99999998743     334555553

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.8e-08  Score=66.68  Aligned_cols=76  Identities=14%  Similarity=0.177  Sum_probs=50.0

Q ss_pred             eEEEeCCcEEEEeeeCCccCC-cceeEEEEeCCCeeeEEee------eecCCceEEEccCC--eEEEeecCcCCCCcceE
Q psy12724         75 EHVLKGNSAVLKCHIPSFVAD-YVAVESWISDQGEELFVDM------TESTDGKYLVLPSG--ELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~-p~p~i~W~k~~~~~l~~~~------~~~~~~r~~~~~~g--~L~I~~v~~~D~~G~Y~  145 (167)
                      .++..|++|+|+|.......+ ..-.+.|.+++ ..+....      .+...+|.....+|  +|.|+|++.+|+ |.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~-~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~-G~Y~   81 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEK-KMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDE-GTYE   81 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETT-EEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGC-EEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecc-eEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHC-eEEE
Confidence            467889999999987532111 22467898886 4442221      00112344444434  799999999999 9999


Q ss_pred             EEeeecC
Q psy12724        146 CRTKHRL  152 (167)
Q Consensus       146 C~a~n~~  152 (167)
                      |.+.+..
T Consensus        82 C~V~~~~   88 (105)
T d1dr9a1          82 CVVLKYE   88 (105)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            9988754

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.5e-08  Score=68.08  Aligned_cols=77  Identities=16%  Similarity=0.294  Sum_probs=48.3

Q ss_pred             eEEEeCCcEEEEeeeCCccC-CcceeEEEEeCCCe--e----eEEe-----e---eecCCceEEEccC------CeEEEe
Q psy12724         75 EHVLKGNSAVLKCHIPSFVA-DYVAVESWISDQGE--E----LFVD-----M---TESTDGKYLVLPS------GELHIR  133 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~-~p~p~i~W~k~~~~--~----l~~~-----~---~~~~~~r~~~~~~------g~L~I~  133 (167)
                      ..+.+|++|.|+|...+... .....+.|++....  .    +...     .   .+...+|.....+      ..|.|+
T Consensus        14 v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~   93 (124)
T d1eaja_          14 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVT   93 (124)
T ss_dssp             EEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEEC
T ss_pred             EEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEc
Confidence            35679999999999743211 12346899873211  1    1100     0   0112345555432      369999


Q ss_pred             ecCcCCCCcceEEEeeecC
Q psy12724        134 DVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus       134 ~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +++.+|+ |.|.|.+.|..
T Consensus        94 ~v~~~D~-G~Y~C~v~~~~  111 (124)
T d1eaja_          94 NLQLSDI-GTYQCKVKKAP  111 (124)
T ss_dssp             SCCGGGC-EEEEEEEEETT
T ss_pred             ccEEccC-EEEEEEEEECC
Confidence            9999999 99999999875

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=8e-09  Score=66.25  Aligned_cols=63  Identities=10%  Similarity=0.111  Sum_probs=46.0

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC-ceE-------EEeeeEEEecCeE
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ-DFV-------VSQSYTVNIMDEH   76 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~-~~v-------~~g~y~c~~~~~~   76 (167)
                      +.|..+|++..+.+|+++.|.|.|.+.|.+  -.+.|+|++ ..+..... ..+       .+|.|+|.+.|..
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P--~~i~W~k~g-~~i~~~~~~~~~l~~~~~~d~G~Y~C~A~N~~   72 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEP--VTIVWWRGT-TKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLK   72 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSC--CEEEEEETT-EECSCSEESSEEEEECCCSSCEEEEEEEEETT
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcc--eEEEEEECC-EECCCCCCcceEEecCCccccEEEEEEEEcCC
Confidence            568899999999999999999999988753  169999985 34432211 111       2688888887643

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=1.1e-07  Score=64.12  Aligned_cols=88  Identities=15%  Similarity=0.224  Sum_probs=56.0

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeC--CCee--eEEee----eecCCceEEEcc--CC---eEEEeecCcC
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISD--QGEE--LFVDM----TESTDGKYLVLP--SG---ELHIRDVGPE  138 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~--~~~~--l~~~~----~~~~~~r~~~~~--~g---~L~I~~v~~~  138 (167)
                      +....+.+|++|.|.|...+..  ....+.|+|.  +..+  +.-..    .+..++||.+..  ++   .|.|.+++++
T Consensus         6 P~~l~v~~G~~vtl~C~~~~~~--~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~   83 (114)
T d3bp5a1           6 PAWLTVSEGANATFTCSLSNWS--EDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRN   83 (114)
T ss_dssp             SSEEEEETTCCEEEEEEESCCC--TTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGG
T ss_pred             CCeEEECCCCCEEEEEEECCCC--CcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcC
Confidence            3446788999999999986431  2346899873  2112  11110    112346776643  22   4999999999


Q ss_pred             CCCcceEEEeeecC-------cceEEEeeeC
Q psy12724        139 DGYKSYQCRTKHRL-------TGETRLSATK  162 (167)
Q Consensus       139 D~~G~Y~C~a~n~~-------~~~~~l~~~~  162 (167)
                      |+ |.|.|.+....       ..-++|+|++
T Consensus        84 Ds-g~YyCa~~~~~~~~~~~FG~GT~L~V~~  113 (114)
T d3bp5a1          84 DS-GIYLCGAISLHPKAKIEESPGAELVVTE  113 (114)
T ss_dssp             GC-EEEEEEEECSSSSCCCEECCCEEEEEEC
T ss_pred             CC-eEEEEEEEeCCCCcceEECcCeEEEEEE
Confidence            99 99999886542       4456666654

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.68  E-value=1.1e-07  Score=63.57  Aligned_cols=88  Identities=13%  Similarity=0.173  Sum_probs=54.9

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeC--CCee--eEEee---eecCCceEEEccCC---eEEEeecCcCCCC
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISD--QGEE--LFVDM---TESTDGKYLVLPSG---ELHIRDVGPEDGY  141 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~--~~~~--l~~~~---~~~~~~r~~~~~~g---~L~I~~v~~~D~~  141 (167)
                      +.+..+.+|++|+|.|...+.  .....+.|+|.  +..+  |....   ......++....++   .|.|++++.+|+ 
T Consensus         5 P~svsv~~G~~vtl~C~~s~~--~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds-   81 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTI--SGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDT-   81 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTC--CTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGC-
T ss_pred             CCEEEECCCCCEEEEEEEcCC--CCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCc-
Confidence            345678899999999997543  23345899973  2111  21111   01123344444333   599999999999 


Q ss_pred             cceEEEeeecC-------cceEEEeeeC
Q psy12724        142 KSYQCRTKHRL-------TGETRLSATK  162 (167)
Q Consensus       142 G~Y~C~a~n~~-------~~~~~l~~~~  162 (167)
                      |.|.|.+....       ..-|+|+|.|
T Consensus        82 a~YyCa~~~~~~~~~~~FG~GT~L~V~p  109 (110)
T d2esvd1          82 AVYYCIVVRSSNTGKLIFGQGTTLQVKP  109 (110)
T ss_dssp             EEEEEEEEESCSSCCCCCCCCEEEEEEC
T ss_pred             eEEEEEEeCCCCCCccEECCCEEEEEEe
Confidence            99999875322       3456777765

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.67  E-value=6.2e-08  Score=65.48  Aligned_cols=76  Identities=24%  Similarity=0.315  Sum_probs=49.2

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEe--CCCee--eEEee------eecCCceEEEcc---CC--eEEEeecCc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWIS--DQGEE--LFVDM------TESTDGKYLVLP---SG--ELHIRDVGP  137 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k--~~~~~--l~~~~------~~~~~~r~~~~~---~g--~L~I~~v~~  137 (167)
                      .+..+.+|++|+|+|.....  .....+.|+|  .+..+  +....      .+...+||.+..   ++  .|.|.+++.
T Consensus         8 ~~~~~~~G~~vtL~C~~~~~--~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   85 (116)
T d1tvda_           8 PDQTVASGSEVVLLCTYDTV--YSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRT   85 (116)
T ss_dssp             CCEEEETTCCEEECCEEECC--SSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCG
T ss_pred             CCEEEcCCCCEEEEEEEcCC--ccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccc
Confidence            34678899999999987532  1345789987  22222  11110      011235776542   22  599999999


Q ss_pred             CCCCcceEEEeeec
Q psy12724        138 EDGYKSYQCRTKHR  151 (167)
Q Consensus       138 ~D~~G~Y~C~a~n~  151 (167)
                      +|+ |.|.|.....
T Consensus        86 ~Ds-g~YyCa~~~~   98 (116)
T d1tvda_          86 EDS-ATYYCAFTLP   98 (116)
T ss_dssp             GGC-EEEEEEEECT
T ss_pred             ccc-ccceeeEecC
Confidence            999 9999987654

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.66  E-value=1.6e-08  Score=65.15  Aligned_cols=62  Identities=13%  Similarity=0.109  Sum_probs=46.5

Q ss_pred             eeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCce-----E--------EEeeeEEEecCe
Q psy12724         10 SQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDF-----V--------VSQSYTVNIMDE   75 (167)
Q Consensus        10 ~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~-----v--------~~g~y~c~~~~~   75 (167)
                      .|.|...+.|..+..|+++.|.|.+.|.|.   |.++|+|++ ..+..+....     +        ..|.|+|.+.|.
T Consensus         1 kP~f~~~~~~~~v~~G~~~~l~C~~~g~P~---p~v~W~k~g-~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   75 (89)
T d1cs6a4           1 QPDWLDVITDTEADIGSDLRWSCVASGKPR---PAVRWLRDG-QPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENK   75 (89)
T ss_dssp             EEEEEECCCCEEEETTCCEEEECEEEEESC---CEEEEEETT-EECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCeEEECCCEEECCCCcEEEEEEEEEEcC---CEEEEEEee-ccccccceeeeeeeeEEEEeecccCCEEEEEEEEeC
Confidence            367899999999999999999999998875   479999985 3444322111     1        168888888764

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.65  E-value=3.6e-08  Score=64.13  Aligned_cols=45  Identities=16%  Similarity=0.317  Sum_probs=36.6

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecC
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN   59 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~   59 (167)
                      .++.|.+..|..|+++.|.|.+.+.|..  |.+.|+|+++..+.++.
T Consensus         3 V~i~P~~~~v~~G~~~~l~C~v~g~p~~--~~v~W~~~~g~~~~~~~   47 (97)
T d1epfa1           3 VDIVPSQGEISVGESKFFLCQVAGDAKD--KDISWFSPNGEKLSPNQ   47 (97)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCCSCC--CEEEEECTTSCEECCBS
T ss_pred             EEEECCCEEEccCCcEEEEEEEEeccCC--CEEEEEEeeeeeeeecc
Confidence            4567888999999999999999988753  57999998887665543

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.64  E-value=1.8e-08  Score=65.76  Aligned_cols=47  Identities=11%  Similarity=0.110  Sum_probs=39.2

Q ss_pred             EEeeeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee
Q psy12724          7 AVISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI   57 (167)
Q Consensus         7 av~~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~   57 (167)
                      |+..|.|...+++..+.+|+++.|.|.+.+.|.   |.+.|+|++. .+..
T Consensus         1 s~eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~---p~v~W~k~~~-~i~~   47 (98)
T d1g1ca_           1 SMEAPKIFERIQSQTVGQGSDAHFRVRVVGKPD---PECEWYKNGV-KIER   47 (98)
T ss_dssp             CCEEEEEEECCCCEEEETTSCEEEEEEEEEESC---CEEEEEETTE-ECCC
T ss_pred             CCcCCeEecCCCcEEEcCCCcEEEEEEEEEecC---CeEEEEeCce-EEee
Confidence            456788999999999999999999999998875   4799999853 4433

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=3.8e-08  Score=66.02  Aligned_cols=90  Identities=13%  Similarity=0.220  Sum_probs=52.5

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-eeeEEe--e----eecCCceEEEcc---C--CeEEEeecCcCC
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-EELFVD--M----TESTDGKYLVLP---S--GELHIRDVGPED  139 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~~l~~~--~----~~~~~~r~~~~~---~--g~L~I~~v~~~D  139 (167)
                      +++..+.+|++|+|+|..+.........+.|+|... ..+...  .    .....+|+.+..   +  ..|.|++++.+|
T Consensus         6 P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~D   85 (116)
T d1xeda_           6 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD   85 (116)
T ss_dssp             CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             CCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCC
Confidence            345677899999999987532122234578987431 111111  0    011234444432   2  269999999999


Q ss_pred             CCcceEEEeeecC---cceEEEeeeC
Q psy12724        140 GYKSYQCRTKHRL---TGETRLSATK  162 (167)
Q Consensus       140 ~~G~Y~C~a~n~~---~~~~~l~~~~  162 (167)
                      + |.|.|.+....   .-.+.|+|..
T Consensus        86 s-G~Y~C~v~~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          86 S-GRYKCGLGINSRGLSFDVSLEVLE  110 (116)
T ss_dssp             C-EEEEEEESCGGGCCEEEEEEEEEC
T ss_pred             C-EEEEEEEEcCCCCceEeEEEEEEC
Confidence            9 99999886543   2244555543

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=8.1e-08  Score=63.18  Aligned_cols=44  Identities=16%  Similarity=0.369  Sum_probs=36.3

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceee
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ   56 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~   56 (167)
                      |-|...+.+..|..|+++.|.|.+.+.|..  |.|+|.|+++....
T Consensus         4 ~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~--P~v~W~k~~~~~~~   47 (104)
T d2aw2a1           4 QLYIKRQSEHSILAGDPFELECPVKYCANR--PHVTWCKLNGTTCV   47 (104)
T ss_dssp             EECCCTTEEEEEETTSCEEEEEEEECSSSC--CEEEEEEECSSCEE
T ss_pred             cEEEecCCeEEEeCCCeEEEEEEEEeeCCC--CEEEEEecCccccc
Confidence            457778889999999999999999998753  58999998765443

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=3.1e-08  Score=63.00  Aligned_cols=54  Identities=19%  Similarity=0.234  Sum_probs=41.1

Q ss_pred             EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE------EEeeeEEEecCe
Q psy12724         19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV------VSQSYTVNIMDE   75 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v------~~g~y~c~~~~~   75 (167)
                      +..|.+|+++.|.|.+.+.|.   |.+.|.++++.....+....+      .+|.|+|.+.|.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~---P~i~W~~~~~~~~~~~~~l~i~~v~~~DsG~Y~C~a~N~   67 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSS---PSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQN   67 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCC---CEEEEECTTCCEEEESSEEEESSCCGGGCEEEEEEEEET
T ss_pred             CeEEECCCeEEEEEEeEcCCc---hheEEEeecccceeeeeeeeeeecccccccEEEEEEEeC
Confidence            567999999999999999886   489999997765543322211      279999999764

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=1.3e-07  Score=62.62  Aligned_cols=79  Identities=19%  Similarity=0.259  Sum_probs=48.1

Q ss_pred             ecCeEEEeCCcEEEEeeeCC--ccCC-cceeEEEEeCCCee-eEEee-------eecCCceEEEcc-----CCeEEEeec
Q psy12724         72 IMDEHVLKGNSAVLKCHIPS--FVAD-YVAVESWISDQGEE-LFVDM-------TESTDGKYLVLP-----SGELHIRDV  135 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~--~~~~-p~p~i~W~k~~~~~-l~~~~-------~~~~~~r~~~~~-----~g~L~I~~v  135 (167)
                      +++..+.+|++|.|+|....  .... ..-.+.|.+..... .....       .+...+|+.+..     +..|.|+|+
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   86 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL   86 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence            34567899999999998631  1011 11234677743211 11100       011245676653     236999999


Q ss_pred             CcCCCCcceEEEeeec
Q psy12724        136 GPEDGYKSYQCRTKHR  151 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n~  151 (167)
                      +.+|+ |.|.|.+...
T Consensus        87 ~~~Ds-G~Y~C~v~~~  101 (118)
T d1qfoa_          87 KPEDS-GTYNFRFEIS  101 (118)
T ss_dssp             CGGGC-EEEEEEEECC
T ss_pred             ChhHC-EEEEEEEEeC
Confidence            99999 9999988754

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.59  E-value=1e-07  Score=64.11  Aligned_cols=76  Identities=21%  Similarity=0.350  Sum_probs=49.6

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC----eeeEEeee---ecCCceEEEccC-----CeEEEeecCcCCC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG----EELFVDMT---ESTDGKYLVLPS-----GELHIRDVGPEDG  140 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~----~~l~~~~~---~~~~~r~~~~~~-----g~L~I~~v~~~D~  140 (167)
                      ....+.+|++|+|.|..+..   +...+.|+|...    ..|.....   ....+|+....+     -.|.|++++.+|+
T Consensus         8 ~~~~~~~G~~vtL~C~~~~~---~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Ds   84 (114)
T d2cdea1           8 QSLIILEGKNCTLQCNYTVS---PFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDS   84 (114)
T ss_dssp             SEEEEETTCCCEEEEEECCS---CCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGC
T ss_pred             CEEEEeCCCCEEEEEEEcCC---CccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhC
Confidence            34678899999999998643   445689997321    11211110   011245554422     2599999999999


Q ss_pred             CcceEEEeeecC
Q psy12724        141 YKSYQCRTKHRL  152 (167)
Q Consensus       141 ~G~Y~C~a~n~~  152 (167)
                       |.|.|.+.+..
T Consensus        85 -g~Y~Ca~~~~~   95 (114)
T d2cdea1          85 -ASYICVVSDRG   95 (114)
T ss_dssp             -SEEEEEEECSC
T ss_pred             -cccceeeecCC
Confidence             99999998654

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1e-07  Score=62.47  Aligned_cols=70  Identities=10%  Similarity=0.144  Sum_probs=46.5

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceE-EEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKY-LVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~-~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +..|..|++|+|.|..+.    +.....|+|++. ......   ..... .-.....+.|.+++.+|+ |.|+|...|..
T Consensus        15 ~~~V~~G~~VTL~C~~~~----~~~~f~l~k~g~-~~~~~~---~~~~~~~~~~~a~F~l~~vt~~~~-G~Y~C~y~~~~   85 (99)
T d1ucta1          15 SPVIPLDGSVKIQCQAIR----EAYLTQLMIIKN-STYREI---GRRLKFWNETDPEFVIDHMDANKA-GRYQCQYRIGH   85 (99)
T ss_dssp             CSEEETTCCEEEEECCCT----TCSEEEEEEEET-TEEEEC---SEECC----CCCEEEECSCCGGGC-EEEEEEEEETT
T ss_pred             CCceeCCCeEEEEEcCCC----CCcEEEEEECCC-cCceec---cccccCCCCceEEEEecCCCHHHC-ceEEEEEECCC
Confidence            346788999999999863    455678888863 221110   00000 011234699999999999 99999998865

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.5e-07  Score=62.41  Aligned_cols=76  Identities=17%  Similarity=0.396  Sum_probs=47.0

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEee---eecCCceEEEc---cCC--eEEEeecCcCCCCc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDM---TESTDGKYLVL---PSG--ELHIRDVGPEDGYK  142 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~---~~~~~~r~~~~---~~g--~L~I~~v~~~D~~G  142 (167)
                      ..+.+|++|.|+|..+.. ......+.|+|.. +..   +....   .....+|+.+.   .++  .|.|.+++.+|+ |
T Consensus         6 v~~~~G~svtl~C~~~~~-~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~Ds-G   83 (108)
T d1hkfa_           6 LQSVAGQTLTVRCQYPPT-GSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS-G   83 (108)
T ss_dssp             EEECTTCCEEEEEECCCC-TTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC-E
T ss_pred             EEEcCCCCEEEEEEECCC-CCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCC-E
Confidence            456789999999987532 1123457898732 111   11111   01123455443   233  699999999999 9


Q ss_pred             ceEEEeeecC
Q psy12724        143 SYQCRTKHRL  152 (167)
Q Consensus       143 ~Y~C~a~n~~  152 (167)
                      .|.|......
T Consensus        84 ~Y~C~v~~~~   93 (108)
T d1hkfa_          84 HYWCRIYRPS   93 (108)
T ss_dssp             EEEEEEECTT
T ss_pred             EEEEEEecCC
Confidence            9999887543

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=98.57  E-value=4.6e-08  Score=64.18  Aligned_cols=41  Identities=27%  Similarity=0.660  Sum_probs=36.2

Q ss_pred             eeeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724          9 ISQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus         9 ~~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +.+.|...+++..+.+|+++.|.|.+.+.|.   |.+.|+|++.
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~---p~v~W~k~~~   47 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPD---PEVMWFKDDN   47 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESC---CEEEEEETTE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccC---CeEEEEeeec
Confidence            5678999999999999999999999998875   4799999854

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.56  E-value=3.4e-07  Score=61.33  Aligned_cols=76  Identities=18%  Similarity=0.246  Sum_probs=46.5

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeC--CCee--eEEeeee----cCCce--EEEccCC---eEEEeecCcCCC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISD--QGEE--LFVDMTE----STDGK--YLVLPSG---ELHIRDVGPEDG  140 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~--~~~~--l~~~~~~----~~~~r--~~~~~~g---~L~I~~v~~~D~  140 (167)
                      +..+.+|++|+|.|.....  .....+.|+|.  ++.+  +......    ...++  +....++   .|.|++++.+|+
T Consensus         9 ~v~v~~G~~VtL~C~~~~~--~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   86 (114)
T d2ak4d1           9 EISVVEKEDVTLDCVYETR--DTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDS   86 (114)
T ss_dssp             EEEEETTCCEEECCEEECS--CSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGC
T ss_pred             eEEEeCCCCEEEEEEEcCC--CcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccC
Confidence            4578899999999986432  23345799872  2222  2111100    01122  3333333   699999999999


Q ss_pred             CcceEEEeeecC
Q psy12724        141 YKSYQCRTKHRL  152 (167)
Q Consensus       141 ~G~Y~C~a~n~~  152 (167)
                       |.|.|.+....
T Consensus        87 -g~YyCa~~~~~   97 (114)
T d2ak4d1          87 -AVYFCALSGFY   97 (114)
T ss_dssp             -EEEEEEEECSB
T ss_pred             -CCceEeCCCCC
Confidence             99999876543

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.55  E-value=3.3e-08  Score=63.85  Aligned_cols=62  Identities=15%  Similarity=0.223  Sum_probs=45.3

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc--------eE--------EEeeeEEEecC
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD--------FV--------VSQSYTVNIMD   74 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~--------~v--------~~g~y~c~~~~   74 (167)
                      +.|..+|.++.+.+|+++.|.|.+.+.|.+  +.+.|++++. .+..+...        .+        .+|.|+|.+.|
T Consensus         3 P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p--~~v~W~~~g~-~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   79 (94)
T d1biha1           3 PVLKDQPAEVLFRENNPTVLECIIEGNDQG--VKYSWKKDGK-SYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAET   79 (94)
T ss_dssp             CEECCCCSEEEEETTSCEEECCCEESCCSS--CEEEEEESSS-BCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CEEEecCCcEEEeCCCeEEEEEEecCCCCe--eEEEEEeeee-eeeeecceeeecccceEEEEeccChhcCeEEEEEEEe
Confidence            457888999999999999999999988764  3699999854 44322111        11        26888888876


Q ss_pred             e
Q psy12724         75 E   75 (167)
Q Consensus        75 ~   75 (167)
                      .
T Consensus        80 ~   80 (94)
T d1biha1          80 P   80 (94)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=4.8e-08  Score=64.90  Aligned_cols=41  Identities=17%  Similarity=0.162  Sum_probs=34.9

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      .|...|++..|.+|+++.|.|.+.+.|....|.|.|+|++.
T Consensus         6 ~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~   46 (110)
T d2avga1           6 LFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKW   46 (110)
T ss_dssp             SEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTT
T ss_pred             EeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCce
Confidence            47888999999999999999999988753346899999854

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.54  E-value=1.5e-08  Score=66.02  Aligned_cols=61  Identities=23%  Similarity=0.411  Sum_probs=46.6

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--------ce-E--------EEeeeEEEec
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--------DF-V--------VSQSYTVNIM   73 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--------~~-v--------~~g~y~c~~~   73 (167)
                      ++|...|++..+.+|+++.|.|.+.+.|.+   .|.|+|++. .+..+..        .+ +        ..|.|+|.+.
T Consensus         2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p---~v~W~~~~~-~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   77 (97)
T d1koaa1           2 PRFIVKPYGTEVGEGQSANFYCRVIASSPP---VVTWHKDDR-ELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAK   77 (97)
T ss_dssp             CEEEECCCCCEEETTSCEEEEEEEECSSCC---EEEEEETTE-ECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEE
T ss_pred             CEEEEeCCCEEEeCCCcEEEEEEEEEcCCC---EEEEEEeee-ccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEE
Confidence            678999999999999999999999988754   799999854 4433211        11 1        1799999987


Q ss_pred             Ce
Q psy12724         74 DE   75 (167)
Q Consensus        74 ~~   75 (167)
                      |.
T Consensus        78 N~   79 (97)
T d1koaa1          78 NS   79 (97)
T ss_dssp             ET
T ss_pred             EC
Confidence            64

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.53  E-value=2.1e-07  Score=62.09  Aligned_cols=75  Identities=17%  Similarity=0.293  Sum_probs=49.5

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ce-ee-EEee----eecCCceEEEccCC---eEEEeecCcCCCCcc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GE-EL-FVDM----TESTDGKYLVLPSG---ELHIRDVGPEDGYKS  143 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~-~l-~~~~----~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~  143 (167)
                      ..++.+|++|+|.|...+.   ....+.|+|.. +. +. .-..    .+....||....++   .|.|++++.+|+ |.
T Consensus        10 ~ltv~~G~svtl~C~~s~~---~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds-a~   85 (107)
T d1ospl1          10 SFSVSLGDRVTITCKASED---IYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDV-AT   85 (107)
T ss_dssp             EEEECTTCCEEEEEEESSC---CTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGC-SE
T ss_pred             EEEECCCCCEEEEEecCCC---cccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccC-Cc
Confidence            4567889999999998643   23357999832 11 11 1100    11233577665433   699999999999 99


Q ss_pred             eEEEeeecC
Q psy12724        144 YQCRTKHRL  152 (167)
Q Consensus       144 Y~C~a~n~~  152 (167)
                      |.|.+.+..
T Consensus        86 YyCa~~~~~   94 (107)
T d1ospl1          86 YFCQQYWSP   94 (107)
T ss_dssp             EEEEECSSS
T ss_pred             EEEeeccCC
Confidence            999876543

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.53  E-value=1.1e-07  Score=63.39  Aligned_cols=75  Identities=15%  Similarity=0.260  Sum_probs=48.3

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeC--CCeeeEEee-----eecCCceEEEccCC---eEEEeecCcCCCCcc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISD--QGEELFVDM-----TESTDGKYLVLPSG---ELHIRDVGPEDGYKS  143 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~--~~~~l~~~~-----~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~  143 (167)
                      ...+.+|++|+|.|.....   ....+.|+|.  +..+..-..     .+....||.....+   .|.|++++.+|+ |.
T Consensus        10 slsv~~G~svtl~C~~s~~---~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds-a~   85 (106)
T d1i8ka_          10 SLSVATGEKVTIRCMTSTD---IDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDV-GD   85 (106)
T ss_dssp             EEECCTTCCEEEEEEESSC---CTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC-EE
T ss_pred             EEEECCCCCEEEEEEeCCC---CCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccC-EE
Confidence            3467789999999987643   3345799863  322211000     11123466554322   599999999999 99


Q ss_pred             eEEEeeecC
Q psy12724        144 YQCRTKHRL  152 (167)
Q Consensus       144 Y~C~a~n~~  152 (167)
                      |.|.+.+..
T Consensus        86 YyCa~~~~~   94 (106)
T d1i8ka_          86 YYCLQSFNV   94 (106)
T ss_dssp             EEEEECSSS
T ss_pred             EeEecCccc
Confidence            999876643

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.6e-08  Score=66.53  Aligned_cols=42  Identities=10%  Similarity=0.018  Sum_probs=35.3

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCc
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGG   53 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~   53 (167)
                      .|...|+++.|.+|+++.|.|.+.+.|...-|.|.|+|++..
T Consensus         2 ~F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~   43 (113)
T d2dava1           2 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWM   43 (113)
T ss_dssp             SCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSC
T ss_pred             EEeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeecc
Confidence            377889999999999999999999987543468999998643

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.51  E-value=6.3e-07  Score=59.95  Aligned_cols=86  Identities=22%  Similarity=0.306  Sum_probs=52.8

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeC--CCee--eEEeee---ecCCceEEEc--c-C--CeEEEeecCcCCC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISD--QGEE--LFVDMT---ESTDGKYLVL--P-S--GELHIRDVGPEDG  140 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~--~~~~--l~~~~~---~~~~~r~~~~--~-~--g~L~I~~v~~~D~  140 (167)
                      .+..+.+|++|.|.|..++.   ..+.+.|+|.  ++.+  +.....   ....+++...  . +  -.|.|++++.+|+
T Consensus         8 ~~v~v~~G~sv~L~C~~s~~---~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Ds   84 (113)
T d2bnqd1           8 AALSVPEGENLVLNCSFTDS---AIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDS   84 (113)
T ss_dssp             SEEEEETTCCEEEEEEESCC---CEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGC
T ss_pred             CEEEEcCCCCEEEEEEEecC---cccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCC
Confidence            34577899999999998743   4457899973  2111  111110   0012233222  1 2  2699999999999


Q ss_pred             CcceEEEeeecC--------cceEEEeeeC
Q psy12724        141 YKSYQCRTKHRL--------TGETRLSATK  162 (167)
Q Consensus       141 ~G~Y~C~a~n~~--------~~~~~l~~~~  162 (167)
                       |.|.|.+....        ..-|+|+|.|
T Consensus        85 -g~YyCa~~~~~~~~~~~~FG~GT~l~V~p  113 (113)
T d2bnqd1          85 -ATYLCAVRPTSGGSYIPTFGRGTSLIVHP  113 (113)
T ss_dssp             -EEEEEEEEESSSSCCCCEECCCEEEEEEC
T ss_pred             -cEEeEeEecCCCCcccceECCCeEEEEEC
Confidence             99999886433        2335666654

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.51  E-value=8.3e-08  Score=61.75  Aligned_cols=62  Identities=15%  Similarity=0.254  Sum_probs=44.7

Q ss_pred             eceeeE-EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec--CCceE--------EEeeeEEEecCe
Q psy12724         11 QYYEAQ-VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID--NQDFV--------VSQSYTVNIMDE   75 (167)
Q Consensus        11 ~~~~~~-~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~--~~~~v--------~~g~y~c~~~~~   75 (167)
                      +.+... |.+..+.+|+++.|.|.+.+.|.   |.+.|+|+++......  ....+        ..|.|+|.+.|.
T Consensus         5 P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~---p~i~W~k~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   77 (91)
T d1cs6a3           5 PSIKAKFPADTYALTGQMVTLECFAFGNPV---PQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENI   77 (91)
T ss_dssp             EEEEECCCSEEEEETTCCEEEECEEEEESC---CEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEET
T ss_pred             CeEEeeCCCcEEEecCCcEEEEEEEEEccC---CEEEEEecccccceEeeeeeeEEEeCCCCccCCEEEEEEEEEC
Confidence            445544 68899999999999999998875   4799999876433211  11111        279999999764

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.8e-07  Score=61.00  Aligned_cols=69  Identities=13%  Similarity=0.065  Sum_probs=45.7

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +..|..|.+|+|.|..+.    +.....|+|++ .......  ....+  ......+.|.+|+.+|+ |.|+|...+..
T Consensus        12 ~~~V~~G~~VTL~C~~~~----~~~~f~L~k~g-~~~~~~~--~~~~~--~~~~a~F~i~~v~~~~~-G~Y~C~y~~~~   80 (95)
T d1olla1          12 HFMVPKEKQVTICCQGNY----GAVEYQLHFEG-SLFAVDR--PKPPE--RINKVKFYIPDMNSRMA-GQYSCIYRVGE   80 (95)
T ss_dssp             CSEEETTCCEEEEEECCT----TCCEEEEEETT-EEEEEEC--CSSCT--TCCEEEEEESSCCGGGC-EEEEEEEEETT
T ss_pred             CCcccCCCcEEEEEecCC----CccEEEEEECC-CCcceeE--EccCC--CccEEEEEEeeeecCCC-ceEEEEeCCCC
Confidence            456789999999999863    44567888886 3321110  00000  00113699999999999 99999988754

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.7e-07  Score=61.43  Aligned_cols=83  Identities=18%  Similarity=0.283  Sum_probs=50.3

Q ss_pred             eEEEe-cCeEEEeCCcEEEEeeeCC--c--cCCcceeEEEEeCCCee----eEEee------eecCCceEEEccC-----
Q psy12724         68 YTVNI-MDEHVLKGNSAVLKCHIPS--F--VADYVAVESWISDQGEE----LFVDM------TESTDGKYLVLPS-----  127 (167)
Q Consensus        68 y~c~~-~~~~v~~G~~a~l~C~~~~--~--~~~p~p~i~W~k~~~~~----l~~~~------~~~~~~r~~~~~~-----  127 (167)
                      |.... .+.+|.+|++|.|+|....  .  .......+.|++.....    +....      .+...+|+.+..+     
T Consensus         3 ~~~~~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   82 (121)
T d2g5ra1           3 YSLTMQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKN   82 (121)
T ss_dssp             CEEECCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTB
T ss_pred             eEEEeCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCE
Confidence            45444 3457889999999998631  1  01112356898864211    10000      0112356776532     


Q ss_pred             CeEEEeecCcCCCCcceEEEeeec
Q psy12724        128 GELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus       128 g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      -.|.|++++.+|+ |.|.|.+...
T Consensus        83 ~sL~I~~v~~~Ds-G~Y~C~v~~~  105 (121)
T d2g5ra1          83 CTLSIRDARMSDA-GRYFFRMEKG  105 (121)
T ss_dssp             CCEEECSCCGGGC-EEEEEEEEET
T ss_pred             EEEEECCCChHHC-EEEEEEEEeC
Confidence            3699999999999 9999999754

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.50  E-value=2.3e-07  Score=62.17  Aligned_cols=79  Identities=18%  Similarity=0.247  Sum_probs=48.7

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeEEee------eecCCceEEEcc---CCeEEEeecCcCCCCc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELFVDM------TESTDGKYLVLP---SGELHIRDVGPEDGYK  142 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~~~~------~~~~~~r~~~~~---~g~L~I~~v~~~D~~G  142 (167)
                      ....+.+|++|+|.|...+..-.....+.|+|.. +......+      ......++....   +-.|.|++++++|+ |
T Consensus         8 ~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds-a   86 (112)
T d1lgva1           8 ASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDE-A   86 (112)
T ss_dssp             SEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGC-E
T ss_pred             CcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccC-E
Confidence            3457788999999999864322223457999732 11111100      011223444432   23699999999999 9


Q ss_pred             ceEEEeeecC
Q psy12724        143 SYQCRTKHRL  152 (167)
Q Consensus       143 ~Y~C~a~n~~  152 (167)
                      .|.|.+.+..
T Consensus        87 ~YyCa~~~~~   96 (112)
T d1lgva1          87 DYYCSSYDGS   96 (112)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEeeecCC
Confidence            9999886544

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.49  E-value=4.9e-07  Score=60.70  Aligned_cols=84  Identities=17%  Similarity=0.110  Sum_probs=50.6

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeC--CCe--eeEEeee-----e-cCCceEEEccC---CeEEEeecCcCCCC
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISD--QGE--ELFVDMT-----E-STDGKYLVLPS---GELHIRDVGPEDGY  141 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~--~~~--~l~~~~~-----~-~~~~r~~~~~~---g~L~I~~v~~~D~~  141 (167)
                      ..+.+|++|+|.|.....   ..+.+.|+|-  +..  .+.....     + ....++....+   -.|.|++++.+|+ 
T Consensus        10 v~v~~G~svtl~C~~~~~---~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds-   85 (115)
T d1i9ea_          10 VTVSEGASLQLRCKYSYS---ATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDS-   85 (115)
T ss_dssp             EEEETTSCEEECCEEECS---SCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGC-
T ss_pred             EEECCCCCEEEEEEEcCC---CCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccccc-
Confidence            577899999999987532   2345689872  211  1211110     0 01122333332   2699999999999 


Q ss_pred             cceEEEeeecC-----cceEEEeeeC
Q psy12724        142 KSYQCRTKHRL-----TGETRLSATK  162 (167)
Q Consensus       142 G~Y~C~a~n~~-----~~~~~l~~~~  162 (167)
                      |.|.|.+....     ..-|+|+|.|
T Consensus        86 g~YyCa~~~~~~~~~FG~GT~L~V~p  111 (115)
T d1i9ea_          86 AVYFCAVSGFASALTFGSGTKVIVLP  111 (115)
T ss_dssp             EEEEEEEEETTEEEEECCCEEEEEEC
T ss_pred             ceecccccCCCCCCEECCCEEEEEec
Confidence            99999876432     3346666655

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.49  E-value=1.8e-07  Score=60.81  Aligned_cols=69  Identities=23%  Similarity=0.421  Sum_probs=44.1

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEee--eecCCceEEEc--cCC---eEEEeecCcCCCCcceEEEe
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDM--TESTDGKYLVL--PSG---ELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~--~~~~~~r~~~~--~~g---~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      |++|+|.|..+..   ..+.+.|+|.. +..   |....  .....+|+...  .++   .|.|++++++|+ |.|.|.+
T Consensus         1 G~~vtl~C~~~~~---~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Ds-g~YyCa~   76 (94)
T d2gj6d1           1 GAIASLNCTYSDR---GSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDS-ATYLCAV   76 (94)
T ss_dssp             TSCEEEEEEECCT---TCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEE
T ss_pred             CccEEEEEEEccc---cCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcC-ccceeeE
Confidence            7899999998643   34568998732 211   21111  01123456543  222   699999999999 9999987


Q ss_pred             eecC
Q psy12724        149 KHRL  152 (167)
Q Consensus       149 ~n~~  152 (167)
                      ....
T Consensus        77 ~~~~   80 (94)
T d2gj6d1          77 TTDS   80 (94)
T ss_dssp             ESST
T ss_pred             ecCC
Confidence            6543

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=2.8e-08  Score=64.25  Aligned_cols=39  Identities=15%  Similarity=0.315  Sum_probs=34.4

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCc
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGG   53 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~   53 (167)
                      .|...|++..+.+|+++.|.|.+.+.|.   |.+.|+|++..
T Consensus         3 ~F~~~P~~~~v~~G~~~~l~C~v~g~p~---p~v~W~~~~~~   41 (92)
T d1epfa2           3 MFKNAPTPQEFKEGEDAVIVCDVVSSLP---PTIIWKHKGRD   41 (92)
T ss_dssp             EEEECCSSEECCTTSCEEECCEEECSSC---CEEEEEETTEE
T ss_pred             EEEEcCCCEEEeCCCcEEEEEEEeecCC---CeEEEEEcCcc
Confidence            4888999999999999999999998876   47999998653

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.48  E-value=2.4e-07  Score=62.37  Aligned_cols=73  Identities=19%  Similarity=0.266  Sum_probs=47.2

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ce-e--eEEeee---ecCCceEEEcc-----CCeEEEeecCcCCCCc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GE-E--LFVDMT---ESTDGKYLVLP-----SGELHIRDVGPEDGYK  142 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~-~--l~~~~~---~~~~~r~~~~~-----~g~L~I~~v~~~D~~G  142 (167)
                      ..+.+|++|+|.|.....   ..+.+.|+|.. +. +  +.....   .....++.+..     .-.|.|++++++|+ |
T Consensus        11 v~v~~G~~vtL~C~~~~~---~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds-g   86 (115)
T d1lp9e1          11 VTLTEGLPVMLNCTYQST---YSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDS-A   86 (115)
T ss_dssp             EEEETTSCEEECEEEECS---SSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGC-E
T ss_pred             EEECCCCCEEEEEEEeCC---CcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccC-c
Confidence            467899999999998643   44568998742 11 1  211111   11234555542     12599999999999 9


Q ss_pred             ceEEEeeec
Q psy12724        143 SYQCRTKHR  151 (167)
Q Consensus       143 ~Y~C~a~n~  151 (167)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (115)
T d1lp9e1          87 LYYCALFLA   95 (115)
T ss_dssp             EEEEEEEEC
T ss_pred             cceEEEEcC
Confidence            999987543

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.47  E-value=3.7e-07  Score=60.92  Aligned_cols=75  Identities=19%  Similarity=0.263  Sum_probs=47.5

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeC--CCee--eEEee---eecCCceEEEcc---CCeEEEeecCcCCCCc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISD--QGEE--LFVDM---TESTDGKYLVLP---SGELHIRDVGPEDGYK  142 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~--~~~~--l~~~~---~~~~~~r~~~~~---~g~L~I~~v~~~D~~G  142 (167)
                      ....+.+|++|+|.|.....   ....+.|+|.  +..+  +....   ......++....   +..|.|++++++|+ |
T Consensus         9 ~s~~~~~G~svtl~C~~s~~---~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds-a   84 (107)
T d1c5cl1           9 SSLSASLGERVSLTCRTSQE---ISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDF-A   84 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSC---CTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC-S
T ss_pred             CEEEECCCCCEEEEEEeCCC---CCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCC-e
Confidence            34567899999999997643   4445799873  2221  11110   011123443332   23799999999999 9


Q ss_pred             ceEEEeeec
Q psy12724        143 SYQCRTKHR  151 (167)
Q Consensus       143 ~Y~C~a~n~  151 (167)
                      .|.|.+.+.
T Consensus        85 ~YyCa~~~~   93 (107)
T d1c5cl1          85 DYYCLQYAS   93 (107)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEecCcC
Confidence            999987654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.45  E-value=3.4e-07  Score=60.93  Aligned_cols=75  Identities=23%  Similarity=0.291  Sum_probs=48.7

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee-EEee-----eecCCceEEEccCC---eEEEeecCcCCCCcc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL-FVDM-----TESTDGKYLVLPSG---ELHIRDVGPEDGYKS  143 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l-~~~~-----~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~  143 (167)
                      ...+.+|++|+|.|.....   ....+.|+|.. +..+ .-..     .+....|+....++   .|.|.+++.+|+ |.
T Consensus        10 ~l~v~~G~~vtL~C~~~~~---~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds-a~   85 (107)
T d1j1pl_          10 TLSVTPGNSVSLSCRASQS---IGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF-GM   85 (107)
T ss_dssp             EEEECTTCCEEEEEEESSC---CTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC-EE
T ss_pred             eEEECCCCCEEEEEEecCC---CCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCC-EE
Confidence            3567889999999987643   33468998743 1111 1000     01123566554333   699999999999 99


Q ss_pred             eEEEeeecC
Q psy12724        144 YQCRTKHRL  152 (167)
Q Consensus       144 Y~C~a~n~~  152 (167)
                      |-|.+.+..
T Consensus        86 YyCa~~~~~   94 (107)
T d1j1pl_          86 YFCQQANSW   94 (107)
T ss_dssp             EEEEECSSS
T ss_pred             EEEEcCCCC
Confidence            999776543

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.45  E-value=1.1e-07  Score=61.64  Aligned_cols=72  Identities=13%  Similarity=0.223  Sum_probs=49.4

Q ss_pred             eeceeeEEeEEEEEeC---CcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc---------eE-------EEeeeEE
Q psy12724         10 SQYYEAQVYDVFVIKG---NAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD---------FV-------VSQSYTV   70 (167)
Q Consensus        10 ~~~~~~~~~~~~v~~G---~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~---------~v-------~~g~y~c   70 (167)
                      .+.|..+|.+..+.+|   +++.|.|.+.+.|.   |.+.|++++. .+......         .+       ..|.|+|
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~---p~v~W~~ng~-~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C   79 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPP---ATYRWKMNGT-ELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQC   79 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESC---CEEEEEETTE-ECCCSTTSSEEEETTEEEEESCCHHHHCEEEEE
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCC---CEEEEEEeee-eccCCCCceEEeeeeeEEEEecccccCCEEEEE
Confidence            3668889999998877   78999999998875   4899999854 34322111         11       1799999


Q ss_pred             EecCeEEE-eCCcEEE
Q psy12724         71 NIMDEHVL-KGNSAVL   85 (167)
Q Consensus        71 ~~~~~~v~-~G~~a~l   85 (167)
                      .+.|..-. ...+|.|
T Consensus        80 ~a~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          80 VATNARGTVVSREASL   95 (97)
T ss_dssp             EEEETTEEEECCCEEE
T ss_pred             EEEECCCEEEEEEEEE
Confidence            98775432 2335555

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.45  E-value=3.9e-07  Score=60.94  Aligned_cols=76  Identities=18%  Similarity=0.203  Sum_probs=47.7

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee--eEEee----eecCCceEEEccC---CeEEEeecCcCCCCcc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE--LFVDM----TESTDGKYLVLPS---GELHIRDVGPEDGYKS  143 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~--l~~~~----~~~~~~r~~~~~~---g~L~I~~v~~~D~~G~  143 (167)
                      ...+.+|++|.|.|...+.. -....+.|+|.. +..  +.-..    .+...+|+....+   -.|.|++++++|+ |.
T Consensus         9 s~~v~~G~svtl~C~~s~~~-~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds-a~   86 (111)
T d1rzfl1           9 SVSAAPGQKVTISCSGSSSN-IGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDE-AD   86 (111)
T ss_dssp             EEEECTTSCEEEEEECCCCC-CCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGC-SE
T ss_pred             ceEeCCCCCEEEEEEECCcC-CcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccC-cc
Confidence            45778899999999886421 123358998742 111  11110    0112345555433   2699999999999 99


Q ss_pred             eEEEeeec
Q psy12724        144 YQCRTKHR  151 (167)
Q Consensus       144 Y~C~a~n~  151 (167)
                      |-|.+...
T Consensus        87 YyCA~~~~   94 (111)
T d1rzfl1          87 YYCGTWDS   94 (111)
T ss_dssp             EEEEEEET
T ss_pred             eEEeecCC
Confidence            99987654

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=5.2e-08  Score=63.42  Aligned_cols=41  Identities=12%  Similarity=0.144  Sum_probs=34.4

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCc
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGG   53 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~   53 (167)
                      +.+++.++++.+.+|+++.|.|.+.+.+.+  +.|+|+|++..
T Consensus         7 P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~--~~i~W~k~~~~   47 (93)
T d1n26a1           7 PAQEVARGVLTSLPGDSVTLTCPGVEPEDN--ATVHWVLRKPA   47 (93)
T ss_dssp             CCCCCCTTEEEECTTCCEEEECTTSCTTCC--SEEEEEEECSS
T ss_pred             CcEEeCCCCEEEeCCCcEEEEEEeecCCCC--ceEEEEEcccc
Confidence            557888889999999999999999987653  47999998653

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.44  E-value=8.4e-07  Score=58.78  Aligned_cols=85  Identities=22%  Similarity=0.417  Sum_probs=51.6

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeC--CCee--eEEeee---ecCCceEEEc--cC---CeEEEeecCcCCCC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISD--QGEE--LFVDMT---ESTDGKYLVL--PS---GELHIRDVGPEDGY  141 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~--~~~~--l~~~~~---~~~~~r~~~~--~~---g~L~I~~v~~~D~~  141 (167)
                      ...+.+|++|+|.|.....   ....+.|+|.  +..+  +.....   .....++...  ..   -.|.|++++.+|+ 
T Consensus         8 ~~~~~~G~~vtl~C~~~~~---~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds-   83 (110)
T d1u3ha1           8 SLTVWEGETAILNCSYENS---AFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDS-   83 (110)
T ss_dssp             SEEEETTSCEEEEEEECCT---TEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSC-
T ss_pred             EEEEcCCCCEEEEEEecCC---CCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCc-
Confidence            4567899999999998643   3446899874  2111  111110   0011222222  11   2599999999999 


Q ss_pred             cceEEEeeecC------cceEEEeeeC
Q psy12724        142 KSYQCRTKHRL------TGETRLSATK  162 (167)
Q Consensus       142 G~Y~C~a~n~~------~~~~~l~~~~  162 (167)
                      |.|.|.+....      ..-|+|+|.|
T Consensus        84 a~YyCa~~~~~~~~~~FG~GT~L~V~P  110 (110)
T d1u3ha1          84 ATYFCAASANSGTYQRFGTGTKLQVVP  110 (110)
T ss_dssp             SEEEECCEESSSCCCCCCSCEEEEEEC
T ss_pred             eeEeeeecCCCCCCCEECCCeEEEEEC
Confidence            99999876321      4456777654

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=2.2e-07  Score=60.78  Aligned_cols=71  Identities=11%  Similarity=0.033  Sum_probs=49.3

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--------ce-E--------EEeeeEEEecC
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--------DF-V--------VSQSYTVNIMD   74 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--------~~-v--------~~g~y~c~~~~   74 (167)
                      +|...+++..+.+|+++.|+|.+.+.|.   +.+.|+|++.. +..+..        .+ +        .+|.|+|.+.|
T Consensus         2 ~~~~~p~~~~v~~G~~~~l~C~v~g~p~---p~v~W~k~~~~-l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   77 (101)
T d2cqva1           2 QIIQFPEDQKVRAGESVELFGKVTGTQP---ITCTWMKFRKQ-IQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN   77 (101)
T ss_dssp             EESCCCCSEEEETTCCEEEEEEEESSSS---CEEEEEESSSB-CCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred             eEEeeCCcEEEeCCCcEEEEEEEEecCC---CEEEEEeCcee-eccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEE
Confidence            5667788999999999999999998875   47999998653 432211        11 1        17999999887


Q ss_pred             eEEEeCCcEEEE
Q psy12724         75 EHVLKGNSAVLK   86 (167)
Q Consensus        75 ~~v~~G~~a~l~   86 (167)
                      ..-..-.++.|.
T Consensus        78 ~~G~~~~~~~l~   89 (101)
T d2cqva1          78 KLGSRQAQVNLT   89 (101)
T ss_dssp             SSCEEECCEEEE
T ss_pred             CCCEEEEEEEEE
Confidence            543333444444

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.43  E-value=8.7e-07  Score=59.20  Aligned_cols=87  Identities=10%  Similarity=0.119  Sum_probs=55.3

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEee---eecCCceEEEccCC---eEEEeecCcCCCCc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDM---TESTDGKYLVLPSG---ELHIRDVGPEDGYK  142 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~---~~~~~~r~~~~~~g---~L~I~~v~~~D~~G  142 (167)
                      ....+.+|++|.|.|...+..  ....+.|+|.. +..   |....   .+....++.+..++   .|.|++++.+|+ |
T Consensus         6 ~~~~~~~G~svtl~C~~s~~~--~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Ds-a   82 (112)
T d1kgcd1           6 NSMESNEEEPVHLPCNHSTIS--GTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDA-A   82 (112)
T ss_dssp             SEEEEETTSCEEEEEEESCCC--TTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGC-E
T ss_pred             CEEEECCCCCEEEEEEEeCCC--ccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccc-e
Confidence            345678999999999886432  23458999832 111   21111   11223456655544   599999999999 9


Q ss_pred             ceEEEeeecC---------cceEEEeeeC
Q psy12724        143 SYQCRTKHRL---------TGETRLSATK  162 (167)
Q Consensus       143 ~Y~C~a~n~~---------~~~~~l~~~~  162 (167)
                      .|.|.+....         ..-|+|+|.|
T Consensus        83 ~YyCa~~~~~~~~~~~~~FG~GT~LtV~p  111 (112)
T d1kgcd1          83 VYYCILPLAGGTSYGKLTFGQGTILTVHP  111 (112)
T ss_dssp             EEEEECCCCSTTCCCCCCCCCCEEEEEEC
T ss_pred             eEeeeEecCCCCccccCEeCCCEEEEEEe
Confidence            9999765321         3456777765

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.42  E-value=3.8e-07  Score=60.53  Aligned_cols=73  Identities=18%  Similarity=0.330  Sum_probs=47.8

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC--Cee--eEEeee---ecCCceEEEccCC---eEEEeecCcCCCCcc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ--GEE--LFVDMT---ESTDGKYLVLPSG---ELHIRDVGPEDGYKS  143 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~--~~~--l~~~~~---~~~~~r~~~~~~g---~L~I~~v~~~D~~G~  143 (167)
                      ...+.+|++|+|.|.....   ....+.|+|..  ..+  +.....   .....|+....++   .|.|++++++|+ |.
T Consensus         9 s~~~~~G~svtL~C~~s~~---~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds-a~   84 (106)
T d1lk3l1           9 ALTVSPGEKLTISCKASES---VTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDT-AI   84 (106)
T ss_dssp             EEEECTTSCEEEEEEESSC---CTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-EE
T ss_pred             eEEECCCCCEEEEEEeCCC---CCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhC-CC
Confidence            3567799999999998643   33457998742  111  111110   1123466655433   699999999999 99


Q ss_pred             eEEEeee
Q psy12724        144 YQCRTKH  150 (167)
Q Consensus       144 Y~C~a~n  150 (167)
                      |.|.+..
T Consensus        85 YyCa~~~   91 (106)
T d1lk3l1          85 YFCQQSW   91 (106)
T ss_dssp             EEEEECS
T ss_pred             ccccccc
Confidence            9997654

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=5.4e-07  Score=60.46  Aligned_cols=81  Identities=19%  Similarity=0.289  Sum_probs=52.7

Q ss_pred             eEEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC---C-eeeEEee-e--------ecCCceEEEccCC---eEE
Q psy12724         68 YTVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ---G-EELFVDM-T--------ESTDGKYLVLPSG---ELH  131 (167)
Q Consensus        68 y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~---~-~~l~~~~-~--------~~~~~r~~~~~~g---~L~  131 (167)
                      ++-.+.+.++.+|++|+|.|.+...  +....+.|+|..   + ..+.-.. .        .....|+....++   .|.
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~--~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~   80 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLS--NPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLT   80 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCS--SCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEE
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCC--cCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcE
Confidence            4455677788899999999998642  234468998832   1 1111100 0        0112456554333   599


Q ss_pred             EeecCcCCCCcceEEEeeec
Q psy12724        132 IRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus       132 I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      |++++.+|+ |.|.|.+...
T Consensus        81 I~~l~~~Ds-g~YyCa~~~~   99 (114)
T d1akjd_          81 LSDFRRENE-GYYFCSALSN   99 (114)
T ss_dssp             ESSCCGGGC-EEEEEEEEET
T ss_pred             EccCCCCCC-EEEeEeEcCC
Confidence            999999999 9999998754

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.41  E-value=6.2e-07  Score=59.55  Aligned_cols=84  Identities=18%  Similarity=0.283  Sum_probs=52.1

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC--CeeeEEee-----eecCCceEEEccCC---eEEEeecCcCCCCc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ--GEELFVDM-----TESTDGKYLVLPSG---ELHIRDVGPEDGYK  142 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~--~~~l~~~~-----~~~~~~r~~~~~~g---~L~I~~v~~~D~~G  142 (167)
                      ....+.+|++|+|.|.....   ....+.|+|..  ..+.+-..     .+....|+....++   .|.|++++++|+ |
T Consensus         8 ~~l~~~~G~svtl~C~~s~~---~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~Ds-A   83 (106)
T d1a0ql1           8 SSLSASLGGKVTITCKASQD---IKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDI-A   83 (106)
T ss_dssp             SEEEECTTCCEEEEEEESSC---CTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGC-S
T ss_pred             CEEEECCCCCEEEEEEcCCC---CCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCC-E
Confidence            34567899999999987543   33358998832  11211101     01123455554333   699999999999 9


Q ss_pred             ceEEEeeecC---cceEEEee
Q psy12724        143 SYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       143 ~Y~C~a~n~~---~~~~~l~~  160 (167)
                      .|.|.+.+..   ..-|+|+|
T Consensus        84 ~YyCa~~~~~~~FG~GT~LtV  104 (106)
T d1a0ql1          84 TYYCLQYYNLRTFGGGTKLEI  104 (106)
T ss_dssp             EEEEEECSSSCEECCCEEEEE
T ss_pred             eEEEEEeCCCCeECCCeEEEE
Confidence            9999876543   33445544

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.1e-07  Score=63.76  Aligned_cols=75  Identities=17%  Similarity=0.270  Sum_probs=45.8

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee--eEEeee-------ecCCceEEEcc---CC--eEEEeecCcCCC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE--LFVDMT-------ESTDGKYLVLP---SG--ELHIRDVGPEDG  140 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~--l~~~~~-------~~~~~r~~~~~---~g--~L~I~~v~~~D~  140 (167)
                      .+.+|+++.|+|...+. ......+.|+|.. +..  +.-...       +...+|+.+..   .+  .|.|++++.+|+
T Consensus        10 ~v~eG~svtl~C~~~~~-~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Ds   88 (113)
T d1smoa_          10 ELKEGQTLDVKCDYTLE-KFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDS   88 (113)
T ss_dssp             ECCTTCCEEEEEECCHH-HHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEccCCCEEEEEEeCCC-CCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccC
Confidence            44589999999987532 1123467999742 111  111100       00124666542   23  499999999999


Q ss_pred             CcceEEEeeecC
Q psy12724        141 YKSYQCRTKHRL  152 (167)
Q Consensus       141 ~G~Y~C~a~n~~  152 (167)
                       |.|.|......
T Consensus        89 -g~Y~Cav~~~~   99 (113)
T d1smoa_          89 -GLYQCVIYQPP   99 (113)
T ss_dssp             -EEEEEEECCTT
T ss_pred             -ceEEEEEECCC
Confidence             99999875543

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.40  E-value=1.4e-07  Score=60.73  Aligned_cols=62  Identities=11%  Similarity=0.184  Sum_probs=46.0

Q ss_pred             eeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc--------e-E--------EEeeeEEEe
Q psy12724         10 SQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD--------F-V--------VSQSYTVNI   72 (167)
Q Consensus        10 ~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~--------~-v--------~~g~y~c~~   72 (167)
                      .|.|...+++..+.+|+++.|.|.+.+.|.+   .+.|+|++.. +..+...        . +        .+|.|+|.+
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p---~v~W~~~~~~-i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a   77 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDP---TATWTVGDSG-AALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKV   77 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSC---EEEEECSSSS-CBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCC---eEEEEeeeee-ceeeeeeeecccccceeeccccccccccEEEEEEE
Confidence            4667788899999999999999999998864   7999998653 3322111        1 1        168888888


Q ss_pred             cCe
Q psy12724         73 MDE   75 (167)
Q Consensus        73 ~~~   75 (167)
                      .|.
T Consensus        78 ~N~   80 (93)
T d1wiua_          78 KNE   80 (93)
T ss_dssp             EET
T ss_pred             EEC
Confidence            664

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.40  E-value=6.5e-07  Score=59.93  Aligned_cols=74  Identities=23%  Similarity=0.307  Sum_probs=46.4

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC--Cee--eEEeee---e-cCCceEEEcc---C--CeEEEeecCcCCC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ--GEE--LFVDMT---E-STDGKYLVLP---S--GELHIRDVGPEDG  140 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~--~~~--l~~~~~---~-~~~~r~~~~~---~--g~L~I~~v~~~D~  140 (167)
                      +..+.+|++|.|+|.....  .....+.|+|..  +.+  +.....   + ...+|+.+..   +  ..|.|++++.+|+
T Consensus         8 ~v~~~~G~~Vtl~C~~~~~--~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1fo0a_           8 SISVMEKTTVTMDCVYETQ--DSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDS   85 (115)
T ss_dssp             EEEEETTCCEEECCEECCC--CSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             EEEEcCCCCEEEEEEEcCC--CCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCcccc
Confidence            4578899999999987542  234468998732  111  111110   0 0113444432   2  2599999999999


Q ss_pred             CcceEEEeee
Q psy12724        141 YKSYQCRTKH  150 (167)
Q Consensus       141 ~G~Y~C~a~n  150 (167)
                       |.|.|.+..
T Consensus        86 -a~YyCa~~~   94 (115)
T d1fo0a_          86 -AVYFCAMRG   94 (115)
T ss_dssp             -EEEEEEEEC
T ss_pred             -ccccceeec
Confidence             999998764

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.9e-07  Score=59.70  Aligned_cols=34  Identities=12%  Similarity=0.374  Sum_probs=29.6

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      .|.++.|.+|+++.|.|.+.+.|.+   .+.|+|++.
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p---~v~W~k~g~   35 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEP---DIQWVKDGA   35 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSC---CEEEEETTE
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCc---eEEEEEeec
Confidence            4789999999999999999988764   799999853

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.40  E-value=6.4e-08  Score=62.24  Aligned_cols=37  Identities=19%  Similarity=0.329  Sum_probs=32.4

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      |...|+++.|.+|+++.|.|.+.+.|.+   .+.|++++.
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p---~v~W~~~g~   38 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVP---TVTWLRKGQ   38 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCC---CCEEESSSS
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCC---eEEEEEeec
Confidence            5668899999999999999999998764   799999864

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=9.1e-08  Score=61.12  Aligned_cols=57  Identities=4%  Similarity=-0.147  Sum_probs=43.6

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE----EEeeeEEEecCeE
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV----VSQSYTVNIMDEH   76 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v----~~g~y~c~~~~~~   76 (167)
                      .|.+..+.+|+.+.|.|.|.|.|.+   .++|+|++. .+.+......    .+|.|+|.+.|..
T Consensus        10 ~p~~~~~~~G~~~~l~C~a~G~P~P---~v~W~k~g~-~~~~~~~~~~v~~~d~G~Y~C~A~N~~   70 (84)
T d2oz4a3          10 CPGNWTWPENSQQTPMCQAWGNPLP---ELKCLKDGT-FPLPIGESVTVTRDLEGTYLCRARSTQ   70 (84)
T ss_dssp             SCSEEEEETTCEECCCCCCEEESCC---EEEEEETTT-EECCTTSCEECCGGGCEEEEEEEEETT
T ss_pred             CCccEEEeCCCEEEEEEEEeEcCcc---EEEEEEeec-cceeeeeeeccccCCCCEEEEEEEcCC
Confidence            3678899999999999999998864   899999865 4444333222    3799999998753

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.39  E-value=7.8e-07  Score=59.56  Aligned_cols=86  Identities=15%  Similarity=0.197  Sum_probs=51.3

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeC--CCeee--EEee---eecCCceEEEccC---CeEEEeecCcCCCCcc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISD--QGEEL--FVDM---TESTDGKYLVLPS---GELHIRDVGPEDGYKS  143 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~--~~~~l--~~~~---~~~~~~r~~~~~~---g~L~I~~v~~~D~~G~  143 (167)
                      ...+.+|++|+|+|...+..-.....+.|+|.  +..+.  .-..   .+...+||....+   ..|.|++++.+|+ |.
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Ds-a~   87 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDE-AI   87 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGC-EE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCcccc-Ee
Confidence            35677999999999986321111223789872  21221  1100   0112356654432   2699999999999 99


Q ss_pred             eEEEeeecC----cceEEEee
Q psy12724        144 YQCRTKHRL----TGETRLSA  160 (167)
Q Consensus       144 Y~C~a~n~~----~~~~~l~~  160 (167)
                      |-|.+....    ..-|+|+|
T Consensus        88 YyCa~~~~~~~~FG~GT~LtV  108 (110)
T d1oaql_          88 YFCALWYSNHLVFGGGTKLTV  108 (110)
T ss_dssp             EEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEcccCCCCEECCCeEEEE
Confidence            999877543    33445544

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.39  E-value=1.5e-06  Score=58.05  Aligned_cols=86  Identities=22%  Similarity=0.358  Sum_probs=52.2

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeC--CCeee--EEee---eecCCceEEEc--cC--CeEEEeecCcCCCC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISD--QGEEL--FVDM---TESTDGKYLVL--PS--GELHIRDVGPEDGY  141 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~--~~~~l--~~~~---~~~~~~r~~~~--~~--g~L~I~~v~~~D~~  141 (167)
                      ....+.+|++|.|.|.....    ...+.|+|.  +..+.  ....   .+....+....  .+  ..|.|++++.+|+ 
T Consensus         9 ~~~~v~~G~~vtl~C~~~~~----~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds-   83 (113)
T d1h5ba_           9 SALSLHEGTDSALRCNFTTT----MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDS-   83 (113)
T ss_dssp             SEEEEETTCCEEEEEEESSC----CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGC-
T ss_pred             CEEEEcCCCCEEEEEEEecC----CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHC-
Confidence            34577899999999997632    235799883  21221  1111   01111111111  11  1599999999999 


Q ss_pred             cceEEEeeecC-------cceEEEeeeCC
Q psy12724        142 KSYQCRTKHRL-------TGETRLSATKG  163 (167)
Q Consensus       142 G~Y~C~a~n~~-------~~~~~l~~~~~  163 (167)
                      |.|.|.+....       ..-|+|+|.|.
T Consensus        84 a~YyCa~~~~~~~~~~~FG~GT~L~V~p~  112 (113)
T d1h5ba_          84 GTYFCAAEASSGSWQLIFGSGTQLTVMPV  112 (113)
T ss_dssp             EEEEEEEECSSSSSSCEECCCEEEEEECC
T ss_pred             EEEEEEecCCCCCCeeEECcCEEEEEEeC
Confidence            99999876432       44577877764

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.39  E-value=8.8e-07  Score=59.39  Aligned_cols=85  Identities=16%  Similarity=0.196  Sum_probs=51.7

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ce--e-eEEeee----ecCCceEEEc--c-CC--eEEEeecCcCCC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GE--E-LFVDMT----ESTDGKYLVL--P-SG--ELHIRDVGPEDG  140 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~--~-l~~~~~----~~~~~r~~~~--~-~g--~L~I~~v~~~D~  140 (167)
                      ...+.+|++|+|.|.....   ..+.+.|+|.. +.  . |.....    .....++...  . +.  .|.|++++++|+
T Consensus         9 ~v~~~~G~~vtl~C~~s~~---~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1j8hd1           9 HVSVSEGALVLLRCNYSSS---VPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDA   85 (115)
T ss_dssp             EEEEETTSCEEECCEEECS---SCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGC
T ss_pred             eEEEcCCCCEEEEEEeCCC---CceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCC
Confidence            3567899999999998532   33468998732 11  1 211110    0112233332  1 11  599999999999


Q ss_pred             CcceEEEeeecC--------cceEEEeeeC
Q psy12724        141 YKSYQCRTKHRL--------TGETRLSATK  162 (167)
Q Consensus       141 ~G~Y~C~a~n~~--------~~~~~l~~~~  162 (167)
                       |.|.|.+....        ..-|+|+|.|
T Consensus        86 -a~YyCa~~~~~~~~~~~~FG~GT~L~V~p  114 (115)
T d1j8hd1          86 -AEYFCAVSESPFGNEKLTFGTGTRLTIIP  114 (115)
T ss_dssp             -EEEEEEEESSTTSCSCEEECCCEEEEEEC
T ss_pred             -ccceeeecCCCCCCcccEECCCEEEEEEe
Confidence             99999987542        3345666654

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.39  E-value=7.2e-07  Score=59.47  Aligned_cols=85  Identities=24%  Similarity=0.370  Sum_probs=52.3

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeC--CCee--eEEeee---ecCCceEEEc--cC---CeEEEeecCcCCCC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISD--QGEE--LFVDMT---ESTDGKYLVL--PS---GELHIRDVGPEDGY  141 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~--~~~~--l~~~~~---~~~~~r~~~~--~~---g~L~I~~v~~~D~~  141 (167)
                      ...+.+|++|+|.|.....   ..+.+.|++.  +..+  +.....   +...+|+...  ..   -.|.|++++.+|+ 
T Consensus         9 s~~~~~G~svtl~C~~s~~---~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds-   84 (111)
T d1bd2d1           9 SLSVQEGRISILNCDYTNS---MFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDS-   84 (111)
T ss_dssp             EEEEETTSCEEEEEEECCT---TCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGC-
T ss_pred             EEEEcCCCCEEEEEEeCCC---CCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCccccc-
Confidence            3567899999999987643   3446789873  2112  111110   0112344332  11   2699999999999 


Q ss_pred             cceEEEeeecC-----cceEEEeeeC
Q psy12724        142 KSYQCRTKHRL-----TGETRLSATK  162 (167)
Q Consensus       142 G~Y~C~a~n~~-----~~~~~l~~~~  162 (167)
                      |.|.|.+....     ..-|+|+|.|
T Consensus        85 a~YyCa~~~~~~~~~FG~GT~LtV~p  110 (111)
T d1bd2d1          85 AVYFCAAMEGAQKLVFGQGTRLTINP  110 (111)
T ss_dssp             EEEEEEEESSTTCEEECCCEEEEEEC
T ss_pred             EEEEeeccCCCCCcEeCCCEEEEEEc
Confidence            99999776322     4456777655

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.39  E-value=5.9e-07  Score=59.85  Aligned_cols=74  Identities=18%  Similarity=0.385  Sum_probs=47.7

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ce-e--eEEee--e-ecCCceEEEccCC---eEEEeecCcCCCCcc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GE-E--LFVDM--T-ESTDGKYLVLPSG---ELHIRDVGPEDGYKS  143 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~-~--l~~~~--~-~~~~~r~~~~~~g---~L~I~~v~~~D~~G~  143 (167)
                      ...+.+|++|.|.|...+.   ....+.|+|.. +. +  +....  . .....|+....++   .|.|++++++|+ |.
T Consensus        12 ~l~~~~G~svtL~C~~s~~---~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Ds-a~   87 (109)
T d1bwwa_          12 SLSASVGDRVTITCQASQD---IIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDI-AT   87 (109)
T ss_dssp             EEEECTTCCEEEEEEESSC---CTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-EE
T ss_pred             EEEECCCCCEEEEEEecCC---CCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcC-ce
Confidence            3567789999999998643   23457998732 11 1  11100  0 1123456554333   699999999999 99


Q ss_pred             eEEEeeec
Q psy12724        144 YQCRTKHR  151 (167)
Q Consensus       144 Y~C~a~n~  151 (167)
                      |.|.+...
T Consensus        88 YyCA~~~~   95 (109)
T d1bwwa_          88 YYCQQYQS   95 (109)
T ss_dssp             EEEEECSS
T ss_pred             EEEeecCC
Confidence            99987653

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.39  E-value=6.6e-06  Score=55.12  Aligned_cols=33  Identities=30%  Similarity=0.409  Sum_probs=26.1

Q ss_pred             eEEEeecCcCCCCcceEEEeeecC-----cceEEEeeeC
Q psy12724        129 ELHIRDVGPEDGYKSYQCRTKHRL-----TGETRLSATK  162 (167)
Q Consensus       129 ~L~I~~v~~~D~~G~Y~C~a~n~~-----~~~~~l~~~~  162 (167)
                      .|.|++++.+|+ |.|.|.+....     ..-|+|+|.|
T Consensus        72 ~L~I~~~~~~Ds-a~YyCa~~~~~~~~~FG~GT~LtV~~  109 (115)
T d1ogad1          72 SLHITAAQPGDT-GLYLCAGAGSQGNLIFGKGTKLSVKP  109 (115)
T ss_dssp             EEEESSCCGGGC-EEEEEEEECTTSSEEECCCEEEEEEC
T ss_pred             eeeecCCCccce-eeEcccccCCCCCcEECCCEEEEEec
Confidence            699999999999 99999876432     4556777765

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.38  E-value=6.3e-07  Score=59.63  Aligned_cols=75  Identities=17%  Similarity=0.251  Sum_probs=48.4

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEeee---ecCCceEEEccC---CeEEEeecCcCCCCc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDMT---ESTDGKYLVLPS---GELHIRDVGPEDGYK  142 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~~---~~~~~r~~~~~~---g~L~I~~v~~~D~~G  142 (167)
                      .+..+.+|++|+|.|.....   ....+.|+|.. +..   +.....   +...+||....+   -.|.|++++.+|+ |
T Consensus         9 ~sl~~~~G~svtl~C~~s~~---~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Ds-a   84 (107)
T d1d5il1           9 SSMYASLGERVTITCKASQD---INSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDM-G   84 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSC---CTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC-E
T ss_pred             CEEEECCCCCEEEEEEcCCC---CCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCC-E
Confidence            34567889999999998643   34567998742 111   111000   112346655433   3699999999999 9


Q ss_pred             ceEEEeeec
Q psy12724        143 SYQCRTKHR  151 (167)
Q Consensus       143 ~Y~C~a~n~  151 (167)
                      .|.|.+.+.
T Consensus        85 ~YyCa~~~~   93 (107)
T d1d5il1          85 IYYCLQYDE   93 (107)
T ss_dssp             EEEEEECSS
T ss_pred             EEEeeeccC
Confidence            999987654

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.38  E-value=3.8e-07  Score=61.25  Aligned_cols=74  Identities=20%  Similarity=0.330  Sum_probs=47.8

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeC--CCeeeEEeeeecCCceEEEcc---CC--eEEEeecCcCCCCcceE
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISD--QGEELFVDMTESTDGKYLVLP---SG--ELHIRDVGPEDGYKSYQ  145 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~--~~~~l~~~~~~~~~~r~~~~~---~g--~L~I~~v~~~D~~G~Y~  145 (167)
                      ....+.+|++|.|.|...+. ......+.|+|.  +..+... +  ...+|+....   ..  .|.|++++.+|+ |.|.
T Consensus         8 ~s~~~~~G~svtL~C~~s~~-~~~~~~~~Wyrq~~g~~~~~~-~--~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds-a~Yy   82 (113)
T d1vesa_           8 RTATKETGESLTINCVLRDA-SFELKDTGWYRTKLGSTNEQS-I--SIGGRYVETVNKGSKSFSLRISDLRVEDS-GTYK   82 (113)
T ss_dssp             SEEEECTTCCEEEEEEEESC-SSCCCEEEEEEEETTCCCCEE-C--CCBTTEEEEEETTTTEEEEEECSCCGGGC-EEEE
T ss_pred             CEEEEcCCCCEEEEEEECCC-cccCCccceeeeeccccceee-e--eecccccceeECCCCceeeeecccccCCc-ceEe
Confidence            34567799999999988532 113456899873  2111111 1  1245554432   12  699999999999 9999


Q ss_pred             EEeeec
Q psy12724        146 CRTKHR  151 (167)
Q Consensus       146 C~a~n~  151 (167)
                      |.+...
T Consensus        83 Ca~~~~   88 (113)
T d1vesa_          83 CQAFYS   88 (113)
T ss_dssp             EEEEEE
T ss_pred             eeeecc
Confidence            998654

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.38  E-value=6.4e-07  Score=59.61  Aligned_cols=73  Identities=18%  Similarity=0.254  Sum_probs=47.0

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC--Cee--eEEee---eecCCceEEEccC---CeEEEeecCcCCCCcce
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ--GEE--LFVDM---TESTDGKYLVLPS---GELHIRDVGPEDGYKSY  144 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~--~~~--l~~~~---~~~~~~r~~~~~~---g~L~I~~v~~~D~~G~Y  144 (167)
                      ..+.+|++|+|.|.....   ....+.|+|..  ..+  |....   .+....||....+   ..|.|++++++|+ |.|
T Consensus        11 l~~~~G~svtl~C~~s~~---~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds-A~Y   86 (107)
T d1mexl1          11 MSTSLGNRVSVTCKASQN---VGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDL-AEY   86 (107)
T ss_dssp             EEECTTSCEEEEEEESSC---CTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC-SEE
T ss_pred             EEECCCCCEEEEEEeCCC---CCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecc-eeE
Confidence            467789999999997543   23357999732  111  11100   1112356655432   3699999999999 999


Q ss_pred             EEEeeec
Q psy12724        145 QCRTKHR  151 (167)
Q Consensus       145 ~C~a~n~  151 (167)
                      .|.+...
T Consensus        87 yCa~~~~   93 (107)
T d1mexl1          87 FCQQYNS   93 (107)
T ss_dssp             EEEECSS
T ss_pred             EEeECCC
Confidence            9986543

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.38  E-value=7e-07  Score=59.27  Aligned_cols=75  Identities=16%  Similarity=0.308  Sum_probs=47.8

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ce--e-eEEee--ee-cCCceEEEccCC---eEEEeecCcCCCCc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GE--E-LFVDM--TE-STDGKYLVLPSG---ELHIRDVGPEDGYK  142 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~--~-l~~~~--~~-~~~~r~~~~~~g---~L~I~~v~~~D~~G  142 (167)
                      ....+.+|++|.|.|.....   -...+.|+|.. +.  . +....  .+ ....|+....++   .|.|++++++|+ |
T Consensus         8 ~sl~~~~G~svtL~C~~~~~---~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds-a   83 (106)
T d1op3k1           8 STLSASVGDTITITCRASQS---IETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDF-A   83 (106)
T ss_dssp             SEEEECTTCEEEEEEEESSC---CTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGC-S
T ss_pred             CeEEECCCCCEEEEEEeCCC---CCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCC-C
Confidence            34567899999999988643   23357998742 11  1 11100  01 122456554322   599999999999 9


Q ss_pred             ceEEEeeec
Q psy12724        143 SYQCRTKHR  151 (167)
Q Consensus       143 ~Y~C~a~n~  151 (167)
                      .|.|.+...
T Consensus        84 ~YyCa~~~~   92 (106)
T d1op3k1          84 TYHCQHYAG   92 (106)
T ss_dssp             EEEEEEECS
T ss_pred             cEeeeeCCC
Confidence            999987653

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.38  E-value=7.8e-07  Score=58.99  Aligned_cols=74  Identities=16%  Similarity=0.284  Sum_probs=47.2

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ce-ee--EEee---eecCCceEEEcc---CCeEEEeecCcCCCCcc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GE-EL--FVDM---TESTDGKYLVLP---SGELHIRDVGPEDGYKS  143 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~-~l--~~~~---~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~  143 (167)
                      ...+.+|++|+|.|.....   ....+.|+|.. +. +.  ....   ......|+....   +..|.|++++.+|+ |.
T Consensus        10 ~l~v~~G~svtl~C~~s~~---~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DS-a~   85 (107)
T d1kcvl1          10 SMGMSVGEAVTLNCKASEN---VGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDD-AD   85 (107)
T ss_dssp             EEEEETTCCEEEEEEESSC---CTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-EE
T ss_pred             EEeECCCCCEEEEEEecCC---cCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCC-ce
Confidence            3567889999999998643   33458999732 11 11  1100   001234554442   23699999999999 99


Q ss_pred             eEEEeeec
Q psy12724        144 YQCRTKHR  151 (167)
Q Consensus       144 Y~C~a~n~  151 (167)
                      |.|.+...
T Consensus        86 YyCa~~~~   93 (107)
T d1kcvl1          86 YYCGQSYS   93 (107)
T ss_dssp             EEEEECSS
T ss_pred             EEEEecCC
Confidence            99987643

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.36  E-value=6.3e-07  Score=59.06  Aligned_cols=74  Identities=19%  Similarity=0.306  Sum_probs=46.8

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC--CeeeEEee-----eecCCceEEEccC---CeEEEeecCcCCCCcc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ--GEELFVDM-----TESTDGKYLVLPS---GELHIRDVGPEDGYKS  143 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~--~~~l~~~~-----~~~~~~r~~~~~~---g~L~I~~v~~~D~~G~  143 (167)
                      ...+.+|++|+|.|.....   ....+.|+|..  ..+..-..     ......++....+   -.|.|.+++++|+ |.
T Consensus         7 sl~~~~G~svtl~C~~~~~---~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds-a~   82 (103)
T d8faba1           7 SVSVSPGQTARITCSANAL---PNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDE-AD   82 (103)
T ss_dssp             EEEECTTSCEEEEEECTTG---GGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGC-EE
T ss_pred             eEEECCCCCEEEEEEeCCC---CCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHC-ce
Confidence            4567889999999998643   34467998742  11111000     0011234443322   3699999999999 99


Q ss_pred             eEEEeeec
Q psy12724        144 YQCRTKHR  151 (167)
Q Consensus       144 Y~C~a~n~  151 (167)
                      |-|.+.+.
T Consensus        83 YyCA~~~~   90 (103)
T d8faba1          83 YYCQAWDN   90 (103)
T ss_dssp             EEEEEEET
T ss_pred             EEeeecCC
Confidence            99977654

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.36  E-value=9.7e-07  Score=59.46  Aligned_cols=86  Identities=16%  Similarity=0.249  Sum_probs=52.6

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-ee--eEEee----eecCCceEEEccC---CeEEEeecCcCCCCcc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-EE--LFVDM----TESTDGKYLVLPS---GELHIRDVGPEDGYKS  143 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~~--l~~~~----~~~~~~r~~~~~~---g~L~I~~v~~~D~~G~  143 (167)
                      ...+.+|++|+|.|.+.+.. -....+.|+|... ..  +.-..    .+...+|+....+   -.|.|.+++.+|+ +.
T Consensus         9 s~~v~~G~svtL~C~~s~~~-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Ds-A~   86 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATD-IGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDE-AD   86 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTT-TTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGC-EE
T ss_pred             cEEeCCCCCEEEEEEECCcc-ccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccC-ce
Confidence            35677899999999986431 1234679997431 11  11111    0112345555432   3699999999999 99


Q ss_pred             eEEEeeecC------cceEEEeee
Q psy12724        144 YQCRTKHRL------TGETRLSAT  161 (167)
Q Consensus       144 Y~C~a~n~~------~~~~~l~~~  161 (167)
                      |.|.+....      ..-|+|+|.
T Consensus        87 YyCA~~~~~~~~~~FG~GT~LtVl  110 (114)
T d2rhea_          87 YYCAAWNDSLDEPGFGGGTKLTVL  110 (114)
T ss_dssp             EEEEEEETTTTEEEECCCEEEEEC
T ss_pred             EEEeecCCCCCCCEECCCeEEEEC
Confidence            999876432      344555553

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.35  E-value=1.5e-06  Score=57.87  Aligned_cols=84  Identities=20%  Similarity=0.312  Sum_probs=52.4

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ce-e--eEEee-------eecCCceEEEccC----CeEEEeecCc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GE-E--LFVDM-------TESTDGKYLVLPS----GELHIRDVGP  137 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~-~--l~~~~-------~~~~~~r~~~~~~----g~L~I~~v~~  137 (167)
                      ....+.+|++|+|.|...+    -...+.|+|.. +. +  |....       .+...+|+.....    ..|.|.+++.
T Consensus         7 ~~~~~~~G~svtl~C~~~~----~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~   82 (111)
T d2esve1           7 SHSVIEKGQTVTLRCDPIS----GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAEL   82 (111)
T ss_dssp             SEEEEETTCCEEEEEECCT----TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCG
T ss_pred             CEEEECCCCCEEEEEEECC----CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCccc
Confidence            3457789999999998643    23468998742 11 1  11100       0112355655432    2699999999


Q ss_pred             CCCCcceEEEeeecC-----cceEEEeee
Q psy12724        138 EDGYKSYQCRTKHRL-----TGETRLSAT  161 (167)
Q Consensus       138 ~D~~G~Y~C~a~n~~-----~~~~~l~~~  161 (167)
                      +|+ |.|.|.+....     ..-|+|+|+
T Consensus        83 ~Ds-a~YyCa~~~~~~~~~FG~GT~LtVl  110 (111)
T d2esve1          83 EDS-GVYFCASSQDRDTQYFGPGTRLTVL  110 (111)
T ss_dssp             GGC-EEEEEEEESSSSSCEECCCEEEEEE
T ss_pred             CCC-ceEEEeeeCCCCccEECCCeEEEEe
Confidence            999 99999765322     445666654

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.35  E-value=1.1e-06  Score=58.53  Aligned_cols=83  Identities=20%  Similarity=0.368  Sum_probs=51.0

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ce-e--eEEee--e-ecCCceEEEccCC---eEEEeecCcCCCCcc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GE-E--LFVDM--T-ESTDGKYLVLPSG---ELHIRDVGPEDGYKS  143 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~-~--l~~~~--~-~~~~~r~~~~~~g---~L~I~~v~~~D~~G~  143 (167)
                      ...+.+|++|.|.|.....   ....+.|+|.. +. +  +....  . .....++....++   .|.|.+++.+|+ |.
T Consensus        10 ~l~~~~G~svtL~C~~s~~---~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds-a~   85 (108)
T d1jhll_          10 YLVASPGETITINCRASKS---ISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDF-AM   85 (108)
T ss_dssp             EEEECTTSCEEEEEEESSC---CTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCC-SE
T ss_pred             eEEecCCCCEEEEEEccCC---cCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccc-eE
Confidence            3467789999999998642   34458998742 11 1  11100  0 0112344444444   699999999999 99


Q ss_pred             eEEEeeecC----cceEEEee
Q psy12724        144 YQCRTKHRL----TGETRLSA  160 (167)
Q Consensus       144 Y~C~a~n~~----~~~~~l~~  160 (167)
                      |.|.+.+..    ..-|+|+|
T Consensus        86 YyCA~~~~~~~~FG~GT~LtV  106 (108)
T d1jhll_          86 YICQQHNEYPWTFGGGTKLEI  106 (108)
T ss_dssp             EEEEECSSSSCEECCCEEEEE
T ss_pred             EEEeeCCCcccEECCCeEEEE
Confidence            999766543    33445544

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.35  E-value=2.9e-07  Score=58.40  Aligned_cols=59  Identities=12%  Similarity=0.119  Sum_probs=41.5

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE-------EEeeeEEEecC
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV-------VSQSYTVNIMD   74 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v-------~~g~y~c~~~~   74 (167)
                      ...+|.+..|.+|+++.|.|.+.+.+.+  ..+.|+|+ +..+..+.....       .+|.|+|++.+
T Consensus         8 i~~~P~~~~v~~G~~vtL~C~~~~~~~~--~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~~   73 (84)
T d1fnla1           8 VFLEPQWYSVLEKDSVTLKCQGAYSPED--NSTQWFHN-ESLISSQASSYFIDAATVNDSGEYRCQTNL   73 (84)
T ss_dssp             EEEESCCSEEETTCCEEEEEECCCBTTB--CCCEEEET-TEEEESSCSEEEESSCCGGGCEEEEEECSS
T ss_pred             EEECCCCcEEeCCCeEEEEEEeccCCCC--eEEEEeee-ceeeeecceeeEecCCcccCCEEEEEEccC
Confidence            4577888999999999999999988764  23555665 444443332222       27999998764

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=1.4e-06  Score=59.15  Aligned_cols=78  Identities=12%  Similarity=0.192  Sum_probs=48.7

Q ss_pred             EEEecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeC--CCee-----eEEeee-------e---cCCceEEEc-cCC--
Q psy12724         69 TVNIMDEHVLKGNSAVLKCHIPSFVADYVAVESWISD--QGEE-----LFVDMT-------E---STDGKYLVL-PSG--  128 (167)
Q Consensus        69 ~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~--~~~~-----l~~~~~-------~---~~~~r~~~~-~~g--  128 (167)
                      .-.+++..+.+|++|.|.|.+.+.   ..+.+.|+|-  +...     +.-...       .   ....|+... .++  
T Consensus         5 ~~~P~~~~~~~G~~vtL~C~~~~~---~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~   81 (122)
T d1nezg_           5 RIFPKKMDAELGQKVDLVCEVLGS---VSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNK   81 (122)
T ss_dssp             EEESSCEEECTTCCEEEEEEEESC---CSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTE
T ss_pred             EEcCCEEEECCCCCEEEEEEEcCc---cCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCE
Confidence            444566778899999999998643   4556899872  1111     110000       0   001234332 222  


Q ss_pred             -eEEEeecCcCCCCcceEEEeee
Q psy12724        129 -ELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus       129 -~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                       .|.|++++.+|+ |.|.|.+.-
T Consensus        82 ~~L~I~~~~~~Ds-g~YyCa~~~  103 (122)
T d1nezg_          82 YVLTLNKFSKENE-GYYFCSVIS  103 (122)
T ss_dssp             EEEEESSCCGGGC-EEEEEEEEE
T ss_pred             eEEEEcccccCCC-EEEEeeEeC
Confidence             599999999999 999998753

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.35  E-value=7.2e-07  Score=59.64  Aligned_cols=75  Identities=19%  Similarity=0.296  Sum_probs=47.4

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeEEee------eecCCceEEEccCC---eEEEeecCcCCCCcc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELFVDM------TESTDGKYLVLPSG---ELHIRDVGPEDGYKS  143 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~~~~------~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~  143 (167)
                      ...+.+|++|+|.|.....   ....+.|+|.. +......+      .+....++....++   .|.|++++.+|+ |.
T Consensus         9 sl~~~~G~svtl~C~~~~~---~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds-av   84 (109)
T d1w72l1           9 SVSVAPGQTARITCGGNNI---GSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDE-AD   84 (109)
T ss_dssp             EEEECTTSCEEEEEECTTG---GGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC-EE
T ss_pred             eEEECCCCCEEEEEEcCCC---CCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCC-EE
Confidence            3567789999999997643   23457998642 11111111      01112345443333   699999999999 99


Q ss_pred             eEEEeeecC
Q psy12724        144 YQCRTKHRL  152 (167)
Q Consensus       144 Y~C~a~n~~  152 (167)
                      |-|.+....
T Consensus        85 YyCA~~~~~   93 (109)
T d1w72l1          85 YYCQVWDSR   93 (109)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEecCCC
Confidence            999886544

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.34  E-value=1.2e-06  Score=58.78  Aligned_cols=73  Identities=25%  Similarity=0.419  Sum_probs=46.7

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeEEeeeecCCceEEEcc-C--C--eEEEeecCcCCCCcceEEEe
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELFVDMTESTDGKYLVLP-S--G--ELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~~~~~~~~~~r~~~~~-~--g--~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      ..+.+|++|+|.|...+. .-....+.|+|.. +......+  ..++|+.... +  .  .|.|++++.+|+ |.|.|.+
T Consensus         9 ~t~~~G~svtl~C~~s~~-s~~~~~i~WYrq~~g~~~~~~~--~~~gr~~~~~~~~~~~~~L~I~~l~~~Ds-a~YyCA~   84 (112)
T d1sq2n_           9 VTKETGESLTINCVLRDA-SYALGSTCWYRKKSGEGNEESI--SKGGRYVETVNSGSKSFSLRINDLTVEDG-GTYRCGL   84 (112)
T ss_dssp             EEECTTCCEEEEEEECSC-SSCCCCEEEEEEETTSCCCEEC--CCBTTEEEEEETTTTEEEEEECSCCGGGC-EEEEEEE
T ss_pred             EEEcCCCCEEEEEEECCC-cccCCceEEEEeeccceeeeee--ccCCcEeeEEecCCceeeeEecCCcCccC-EEEeEEE
Confidence            456789999999987532 1134578999732 11111111  1345664432 1  2  699999999999 9999987


Q ss_pred             eec
Q psy12724        149 KHR  151 (167)
Q Consensus       149 ~n~  151 (167)
                      ...
T Consensus        85 ~~~   87 (112)
T d1sq2n_          85 GVA   87 (112)
T ss_dssp             CBT
T ss_pred             ecC
Confidence            643

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.34  E-value=9e-07  Score=59.08  Aligned_cols=84  Identities=23%  Similarity=0.403  Sum_probs=52.0

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ce-e--eEEe---eeecCCceEEEccCC---eEEEeecCcCCCCc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GE-E--LFVD---MTESTDGKYLVLPSG---ELHIRDVGPEDGYK  142 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~-~--l~~~---~~~~~~~r~~~~~~g---~L~I~~v~~~D~~G  142 (167)
                      ....+.+|++|.|.|.....   ....+.|+|.. +. +  +...   ..+....|+....++   .|.|++++++|+ |
T Consensus         9 ~~l~~~~G~svtL~C~~s~~---~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DS-a   84 (109)
T d1mqkl_           9 VSLSASVGETVTITCRASEN---IYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDF-G   84 (109)
T ss_dssp             SEEEECTTCCEEEEEEESSC---CTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-E
T ss_pred             CEEEECCCCCEEEEEEeCCC---cCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCC-e
Confidence            34567789999999998632   34458999832 11 1  1110   001123456554332   699999999999 9


Q ss_pred             ceEEEeeecC-----cceEEEee
Q psy12724        143 SYQCRTKHRL-----TGETRLSA  160 (167)
Q Consensus       143 ~Y~C~a~n~~-----~~~~~l~~  160 (167)
                      .|.|.+....     ..-|+|+|
T Consensus        85 ~YyCA~~~~~~~~~FG~GT~LtV  107 (109)
T d1mqkl_          85 SYYCQHHYGTPPLTFGGGTKLEI  107 (109)
T ss_dssp             EEEEEECSSSSSCCBCCCEEEEE
T ss_pred             eEEEeeeCCCCCcEECCCEEEEE
Confidence            9999876422     34455554

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.33  E-value=1.4e-06  Score=58.01  Aligned_cols=84  Identities=15%  Similarity=0.210  Sum_probs=51.1

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ce-e--eEEeee---ecCCceEEEc--cC---CeEEEeecCcCCCCc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GE-E--LFVDMT---ESTDGKYLVL--PS---GELHIRDVGPEDGYK  142 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~-~--l~~~~~---~~~~~r~~~~--~~---g~L~I~~v~~~D~~G  142 (167)
                      ..+.+|++|.|.|..+..   -...+.|+|.. +. +  |.....   .....++...  .+   -.|.|++++++|+ |
T Consensus        10 ~~~~~G~~vtl~C~~~~~---~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Ds-a   85 (110)
T d1ac6a_          10 VALSEEDFLTIHCNYSAS---GYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDS-A   85 (110)
T ss_dssp             EEEETTEEEEECEEEECS---SCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGC-E
T ss_pred             EEECCCCCEEEEEEecCC---CCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCC-c
Confidence            467889999999987532   23468998832 11 1  111110   0112345432  22   2699999999999 9


Q ss_pred             ceEEEeeecC-----cceEEEeeeC
Q psy12724        143 SYQCRTKHRL-----TGETRLSATK  162 (167)
Q Consensus       143 ~Y~C~a~n~~-----~~~~~l~~~~  162 (167)
                      .|.|.+....     ..-|+|+|.|
T Consensus        86 ~YyCA~~~~~~~~~FG~GT~L~V~P  110 (110)
T d1ac6a_          86 VYYCALSGGNNKLTFGAGTKLTIKP  110 (110)
T ss_dssp             EEEEEEEETTTEEEECCCEEEEEEC
T ss_pred             ccceeecCCCCCcEECCCeEEEEEC
Confidence            9999876543     3445565543

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.33  E-value=1.1e-06  Score=58.44  Aligned_cols=76  Identities=21%  Similarity=0.365  Sum_probs=48.1

Q ss_pred             ecCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEee---eecCCceEEEccCC---eEEEeecCcCCCC
Q psy12724         72 IMDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDM---TESTDGKYLVLPSG---ELHIRDVGPEDGY  141 (167)
Q Consensus        72 ~~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~---~~~~~~r~~~~~~g---~L~I~~v~~~D~~  141 (167)
                      +.+..+.+|++|+|.|.....   ..+.+.|+|.. +..   |.-..   ......|+....++   .|.|++++++|+ 
T Consensus         8 P~sl~~~~G~svtL~C~~s~~---~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds-   83 (107)
T d1tjgl1           8 PSSLSASVGDRITITCRASQG---VTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDF-   83 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSC---CTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC-
T ss_pred             CCEEEECCCCCEEEEEEECCC---CCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcC-
Confidence            344677899999999998632   23567998732 111   11100   01123455544333   599999999999 


Q ss_pred             cceEEEeeec
Q psy12724        142 KSYQCRTKHR  151 (167)
Q Consensus       142 G~Y~C~a~n~  151 (167)
                      |.|.|.+.+.
T Consensus        84 A~YyCa~~~~   93 (107)
T d1tjgl1          84 ATYYCQQLHF   93 (107)
T ss_dssp             SEEEEEECSB
T ss_pred             ceEEEEECcC
Confidence            9999976543

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.32  E-value=1.1e-06  Score=58.27  Aligned_cols=75  Identities=23%  Similarity=0.389  Sum_probs=46.9

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEee---eecCCceEEEccCC---eEEEeecCcCCCCcc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDM---TESTDGKYLVLPSG---ELHIRDVGPEDGYKS  143 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~---~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~  143 (167)
                      ...+.+|++|.|.|......  ....+.|+|.. +..   |....   .+....|+....++   .|.|++++++|+ |.
T Consensus        10 ~~~v~~G~tv~l~C~~~~~~--~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Ds-a~   86 (108)
T d2fx7l1          10 TQSLSPGERATLSCRASQSV--GNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDF-AV   86 (108)
T ss_dssp             EEEECTTCCEEEEEEESSCC--GGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC-SE
T ss_pred             eEEECCCCCEEEEEEeecCC--CCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheeccc-EE
Confidence            35677899999999875321  23457998742 121   11100   01122355444322   599999999999 99


Q ss_pred             eEEEeeec
Q psy12724        144 YQCRTKHR  151 (167)
Q Consensus       144 Y~C~a~n~  151 (167)
                      |-|.+.+.
T Consensus        87 YyCa~~~~   94 (108)
T d2fx7l1          87 YYCQQYGQ   94 (108)
T ss_dssp             EEEEECSS
T ss_pred             EeeecCCC
Confidence            99987643

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.31  E-value=1.2e-06  Score=58.33  Aligned_cols=86  Identities=20%  Similarity=0.287  Sum_probs=51.9

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee-eEEee-----eecCCceEEEcc---C--CeEEEeecCcCCC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE-LFVDM-----TESTDGKYLVLP---S--GELHIRDVGPEDG  140 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~-l~~~~-----~~~~~~r~~~~~---~--g~L~I~~v~~~D~  140 (167)
                      ...++.+|++|+|.|...+. .-...-+.|+|.. +.. ..-..     .....+|+....   +  ..|.|++++.+|+
T Consensus         8 ~s~sv~~G~svtL~C~~s~~-~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   86 (111)
T d1cd0a_           8 HSVSESPGKTVTISCTRSSG-NIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDE   86 (111)
T ss_dssp             SEEEECTTSCEEEEEEESSS-CGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CeeEECCCCCEEEEEEECCC-CccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccC
Confidence            34567899999999998642 1122347998742 112 11110     011234554432   1  2699999999999


Q ss_pred             CcceEEEeeecC----cceEEEee
Q psy12724        141 YKSYQCRTKHRL----TGETRLSA  160 (167)
Q Consensus       141 ~G~Y~C~a~n~~----~~~~~l~~  160 (167)
                       |.|.|.+.+..    ..-|+|+|
T Consensus        87 -a~YyCA~~~~~~~~FG~GT~L~V  109 (111)
T d1cd0a_          87 -ADYYCQSYDARNVVFGGGTRLTV  109 (111)
T ss_dssp             -EEEEEEEEETTEEEEBCCEEEEE
T ss_pred             -cEEEEeeccCCCCEECCCeEEEE
Confidence             99999876643    33445554

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.6e-06  Score=56.29  Aligned_cols=63  Identities=11%  Similarity=0.217  Sum_probs=44.0

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEee
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTK  149 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~  149 (167)
                      +..|..|++|+|.|..+.    +.....++|++......        +-.......+.|.+++.+|+ |.|+|...
T Consensus        12 ~~~V~~G~~VTL~C~~~~----~~~~f~L~Keg~~~~~~--------~~~~~~~a~F~i~~v~~~~~-G~Y~C~~~   74 (93)
T d1olla2          12 GPEVISGEKVTFYCRLDT----ATSMFLLLKEGRSSHVQ--------RGYGKVQAEFPLGPVTTAHR-GTYRCFGS   74 (93)
T ss_dssp             CSEEETTCEEEEEEECSS----SCSEEEEEEESSSCEEE--------EEECSSEEEEEEEECCGGGC-EEEEEECE
T ss_pred             CCcccCCCcEEEEECCCC----CCCEEEEEECCCcccee--------ecCCCceeEEEecccChhcC-ceEEEEeE
Confidence            457889999999999753    44567888987422211        11011234699999999999 99999754

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.29  E-value=3.2e-06  Score=56.43  Aligned_cols=75  Identities=23%  Similarity=0.417  Sum_probs=46.4

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC----Ceee--EEeee--------ec-CCceEEEc--cC---CeEEEe
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ----GEEL--FVDMT--------ES-TDGKYLVL--PS---GELHIR  133 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~----~~~l--~~~~~--------~~-~~~r~~~~--~~---g~L~I~  133 (167)
                      ...+.+|++|.|.|.+.+.  .....+.|+|..    ...+  .....        +. ...|+...  .+   ..|.|.
T Consensus         7 ~~~v~~G~sv~l~C~~~~~--~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   84 (115)
T d2atpb1           7 SLLVQTNHTAKMSCEVKSI--SKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIM   84 (115)
T ss_dssp             EEEECTTSCEEEEEECCSS--CCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEEC
T ss_pred             cEEEcCCCCEEEEEEEeCC--CCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeec
Confidence            3567899999999998642  234568998731    1111  11110        00 12344332  22   269999


Q ss_pred             ecCcCCCCcceEEEeeec
Q psy12724        134 DVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus       134 ~v~~~D~~G~Y~C~a~n~  151 (167)
                      +++.+|+ |.|.|.+...
T Consensus        85 ~~~~~Ds-g~Y~Ca~~~~  101 (115)
T d2atpb1          85 NVKPEDS-DFYFCATVGS  101 (115)
T ss_dssp             SCCGGGC-EEEEEEEECS
T ss_pred             ccCCCCC-cEEEEeEcCC
Confidence            9999999 9999987543

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.29  E-value=5.9e-07  Score=57.61  Aligned_cols=59  Identities=14%  Similarity=0.086  Sum_probs=40.0

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee--cC-CceE------EEeeeEEEecCe
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI--DN-QDFV------VSQSYTVNIMDE   75 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~--~~-~~~v------~~g~y~c~~~~~   75 (167)
                      ..++....|.+|+++.|+|.+.+.++  .+.+.|+|++. .+..  +. ...+      .+|.|.|.+.+.
T Consensus         6 ilq~p~~~v~eG~~v~L~C~~~~~~p--~~~~~W~kng~-~~~~~~~~~~l~I~~v~~~dsG~Y~C~a~n~   73 (89)
T d1fnla2           6 LLQAPRWVFKEEDPIHLRCHSWKNTA--LHKVTYLQNGK-DRKYFHHNSDFHIPKATLKDSGSYFCRGLVG   73 (89)
T ss_dssp             EEECSCSEEETTCCEEEEEEECTTCC--CEEEEEEETTE-EEEEEEECCCEEESSCCGGGCEEEEEEEEET
T ss_pred             EEECCCCeEccCCeEEEEEEecCCCC--CcEEEEEEccc-ccceeccccccEECccceeccceEEEEEEeC
Confidence            34556677999999999999975543  35899999854 4432  11 1111      279999998653

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.27  E-value=5.9e-07  Score=59.17  Aligned_cols=62  Identities=16%  Similarity=0.311  Sum_probs=40.4

Q ss_pred             eceeeEE-eEEEEEeCCcEEEEeecC-CCCCCcceeeEEeeCCCceeee-cCCc---------eE------EEeeeEEEe
Q psy12724         11 QYYEAQV-YDVFVIKGNAAVFKCNLP-SFVSDHLDVVSWADTDGGQYQI-DNQD---------FV------VSQSYTVNI   72 (167)
Q Consensus        11 ~~~~~~~-~~~~v~~G~~~~l~C~a~-~~~~~~~~~i~W~k~~~~~~~~-~~~~---------~v------~~g~y~c~~   72 (167)
                      +.|..++ +.+.|.+|+++.|.|.+. +.|.   |.+.|+|++...... +..+         .+      .+|.|+|.+
T Consensus         4 ~~F~~~~~~~v~v~eG~~~~l~C~~~~~~p~---~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   80 (105)
T d1cs6a2           4 QEFSAEERDPVKITEGWGVMFTCSPPPHYPA---LSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFA   80 (105)
T ss_dssp             CCCCSSCCCCEEEETTSCEEECCCCCSEESC---CEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEE
T ss_pred             CcccCCCCCCEEEeCCCeEEEEEEccCCCCC---CEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEE
Confidence            3455554 457899999999999984 4443   479999986543222 1111         11      268888888


Q ss_pred             cCe
Q psy12724         73 MDE   75 (167)
Q Consensus        73 ~~~   75 (167)
                      .+.
T Consensus        81 ~N~   83 (105)
T d1cs6a2          81 TSH   83 (105)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            653

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.27  E-value=5.9e-06  Score=54.92  Aligned_cols=72  Identities=17%  Similarity=0.269  Sum_probs=45.3

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC--Cee--eEEeee-------ecCCceEEEcc-C---CeEEEeecCcC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ--GEE--LFVDMT-------ESTDGKYLVLP-S---GELHIRDVGPE  138 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~--~~~--l~~~~~-------~~~~~r~~~~~-~---g~L~I~~v~~~  138 (167)
                      ...+.+|++|.|.|....  +  ...+.|+|..  ..+  +.....       ....+|+.... +   -.|.|++++++
T Consensus         8 ~~~~~~G~svtl~C~~~~--~--~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (112)
T d1kgce1           8 YKVAKRGQDVALRCDPIS--G--HVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQE   83 (112)
T ss_dssp             EEEEETTCCEEEEEECCT--T--CCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGG
T ss_pred             eEEECCCCCEEEEEEECC--C--CCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcC
Confidence            346779999999998642  2  3468998832  111  111110       01234554432 2   26999999999


Q ss_pred             CCCcceEEEeee
Q psy12724        139 DGYKSYQCRTKH  150 (167)
Q Consensus       139 D~~G~Y~C~a~n  150 (167)
                      |+ |.|.|.+.-
T Consensus        84 Ds-a~YyCa~~~   94 (112)
T d1kgce1          84 DS-AVYLCASSL   94 (112)
T ss_dssp             GC-EEEEEEEES
T ss_pred             CC-EEEEEeeeC
Confidence            99 999998753

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.26  E-value=2.4e-06  Score=57.09  Aligned_cols=78  Identities=21%  Similarity=0.309  Sum_probs=47.6

Q ss_pred             cCeEEEeCCcEEEEeeeCCccC-CcceeEEEEeCC--Cee--eEEeee---ecCCceEEEccCC---eEEEeecCcCCCC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVA-DYVAVESWISDQ--GEE--LFVDMT---ESTDGKYLVLPSG---ELHIRDVGPEDGY  141 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~-~p~p~i~W~k~~--~~~--l~~~~~---~~~~~r~~~~~~g---~L~I~~v~~~D~~  141 (167)
                      ....+.+|++|+|.|...+... .....+.|+|..  ..+  +.....   .....|+....++   .|.|++++++|+ 
T Consensus         9 ~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~Ds-   87 (111)
T d2gsia1           9 ASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDA-   87 (111)
T ss_dssp             SEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-
T ss_pred             CEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCC-
Confidence            3456789999999998753211 112347998742  112  111100   0112466554332   699999999999 


Q ss_pred             cceEEEeeec
Q psy12724        142 KSYQCRTKHR  151 (167)
Q Consensus       142 G~Y~C~a~n~  151 (167)
                      |.|.|.+.+.
T Consensus        88 A~YyCa~~~~   97 (111)
T d2gsia1          88 ATYYCSHIRE   97 (111)
T ss_dssp             EEEEEEECSS
T ss_pred             ceEEEEECCC
Confidence            9999976654

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.25  E-value=4e-07  Score=58.23  Aligned_cols=61  Identities=16%  Similarity=0.326  Sum_probs=42.9

Q ss_pred             eeceeeEEeE-EEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc------eE-------EEeeeEEEecCe
Q psy12724         10 SQYYEAQVYD-VFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD------FV-------VSQSYTVNIMDE   75 (167)
Q Consensus        10 ~~~~~~~~~~-~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~------~v-------~~g~y~c~~~~~   75 (167)
                      .+.|...+.+ ..|.+|+++.|.|.+.+.|.+   .+.|+|++. .+.. +..      ..       .+|.|+|.+.|.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p---~v~W~~~~~-~i~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~   76 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP---NVVWSHNAK-PLSG-GRATVTDSGLVIKGVKNGDKGYYGCRATNE   76 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCC---CCEEEETTE-ECCS-SSEEEETTEEEESSCCSTTCEEEEEEEEET
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCC---EEEEEeCCc-cCcc-ccEEEeeeeEEECCCChhhCEEEEEEEEEC
Confidence            3668777765 467889999999999988864   799999854 4422 111      11       168888888764

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.25  E-value=1.6e-06  Score=57.79  Aligned_cols=76  Identities=17%  Similarity=0.327  Sum_probs=48.5

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEee----eecCCceEEEccC---CeEEEeecCcCCCCc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVDM----TESTDGKYLVLPS---GELHIRDVGPEDGYK  142 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~~----~~~~~~r~~~~~~---g~L~I~~v~~~D~~G  142 (167)
                      ....+.+|++|+|.|.....   ....+.|+|.. +..+  .-..    .+.-.+|+....+   ..|.|++++.+|+ |
T Consensus         7 ~s~~~~~G~svtl~C~~~~~---~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Ds-a   82 (108)
T d1nfde1           7 SSASVTVGETVKITCSGDQL---PKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDE-A   82 (108)
T ss_dssp             SEEEEETTSCCCEEEEETTG---GGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGC-S
T ss_pred             CeeEECCCCCEEEEEECCCC---CCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCC-c
Confidence            34567789999999988543   33457998732 2211  1100    0112346655432   2699999999999 9


Q ss_pred             ceEEEeeecC
Q psy12724        143 SYQCRTKHRL  152 (167)
Q Consensus       143 ~Y~C~a~n~~  152 (167)
                      .|.|.+....
T Consensus        83 ~YyCA~~~~~   92 (108)
T d1nfde1          83 AYYCLSSYGD   92 (108)
T ss_dssp             EEEEEEEETT
T ss_pred             eEEEEeecCC
Confidence            9999876433

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.23  E-value=9e-06  Score=54.96  Aligned_cols=86  Identities=17%  Similarity=0.193  Sum_probs=51.5

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC---Cee-eEEee-------eecCCceEEEccC--C---eEEEeecCcC
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ---GEE-LFVDM-------TESTDGKYLVLPS--G---ELHIRDVGPE  138 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~---~~~-l~~~~-------~~~~~~r~~~~~~--g---~L~I~~v~~~  138 (167)
                      ..+.+|++|.|.|.+.+. .--...+.|+|..   +.. |....       .....+|+.+..+  .   .|.|++++.+
T Consensus        11 v~~~~G~svtL~C~~~~~-~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~   89 (120)
T d1ypzf1          11 ISRPRDETAQISCKVFIE-SFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEE   89 (120)
T ss_dssp             EEEETTSCEEEEEEECCG-GGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGG
T ss_pred             EEecCCCcEEEEEEEecc-cccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccccc
Confidence            345679999999998642 1013458998832   111 21100       0112346665432  2   4999999999


Q ss_pred             CCCcceEEEeeecC-------cceEEEeeeC
Q psy12724        139 DGYKSYQCRTKHRL-------TGETRLSATK  162 (167)
Q Consensus       139 D~~G~Y~C~a~n~~-------~~~~~l~~~~  162 (167)
                      |+ |.|.|.+.-..       ..-|+|+|.|
T Consensus        90 Ds-a~YyCA~~~~~~~~~~~FG~GT~LtV~p  119 (120)
T d1ypzf1          90 DE-AIYYCSYGEGSSGFHKVFAEGTKLIVIP  119 (120)
T ss_dssp             GC-SEEEEEECCTTTCCCCEECSCEEEEEEC
T ss_pred             cc-eeEEEEEcCCCCCcccEECCCeEEEEEC
Confidence            99 99999764322       3346666655

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.23  E-value=4.6e-06  Score=56.08  Aligned_cols=73  Identities=22%  Similarity=0.345  Sum_probs=47.7

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee--eEEeee-------e--cCCceEEEcc-C---CeEEEeecCc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE--LFVDMT-------E--STDGKYLVLP-S---GELHIRDVGP  137 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~--l~~~~~-------~--~~~~r~~~~~-~---g~L~I~~v~~  137 (167)
                      ...+.+|++|.|.|...+.   ..+.+.|+|.. +..  +.-...       +  ....|+.+.. +   ..|.|.++++
T Consensus        10 ~~~~~~G~~v~L~C~~~~~---~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~   86 (118)
T d2ij0c1          10 MVIVKSGTSVKIECRSLDT---NIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHP   86 (118)
T ss_dssp             EEEECTTCCEEEEEEECSS---CCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCG
T ss_pred             eEEEcCCCCEEEEEEEcCC---cccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccccccc
Confidence            3567889999999998643   34578999832 111  111100       0  1234666543 2   2599999999


Q ss_pred             CCCCcceEEEeee
Q psy12724        138 EDGYKSYQCRTKH  150 (167)
Q Consensus       138 ~D~~G~Y~C~a~n  150 (167)
                      +|+ |.|.|.+..
T Consensus        87 ~Ds-a~YyCa~~~   98 (118)
T d2ij0c1          87 EDS-GFYVCSALA   98 (118)
T ss_dssp             GGC-EEEEEEEEC
T ss_pred             ccC-ceEEEEEec
Confidence            999 999998854

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.23  E-value=8e-07  Score=56.79  Aligned_cols=57  Identities=14%  Similarity=0.084  Sum_probs=39.0

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC-c-eE-------EEeeeEEEecCe
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ-D-FV-------VSQSYTVNIMDE   75 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~-~-~v-------~~g~y~c~~~~~   75 (167)
                      ++....|.+|+++.|+|.+.+.+.+  +.+.|+|++. .+..... . ..       .+|.|.|.+.+.
T Consensus         6 q~p~~~v~eG~~v~L~C~~~~~~p~--~~~~W~k~g~-~~~~~~~~~~l~i~~v~~~dsG~Y~C~a~n~   71 (88)
T d2fcba2           6 QTPHLEFQEGETIVLRCHSWKDKPL--VKVTFFQNGK-SKKFSRSDPNFSIPQANHSHSGDYHCTGNIG   71 (88)
T ss_dssp             ECSCSEECTTCCEEEEEEEGGGCCC--EEEEEEETTE-EEEEESSCCEEEETTCCGGGCEEEEEEEEET
T ss_pred             eCCCCeEecCCeEEEEEEecCCCCC--cEEEEEeecc-cccccccccccccCccCHHHCCeEEEEEEeC
Confidence            4445668899999999999755433  5799999854 4433221 1 11       279999998764

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.22  E-value=3.3e-06  Score=56.51  Aligned_cols=87  Identities=20%  Similarity=0.289  Sum_probs=51.5

Q ss_pred             cCeEEEeCCcEEEEeeeCCcc---CCcceeEEEEeCC--Cee-eEEee----eecCCceEEEccC---CeEEEeecCcCC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFV---ADYVAVESWISDQ--GEE-LFVDM----TESTDGKYLVLPS---GELHIRDVGPED  139 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~---~~p~p~i~W~k~~--~~~-l~~~~----~~~~~~r~~~~~~---g~L~I~~v~~~D  139 (167)
                      ....+.+|++|.|.|...+..   ......+.|+|..  ..+ +.-..    ......++....+   -.|.|++++++|
T Consensus         9 ~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~D   88 (113)
T d1q9ra1           9 SSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAED   88 (113)
T ss_dssp             SEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccCC
Confidence            345678899999999875321   1123458999842  111 11111    0112234544332   269999999999


Q ss_pred             CCcceEEEeeecC---cceEEEee
Q psy12724        140 GYKSYQCRTKHRL---TGETRLSA  160 (167)
Q Consensus       140 ~~G~Y~C~a~n~~---~~~~~l~~  160 (167)
                      + |.|.|-+.+..   ..-|+|+|
T Consensus        89 s-a~YyCA~~~~~~~FG~GT~LtV  111 (113)
T d1q9ra1          89 L-AVYYCKQSYNLRTFGGGTKLEI  111 (113)
T ss_dssp             C-EEEEEEECSSSCEECCCEEEEE
T ss_pred             C-eEEEecccCCCCEECCCEEEEE
Confidence            9 99999876433   44455554

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.22  E-value=6.4e-06  Score=54.90  Aligned_cols=83  Identities=19%  Similarity=0.224  Sum_probs=51.3

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-ee--eEEeee-------ecCCceEEEcc----CCeEEEeecCcCCC
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-EE--LFVDMT-------ESTDGKYLVLP----SGELHIRDVGPEDG  140 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~~--l~~~~~-------~~~~~r~~~~~----~g~L~I~~v~~~D~  140 (167)
                      ..+.+|++|.|.|....    ....+.|+|... ..  +.-...       .....++....    +..|.|++++.+|+
T Consensus         9 ~~~~~G~svtl~C~~s~----~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DS   84 (114)
T d1ogae1           9 LFRKEGQNVTLSCEQNL----NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPT   84 (114)
T ss_dssp             EEEETTCCEEECCEECS----CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCC
T ss_pred             EEEcCCCCEEEEEEEec----CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCc
Confidence            56789999999999752    234689997431 11  111110       01122333332    22699999999999


Q ss_pred             CcceEEEeeecC------cceEEEeeeC
Q psy12724        141 YKSYQCRTKHRL------TGETRLSATK  162 (167)
Q Consensus       141 ~G~Y~C~a~n~~------~~~~~l~~~~  162 (167)
                       |.|.|.+....      ..-|+|+|.+
T Consensus        85 -a~YyCa~~~~~~~~~~FG~GT~LtV~~  111 (114)
T d1ogae1          85 -AFYLCASSSRSSYEQYFGPGTRLTVTE  111 (114)
T ss_dssp             -EEEEEEEESSTTSCCEECCCEEEEEES
T ss_pred             -eeEEEeeccCCCCccEECCCEEEEECC
Confidence             99999765432      4456777655

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.22  E-value=5.6e-07  Score=57.07  Aligned_cols=59  Identities=14%  Similarity=0.218  Sum_probs=42.0

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc-eE------EEeeeEEEecC
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD-FV------VSQSYTVNIMD   74 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~-~v------~~g~y~c~~~~   74 (167)
                      ..++|+...|.+|+++.|.|.+.+.+.+  ..+.|++++ +.+..+... .+      .+|.|+|++.+
T Consensus         7 i~~~P~~~~v~~G~~v~L~C~~~~~~~~--~~~~w~~~g-~~~~~~~~~l~i~~v~~~dsG~Y~C~a~n   72 (85)
T d2fcba1           7 LKLEPQWINVLQEDSVTLTCRGTHSPES--DSIQWFHNG-NLIPTHTQPSYRFKANNNDSGEYTCQTGQ   72 (85)
T ss_dssp             EEEESCCSEEETTCEEEEEEECSSCCCT--TCCEEEETT-EECTTCCSSEEEEECCGGGCEEEEEECTT
T ss_pred             EEECCCCeEEcCCCeEEEEEEEeeccce--eEEEeeccc-ccccccccceEEeeccccCCcEEEEECCC
Confidence            5678888999999999999999888754  247788874 344322221 22      27999998765

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.20  E-value=3e-06  Score=56.49  Aligned_cols=77  Identities=19%  Similarity=0.251  Sum_probs=47.3

Q ss_pred             CeEEEeCCcEEEEeeeCCccC-CcceeEEEEeC--CCee--eEEeee---ecCCceEEEccCC---eEEEeecCcCCCCc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVA-DYVAVESWISD--QGEE--LFVDMT---ESTDGKYLVLPSG---ELHIRDVGPEDGYK  142 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~-~p~p~i~W~k~--~~~~--l~~~~~---~~~~~r~~~~~~g---~L~I~~v~~~D~~G  142 (167)
                      ...+.+|++|+|.|....... .-...+.|+|.  +..+  +.-...   .....|+....++   .|.|++++.+|+ |
T Consensus        10 ~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds-a   88 (111)
T d1j05a_          10 SLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV-A   88 (111)
T ss_dssp             EEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGC-E
T ss_pred             EEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccC-c
Confidence            345678999999998743211 12234899874  2111  111000   0122355554443   699999999999 9


Q ss_pred             ceEEEeeec
Q psy12724        143 SYQCRTKHR  151 (167)
Q Consensus       143 ~Y~C~a~n~  151 (167)
                      .|.|.+.+.
T Consensus        89 ~YyCa~~~~   97 (111)
T d1j05a_          89 TYYCQQTNE   97 (111)
T ss_dssp             EEEEEECSS
T ss_pred             cEEEeecCC
Confidence            999987654

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.4e-06  Score=55.52  Aligned_cols=60  Identities=15%  Similarity=0.206  Sum_probs=40.4

Q ss_pred             eeeEEeEEE-EEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec----CCc-eE--------EEeeeEEEecCe
Q psy12724         13 YEAQVYDVF-VIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID----NQD-FV--------VSQSYTVNIMDE   75 (167)
Q Consensus        13 ~~~~~~~~~-v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~----~~~-~v--------~~g~y~c~~~~~   75 (167)
                      +++.|.+.. +.+|+++.|.|.+.+.|.+   .+.|.++++..+...    ... .+        ..|.|+|.+.+.
T Consensus         3 i~i~P~~~~~~~~G~~v~l~C~~~g~p~p---~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~   76 (90)
T d1vcaa2           3 IETTPESRYLAQIGDSVSLTCSTTGCESP---FFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCE   76 (90)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSSC---EEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEET
T ss_pred             EEEECCCcEEEECCCEEEEEEeccCCCCc---eEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeC
Confidence            345565544 5679999999999988764   799999876443211    111 11        279999998764

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.19  E-value=3.7e-07  Score=60.82  Aligned_cols=74  Identities=16%  Similarity=0.275  Sum_probs=46.1

Q ss_pred             cCeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEee---eecCCceEEEccC---CeEEEeecCcCCCCc
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDM---TESTDGKYLVLPS---GELHIRDVGPEDGYK  142 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~---~~~~~~r~~~~~~---g~L~I~~v~~~D~~G  142 (167)
                      ....+.+|++|+|.|.....   ....+.|+|.. +..   |....   .+....||....+   -.|.|++++++|+ |
T Consensus         9 ~s~~~~~G~~vtl~C~~s~~---~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds-a   84 (107)
T d3cx5k1           9 VSLAASLGDRVTISCRASQD---INNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDI-A   84 (107)
T ss_dssp             TTCCBCSSSCCEEEEEESSC---CTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCC-S
T ss_pred             CEEEECCCCCEEEEEEcCCC---cCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCC-C
Confidence            34567899999999987643   34457998742 111   11000   0111234433222   2799999999999 9


Q ss_pred             ceEEEeee
Q psy12724        143 SYQCRTKH  150 (167)
Q Consensus       143 ~Y~C~a~n  150 (167)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (107)
T d3cx5k1          85 TYFCQHHI   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             cEEeeeCC
Confidence            99997654

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.19  E-value=7.5e-06  Score=54.42  Aligned_cols=72  Identities=19%  Similarity=0.281  Sum_probs=45.5

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeC--CCee--eEEee------eecCCceEEEcc-C---CeEEEeecCcCC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISD--QGEE--LFVDM------TESTDGKYLVLP-S---GELHIRDVGPED  139 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~--~~~~--l~~~~------~~~~~~r~~~~~-~---g~L~I~~v~~~D  139 (167)
                      ...+.+|++|.|.|...+  +  ...+.|+|.  +..+  +....      ......++.... +   -.|.|.+++++|
T Consensus         8 ~~~~~~G~svtl~C~~~~--~--~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (113)
T d2ntsp1           8 YLIKTRGQQVTLSCSPIS--G--HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGD   83 (113)
T ss_dssp             EEEEETTCCEEEEEECST--T--CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGG
T ss_pred             eEEECCCCCEEEEEEECC--C--CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCccc
Confidence            356789999999999653  2  346899982  2222  11100      011223443332 2   269999999999


Q ss_pred             CCcceEEEeee
Q psy12724        140 GYKSYQCRTKH  150 (167)
Q Consensus       140 ~~G~Y~C~a~n  150 (167)
                      + |.|.|.+..
T Consensus        84 s-a~YyCA~~~   93 (113)
T d2ntsp1          84 S-ALYLCASSL   93 (113)
T ss_dssp             C-EEEEEEEES
T ss_pred             c-eeeeeeeeC
Confidence            9 999998764

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=5.2e-07  Score=57.28  Aligned_cols=61  Identities=13%  Similarity=0.157  Sum_probs=41.0

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee-----cCCceE------EEeeeEEEecCeE
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI-----DNQDFV------VSQSYTVNIMDEH   76 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~-----~~~~~v------~~g~y~c~~~~~~   76 (167)
                      ...+++..+.+|+++.|.|.+.+..+  .+.+.|+|++......     ++.+.+      .+|.|+|.+.|..
T Consensus         6 ~~~p~~~~v~~G~~~~l~C~~~~~~p--~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~   77 (89)
T d1gl4b_           6 VEEQRSQSVRPGADVTFICTAKSKSP--AYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMF   77 (89)
T ss_dssp             ECSCCEEEECTTCCEEEEEEEEESSS--CCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSS
T ss_pred             EcCCCeEEEeCCCcEEEEEEccCCCC--CCEEEEecCCceeeccccEeeceEEEEecCCcccCEEEEEEEEECC
Confidence            34577889999999999999974332  2589999986543221     111111      2799999987643

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.9e-06  Score=55.77  Aligned_cols=39  Identities=15%  Similarity=0.198  Sum_probs=32.7

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      +.+...+.+..+.+|+.+.|.|.+.+.|.+  ..+.|+|++
T Consensus         3 P~i~~~~~~~~v~~G~~v~l~C~v~g~P~p--~~i~W~k~~   41 (101)
T d3b5ha1           3 PRVKAVKSSEHINEGETAMLVCKSESVPPV--TDWAWYKIT   41 (101)
T ss_dssp             CCCEESCSEEEECTTSCEEEEEECCCSSCC--CEEEEEECC
T ss_pred             ceEEEcCCcEEECcCCeEEEEEEEEecCCe--eEEEEEecc
Confidence            456777888999999999999999998754  369999875

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.16  E-value=5.3e-07  Score=59.11  Aligned_cols=38  Identities=16%  Similarity=0.256  Sum_probs=31.1

Q ss_pred             eceee-EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         11 QYYEA-QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        11 ~~~~~-~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      |.+.. .|++++|.+|+++.|.|.+.+.|.+   .|.|+|++
T Consensus         5 P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p---~v~W~k~~   43 (109)
T d2fdbp2           5 PILQAGLPANASTVVGGDVEFVCKVYSDAQP---HIQWIKHV   43 (109)
T ss_dssp             CEECTTCSCCEEECTTCCEEEEEEEECSSCC---EEEEEEEC
T ss_pred             CEEcCCCCCCEEEecCCcEEEEEEEEEcCCC---eEEEEecC
Confidence            33443 3789999999999999999998764   79999874

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.16  E-value=3e-06  Score=55.81  Aligned_cols=72  Identities=18%  Similarity=0.248  Sum_probs=44.2

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-e-eeEEee-----eecCCceEEEccCC---eEEEeecCcCCCCcc
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-E-ELFVDM-----TESTDGKYLVLPSG---ELHIRDVGPEDGYKS  143 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~-~l~~~~-----~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~  143 (167)
                      ...+.+|++|+|.|....    ....+.|+|... . +..-..     .+....++....++   .|.|.+++.+|+ |.
T Consensus         9 ~l~~~~G~~vtl~C~~s~----~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds-a~   83 (104)
T d1yqvl1           9 IMSASPGEKVTMTCSASS----SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDA-AT   83 (104)
T ss_dssp             EEEECTTCCEEEEEEESS----CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC-EE
T ss_pred             eEEECCCCCEEEEEEeCC----CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccC-Ce
Confidence            346778999999998753    223469987431 1 111000     01112344433222   599999999999 99


Q ss_pred             eEEEeee
Q psy12724        144 YQCRTKH  150 (167)
Q Consensus       144 Y~C~a~n  150 (167)
                      |.|.+..
T Consensus        84 YyCa~~~   90 (104)
T d1yqvl1          84 YYCQQWG   90 (104)
T ss_dssp             EEEEECS
T ss_pred             EEEEecC
Confidence            9997654

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.16  E-value=7.8e-06  Score=54.17  Aligned_cols=73  Identities=12%  Similarity=0.223  Sum_probs=45.2

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC--Cee--eEEeee------ecCCceEEEc----cCCeEEEeecCcCC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ--GEE--LFVDMT------ESTDGKYLVL----PSGELHIRDVGPED  139 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~--~~~--l~~~~~------~~~~~r~~~~----~~g~L~I~~v~~~D  139 (167)
                      ...+.+|++|+|.|...+    -.+.+.|+|..  ..+  +.....      +....++...    .+..|.|.+++.+|
T Consensus        10 ~~~~~~G~~vtl~C~~s~----~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (110)
T d2aq2a1          10 NKVAVTGEKVTLSCQQTN----NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQ   85 (110)
T ss_dssp             EEEECTTCCEEEEEEESS----CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEEcCCCCEEEEEEECC----CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhh
Confidence            456778999999998753    23468999832  112  111110      0011222221    12369999999999


Q ss_pred             CCcceEEEeeec
Q psy12724        140 GYKSYQCRTKHR  151 (167)
Q Consensus       140 ~~G~Y~C~a~n~  151 (167)
                      + |.|.|.+...
T Consensus        86 s-a~YyCa~~~~   96 (110)
T d2aq2a1          86 T-SVYFCASGGG   96 (110)
T ss_dssp             C-EEEEEEEEET
T ss_pred             C-EEEEEeeCCC
Confidence            9 9999987754

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.15  E-value=8.3e-07  Score=57.49  Aligned_cols=33  Identities=12%  Similarity=0.163  Sum_probs=28.6

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +++..+.+|+++.|+|.+.+.|.+   .+.|+|++.
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~---~v~W~k~g~   42 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMG---YPNYFKNGK   42 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCC---CCEEEETTE
T ss_pred             CCCEEEecCCeEEEEEEEEEecCC---EEEEEEeee
Confidence            468999999999999999988754   799999864

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.14  E-value=7e-06  Score=54.76  Aligned_cols=75  Identities=21%  Similarity=0.339  Sum_probs=45.5

Q ss_pred             CeEEEeCCcEEEEeeeCCcc--CCcceeEEEEeCC-Ceee---EEee---eecCCceEEEccCC---eEEEeecCcCCCC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFV--ADYVAVESWISDQ-GEEL---FVDM---TESTDGKYLVLPSG---ELHIRDVGPEDGY  141 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~--~~p~p~i~W~k~~-~~~l---~~~~---~~~~~~r~~~~~~g---~L~I~~v~~~D~~  141 (167)
                      ...+.+|++|+|+|...+..  ......+.|++.. +...   .-..   .+....|+....++   .|.|++++.+|+ 
T Consensus        10 slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~Ds-   88 (112)
T d1mjul1          10 SVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDV-   88 (112)
T ss_dssp             EEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGC-
T ss_pred             EEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCC-
Confidence            35677899999999875421  1123457998742 1111   1100   01122355444333   599999999999 


Q ss_pred             cceEEEee
Q psy12724        142 KSYQCRTK  149 (167)
Q Consensus       142 G~Y~C~a~  149 (167)
                      |.|.|...
T Consensus        89 AvYyCa~~   96 (112)
T d1mjul1          89 GVYYCLQH   96 (112)
T ss_dssp             EEEEEEEC
T ss_pred             ceEEEEeC
Confidence            99999543

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=6.1e-07  Score=57.86  Aligned_cols=29  Identities=21%  Similarity=0.290  Sum_probs=25.6

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCC
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSD   40 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~   40 (167)
                      |.|. +++|+.|.+|+++.|+|.+.+.|.+
T Consensus         3 P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p   31 (96)
T d2c9aa1           3 PHFL-RIQNVEVNAGQFATFQCSAIGRTVA   31 (96)
T ss_dssp             CEEC-CCCCEEECSSSCEEEEEEEESCCCS
T ss_pred             Ceec-ccCCEEEeCCCEEEEEEEEeecCCC
Confidence            5675 6899999999999999999998865

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=3.9e-06  Score=54.64  Aligned_cols=66  Identities=11%  Similarity=0.063  Sum_probs=44.0

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      +..|..|.+|+|.|..+..   ..-...|+|++. ...       ..+..-.......|.+++.+|+ |+|+|.....
T Consensus        13 ~~~V~~G~~VTL~C~~~~~---~~~~f~L~k~g~-~~~-------~~~~~~~~~a~F~l~~v~~~~~-G~Y~C~y~~~   78 (96)
T d1ucta2          13 GLVLMPGENISLTCSSAHI---PFDRFSLAKEGE-LSL-------PQHQSGEHPANFSLGPVDLNVS-GIYRCYGWYN   78 (96)
T ss_dssp             CSEECTTCCCEEEEECSSS---CCSEEEEEETTC-SSC-------CSEEECSSSEEEECCSCCGGGC-EEEEEEEECT
T ss_pred             CCccCCCCeEEEEEeCCCC---CceEEEEEECCc-ccc-------eEEcCCCcccEEEEeccccccC-cEEEEEEEcC
Confidence            3467899999999986421   223568999873 211       1111111234689999999999 9999987643

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.12  E-value=7.2e-06  Score=54.78  Aligned_cols=78  Identities=21%  Similarity=0.293  Sum_probs=46.5

Q ss_pred             cCeEEEeCCcEEEEeeeCCcc--CCcceeEEEEeCC-Ceee---EEeee---ecCCceEEEccCC---eEEEeecCcCCC
Q psy12724         73 MDEHVLKGNSAVLKCHIPSFV--ADYVAVESWISDQ-GEEL---FVDMT---ESTDGKYLVLPSG---ELHIRDVGPEDG  140 (167)
Q Consensus        73 ~~~~v~~G~~a~l~C~~~~~~--~~p~p~i~W~k~~-~~~l---~~~~~---~~~~~r~~~~~~g---~L~I~~v~~~D~  140 (167)
                      ....+.+|++|+|.|.+.+..  .....-+.|++.. +...   .....   +....++.....+   .|.|++++++|+
T Consensus         9 ~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eDs   88 (112)
T d1ncwl1           9 KTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAEDL   88 (112)
T ss_dssp             SEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCcC
Confidence            345678999999999865321  1123458998742 1221   11000   0112455443222   599999999999


Q ss_pred             CcceEEEeeec
Q psy12724        141 YKSYQCRTKHR  151 (167)
Q Consensus       141 ~G~Y~C~a~n~  151 (167)
                       |.|-|...+.
T Consensus        89 -AvYYC~~~~~   98 (112)
T d1ncwl1          89 -GVYYCWQGTH   98 (112)
T ss_dssp             -EEEEEEECSS
T ss_pred             -EeEEEEcCCC
Confidence             9999966443

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.12  E-value=6.2e-06  Score=55.15  Aligned_cols=78  Identities=19%  Similarity=0.263  Sum_probs=48.0

Q ss_pred             CeEEEeCCcEEEEeeeCCccC--CcceeEEEEeCC-CeeeEEee------eecCCceEEEccCC---eEEEeecCcCCCC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVA--DYVAVESWISDQ-GEELFVDM------TESTDGKYLVLPSG---ELHIRDVGPEDGY  141 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~--~p~p~i~W~k~~-~~~l~~~~------~~~~~~r~~~~~~g---~L~I~~v~~~D~~  141 (167)
                      ...+.+|++|+|.|...+...  .....+.|++.. +......+      .+....||....++   .|.|++++.+|+ 
T Consensus        11 s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds-   89 (113)
T d1n4xl_          11 YLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDL-   89 (113)
T ss_dssp             EEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGGC-
T ss_pred             EEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcccC-
Confidence            456789999999999753210  122467998742 11111000      01123456554333   799999999999 


Q ss_pred             cceEEEeeecC
Q psy12724        142 KSYQCRTKHRL  152 (167)
Q Consensus       142 G~Y~C~a~n~~  152 (167)
                      |.|.|...+..
T Consensus        90 avYyCa~~~~~  100 (113)
T d1n4xl_          90 GIYYCFQGSHF  100 (113)
T ss_dssp             EEEEEEECSSS
T ss_pred             EEEEEEECCCC
Confidence            99999665543

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=9.9e-07  Score=55.55  Aligned_cols=61  Identities=15%  Similarity=0.168  Sum_probs=40.7

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE-------EEeeeEEEecC
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV-------VSQSYTVNIMD   74 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v-------~~g~y~c~~~~   74 (167)
                      +.+.++|....|.+|+++.|.|.+.+.+.+  ..+.|++++. .+........       .+|.|.|.+.+
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~--~~~~~~~~~~-~~~~~~~~l~i~~v~~~d~G~Y~C~a~~   69 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEV--SSTKWFHNGS-LSEETNSSLNIVNAKFEDSGEYKCQHQQ   69 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC------CCEEEETTE-ECSCCSSEEEECSCCGGGCEEEEEECTT
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEeeeeee--cceeeeeeee-eeecccceeEECCCChhhCCcEEEEecC
Confidence            456778888999999999999999988764  2466777743 3332222111       27999998765

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2e-07  Score=59.91  Aligned_cols=41  Identities=20%  Similarity=0.276  Sum_probs=35.3

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCce
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQ   54 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~   54 (167)
                      |.|...+.+..+.+|+.+.|.|.+.+.|.+   .+.|++++...
T Consensus         3 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p---~v~W~~~~~~~   43 (92)
T d2ifga1           3 PTLKVQVPNASVDVGDDVLLRCQVEGRGLE---QAGWILTELEQ   43 (92)
T ss_dssp             CEEEEECCSSCCBTTCCEEEEEEEECSSCC---CCCEEESCCCS
T ss_pred             CEEEEeCCCEEEeCCCEEEEeeeccCCCCc---EEEEEECCcee
Confidence            567888899999999999999999998764   79999997643

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.10  E-value=2.6e-06  Score=57.72  Aligned_cols=84  Identities=21%  Similarity=0.328  Sum_probs=51.7

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ce-e--eEEee---eecCCceEEEccCC---eEEEeecCcCCCCcce
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GE-E--LFVDM---TESTDGKYLVLPSG---ELHIRDVGPEDGYKSY  144 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~-~--l~~~~---~~~~~~r~~~~~~g---~L~I~~v~~~D~~G~Y  144 (167)
                      ..+.+|++|+|.|.....   -...+.|+|.. +. +  +....   ......++....++   .|.|++++++|+ |.|
T Consensus        11 v~~~~G~svtl~C~~s~~---~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds-avY   86 (119)
T d1f3rb2          11 LSASVGDRVTLSCKGSQN---INNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDV-ATY   86 (119)
T ss_dssp             ECCCTTCCEEEEEECSSC---CBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGC-SEE
T ss_pred             EEECCCCCEEEEEEeCCC---CcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCC-eEE
Confidence            456789999999997643   23357998742 11 1  11110   01123455444333   699999999999 999


Q ss_pred             EEEeeecC---cceEEEeeeC
Q psy12724        145 QCRTKHRL---TGETRLSATK  162 (167)
Q Consensus       145 ~C~a~n~~---~~~~~l~~~~  162 (167)
                      .|.+.+..   ..-|+|++.+
T Consensus        87 yCa~~~~~~~FG~GT~LtV~~  107 (119)
T d1f3rb2          87 FCYQYNNGYTFGAGTKLELKA  107 (119)
T ss_dssp             EEEEESSSEEECCCCEECCSS
T ss_pred             EeeccCCCCeECCCeEEEEeC
Confidence            99776532   4455666643

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.09  E-value=1.7e-05  Score=53.52  Aligned_cols=86  Identities=16%  Similarity=0.159  Sum_probs=52.4

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeC--CCee--eEEee---eecCCceEEEccC-----CeEEEeecCcCCCCc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISD--QGEE--LFVDM---TESTDGKYLVLPS-----GELHIRDVGPEDGYK  142 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~--~~~~--l~~~~---~~~~~~r~~~~~~-----g~L~I~~v~~~D~~G  142 (167)
                      ..+.+|+++.|.|...+.. --...+.|+|.  ++.+  |....   .+...+|+....+     -.|.|.+++++|+ |
T Consensus        11 v~v~~G~~vtL~C~~s~~~-~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Ds-a   88 (120)
T d1hxma1          11 VPVSIGVPATLRCSMKGEA-IGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDE-G   88 (120)
T ss_dssp             EEEETTCCEEEEEEECSSC-GGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGC-E
T ss_pred             EEECCCCCEEEEEEEeccC-ccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCC-c
Confidence            4578899999999986421 01246899873  2112  11100   0112246654421     2799999999999 9


Q ss_pred             ceEEEeeecC-----------cceEEEeeeC
Q psy12724        143 SYQCRTKHRL-----------TGETRLSATK  162 (167)
Q Consensus       143 ~Y~C~a~n~~-----------~~~~~l~~~~  162 (167)
                      .|.|......           ..-|+|+|.|
T Consensus        89 ~YyCA~~~~~~~~~~~~~~~FG~GT~ltV~p  119 (120)
T d1hxma1          89 SYYCACDTLGMGGEYTDKLIFGKGTRVTVEP  119 (120)
T ss_dssp             EEEEEEECCCCSSSCCCCCEEBCCEEEEEEC
T ss_pred             eeecCcccCCCCCcCccCCEECCCcEEEEEe
Confidence            9999765422           3345677665

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.7e-06  Score=55.24  Aligned_cols=58  Identities=12%  Similarity=0.031  Sum_probs=39.6

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec-CCc-eE-------EEeeeEEEecCe
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID-NQD-FV-------VSQSYTVNIMDE   75 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~-~~~-~v-------~~g~y~c~~~~~   75 (167)
                      .++....|.+|+++.|.|.+.+.+.  ...+.|+|++. .+... ... ..       .+|.|.|.+.+.
T Consensus         5 lq~p~~~V~eG~~v~L~C~~~~~~~--~~~~~w~k~g~-~~~~~~~~~~l~i~~~~~~dsG~Y~C~a~n~   71 (89)
T d1f2qa2           5 LQASAEVVMEGQPLFLRCHGWRNWD--VYKVIYYKDGE-ALKYWYENHNISITNATVEDSGTYYCTGKVW   71 (89)
T ss_dssp             EEESCSEEETTSCEEEEEEEGGGCC--EEEEEEEETTE-ECCSCCCSSEEEESSCCGGGCEEEEEEEEET
T ss_pred             EeCCcCeEeCCCEEEEEEEecCCCC--CeEEEEEEeee-ccccccccceEEEeeeeeecCcEEEEEEEeC
Confidence            4566778999999999999976654  35899999853 33221 111 11       279999988653

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=3.1e-06  Score=56.58  Aligned_cols=75  Identities=20%  Similarity=0.370  Sum_probs=47.5

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeC--CCee--eEEee------eecCCceEEEccC---C--eEEEeecCcCC
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISD--QGEE--LFVDM------TESTDGKYLVLPS---G--ELHIRDVGPED  139 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~--~~~~--l~~~~------~~~~~~r~~~~~~---g--~L~I~~v~~~D  139 (167)
                      ..+.+|+++.|.|..++. ......+.|.|.  +...  +....      .+...+|+.+..+   +  .|.|++++.+|
T Consensus         5 ~~~~eG~svtl~C~ys~~-~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD   83 (110)
T d1u9ka_           5 YDLVEGQTLTVKCPFNIM-KYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD   83 (110)
T ss_dssp             EEECTTCCEEEEEECCHH-HHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             CcCCCCCCEEEEEEECCC-CccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence            356789999999998643 112335789984  2211  11100      0011357777642   2  49999999999


Q ss_pred             CCcceEEEeeec
Q psy12724        140 GYKSYQCRTKHR  151 (167)
Q Consensus       140 ~~G~Y~C~a~n~  151 (167)
                      + |.|.|...+.
T Consensus        84 s-a~YyCa~~~~   94 (110)
T d1u9ka_          84 S-GLYRCVIYHP   94 (110)
T ss_dssp             C-EEEEEEEECT
T ss_pred             C-EEEEEEEeCC
Confidence            9 9999987543

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=5.4e-06  Score=53.04  Aligned_cols=57  Identities=16%  Similarity=0.112  Sum_probs=38.1

Q ss_pred             EEeEEEEEeCCcEEEEeecC-CCCCCcceeeEEeeCCCceeee--cCCce-E--------EEeeeEEEecCe
Q psy12724         16 QVYDVFVIKGNAAVFKCNLP-SFVSDHLDVVSWADTDGGQYQI--DNQDF-V--------VSQSYTVNIMDE   75 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~-~~~~~~~~~i~W~k~~~~~~~~--~~~~~-v--------~~g~y~c~~~~~   75 (167)
                      .+....+.+|+++.|.|.+. +.|.   |.++|.+++......  +.... +        .+|.|+|.+.+.
T Consensus         9 p~~~~~~~~G~~~~l~C~~~~g~p~---p~v~W~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~   77 (90)
T d1gsma1           9 PEPVVAVALGASRQLTCRLACADRG---ASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCG   77 (90)
T ss_dssp             CCSEEEEETTCCEEEEEEECCSSTT---CEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCeEEEEeCCcEEEEEEecCCCCc---cEEEEEEeeeeeeeeeccCceeeEEcCccChhhCCcEEEEEEeC
Confidence            33457788999999999885 4544   589999987643221  11111 1        279999998653

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.1e-06  Score=56.43  Aligned_cols=76  Identities=7%  Similarity=0.026  Sum_probs=47.6

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeec-CC--c--eE---------EEeeeEEEecCeEE
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQID-NQ--D--FV---------VSQSYTVNIMDEHV   77 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~-~~--~--~v---------~~g~y~c~~~~~~v   77 (167)
                      +..+.+....+.+|+.+.|.|.+.+..+.+...++|+|++. .+... ..  .  ..         ..|.|+|++.+..-
T Consensus         6 ~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~-~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g   84 (103)
T d1iama1           6 RVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEK-ELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLR   84 (103)
T ss_dssp             EEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTE-EEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred             ceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccc-cccccccccccceEEEEEeeehhHCCCEEEEEEEeCCC
Confidence            45667777889999999999999875433234689999964 34321 11  0  11         14678888766544


Q ss_pred             EeCCcEEEEee
Q psy12724         78 LKGNSAVLKCH   88 (167)
Q Consensus        78 ~~G~~a~l~C~   88 (167)
                      ..|..+.+...
T Consensus        85 ~~~~~~~~~~s   95 (103)
T d1iama1          85 PQGLELFENTS   95 (103)
T ss_dssp             GGTSCEEEEEC
T ss_pred             CccCeEeeeEc
Confidence            44555555433

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.1e-06  Score=54.74  Aligned_cols=36  Identities=17%  Similarity=0.271  Sum_probs=29.0

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +...+++..+.+|+++.|.|.+. .|.   |.+.|+|++.
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~-~p~---~~v~W~k~~~   38 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVS-EDD---ANVKWFKNGE   38 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECS-SSS---CCCEEEETTE
T ss_pred             EEcCCCCEEEeCCCcEEEEEEEC-CCC---ceEEEEEeec
Confidence            34578899999999999999995 443   3699999854

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=4.9e-06  Score=54.99  Aligned_cols=70  Identities=16%  Similarity=0.118  Sum_probs=44.1

Q ss_pred             EEEeCCcEEEEeeeCCccCCcc--eeEEEEeCCCeeeEEeee-e--cCCceEEEccCCeEEEeecCcCCCCc-ceEEEee
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYV--AVESWISDQGEELFVDMT-E--STDGKYLVLPSGELHIRDVGPEDGYK-SYQCRTK  149 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~--p~i~W~k~~~~~l~~~~~-~--~~~~r~~~~~~g~L~I~~v~~~D~~G-~Y~C~a~  149 (167)
                      .+.+|+.+.|.|.+.+  +.|.  +.|+|++++ ..+..... .  ...+.+..  ...|.+. +..+|- | .|+|.|+
T Consensus        12 ~l~~G~~~~l~C~v~~--~~P~~~~~i~W~~g~-~~~~~~~~~~~~~~~~~~~~--~s~l~~~-~~~~D~-g~~ltC~a~   84 (109)
T d1vcaa1          12 PLEAGKPITVKCSVAD--VYPFDRLEIDLLKGD-HLMKSQEFLEDADRKSLETK--SLEVTFT-PVIEDI-GKVLVCRAK   84 (109)
T ss_dssp             CEETTSCEEEEEEEEE--EBSGGGEEEEEEETT-EEEEEEECCSCCSSCCCEEE--EEEEEEC-CCGGGT-TCEEEEEEE
T ss_pred             CccCCCeEEEEeEeCC--cCCCCceEEEEeccC-ceeeccccccccccCCccee--eEEEEcc-CChHHC-CcEEEEEEE
Confidence            3578999999999975  3464  478999987 55543210 0  11122322  1246665 455554 5 7999999


Q ss_pred             ecC
Q psy12724        150 HRL  152 (167)
Q Consensus       150 n~~  152 (167)
                      |.+
T Consensus        85 ~~~   87 (109)
T d1vcaa1          85 LHI   87 (109)
T ss_dssp             ECS
T ss_pred             cCc
Confidence            886

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.03  E-value=1.2e-05  Score=53.33  Aligned_cols=72  Identities=14%  Similarity=0.228  Sum_probs=44.2

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEeee------ecCCceEEEc-cC---CeEEEeecCcCCC
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDMT------ESTDGKYLVL-PS---GELHIRDVGPEDG  140 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~~------~~~~~r~~~~-~~---g~L~I~~v~~~D~  140 (167)
                      ..+.+|++|.|.|....  +  ...+.|+|.. +..   +.....      .....++... .+   ..|.|.+++.+|+
T Consensus        10 ~~~~~G~~v~l~C~~~~--~--~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Ds   85 (113)
T d1j8he1          10 LVKRTGEKVFLECVQDM--D--HENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQT   85 (113)
T ss_dssp             EEEETTCCEEECEEESS--C--CSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGC
T ss_pred             EEECCCCCEEEEEEEcC--C--ccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCc
Confidence            46678999999998642  2  2457998732 111   111100      0111333333 22   2699999999999


Q ss_pred             CcceEEEeeec
Q psy12724        141 YKSYQCRTKHR  151 (167)
Q Consensus       141 ~G~Y~C~a~n~  151 (167)
                       |.|.|.+...
T Consensus        86 -a~YyCa~~~~   95 (113)
T d1j8he1          86 -SMYLCASSST   95 (113)
T ss_dssp             -EEEEEEEECT
T ss_pred             -ccEEeeEccC
Confidence             9999988643

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=1.6e-05  Score=53.13  Aligned_cols=76  Identities=11%  Similarity=0.038  Sum_probs=43.5

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCC-ee--e-EEeee----ecCCceEE--Ec-cC--CeEEEeecCcCCCC
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQG-EE--L-FVDMT----ESTDGKYL--VL-PS--GELHIRDVGPEDGY  141 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~~--l-~~~~~----~~~~~r~~--~~-~~--g~L~I~~v~~~D~~  141 (167)
                      ..+.+|++|.|+|............+.|+|... ..  + .....    ....+++.  .. .+  -.|.|++++.+|+ 
T Consensus         9 ~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds-   87 (117)
T d1dqta_           9 VLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDT-   87 (117)
T ss_dssp             EECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGC-
T ss_pred             EEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccC-
Confidence            355689999999997432111223478998431 11  1 11110    00011111  11 12  2799999999999 


Q ss_pred             cceEEEeeec
Q psy12724        142 KSYQCRTKHR  151 (167)
Q Consensus       142 G~Y~C~a~n~  151 (167)
                      |.|.|.+...
T Consensus        88 a~YyCa~~~~   97 (117)
T d1dqta_          88 GLYLCKVELM   97 (117)
T ss_dssp             EEEEEEEEEE
T ss_pred             EeEEEEEecC
Confidence            9999988754

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=3.1e-06  Score=54.42  Aligned_cols=56  Identities=14%  Similarity=0.227  Sum_probs=37.8

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc-------eE--------EEeeeEEEecCe
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD-------FV--------VSQSYTVNIMDE   75 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~-------~v--------~~g~y~c~~~~~   75 (167)
                      +++.+..|.+|+++.|.|.+.+.+    +.+.|++++. .+..+...       .+        ..|.|+|.+.|.
T Consensus         8 i~~~~~~v~~g~~v~l~C~~~~~~----~~v~W~~~~~-~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~   78 (96)
T d1l6za2           8 LQVTNTTVKELDSVTLTCLSNDIG----ANIQWLFNSQ-SLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNP   78 (96)
T ss_dssp             EECSCSEECTTSCEEEEECCCCSS----CEEEEEETTE-ECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESS
T ss_pred             EEcCceEEeCCCeEEEEEccCCCC----CCEEEEEeee-ecccccceeccCCceEEEEeccchhhceEEEEEEEeC
Confidence            456788899999999999987643    3699999853 44322111       11        167888887664

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.00  E-value=1.7e-05  Score=53.80  Aligned_cols=74  Identities=22%  Similarity=0.320  Sum_probs=46.4

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ce-e--eEEee--------eecCCceEEEcc--CC---eEEEeecCc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GE-E--LFVDM--------TESTDGKYLVLP--SG---ELHIRDVGP  137 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~-~--l~~~~--------~~~~~~r~~~~~--~g---~L~I~~v~~  137 (167)
                      .++.+|++|.|.|.+.+..- -...+.|+|.. +. +  |....        .....+||.+..  +.   .|.|+++++
T Consensus        11 ~t~~~g~t~~LsC~~sg~~~-s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~   89 (123)
T d1hxmb1          11 STKTLSKTARLECVVSGITI-SATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEK   89 (123)
T ss_dssp             EEEETTCCEEEEEEEESSCT-TTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCG
T ss_pred             EEeCCCCCEEEEEEEcCCCc-ccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccccc
Confidence            45567999999999865310 12357998732 11 1  11100        001235787653  22   599999999


Q ss_pred             CCCCcceEEEeee
Q psy12724        138 EDGYKSYQCRTKH  150 (167)
Q Consensus       138 ~D~~G~Y~C~a~n  150 (167)
                      +|+ |.|.|-...
T Consensus        90 ~Ds-a~YyCA~~~  101 (123)
T d1hxmb1          90 QDI-ATYYCALWE  101 (123)
T ss_dssp             GGC-EEEEEEEEE
T ss_pred             ccC-cEEEEeeeC
Confidence            999 999998654

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.00  E-value=1.7e-05  Score=51.71  Aligned_cols=67  Identities=16%  Similarity=0.154  Sum_probs=42.9

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeee
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      +..|..|.+|+|.|..+.    +.....|+|++. ......   ... ..........|.++...|+ |.|+|....
T Consensus        14 ~~~V~~G~~VTL~C~~~~----~~~~f~L~k~g~-~~~~~~---~~~-~~~~~~~~f~~~~~~~~~~-G~Y~C~y~~   80 (99)
T d1nkra2          14 GPTVLAGENVTLSCSSRS----SYDMYHLSREGE-AHERRL---PAG-PKVNGTFQADFPLGPATHG-GTYRCFGSF   80 (99)
T ss_dssp             CSEECTTCEEEEEEEESS----CCSEEEEEETTC-SSCEEE---ECE-EEETTEEEEEEEEEECCSC-EEEEEEEEE
T ss_pred             CCcccCCCeEEEEECCCC----CccEEEEEECCC-ccccEE---Ecc-ccCCccEEEEEeccccccC-EEEEEEeec
Confidence            457788999999999853    444678889873 221110   011 1111112468889999999 999997654

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.00  E-value=1.3e-05  Score=53.13  Aligned_cols=72  Identities=17%  Similarity=0.229  Sum_probs=44.4

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeC--CCee--eEEeee------ecCCceEEEcc-C---CeEEEeecCcCC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISD--QGEE--LFVDMT------ESTDGKYLVLP-S---GELHIRDVGPED  139 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~--~~~~--l~~~~~------~~~~~r~~~~~-~---g~L~I~~v~~~D  139 (167)
                      ...+.+|+++.|.|....  +  ...+.|+|.  +..+  |.....      ....+++.... +   -.|.|.+++++|
T Consensus         8 ~~~~~~G~svtl~C~~s~--~--~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (112)
T d2bnub1           8 FQVLKTGQSMTLQCAQDM--N--HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQ   83 (112)
T ss_dssp             EEEEETTCCEEEEEEESS--C--CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGG
T ss_pred             eEEECCCCCEEEEEEEEC--C--ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHH
Confidence            346788999999998753  2  245899873  2111  111110      01122333322 2   269999999999


Q ss_pred             CCcceEEEeee
Q psy12724        140 GYKSYQCRTKH  150 (167)
Q Consensus       140 ~~G~Y~C~a~n  150 (167)
                      + |.|.|.+..
T Consensus        84 s-avYyCA~~~   93 (112)
T d2bnub1          84 T-SVYFCASSY   93 (112)
T ss_dssp             C-EEEEEEEEC
T ss_pred             C-EEEEEeecC
Confidence            9 999997753

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=5.4e-05  Score=50.43  Aligned_cols=76  Identities=11%  Similarity=0.010  Sum_probs=44.5

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcc-eeEEEEeCCCee---eEEeee------ecCCceEEE--ccC-C--eEEEeecCcCC
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYV-AVESWISDQGEE---LFVDMT------ESTDGKYLV--LPS-G--ELHIRDVGPED  139 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~---l~~~~~------~~~~~r~~~--~~~-g--~L~I~~v~~~D  139 (167)
                      ..+..|++|.|.|...+. .... ..+.|++..+..   +.-...      ....+|+..  ..+ +  .|.|++++.+|
T Consensus        10 ~~v~~g~svtL~C~~s~~-~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   88 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYN-LFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQ   88 (118)
T ss_dssp             EEECBTTBEEEEEEESCC-SSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGG
T ss_pred             cEEeCCCCEEEEEEEecC-CCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCccc
Confidence            356689999999998643 1122 234666654322   110000      011233332  222 2  69999999999


Q ss_pred             CCcceEEEeeecC
Q psy12724        140 GYKSYQCRTKHRL  152 (167)
Q Consensus       140 ~~G~Y~C~a~n~~  152 (167)
                      + |.|.|.+....
T Consensus        89 s-avYyCa~~~~~  100 (118)
T d1yjdc1          89 T-DIYFCKIEVMY  100 (118)
T ss_dssp             C-EEEEEEEEEEE
T ss_pred             C-eEEEEEEeccc
Confidence            9 99999876643

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=4.7e-06  Score=54.23  Aligned_cols=67  Identities=13%  Similarity=0.174  Sum_probs=42.9

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeee
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      +..|..|++|+|.|..+-    +......+|++. .... .   ....-.......+.|.+++.+|+ |.|+|....
T Consensus        12 s~~V~~G~~VTL~C~~~~----~~~~f~L~keg~-~~~~-~---~~~~~~~~~~a~F~i~~v~~~~~-G~Y~C~y~~   78 (96)
T d1ugna1          12 GSVITQGSPVTLRCQGGQ----ETQEYRLYREKK-TAPW-I---TRIPQELVKKGQFPIPSITWEHT-GRYRCYYGS   78 (96)
T ss_dssp             CSEEETTCCEEEEEECCT----TCCCEEEEESSS-CCHH-H---HTSCHHHHTTTEEEESSCCGGGC-EEEEEEEEE
T ss_pred             CCccCCCCcEEEEEeCCC----CCCEEEEEECCC-Cccc-E---EEccCCCCCEEEEEEEecCHHHC-CeEEEEEeC
Confidence            456789999999999752    333456678763 2100 0   00000001235799999999999 999998754

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.95  E-value=6.7e-07  Score=58.37  Aligned_cols=72  Identities=21%  Similarity=0.331  Sum_probs=46.8

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeC--CCee--eEEee---eecCCceEEEccC-----CeEEEeecCcCCCCc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISD--QGEE--LFVDM---TESTDGKYLVLPS-----GELHIRDVGPEDGYK  142 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~--~~~~--l~~~~---~~~~~~r~~~~~~-----g~L~I~~v~~~D~~G  142 (167)
                      .+|.+|++|+|.|....    ....+.|+|.  +..+  |.-..   .+...+|+.+..+     -.|.|.+++.+|+ |
T Consensus         3 lsV~eG~~vtL~C~~~~----~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds-a   77 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT----SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADT-A   77 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS----CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTC-S
T ss_pred             ceECCCCCEEEEEEEeC----CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccC-E
Confidence            45678999999998753    3457899973  2111  11110   1122355554321     2699999999999 9


Q ss_pred             ceEEEeeec
Q psy12724        143 SYQCRTKHR  151 (167)
Q Consensus       143 ~Y~C~a~n~  151 (167)
                      .|.|.+...
T Consensus        78 ~YyCA~~~~   86 (96)
T d1ymmd1          78 SYFCATDTT   86 (96)
T ss_dssp             CCEEEEEET
T ss_pred             EEeEeEecC
Confidence            999987654

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1e-05  Score=51.82  Aligned_cols=59  Identities=15%  Similarity=0.299  Sum_probs=39.3

Q ss_pred             ceeeEEeE-EEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCce----------E--------EEeeeEEEe
Q psy12724         12 YYEAQVYD-VFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDF----------V--------VSQSYTVNI   72 (167)
Q Consensus        12 ~~~~~~~~-~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~----------v--------~~g~y~c~~   72 (167)
                      .|.....+ ..|.+|+++.|.|.+.+ |.   |.+.|+|++. .+.++..+.          +        .+|.|+|.+
T Consensus         7 ~f~~~l~~~~~v~~G~~v~l~c~v~~-p~---~~v~W~k~g~-~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a   81 (94)
T d1pd6a_           7 AFQKKLEPAYQVSKGHKIRLTVELAD-HD---AEVKWLKNGQ-EIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV   81 (94)
T ss_dssp             SCSEECCSEEEEETTSCEEEEEECSS-SS---SCCEEEESSS-EECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEE
T ss_pred             cEEEeCCCCEEECcCCeEEEEEEECC-CC---ceEEEEEcCc-cceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEE
Confidence            35555554 56899999999999954 43   3699999855 454433221          1        168888887


Q ss_pred             cCe
Q psy12724         73 MDE   75 (167)
Q Consensus        73 ~~~   75 (167)
                      .+.
T Consensus        82 ~n~   84 (94)
T d1pd6a_          82 GGE   84 (94)
T ss_dssp             TTE
T ss_pred             eeE
Confidence            653

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=97.94  E-value=1.3e-06  Score=55.80  Aligned_cols=40  Identities=23%  Similarity=0.232  Sum_probs=31.2

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceee
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ   56 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~   56 (167)
                      +|...++|..|.+|+++.|.|.+. .|.   |.+.|+|++. .+.
T Consensus         3 ~i~~~l~d~~v~~G~~~~~~c~vs-~p~---~~v~W~k~g~-~i~   42 (89)
T d1tiua_           3 EVEKPLYGVEVFVGETAHFEIELS-EPD---VHGQWKLKGQ-PLT   42 (89)
T ss_dssp             CCSBCCCCEEEETTSCCCEEEBCS-SSS---CCCBCCSSSC-CCC
T ss_pred             EEEcCCcCEEEeCCCcEEEEEEEC-CCC---cEEEEEEeee-ecc
Confidence            356678999999999999999984 443   3699999854 443

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.93  E-value=8.9e-06  Score=54.21  Aligned_cols=72  Identities=22%  Similarity=0.357  Sum_probs=44.6

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEeee----e--cCCceEEEcc----CCeEEEeecCcCC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDMT----E--STDGKYLVLP----SGELHIRDVGPED  139 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~~----~--~~~~r~~~~~----~g~L~I~~v~~~D  139 (167)
                      ...+.+|++|.|.|....  +  ...+.|+|.. +..   |.....    +  ....|+....    +..|.|++++.+|
T Consensus        10 ~~~~~~G~~v~l~C~~~~--~--~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (113)
T d1nfdb1          10 HIIKEKGGRSVLTCIPIS--G--HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELED   85 (113)
T ss_dssp             EEEEETTCCCEEEEECCT--T--CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGG
T ss_pred             EEEEeCCCCEEEEEEeCC--C--CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCC
Confidence            356778999999998643  2  2358999843 111   111110    0  1123443321    2269999999999


Q ss_pred             CCcceEEEeee
Q psy12724        140 GYKSYQCRTKH  150 (167)
Q Consensus       140 ~~G~Y~C~a~n  150 (167)
                      + |.|.|.+..
T Consensus        86 s-a~YyCa~~~   95 (113)
T d1nfdb1          86 S-AMYFCASSL   95 (113)
T ss_dssp             C-EEECEEEES
T ss_pred             c-eeEEEEeec
Confidence            9 999997753

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2e-05  Score=52.73  Aligned_cols=76  Identities=13%  Similarity=0.098  Sum_probs=44.2

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcc-eeEEEEeCCC-ee---eEEeeeec----CCceEE--EccCC---eEEEeecCcCCC
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYV-AVESWISDQG-EE---LFVDMTES----TDGKYL--VLPSG---ELHIRDVGPEDG  140 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~-~~---l~~~~~~~----~~~r~~--~~~~g---~L~I~~v~~~D~  140 (167)
                      ..+.+|++|.|+|..... +.+. ..+.|+|... ..   +.-.....    ...++.  ...++   .|.|++++.+|+
T Consensus         9 ~~~~~g~~vtL~C~~~~~-~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   87 (118)
T d1i8lc_           9 VLASSRGIASFVCEYASP-GKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDT   87 (118)
T ss_dssp             EECCSSSCEEEEEEECCC-SCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGC
T ss_pred             EEEeCCCcEEEEEEcccc-ccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCC
Confidence            355689999999997532 2222 2579998532 11   11111000    001111  11122   699999999999


Q ss_pred             CcceEEEeeecC
Q psy12724        141 YKSYQCRTKHRL  152 (167)
Q Consensus       141 ~G~Y~C~a~n~~  152 (167)
                       |.|.|.+....
T Consensus        88 -a~YyCa~~~~~   98 (118)
T d1i8lc_          88 -GLYICKVELMY   98 (118)
T ss_dssp             -EEEEEEEEEEE
T ss_pred             -EEEEEeEeccc
Confidence             99999887643

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.91  E-value=5e-06  Score=53.73  Aligned_cols=33  Identities=15%  Similarity=0.419  Sum_probs=26.8

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      ..+.++..|+++.|.|.+.|.|.+   .+.|++++.
T Consensus        12 ~~~~t~~~G~~v~l~C~~~g~P~p---~i~W~~~g~   44 (100)
T d1qz1a3          12 IVNATANLGQSVTLVCDADGFPEP---TMSWTKDGE   44 (100)
T ss_dssp             EEEEETTSCCCEEEEEEEEEESCC---EEEEEETTE
T ss_pred             ceeEEEcCCCCEEEEEEEEEecCC---EEEEEeCCc
Confidence            445667789999999999988864   799999853

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=9.6e-06  Score=53.30  Aligned_cols=41  Identities=10%  Similarity=0.151  Sum_probs=30.5

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceee
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ   56 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~   56 (167)
                      ..+....+.+|+.+.|+|.+.|.-..+.+.|+|+|++. .+.
T Consensus         7 i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~-~i~   47 (106)
T d1zxqa1           7 LTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNE-TLH   47 (106)
T ss_dssp             EEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTE-EEE
T ss_pred             ecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCE-Eee
Confidence            45666788999999999999885332246899999854 443

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.89  E-value=2.4e-05  Score=51.80  Aligned_cols=72  Identities=15%  Similarity=0.240  Sum_probs=44.5

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEeee------ecCCceEEEc-c---CCeEEEeecCcCC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDMT------ESTDGKYLVL-P---SGELHIRDVGPED  139 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~~------~~~~~r~~~~-~---~g~L~I~~v~~~D  139 (167)
                      ...+.+|++|+|.|....  +  ...+.|+|.. +..   |.-...      .....++... .   +..|.|.+++++|
T Consensus         7 ~~~~~~G~svtL~C~~~~--~--~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   82 (112)
T d2cdeb1           7 YLVIGTGKKITLECSQTM--G--HDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSH   82 (112)
T ss_dssp             EEEEETTCCBCCEEEETT--C--CSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTT
T ss_pred             EEEECCCCCEEEEEEEeC--C--cccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccc
Confidence            356778999999999752  2  2458999832 111   111110      0111223332 1   2369999999999


Q ss_pred             CCcceEEEeee
Q psy12724        140 GYKSYQCRTKH  150 (167)
Q Consensus       140 ~~G~Y~C~a~n  150 (167)
                      + |.|.|-+..
T Consensus        83 s-a~YyCA~~~   92 (112)
T d2cdeb1          83 T-SQYLCASSE   92 (112)
T ss_dssp             C-SEEEEEEEC
T ss_pred             c-ccEEEEEec
Confidence            9 999998764

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=97.88  E-value=2.6e-06  Score=54.99  Aligned_cols=32  Identities=16%  Similarity=0.199  Sum_probs=26.3

Q ss_pred             eEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         18 YDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        18 ~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      ....|..|+++.|.|.+.|.|.   |.+.|+|++.
T Consensus        13 ~~~~v~~G~~v~l~C~~~g~P~---p~i~W~kng~   44 (97)
T d3dara1          13 RLHAVPAANTVKFRCPAGGNPM---PTMRWLKNGK   44 (97)
T ss_dssp             CEEEECTTCCEEEECCEEEESC---CEEEEEETTE
T ss_pred             ccEEECCCCcEEEEEEEeEECC---CEEEEEECCE
Confidence            3456789999999999998876   4799999854

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=6.4e-06  Score=52.89  Aligned_cols=54  Identities=20%  Similarity=0.272  Sum_probs=38.0

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc-------eE--------EEeeeEEEecCe
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD-------FV--------VSQSYTVNIMDE   75 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~-------~v--------~~g~y~c~~~~~   75 (167)
                      ..+..+.+|+++.|.|.+.+.+    |.+.|.+++.. +..+..+       .+        .+|.|+|.+.+.
T Consensus         4 ~~~~~~~~G~~~~l~C~~~g~~----~~v~W~~~g~~-l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~   72 (92)
T d1olza1           4 YRQHFFKHGGTAELKCSQKSNL----ARVFWKFQNGV-LKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEER   72 (92)
T ss_dssp             EEEEEEETTSCEEECCCCSCTT----CEEEEEESSSB-CCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEE
T ss_pred             hhheeEeCCCEEEEEEEeeccC----CceeeecCccc-ceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEc
Confidence            3567899999999999998733    36899998653 4332221       11        279999998754

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.86  E-value=5.6e-05  Score=49.98  Aligned_cols=90  Identities=20%  Similarity=0.348  Sum_probs=52.6

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---eEEeee-------ecCCceEEEc--cCCeEEEeecCcCCC
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---LFVDMT-------ESTDGKYLVL--PSGELHIRDVGPEDG  140 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l~~~~~-------~~~~~r~~~~--~~g~L~I~~v~~~D~  140 (167)
                      ...+.+|++|.|.|..+..   -...+.|+|.. +..   |.....       .....|+...  .+..|.|+.++.+|+
T Consensus        10 ~~~~~~G~~vtL~C~~~~~---~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~ds   86 (112)
T d1fo0b_          10 WRLVPRGQAVNLRCILKNS---QYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQG   86 (112)
T ss_dssp             EEECCTTCCEEEEEEESCT---TCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSC
T ss_pred             eEEECCCCCEEEEEEEecC---CCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccCC
Confidence            3456789999999998643   23468999842 111   111000       0112455443  345799999999999


Q ss_pred             CcceEEEeeecCcceEEEeeeCCeeeC
Q psy12724        141 YKSYQCRTKHRLTGETRLSATKGRLVI  167 (167)
Q Consensus       141 ~G~Y~C~a~n~~~~~~~l~~~~~~~~~  167 (167)
                       +.|.|.+.....+....-=.+++|.|
T Consensus        87 -a~Y~Ca~~~~~~~~~~~FG~GT~LtV  112 (112)
T d1fo0b_          87 -RTLYCTCSADRVGNTLYFGEGSRLIV  112 (112)
T ss_dssp             -EEEEEEEESSSSSCCCEECCCEEEEC
T ss_pred             -ccEEEEEecCCCCCeeEeCCCEEEEC
Confidence             99999865433222122233555553

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=7.2e-06  Score=53.00  Aligned_cols=38  Identities=24%  Similarity=0.385  Sum_probs=30.8

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCcee
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQY   55 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~   55 (167)
                      ....++.|.+|+++.|.|.+.+.|.   |.|.|+|+++...
T Consensus         6 t~~~~v~v~~G~~v~l~C~~~g~p~---p~v~W~~~~~~~~   43 (102)
T d1f97a1           6 TAQSDVQVPENESIKLTCTYSGFSS---PRVEWKFVQGSTT   43 (102)
T ss_dssp             CSCSEEEEETTCCEEEECEEESCSS---EEEEEEEEETTEE
T ss_pred             ccCCcEEEeCCCEEEEEEEcCCCCC---CeEEEEeccccce
Confidence            3456688999999999999998775   4799999876544

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.79  E-value=4.1e-05  Score=51.74  Aligned_cols=73  Identities=19%  Similarity=0.400  Sum_probs=47.0

Q ss_pred             EEEeCCcEEEEeeeCCc-cCCcceeEEEEeCC-Ceee--EEee--------eecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSF-VADYVAVESWISDQ-GEEL--FVDM--------TESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~-~~~p~p~i~W~k~~-~~~l--~~~~--------~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.+.++ +.++..-+.|+|.. +..+  .-.+        .+.-.+|+.+..+.     .|.|++++.+
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~e   90 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPV   90 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGG
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeec
Confidence            35679999999998653 13344568999742 1111  1111        01124688876432     5999999999


Q ss_pred             CCCcceEEEee
Q psy12724        139 DGYKSYQCRTK  149 (167)
Q Consensus       139 D~~G~Y~C~a~  149 (167)
                      |+ +.|.|-..
T Consensus        91 Ds-AvYyCAr~  100 (120)
T d2agjh1          91 DT-ATYYCART  100 (120)
T ss_dssp             GC-EEEEEEEE
T ss_pred             cc-eEEeeEec
Confidence            99 99999644

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=4e-06  Score=54.38  Aligned_cols=38  Identities=21%  Similarity=0.390  Sum_probs=30.7

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCce
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQ   54 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~   54 (167)
                      ...+.++.|.+|+++.|.|.+.+.|.   |.+.|.|+++..
T Consensus         8 ~~~~~~v~v~~g~~v~L~C~~~g~p~---p~v~W~~~~~~~   45 (105)
T d1nbqa1           8 HSSEPEVRIPENNPVKLSCAYSGFSS---PRVEWKFDQGDT   45 (105)
T ss_dssp             ECSCSBCCEETTCCCEEECEEESCSS---EEEEEEEEETTE
T ss_pred             ECCCCeEEEeCCCeEEEEEEeCCCCC---CeeEEEeeeece
Confidence            34556778999999999999998875   479999987653

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.70  E-value=6e-05  Score=48.77  Aligned_cols=67  Identities=10%  Similarity=0.083  Sum_probs=44.2

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEcc---CCeEEEeecCcCCCCcceEEEeee
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLP---SGELHIRDVGPEDGYKSYQCRTKH  150 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~---~g~L~I~~v~~~D~~G~Y~C~a~n  150 (167)
                      +..|..|.+|+|.|..+.    ......++|++.......    .....  ..   ...+.|.+++.+|+ |.|+|....
T Consensus        10 ~~~V~~G~~VTl~C~~~~----~~~~f~L~keg~~~~~~~----~~~~~--~~~~~~a~F~l~~v~~~~~-G~Y~C~y~~   78 (96)
T d1nkra1          10 GPLVKSEETVILQCWSDV----MFEHFLLHREGMFNDTLR----LIGEH--HDGVSKANFSISRMTQDLA-GTYRCYGSV   78 (96)
T ss_dssp             CSEEETTCCEEEEEEESS----CCSEEEEEEESSSCEEEE----EECEE--ETTEEEEEEEESSCCGGGC-EEEEEEEEB
T ss_pred             CCccCCCCcEEEEECCCC----CCCEEEEEECCCcCCcee----eeeee--cCCceEEEEEEcccCcccC-eEEEEEEEc
Confidence            467889999999999853    344667888763221100    00000  11   13599999999999 999998754


Q ss_pred             c
Q psy12724        151 R  151 (167)
Q Consensus       151 ~  151 (167)
                      .
T Consensus        79 ~   79 (96)
T d1nkra1          79 T   79 (96)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=2.2e-05  Score=52.06  Aligned_cols=35  Identities=14%  Similarity=0.193  Sum_probs=29.9

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      ..++++.|.+|+++.|.|.+.|.|.   |.|.|+|++.
T Consensus        14 ~~~~~v~v~~G~~v~L~C~v~G~P~---p~i~W~~~~~   48 (130)
T d1gxea_          14 RIPDTIVVVAGNKLRLDVPISGDPA---PTVIWQKAIT   48 (130)
T ss_dssp             CCCCEEEESSSSCCCCEEECCSBSC---CEEEEEEECC
T ss_pred             CCCCCEEEEcCCeEEEEEEEEEecC---CeEEEeeCCe
Confidence            4567889999999999999998876   4899999854

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.69  E-value=8.9e-05  Score=49.76  Aligned_cols=70  Identities=17%  Similarity=0.347  Sum_probs=45.6

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEee---------eecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVDM---------TESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~~---------~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.+.++. -....+.|.|.- +..+  .-.+         ++.-.+|+.+..|.     .|.|++++.+
T Consensus        11 ~~kPG~sl~LsC~~SG~s-~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~e   89 (118)
T d1nlbh1          11 LKKPGETVKISCKASGYT-FTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNE   89 (118)
T ss_dssp             EECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCCC-CCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccC
Confidence            567899999999997641 122357897732 1111  0001         11224688877532     4999999999


Q ss_pred             CCCcceEEE
Q psy12724        139 DGYKSYQCR  147 (167)
Q Consensus       139 D~~G~Y~C~  147 (167)
                      |+ +.|.|-
T Consensus        90 Dt-AvYYCA   97 (118)
T d1nlbh1          90 DT-ATYFCA   97 (118)
T ss_dssp             GC-EEEEEE
T ss_pred             cc-eEEEEe
Confidence            99 999994

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=4.9e-06  Score=54.90  Aligned_cols=42  Identities=14%  Similarity=0.245  Sum_probs=32.7

Q ss_pred             eeceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCc
Q psy12724         10 SQYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGG   53 (167)
Q Consensus        10 ~~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~   53 (167)
                      .+.+-..++++.+.+|+++.|+|.+.+.+.+  +.+.|.+++..
T Consensus         6 ~Pp~i~~~~~~~~~~G~~~~l~C~v~~~~p~--~~v~W~~~~~~   47 (115)
T d2crya1           6 GPPIISSTQTQHALHGEKGQIKCFIRSTPPP--DRIAWSWKENV   47 (115)
T ss_dssp             SSCCEEEECCCCCCTTSCCCCCEEECCSSCC--SEEEEESSSCE
T ss_pred             cCCEEecCCCEEEecCCEEEEEEEeecCCCe--eEEEEeeeeee
Confidence            3444456778889999999999999986554  47899998653

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=4.6e-05  Score=49.47  Aligned_cols=71  Identities=11%  Similarity=0.098  Sum_probs=40.3

Q ss_pred             CeEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         74 DEHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        74 ~~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      +..|..|++|+|.|..+.    .......+|++. ....... ...............|.+++.+|+ |.|+|.-...
T Consensus        12 ~~~v~~G~~VTL~C~~~~----~~~~f~L~k~g~-~~~~~~~-~~~~~~~~~~~a~F~l~~v~~~~~-G~Y~C~y~~~   82 (98)
T d1ugna2          12 SPVVNSGGNVTLQCDSQV----AFDGFILCKEGE-DEHPQCL-NSQPHARGSSRAIFSVGPVSPSRR-WWYRCYAYDS   82 (98)
T ss_dssp             CSEEETTCCEEEEEECSS----CCSEEEEEEC-------CEE-EC------CCEEEEEECCCCTTSC-EEEEEEEECT
T ss_pred             CCccCCCCcEEEEeCCCC----CCCEEEEEECCC-cCCcEee-eeEEcCCCceEEEEEeeecccCCC-eEEEEeeEcC
Confidence            346889999999999752    334556667763 2110000 000000000113699999999999 9999987543

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00015  Score=45.02  Aligned_cols=71  Identities=18%  Similarity=0.296  Sum_probs=45.3

Q ss_pred             EEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCcceE
Q psy12724         77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLTGET  156 (167)
Q Consensus        77 v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~~~~  156 (167)
                      ...|+.+.|.|..... ..+..--.|.|++ ..|....   ..+.     .-.+.|..  .+|+ |.|.|+..+.-.+++
T Consensus         9 ~~~~sk~~LtCnLt~s-~~~i~ghrW~K~g-kvl~ed~---~~~~-----~tey~V~~--~D~S-GeY~CVFl~~P~~~a   75 (80)
T d3b5ha2           9 EDLGSKILLTCSLNDS-ATEVTGHRWLKGG-VVLKEDA---LPGQ-----KTEFKVDS--DDQW-GEYSCVFLPEPMGTA   75 (80)
T ss_dssp             EEETTEEEEEEEEESC-SSCCCEEEEESSS-EEEECTT---CCCS-----EEEEEECG--GGCC-EEEEEEEESTTSCEE
T ss_pred             ccCCCCEEEEEECCCC-CCceeeeEEeeCC-EEccccC---CCCC-----ceEEEEec--CCCC-ceEEEEEcCCCccee
Confidence            4579999999998543 2234445999997 5664211   0111     12345553  6677 999999887766776


Q ss_pred             EEee
Q psy12724        157 RLSA  160 (167)
Q Consensus       157 ~l~~  160 (167)
                      .+.+
T Consensus        76 ~IeV   79 (80)
T d3b5ha2          76 NIQL   79 (80)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6655

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=2.6e-05  Score=50.73  Aligned_cols=59  Identities=12%  Similarity=0.132  Sum_probs=38.6

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecC--Cc------eE--------EEeeeEEEecCeE
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN--QD------FV--------VSQSYTVNIMDEH   76 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~--~~------~v--------~~g~y~c~~~~~~   76 (167)
                      ++....+.+|+++.|.|.+......  +.|.|+|++.....+..  .+      .+        .+|.|+|.+.|..
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~~--~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   82 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEHK--GTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSS   82 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGCS--SEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETT
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCCC--ceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCC
Confidence            4445677889999999988643322  47999998765432211  11      11        2799999987643

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=4.4e-05  Score=49.24  Aligned_cols=65  Identities=20%  Similarity=0.228  Sum_probs=41.0

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee---e-ecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM---T-ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~---~-~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .|+.+.|.|.+.++  .|.|.|+|++|+ ..+....   . ...++.|.+.  ..|.|.   ..+. ..|+|.+++..
T Consensus        15 s~~~~~L~C~~~g~--~P~~~V~W~~n~-~~~~~~~~~~~~~~~~g~y~v~--S~L~v~---~~~~-~~~tC~V~h~~   83 (95)
T d1dr9a2          15 TSNIRRIICSTSGG--FPEPHLSWLENG-EELNAINTTVSQDPETELYAVS--SKLDFN---MTTN-HSFMCLIKYGH   83 (95)
T ss_dssp             STTEEEEEEEEEEE--SSCEEEEEEESS-CEECCSEEEEEECTTTCCEEEE--EEEEEE---TTSC-EEEEEEEEETT
T ss_pred             CCCEEEEEEEECcc--cCCCEEEEecCC-cEecccceeeEecCCCccEEEE--EEEEcc---CCcc-ceEEEEEEecC
Confidence            46778999999874  488899999987 4442110   0 0112333332  235553   4566 89999999875

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.64  E-value=9.9e-05  Score=49.73  Aligned_cols=70  Identities=19%  Similarity=0.249  Sum_probs=45.5

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EE--------eeeecCCceEEEccCC-----eEEEeecCcCC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FV--------DMTESTDGKYLVLPSG-----ELHIRDVGPED  139 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~--------~~~~~~~~r~~~~~~g-----~L~I~~v~~~D  139 (167)
                      .+.+|+++.|.|.+.++. -..--+.|.|.. +..+  .-        .+.+.-.+|+.+..|.     .|.|++++.+|
T Consensus        11 ~vkPG~sl~LsC~~SG~~-~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eD   89 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYGGS-FSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD   89 (120)
T ss_dssp             EECTTSCEEEEEEEESSC-CSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEcccc-CccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccccc
Confidence            567899999999997641 112356898742 1111  00        0111224688887532     49999999999


Q ss_pred             CCcceEEE
Q psy12724        140 GYKSYQCR  147 (167)
Q Consensus       140 ~~G~Y~C~  147 (167)
                      + +.|.|-
T Consensus        90 t-A~YYCA   96 (120)
T d1dn0b1          90 T-AVYYCA   96 (120)
T ss_dssp             C-EEEEEE
T ss_pred             c-cEEEEE
Confidence            9 999994

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=5.1e-05  Score=49.47  Aligned_cols=68  Identities=18%  Similarity=0.269  Sum_probs=42.3

Q ss_pred             EeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCe---EEEeecCcCCCCcceEEEeeecC
Q psy12724         78 LKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGE---LHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        78 ~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~---L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..|+.++|.|.+.++.. +.-.++|+||+ ..+....    ........+|+   ...-.+..+|. +.|+|++.+..
T Consensus        17 ~~~~~~tL~C~~~gFyP-~~i~v~W~~ng-~~v~~~~----~~~~~~~~dgty~~~s~l~v~~~~~-~~ytC~V~H~s   87 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHP-SDIEVDLLKNG-ERIEKVE----HSDLSFSKDWSFYLLYYTEFTPTEK-DEYACRVNHVT   87 (100)
T ss_dssp             CTTSCEEEEEEEEEEBS-SCCEEEEEETT-EECTTCE----ECCCEECTTSCEEEEEEEEECCCSS-CCEEEEEECTT
T ss_pred             cCCCCEEEEEEECccCC-CCcEEEEEECC-EecCCcc----ccceecCCCCcEEEEEEeEECCCCC-CEEEEEEEeCC
Confidence            46889999999988732 23378999997 5542110    01112223443   22234456787 89999999875

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.60  E-value=1.3e-05  Score=53.14  Aligned_cols=35  Identities=17%  Similarity=0.450  Sum_probs=28.3

Q ss_pred             EEeEEEEEeCCcEEEEeec-CCCCCCcceeeEEeeCCCc
Q psy12724         16 QVYDVFVIKGNAAVFKCNL-PSFVSDHLDVVSWADTDGG   53 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a-~~~~~~~~~~i~W~k~~~~   53 (167)
                      ..++.++++|+++.|+|.+ .+.|.   |.+.|+|++..
T Consensus         8 ~~~~~t~~EG~~~~L~C~v~~G~P~---p~v~W~k~~~~   43 (111)
T d1biha2           8 KTHEKTPIEGRPFQLDCVLPNAYPK---PLITWKKRLSG   43 (111)
T ss_dssp             EEEEECCBTTEEEEECCCCCEEESC---CEEEEEEEETT
T ss_pred             ccccccccCCCeEEEEEEcccCCCC---CEEEEEeCCcc
Confidence            3567788999999999998 57765   48999998654

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=2.5e-05  Score=50.92  Aligned_cols=30  Identities=27%  Similarity=0.302  Sum_probs=24.0

Q ss_pred             EEEEeCCcEEEEeecC-CCCCCcceeeEEeeCCC
Q psy12724         20 VFVIKGNAAVFKCNLP-SFVSDHLDVVSWADTDG   52 (167)
Q Consensus        20 ~~v~~G~~~~l~C~a~-~~~~~~~~~i~W~k~~~   52 (167)
                      ..|.+|+++.|.|.+. +.|.   +.++|+|++.
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~---~~v~W~~~~~   42 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPP---SEYSWFKDGI   42 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSC---CEEEEEETTE
T ss_pred             CEEecCCeEEEEEEeecCCCC---CEEEEEeCCe
Confidence            3578999999999986 5554   4899999854

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=1.7e-05  Score=51.18  Aligned_cols=32  Identities=19%  Similarity=0.209  Sum_probs=25.1

Q ss_pred             EEEEEeCCcEEEEeecC-CCCCCcceeeEEeeCCCc
Q psy12724         19 DVFVIKGNAAVFKCNLP-SFVSDHLDVVSWADTDGG   53 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~-~~~~~~~~~i~W~k~~~~   53 (167)
                      ...|.+|+++.|.|.+. +.|.   |.+.|+|++..
T Consensus        11 ~~~v~~G~~v~l~C~~~~g~p~---p~v~W~~~~~~   43 (104)
T d1nbqa2          11 PSSATIGNRAVLTCSEQDGSPP---SEYTWFKDGIV   43 (104)
T ss_dssp             BSEEETTSCEEECCCCCSCBSC---CEEEEEETTCC
T ss_pred             CCEEecCCcEEEEEEeecCCCC---CEEEEEECCEE
Confidence            34578899999999985 5554   47999998654

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.56  E-value=0.00017  Score=48.26  Aligned_cols=75  Identities=15%  Similarity=0.279  Sum_probs=48.7

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EE-----eeeecCCceEEEccCC-----eEEEeecCc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FV-----DMTESTDGKYLVLPSG-----ELHIRDVGP  137 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~-----~~~~~~~~r~~~~~~g-----~L~I~~v~~  137 (167)
                      ..+.+|+++.|.|.+.|+. -..--+.|.|.. +..+      .+     .+.+.-.+|+.+..|.     .|.|++++.
T Consensus        10 ~~~kPg~sv~LsC~~SG~s-~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~   88 (117)
T d1iqdb1          10 EVKKPGASVKVSCKVSGYT-LTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRS   88 (117)
T ss_dssp             EEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcCCC-CCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCc
Confidence            3566799999999997641 122357898731 1111      10     0112235788877432     499999999


Q ss_pred             CCCCcceEEEeeec
Q psy12724        138 EDGYKSYQCRTKHR  151 (167)
Q Consensus       138 ~D~~G~Y~C~a~n~  151 (167)
                      +|+ +.|.|.....
T Consensus        89 eDt-AvYYCA~~~~  101 (117)
T d1iqdb1          89 DDT-AVYYCAVPDP  101 (117)
T ss_dssp             GGC-EEEEEEECSS
T ss_pred             Ccc-eEEEEeEcCC
Confidence            999 9999976653

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.53  E-value=0.00015  Score=48.45  Aligned_cols=71  Identities=20%  Similarity=0.331  Sum_probs=45.1

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeE--Eee---------eecCCceEEEccC---C--eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELF--VDM---------TESTDGKYLVLPS---G--ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~--~~~---------~~~~~~r~~~~~~---g--~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.+.++ .-....+.|.+.- +..+.  -.+         .+.-.+|+.+..|   .  .|.|++++.+
T Consensus        11 ~~kPG~sl~LsC~~SG~-s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~e   89 (115)
T d1f3dh1          11 LVKPGASVKVSCKASGY-SFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFE   89 (115)
T ss_dssp             EECTTCCEEEEEEEESS-CGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EECCCCCEEEEEEEccc-cCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcC
Confidence            46679999999998764 1123457887631 11111  011         1112357777642   2  4999999999


Q ss_pred             CCCcceEEEe
Q psy12724        139 DGYKSYQCRT  148 (167)
Q Consensus       139 D~~G~Y~C~a  148 (167)
                      |+ +.|.|-.
T Consensus        90 Dt-AvYYCAr   98 (115)
T d1f3dh1          90 DS-AVYYCAN   98 (115)
T ss_dssp             GC-EEEEEEE
T ss_pred             Cc-EEEEEec
Confidence            99 9999954

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00011  Score=47.57  Aligned_cols=66  Identities=12%  Similarity=0.128  Sum_probs=47.1

Q ss_pred             EEEeCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+.+|++++++|.+.    +|.- +.-|.+++ ..+.+     .+..+.-.+.--..|.+++.+|+ |.|.|.|....
T Consensus        16 ~v~eg~~~vIPC~vT----~P~~~VtL~~~~~-~~~~p-----~g~~v~~Dpk~Gf~I~~~~~~~~-g~y~C~a~~~g   82 (95)
T d1fltx_          16 HMTEGRELVIPCRVT----SPNITVTLKKFPL-DTLIP-----DGKRIIWDSRKGFIISNATYKEI-GLLTCEATVNG   82 (95)
T ss_dssp             EECTTSCEEECCCBS----CTTSCCEEEETTT-EEECC-----CSSSEEEETTTEEEESSCCGGGC-EEEEEEEEETT
T ss_pred             EEeCCCCEEEEccCC----CCCceeEEEeccC-CccCC-----CCCEEEECCCCCEEEeCCCcccC-eEEEEEEEECC
Confidence            566899999999995    3533 34566565 34432     23455555665699999999998 99999997653

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.52  E-value=8.8e-05  Score=48.33  Aligned_cols=68  Identities=22%  Similarity=0.400  Sum_probs=42.0

Q ss_pred             EEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         77 VLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        77 v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      +..|+.++|.|.+.++.. +.-.++|+||| ..+....     .++.++.|.+.  ..|   .+..+|. +.|+|.+.+.
T Consensus        14 ~~~~~~~tL~C~v~gFyP-~~i~v~W~~ng-~~v~~~~~~t~~~~~~dgtf~~~--s~l---~v~~~~~-~~ytC~V~H~   85 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFP-PVINITWLRNS-KSVADGVYETSFFVNRDYSFHKL--SYL---TFIPSDD-DIYDCKVEHW   85 (100)
T ss_dssp             CCTTSCEEEEEEEEEECS-SCCEEEEEESS-SBCCSSEEECCCEECTTSCEEEE--EEE---EECCCTT-CCEEEEEECT
T ss_pred             cccCCCEEEEEEEEeEEC-CCCEEEEEeCC-eeccCCceeeeeEECCCCCEEEE--EEe---EEcCCCC-CEEEEEEEEC
Confidence            346889999999987732 34578999997 4442111     01222333322  124   3445677 8999999987


Q ss_pred             C
Q psy12724        152 L  152 (167)
Q Consensus       152 ~  152 (167)
                      .
T Consensus        86 s   86 (100)
T d1muja1          86 G   86 (100)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.52  E-value=0.00026  Score=47.64  Aligned_cols=73  Identities=15%  Similarity=0.296  Sum_probs=46.9

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEee---------eecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVDM---------TESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~~---------~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.+.++. -....+.|+|.- +..+  .-.+         .+.-.+|+.+..+.     .|.|++++.+
T Consensus        11 ~vkpG~sl~LsC~~SG~s-~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~e   89 (120)
T d1pg7x1          11 LVKPGASVKISCKASGYS-FTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSN   89 (120)
T ss_dssp             EECTTCCEEEEEEEESSC-GGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EECCCCCEEEEEEEcccc-CCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCC
Confidence            466799999999987541 123467898742 1222  1011         11124577775422     4999999999


Q ss_pred             CCCcceEEEeee
Q psy12724        139 DGYKSYQCRTKH  150 (167)
Q Consensus       139 D~~G~Y~C~a~n  150 (167)
                      |+ +.|.|....
T Consensus        90 Dt-A~YYCAr~~  100 (120)
T d1pg7x1          90 DS-AVYYCARED  100 (120)
T ss_dssp             GC-EEEEEEEEC
T ss_pred             cc-eEEEeeecC
Confidence            99 999997653

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00015  Score=46.59  Aligned_cols=69  Identities=16%  Similarity=0.313  Sum_probs=41.1

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCe---EEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGE---LHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~---L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .++.++|.|.+.++.. +.-.++|+||| ..+....  .......-..+|.   ...-.+..+|. ..|+|.+.+..
T Consensus        14 ~~~~~tL~C~~~gFyP-~~i~v~W~~dg-~~~~~~~--~~~~~~~~~~~~t~~~~s~l~v~~~~~-~~ytC~V~H~s   85 (94)
T d1de4a1          14 TSSVTTLRCRALNYYP-QNITMKWLKDK-QPMDAKE--FEPKDVLPNGDGTYQGWITLAVPPGEE-QRYTCQVEHPG   85 (94)
T ss_dssp             CSSCEEEEEEEEEEBS-SCCEEEEEETT-EECCGGG--SCCCEEEECTTSCEEEEEEEEECTTCG-GGEEEEEECTT
T ss_pred             CCCCEEEEEEEeeEEC-CCCEEEEEECC-EECccCc--ccccceEeCCCceEEEEEEEEECCCCC-CEEEEEEEeCC
Confidence            4677999999987622 23378999997 4442110  0111122223332   23335566777 89999999874

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.51  E-value=0.00019  Score=48.28  Aligned_cols=73  Identities=21%  Similarity=0.384  Sum_probs=48.0

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEee--------eecCCceEEEccCC-----eEEEeecCcCC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVDM--------TESTDGKYLVLPSG-----ELHIRDVGPED  139 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~~--------~~~~~~r~~~~~~g-----~L~I~~v~~~D  139 (167)
                      .+.+|+++.|.|.+.++. -....+.|.|.- ++.+  .-.+        .+.-.+|+.+..|.     .|.|++++.+|
T Consensus        10 ~vkPg~sl~LsC~~SG~~-~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD   88 (119)
T d1kxvc_          10 TVPAGGSLRLSCAASGNT-LCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD   88 (119)
T ss_dssp             EECTTCCEEEEEEEESCT-TCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCCC-ccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence            466899999999997641 123467898742 1111  1001        11224688887543     59999999999


Q ss_pred             CCcceEEEeee
Q psy12724        140 GYKSYQCRTKH  150 (167)
Q Consensus       140 ~~G~Y~C~a~n  150 (167)
                      + +.|.|....
T Consensus        89 t-A~YYCAr~~   98 (119)
T d1kxvc_          89 T-AMYYCKPSL   98 (119)
T ss_dssp             C-EEEEEEEEE
T ss_pred             c-ceEeeeecc
Confidence            9 999996543

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.50  E-value=0.00021  Score=47.64  Aligned_cols=83  Identities=20%  Similarity=0.350  Sum_probs=51.5

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EE-----eeeecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FV-----DMTESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~-----~~~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.+.++. -....+.|.|.- +..+      .+     .+++.-.+|+.+..+.     .|.|++++.+
T Consensus        11 ~vkpG~sl~LsC~~SG~~-~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~e   89 (114)
T d1indh1          11 SVKPGGSLKLSCAASGFT-LSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSE   89 (114)
T ss_dssp             EECTTCCEEEEEEEESSC-GGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEECccC-ccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccC
Confidence            567899999999997641 123457888732 1111      11     0011124688877532     4999999999


Q ss_pred             CCCcceEEEeeecC--cceEEEee
Q psy12724        139 DGYKSYQCRTKHRL--TGETRLSA  160 (167)
Q Consensus       139 D~~G~Y~C~a~n~~--~~~~~l~~  160 (167)
                      |+ +.|.|-.....  ..-|.++|
T Consensus        90 Dt-AvYYCA~~~~dyWGqGT~VTV  112 (114)
T d1indh1          90 DT-ALYFCASHRFVHWGHGTLVTV  112 (114)
T ss_dssp             GC-EEEEEECGGGCSBCCCEEEEE
T ss_pred             cc-cEEEECCCCCCccCCCEEEEE
Confidence            99 99999643321  44555555

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.50  E-value=0.00031  Score=45.43  Aligned_cols=67  Identities=19%  Similarity=0.349  Sum_probs=41.1

Q ss_pred             EeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         78 LKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        78 ~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..++.++|.|.+.++.. +.-.++|++|+ ..+....     .++.++.|.+.  ..|.   +..++. ..|+|.+.+..
T Consensus        15 ~~~~~~tL~C~~~gFyP-~~i~v~W~~ng-~~~~~~~~~~~~~~~~dgty~~~--s~L~---v~~~~~-~~ytC~V~H~s   86 (98)
T d1hdmb1          15 NTREPVMLACYVWGFYP-AEVTITWRKNG-KLVMHSSAHKTAQPNGDWTYQTL--SHLA---LTPSYG-DTYTCVVEHIG   86 (98)
T ss_dssp             SSSCSEEEEEEEEEEBS-SCCEEEEEETT-EECCCCCSBCCCEECSSSCEEEE--EEEE---ECCCTT-CCEEEEEECTT
T ss_pred             cCCCcEEEEEEEEEEEC-CCCEEEEEECC-EeccCCeEeCceEECCCCCEEEE--EEeE---cCCCCC-CEEEEEEEeCC
Confidence            35778999999988732 34578999997 4442111     01122333321  1244   456676 79999999875

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.44  E-value=0.00038  Score=46.52  Aligned_cols=72  Identities=18%  Similarity=0.329  Sum_probs=47.1

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--E--------EeeeecCCceEEEccCC-----eEEEeecCcCC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--F--------VDMTESTDGKYLVLPSG-----ELHIRDVGPED  139 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~--------~~~~~~~~~r~~~~~~g-----~L~I~~v~~~D  139 (167)
                      .+.+|+++.|.|.+.|+.- ..--+.|.|.- +..+  .        ..+++.-.+|+.+..|.     .|.|++++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~~~-~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eD   89 (117)
T d1c5db1          11 LVQPSQTLSLTCTVSGFPL-TTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTED   89 (117)
T ss_dssp             EECTTSCEEEEEEECSSCT-TTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCCCc-cCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCc
Confidence            5678999999999986521 12357888731 1121  1        01111234688877532     49999999999


Q ss_pred             CCcceEEEee
Q psy12724        140 GYKSYQCRTK  149 (167)
Q Consensus       140 ~~G~Y~C~a~  149 (167)
                      . +.|.|-..
T Consensus        90 t-AvYYCAr~   98 (117)
T d1c5db1          90 T-AIYFCTRE   98 (117)
T ss_dssp             C-EEEEEEEC
T ss_pred             c-eEEEEecc
Confidence            9 99999654

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.44  E-value=0.00053  Score=45.80  Aligned_cols=74  Identities=20%  Similarity=0.387  Sum_probs=47.5

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EE-----eeeecCCceEEEccCC-----eEEEeecCc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FV-----DMTESTDGKYLVLPSG-----ELHIRDVGP  137 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~-----~~~~~~~~r~~~~~~g-----~L~I~~v~~  137 (167)
                      ..+.+|+++.|.|.++++. -..--+.|.|.- ++.+      .+     .+.+.-.+|+.+..|.     .|+|++++.
T Consensus         9 ~~~kPG~sl~LsC~~SG~~-~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~   87 (117)
T d1um5h1           9 VLVKPGGSVKMSCKASEYT-LTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTS   87 (117)
T ss_dssp             EEECTTCCEEEEEEESSCC-CSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcccc-CCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCC
Confidence            3567899999999998641 123467897742 1111      10     0011224678776432     499999999


Q ss_pred             CCCCcceEEEeee
Q psy12724        138 EDGYKSYQCRTKH  150 (167)
Q Consensus       138 ~D~~G~Y~C~a~n  150 (167)
                      +|+ +.|.|....
T Consensus        88 eDt-AvYYCAr~~   99 (117)
T d1um5h1          88 EDS-AVYYCARSS   99 (117)
T ss_dssp             GGC-EEEEEEEEE
T ss_pred             Ccc-eEEEEeecc
Confidence            999 999996543

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.44  E-value=0.00037  Score=46.55  Aligned_cols=73  Identities=19%  Similarity=0.282  Sum_probs=47.6

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------E-----EeeeecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------F-----VDMTESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~-----~~~~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.++|+. =..-.+.|.|.- +..+      .     ..+++.-.+|+.+..|.     .|.|++++.+
T Consensus        11 ~vkpg~sl~LsC~~SG~~-~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~e   89 (117)
T d1jpth1          11 LVQPGGSLRLSCAASGFN-IKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAE   89 (117)
T ss_dssp             EECTTCCEEEEEEEESSC-GGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCCC-CcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCC
Confidence            566899999999998641 123467887742 1111      1     01111234778877542     4999999999


Q ss_pred             CCCcceEEEeee
Q psy12724        139 DGYKSYQCRTKH  150 (167)
Q Consensus       139 D~~G~Y~C~a~n  150 (167)
                      |. +.|.|....
T Consensus        90 DT-AvYYCAr~~  100 (117)
T d1jpth1          90 DT-AVYYCARDT  100 (117)
T ss_dssp             GC-EEEEEEEEC
T ss_pred             Cc-eEEEEeecC
Confidence            99 999996543

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.44  E-value=0.00049  Score=46.06  Aligned_cols=74  Identities=27%  Similarity=0.398  Sum_probs=48.2

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EE-----eeeecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FV-----DMTESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~-----~~~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.+.|+. -..-.+.|.|.- +..+      .+     .+++.-.+|+.+..|.     .|.|++++.+
T Consensus        11 ~vkpg~sl~LsC~~SG~~-~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (118)
T d2fbjh1          11 LVQPGGSLKLSCAASGFD-FSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSE   89 (118)
T ss_dssp             EECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEECCcc-ccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCC
Confidence            566899999999997651 122356887631 1111      10     0111234688887643     4999999999


Q ss_pred             CCCcceEEEeeec
Q psy12724        139 DGYKSYQCRTKHR  151 (167)
Q Consensus       139 D~~G~Y~C~a~n~  151 (167)
                      |+ +.|.|.....
T Consensus        90 Dt-AvYYCAr~~~  101 (118)
T d2fbjh1          90 DT-ALYYCARLHY  101 (118)
T ss_dssp             GC-EEEEEEEEET
T ss_pred             cc-eEEEeeEecC
Confidence            99 9999976553

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.43  E-value=0.00018  Score=48.35  Aligned_cols=71  Identities=20%  Similarity=0.379  Sum_probs=44.7

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEee---------eecCCceEEEccC---C--eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVDM---------TESTDGKYLVLPS---G--ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~~---------~~~~~~r~~~~~~---g--~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.+.++.- -..-+.|.|.- +..+  .-.+         .+.-.+|+.+..+   .  .|.|++++.+
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~-~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~e   89 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTF-TTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSD   89 (119)
T ss_dssp             EECTTEEEEEEEEEETCCS-SSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGG
T ss_pred             eECCCCCEEEEEEEeccCC-CCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCcc
Confidence            5667999999999875411 12347898741 1121  1111         0112367777532   2  4999999999


Q ss_pred             CCCcceEEEe
Q psy12724        139 DGYKSYQCRT  148 (167)
Q Consensus       139 D~~G~Y~C~a  148 (167)
                      |+ +.|.|-.
T Consensus        90 Ds-AvYYCA~   98 (119)
T d1qnzh_          90 DS-AVYYCAI   98 (119)
T ss_dssp             GC-EEEEEEE
T ss_pred             ce-eEEEEEE
Confidence            99 9999954

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.42  E-value=0.00033  Score=46.98  Aligned_cols=72  Identities=17%  Similarity=0.295  Sum_probs=46.9

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EE-----eeeecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FV-----DMTESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~-----~~~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.+.|+ .-..-.+.|.|.- ++.+      ..     .+++.-.+|+.+..|.     .|.|++++.+
T Consensus        11 ~~kpg~sl~LsC~~SG~-~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~e   89 (119)
T d1rz7h1          11 VKKPGATVKISCKASGY-TFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSE   89 (119)
T ss_dssp             EECTTCCEEEEEEEESS-CGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCC-CCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCcc
Confidence            45679999999999864 1123467897632 1111      10     0111224688877532     4999999999


Q ss_pred             CCCcceEEEee
Q psy12724        139 DGYKSYQCRTK  149 (167)
Q Consensus       139 D~~G~Y~C~a~  149 (167)
                      |. +.|.|...
T Consensus        90 DT-AvYYCAr~   99 (119)
T d1rz7h1          90 DT-AVYYCAAD   99 (119)
T ss_dssp             GC-EEEEEEEC
T ss_pred             cc-eEEEEeec
Confidence            99 99999654

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=0.0003  Score=45.42  Aligned_cols=66  Identities=21%  Similarity=0.411  Sum_probs=40.0

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEe----eeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVD----MTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~----~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .|+.++|.|.+.++.. +.-.++|++|+ ..+...    ..++.++.|.+     ...-.+..+|. +.|+|.+.+..
T Consensus        17 ~~~~~tL~C~v~gf~P-~~i~V~W~~~g-~~~~~~~~~~~~~~~dgtf~~-----~s~l~v~~~~~-~~ytC~V~H~s   86 (99)
T d1lk2b_          17 NGKPNILNCYVTQFHP-PHIEIQMLKNG-KKIPKVEMSDMSFSKDWSFYI-----LAHTEFTPTET-DTYACRVKHDS   86 (99)
T ss_dssp             TTSCEEEEEEEEEEBS-SCCEEEEEETT-EECTTCEEEEEEECTTCCEEE-----EEEEEECCCSS-CCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEEEC-CCcEEEEeeCC-eecCCcEECceeECCCCCEEE-----EEEeEecCcCC-CEEEEEEEeCC
Confidence            5888999999988732 23468999997 443110    00112222322     22223456777 89999999875

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.39  E-value=0.0005  Score=46.55  Aligned_cols=73  Identities=19%  Similarity=0.328  Sum_probs=46.4

Q ss_pred             EEEeCCcEEEEeeeCCc-cCCcceeEEEEeC--CCee-eEEeee--------ecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSF-VADYVAVESWISD--QGEE-LFVDMT--------ESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~-~~~p~p~i~W~k~--~~~~-l~~~~~--------~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.+.|+ +.+....+.|.|.  +..+ ..-.+.        +.-.+|+.+..+.     .|.|++++.+
T Consensus        11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~e   90 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTS   90 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccccc
Confidence            45679999999998753 1233446789763  2111 111110        1124578776432     5999999999


Q ss_pred             CCCcceEEEee
Q psy12724        139 DGYKSYQCRTK  149 (167)
Q Consensus       139 D~~G~Y~C~a~  149 (167)
                      |+ +.|.|-..
T Consensus        91 Dt-AvYyCAr~  100 (126)
T d1etzb1          91 DT-ATYHCARR  100 (126)
T ss_dssp             GC-EEEEEEEE
T ss_pred             cc-ceEEEEEe
Confidence            99 99999754

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.36  E-value=0.0002  Score=47.33  Aligned_cols=74  Identities=19%  Similarity=0.332  Sum_probs=47.6

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EE-------eeeecCCceEEEccCC-----eEEEeec
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FV-------DMTESTDGKYLVLPSG-----ELHIRDV  135 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~-------~~~~~~~~r~~~~~~g-----~L~I~~v  135 (167)
                      ..+.+|+++.|.|.++|+. -..--+.|.|.- +..+      .+       .+++.-.+|+++..|.     .|.|+++
T Consensus        10 ~~vkPG~Sl~LsC~~SG~t-~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL   88 (109)
T d2ck0h1          10 GLVQPRGSLKLSCAASGFT-FNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNL   88 (109)
T ss_dssp             EEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CeECCCCCeEEEEEECCCc-ccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCC
Confidence            3567899999999997641 123467898732 1111      11       0111123588877532     4999999


Q ss_pred             CcCCCCcceEEEeee
Q psy12724        136 GPEDGYKSYQCRTKH  150 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n  150 (167)
                      +.+|+ +.|.|-..+
T Consensus        89 ~~eDT-AvYYCAr~~  102 (109)
T d2ck0h1          89 KTEDT-GIYYCVRGR  102 (109)
T ss_dssp             CGGGC-EEEEEEEEC
T ss_pred             CHhHC-EEEEEEEcC
Confidence            99999 999997543

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.36  E-value=0.00019  Score=49.13  Aligned_cols=74  Identities=22%  Similarity=0.436  Sum_probs=47.6

Q ss_pred             EEEeCCcEEEEeeeCCcc-CCcceeEEEEeCC-Ceee--EEee--------eecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFV-ADYVAVESWISDQ-GEEL--FVDM--------TESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~-~~p~p~i~W~k~~-~~~l--~~~~--------~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.+.++. .+...-+.|.|.. +..+  .-.+        .+.-.+|+.+..|.     .|.|++++.+
T Consensus        11 ~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~e   90 (132)
T d1tjgh1          11 LVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPV   90 (132)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCcc
Confidence            466799999999987542 2333467898732 1111  1111        11124688776432     3999999999


Q ss_pred             CCCcceEEEeee
Q psy12724        139 DGYKSYQCRTKH  150 (167)
Q Consensus       139 D~~G~Y~C~a~n  150 (167)
                      |+ +.|.|-...
T Consensus        91 Dt-AvYYCAr~~  101 (132)
T d1tjgh1          91 DT-ATYFCAHRR  101 (132)
T ss_dssp             GC-EEEEEEEEC
T ss_pred             cc-eEEEEEEec
Confidence            99 999997543

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.35  E-value=0.00054  Score=46.14  Aligned_cols=84  Identities=19%  Similarity=0.381  Sum_probs=51.7

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEee---------eecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVDM---------TESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~~---------~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.+.|+.= -.--+.|.|.- ++.+  .-.+         ++.-.+|+.+..|.     .|.|++++.+
T Consensus        11 lvkPG~sl~LsC~~SG~s~-~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~e   89 (123)
T d1mqkh_          11 LVQPGGSLKLSCAASGFTF-SSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSE   89 (123)
T ss_dssp             EECTTCCEEEEEEEESSCG-GGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEECcccC-cCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccC
Confidence            5668999999999976411 12356887632 1111  0001         11124678876432     4999999999


Q ss_pred             CCCcceEEEeeecC------cceEEEeee
Q psy12724        139 DGYKSYQCRTKHRL------TGETRLSAT  161 (167)
Q Consensus       139 D~~G~Y~C~a~n~~------~~~~~l~~~  161 (167)
                      |. +.|.|-.....      ..-|+++|.
T Consensus        90 Dt-AvYYCAr~~~~~~~d~WG~GT~VTVs  117 (123)
T d1mqkh_          90 DT-AMYYCVRHEYYYAMDYWGQGTTVTVS  117 (123)
T ss_dssp             GC-EEEEEEEEETTTEEEEECCCEEEEEC
T ss_pred             cc-cceeEEecCCCccccccCCCEEEEEe
Confidence            99 99999655432      334555554

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.35  E-value=0.00045  Score=46.49  Aligned_cols=73  Identities=22%  Similarity=0.344  Sum_probs=46.4

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEee---------eecCCceEEEccC-----CeEEEeecCc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVDM---------TESTDGKYLVLPS-----GELHIRDVGP  137 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~~---------~~~~~~r~~~~~~-----g~L~I~~v~~  137 (167)
                      ..+.+|+++.|.|.+.++. --..-+.|.|.. +..+  .-.+         .+.-.+|+.+..+     ..|.|++++.
T Consensus        10 ~~~kpG~sv~LsC~~SG~~-~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~   88 (121)
T d1j05b_          10 ELVEPGASVKLSCTASGFN-IKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTS   88 (121)
T ss_dssp             EEECTTCCEEEEEEEESSC-GGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEecCC-CCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCc
Confidence            3566899999999987641 123467897632 1211  1001         1112357877642     2499999999


Q ss_pred             CCCCcceEEEee
Q psy12724        138 EDGYKSYQCRTK  149 (167)
Q Consensus       138 ~D~~G~Y~C~a~  149 (167)
                      +|+ +.|.|...
T Consensus        89 eDt-AvYYCAr~   99 (121)
T d1j05b_          89 EDT-AVYYCAPF   99 (121)
T ss_dssp             GGC-EEEEEEEE
T ss_pred             Ccc-eEEEeEee
Confidence            999 99999654

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.35  E-value=0.00022  Score=46.44  Aligned_cols=67  Identities=19%  Similarity=0.345  Sum_probs=40.8

Q ss_pred             EeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         78 LKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        78 ~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..|+.++|.|.+.++.. ..-.++|++|| ..+....     .++.++.|.+.  ..|.|   ..++. ..|+|.+.+..
T Consensus        17 ~~~~~~tL~C~v~gF~P-~~i~v~W~~ng-~~~~~~~~~~~~~~~~dgty~~~--S~L~v---~~~~~-~~ytC~V~H~s   88 (101)
T d1fnga1          17 NLGEPNILICFIDKFSP-PVVNVTWLRNG-RPVTEGVSETVFLPRDDHLFRKF--HYLTF---LPSTD-DFYDCEVDHWG   88 (101)
T ss_dssp             CTTSCEEEEEEEEEEBS-SCCEEEEEETT-EEECSSEEECCCEECSSSCEEEE--EEEEE---CCCTT-CCEEEEEECTT
T ss_pred             cCCCCEEEEEEEEeEEC-CCCEEEEEECC-eecCCCcEeCeEEECCCCcEEEE--EEeEE---cCCCC-CEEEEEEEECC
Confidence            35778899999988732 23478999997 4542111     01223333332  13444   44666 78999999875

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.35  E-value=0.0005  Score=45.87  Aligned_cols=73  Identities=19%  Similarity=0.286  Sum_probs=46.7

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEee--------eecCCceEEEccCC-----eEEEeecCcCC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVDM--------TESTDGKYLVLPSG-----ELHIRDVGPED  139 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~~--------~~~~~~r~~~~~~g-----~L~I~~v~~~D  139 (167)
                      .+.+|+++.|.|.++++. -..--+.|.|.. +..+  .-.+        .+.-.+|+.+..|.     .|.|++++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~~-~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eD   89 (116)
T d7fabh1          11 LVRPSQTLSLTCTVSGTS-FDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAAD   89 (116)
T ss_dssp             EECTTSCEEEEEEEESSC-STTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEeeec-CCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccccc
Confidence            456799999999997641 123457888732 1111  0000        11224677776432     59999999999


Q ss_pred             CCcceEEEeee
Q psy12724        140 GYKSYQCRTKH  150 (167)
Q Consensus       140 ~~G~Y~C~a~n  150 (167)
                      + +.|.|....
T Consensus        90 t-AvYyCAr~~   99 (116)
T d7fabh1          90 T-AVYYCARNL   99 (116)
T ss_dssp             C-EEEEEEEEC
T ss_pred             c-eEEEeeeec
Confidence            9 999996543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.34  E-value=0.00047  Score=45.99  Aligned_cols=74  Identities=15%  Similarity=0.308  Sum_probs=47.4

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEe--------eeecCCceEEEccCC-----eEEEeecCcCC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVD--------MTESTDGKYLVLPSG-----ELHIRDVGPED  139 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~--------~~~~~~~r~~~~~~g-----~L~I~~v~~~D  139 (167)
                      .+.+|+++.|.|.+.|+.- -.--+.|.|.- +..+  .-.        +.+.-.+|+.+..|.     .|.|++++.+|
T Consensus        11 ~vkPg~sl~LsC~~SG~s~-~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eD   89 (116)
T d1a2yb_          11 LVAPSQSLSITCTVSGFSL-TGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDD   89 (116)
T ss_dssp             EECTTSCEEEEEEEESSCT-TSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEccccc-CCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeecc
Confidence            5678999999999976411 12357887742 1111  100        111224678776432     49999999999


Q ss_pred             CCcceEEEeeec
Q psy12724        140 GYKSYQCRTKHR  151 (167)
Q Consensus       140 ~~G~Y~C~a~n~  151 (167)
                      . +.|.|-....
T Consensus        90 T-AvYYCAr~~~  100 (116)
T d1a2yb_          90 T-ARYYCARERD  100 (116)
T ss_dssp             C-EEEEEEEESS
T ss_pred             c-eEEEEEEeCC
Confidence            9 9999975543

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.33  E-value=0.00075  Score=45.55  Aligned_cols=74  Identities=23%  Similarity=0.453  Sum_probs=48.0

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEee---------eecCCceEEEccCC-----eEEEeecCc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVDM---------TESTDGKYLVLPSG-----ELHIRDVGP  137 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~~---------~~~~~~r~~~~~~g-----~L~I~~v~~  137 (167)
                      ..+.+|+++.|.|.+.++. --...+.|.|.- ++.+  .-.+         ++.-.+|+.+..|.     .|+|++++.
T Consensus        10 ~lvkpg~sl~LsC~~SG~~-~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~   88 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFR-ISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV   88 (125)
T ss_dssp             EEEETTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEeECCcc-CcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCC
Confidence            3567899999999997641 123457898732 1122  1011         11124688887532     499999999


Q ss_pred             CCCCcceEEEeee
Q psy12724        138 EDGYKSYQCRTKH  150 (167)
Q Consensus       138 ~D~~G~Y~C~a~n  150 (167)
                      +|. +.|.|....
T Consensus        89 eDT-AvYYCAr~~  100 (125)
T d1op3h1          89 EDT-AIYYCARKG  100 (125)
T ss_dssp             GGC-EEEEEEEEC
T ss_pred             ccc-eeEeEeecc
Confidence            999 999997643

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.33  E-value=0.00018  Score=47.51  Aligned_cols=71  Identities=21%  Similarity=0.416  Sum_probs=44.7

Q ss_pred             EEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EE--------eeeecCCceEEEccCC-----eEEEeecCcCCC
Q psy12724         77 VLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FV--------DMTESTDGKYLVLPSG-----ELHIRDVGPEDG  140 (167)
Q Consensus        77 v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~--------~~~~~~~~r~~~~~~g-----~L~I~~v~~~D~  140 (167)
                      +.+|+++.|.|.++++.- -...+.|.|.- ++.+  .-        .+.+.-.+|+.+..+.     .|+|++++.+|+
T Consensus         5 vkPG~sl~LsC~~SG~~~-~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTF-SGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCTTCCEEEEECCCC------CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             ecCCCCcEEEEEECCCCc-cCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            457999999999986411 12356888742 1111  00        0111224688887543     499999999999


Q ss_pred             CcceEEEee
Q psy12724        141 YKSYQCRTK  149 (167)
Q Consensus       141 ~G~Y~C~a~  149 (167)
                       +.|-|...
T Consensus        84 -AvYyCA~~   91 (107)
T d1sjva_          84 -AVYYCYTH   91 (107)
T ss_dssp             -SEEEEEEC
T ss_pred             -eeeeEecc
Confidence             99999654

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00026  Score=46.11  Aligned_cols=51  Identities=14%  Similarity=0.155  Sum_probs=35.3

Q ss_pred             EEEEeCCcEEEEe------ecCCCCCCcceeeEEeeCCCceeeecCCce------E--------EEeeeEEEecC
Q psy12724         20 VFVIKGNAAVFKC------NLPSFVSDHLDVVSWADTDGGQYQIDNQDF------V--------VSQSYTVNIMD   74 (167)
Q Consensus        20 ~~v~~G~~~~l~C------~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~------v--------~~g~y~c~~~~   74 (167)
                      ..+..|.++.|.|      .+.+.+.   |.|.|+|+ ++.+..++.+.      +        .+|.|+|.+.+
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~---P~i~W~kd-g~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   79 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNEL---PKLQWYKD-CKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASY   79 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBC---CCCEEEET-TEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCC---CEEEEEEC-CccccCCCcEEEecCCEEEEcccccccCcEEEEEEEE
Confidence            5678999999999      4555554   57999997 44554333221      1        27999999865

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.29  E-value=0.00095  Score=45.51  Aligned_cols=86  Identities=19%  Similarity=0.322  Sum_probs=54.0

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EE-----eeeecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FV-----DMTESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~-----~~~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.+.|+.= -..-+.|.|.- +..+      .+     .+++.-.+|+.+..|.     .|.|++++.+
T Consensus        11 lvkPG~Sl~LsC~~SG~s~-~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~e   89 (135)
T d1ieha_          11 LVQPGGSLRVSCAASGFTF-SSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSE   89 (135)
T ss_dssp             EECTTCEEEEEEEEESSCT-TTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSS
T ss_pred             eECCCCCeEEEEEEcCCCC-cCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcc
Confidence            5678999999999976411 12357887631 1111      11     0111224788887542     5999999999


Q ss_pred             CCCcceEEEeeecC-----cceEEEeeeCC
Q psy12724        139 DGYKSYQCRTKHRL-----TGETRLSATKG  163 (167)
Q Consensus       139 D~~G~Y~C~a~n~~-----~~~~~l~~~~~  163 (167)
                      |. +.|.|......     ..-|.++|+..
T Consensus        90 DT-AvYYCAr~~~~~~d~WGqGT~VTVsSa  118 (135)
T d1ieha_          90 DT-AVYYCAKYSGGALDAWGQGTQVTVSSQ  118 (135)
T ss_dssp             SC-EEEEEEEBSSSSBCCCSCCEEEEECSS
T ss_pred             cc-eeeEEEEecCCccceeCCCEEEEEECC
Confidence            99 99999765332     44556666443

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.29  E-value=0.00049  Score=46.28  Aligned_cols=73  Identities=23%  Similarity=0.378  Sum_probs=46.9

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EE-----eeeecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FV-----DMTESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~-----~~~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.+.++. --.--+.|.|.- +..+      .+     .+.+.-.+|+.+..|.     .|.|++++.+
T Consensus        11 ~vkpg~sl~LsC~~SG~s-~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~e   89 (121)
T d1ol0a_          11 LVQPGGSLRLSCAASGFT-FSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAE   89 (121)
T ss_dssp             EECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCcC-CcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccc
Confidence            456899999999997641 012356887632 1111      10     0111224688877543     4999999999


Q ss_pred             CCCcceEEEeee
Q psy12724        139 DGYKSYQCRTKH  150 (167)
Q Consensus       139 D~~G~Y~C~a~n  150 (167)
                      |+ +.|.|....
T Consensus        90 Dt-AvYYCAr~~  100 (121)
T d1ol0a_          90 DT-AVYYCAREP  100 (121)
T ss_dssp             GC-EEEEEEECC
T ss_pred             cc-eEEEEEEec
Confidence            99 999996543

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.28  E-value=0.00026  Score=47.65  Aligned_cols=74  Identities=19%  Similarity=0.358  Sum_probs=47.1

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeE--E-----------eeeecCCceEEEccCC-----eEEEeec
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELF--V-----------DMTESTDGKYLVLPSG-----ELHIRDV  135 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~--~-----------~~~~~~~~r~~~~~~g-----~L~I~~v  135 (167)
                      ..+.+|+++.|.|.++|+.- ..--+.|.|.- +..+.  -           .+++.-.+|+.+..|.     .|.|+++
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~-~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L   88 (121)
T d1nfdf1          10 DLVQPGSSLKVSCAASGFTF-SDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRL   88 (121)
T ss_dssp             EEECTTCEEEEEEEEESSCG-GGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESC
T ss_pred             ceECCCCCEEEEEEEcCCCC-cCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceeccc
Confidence            35678999999999987521 23457898731 11210  0           0011123566665432     4999999


Q ss_pred             CcCCCCcceEEEeee
Q psy12724        136 GPEDGYKSYQCRTKH  150 (167)
Q Consensus       136 ~~~D~~G~Y~C~a~n  150 (167)
                      +.+|. +.|.|-...
T Consensus        89 ~~eDT-AvYYCAr~~  102 (121)
T d1nfdf1          89 RVDDT-AIYYCTRAG  102 (121)
T ss_dssp             CGGGC-EECEEEEEE
T ss_pred             CCCcc-eEEEEeccC
Confidence            99999 999996543

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.28  E-value=0.0002  Score=46.23  Aligned_cols=69  Identities=16%  Similarity=0.292  Sum_probs=38.2

Q ss_pred             EeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCe---EEEeecCcCCCCcceEEEeeecC
Q psy12724         78 LKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGE---LHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        78 ~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~---L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..|+.++|.|.+.++.. +.-.++|++|| ..+.....   .+......+|.   +.+-.+..+|. ..|+|.+.+..
T Consensus        16 ~~~~~~tL~C~v~~F~P-~~i~v~W~~~g-~~~~~~~~---~~~~~~~~dgtf~~~s~l~~~~~~~-~~ytC~V~H~s   87 (98)
T d1d5mb1          16 PLQHHNLLVCSVNGFYP-GSIEVRWFRNG-QEEKTGVV---STGLIQNGDWTFQTLVMLETVPRSG-EVYTCQVEHPS   87 (98)
T ss_dssp             -----CEEEEEEEEEBS-SCCEEEEEETT-EECCSSEE---ECCCEECSSSCEEEEEEEECCCCTT-CEEEEEEECTT
T ss_pred             ccCCceEEEEEEeeeEC-CCcEEEEEECC-EEcCCCCE---ECeEEeCCCcEEEEEEEeeEcCCCC-CEEEEEEEECC
Confidence            34677889999988732 33478999997 44321100   00011122332   23345667787 89999999875

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00015  Score=46.82  Aligned_cols=30  Identities=23%  Similarity=0.382  Sum_probs=25.1

Q ss_pred             EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      ...|..|+++.|.|.|.+.|.+   .|.|.+++
T Consensus        11 ~i~v~~G~~v~l~C~v~g~P~p---~i~W~~~g   40 (107)
T d1iray3          11 TMEVDLGSQIQLICNVTGQLSD---IAYWKWNG   40 (107)
T ss_dssp             EEECCTTCCEEEEEEEEECTTC---EEEEEETT
T ss_pred             EEEEeCCCEEEEEEEeccCCCC---eEEEEECC
Confidence            3556789999999999998864   79999974

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.26  E-value=0.00068  Score=44.28  Aligned_cols=71  Identities=18%  Similarity=0.318  Sum_probs=41.7

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EEe-----eeecCCceEEEccCC-----eEEEeecCcCCCC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FVD-----MTESTDGKYLVLPSG-----ELHIRDVGPEDGY  141 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~~-----~~~~~~~r~~~~~~g-----~L~I~~v~~~D~~  141 (167)
                      +|+++.|.|.++++.= ..--+.|.|.- ++.+      .+.     +++.-.+|+.+..+.     .|+|++++.+|. 
T Consensus         1 PG~sl~LsC~~SG~s~-~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDT-   78 (103)
T d1oari_           1 PGASVKLSCKASGYTF-TSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDS-   78 (103)
T ss_dssp             CCCCEEEEEECCSSCS-TTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CC-
T ss_pred             CCCCeEEEEEEECCCh-hcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeecccccc-
Confidence            4899999999986411 12357898632 1111      110     011234788877543     599999999999 


Q ss_pred             cceEEEeeec
Q psy12724        142 KSYQCRTKHR  151 (167)
Q Consensus       142 G~Y~C~a~n~  151 (167)
                      +.|-|.....
T Consensus        79 AvYYCAr~~~   88 (103)
T d1oari_          79 AVYYCARMWY   88 (103)
T ss_dssp             SEEEEEEEEC
T ss_pred             EEEEeEEECC
Confidence            9999976543

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00013  Score=46.22  Aligned_cols=64  Identities=17%  Similarity=0.318  Sum_probs=41.7

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCc-CCCCcceEEEeee
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGP-EDGYKSYQCRTKH  150 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~-~D~~G~Y~C~a~n  150 (167)
                      .-+.|.+|+|.|.-.     +...|.|.|++ ..+...    .+..-.......|.+.+... +++ |.|.|.+..
T Consensus         6 VsISGTtV~LTCP~~-----~~~~i~W~~n~-~~~~~~----~~~~~~~~~~~~l~L~dfSe~e~s-GyY~C~~~~   70 (91)
T d1xiwa_           6 VSISGTTVILTCPQY-----PGSEILWQHND-KNIGGD----EDDKNIGSDEDHLSLKEFSELEQS-GYYVCYPRG   70 (91)
T ss_dssp             EEEETTEEEEECSSC-----TTSCEEEEETT-EEESSS----CSCTTEEEETTEEEETTCCHHHHC-EEEEEEETT
T ss_pred             EEEeCCEEEEECCCC-----CCCceeeeecc-ccccCC----CcccccccccceEEecccCccccC-ceEEEEcCC
Confidence            346799999999632     44569999997 444210    11111112234688888877 788 999999854

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.24  E-value=0.00058  Score=45.82  Aligned_cols=73  Identities=19%  Similarity=0.292  Sum_probs=46.6

Q ss_pred             EEEeCCcEEEEeeeCCcc-CCcceeEEEEeCC-CeeeE--Eeee--------ecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFV-ADYVAVESWISDQ-GEELF--VDMT--------ESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~-~~p~p~i~W~k~~-~~~l~--~~~~--------~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.+.|+. .....-+.|.|.. +..+.  -.+.        +.-.+|+.+..|.     .|+|++++.+
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~e   90 (120)
T d1ai1h1          11 VIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNE   90 (120)
T ss_dssp             EECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeecc
Confidence            467899999999997642 1122357897742 12221  0110        0113678776532     4999999999


Q ss_pred             CCCcceEEEee
Q psy12724        139 DGYKSYQCRTK  149 (167)
Q Consensus       139 D~~G~Y~C~a~  149 (167)
                      |+ +.|-|...
T Consensus        91 Dt-AvYYCAr~  100 (120)
T d1ai1h1          91 DT-AMYYCSRE  100 (120)
T ss_dssp             GC-EEEEEEEE
T ss_pred             ce-eEEEEEec
Confidence            99 99999644

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.24  E-value=0.00059  Score=45.88  Aligned_cols=73  Identities=18%  Similarity=0.333  Sum_probs=47.4

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EE-----eeeecCCceEEEccCC-----eEEEeecCc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FV-----DMTESTDGKYLVLPSG-----ELHIRDVGP  137 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~-----~~~~~~~~r~~~~~~g-----~L~I~~v~~  137 (167)
                      ..+.+|+++.|.|.++++. --.--+.|.|.- +..+      .+     .+++.-.+|+.+..|.     .|.|++++.
T Consensus        11 ~~vkpg~sl~LsC~~SG~~-~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~   89 (122)
T d1vgeh1          11 EVKKPGASVKVSCKASGYS-FTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRP   89 (122)
T ss_dssp             EEECTTCCEEEEEEECSSC-GGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             cEECCCCCEEEEEEEcCCC-ccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCC
Confidence            3567899999999998651 112357898732 1111      10     0011124688776532     499999999


Q ss_pred             CCCCcceEEEee
Q psy12724        138 EDGYKSYQCRTK  149 (167)
Q Consensus       138 ~D~~G~Y~C~a~  149 (167)
                      +|+ +.|.|...
T Consensus        90 eDt-A~YYCAr~  100 (122)
T d1vgeh1          90 EDT-AVYYCARD  100 (122)
T ss_dssp             GGC-EEEEEEEE
T ss_pred             Ccc-eEEEEeec
Confidence            999 99999654

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.23  E-value=0.00053  Score=46.05  Aligned_cols=72  Identities=24%  Similarity=0.477  Sum_probs=47.2

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEee---------eecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVDM---------TESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~~---------~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.++++.- -..-+.|.|.- +..+  .-.+         ++.-.+|+.+..|.     .|.|++++.+
T Consensus        11 lvkPg~sl~LsC~~SG~s~-s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~e   89 (121)
T d2p49b1          11 LVQAGGSLRLSCAASGYAY-TYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPE   89 (121)
T ss_dssp             EEETTCCEEEEEEEESCSS-CCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCCCc-ccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecccc
Confidence            5678999999999976421 23456887732 1111  1001         11124688887542     4999999999


Q ss_pred             CCCcceEEEee
Q psy12724        139 DGYKSYQCRTK  149 (167)
Q Consensus       139 D~~G~Y~C~a~  149 (167)
                      |+ +.|.|...
T Consensus        90 Dt-AvYYCAr~   99 (121)
T d2p49b1          90 DT-ATYYCAAG   99 (121)
T ss_dssp             GC-EEEEEEES
T ss_pred             ce-eEEeeecc
Confidence            99 99999764

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.22  E-value=0.00033  Score=45.33  Aligned_cols=67  Identities=18%  Similarity=0.395  Sum_probs=40.2

Q ss_pred             EeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         78 LKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        78 ~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..|..++|.|.+.++.. +.-.++|++|| ..+....     .++.++.|.+.  ..|.   +..+|. ..|+|.+.+..
T Consensus        17 ~~~~~~tL~C~~~gFyP-~~i~v~W~~ng-~~~~~~~~~~~~~~~~dgtf~~~--s~l~---v~~~~~-~~ytC~V~H~s   88 (99)
T d1uvqa1          17 TLGQPNTLICLVDNIFP-PVVNITWLSNG-QSVTEGVSETSFLSKSDHSFFKI--SYLT---FLPSAD-EIYDCKVEHWG   88 (99)
T ss_dssp             CTTSCEEEEEEEEEECS-SCCEEEEEETT-EEECTTEEECCCEECTTSCEEEE--EEEE---ECCCTT-CCEEEEEECTT
T ss_pred             cCCCcEEEEEEEEEEEC-CCCEEEEEECC-EeccCCcEecceEECCCCCEEEE--EEEE---EcCCCC-CEEEEEEEeCC
Confidence            35788899999988732 23468999997 4542110     01122223221  1244   445676 79999999874

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00084  Score=42.72  Aligned_cols=66  Identities=23%  Similarity=0.386  Sum_probs=40.7

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .|+.+.|.|.+.++.. +.-.++|++|+ ..+....    ....++.|.+     ...-.+..+|. ..|+|.+.+..
T Consensus        14 ~~~~~tL~C~~~gFyP-~~i~v~W~~ng-~~~~~~~~~~~~~~~~~t~~~-----~s~l~~~~~~~-~~ytC~V~H~s   83 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYP-GKIDVHWTRAG-EVQEPELRGDVLHNGNGTYQS-----WVVVAVPPQDT-APYSCHVQHSS   83 (94)
T ss_dssp             TTSCEEEEEEEEEEBS-SCEEEEEEETT-EECCCSEEEEEEETTTTEEEE-----EEEEEECTTCC-SCEEEEEEETT
T ss_pred             CCCCEEEEEEEEeEEC-CCCEEEEEECC-EECCCcEEeeeecCCCCeEEE-----EEEeEeCCCCC-CEEEEEEEECC
Confidence            5789999999988632 23478999997 4432100    0112223322     22334456777 89999999875

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.20  E-value=0.00036  Score=46.63  Aligned_cols=72  Identities=21%  Similarity=0.398  Sum_probs=46.8

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EEe-----eeecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FVD-----MTESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~~-----~~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.++|+. -..--+.|.|.- +..+      .+.     +++.-.+|+.+..|.     .|.|++++.+
T Consensus        11 ~~kpg~sl~lsC~~SG~~-~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~e   89 (117)
T d1jnhb1          11 LARPGASVKLSCRTSGYS-FTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSE   89 (117)
T ss_dssp             ECCTTCCEEEEEEEESSC-SSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCCC-CCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCC
Confidence            456799999999998651 123467898731 1111      110     111224688887532     4999999999


Q ss_pred             CCCcceEEEee
Q psy12724        139 DGYKSYQCRTK  149 (167)
Q Consensus       139 D~~G~Y~C~a~  149 (167)
                      |. +.|.|...
T Consensus        90 DT-AvYYCAr~   99 (117)
T d1jnhb1          90 DS-AVYSCSRG   99 (117)
T ss_dssp             GC-EEEEEEEE
T ss_pred             cc-eEEEEeec
Confidence            99 99999553

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.19  E-value=0.0011  Score=44.14  Aligned_cols=72  Identities=17%  Similarity=0.313  Sum_probs=45.5

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------E-----EeeeecCCceEEEccC-----CeEEEeecCc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------F-----VDMTESTDGKYLVLPS-----GELHIRDVGP  137 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~-----~~~~~~~~~r~~~~~~-----g~L~I~~v~~  137 (167)
                      ..+.+|+++.|.|.+.|+.- -..-+.|.|.- +..+      .     ..+++.-.+|+.+..|     ..|.|++++.
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~-s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~   88 (117)
T d1mfah1          10 VVARPGASVKMSCKASGYTF-TNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTS   88 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCG-GGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcccCC-CCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCC
Confidence            35668999999999986411 23457887631 1111      1     0011112357776543     2599999999


Q ss_pred             CCCCcceEEEe
Q psy12724        138 EDGYKSYQCRT  148 (167)
Q Consensus       138 ~D~~G~Y~C~a  148 (167)
                      +|+ +.|.|..
T Consensus        89 eDt-AvYYCAr   98 (117)
T d1mfah1          89 EDS-AVYYCTR   98 (117)
T ss_dssp             GGC-EEEEEEE
T ss_pred             Ccc-eEEEEec
Confidence            999 9999954

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.19  E-value=0.001  Score=44.39  Aligned_cols=73  Identities=22%  Similarity=0.390  Sum_probs=47.2

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEe--------eeecCCceEEEccCC-----eEEEeecCcCC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVD--------MTESTDGKYLVLPSG-----ELHIRDVGPED  139 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~--------~~~~~~~r~~~~~~g-----~L~I~~v~~~D  139 (167)
                      .+.+|+++.|.|.++|+. --.--+.|.|.- +..+  .-.        +++.-.+|+.+..|.     .|.|++++.+|
T Consensus        11 ~vkPG~Sl~LsC~~SG~~-~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eD   89 (118)
T d1lo4h1          11 LVKPGGSLTLSCEASGFT-LRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSED   89 (118)
T ss_dssp             EECTTCCEEEEEEEESSC-TTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCCc-ccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCc
Confidence            456899999999998651 123467888742 1121  100        111224577776532     59999999999


Q ss_pred             CCcceEEEeee
Q psy12724        140 GYKSYQCRTKH  150 (167)
Q Consensus       140 ~~G~Y~C~a~n  150 (167)
                      . +.|.|....
T Consensus        90 t-A~YyCAr~~   99 (118)
T d1lo4h1          90 T-AIYYCARGT   99 (118)
T ss_dssp             C-EEEEEEEEE
T ss_pred             c-eEEEecccC
Confidence            9 999996543

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=0.00032  Score=44.93  Aligned_cols=57  Identities=28%  Similarity=0.442  Sum_probs=39.0

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCc-CCCCcceEEEeeec
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGP-EDGYKSYQCRTKHR  151 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~-~D~~G~Y~C~a~n~  151 (167)
                      .-+.|.+|+|.|...+     ...|+|.+++ ..+. .    ..++       .|...+... +|+ |.|.|...+.
T Consensus        10 VSISGTtV~LTCP~~~-----~~~I~Wkkn~-~~i~-g----~~~~-------~L~L~~FSE~e~S-GyY~C~~~~~   67 (100)
T d1jbja2          10 VSISGTSVELTCPLDS-----DENLKWEKNG-QELP-Q----KHDK-------HLVLQDFSEVEDS-GYYVCYTPAS   67 (100)
T ss_dssp             EEEETTEEEEECSSCC-----CTTCEEEETT-EEEC-S----CCCS-------EEEEESCCTTTSC-EEEEEECSSC
T ss_pred             EEEeCCEEEEECCCCC-----CCceEEeecc-ccCC-C----CCCc-------EEEEccccccccC-cceEEecCCC
Confidence            3467999999999753     2358999997 4542 1    1222       466667655 798 9999976544

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.17  E-value=0.00035  Score=47.20  Aligned_cols=74  Identities=23%  Similarity=0.469  Sum_probs=48.4

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEee---------eecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVDM---------TESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~~---------~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.++++ .-..-.+.|.|.- ++.+  .-.+         .+.-.+|+++..|.     .|.|++++.+
T Consensus        10 lvkpg~sl~LsC~~SG~-~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~e   88 (124)
T d1zvya1          10 SVQAGGSLRLSCAASGS-TDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSE   88 (124)
T ss_dssp             ECCTTCCEEEEEEEESC-STTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCc-ccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCC
Confidence            45679999999999865 2223467898742 1111  1001         11124678877542     4999999999


Q ss_pred             CCCcceEEEeeec
Q psy12724        139 DGYKSYQCRTKHR  151 (167)
Q Consensus       139 D~~G~Y~C~a~n~  151 (167)
                      |+ +.|.|.....
T Consensus        89 Dt-AvYYCAr~~~  100 (124)
T d1zvya1          89 DT-AIYTCGATRK  100 (124)
T ss_dssp             GC-EEEEEEECSS
T ss_pred             cc-eEEEEeeccc
Confidence            99 9999977543

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.16  E-value=0.00034  Score=47.19  Aligned_cols=73  Identities=21%  Similarity=0.341  Sum_probs=46.0

Q ss_pred             EEEeCCcEEEEeeeCCc-cCCcceeEEEEeCC-Ceee--EEee--------eecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSF-VADYVAVESWISDQ-GEEL--FVDM--------TESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~-~~~p~p~i~W~k~~-~~~l--~~~~--------~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.+.|+ +.+...-+.|.|.. +..+  .-.+        .+.-.+|+.+..|.     .|+|++++.+
T Consensus        11 ~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~e   90 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETA   90 (123)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecccc
Confidence            45679999999998753 12233457898631 1111  1111        01123678776432     4999999999


Q ss_pred             CCCcceEEEee
Q psy12724        139 DGYKSYQCRTK  149 (167)
Q Consensus       139 D~~G~Y~C~a~  149 (167)
                      |+ +.|.|...
T Consensus        91 Ds-AvYyCAr~  100 (123)
T d1r0ah1          91 DT-AIYYCAQS  100 (123)
T ss_dssp             GC-EEEEEEEE
T ss_pred             cc-eEEeeccc
Confidence            99 99999654

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.13  E-value=0.0014  Score=43.56  Aligned_cols=73  Identities=21%  Similarity=0.383  Sum_probs=46.6

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EE-----eeeecCCceEEEccCC-----eEEEeecCc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FV-----DMTESTDGKYLVLPSG-----ELHIRDVGP  137 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~-----~~~~~~~~r~~~~~~g-----~L~I~~v~~  137 (167)
                      ..+.+|+++.|.|.+.++. -..--+.|.|.- +..+      .+     .+++.-.+|+.+..|.     .|.|++++.
T Consensus        10 ~~~kPg~sl~LsC~~SG~s-~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~   88 (116)
T d1mjuh1          10 ELVKPGASVKLSCKASGYT-FTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTS   88 (116)
T ss_dssp             EEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             cEECCCCCEEEEEEEccCc-cccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCC
Confidence            3567899999999998641 123467887731 1111      10     0111224578776432     599999999


Q ss_pred             CCCCcceEEEee
Q psy12724        138 EDGYKSYQCRTK  149 (167)
Q Consensus       138 ~D~~G~Y~C~a~  149 (167)
                      +|. +.|.|-..
T Consensus        89 eDt-AvYYCAr~   99 (116)
T d1mjuh1          89 DDS-AVYYCANK   99 (116)
T ss_dssp             GGC-EEEEEEEE
T ss_pred             CCc-eEEEEccc
Confidence            999 99999643

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.13  E-value=0.00045  Score=46.28  Aligned_cols=71  Identities=17%  Similarity=0.341  Sum_probs=45.6

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EE-----eeeecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FV-----DMTESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~-----~~~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.+.++. -..--+.|.|.- ++.+      .+     .+.+.-.+|+.+..|.     .|.|++++.+
T Consensus        11 ~~kPg~sl~LsC~~SG~~-~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (119)
T d1eapb1          11 LVKPGASVKISCKASGYI-STDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSE   89 (119)
T ss_dssp             EECTTCCEEEEEEEESSC-GGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEccCc-ccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCC
Confidence            456799999999998641 123457888631 1111      10     0011124578776432     5999999999


Q ss_pred             CCCcceEEEe
Q psy12724        139 DGYKSYQCRT  148 (167)
Q Consensus       139 D~~G~Y~C~a  148 (167)
                      |. +.|.|..
T Consensus        90 DT-AvYYCAr   98 (119)
T d1eapb1          90 DS-AVYFCKR   98 (119)
T ss_dssp             GC-EEEEEEE
T ss_pred             cc-eEEEEEE
Confidence            99 9999954

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.13  E-value=0.0014  Score=43.88  Aligned_cols=72  Identities=17%  Similarity=0.296  Sum_probs=46.7

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EE-----eeeecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FV-----DMTESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~-----~~~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.+.++.- ...-+.|.|.- ++.+      .+     .+++.-.+|+.+..+.     .|.|++++.+
T Consensus        11 ~vkpg~sl~LsC~vSG~s~-~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~e   89 (120)
T d1ad9b1          11 VKKPGSSVKVSCKASGYTF-TDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSE   89 (120)
T ss_dssp             EECTTCCEEEEEEEESSCG-GGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCCCC-cCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCCC
Confidence            5678999999999976411 23457887731 1111      10     0111224778776432     4999999999


Q ss_pred             CCCcceEEEee
Q psy12724        139 DGYKSYQCRTK  149 (167)
Q Consensus       139 D~~G~Y~C~a~  149 (167)
                      |. +.|.|...
T Consensus        90 DT-AvYYCAr~   99 (120)
T d1ad9b1          90 DT-AFYFCARE   99 (120)
T ss_dssp             GC-EEEEEEEE
T ss_pred             cc-eEEEEEEc
Confidence            99 99999654

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.13  E-value=0.00092  Score=44.92  Aligned_cols=74  Identities=24%  Similarity=0.434  Sum_probs=47.9

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEe-----------eeecCCceEEEccCC-----eEEEeecC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVD-----------MTESTDGKYLVLPSG-----ELHIRDVG  136 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~-----------~~~~~~~r~~~~~~g-----~L~I~~v~  136 (167)
                      .+.+|+++.|.|.+.++. -..--+.|.|.- +..+  .-.           +++.-.+|+.+..|.     .|+|++++
T Consensus        11 ~vkpg~sl~LsC~~SG~s-~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~   89 (122)
T d1q9rb1          11 LVQSGGSLRLSCATSGFT-FTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR   89 (122)
T ss_dssp             EECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             eECCCCCEEEEEEEcCCC-CcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeec
Confidence            567899999999997641 122357898632 1111  100           111123688877533     49999999


Q ss_pred             cCCCCcceEEEeeec
Q psy12724        137 PEDGYKSYQCRTKHR  151 (167)
Q Consensus       137 ~~D~~G~Y~C~a~n~  151 (167)
                      .+|. +.|.|.....
T Consensus        90 ~eDT-AvYYCar~~~  103 (122)
T d1q9rb1          90 AEDS-ATYYCARDHD  103 (122)
T ss_dssp             GGGC-EEEEEEECCC
T ss_pred             cCcc-eEEEEEecCC
Confidence            9999 9999987543

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.13  E-value=0.0013  Score=44.03  Aligned_cols=74  Identities=20%  Similarity=0.284  Sum_probs=46.7

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeE--Eee--------eecCCceEEEccCC-----eEEEeecCcCC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELF--VDM--------TESTDGKYLVLPSG-----ELHIRDVGPED  139 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~--~~~--------~~~~~~r~~~~~~g-----~L~I~~v~~~D  139 (167)
                      .+.+|+++.|.|.+.|+.=.-.--+.|.|.- ++.+.  -.+        .+.-.+|+.+..|.     .|.|++++.+|
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~eD   90 (119)
T d1ncwh1          11 LVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTED   90 (119)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccCC
Confidence            5678999999999986511011357897631 12220  000        11224677777532     49999999999


Q ss_pred             CCcceEEEeee
Q psy12724        140 GYKSYQCRTKH  150 (167)
Q Consensus       140 ~~G~Y~C~a~n  150 (167)
                      . +.|.|....
T Consensus        91 T-AvYYCAr~~  100 (119)
T d1ncwh1          91 T-ATYYCAGLL  100 (119)
T ss_dssp             C-EEEEEEEEE
T ss_pred             c-eEEEEeEec
Confidence            9 999996543

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.12  E-value=0.0012  Score=44.36  Aligned_cols=73  Identities=19%  Similarity=0.357  Sum_probs=47.0

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EE-----eeeecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FV-----DMTESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~-----~~~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.++++.= -.--+.|.|.- ++.+      .+     .+++.-.+|+.+..|.     .|.|++++.+
T Consensus        11 lvkPg~sl~LsC~~SG~s~-s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~e   89 (122)
T d1bz7b1          11 LVQPGGSRKLSCAASGFTF-SNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSE   89 (122)
T ss_dssp             EECTTCCEEEEEEEESSCG-GGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCCCC-cCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeeccc
Confidence            4567999999999986411 12356887731 1111      00     0111224788877542     5999999999


Q ss_pred             CCCcceEEEeee
Q psy12724        139 DGYKSYQCRTKH  150 (167)
Q Consensus       139 D~~G~Y~C~a~n  150 (167)
                      |. +.|.|...+
T Consensus        90 DT-AvYYCAr~~  100 (122)
T d1bz7b1          90 DT-AIYYCTRGG  100 (122)
T ss_dssp             GC-EEEEEEEEC
T ss_pred             Cc-eEEEeecCC
Confidence            99 999996544

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.12  E-value=0.0014  Score=43.89  Aligned_cols=73  Identities=23%  Similarity=0.393  Sum_probs=46.4

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeE--Eee-----------eecCCceEEEccCC-----eEEEeecC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELF--VDM-----------TESTDGKYLVLPSG-----ELHIRDVG  136 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~--~~~-----------~~~~~~r~~~~~~g-----~L~I~~v~  136 (167)
                      .+.+|+++.|.|.++++.- -.--+.|.|.- +..+.  -.+           ++.-.+|+.+..+.     .|+|++++
T Consensus        11 ~vkpG~sl~LsC~~SG~s~-~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~   89 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSGFTF-SDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLR   89 (120)
T ss_dssp             EECTTCCEEEEEEEESSCT-TTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             eECCCCCeEEEEEECCccC-cCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeecc
Confidence            4567999999999976521 23457897731 12211  000           11123578776432     59999999


Q ss_pred             cCCCCcceEEEeee
Q psy12724        137 PEDGYKSYQCRTKH  150 (167)
Q Consensus       137 ~~D~~G~Y~C~a~n  150 (167)
                      .+|+ +.|.|....
T Consensus        90 ~eDt-AvYYCA~~~  102 (120)
T d1dlfh_          90 AEDT-GIYYCTGIY  102 (120)
T ss_dssp             GGGC-EEEEEEEEB
T ss_pred             CCCc-eEEEeeEec
Confidence            9999 999996543

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.11  E-value=0.0015  Score=42.42  Aligned_cols=69  Identities=12%  Similarity=0.174  Sum_probs=41.1

Q ss_pred             EeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEe---ecCcCCCCcceEEEeeecCc
Q psy12724         78 LKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIR---DVGPEDGYKSYQCRTKHRLT  153 (167)
Q Consensus        78 ~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~---~v~~~D~~G~Y~C~a~n~~~  153 (167)
                      ..|+.++|-|.+.++.. +.-.|+|++|+ ..+...    .........+|...++   .+..+|. ..|+|.+.+...
T Consensus        16 e~~~~~tL~C~v~gF~P-~~i~V~W~~ng-~~~~~~----~~~~~~~~~dgty~~~S~L~v~~~~~-~~ytC~V~H~~l   87 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFP-PMLTVNWHDHS-VPVEGF----GPTFVSAVDGLSFQAFSYLNFTPEPS-DIFSCIVTHEPD   87 (103)
T ss_dssp             CTTSCEEEEEEEEEEBS-SCEEEEEEETT-EECSSC----CCEEEEEETTTEEEEEEEEEECCCTT-CCEEEEEEETTT
T ss_pred             hcCCCeEEEEEEeeEEC-CCCEEEEEECC-eecCCc----EeceEEeCCCCcEEEEEEEEEecCCC-CEEEEEEEeCCC
Confidence            46888999999988732 23478999997 443210    0111112233432221   2345676 789999999863

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.10  E-value=0.00069  Score=43.03  Aligned_cols=66  Identities=21%  Similarity=0.289  Sum_probs=39.6

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee---eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM---TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~---~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .++.+.|.|.+.++... .-.++|++|| ..+....   .++.++.|.+..  .|.|   ..+|. ..|+|.+.+..
T Consensus        14 ~~~~~~L~C~~~gF~P~-~i~v~W~~ng-~~~~~~~~~~~~~~dgty~~~S--~l~v---~~~~~-~~ytC~V~H~s   82 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPP-ELKFRFLRNG-LASGSGNCSTGPNGDGSFHAWS--LLEV---KRGDE-HHYQCQVEHEG   82 (91)
T ss_dssp             STTEEEEEEEEEEEBSS-CCEEEEEETT-EECCCCEEEEEECSSSCEEEEE--EEEE---ETTCG-GGEEEEEECTT
T ss_pred             CCCCEEEEEEEEeEECC-CCEEEEEECC-EeCCccCccceecCCCCEeEEE--EEEE---CCCCC-CEEEEEEEeCC
Confidence            35679999999887432 3377999997 4442111   012233333221  2444   45676 89999999864

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.10  E-value=0.00092  Score=45.15  Aligned_cols=72  Identities=18%  Similarity=0.372  Sum_probs=46.5

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EE-----eeeecCCceEEEccCC-----eEEEeecCc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FV-----DMTESTDGKYLVLPSG-----ELHIRDVGP  137 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~-----~~~~~~~~r~~~~~~g-----~L~I~~v~~  137 (167)
                      ..+.+|+++.|.|.+.++. --.--+.|.|.- ++.+      .+     .+++.-.+|+.+..|.     .|.|++++.
T Consensus         9 ~~~kPg~sl~LsC~~SG~~-~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~   87 (126)
T d1lmka1           9 ELMKPGRSLKISCKTTGYI-FSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTS   87 (126)
T ss_dssp             EEECTTCCEEEEEEEESSC-TTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEccCC-CCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCC
Confidence            3566899999999997641 123457887731 1111      11     1111224788776432     599999999


Q ss_pred             CCCCcceEEEe
Q psy12724        138 EDGYKSYQCRT  148 (167)
Q Consensus       138 ~D~~G~Y~C~a  148 (167)
                      +|. +.|.|..
T Consensus        88 eDT-AvYYCAr   97 (126)
T d1lmka1          88 EDS-AVYYCAR   97 (126)
T ss_dssp             GGC-EEEEEEE
T ss_pred             Ccc-eEEEEee
Confidence            999 9999964

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.10  E-value=0.00045  Score=46.86  Aligned_cols=73  Identities=27%  Similarity=0.456  Sum_probs=46.8

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Cee---e---EEe----------eeecCCceEEEccCC-----eEEEe
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEE---L---FVD----------MTESTDGKYLVLPSG-----ELHIR  133 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~---l---~~~----------~~~~~~~r~~~~~~g-----~L~I~  133 (167)
                      .+.+|+++.|.|.++|+. --.-.+.|.|.. +..   +   ...          +++.-.+|+.+..+.     .|.|+
T Consensus        11 lvkpg~sl~LsC~~SG~~-~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~   89 (127)
T d1i3ua_          11 LVQAGDSLKLSCEASGDS-IGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMN   89 (127)
T ss_dssp             ECCTTCCEEEEEEEESSC-GGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEEC
T ss_pred             eECCCCCeEEEEEEcCCC-CCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeee
Confidence            456799999999997641 123467898742 111   1   100          011123578776432     59999


Q ss_pred             ecCcCCCCcceEEEeee
Q psy12724        134 DVGPEDGYKSYQCRTKH  150 (167)
Q Consensus       134 ~v~~~D~~G~Y~C~a~n  150 (167)
                      +++.+|+ +.|.|-+..
T Consensus        90 ~l~~eDt-AvYYCAr~~  105 (127)
T d1i3ua_          90 SLKPEDT-AVYYCAAKT  105 (127)
T ss_dssp             SCCGGGC-EEEEEEEES
T ss_pred             cccccce-eEEEEEEEe
Confidence            9999999 999998654

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.09  E-value=0.00055  Score=45.76  Aligned_cols=70  Identities=17%  Similarity=0.339  Sum_probs=45.0

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--E----E-----eeeecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--F----V-----DMTESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~----~-----~~~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.+.|+.- -.-.+.|.|.- +..+  .    +     .+++.-.+|+.+..|.     .|.|++++.+
T Consensus        11 ~~kpg~sl~lsC~~SG~~~-~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~e   89 (118)
T d2jelh1          11 LVRPGVSVKISCKGSGYTF-TTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSE   89 (118)
T ss_dssp             EECTTCCEEEEEEEESSCG-GGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCCCC-CCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccccC
Confidence            4567999999999976411 12367898732 1111  0    0     0111123677776532     4999999999


Q ss_pred             CCCcceEEE
Q psy12724        139 DGYKSYQCR  147 (167)
Q Consensus       139 D~~G~Y~C~  147 (167)
                      |+ +.|.|-
T Consensus        90 DT-AvYYCA   97 (118)
T d2jelh1          90 DS-AIYYCA   97 (118)
T ss_dssp             GC-EEEEEE
T ss_pred             cc-eeeeEE
Confidence            99 999994

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.06  E-value=0.00083  Score=45.38  Aligned_cols=73  Identities=22%  Similarity=0.389  Sum_probs=47.3

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeE--Eee---------eecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELF--VDM---------TESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~--~~~---------~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.++++. --..-+.|.|.. +..+.  -.+         ++.-.+|+.+..|.     .|.|++++.+
T Consensus        11 ~vkPg~sl~LsC~~SG~~-~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~e   89 (126)
T d1dfbh1          11 LVQPGRSLRLSCAASGFT-FNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAE   89 (126)
T ss_dssp             EECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEECCcc-ccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccC
Confidence            466899999999997641 123357887732 11111  001         11224678777542     5999999999


Q ss_pred             CCCcceEEEeee
Q psy12724        139 DGYKSYQCRTKH  150 (167)
Q Consensus       139 D~~G~Y~C~a~n  150 (167)
                      |. +.|.|....
T Consensus        90 Dt-avYYCAr~~  100 (126)
T d1dfbh1          90 DM-ALYYCVKGR  100 (126)
T ss_dssp             GC-EEEEEEEEE
T ss_pred             cc-eEEEEEecc
Confidence            99 999997543

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.06  E-value=0.00057  Score=46.31  Aligned_cols=73  Identities=23%  Similarity=0.434  Sum_probs=46.9

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeE--Eee---------eecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELF--VDM---------TESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~--~~~---------~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.++|+.- -...+.|.|.- ++.+.  -.+         ++.-.+|+.+..|.     .|+|++++.+
T Consensus        11 ~~kpg~sl~LsC~~SG~~~-~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~e   89 (127)
T d2fb4h1          11 VVQPGRSLRLSCSSSGFIF-SSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPE   89 (127)
T ss_dssp             EECTTCCEEEEEEEESSCG-GGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEECCCCc-cCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeec
Confidence            4567999999999986411 23356887632 11111  000         11124678777542     5999999999


Q ss_pred             CCCcceEEEeee
Q psy12724        139 DGYKSYQCRTKH  150 (167)
Q Consensus       139 D~~G~Y~C~a~n  150 (167)
                      |. +.|.|....
T Consensus        90 DT-A~YYCAr~~  100 (127)
T d2fb4h1          90 DT-GVYFCARDG  100 (127)
T ss_dssp             GC-EEEEEEEEC
T ss_pred             ce-eEEEEEEec
Confidence            99 999997543

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.05  E-value=0.00092  Score=45.40  Aligned_cols=73  Identities=14%  Similarity=0.288  Sum_probs=47.4

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EE-----eeeecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FV-----DMTESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~-----~~~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.+.++.- ..-.+.|.|.- +..+      .+     .+.+.-.+|+.+..|.     .|.|++++.+
T Consensus        10 ~~kPg~sl~LsC~~SG~~~-~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~e   88 (130)
T d1rhhb1          10 VKKPGSSVQVSCKASGGTF-SMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSD   88 (130)
T ss_dssp             EECTTCCEEEEEEETTSCC-TTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEeCCCc-cCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCC
Confidence            5668999999999986521 23457898732 1112      10     0111124678777532     4999999999


Q ss_pred             CCCcceEEEeee
Q psy12724        139 DGYKSYQCRTKH  150 (167)
Q Consensus       139 D~~G~Y~C~a~n  150 (167)
                      |+ +.|.|....
T Consensus        89 Dt-AvYyCAr~~   99 (130)
T d1rhhb1          89 DT-AVYYCARDF   99 (130)
T ss_dssp             GC-EEEEEEEEC
T ss_pred             Cc-EEEEEEeec
Confidence            99 999997653

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.0016  Score=40.58  Aligned_cols=32  Identities=13%  Similarity=0.213  Sum_probs=24.9

Q ss_pred             eEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCc
Q psy12724         18 YDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGG   53 (167)
Q Consensus        18 ~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~   53 (167)
                      +++.+..|+++.|.|.... |   .+.|.|.+++..
T Consensus         3 ~~v~~~~G~sVtl~c~~~~-p---~~~v~W~~~~~~   34 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPSNV-P---LKEVLWKKQKDK   34 (93)
T ss_dssp             EEEEEETTCCEEECCCCSS-C---CSCEEEEETTEE
T ss_pred             cEEEEEECCCEEEEecCCC-C---CcEEEEEEeccc
Confidence            5678999999999998643 3   346999998643

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.02  E-value=0.00096  Score=45.09  Aligned_cols=73  Identities=22%  Similarity=0.401  Sum_probs=46.5

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EEe-----eeecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FVD-----MTESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~~-----~~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.++++. -..-.+.|.|.- ++.+      ...     +.+.-.+|+.+..|.     .|.|++++.+
T Consensus        10 lvkPg~sl~LsC~~SG~~-~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~e   88 (126)
T d1rjca1          10 SVQAGQSLRLSCATSGAT-SSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPE   88 (126)
T ss_dssp             EECTTCCEEEEEECC-CT-TTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEECCCC-CcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCcc
Confidence            567899999999998641 123467898732 1111      110     011123678776432     4999999999


Q ss_pred             CCCcceEEEeee
Q psy12724        139 DGYKSYQCRTKH  150 (167)
Q Consensus       139 D~~G~Y~C~a~n  150 (167)
                      |+ +.|.|....
T Consensus        89 DT-AvYYCAr~~   99 (126)
T d1rjca1          89 DT-AMYYCAADT   99 (126)
T ss_dssp             GC-EEEEEEECC
T ss_pred             cC-ceeEEEeec
Confidence            99 999997653

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.99  E-value=0.00067  Score=42.86  Aligned_cols=67  Identities=21%  Similarity=0.375  Sum_probs=39.4

Q ss_pred             EeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         78 LKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        78 ~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..++.+.|.|.+.++.. ..-.|+|++|| ..+....     .++.++.|...  ..|.|.   .+|. ..|+|.+.+..
T Consensus        13 ~~~~~~~L~C~a~gFyP-~~i~v~W~~~g-~~~~~~~~~~~~~~~~~gt~~~~--s~l~v~---~~~~-~~ytC~V~H~~   84 (89)
T d2mhaa1          13 RPEDKVTLRCWALGFYP-ADITLTWQLNG-EELIQDMELVETRPAGDGTFQKW--ASVVVP---LGKE-QYYTCHVYHQG   84 (89)
T ss_dssp             SCSSEEEEEEEEESCBS-SCCEEEEEETT-EEECTTCEECCCEECSSSCEEEE--EEEEEE---SSTT-TTCEEEEECSS
T ss_pred             CCCCCEEEEEEEEeEEC-CCCEEEEEECC-EEeCCCEEECcEecCCCCcEEEE--EEEEec---CcCC-CEEEEEEEECC
Confidence            34678999999988732 22367999997 4442110     01122333222  234443   4565 78999998764

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.97  E-value=0.0008  Score=45.44  Aligned_cols=73  Identities=14%  Similarity=0.269  Sum_probs=46.1

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EE-----eeeecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FV-----DMTESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~-----~~~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.+.|+.- -.--+.|.|.- ++.+      .+     .+++.-.+|+.+..|.     .|.|++++.+
T Consensus        11 l~kPg~sl~LsC~~SG~~~-~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~e   89 (125)
T d1rihh1          11 LAKPGASMKMSCRASGYSF-TSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSE   89 (125)
T ss_dssp             EECTTCCEEEEEEEESSCG-GGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEccCCC-CCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCcc
Confidence            5668999999999976411 12357887631 1111      10     0011123677776432     4999999999


Q ss_pred             CCCcceEEEeee
Q psy12724        139 DGYKSYQCRTKH  150 (167)
Q Consensus       139 D~~G~Y~C~a~n  150 (167)
                      |+ +.|.|-...
T Consensus        90 Dt-AvYYCAR~~  100 (125)
T d1rihh1          90 DS-AVYYCARES  100 (125)
T ss_dssp             GC-EEEEEEEEC
T ss_pred             cc-eEEEEeeeC
Confidence            99 999997543

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.97  E-value=0.00079  Score=45.73  Aligned_cols=72  Identities=14%  Similarity=0.292  Sum_probs=46.4

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEee---------eecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVDM---------TESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~~---------~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.++++. --...+.|.|.- ++.+  .-.+         ++.-.+|+.+..|.     .|.|++++.+
T Consensus        11 ~~kPg~sl~LsC~~SG~~-~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~e   89 (130)
T d1rzga1          11 VKKPGSSVKVSCKASGGT-FSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRSE   89 (130)
T ss_dssp             EECTTCCEEEEEECCSSC-GGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCCC-CCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCCC
Confidence            566799999999998651 123467898732 1111  1011         11124678776432     4999999999


Q ss_pred             CCCcceEEEee
Q psy12724        139 DGYKSYQCRTK  149 (167)
Q Consensus       139 D~~G~Y~C~a~  149 (167)
                      |. +.|.|-..
T Consensus        90 Dt-A~YYCAr~   99 (130)
T d1rzga1          90 DT-AVFYCASP   99 (130)
T ss_dssp             GC-EEEEEEEC
T ss_pred             cc-EEEEEEEe
Confidence            99 99999754

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00051  Score=44.72  Aligned_cols=69  Identities=17%  Similarity=0.381  Sum_probs=42.8

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee------eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM------TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~------~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .++.++|-|.+.++.. ..-.++|++|| ..+....      .++.++.|.+.  ..|.|..-...+. ..|+|.+.+..
T Consensus        18 ~~~~vtL~Clv~~f~P-~~i~v~W~~~g-~~~~~~~~~~~~~~~~~~gtys~~--S~L~v~~~~W~~g-~~ytC~V~H~~   92 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMP-EDISVQWLHNE-VQLPDARHSTTQPRKTKGSGFFVF--SRLEVTRAEWEQK-DEFICRAVHEA   92 (105)
T ss_dssp             SSCCEEEEEEEEEEBS-SCCEEEEEETT-EECCGGGEEECCCEECSSSCEEEE--EEEEECHHHHTTG-GGEEEEEECTT
T ss_pred             cCCcEEEEEEEEeeeC-CCcEEEEEECC-EECCCceeEeeeeEecCCCCEEEE--EEEEECHHHcCCC-CEEEEEEEECC
Confidence            4678999999977522 23578999997 4432100      01233444432  3577766655555 68999999864

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.96  E-value=0.0009  Score=45.26  Aligned_cols=73  Identities=19%  Similarity=0.343  Sum_probs=47.1

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EE-----eeeecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FV-----DMTESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~-----~~~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.+.++. =..-.+.|.|.- +..+      .+     .+++.-.+|+.+..|.     .|.|++++.+
T Consensus        11 ~~kPg~sl~LsC~~SG~s-~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~e   89 (127)
T d2fx7h1          11 VKRPGSSVTVSCKASGGS-FSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPE   89 (127)
T ss_dssp             EECTTCCEEEEEEEESSC-STTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCCC-CCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCcc
Confidence            456799999999997641 122357887632 1111      11     0111224688777542     4999999999


Q ss_pred             CCCcceEEEeee
Q psy12724        139 DGYKSYQCRTKH  150 (167)
Q Consensus       139 D~~G~Y~C~a~n  150 (167)
                      |. +.|.|....
T Consensus        90 DT-avYYCAR~~  100 (127)
T d2fx7h1          90 DT-AVYYCAREG  100 (127)
T ss_dssp             GC-EEEEEEEEE
T ss_pred             cc-eEEEEeecc
Confidence            99 999997654

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=96.95  E-value=0.00055  Score=43.96  Aligned_cols=65  Identities=17%  Similarity=0.325  Sum_probs=39.7

Q ss_pred             eCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEee----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDM----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .++.++|.|.+.++.  |.. .++|++|+ ..+....    .++.++.|.+.  ..|.|.   .+|. ..|+|.+.+..
T Consensus        15 ~~~~vtL~C~a~gF~--P~~i~v~W~~~~-~~~~~~~~~~~~~~~dgty~~~--S~L~v~---~~~~-~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFY--PKPVWVMWMRGE-QEQQGTQLGDILPNANWTWYLR--ATLDVA---DGEA-AGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEB--SSCEEEEEEETT-EECTTCEECCCEECTTSCEEEE--EEEEEE---GGGC-TTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEE--CCCcEEEEEECc-ccCCCceeCccEeCCCCcEEEE--EEEEEe---CccC-CEEEEEEEeCC
Confidence            356799999998863  444 78999987 3331100    11223333332  135554   4676 89999999864

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.95  E-value=0.0013  Score=44.47  Aligned_cols=74  Identities=16%  Similarity=0.308  Sum_probs=48.4

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EE-----eeeecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FV-----DMTESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~-----~~~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.+.++.- -.--+.|.|.- ++.+      .+     .+++.-.+|+.+..|.     .|.|++++.+
T Consensus        11 ~~kpg~sl~LsC~~SG~s~-~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~e   89 (128)
T d2nxyd1          11 VKKPGSSVKVSCKASGDTF-IRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSD   89 (128)
T ss_dssp             EECTTCCEEEEEEEESSCG-GGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCCCc-cCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecccc
Confidence            5678999999999986521 23457887631 1111      10     1111234788887532     4999999999


Q ss_pred             CCCcceEEEeeec
Q psy12724        139 DGYKSYQCRTKHR  151 (167)
Q Consensus       139 D~~G~Y~C~a~n~  151 (167)
                      |. +.|.|.....
T Consensus        90 DT-A~YYCAr~~~  101 (128)
T d2nxyd1          90 DT-AVYFCAGVYE  101 (128)
T ss_dssp             GC-EEEEEEEEEC
T ss_pred             Cc-eEEEEeEEec
Confidence            99 9999987643

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=96.92  E-value=0.0013  Score=43.97  Aligned_cols=73  Identities=19%  Similarity=0.347  Sum_probs=45.7

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EE-----eeeecCCceEEEccCC-----eEEEeecCc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FV-----DMTESTDGKYLVLPSG-----ELHIRDVGP  137 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~-----~~~~~~~~r~~~~~~g-----~L~I~~v~~  137 (167)
                      ..+.+|+++.|.|.+.|+.= -.--+.|.|.- +..+      .+     .+.+.-.+|+.+..|.     .|.|++++.
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~-~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~   88 (118)
T d1ct8b1          10 VLVKPGASVKLSCKTSGFTF-SSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTT   88 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCS-TTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEccccC-CCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCC
Confidence            35667999999999976421 12356887632 1111      11     0111123567666432     599999999


Q ss_pred             CCCCcceEEEee
Q psy12724        138 EDGYKSYQCRTK  149 (167)
Q Consensus       138 ~D~~G~Y~C~a~  149 (167)
                      +|. +.|.|-..
T Consensus        89 eDt-AvYYCAr~   99 (118)
T d1ct8b1          89 EDS-AIYYCARY   99 (118)
T ss_dssp             GGC-EEEEEEEE
T ss_pred             Ccc-eEEEEeee
Confidence            999 99999553

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.0018  Score=41.53  Aligned_cols=73  Identities=15%  Similarity=0.208  Sum_probs=48.3

Q ss_pred             EeCCcEEEEeeeCCccCCcceeEEEEeCCC-eeeEEee----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         78 LKGNSAVLKCHIPSFVADYVAVESWISDQG-EELFVDM----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        78 ~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~-~~l~~~~----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..|+.+.|.-..... .+-...|+|.|.++ ..+...-    .-...+.|.++.||+|.|.++...|+ |.|.-.+-|+-
T Consensus         9 aL~~di~ldIP~fq~-~~~iddIrW~k~~~k~kiAefKk~~~~f~~~~~y~i~~nGtLkIK~L~~~d~-GtYkv~vYd~~   86 (101)
T d1hnfa1           9 ALGQDINLDIPSFQM-SDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQ-DIYKVSIYDTK   86 (101)
T ss_dssp             ETTSCEEECCTTCCC-CSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGC-EEEEEEEEETT
T ss_pred             cccCCccccCCCccc-cCCcceeEEEecCCCcceeeecccCCCCCCCceEEEccCCcEEeeeeeecCC-CcEEEEEEcCC
Confidence            456777665322111 33567889999432 1221100    00235679999999999999999999 99999998875

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.90  E-value=0.0016  Score=44.28  Aligned_cols=73  Identities=21%  Similarity=0.400  Sum_probs=47.1

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-CeeeE--Eee---------eecCCceEEEccCC-----eEEEeecCc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEELF--VDM---------TESTDGKYLVLPSG-----ELHIRDVGP  137 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l~--~~~---------~~~~~~r~~~~~~g-----~L~I~~v~~  137 (167)
                      ..+.+|+++.|.|.++++.= -.--+.|.|.- ++.+.  -.+         ++.-.+|+.+..|.     .|.|++++.
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~-s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~   87 (133)
T d1rzfh1           9 EVNKPGSSVKVSCQASGATL-NSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRS   87 (133)
T ss_dssp             EEECTTCCEEEEEEESSSCS-TTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcCCCc-cCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCC
Confidence            35678999999999986411 12357887731 11111  001         11124788877542     499999999


Q ss_pred             CCCCcceEEEee
Q psy12724        138 EDGYKSYQCRTK  149 (167)
Q Consensus       138 ~D~~G~Y~C~a~  149 (167)
                      +|. +.|.|...
T Consensus        88 eDt-A~YYCAr~   98 (133)
T d1rzfh1          88 DDT-AVYYCASN   98 (133)
T ss_dssp             GGC-EEEEEEEE
T ss_pred             CCC-EEEEeeec
Confidence            999 99999654

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.89  E-value=0.00098  Score=44.90  Aligned_cols=72  Identities=19%  Similarity=0.373  Sum_probs=46.0

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EE-----eeeecCCceEEEccCC-----eEEEeecCc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FV-----DMTESTDGKYLVLPSG-----ELHIRDVGP  137 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~-----~~~~~~~~r~~~~~~g-----~L~I~~v~~  137 (167)
                      ..+.+|+++.|.|.+.|+.= -.-.+.|.|.- +..+      .+     .+++.-.+|+.+..|.     .|.|++++.
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~-~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~   88 (124)
T d2b1hh1          10 EVKKSGESLKISCQTSGYSF-SDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKP   88 (124)
T ss_dssp             EEEETTCCEEEEEEEESSCG-GGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCG
T ss_pred             ceECCCCCEEEEEEEcCCCC-cCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecccc
Confidence            35678999999999986411 12356888731 1111      11     0011124677776533     499999999


Q ss_pred             CCCCcceEEEe
Q psy12724        138 EDGYKSYQCRT  148 (167)
Q Consensus       138 ~D~~G~Y~C~a  148 (167)
                      +|. +.|.|..
T Consensus        89 eDT-A~YYCAR   98 (124)
T d2b1hh1          89 SDT-ALYYCAR   98 (124)
T ss_dssp             GGC-EEEEEEE
T ss_pred             ccc-eEEEEee
Confidence            999 9999943

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00091  Score=43.16  Aligned_cols=68  Identities=24%  Similarity=0.389  Sum_probs=42.6

Q ss_pred             eCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .++.+.|-|.+.++.  |. -.|+|++|| ..+....     ..+.++.|.+.  ..|.|..-..... ..|+|.+.+..
T Consensus        19 ~~~~~tl~C~v~~f~--P~~i~v~W~~~g-~~~~~~~~t~~~~~~~dgtys~~--S~L~v~~~~w~~~-~~ytC~V~H~~   92 (102)
T d1q0xl2          19 STAKATLVCTITDFY--PGVVTVDWKVDG-TPVTAGMETTQPSKQSNNKYMAS--SYLTLTARAWERH-SSYSCQVTHEG   92 (102)
T ss_dssp             TTTEEEEEEEEEEEB--SSCCEEEEEETT-EEECTTEEECCCEECTTSCEEEE--EEEEEEHHHHTTC-CEEEEEEEETT
T ss_pred             CCCeEEEEEEEeeee--CCCCEEEEEECC-EECCCCeEecccEEcCCCCEEEE--EEEEECHHHhCCC-CEEEEEEEECC
Confidence            456789999998763  33 368999987 4432110     01123444332  2477766665555 79999999874

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.85  E-value=0.001  Score=45.02  Aligned_cols=72  Identities=15%  Similarity=0.313  Sum_probs=46.4

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EE-----eeeecCCceEEEccCC-----eEEEeecCc
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FV-----DMTESTDGKYLVLPSG-----ELHIRDVGP  137 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~-----~~~~~~~~r~~~~~~g-----~L~I~~v~~  137 (167)
                      ..+.+|+++.|.|.+.++. --.--+.|.|.- ++.+      .+     .+++.-.+|+.+..|.     .|.|++++.
T Consensus        10 ~~~kpg~sl~lsC~~SG~~-~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~   88 (127)
T d1n0xh1          10 EVKKPGASVKVSCQASGYR-FSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRS   88 (127)
T ss_dssp             EEECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcCCC-CCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCC
Confidence            3567899999999998641 122356887732 1111      11     0111224678777542     499999999


Q ss_pred             CCCCcceEEEe
Q psy12724        138 EDGYKSYQCRT  148 (167)
Q Consensus       138 ~D~~G~Y~C~a  148 (167)
                      +|. +.|.|.-
T Consensus        89 eDt-AvYYCAR   98 (127)
T d1n0xh1          89 ADT-AVYYCAR   98 (127)
T ss_dssp             GGC-EEEEEEE
T ss_pred             CCc-eEEEEEe
Confidence            999 9999963

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.84  E-value=0.00095  Score=42.82  Aligned_cols=67  Identities=18%  Similarity=0.423  Sum_probs=37.3

Q ss_pred             EeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         78 LKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        78 ~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..|+.++|-|.+.++.. +.-.++|++|| ..+....     .++.++.|.+.     ..-.+..++. ..|+|.+.+..
T Consensus        14 ~~~~~~tL~C~~~gF~P-~~i~v~W~~ng-~~~~~~~~~~~~~~~~dgty~~~-----s~l~v~~~~~-~~ytC~V~H~s   85 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYP-GQIKVRWFRND-QEETAGVVSTPLIRNGDWTFQIL-----VMLEMTPQRG-DVYTCHVEHPS   85 (97)
T ss_dssp             -----CEEEEEEEEEBS-SCCEEEEEETT-EEECTTEEECCCEECSSSCEEEE-----EEEECCSCTT-CCEEEEEECTT
T ss_pred             cCCCCEEEEEEEeeeEC-CCeEEEEEECC-EEcCCCcEeceeecCCCceEEEE-----EEeccCCCCC-CEEEEEEEeCC
Confidence            45777899999988732 23478999997 4432110     01122233221     2224456777 89999999875

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.83  E-value=0.0015  Score=44.36  Aligned_cols=73  Identities=23%  Similarity=0.399  Sum_probs=47.5

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEe-----------eeecCCceEEEccCC-----eEEEeecC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVD-----------MTESTDGKYLVLPSG-----ELHIRDVG  136 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~-----------~~~~~~~r~~~~~~g-----~L~I~~v~  136 (167)
                      .+..|+++.|.|.+.++. --...+.|.|.- ++.+  .-.           +++.-.+|+.+..|.     .|.|++++
T Consensus        11 ~vkpg~sl~LsC~~SG~s-~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~   89 (131)
T d3c2ah1          11 LVKPGGSLRLTCVASGFT-FSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLK   89 (131)
T ss_dssp             EECTTCCEEEEEEEESSC-GGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             eECCCCCeEEEEEECCCC-CcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceeccc
Confidence            466899999999997641 123467887632 1111  100           011224678776542     49999999


Q ss_pred             cCCCCcceEEEeee
Q psy12724        137 PEDGYKSYQCRTKH  150 (167)
Q Consensus       137 ~~D~~G~Y~C~a~n  150 (167)
                      .+|. +.|.|....
T Consensus        90 ~eDT-AvYYCAR~~  102 (131)
T d3c2ah1          90 TEDT-AVYSCTTDG  102 (131)
T ss_dssp             GGGC-EEEEEEEEE
T ss_pred             cCCc-eEEEEeccc
Confidence            9999 999997653

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.77  E-value=0.0071  Score=38.00  Aligned_cols=71  Identities=17%  Similarity=0.258  Sum_probs=46.8

Q ss_pred             eEEEeCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEc-cCC-----eEEEeecCcCCCCcceEEEe
Q psy12724         75 EHVLKGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVL-PSG-----ELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        75 ~~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~-~~g-----~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      .++..|+.-.|+|.+.-  -...|.++|-|-++..-.+.-  ...++++.- .++     .|++..+-++|- |.|+|.|
T Consensus        13 hs~~~G~~f~leCPVkY--C~~RPnVtWCKlngt~cv~Le--~~pq~~TsW~e~~nis~FvLhF~pvl~sDn-GsYrCSa   87 (104)
T d1xaua_          13 HSAWTGELFKIECPVKY--CVHRPNVTWCKHNGTIWVPLE--VGPQLYTSWEENRSVPVFVLHFKPIHLSDN-GSYSCST   87 (104)
T ss_dssp             EEECTTSCEEEEEEEEC--SSSCCCEEEEEECSSSEEECC--CBTTEEEEEECSSSSCEEEEEETTCCGGGC-EEEEEEE
T ss_pred             eeEecCCceEecCcchh--hcCCCCcEEEEeCCcEEEEee--cCCccccchhhcCCeeEEEEEeeeeeecCC-CceEEec
Confidence            35678999999999852  235678899886544433210  112333222 122     489999999997 9999999


Q ss_pred             ee
Q psy12724        149 KH  150 (167)
Q Consensus       149 ~n  150 (167)
                      .-
T Consensus        88 nf   89 (104)
T d1xaua_          88 NF   89 (104)
T ss_dssp             EE
T ss_pred             CC
Confidence            64

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00052  Score=44.75  Aligned_cols=68  Identities=16%  Similarity=0.323  Sum_probs=42.0

Q ss_pred             eCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEee---------eecCCceEEEccCCeEEEeecCcCCCCcceEEEe
Q psy12724         79 KGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDM---------TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRT  148 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~---------~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a  148 (167)
                      .|+.+.|.|.+.++  .|.. .|+|++|| ..+....         ....++.|.+.  ..|.|..-..... ..|+|.+
T Consensus        19 ~~~~~tl~C~~~~f--~P~~i~v~W~~~g-~~~~~~~~~t~~~~~~~~~~~gtys~~--S~L~v~~~~w~~g-~~ytC~V   92 (108)
T d1ow0a2          19 LNELVTLTCLARGF--SPKDVLVRWLQGS-QELPREKYLTWASRQEPSQGTTTFAVT--SILRVAAEDWKKG-DTFSCMV   92 (108)
T ss_dssp             SSSEEEEEEEEEEE--SSSCCEEEEEETT-EECCGGGSEECCCEECSCSSSCCEEEE--EEEEEEHHHHHHT-CCEEEEE
T ss_pred             cCCceEEEEEEEEe--ECCCEEEEEEECC-eEcCCCceEcccceecccCCCCcEEEE--EEEEEcHHHhCCC-CEEEEEE
Confidence            57889999999876  3443 78999987 4442110         00123334332  2466665554445 7999999


Q ss_pred             eecC
Q psy12724        149 KHRL  152 (167)
Q Consensus       149 ~n~~  152 (167)
                      .+..
T Consensus        93 ~H~s   96 (108)
T d1ow0a2          93 GHEA   96 (108)
T ss_dssp             ECTT
T ss_pred             EeCC
Confidence            9865

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.0018  Score=41.88  Aligned_cols=68  Identities=16%  Similarity=0.256  Sum_probs=41.5

Q ss_pred             eCCcEEEEeeeCCccCCcce-eEEEEeCCCeeeEEee----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVA-VESWISDQGEELFVDM----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p-~i~W~k~~~~~l~~~~----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+.++.|-|.+.++.  |.. .++|++|+ ..+....    ....++.|.+  ...|.|..-..... ..|+|.+.+..
T Consensus        20 ~~~tv~L~Cl~~~f~--P~~i~v~W~~~g-~~~~~~~~~~~~~~~~~~y~~--~S~L~v~~~~w~~~-~~ytC~V~H~~   92 (104)
T d1o0va1          20 FPPTIQLLCLVSGYT--PGTIQITWLEDG-QVMDVDLSTASTTQEGELAST--QSELTLSQKHWLSD-RTYTCQVTYQG   92 (104)
T ss_dssp             CCSEEEEEEEEEEEC--CCCEEEEEEETT-EECCGGGEEEEEEEETTEEEE--EEEEEEEHHHHHTT-CCEEEEEEETT
T ss_pred             CCCeEEEEEEEEEEE--CCCcEEEEEECC-EEccCCceeeeEeCCCCeEEE--EEEEEECHHHcCCC-CEEEEEEEECC
Confidence            356788999998762  444 68999987 4432100    0112233333  23477766555555 67999999975

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=96.74  E-value=0.0039  Score=39.95  Aligned_cols=70  Identities=17%  Similarity=0.110  Sum_probs=38.6

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecC-CceEEEccCCeEE---EeecCcCCCCcceEEEeeecC
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTEST-DGKYLVLPSGELH---IRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~-~~r~~~~~~g~L~---I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ...++|.|.+.++... .-.|+|+||+ ..+.....+.. .....-..+|+..   .-.+..+|. ..|+|.+.+..
T Consensus        14 ~~~vtL~C~~~gFyP~-~I~v~W~~ng-~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~-~~ytC~V~H~s   87 (98)
T d1u58a1          14 EGGMRLRCFARDYYPA-DLEIRWWKDD-GGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLE-HVYSCRVKGIA   87 (98)
T ss_dssp             SSCEEEEEEEEEEBSS-CEEEEEEEEC-SSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCG-GGEEEEEEEGG
T ss_pred             CCcEEEEEEEEEEcCC-CCEEEEEECC-ccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCC-CEEEEEEEeCC
Confidence            4578999999887332 3467999987 33321110000 0111112234321   123456676 89999998765

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0013  Score=42.29  Aligned_cols=30  Identities=3%  Similarity=0.044  Sum_probs=23.1

Q ss_pred             EeCCcEEEEeecCCCCCCcceeeEEeeCCCceee
Q psy12724         23 IKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ   56 (167)
Q Consensus        23 ~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~   56 (167)
                      ..++...+.|.+.|.|.+   .|.|+|++. .+.
T Consensus        14 ~~~~~~~i~~~v~G~P~P---~i~W~~~g~-~l~   43 (103)
T d1wwbx_          14 TSDHHWCIPFTVKGNPKP---ALQWFYNGA-ILN   43 (103)
T ss_dssp             CCCCEEEEEEEEECSSCC---EEEEEETTE-EEC
T ss_pred             ccceeEEEEEEEEEeCCC---EEEEEECCE-Eee
Confidence            367888899999988864   899999754 443

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00077  Score=43.49  Aligned_cols=69  Identities=22%  Similarity=0.424  Sum_probs=41.8

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .++.+.|-|.+.++... .-.++|++|| ..+....     ..+.++.|.+.  ..|.|..-..... ..|+|.+.+..
T Consensus        19 ~~~~~tL~C~v~~f~P~-~i~v~W~~~g-~~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~w~~~-~~ytC~V~H~~   92 (102)
T d1rzfl2          19 QANKATLVCLISDFYPG-AVTVAWKADS-SPVKAGVETTTPSKQSNNKYAAS--SYLSLTPEQWKSH-RSYSCQVTHEG   92 (102)
T ss_dssp             HTTCEEEEEEEEEEBSS-CCEEEEEETT-EECCSSEEECCCEECTTSCEEEE--EEEEECHHHHHHS-SCEEEEEEETT
T ss_pred             cCCcEEEEEEEEeeCCC-CeEEEEEECC-EECCCCEEeCCcEECCCCEEEEE--EEEEECHHHhCCC-CEEEEEEEECC
Confidence            47789999999876322 2368999997 4442110     01223344332  2466665554444 67999999975

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.70  E-value=0.0016  Score=43.84  Aligned_cols=73  Identities=21%  Similarity=0.373  Sum_probs=46.7

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee------EE-----eeeecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL------FV-----DMTESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l------~~-----~~~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.++++.= ..--+.|.|.- ++.+      .+     .+++.-.+|+.+..+.     .|.|++++.+
T Consensus        11 ~~kPG~sl~LsC~~SG~~~-~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~e   89 (124)
T d1yedb1          11 LVRPGTSVKLSCKTSGYIF-TSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKSE   89 (124)
T ss_dssp             EECTTCEEEEEEEEESSCG-GGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCGG
T ss_pred             eECCCCCEEEEEEEcCCCc-cCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCCC
Confidence            5568999999999986411 22357887731 1111      11     0111224688776532     4999999999


Q ss_pred             CCCcceEEEeee
Q psy12724        139 DGYKSYQCRTKH  150 (167)
Q Consensus       139 D~~G~Y~C~a~n  150 (167)
                      |. +.|.|....
T Consensus        90 DT-AvYYCAR~~  100 (124)
T d1yedb1          90 DS-AVYFCTRWG  100 (124)
T ss_dssp             GC-EEEEEEECC
T ss_pred             cc-eEEEecccC
Confidence            99 999996543

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.70  E-value=0.0013  Score=42.36  Aligned_cols=68  Identities=18%  Similarity=0.365  Sum_probs=41.5

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+.+.|.|.+.++.. ..-.++|++|+ ..+....    ..+.++.|.+.  ..|.|..-...+. ..|+|.+.+..
T Consensus        19 ~~~~~L~C~v~~f~P-~~i~v~W~~~g-~~~~~~~~~~~~~~~dgt~s~~--S~L~v~~~~w~~~-~~ytC~V~H~~   90 (102)
T d1i1ca2          19 QSQVSITCMVKGFYP-PDIYTEWKMNG-QPQENYKNTPPTMDTDGSYFLY--SKLNVKKETWQQG-NTFTCSVLHEG   90 (102)
T ss_dssp             SSEEEEEEEEEEEBS-SCCEEEEEETT-EECSSEEECCCEECTTSCEEEE--EEEEEEHHHHHTT-CCEEEEEECTT
T ss_pred             CCeEEEEEEEEEEEC-CCCEEEEEECC-eeccCcEEcccEeCCCCCEEEE--EEEEECHHHhCCC-CEEEEEEEeCC
Confidence            567899999987622 23478999997 4432111    01223444432  3467766555554 68999999865

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.66  E-value=0.0013  Score=44.14  Aligned_cols=69  Identities=17%  Similarity=0.345  Sum_probs=43.7

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeee----------ecCCceEEEccCCeEEEeecCcCCCCc-ceEEE
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMT----------ESTDGKYLVLPSGELHIRDVGPEDGYK-SYQCR  147 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~----------~~~~~r~~~~~~g~L~I~~v~~~D~~G-~Y~C~  147 (167)
                      .+..+.|-|.+.++... .-.++|++|+ ..+.....          ...++.|.+.  ..|.|..-..+|. | .|+|.
T Consensus        19 ~~~~~tL~C~v~gf~P~-~i~v~W~~~g-~~~~~~~~t~~~~~~~~~~~~d~tys~s--S~L~v~~~~W~~~-g~~ytC~   93 (127)
T d1ogae2          19 HTQKATLVCLATGFYPD-HVELSWWVNG-KEVHSGVSTDPQPLKEQPALNDSRYSLS--SRLRVSATFWQNP-RNHFRCQ   93 (127)
T ss_dssp             HHSEEEEEEEEEEEBSS-CEEEEEEETT-EEECSSEEECSSCEESCTTSTTCCEEEE--EEEEEEHHHHTCT-TCEEEEE
T ss_pred             cCCcEEEEEEEEeccCC-CeEEEEEECC-EEccCcEEecceeeeecccCCCCeEEEE--EEEEECHHHhCCC-CCEEEEE
Confidence            36778999999886322 3368999987 44421100          0123445443  3588877776776 7 59999


Q ss_pred             eeecC
Q psy12724        148 TKHRL  152 (167)
Q Consensus       148 a~n~~  152 (167)
                      +.+..
T Consensus        94 V~H~~   98 (127)
T d1ogae2          94 VQFYG   98 (127)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            98853

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.65  E-value=0.001  Score=44.98  Aligned_cols=73  Identities=21%  Similarity=0.302  Sum_probs=44.9

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEee--------eecCCceEEEccCC-----eEEEeecCcCC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVDM--------TESTDGKYLVLPSG-----ELHIRDVGPED  139 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~~--------~~~~~~r~~~~~~g-----~L~I~~v~~~D  139 (167)
                      .+.+|+++.|.|.+.++.=.-..-+.|.|.- ++.+  .-.+        .+.-.+|+.+..|.     .|+|++++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~eD   90 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTED   90 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccccc
Confidence            4567999999999976411012357898731 1222  0001        11123466555422     49999999999


Q ss_pred             CCcceEEEee
Q psy12724        140 GYKSYQCRTK  149 (167)
Q Consensus       140 ~~G~Y~C~a~  149 (167)
                      . +.|.|...
T Consensus        91 t-AvYyCAr~   99 (127)
T d3cx5j1          91 T-ATYYCARS   99 (127)
T ss_dssp             C-EEEEEEEE
T ss_pred             c-eEEEeeee
Confidence            9 99999753

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.64  E-value=0.0015  Score=42.03  Aligned_cols=69  Identities=17%  Similarity=0.367  Sum_probs=42.6

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .++.+.|.|.+.++.. ..-.++|++|| .......    ....++.|.+.  ..|.|..-..... ..|+|.+.+..
T Consensus        18 ~~~~~tl~C~v~gf~P-~~i~v~W~~~g-~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~W~~~-~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMP-EDIYVEWTNNG-KTELNYKNTEPVLDSDGSYFMY--SKLRVEKKNWVER-NSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBS-SCCEEEEEETT-EECSSEEECCCEECTTSCEEEE--EEEEEEHHHHHTC-CCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeEC-CCcEEEEEECC-EEccCcEEccceeCCCCcEEEE--EEEEECHHHcCCC-CEEEEEEEeCC
Confidence            4778999999987632 23478999997 3321110    01233445432  3577766555555 68999999865

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.63  E-value=0.0066  Score=38.85  Aligned_cols=70  Identities=16%  Similarity=0.383  Sum_probs=42.4

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee---eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM---TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~---~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .++.+.|-|.+.++.....-.++|.+|+ ..+....   ....++.|.+.  ..|.|..-..... -.|+|.+.+..
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~-~~~~~~~~~~~~~~~gtys~~--S~L~v~~~~W~~~-~~ytC~V~H~s   90 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSG-KDITTVNFPPALASGGRYTMS--NQLTLPAVECPEG-ESVKCSVQHDS   90 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCC-SSCEEEECCCEECSSSCEEEE--EEEEECGGGSCTT-CEEEEEEEETT
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCC-CcCceeEeeeEecCCCCEEEE--EEEEEeHHHccCC-CEEEEEEEECC
Confidence            4678999999987521112356888876 3432211   01234455443  3577777665554 57999999864

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.59  E-value=0.0027  Score=40.87  Aligned_cols=69  Identities=14%  Similarity=0.251  Sum_probs=39.3

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCee-eEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEE-LFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~-l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .++.+.|-|.+.++.... -.++|.+++... +........++.|.+.  ..|.|..-.. +. +.|+|.+.+..
T Consensus        19 ~~~~~~l~Cl~~gf~P~~-i~v~W~~~~~~~~~~~~~~~~~~g~ys~~--S~L~v~~~~w-~~-~~ytC~V~H~~   88 (102)
T d1mjuh2          19 SGSSVTLGCLVKGYFPEP-VTLTWNSGSLSSGVHTFPAVLQSDLYTLS--SSVTVTSSTW-PS-QSITCNVAHPA   88 (102)
T ss_dssp             ---CEEEEEEEEEEBSSC-CEEEEGGGTBCTTEEECCCEEETTEEEEE--EEEEECTTTT-TT-SCCEEEEEEGG
T ss_pred             CCCcEEEEEEEeeeeCCC-eEEEECcCCccCCeEecccccCCCCEEEE--EEEEEehhHc-CC-ceEEEEEEECC
Confidence            578899999998874322 368997665211 1111001123445432  3566666655 46 78999999875

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.53  E-value=0.0027  Score=40.85  Aligned_cols=70  Identities=17%  Similarity=0.323  Sum_probs=39.2

Q ss_pred             eCCcEEEEeeeCCccCC-cceeEEEEeCCCeeeEEee----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVAD-YVAVESWISDQGEELFVDM----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~-p~p~i~W~k~~~~~l~~~~----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+.++.|-|.+.++..+ +.-.++|++|+. .+....    .++.++.|.+.  ..|.|..-..... -.|+|.+.+..
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~-~~~~~~~~~~~~~~~gtys~~--S~L~v~~~~W~~g-~~~tC~V~H~~   89 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDV-EVHTAQTHAPEKQSNSTLRSV--SELPIVERDWLNG-KTFKCKVNSGA   89 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSC-EECCCEECCCEECTTSCEEEE--EEEECCHHHHHTT-CCEEEEEECSS
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCc-cccCCEECCcEECCCCCEEEE--EEEEECHHHhcCC-CEEEEEEEeCC
Confidence            46789999999765211 224779999984 432111    01123333322  2355444333333 46999999875

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0026  Score=40.40  Aligned_cols=66  Identities=20%  Similarity=0.365  Sum_probs=38.6

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .++.+.|.|.+.++.. ..-.++|++|| ..+....     .++.++.|.+.  ..|.   +..++. ..|+|.+.+..
T Consensus        14 ~~~~~~L~C~~~gFyP-~~i~vtW~~~g-~~~~~~~~~~~~~~~~~~~~~~~--s~l~---v~~~~~-~~ytC~V~H~~   84 (95)
T d1k5na1          14 SDHEATLRCWALGFYP-AEITLTWQRDG-EDQTQDTELVETRPAGDRTFQKW--AAVV---VPSGEE-QRYTCHVQHEG   84 (95)
T ss_dssp             ETTEEEEEEEEEEEBS-SCCEEEEEETT-EECGGGCEECCCEECSSSCEEEE--EEEE---EETTCG-GGEEEEEECTT
T ss_pred             CCCCEEEEEEEEeEeC-CCCEEEEEECC-EEcCCCceeccEEcCCCCeEEEE--EEEE---EEcCCC-CEEEEEEEECc
Confidence            4678999999988732 23367999997 4432110     01122222221  1233   345565 78999999864

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0027  Score=40.72  Aligned_cols=69  Identities=17%  Similarity=0.361  Sum_probs=41.1

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .++.+.|-|.+.++... .-.++|++|+ .......    ..+.++.|.+.  ..|.|..-..... -.|+|.+.+..
T Consensus        18 ~~~~~tL~Clv~gf~P~-~i~v~W~~~g-~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~w~~g-~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPS-DIAVEWESNG-QPENNYKTTPPVLDSDGSFFLY--SKLTVDKSRWQQG-NVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSS-CCEEEEEETT-EEECCEEECCCEECTTSCEEEE--EEEEEEHHHHHTT-CCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECC-CCEEEEEECC-EECCCeEEcceEECCCCCEEEE--EEEEECHHHcCCC-CEEEEEEEeCC
Confidence            46779999999876322 2478999997 3432110    01123333332  2466665554443 57999999865

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.50  E-value=0.0005  Score=44.62  Aligned_cols=68  Identities=16%  Similarity=0.274  Sum_probs=43.3

Q ss_pred             eCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEee----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVDM----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .++.+.|.|.+.++.  |. -.|+|++|+ ..+....    ....++.|...  ..|.|..-+..+. ..|+|.+.+..
T Consensus        19 ~~~~~~l~C~~~gf~--P~~i~v~W~~~g-~~~~~~~~~~~~~~~~~tys~~--S~l~v~~~~w~~~-~~ytC~V~H~~   91 (104)
T d1nfde2          19 RTNKATLVCLVNDFY--PGSATVTWKANG-ATINDGVKTTKPSKQGQNYMTS--SYLSLTADQWKSH-NRVSCQVTHEG   91 (104)
T ss_dssp             HTTEECCCEEEEEEB--SSCCEEEEEETT-EEECSSCBCCCCBCSSSCEEEE--EBCCEEHHHHHTC-SCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEee--CCCCEEEEEECC-EECCCCEEeccccCCCceEEEE--EEEEEcHHHcCCC-CEEEEEEEECC
Confidence            467789999998752  43 378999997 4543111    01123344432  3466666666665 78999999875

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.002  Score=41.22  Aligned_cols=24  Identities=4%  Similarity=0.087  Sum_probs=17.6

Q ss_pred             CcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         26 NAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        26 ~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      ....+.|.+.|.|.+   .+.|+|++.
T Consensus        18 ~~~~i~~~v~G~P~P---~v~W~~n~~   41 (105)
T d1wwca_          18 LEHCIEFVVRGNPPP---TLHWLHNGQ   41 (105)
T ss_dssp             CEEEEEEEEECSSCC---EEEEEETTE
T ss_pred             EEEEEEEEEEEeCCC---eEEEEeCcc
Confidence            344577788888764   899999853

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.48  E-value=0.00062  Score=45.44  Aligned_cols=71  Identities=20%  Similarity=0.436  Sum_probs=45.2

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEee---------eecCCceEEEccCC-----eEEEeecCcC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVDM---------TESTDGKYLVLPSG-----ELHIRDVGPE  138 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~~---------~~~~~~r~~~~~~g-----~L~I~~v~~~  138 (167)
                      .+.+|+++.|.|.++++.- -.-.+.|.|.- ++.+  .-.+         ++.-.+|+.+..|.     .|.|++++.+
T Consensus        11 ~vkpg~sl~LsC~~SG~s~-~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~e   89 (117)
T d1b2wh1          11 VVQPGRSLKLSCLASGYIF-TSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRPE   89 (117)
T ss_dssp             EECTTSCEEEEEECCHHHH-TTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEECCCCC-cCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccCC
Confidence            5678999999999976411 12356787631 1111  0001         00113688887543     5999999999


Q ss_pred             CCCcceEEEe
Q psy12724        139 DGYKSYQCRT  148 (167)
Q Consensus       139 D~~G~Y~C~a  148 (167)
                      |. +.|.|..
T Consensus        90 DT-AvYYCAr   98 (117)
T d1b2wh1          90 DT-AVYYCAR   98 (117)
T ss_dssp             GC-EEEECCE
T ss_pred             cc-eEEEEcc
Confidence            99 9999954

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.46  E-value=0.0071  Score=37.74  Aligned_cols=64  Identities=20%  Similarity=0.266  Sum_probs=36.9

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCe-EEEeecCcCCCCcceEEEeeecC
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGE-LHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~-L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+.+.|-|.+.++.. +.-.++|++|+ ..+..      ........+|. ..++-++.... ..|+|.+.+..
T Consensus        13 ~~~~tl~Cl~~gF~P-~~i~v~W~~~g-~~~~~------~~~~~~~~~gtys~~s~~~~~~~-~~yTC~V~H~~   77 (86)
T d1hxma2          13 KNGTNVACLVKEFYP-KDIRINLVSSK-KITEF------DPAIVISPSGKYNAVKLGKYEDS-NSVTCSVQHDN   77 (86)
T ss_dssp             EETTEEEEEEESCBS-SCCEEEEECSS-EEEEC------CCEEEECTTSSEEEEEEEEETTT-TTCEEEEEETT
T ss_pred             CCCCEEEEEEeeEEC-CCCEEEEEECC-EEccC------cEEeeeccCCcEEEEEEEecCCC-CEEEEEEEECC
Confidence            456789999988743 23467999987 44421      11122233442 12222233444 68999999874

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0011  Score=42.96  Aligned_cols=32  Identities=6%  Similarity=-0.006  Sum_probs=21.5

Q ss_pred             EeEEEEEeCCcEEE---EeecCCCCCCcceeeEEeeCC
Q psy12724         17 VYDVFVIKGNAAVF---KCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        17 ~~~~~v~~G~~~~l---~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      |.++.+.+|..+.+   .|.+.|.|.   |.+.|++++
T Consensus         4 p~~~~~~~g~~~~~~ci~~~v~G~P~---P~v~W~~ng   38 (107)
T d1he7a_           4 PASVQLHTAVEMHHWCIPFSVDGQPA---PSLRWLFNG   38 (107)
T ss_dssp             CCCCCCCCCCCCCEEEEEEEECCSSC---CEEEEEETT
T ss_pred             CCEeEECCCeEEEEEEEEEEEEEecC---CeEEEEEee
Confidence            34455555655554   457888886   489999984

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.42  E-value=0.0049  Score=39.48  Aligned_cols=68  Identities=13%  Similarity=0.150  Sum_probs=41.0

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee--eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM--TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~--~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .++.+.|-|.+.++.. ..-.++|.+++. ......  ....++.|...  ..|.|..-.. +. |.|+|.+.+..
T Consensus        19 ~~~~~tl~Cl~~gf~P-~~i~v~W~~~~~-~~~~~~~~~~~~~g~~s~~--S~L~v~~~~w-~~-~~ytC~V~H~~   88 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFP-EPVTVAWNEGAL-SSGVLTVSAVLQSGLYTLS--SNTTVASGTW-PS-ASVTCLVAHPK   88 (101)
T ss_dssp             TCSEEEEEEEEEEEBS-SCCEEEEGGGTC-CTTEEECCCEEETTEEEEE--EEEEEETTTT-TT-SCCEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEeC-CCCEEEEecCCC-cccceeeeeecCCCCEEEE--EEEEEchhhc-CC-CeEEEEEEeCC
Confidence            4788999999987632 234689987763 211000  00123444432  2577765544 46 89999999875

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.0023  Score=40.00  Aligned_cols=50  Identities=28%  Similarity=0.468  Sum_probs=31.1

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEE
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCR  147 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~  147 (167)
                      .|+.+.|.|..+     ....|+|.||+...+..     .+        ..|.|.==...|+ |+|+|.
T Consensus        20 ~~~~V~L~C~t~-----eE~~I~W~kd~~se~~~-----~G--------ntltV~VkE~~~a-GnYTCh   69 (87)
T d3d85d1          20 PGEMVVLTCDTP-----EEDGITWTLDQSSEVLG-----SG--------KTLTIQVKEFGDA-GQYTCH   69 (87)
T ss_dssp             CCEEEEEECSSS-----CCSSCEEEETTCCCCCE-----ES--------SEEEEEECSGGGC-EEEEEE
T ss_pred             CccEEEEecCCC-----cccccEEeeCCcccccc-----CC--------CEEEEEEEeccCC-cceeEe
Confidence            467899999864     23358999997432211     12        2334333344698 999997

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.0017  Score=42.10  Aligned_cols=69  Identities=22%  Similarity=0.360  Sum_probs=41.6

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEe----e--eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVD----M--TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~----~--~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .++.+.|-|.+.++... .-.|+|++|| ..+...    .  .+..++.|.+.  ..|.|..-..... ..|+|.+.+..
T Consensus        19 ~~~~~tL~Cl~~~f~P~-~i~v~W~~ng-~~~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~W~~g-~~ytC~V~H~~   93 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPK-DINVKWKIDG-SERQNGVLNSWTDQDSKDSTYSMS--STLTLTKDEYERH-NSYTCEATHKT   93 (107)
T ss_dssp             TTTEEEEEEEEEEEBSS-CCEEEEEETT-EEECTTEEEEECCCCTTTCCEEEE--EEEEEEHHHHHTC-CEEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECC-CCEEEEEECC-EEccCCeEeccccEecCCCCEEEE--EEEEECHHHhCCC-CEEEEEEEECC
Confidence            46779999999876322 2478999987 443210    0  01123344432  2566666554444 68999999865

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=96.36  E-value=0.0035  Score=39.67  Aligned_cols=67  Identities=16%  Similarity=0.324  Sum_probs=38.6

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee------eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCc
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM------TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT  153 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~------~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~  153 (167)
                      ++.+.|-|.+.++.. +.-.++|++|+ ..+....      ..+.++.|.+.  ..|.   +..+|. ..|+|.+.+...
T Consensus        15 ~~~~~L~C~~~gFyP-~~i~v~W~~~g-~~~~~~~~~~~~~~~~~~~ty~~~--s~l~---v~~~~~-~~ytC~V~H~~~   86 (94)
T d1hyrc1          15 EGNITVTCRASGFYP-WNITLSWRQDG-VSLSHDTQQWGDVLPDGNGTYQTW--VATR---ICQGEE-QRFTCYMEHSGN   86 (94)
T ss_dssp             SSEEEEEEEEEEEBS-SCCEEEEEETT-EECCSTTSEECCCEECSSSCEEEE--EEEE---EETTCG-GGEEEEEEETTE
T ss_pred             CCCEEEEEEEEEEEC-CCcEEEEeECC-eEcCCCeEEcCceEECCCCcEEEE--EEEE---EcCCCC-CEEEEEEEECCC
Confidence            566899999988732 23378999997 4432110      00112223221  1233   445666 789999998753


Q ss_pred             c
Q psy12724        154 G  154 (167)
Q Consensus       154 ~  154 (167)
                      .
T Consensus        87 ~   87 (94)
T d1hyrc1          87 H   87 (94)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.31  E-value=0.0034  Score=40.26  Aligned_cols=68  Identities=22%  Similarity=0.400  Sum_probs=40.4

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+.+.|-|.+.++... .-.++|++|+ ..+....    ....++.|.+.  ..|.|..-..... ..|+|.+.+..
T Consensus        18 ~~~~tL~C~v~~f~P~-~i~v~W~~~g-~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~w~~~-~~ytC~V~H~~   89 (101)
T d1cqka_          18 KDLVSLTCMITDFFPE-DITVEWQWNG-QPAENYKNTQPIMDTDGSYFVY--SKLNVQKSNWEAG-NTFTCSVLHEG   89 (101)
T ss_dssp             SSEEEEEEEEEEEBSS-CCEEEEEETT-EECCSEEECCCEECTTSCEEEE--EEEEEEHHHHHTT-CCEEEEEECTT
T ss_pred             CCcEEEEEEEEEeECC-CcEEEEEECC-EEccCcEEeeeecCCCCcEEEE--EEEEECHHHhCCC-CEEEEEEEECC
Confidence            5568999999876322 3468999997 4432111    01123334332  2466655544455 68999999864

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.013  Score=36.69  Aligned_cols=32  Identities=19%  Similarity=0.287  Sum_probs=24.5

Q ss_pred             EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCc
Q psy12724         19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGG   53 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~   53 (167)
                      .+...+|++|.|.|..++...   ..+.|.+.+..
T Consensus         3 ~V~~~~G~svtL~C~~s~~~~---~~~~W~~~~~~   34 (97)
T d2nxyb1           3 VVLGKKGDTVELTCTASQKKS---IQFHWKNSNQI   34 (97)
T ss_dssp             EEEEETTSCEEECCBCSSSSC---CCEEEEETTCC
T ss_pred             EEEEEcCCcEEEEEEEecCCC---ceEEEEEeCCc
Confidence            456789999999999876543   36899987553

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0065  Score=39.17  Aligned_cols=68  Identities=25%  Similarity=0.373  Sum_probs=41.5

Q ss_pred             eCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEee----e--ecCCceEEEccCCeEEEeecCcCCCCcceEEEeeec
Q psy12724         79 KGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVDM----T--ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHR  151 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~----~--~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~  151 (167)
                      .+..+.|-|.+.++.  |. -.++|++|+ ..+....    .  +..++.|.+.  ..|.|..-..... ..|+|.+.+.
T Consensus        19 ~~~~~~L~Clv~~f~--P~~i~v~W~~ng-~~~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~W~~~-~~ytC~V~H~   92 (107)
T d1c5cl2          19 KSGTASVVCLLNNFY--PREAKVQWKVDN-ALQSGNSQESVTEQDSKDSTYSLS--STLTLSKADYEKH-KVYACEVTHQ   92 (107)
T ss_dssp             HTTEEEEEEEEEEEB--SSCCEEEEEETT-EECCSSEEEEECCCCTTTCCEEEE--EEEEEEHHHHTTC-CEEEEEEECT
T ss_pred             cCCceEEEEEEEEee--CCCCEEEEEECC-EECCCCEEEecccccCCCCcEEEE--EEEEECHHHhCCC-CEEEEEEEEC
Confidence            367799999998763  43 368999997 3432110    0  1123344432  3577766554443 5899999987


Q ss_pred             C
Q psy12724        152 L  152 (167)
Q Consensus       152 ~  152 (167)
                      .
T Consensus        93 ~   93 (107)
T d1c5cl2          93 G   93 (107)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0075  Score=38.86  Aligned_cols=71  Identities=15%  Similarity=0.261  Sum_probs=39.7

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeee----ecCCceEEEccCCeEEEeecCcC--CCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMT----ESTDGKYLVLPSGELHIRDVGPE--DGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~----~~~~~r~~~~~~g~L~I~~v~~~--D~~G~Y~C~a~n~~  152 (167)
                      ..+.+.|-|.+.++..++ -.++|++++. .+.....    ...++.|.+.  ..|.|..-+..  .. ..|+|.+.+..
T Consensus        20 ~~~~~~l~Cl~~gF~P~~-i~v~W~~~~~-~~~~~~~~~~~~~~~gtys~~--S~L~v~~~eW~~~~~-~~ytC~V~H~~   94 (105)
T d1dn0b2          20 DTSSVAVGCLAQDFLPDS-ITFSWKYKNN-SDISSTRGFPSVLRGGKYAAT--SQVLLPSKDVMAGTD-EHVVCKVQHPN   94 (105)
T ss_dssp             -CCSEEEEEEEEEEBSSC-CEEEEEETTS-CEECCEEECCCEEETTEEEEE--EEEEECTTCC---CC-CEEEEEEECTT
T ss_pred             CCCceEEEEEEecccCCc-EEEEEEECCc-cccCCEEcceEEccCCCEEEE--EEEEEcHHHhccCCC-CEEEEEEEECC
Confidence            467799999998874333 3679999874 3321110    0112333322  24555544431  22 37999999886


Q ss_pred             cc
Q psy12724        153 TG  154 (167)
Q Consensus       153 ~~  154 (167)
                      +.
T Consensus        95 ~~   96 (105)
T d1dn0b2          95 GN   96 (105)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.11  E-value=0.004  Score=40.32  Aligned_cols=67  Identities=18%  Similarity=0.320  Sum_probs=38.1

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .+.++.|-|.+.++... .-.++|++|+. .+....    ....++.|...  ..|.|   ..+|--..|+|.+.+..
T Consensus        23 ~~~~~~l~Clv~~f~P~-~i~v~W~~~g~-~~~~~~~~~~~~~~~gt~~~~--S~L~v---~~~~w~~~ytC~V~H~s   93 (107)
T d1hxmb2          23 LQKAGTYLCLLEKFFPD-VIKIHWEEKKS-NTILGSQEGNTMKTNDTYMKF--SWLTV---PEKSLDKEHRCIVRHEN   93 (107)
T ss_dssp             SSSCEEEEEEEEEESSC-CEEEEEEESSS-CCCCCCEECCCEECSSSEEEE--EEEEE---CTGGGGSCEEEEEEETT
T ss_pred             cCCcEEEEEEEeEEeCC-ceEEEEEECCe-EccCCEEccceecCCCeEEEE--EEEEE---ecccCCCeEEEEEEECC
Confidence            46789999999876322 34689999874 332110    00122333332  23555   44453036999999864

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0018  Score=41.78  Aligned_cols=78  Identities=10%  Similarity=0.228  Sum_probs=43.9

Q ss_pred             EeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC-ceEE--EeeeEEEecCeEEEeCCcEEEEeeeCCccCCcce-
Q psy12724         23 IKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ-DFVV--SQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVA-   98 (167)
Q Consensus        23 ~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~-~~v~--~g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p-   98 (167)
                      ..|+.+.|.|.|.++-++.+ .|+|++++ +.+..... ....  .|.|..... ..+..++...+.|.+.+. +-+.| 
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i-~v~W~~ng-~~v~~~~~~~~~~~~dgty~~~s~-l~v~~~~~~~ytC~V~H~-sl~~p~   92 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHPSDI-EVDLLKNG-ERIEKVEHSDLSFSKDWSFYLLYY-TEFTPTEKDEYACRVNHV-TLSQPK   92 (100)
T ss_dssp             CTTSCEEEEEEEEEEBSSCC-EEEEEETT-EECTTCEECCCEECTTSCEEEEEE-EEECCCSSCCEEEEEECT-TCSSCE
T ss_pred             cCCCCEEEEEEECccCCCCc-EEEEEECC-EecCCccccceecCCCCcEEEEEE-eEECCCCCCEEEEEEEeC-CCCCCe
Confidence            46899999999999855433 58999985 33321000 0011  355654321 233344555799999543 33444 


Q ss_pred             eEEEEe
Q psy12724         99 VESWIS  104 (167)
Q Consensus        99 ~i~W~k  104 (167)
                      ...|.+
T Consensus        93 ~~~wd~   98 (100)
T d1k5nb_          93 IVKWDR   98 (100)
T ss_dssp             EEECCT
T ss_pred             EEEccC
Confidence            336744

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.015  Score=35.77  Aligned_cols=57  Identities=14%  Similarity=0.288  Sum_probs=35.5

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecCc
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRLT  153 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~~  153 (167)
                      ...+|.|.|...      ...|+|+||+ ..+...          -..+..|-+-+.-..-. |.|.|.+.+..+
T Consensus        16 ~dg~V~L~Cn~~------~k~i~W~kdg-~~i~~~----------~~~~ktlnLG~~~~DPR-G~Y~C~~~~~~s   72 (81)
T d1sy6a1          16 EDGSVLLTCDAE------AKNITWFKDG-KMIGFL----------TEDKKKWNLGSNAKDPR-GMYQCKGSQNKS   72 (81)
T ss_dssp             SSSEEEEEECSC------SSEEEEEETT-EEEEEE----------ESSCCCEEEEEGGGCCE-EEEEEESSSSCC
T ss_pred             cCCeEEEEeCCC------CcEEEEecCC-eEeecc----------cCCcceeecCCcccCCC-cceEcCCCCcCC
Confidence            356799999753      3478999997 444211          01234455555555454 999998765544

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0085  Score=38.38  Aligned_cols=71  Identities=17%  Similarity=0.330  Sum_probs=41.2

Q ss_pred             EeCCcEEEEeeeCCccCCc-ceeEEEEeCCCeeeEEee----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         78 LKGNSAVLKCHIPSFVADY-VAVESWISDQGEELFVDM----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        78 ~~G~~a~l~C~~~~~~~~p-~p~i~W~k~~~~~l~~~~----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..+..+.|-|.+.++..+. .-.++|.+++ ..+....    .+..++.|.+.  ..|.|..-..... -.|+|.+.+..
T Consensus        16 ~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~-~~~~~~~~~~~~~~~~gtys~~--S~L~v~~~~W~~g-~~ytC~V~H~~   91 (105)
T d1l6xa1          16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDG-VEVHNAKTKPREEQYNSTYRVV--SVLTVLHQDWLNG-KEYKCKVSNKA   91 (105)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETT-EEECCCEECCCEECTTSCEEEE--EEEECCHHHHHTT-CCEEEEEECTT
T ss_pred             ccCCceEEEEEEEEEeCCCCeEEEEEeeCC-eECCCcEECCcEECCCCcEEEE--EEEEEcHHHcCCC-CEEEEEEEeCC
Confidence            3578899999997753222 2367899987 4432111    01123334332  2455555444444 58999999875

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.93  E-value=0.00046  Score=46.05  Aligned_cols=72  Identities=17%  Similarity=0.302  Sum_probs=44.3

Q ss_pred             EEEeCCcEEEEeeeCCccCCcceeEEEEeCC-Ceee--EEeeeec--------CCceEEEccCC-----eEEEeecCcCC
Q psy12724         76 HVLKGNSAVLKCHIPSFVADYVAVESWISDQ-GEEL--FVDMTES--------TDGKYLVLPSG-----ELHIRDVGPED  139 (167)
Q Consensus        76 ~v~~G~~a~l~C~~~~~~~~p~p~i~W~k~~-~~~l--~~~~~~~--------~~~r~~~~~~g-----~L~I~~v~~~D  139 (167)
                      .+.+|+++.|.|.++++.= -.--+.|.|.- ++.+  .-.+...        -.+|+.+..|.     .|.|++++.+|
T Consensus        11 ~vkPg~sl~LsC~~SG~~~-~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eD   89 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSL-TSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD   89 (116)
T ss_dssp             BCCTTSEECCEEECCSSCT-TSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCC
T ss_pred             eECCCCCeEEEEEEeCccc-ccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCC
Confidence            3557999999999986411 12357898731 1221  1111000        12566655432     49999999999


Q ss_pred             CCcceEEEee
Q psy12724        140 GYKSYQCRTK  149 (167)
Q Consensus       140 ~~G~Y~C~a~  149 (167)
                      . +.|.|...
T Consensus        90 T-AvYyCAr~   98 (116)
T d1fn4b1          90 T-GTYYCTRD   98 (116)
T ss_dssp             C-EEEEEEEE
T ss_pred             C-EEEEEEee
Confidence            9 99999553

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.80  E-value=0.021  Score=36.88  Aligned_cols=34  Identities=15%  Similarity=0.215  Sum_probs=23.6

Q ss_pred             EEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         19 DVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      .+.+..|+++.|.|............+.|.+.+.
T Consensus        11 ~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~   44 (126)
T d1pkoa_          11 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPF   44 (126)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--
T ss_pred             CEEEEcCCcEEEEEEEECcCCCCceEEEEeecCC
Confidence            3789999999999987533322234689998754

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.78  E-value=0.0059  Score=39.44  Aligned_cols=33  Identities=12%  Similarity=0.202  Sum_probs=23.2

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      ++....|.+|+++.|.|..  .|.. +..+.|.|++
T Consensus         5 ~~~P~~v~~G~~V~L~c~~--~p~~-~~~~~W~k~~   37 (107)
T d1l6za1           5 EAVPPQVAEDNNVLLLVHN--LPLA-LGAFAWYKGN   37 (107)
T ss_dssp             EEESSSCCTTCCEEEEEES--CCTT-CSEEEEEESS
T ss_pred             EEcCCcccCCCCEEEEecC--CCCC-ceEEEEEeCc
Confidence            3333457899999999973  3333 3579999864

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0096  Score=38.04  Aligned_cols=72  Identities=18%  Similarity=0.364  Sum_probs=39.9

Q ss_pred             EeCCcEEEEeeeCCccCCc-ceeEEEEeCCCeeeEEee---eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         78 LKGNSAVLKCHIPSFVADY-VAVESWISDQGEELFVDM---TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        78 ~~G~~a~l~C~~~~~~~~p-~p~i~W~k~~~~~l~~~~---~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..+.+++|.|.+.++..+. .-.+.|.++++.......   ....++.|.+.  ..|.|..-..... ..|+|.+.+..
T Consensus        14 ~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~--S~L~v~~~~w~~g-~~~tC~V~H~~   89 (103)
T d1fp5a1          14 FIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVT--STLPVGTRDWIEG-ETYQCRVTHPH   89 (103)
T ss_dssp             HTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEE--EEEECCHHHHHTT-CCEEEEEECSS
T ss_pred             hhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEE--EEEEEcHHHhCCC-CeEEEEEEECC
Confidence            3578899999997652211 235688888743321000   01123334322  2455554443334 68999999875

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=95.74  E-value=0.0069  Score=39.91  Aligned_cols=71  Identities=18%  Similarity=0.343  Sum_probs=40.4

Q ss_pred             EeCCcEEEEeeeCCccCCc-ceeEEEEeCCCeeeEEee----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         78 LKGNSAVLKCHIPSFVADY-VAVESWISDQGEELFVDM----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        78 ~~G~~a~l~C~~~~~~~~p-~p~i~W~k~~~~~l~~~~----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..+.++.|-|.+.++..++ .-.++|++|+ ..+....    ....++.|.+.  ..|.|..-..... ..|+|.+.+..
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g-~~~~~~~~~~~~~~~~gt~s~~--S~L~v~~~eW~~g-~~ytC~V~H~~  105 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNN-VEVHTAQTQTHREDYNSTLRVV--SALPIQHQDWMSG-KEFKCKVNNKD  105 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETT-EECSSTTCBCCEEECSSSEEEE--EEEECCHHHHHTT-CEEEEEEECTT
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCC-cccCCCEECccEECCCCcEEEE--EEEEEeHHHhCCC-CeEEEEEEECC
Confidence            3578899999997653222 3467999997 3332110    01122333322  2355544443343 57999999875

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.48  E-value=0.025  Score=35.61  Aligned_cols=34  Identities=18%  Similarity=0.238  Sum_probs=24.9

Q ss_pred             eEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         18 YDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        18 ~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      ..+....|+++.|.|.......+ +..|.|.+++.
T Consensus         3 ~tV~G~~G~sV~L~~~~~~~~~~-i~~I~W~~~~~   36 (98)
T d1hnga1           3 GTVWGALGHGINLNIPNFQMTDD-IDEVRWERGST   36 (98)
T ss_dssp             EEEEEETTSCEEECCTTCCCCTT-EEEEEEEETTE
T ss_pred             cEEEEecCCCEEEECCCCCCccc-hheeeeecccc
Confidence            45678889999999975433333 56899999754

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.03  Score=35.55  Aligned_cols=69  Identities=17%  Similarity=0.358  Sum_probs=40.1

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee--eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM--TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~--~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .++.+.|-|.+.++... .-.++|.+++...-....  ..+.++.|.+.  ..|.|..-.. .. ..|+|.+.+..
T Consensus        19 ~~~~~tl~Cl~~~f~P~-~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~--S~L~v~~~~w-~~-~~ytC~V~H~~   89 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPE-PVTVSWNSGALTSGVHTFPAVLQSSGLYSLS--SVVTVPSSSL-GT-QTYICNVNHKP   89 (103)
T ss_dssp             ETTEEEEEEEEEEEBSS-CCEEEEGGGTBCTTEEECCCEECTTSCEEEE--EEEEEEGGGG-GT-CCCEEEEEEGG
T ss_pred             CCCeEEEEEEEEeEeCC-CeEEEECcCCCCCCEEECCCeECCCCCEEEE--EEEEECcccc-CC-CeEEEEEEeCC
Confidence            47789999999876322 236899777532101100  01223344332  2466665544 34 67999999975

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=95.36  E-value=0.013  Score=37.34  Aligned_cols=76  Identities=8%  Similarity=0.213  Sum_probs=42.6

Q ss_pred             EeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc--eEE--EeeeEEEecCeEEEeCCcEEEEeeeCCccCCcce
Q psy12724         23 IKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD--FVV--SQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVA   98 (167)
Q Consensus        23 ~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~--~v~--~g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p   98 (167)
                      ..++++.|.|.|.++-++.+ .|+|++++. .+......  ..-  .|.|...- ...+..++...+.|.+... +-+.|
T Consensus        15 ~~~~~~tL~C~~~gFyP~~i-~v~W~~ng~-~~~~~~~~~~~~~~~dgty~~~s-~L~v~~~~~~~ytC~V~H~-sl~~p   90 (98)
T d1hdmb1          15 NTREPVMLACYVWGFYPAEV-TITWRKNGK-LVMHSSAHKTAQPNGDWTYQTLS-HLALTPSYGDTYTCVVEHI-GAPEP   90 (98)
T ss_dssp             SSSCSEEEEEEEEEEBSSCC-EEEEEETTE-ECCCCCSBCCCEECSSSCEEEEE-EEEECCCTTCCEEEEEECT-TSSSC
T ss_pred             cCCCcEEEEEEEEEEECCCC-EEEEEECCE-eccCCeEeCceEECCCCCEEEEE-EeEcCCCCCCEEEEEEEeC-CCCCC
Confidence            34678999999999855434 699999853 33221111  111  35565322 1233344445689999643 33444


Q ss_pred             -eEEE
Q psy12724         99 -VESW  102 (167)
Q Consensus        99 -~i~W  102 (167)
                       ...|
T Consensus        91 ~~~~w   95 (98)
T d1hdmb1          91 ILRDW   95 (98)
T ss_dssp             EEEEE
T ss_pred             eeEEc
Confidence             3467

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.053  Score=33.91  Aligned_cols=63  Identities=14%  Similarity=0.222  Sum_probs=38.3

Q ss_pred             eCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceEE---EeeeEEEecCeEEEeCCcEEEEeeeC
Q psy12724         24 KGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFVV---SQSYTVNIMDEHVLKGNSAVLKCHIP   90 (167)
Q Consensus        24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v~---~g~y~c~~~~~~v~~G~~a~l~C~~~   90 (167)
                      .|+.+.|.|.+.|+-++  +.|+|++++. .+.........   .|.|...-. ..+.......+.|.+.
T Consensus        15 s~~~~~L~C~~~g~~P~--~~V~W~~n~~-~~~~~~~~~~~~~~~g~y~v~S~-L~v~~~~~~~~tC~V~   80 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPE--PHLSWLENGE-ELNAINTTVSQDPETELYAVSSK-LDFNMTTNHSFMCLIK   80 (95)
T ss_dssp             STTEEEEEEEEEEESSC--EEEEEEESSC-EECCSEEEEEECTTTCCEEEEEE-EEEETTSCEEEEEEEE
T ss_pred             CCCEEEEEEEECcccCC--CEEEEecCCc-EecccceeeEecCCCccEEEEEE-EEccCCccceEEEEEE
Confidence            57788999999985333  4899999754 34221100011   255664432 2344566788999985

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.84  E-value=0.0095  Score=37.89  Aligned_cols=64  Identities=9%  Similarity=0.259  Sum_probs=36.2

Q ss_pred             eCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc--eEE--EeeeEEEecCeEEEeCCcEEEEeeeCC
Q psy12724         24 KGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD--FVV--SQSYTVNIMDEHVLKGNSAVLKCHIPS   91 (167)
Q Consensus        24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~--~v~--~g~y~c~~~~~~v~~G~~a~l~C~~~~   91 (167)
                      .|+.+.|.|.+.++-++.+ .|+|++++. .+.. ...  ...  .|.|+.... ..+..++...+.|.+.+
T Consensus        17 ~~~~~tL~C~v~gf~P~~i-~V~W~~~g~-~~~~-~~~~~~~~~~dgtf~~~s~-l~v~~~~~~~ytC~V~H   84 (99)
T d1lk2b_          17 NGKPNILNCYVTQFHPPHI-EIQMLKNGK-KIPK-VEMSDMSFSKDWSFYILAH-TEFTPTETDTYACRVKH   84 (99)
T ss_dssp             TTSCEEEEEEEEEEBSSCC-EEEEEETTE-ECTT-CEEEEEEECTTCCEEEEEE-EEECCCSSCCEEEEEEC
T ss_pred             CCCcEEEEEEEEEEECCCc-EEEEeeCCe-ecCC-cEECceeECCCCCEEEEEE-eEecCcCCCEEEEEEEe
Confidence            5888999999999754433 599999854 2211 000  011  244544321 12233444569999854

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.66  E-value=0.0098  Score=38.63  Aligned_cols=70  Identities=20%  Similarity=0.372  Sum_probs=38.7

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEee-eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDM-TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~-~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      .++.+.|-|.+.++... .-.|+|.+++........ ..+.++.|.+.  ..|.|..-..... -.|+|.+.+..
T Consensus        26 ~~~~~tL~C~v~gf~P~-~i~v~W~~~~~~~~~~~~~~~~~dgtys~~--S~L~v~~~~W~~~-~~ytC~V~H~~   96 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPA-DINVEWDSSEPSDYKNTPPVFDTDGSFFLY--SRLKVDTDAWNNG-ESFTCSVMHEA   96 (111)
T ss_dssp             CTTSCCEEEEEESCCSS-CCEEESSSCCTTTEEEEEEECCSSCCCEEE--EEECCCSSCCHHH-HCCEEEEEETT
T ss_pred             cCCceEEEEEEEeeECC-CcEEEEeeCCCCCcEEcccEECCCCcEEEE--EEEEECHHHhCCC-CEEEEEEEeCC
Confidence            46778999999876322 347899888642221110 01223334332  2344443332223 46999999975

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.65  E-value=0.011  Score=38.95  Aligned_cols=37  Identities=16%  Similarity=0.100  Sum_probs=30.3

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      +..++.|.+..+.+|+++.|.|.+.+....   .+.|+|.
T Consensus         2 ~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~---~v~Wyrq   38 (122)
T d1nezg_           2 PELRIFPKKMDAELGQKVDLVCEVLGSVSQ---GCSWLFQ   38 (122)
T ss_dssp             CEEEEESSCEEECTTCCEEEEEEEESCCSS---CEEEEEE
T ss_pred             CceEEcCCEEEECCCCCEEEEEEEcCccCC---CEEEEEE
Confidence            567788999999999999999998766543   5899873

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.0021  Score=41.26  Aligned_cols=71  Identities=21%  Similarity=0.299  Sum_probs=38.1

Q ss_pred             EeCCcEEEEeeeCCccCCcc-eeEEEEeCCCeeeEEeee-ecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         78 LKGNSAVLKCHIPSFVADYV-AVESWISDQGEELFVDMT-ESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        78 ~~G~~a~l~C~~~~~~~~p~-p~i~W~k~~~~~l~~~~~-~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..++++.|.|.+.++ ..|. -.|+|+++++........ ...++.|.+.  ..|.|..-..... -.|+|.+.+..
T Consensus        16 ~~~~~~tL~C~v~~f-~~p~~i~v~W~~~~~~~~~~~~~~~~~~gt~s~~--S~L~v~~~~W~~g-~~ftC~V~H~~   88 (101)
T d1ow0a1          16 LLGSEANLTCTLTGL-RDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVS--SVLPGCAEPWNHG-KTFTCTAAYPE   88 (101)
T ss_dssp             HHCSSCCCEEEETTC-CSCCCCCCCBSSCSSCCCEECCCCCCSTTCCCEE--EECTTTHHHHHHT-CEEEEEECCSS
T ss_pred             ccCCCeEEEEEEeCC-CCCcceEEEEEECCceeeeecceEECCCCCEEEE--EEEEEcHHHcCCC-CeEEEEEEeCC
Confidence            358899999999875 2243 368999887433221100 0111222111  1233332222234 59999999875

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=94.32  E-value=0.026  Score=36.04  Aligned_cols=78  Identities=12%  Similarity=0.224  Sum_probs=42.4

Q ss_pred             EeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--ceEE--EeeeEEEecCeEEEeCCcEEEEeeeCCccCCcce
Q psy12724         23 IKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--DFVV--SQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVA   98 (167)
Q Consensus        23 ~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--~~v~--~g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p   98 (167)
                      ..|+.+.|.|.|.++-++.+ .|+|++++ +.+..+..  ..+-  .|.|+..-. ..+..++.-.+.|.+.+. +-..|
T Consensus        17 ~~~~~~tL~C~v~gF~P~~i-~v~W~~ng-~~~~~~~~~~~~~~~~dgty~~~S~-L~v~~~~~~~ytC~V~H~-sl~~p   92 (101)
T d1fnga1          17 NLGEPNILICFIDKFSPPVV-NVTWLRNG-RPVTEGVSETVFLPRDDHLFRKFHY-LTFLPSTDDFYDCEVDHW-GLEEP   92 (101)
T ss_dssp             CTTSCEEEEEEEEEEBSSCC-EEEEEETT-EEECSSEEECCCEECSSSCEEEEEE-EEECCCTTCCEEEEEECT-TCSSC
T ss_pred             cCCCCEEEEEEEEeEECCCC-EEEEEECC-eecCCCcEeCeEEECCCCcEEEEEE-eEEcCCCCCEEEEEEEEC-CCCCC
Confidence            34788899999999854433 69999984 33432100  0011  345554321 233334444699999543 22333


Q ss_pred             -eEEEEe
Q psy12724         99 -VESWIS  104 (167)
Q Consensus        99 -~i~W~k  104 (167)
                       ...|..
T Consensus        93 i~~~w~~   99 (101)
T d1fnga1          93 LRKHWEF   99 (101)
T ss_dssp             EEEEECC
T ss_pred             ceEEccc
Confidence             346743

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.24  E-value=0.034  Score=34.47  Aligned_cols=56  Identities=14%  Similarity=0.313  Sum_probs=33.7

Q ss_pred             eCCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         79 KGNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        79 ~G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      +..+|.|.|...      ...|+|++++ ..+...    ..      ....|-+=+.-..- -|.|.|.+....
T Consensus        21 ~dGsV~L~Cn~~------~k~i~W~kdg-~~i~~~----~~------~~ktlnLG~~~~DP-RGiY~C~g~~~~   76 (86)
T d1jbja1          21 GDGSVLLTCGLT------DKTIKWLKDG-SIISPL----NA------TKNTWNLGNNAKDP-RGTYQCQGAKET   76 (86)
T ss_dssp             SSCEEEEECSSS------CSCEEEEETT-EECCCS----SC------CSSCCEEEETTSCC-EEEEEEEESSCE
T ss_pred             cCCeEEEEeCCC------CcEEEEecCC-ceeccc----cc------ccceeecCCcccCC-CcceEcCCCccc
Confidence            456799999764      2368999997 343210    00      11235554444444 499999876553

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=94.23  E-value=0.028  Score=35.80  Aligned_cols=78  Identities=12%  Similarity=0.311  Sum_probs=41.8

Q ss_pred             EEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecC--CceEE--EeeeEEEecCeEEEeCCcEEEEeeeCCccCCcc
Q psy12724         22 VIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN--QDFVV--SQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYV   97 (167)
Q Consensus        22 v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~--~~~v~--~g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~   97 (167)
                      +..|+++.|.|.|.++-++.+ .|+|++++. .+....  ....-  .|.|+-... ..+...+...+.|++.+. +-+.
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i-~v~W~~ng~-~v~~~~~~t~~~~~~dgtf~~~s~-l~v~~~~~~~ytC~V~H~-sl~~   89 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVI-NITWLRNSK-SVADGVYETSFFVNRDYSFHKLSY-LTFIPSDDDIYDCKVEHW-GLEE   89 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCC-EEEEEESSS-BCCSSEEECCCEECTTSCEEEEEE-EEECCCTTCCEEEEEECT-TSSS
T ss_pred             cccCCCEEEEEEEEeEECCCC-EEEEEeCCe-eccCCceeeeeEECCCCCEEEEEE-eEEcCCCCCEEEEEEEEC-CCCC
Confidence            446889999999999754433 699999853 332210  00011  234543221 122233444689999543 3344


Q ss_pred             e-eEEEE
Q psy12724         98 A-VESWI  103 (167)
Q Consensus        98 p-~i~W~  103 (167)
                      | ...|.
T Consensus        90 pi~~~w~   96 (100)
T d1muja1          90 PVLKHWS   96 (100)
T ss_dssp             CEEEEEC
T ss_pred             ceeeEEC
Confidence            4 33664

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.05  E-value=0.042  Score=34.44  Aligned_cols=72  Identities=13%  Similarity=0.225  Sum_probs=39.1

Q ss_pred             eCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc--eEE--EeeeEEEecCeEEEeCCcEEEEeeeCCccCCccee
Q psy12724         24 KGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD--FVV--SQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVAV   99 (167)
Q Consensus        24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~--~v~--~g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p~   99 (167)
                      .++.+.|.|.|.++-+..+ .|+|++++. .+......  ..-  .|.|.-.. ...+..++...+.|++... +-+.|.
T Consensus        14 ~~~~~~L~C~~~gFyP~~i-~vtW~~~g~-~~~~~~~~~~~~~~~~~~~~~~s-~l~v~~~~~~~ytC~V~H~-~L~~pl   89 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEI-TLTWQRDGE-DQTQDTELVETRPAGDRTFQKWA-AVVVPSGEEQRYTCHVQHE-GLPKPL   89 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCC-EEEEEETTE-ECGGGCEECCCEECSSSCEEEEE-EEEEETTCGGGEEEEEECT-TCSSCE
T ss_pred             CCCCEEEEEEEEeEeCCCC-EEEEEECCE-EcCCCceeccEEcCCCCeEEEEE-EEEEEcCCCCEEEEEEEEC-cCCCCc
Confidence            4678999999999866544 589999853 33221000  111  22333221 1233445556789998643 334443

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.03  E-value=0.032  Score=35.78  Aligned_cols=36  Identities=14%  Similarity=0.325  Sum_probs=28.8

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      +.++.|..+.+.+|+++.|.|...+....   .+.|++.
T Consensus         2 ~v~Q~p~s~~~~~G~svtl~C~~s~~~~~---~~~WYrq   37 (111)
T d1bd2d1           2 QVKQNSPSLSVQEGRISILNCDYTNSMFD---YFLWYKK   37 (111)
T ss_dssp             CEECCCSEEEEETTSCEEEEEEECCTTCC---EEEEEEE
T ss_pred             ceEccCCEEEEcCCCCEEEEEEeCCCCCC---eEEEEEE
Confidence            44567888999999999999998776543   5889874

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.91  E-value=0.025  Score=35.10  Aligned_cols=65  Identities=12%  Similarity=0.218  Sum_probs=37.5

Q ss_pred             eCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc--eE--EEeeeEEEecCeEEEeCCcEEEEeeeCC
Q psy12724         24 KGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD--FV--VSQSYTVNIMDEHVLKGNSAVLKCHIPS   91 (167)
Q Consensus        24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~--~v--~~g~y~c~~~~~~v~~G~~a~l~C~~~~   91 (167)
                      .++.+.|.|.|.++-++.+ .|+|++++. .+......  ..  -.|.|.... ...+..++...+.|.+.+
T Consensus        14 ~~~~~~L~C~a~gFyP~~i-~v~W~~~g~-~~~~~~~~~~~~~~~~gt~~~~s-~l~v~~~~~~~ytC~V~H   82 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADI-TLTWQLNGE-ELIQDMELVETRPAGDGTFQKWA-SVVVPLGKEQYYTCHVYH   82 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCC-EEEEEETTE-EECTTCEECCCEECSSSCEEEEE-EEEEESSTTTTCEEEEEC
T ss_pred             CCCCEEEEEEEEeEECCCC-EEEEEECCE-EeCCCEEECcEecCCCCcEEEEE-EEEecCcCCCEEEEEEEE
Confidence            4678999999999765544 589999853 33211100  01  134454432 133444555568999853

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=93.88  E-value=0.032  Score=35.93  Aligned_cols=34  Identities=15%  Similarity=0.291  Sum_probs=26.8

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      .+|..+.+.+|+++.|.|...+....  ..+.|+|.
T Consensus         3 ~qP~~~~~~~G~svtl~C~~s~~~~~--~~~~WYrQ   36 (112)
T d1kgcd1           3 TQPNSMESNEEEPVHLPCNHSTISGT--DYIHWYRQ   36 (112)
T ss_dssp             ECCSEEEEETTSCEEEEEEESCCCTT--CCEEEEEE
T ss_pred             ECCCEEEECCCCCEEEEEEEeCCCcc--ccEEEEEE
Confidence            56778999999999999998765442  24899985

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.031  Score=34.97  Aligned_cols=65  Identities=18%  Similarity=0.328  Sum_probs=36.4

Q ss_pred             eCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE-E--EeeeEEEecCeEEEeCCcEEEEeeeCC
Q psy12724         24 KGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV-V--SQSYTVNIMDEHVLKGNSAVLKCHIPS   91 (167)
Q Consensus        24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v-~--~g~y~c~~~~~~v~~G~~a~l~C~~~~   91 (167)
                      .|+.+.|.|.|.++-+..+ .|+|++++. .+........ .  .|.|..... ..+..++...+.|.+.+
T Consensus        14 ~~~~~tL~C~~~gFyP~~i-~v~W~~ng~-~~~~~~~~~~~~~~~~t~~~~s~-l~~~~~~~~~ytC~V~H   81 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKI-DVHWTRAGE-VQEPELRGDVLHNGNGTYQSWVV-VAVPPQDTAPYSCHVQH   81 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCE-EEEEEETTE-ECCCSEEEEEEETTTTEEEEEEE-EEECTTCCSCEEEEEEE
T ss_pred             CCCCEEEEEEEEeEECCCC-EEEEEECCE-ECCCcEEeeeecCCCCeEEEEEE-eEeCCCCCCEEEEEEEE
Confidence            4889999999999654433 699999853 2221000000 0  234443321 22334455579999853

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=93.81  E-value=0.022  Score=36.74  Aligned_cols=36  Identities=14%  Similarity=0.206  Sum_probs=28.8

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      .-.+.|..+.+.+|+++.|.|..++...   ..+.|+|.
T Consensus         2 ~V~Q~P~~v~v~~G~sv~L~C~~s~~~~---~~~~Wyrq   37 (113)
T d2bnqd1           2 EVTQIPAALSVPEGENLVLNCSFTDSAI---YNLQWFRQ   37 (113)
T ss_dssp             CEECSSSEEEEETTCCEEEEEEESCCCE---EEEEEEEE
T ss_pred             CcEeeCCEEEEcCCCCEEEEEEEecCcc---cCCeEEEe
Confidence            3456788899999999999999876543   46899974

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=93.80  E-value=0.042  Score=35.13  Aligned_cols=79  Identities=16%  Similarity=0.292  Sum_probs=43.9

Q ss_pred             EeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE---EEeeeEEEecCeEEEeCCcEEEEeeeCCccCCcce-
Q psy12724         23 IKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV---VSQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVA-   98 (167)
Q Consensus        23 ~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v---~~g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p-   98 (167)
                      ..|+.+.|.|.|.++-++.+ .|+|++++. .+........   -.|.|...-. ..+...+.-.+.|.+.+. +-..| 
T Consensus        16 e~~~~~tL~C~v~gF~P~~i-~V~W~~ng~-~~~~~~~~~~~~~~dgty~~~S~-L~v~~~~~~~ytC~V~H~-~l~~p~   91 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPML-TVNWHDHSV-PVEGFGPTFVSAVDGLSFQAFSY-LNFTPEPSDIFSCIVTHE-PDRYTA   91 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCE-EEEEEETTE-ECSSCCCEEEEEETTTEEEEEEE-EEECCCTTCCEEEEEEET-TTTEEE
T ss_pred             hcCCCeEEEEEEeeEECCCC-EEEEEECCe-ecCCcEeceEEeCCCCcEEEEEE-EEEecCCCCEEEEEEEeC-CCCCCE
Confidence            45889999999999755434 699999854 2221111111   1355554321 122233334699999643 33444 


Q ss_pred             eEEEEeC
Q psy12724         99 VESWISD  105 (167)
Q Consensus        99 ~i~W~k~  105 (167)
                      ...|..+
T Consensus        92 ~~~w~~~   98 (103)
T d1hdma1          92 IAYWVPR   98 (103)
T ss_dssp             EEEECCC
T ss_pred             EEEecCC
Confidence            3477654

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=93.63  E-value=0.042  Score=35.23  Aligned_cols=33  Identities=24%  Similarity=0.399  Sum_probs=25.6

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      +|.++.|.+|+++.|.|...+....  ..+.|+|.
T Consensus         4 QP~svsv~~G~~vtl~C~~s~~~~~--~~l~WYrq   36 (110)
T d2esvd1           4 QPPSMDCAEGRAANLPCNHSTISGN--EYVYWYRQ   36 (110)
T ss_dssp             CCSEEEEETTSCEEEEEECTTCCTT--EEEEEEEE
T ss_pred             cCCEEEECCCCCEEEEEEEcCCCCC--CeEEEEEE
Confidence            4668999999999999997654432  35899975

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.59  E-value=0.048  Score=35.20  Aligned_cols=35  Identities=23%  Similarity=0.405  Sum_probs=27.9

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      ++.|..+.+.+|+++.|.|...+....  ..+.|+|.
T Consensus         3 tqsP~~l~v~~G~~vtl~C~~~~~~~~--~~~~Wyrq   37 (114)
T d3bp5a1           3 TFYPAWLTVSEGANATFTCSLSNWSED--LMLNWNRL   37 (114)
T ss_dssp             EEESSEEEEETTCCEEEEEEESCCCTT--CEEEEEEE
T ss_pred             eECCCeEEECCCCCEEEEEEECCCCCc--ceEEEEEE
Confidence            467888999999999999998765443  25899874

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=0.017  Score=37.48  Aligned_cols=37  Identities=16%  Similarity=0.179  Sum_probs=29.7

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      ++++.|.+.++.+|+++.|.|........  ..+.|+|.
T Consensus         2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~~--~~i~WyrQ   38 (114)
T d1akjd_           2 QFRVSPLDRTWNLGETVELKCQVLLSNPT--SGCSWLFQ   38 (114)
T ss_dssp             CEEEECCSCCCCTTCCEEEEEEECCSSCC--SCEEEEEE
T ss_pred             CeeECCCcEeccCCCcEEEEEEeCCCcCC--CCEEEEEE
Confidence            57788999999999999999998765432  25899885

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=93.53  E-value=0.045  Score=35.19  Aligned_cols=35  Identities=14%  Similarity=0.274  Sum_probs=27.7

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      .+.|..+.+.+|+++.|.|.+.+....  ..+.|+|.
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~--~~v~Wyrq   36 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISKL--TSIYWLRE   36 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCS--SEEEEEEE
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCCC--CceEEEEe
Confidence            357888999999999999999875432  36899875

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=93.45  E-value=0.043  Score=35.26  Aligned_cols=35  Identities=14%  Similarity=0.282  Sum_probs=28.1

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      .++.|..+.+.+|+++.|.|........   .+.|+|.
T Consensus         4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~---~~~Wyrq   38 (107)
T d1c5cl1           4 LTQSPSSLSASLGERVSLTCRTSQEISG---YLSWLQQ   38 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT---CEEEEEE
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCCC---CEEEEEc
Confidence            3466888999999999999998776543   4899974

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=93.30  E-value=0.022  Score=36.01  Aligned_cols=65  Identities=17%  Similarity=0.336  Sum_probs=36.0

Q ss_pred             eCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecC-CceE--EEeeeEEEecCeEEEeCCcEEEEeeeCC
Q psy12724         24 KGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN-QDFV--VSQSYTVNIMDEHVLKGNSAVLKCHIPS   91 (167)
Q Consensus        24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~-~~~v--~~g~y~c~~~~~~v~~G~~a~l~C~~~~   91 (167)
                      .++.+.|.|.|.++-++.+ .|+|++++. .+.... ....  -.|.|..... ..+..++...+.|.+.+
T Consensus        15 ~~~~vtL~C~a~gF~P~~i-~v~W~~~~~-~~~~~~~~~~~~~~dgty~~~S~-L~v~~~~~~~ytC~V~H   82 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPV-WVMWMRGEQ-EQQGTQLGDILPNANWTWYLRAT-LDVADGEAAGLSCRVKH   82 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCE-EEEEEETTE-ECTTCEECCCEECTTSCEEEEEE-EEEEGGGCTTEEEEEEE
T ss_pred             CCCeEEEEEEEEEEECCCc-EEEEEECcc-cCCCceeCccEeCCCCcEEEEEE-EEEeCccCCEEEEEEEe
Confidence            3568999999999765433 699999743 221100 0001  1355654432 22333334468999854

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=93.28  E-value=0.048  Score=34.90  Aligned_cols=35  Identities=11%  Similarity=0.258  Sum_probs=28.4

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      .++.|..+.+.+|+++.|.|...+....   .+.|+|.
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~---~~~WYrq   38 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVTS---ALAWYRQ   38 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT---CEEEEEE
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCCc---cEEEEec
Confidence            4567899999999999999998765443   5889875

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.073  Score=33.24  Aligned_cols=36  Identities=6%  Similarity=0.043  Sum_probs=25.9

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      .+.+.|. ..|..|+++.|.|.++....    ...|.|++.
T Consensus         9 sLsa~P~-~~V~~G~~VTL~C~~~~~~~----~f~l~k~g~   44 (99)
T d1ucta1           9 FISAKSS-PVIPLDGSVKIQCQAIREAY----LTQLMIIKN   44 (99)
T ss_dssp             CEEESSC-SEEETTCCEEEEECCCTTCS----EEEEEEEET
T ss_pred             EEEecCC-CceeCCCeEEEEEcCCCCCc----EEEEEECCC
Confidence            3455664 56899999999999875432    578888754

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=93.10  E-value=0.038  Score=35.39  Aligned_cols=34  Identities=15%  Similarity=0.346  Sum_probs=27.3

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      ++.|..+.|.+|+++.|.|..+.....   .+.|+|.
T Consensus         5 tQsP~slsv~~G~svtl~C~~s~~~~~---~~~WYrQ   38 (106)
T d1i8ka_           5 TQSPASLSVATGEKVTIRCMTSTDIDD---DMNWYQQ   38 (106)
T ss_dssp             EEECSEEECCTTCCEEEEEEESSCCTT---CEEEEEE
T ss_pred             EeeCCEEEECCCCCEEEEEEeCCCCCc---cEEEEeC
Confidence            456888899999999999998765543   4899874

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=93.09  E-value=0.041  Score=35.26  Aligned_cols=35  Identities=11%  Similarity=0.254  Sum_probs=28.3

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      .++.|..+.+.+|+++.|.|..++....   .+.|+|.
T Consensus         4 ~tQsP~~ltv~~G~svtl~C~~s~~~~~---~~~WYrQ   38 (107)
T d1ospl1           4 MSQSSSSFSVSLGDRVTITCKASEDIYS---RLAWYQQ   38 (107)
T ss_dssp             EECCCSEEEECTTCCEEEEEEESSCCTT---CEEEEEE
T ss_pred             EEeeCCEEEECCCCCEEEEEecCCCccc---ccEEEEc
Confidence            3456888999999999999998776543   4899985

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=93.06  E-value=0.054  Score=34.63  Aligned_cols=35  Identities=11%  Similarity=0.334  Sum_probs=27.9

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      .++.|..+.+.+|+++.|.|..+.....   .+.|+|.
T Consensus         4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~---~~~WYrq   38 (107)
T d1d5il1           4 MTQSPSSMYASLGERVTITCKASQDINS---YLSWFQQ   38 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT---CEEEEEE
T ss_pred             EEeeCCEEEECCCCCEEEEEEcCCCCCC---ccceeEe
Confidence            3456888999999999999998766543   4889875

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.00  E-value=0.12  Score=32.11  Aligned_cols=36  Identities=11%  Similarity=-0.066  Sum_probs=25.8

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      .+.+.|. ..|..|+++.|+|.+....    ....|+|++.
T Consensus         6 sLsa~P~-~~V~~G~~VTL~C~~~~~~----~~f~L~k~g~   41 (95)
T d1olla1           6 FIWAEPH-FMVPKEKQVTICCQGNYGA----VEYQLHFEGS   41 (95)
T ss_dssp             EEEEESC-SEEETTCCEEEEEECCTTC----CEEEEEETTE
T ss_pred             EEEeeCC-CcccCCCcEEEEEecCCCc----cEEEEEECCC
Confidence            3556664 5688999999999986443    2577888753

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=92.88  E-value=0.059  Score=34.35  Aligned_cols=35  Identities=9%  Similarity=0.246  Sum_probs=28.2

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      .++.|..+.+.+|+++.|.|........   .+.|++.
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~---~~~WYrq   37 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKK---YIGWYQH   37 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT---CEEEEEE
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCC---CeEEEEC
Confidence            3566888999999999999998766544   4899875

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=92.84  E-value=0.044  Score=34.72  Aligned_cols=72  Identities=10%  Similarity=0.241  Sum_probs=39.3

Q ss_pred             EeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc--eEE--EeeeEEEecCeEEEeCCcEEEEeeeCCccCCcce
Q psy12724         23 IKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD--FVV--SQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVA   98 (167)
Q Consensus        23 ~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~--~v~--~g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p   98 (167)
                      ..|+.+.|.|.|.++-++.+ .|+|++++. .+..+...  ..-  .|.|..... ..+..++.-.+.|.+.+. +-+.|
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i-~v~W~~ng~-~~~~~~~~~~~~~~~dgtf~~~s~-l~v~~~~~~~ytC~V~H~-sl~~p   92 (99)
T d1uvqa1          17 TLGQPNTLICLVDNIFPPVV-NITWLSNGQ-SVTEGVSETSFLSKSDHSFFKISY-LTFLPSADEIYDCKVEHW-GLDQP   92 (99)
T ss_dssp             CTTSCEEEEEEEEEECSSCC-EEEEEETTE-EECTTEEECCCEECTTSCEEEEEE-EEECCCTTCCEEEEEECT-TSSSC
T ss_pred             cCCCcEEEEEEEEEEECCCC-EEEEEECCE-eccCCcEecceEECCCCCEEEEEE-EEEcCCCCCEEEEEEEeC-CCCCC
Confidence            35788999999999854434 599999843 34321000  000  244543221 233333444689999543 33444

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=0.078  Score=33.28  Aligned_cols=38  Identities=16%  Similarity=0.217  Sum_probs=26.6

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCc
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGG   53 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~   53 (167)
                      .+.+.|. ..|..|+++.|+|........   ...|+|++..
T Consensus         7 ~Lsa~P~-~~V~~G~~VTL~C~~~~~~~~---~f~L~k~g~~   44 (96)
T d1ucta2           7 FLSADRG-LVLMPGENISLTCSSAHIPFD---RFSLAKEGEL   44 (96)
T ss_dssp             EEEESSC-SEECTTCCCEEEEECSSSCCS---EEEEEETTCS
T ss_pred             EEEEeCC-CccCCCCeEEEEEeCCCCCce---EEEEEECCcc
Confidence            3455664 579999999999987533322   4778898653

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=92.82  E-value=0.04  Score=35.40  Aligned_cols=37  Identities=8%  Similarity=0.173  Sum_probs=27.7

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      +-++.+.++.|.+|+++.|.|........  ..+.|+|.
T Consensus         2 ~VtQ~~~~v~v~~G~~VtL~C~~~~~~~~--~~~~Wyrq   38 (114)
T d2ak4d1           2 KVTQAQTEISVVEKEDVTLDCVYETRDTT--YYLFWYKQ   38 (114)
T ss_dssp             EEECCCCEEEEETTCCEEECCEEECSCSS--CEEEEEEE
T ss_pred             cEEecCCeEEEeCCCCEEEEEEEcCCCcC--ccEEEEEc
Confidence            44567888999999999999986544332  25889874

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=92.76  E-value=0.07  Score=33.57  Aligned_cols=76  Identities=11%  Similarity=0.277  Sum_probs=38.8

Q ss_pred             eCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--ceEE--EeeeEEEecCeEEEeCCcEEEEeeeCCccCCcce-
Q psy12724         24 KGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--DFVV--SQSYTVNIMDEHVLKGNSAVLKCHIPSFVADYVA-   98 (167)
Q Consensus        24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--~~v~--~g~y~c~~~~~~v~~G~~a~l~C~~~~~~~~p~p-   98 (167)
                      .|+...|.|.|.++-++.+ .|+|++++. .+..+..  ...-  .|.|..... ..+..++...+.|.+.+. +-+.| 
T Consensus        17 ~~~~~tL~C~v~~F~P~~i-~v~W~~~g~-~~~~~~~~~~~~~~~dgtf~~~s~-l~~~~~~~~~ytC~V~H~-sl~~pi   92 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSI-EVRWFRNGQ-EEKTGVVSTGLIQNGDWTFQTLVM-LETVPRSGEVYTCQVEHP-SVTSPL   92 (98)
T ss_dssp             ----CEEEEEEEEEBSSCC-EEEEEETTE-ECCSSEEECCCEECSSSCEEEEEE-EECCCCTTCEEEEEEECT-TCSSCE
T ss_pred             cCCceEEEEEEeeeECCCc-EEEEEECCE-EcCCCCEECeEEeCCCcEEEEEEE-eeEcCCCCCEEEEEEEEC-CCCCCe
Confidence            3667789999999765533 699999743 2221100  0011  245553321 223345566899999532 22333 


Q ss_pred             eEEEE
Q psy12724         99 VESWI  103 (167)
Q Consensus        99 ~i~W~  103 (167)
                      ...|.
T Consensus        93 ~~~w~   97 (98)
T d1d5mb1          93 TVEWR   97 (98)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            33664

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.68  E-value=0.11  Score=32.42  Aligned_cols=29  Identities=7%  Similarity=0.496  Sum_probs=21.5

Q ss_pred             EeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         23 IKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        23 ~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      ..++.+.|.|.|.++-++.+ .|+|+|++.
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i-~v~W~~dg~   41 (94)
T d1de4a1          13 VTSSVTTLRCRALNYYPQNI-TMKWLKDKQ   41 (94)
T ss_dssp             ECSSCEEEEEEEEEEBSSCC-EEEEEETTE
T ss_pred             CCCCCEEEEEEEeeEECCCC-EEEEEECCE
Confidence            34678899999999644323 699999853

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=92.66  E-value=0.064  Score=34.42  Aligned_cols=34  Identities=12%  Similarity=0.304  Sum_probs=27.4

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      ++.|..+.+.+|+++.|.|..++....   .+.|++.
T Consensus         5 tQ~P~~l~~~~G~svtL~C~~s~~~~~---~~~WYrq   38 (108)
T d1jhll_           5 TQSPSYLVASPGETITINCRASKSISK---SLAWYQE   38 (108)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCTT---CEEEEEE
T ss_pred             EccCCeEEecCCCCEEEEEEccCCcCC---ceEEEEc
Confidence            456788889999999999998876543   4889875

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=92.63  E-value=0.035  Score=35.20  Aligned_cols=32  Identities=22%  Similarity=0.342  Sum_probs=25.2

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      +|..+.+.+|++|.|.|........   .+.|+|.
T Consensus         4 Qp~sl~~~~G~svtl~C~~~~~~~~---~~~WYrQ   35 (103)
T d8faba1           4 QPPSVSVSPGQTARITCSANALPNQ---YAYWYQQ   35 (103)
T ss_dssp             CCSEEEECTTSCEEEEEECTTGGGS---CCEEEEE
T ss_pred             CCCeEEECCCCCEEEEEEeCCCCCC---CEEEEEc
Confidence            3457899999999999998765543   5889875

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=92.61  E-value=0.067  Score=34.32  Aligned_cols=35  Identities=9%  Similarity=0.256  Sum_probs=27.9

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      .++.|..+.+.+|+++.|.|........   .+.|+|.
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~~---~i~WYrQ   38 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIYS---YLAWYQQ   38 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT---CEEEEEE
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcCc---ccceeec
Confidence            3566888999999999999998755433   4899984

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=92.50  E-value=0.074  Score=34.45  Aligned_cols=34  Identities=15%  Similarity=0.215  Sum_probs=27.3

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      .+.|....+.+|+++.|.|...+....   .+.|+|.
T Consensus         5 ~Q~P~~~~~~~G~~v~L~C~~~~~~~~---~~~WYrQ   38 (118)
T d2ij0c1           5 SQHPSMVIVKSGTSVKIECRSLDTNIH---TMFWYRQ   38 (118)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSSCCS---EEEEEEE
T ss_pred             EEcCCeEEEcCCCCEEEEEEEcCCccc---EEEEEEE
Confidence            456778889999999999998766443   6999985

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.035  Score=35.45  Aligned_cols=32  Identities=13%  Similarity=0.124  Sum_probs=24.2

Q ss_pred             EEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         21 FVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        21 ~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      .+.+|+.+.|.|.+.+.-....+.|+|++++.
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~   43 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDH   43 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTE
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCc
Confidence            37899999999999875332235799998854

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=92.40  E-value=0.07  Score=33.99  Aligned_cols=34  Identities=9%  Similarity=0.261  Sum_probs=27.4

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      ++.|..+.+.+|+++.|.|...+....   .+.|++.
T Consensus         4 tQ~P~sl~~~~G~svtL~C~~~~~~~~---~~~WYrq   37 (106)
T d1op3k1           4 TQSPSTLSASVGDTITITCRASQSIET---WLAWYQQ   37 (106)
T ss_dssp             EEECSEEEECTTCEEEEEEEESSCCTT---CEEEEEE
T ss_pred             eCcCCeEEECCCCCEEEEEEeCCCCCC---cEEEEec
Confidence            456888999999999999998765443   4899876

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=92.28  E-value=0.075  Score=33.51  Aligned_cols=65  Identities=20%  Similarity=0.318  Sum_probs=36.2

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeCCCceee---ecCC-ce-E--EEeeeEEEecCeEEEeCCcEEEEeeeCC
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQ---IDNQ-DF-V--VSQSYTVNIMDEHVLKGNSAVLKCHIPS   91 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~---~~~~-~~-v--~~g~y~c~~~~~~v~~G~~a~l~C~~~~   91 (167)
                      ...+.|.|.|.++-+..+ .|+|++++...-.   .+.. .. .  -.|.|+.... ..+..++-..+.|.+.+
T Consensus        14 ~~~vtL~C~~~gFyP~~I-~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~-l~v~~~~~~~ytC~V~H   85 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADL-EIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHID-VYVDGGLEHVYSCRVKG   85 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCE-EEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEE-EEECTTCGGGEEEEEEE
T ss_pred             CCcEEEEEEEEEEcCCCC-EEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEE-EEECCCCCCEEEEEEEe
Confidence            457899999999866545 5999998542111   1100 00 1  1355554322 23333444568899854

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=92.23  E-value=0.081  Score=33.66  Aligned_cols=34  Identities=15%  Similarity=0.356  Sum_probs=27.3

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      ++.|..+.+.+|+++.|.|........   .+.|+|.
T Consensus         5 tQ~p~~l~v~~G~~vtL~C~~~~~~~~---~~~WYrq   38 (107)
T d1j1pl_           5 TQSPATLSVTPGNSVSLSCRASQSIGN---NLHWYQQ   38 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTT---CEEEEEE
T ss_pred             ECcCCeEEECCCCCEEEEEEecCCCCc---ceEEEEe
Confidence            456788999999999999998765443   5899875

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.20  E-value=0.082  Score=33.73  Aligned_cols=35  Identities=9%  Similarity=0.239  Sum_probs=27.6

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      .++.|..+.+.+|+++.|.|...+....   .+.|+|.
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~~~~~---~~~WYrq   40 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQDIIK---YLNWYQQ   40 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTT---CEEEEEE
T ss_pred             EEeeCCEEEECCCCCEEEEEEecCCCCC---cceEeee
Confidence            3456788899999999999998765443   5889875

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.19  E-value=0.058  Score=34.33  Aligned_cols=32  Identities=19%  Similarity=0.332  Sum_probs=25.6

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      +|..+.+.+|+++.|.|..++....   .+.|+|.
T Consensus         6 Qp~s~~~~~G~svtL~C~~s~~~~~---~~~WYrq   37 (106)
T d1lk3l1           6 QPPALTVSPGEKLTISCKASESVTS---RMHWYQQ   37 (106)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCTT---CEEEEEE
T ss_pred             eCCeEEECCCCCEEEEEEeCCCCCc---cEEEEec
Confidence            3557899999999999999865543   5899875

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=92.04  E-value=0.095  Score=33.56  Aligned_cols=35  Identities=14%  Similarity=0.381  Sum_probs=28.2

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      -++.|..+.+.+|+++.|.|..+.....   .+.|+|.
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~---~~~Wyrq   37 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFS---NLRWYKQ   37 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCS---EEEEEEE
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCcc---CceEEEe
Confidence            3566888999999999999998765443   5899975

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=92.04  E-value=0.051  Score=35.02  Aligned_cols=35  Identities=23%  Similarity=0.311  Sum_probs=27.5

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      -++.|..+.+.+|+++.|.|........   .+.|+|.
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~---~i~WYrQ   37 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPP---YLFWYVQ   37 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCC---EEEEEEE
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCce---eEEEEEc
Confidence            3456778999999999999998765433   5899874

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.00  E-value=0.1  Score=32.33  Aligned_cols=64  Identities=14%  Similarity=0.208  Sum_probs=36.3

Q ss_pred             eCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE---EEeeeEEEecCeEEEeCCcEEEEeeeCC
Q psy12724         24 KGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV---VSQSYTVNIMDEHVLKGNSAVLKCHIPS   91 (167)
Q Consensus        24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v---~~g~y~c~~~~~~v~~G~~a~l~C~~~~   91 (167)
                      .++.+.|.|.|.|+-++.+ .|+|++++. .+.. .....   ..|.|..... ..+..++...+.|.+..
T Consensus        14 ~~~~~~L~C~~~gF~P~~i-~v~W~~ng~-~~~~-~~~~~~~~~dgty~~~S~-l~v~~~~~~~ytC~V~H   80 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPEL-KFRFLRNGL-ASGS-GNCSTGPNGDGSFHAWSL-LEVKRGDEHHYQCQVEH   80 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCC-EEEEEETTE-ECCC-CEEEEEECSSSCEEEEEE-EEEETTCGGGEEEEEEC
T ss_pred             CCCCEEEEEEEEeEECCCC-EEEEEECCE-eCCc-cCccceecCCCCEeEEEE-EEECCCCCCEEEEEEEe
Confidence            3568899999999754434 599999853 3321 11001   1355554332 23333444568899853

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=91.88  E-value=0.093  Score=33.62  Aligned_cols=35  Identities=17%  Similarity=0.396  Sum_probs=27.6

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      .-.+.|..+.+.+|+++.|.|...+..    ..+.|+|.
T Consensus         3 ~V~Q~P~~~~v~~G~~vtl~C~~~~~~----~~~~WYrQ   37 (113)
T d1h5ba_           3 QVEQSPSALSLHEGTDSALRCNFTTTM----RSVQWFRQ   37 (113)
T ss_dssp             SEEEECSEEEEETTCCEEEEEEESSCC----SEEEEEEE
T ss_pred             CeEECCCEEEEcCCCCEEEEEEEecCC----ccceEEEe
Confidence            345678889999999999999986543    25899884

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=91.83  E-value=0.11  Score=32.70  Aligned_cols=36  Identities=17%  Similarity=0.156  Sum_probs=26.6

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      .+.+.|. ..|..|.++.|+|...-...    ...|.|++.
T Consensus         8 sLsa~P~-~~V~~G~~VTL~C~~~~~~~----~f~L~k~g~   43 (99)
T d1nkra2           8 SLSAQPG-PTVLAGENVTLSCSSRSSYD----MYHLSREGE   43 (99)
T ss_dssp             EEEEESC-SEECTTCEEEEEEEESSCCS----EEEEEETTC
T ss_pred             EEEEeCC-CcccCCCeEEEEECCCCCcc----EEEEEECCC
Confidence            4556664 67899999999999765432    578888864

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=91.83  E-value=0.087  Score=33.42  Aligned_cols=34  Identities=21%  Similarity=0.331  Sum_probs=27.5

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      ++.|..+.+.+|+++.|.|........   .+.|+|.
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~~~~~---~~~WYrq   38 (107)
T d1kcvl1           5 TQSPKSMGMSVGEAVTLNCKASENVGT---YVSWYQQ   38 (107)
T ss_dssp             EESCSEEEEETTCCEEEEEEESSCCTT---CEEEEEE
T ss_pred             ECcCCEEeECCCCCEEEEEEecCCcCC---ceEEEEc
Confidence            356778889999999999998776544   4899975

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=91.71  E-value=0.071  Score=34.06  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=27.0

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      ++.|..+.+.+|+++.|.|..+.....   .+.|+|.
T Consensus         5 tQ~p~~l~~~~G~svtl~C~~s~~~~~---~~~WYrQ   38 (107)
T d1mexl1           5 TQSQKFMSTSLGNRVSVTCKASQNVGT---NVAWFQQ   38 (107)
T ss_dssp             ECCCSEEEECTTSCEEEEEEESSCCTT---CEEEEEE
T ss_pred             EcCCCeEEECCCCCEEEEEEeCCCCCC---ceEEEec
Confidence            456777889999999999998765543   4899975

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=91.63  E-value=0.048  Score=34.33  Aligned_cols=66  Identities=14%  Similarity=0.354  Sum_probs=34.3

Q ss_pred             EeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC--ceE--EEeeeEEEecCeEEEeCCcEEEEeeeCC
Q psy12724         23 IKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ--DFV--VSQSYTVNIMDEHVLKGNSAVLKCHIPS   91 (167)
Q Consensus        23 ~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~--~~v--~~g~y~c~~~~~~v~~G~~a~l~C~~~~   91 (167)
                      ..|+.+.|.|.|.++-++.+ .|+|++++. .+..+..  ...  -.|.|..... ..+..++...+.|.+.+
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i-~v~W~~ng~-~~~~~~~~~~~~~~~dgty~~~s~-l~v~~~~~~~ytC~V~H   83 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQI-KVRWFRNDQ-EETAGVVSTPLIRNGDWTFQILVM-LEMTPQRGDVYTCHVEH   83 (97)
T ss_dssp             -----CEEEEEEEEEBSSCC-EEEEEETTE-EECTTEEECCCEECSSSCEEEEEE-EECCSCTTCCEEEEEEC
T ss_pred             cCCCCEEEEEEEeeeECCCe-EEEEEECCE-EcCCCcEeceeecCCCceEEEEEE-eccCCCCCCEEEEEEEe
Confidence            34677889999999765434 599999853 3322100  011  1344553321 22334455679999853

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=91.57  E-value=0.091  Score=33.63  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=25.9

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      +|..+.+.+|+++.|.|...+.....-..+.|+|.
T Consensus         6 QP~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ   40 (112)
T d1lgva1           6 QPASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQ   40 (112)
T ss_dssp             CCSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEE
T ss_pred             CCCcEEECCCCCEEEEEEeCCCCCCCCCcceeeee
Confidence            47789999999999999987643211124899974

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.48  E-value=0.23  Score=30.76  Aligned_cols=36  Identities=17%  Similarity=0.206  Sum_probs=26.2

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCc
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGG   53 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~   53 (167)
                      +.+.|. ..|..|+++.|+|......    ....+.|++..
T Consensus         7 Lsa~P~-~~V~~G~~VTL~C~~~~~~----~~f~L~Keg~~   42 (93)
T d1olla2           7 LSVHPG-PEVISGEKVTFYCRLDTAT----SMFLLLKEGRS   42 (93)
T ss_dssp             EEEESC-SEEETTCEEEEEEECSSSC----SEEEEEEESSS
T ss_pred             EEEeCC-CcccCCCcEEEEECCCCCC----CEEEEEECCCc
Confidence            455664 6789999999999986433    25788887654

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=91.22  E-value=0.099  Score=33.40  Aligned_cols=35  Identities=11%  Similarity=0.218  Sum_probs=26.7

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      ++.+..+.+.+|+++.|.|........  ..+.|+|.
T Consensus         3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~~--~~i~WYrQ   37 (115)
T d1fo0a_           3 TQTQTSISVMEKTTVTMDCVYETQDSS--YFLFWYKQ   37 (115)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCSS--CEEEEEEE
T ss_pred             EccCCEEEEcCCCCEEEEEEEcCCCCC--CCCEEEEe
Confidence            456778999999999999987654433  25889874

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=91.20  E-value=0.13  Score=32.78  Aligned_cols=32  Identities=19%  Similarity=0.283  Sum_probs=25.3

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      +.|..+.+.+|+++.|.|...+..    ..+.|+|.
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~~----~~~~WYrQ   35 (111)
T d2esve1           4 QFPSHSVIEKGQTVTLRCDPISGH----DNLYWYRR   35 (111)
T ss_dssp             EECSEEEEETTCCEEEEEECCTTC----SEEEEEEE
T ss_pred             ECCCEEEECCCCCEEEEEEECCCC----ceEEEEEE
Confidence            457888999999999999865432    36899875

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=91.12  E-value=0.063  Score=34.19  Aligned_cols=35  Identities=14%  Similarity=0.300  Sum_probs=26.6

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      ++.|..+.+.+|+++.|.|........  ..+.|+|.
T Consensus         5 tQ~P~~~~v~~G~tv~l~C~~~~~~~~--~~~~WYrq   39 (108)
T d2fx7l1           5 TQSPGTQSLSPGERATLSCRASQSVGN--NKLAWYQQ   39 (108)
T ss_dssp             ECSSSEEEECTTCCEEEEEEESSCCGG--GCEEEEEE
T ss_pred             EeeCCeEEECCCCCEEEEEEeecCCCC--ccceeEec
Confidence            356788899999999999987654332  24889875

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=91.04  E-value=0.13  Score=32.77  Aligned_cols=32  Identities=19%  Similarity=0.268  Sum_probs=25.3

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      +.|..+.+.+|+++.|.|...+..    ..+.|+|.
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~~----~~~~WYrQ   35 (113)
T d2ntsp1           4 QTPRYLIKTRGQQVTLSCSPISGH----RSVSWYQQ   35 (113)
T ss_dssp             EECSEEEEETTCCEEEEEECSTTC----CEEEEEEE
T ss_pred             eCCCeEEECCCCCEEEEEEECCCC----CEEEEEEe
Confidence            457788899999999999975532    36899984

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=90.83  E-value=0.11  Score=33.08  Aligned_cols=34  Identities=24%  Similarity=0.308  Sum_probs=26.9

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      ++.|....+.+|+++.|.|........   .+.|+|.
T Consensus         5 ~Q~P~~~~~~~G~~vtL~C~~~~~~~~---~~~WYrQ   38 (112)
T d1fo0b_           5 EQNPRWRLVPRGQAVNLRCILKNSQYP---WMSWYQQ   38 (112)
T ss_dssp             EEECSEEECCTTCCEEEEEEESCTTCC---EEEEEEE
T ss_pred             EeCCCeEEECCCCCEEEEEEEecCCCC---cEEEEeE
Confidence            346778889999999999998765433   5899986

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=90.76  E-value=0.073  Score=34.24  Aligned_cols=32  Identities=28%  Similarity=0.340  Sum_probs=25.1

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      +|..+.+.+|+++.|.|.+......   .+.|+|.
T Consensus         6 Qp~sl~~~~G~svtl~C~~~~~~~~---~i~WYrQ   37 (109)
T d1w72l1           6 QPPSVSVAPGQTARITCGGNNIGSR---SVHWYQQ   37 (109)
T ss_dssp             CCSEEEECTTSCEEEEEECTTGGGS---CCEEEEE
T ss_pred             eCCeEEECCCCCEEEEEEcCCCCCc---ceeeeec
Confidence            3457889999999999998765443   4899875

>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.75  E-value=0.0089  Score=39.09  Aligned_cols=71  Identities=21%  Similarity=0.324  Sum_probs=41.5

Q ss_pred             EeCCcEEEEeeeCCccCCc-ceeEEEEeCCCeeeEEee----eecCCceEEEccCCeEEEeecCcCCCCcceEEEeeecC
Q psy12724         78 LKGNSAVLKCHIPSFVADY-VAVESWISDQGEELFVDM----TESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTKHRL  152 (167)
Q Consensus        78 ~~G~~a~l~C~~~~~~~~p-~p~i~W~k~~~~~l~~~~----~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~n~~  152 (167)
                      ..+.++.|.|.+.++.... .-.++|.+|+. .+....    ....++.|.+  ...|.|..-..... -.|+|.+.+..
T Consensus        27 ~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~-~~~~~~~~~~~~~~~gt~s~--~S~L~v~~~~W~~g-~~ytC~V~H~~  102 (116)
T d1igyb3          27 LITVTPKVTCVVVDISKDDPEVQFSWFVDNV-EVHTAQTQPREEQFNSTFRV--VSALPIMHQDWLNG-KEFKCRVNSAA  102 (116)
T ss_dssp             STTSCCEEEEEECCCCSSCCCCCBCBBSSSC-CBCCCSCCCCCCCCSSSCCC--CCCEECCHHHHHHT-CCCBCCBCCSS
T ss_pred             ccCCCcEEEEEEecEeCCCCEEEEEECcCCe-EcCCcEEcccEECCCCCEEE--EEEEEECHHHhCCC-CEEEEEEEeCC
Confidence            4588999999998763222 22467888873 332111    0112233322  23577665554444 68999999875

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=90.66  E-value=0.076  Score=33.61  Aligned_cols=33  Identities=18%  Similarity=0.406  Sum_probs=26.3

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      +.|..+.+.+|+++.|.|...+...   ..+.|+|.
T Consensus         4 Q~P~~~~~~~G~~vtl~C~~~~~~~---~~~~WYrq   36 (110)
T d1u3ha1           4 QSPQSLTVWEGETAILNCSYENSAF---DYFPWYQQ   36 (110)
T ss_dssp             CSCSSEEEETTSCEEEEEEECCTTE---EEEEEEEE
T ss_pred             ecCCEEEEcCCCCEEEEEEecCCCC---cEEEEEee
Confidence            4577888999999999999876543   36899875

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.59  E-value=0.12  Score=32.56  Aligned_cols=33  Identities=15%  Similarity=0.247  Sum_probs=25.8

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      ++.|..+.+.+|+++.|.|.......    .+.|++.
T Consensus         4 tQsP~~l~~~~G~~vtl~C~~s~~~~----~~~WYrQ   36 (104)
T d1yqvl1           4 TQSPAIMSASPGEKVTMTCSASSSVN----YMYWYQQ   36 (104)
T ss_dssp             EEESSEEEECTTCCEEEEEEESSCCS----CCEEEEE
T ss_pred             eCcCCeEEECCCCCEEEEEEeCCCCC----ccEEEEe
Confidence            45678889999999999998754432    4799976

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.58  E-value=0.2  Score=31.19  Aligned_cols=34  Identities=15%  Similarity=0.219  Sum_probs=23.3

Q ss_pred             EEEEEeCCcEEEEeecCCCCCC-cceeeEEeeCCC
Q psy12724         19 DVFVIKGNAAVFKCNLPSFVSD-HLDVVSWADTDG   52 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~~~~~~-~~~~i~W~k~~~   52 (167)
                      .+++..|++|.|.|.......+ ..-.+.|.+++.
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~   37 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKK   37 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecce
Confidence            4788999999999987643322 112578888754

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=90.57  E-value=0.094  Score=33.72  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=26.5

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      +.+..+.+.+|+++.|.|........   .+.|+|.
T Consensus         6 Q~~~~v~v~~G~~vtL~C~~~~~~~~---~i~Wyrq   38 (115)
T d1lp9e1           6 QTEGLVTLTEGLPVMLNCTYQSTYSP---FLFWYVQ   38 (115)
T ss_dssp             ECCSEEEEETTSCEEECEEEECSSSC---CEEEEEE
T ss_pred             cCCCeEEECCCCCEEEEEEEeCCCcC---CeeEEEe
Confidence            45667889999999999998766543   5899875

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=90.52  E-value=0.13  Score=33.01  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=26.2

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCC--CCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFV--SDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~--~~~~~~i~W~k~   50 (167)
                      ++.|..+.+.+|+++.|.|.+++..  ...-..+.|++.
T Consensus         5 TQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq   43 (112)
T d1mjul1           5 TQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQ   43 (112)
T ss_dssp             ECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             EecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEEC
Confidence            4557788999999999999876532  100135899875

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=90.49  E-value=0.16  Score=32.29  Aligned_cols=32  Identities=13%  Similarity=0.173  Sum_probs=25.2

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      +.|....+.+|+++.|.|...+..    ..+.|+|.
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~~----~~i~WYrQ   35 (112)
T d1kgce1           4 QSPRYKVAKRGQDVALRCDPISGH----VSLFWYQQ   35 (112)
T ss_dssp             EECSEEEEETTCCEEEEEECCTTC----CEEEEEEE
T ss_pred             ECCCeEEECCCCCEEEEEEECCCC----CEEEeeee
Confidence            457788899999999999865432    25899985

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=90.39  E-value=0.12  Score=32.81  Aligned_cols=34  Identities=9%  Similarity=0.259  Sum_probs=26.8

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      .++.|....+.+|+++.|.|...+..    ..+.|+|.
T Consensus         4 V~Q~P~~~~~~~G~~vtl~C~~s~~~----~~~~WYrQ   37 (110)
T d2aq2a1           4 VTQSPRNKVAVTGEKVTLSCQQTNNH----NNMYWYRQ   37 (110)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCC----SEEEEEEE
T ss_pred             EEEeCCeEEEcCCCCEEEEEEECCCc----CcEEEEEE
Confidence            34568889999999999999876532    35899985

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.35  E-value=0.28  Score=30.85  Aligned_cols=46  Identities=17%  Similarity=0.288  Sum_probs=29.3

Q ss_pred             EEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCceE---------EEeeeEEEec
Q psy12724         22 VIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDFV---------VSQSYTVNIM   73 (167)
Q Consensus        22 v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~v---------~~g~y~c~~~   73 (167)
                      -|.|.++.|.|...+..     .|.|.+++- .+......++         .+|.|.|...
T Consensus        11 SISGTtV~LTCP~~~~~-----~I~Wkkn~~-~i~g~~~~~L~L~~FSE~e~SGyY~C~~~   65 (100)
T d1jbja2          11 SISGTSVELTCPLDSDE-----NLKWEKNGQ-ELPQKHDKHLVLQDFSEVEDSGYYVCYTP   65 (100)
T ss_dssp             EEETTEEEEECSSCCCT-----TCEEEETTE-EECSCCCSEEEEESCCTTTSCEEEEEECS
T ss_pred             EEeCCEEEEECCCCCCC-----ceEEeeccc-cCCCCCCcEEEEccccccccCcceEEecC
Confidence            47799999999876532     499999853 3322112222         2788998643

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=90.16  E-value=0.08  Score=34.12  Aligned_cols=35  Identities=20%  Similarity=0.312  Sum_probs=26.6

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEee
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWAD   49 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k   49 (167)
                      -++.|..+.+.+|+++.|.|...+....  ..+.|+|
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~--~~i~Wyr   37 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSN--PDLFWYR   37 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSS--CCEEEEE
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccC--CcEEEEE
Confidence            3456788899999999999987554322  3589987

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=90.11  E-value=0.11  Score=33.35  Aligned_cols=34  Identities=15%  Similarity=0.231  Sum_probs=26.2

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      .+.+..+.|.+|+++.|.|........   .+.|+|.
T Consensus         4 ~Q~~~~v~v~~G~svtl~C~~~~~~~~---~~~Wyrq   37 (115)
T d1i9ea_           4 TQPDARVTVSEGASLQLRCKYSYSATP---YLFWYVQ   37 (115)
T ss_dssp             ECCCSEEEEETTSCEEECCEEECSSCC---EEEEEEE
T ss_pred             EcCCCeEEECCCCCEEEEEEEcCCCCC---CEEEEEE
Confidence            445667899999999999998765443   5789873

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=89.84  E-value=0.047  Score=34.90  Aligned_cols=34  Identities=9%  Similarity=0.305  Sum_probs=27.0

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      ++.|..+.+.+|++|.|.|..+.....   .+.|+|.
T Consensus         5 tQsP~s~~~~~G~~vtl~C~~s~~~~~---~~~WYrq   38 (107)
T d3cx5k1           5 TQTPVSLAASLGDRVTISCRASQDINN---FLNWYQQ   38 (107)
T ss_dssp             EEESTTCCBCSSSCCEEEEEESSCCTT---CEEEEEE
T ss_pred             ECcCCEEEECCCCCEEEEEEcCCCcCC---CeEEEEc
Confidence            456777889999999999998766543   4899875

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.71  E-value=0.085  Score=34.45  Aligned_cols=35  Identities=9%  Similarity=0.235  Sum_probs=27.6

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      .++.|..+.+.+|+++.|.|...+....   .+.|+|.
T Consensus         4 ltQ~P~sv~~~~G~svtl~C~~s~~~~~---~i~WYrQ   38 (119)
T d1f3rb2           4 LTQSPSLLSASVGDRVTLSCKGSQNINN---YLAWYQQ   38 (119)
T ss_dssp             SCEETSEECCCTTCCEEEEEECSSCCBT---CEEEEEE
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCcc---eeEEeee
Confidence            3456778889999999999998776544   4899875

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=89.68  E-value=0.25  Score=31.52  Aligned_cols=37  Identities=16%  Similarity=0.299  Sum_probs=26.3

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCC-cceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSD-HLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~-~~~~i~W~k~   50 (167)
                      ++.|..+.+.+|+++.|.|.++..... .-..+.|+|.
T Consensus         5 tQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ   42 (111)
T d2gsia1           5 TQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQ   42 (111)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEE
T ss_pred             EeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEE
Confidence            456888999999999999987543211 0124899875

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=89.54  E-value=0.073  Score=34.09  Aligned_cols=32  Identities=16%  Similarity=0.279  Sum_probs=25.5

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      +|..+.+.+|+++.|.|........   .+.|+|.
T Consensus         5 QP~s~~~~~G~svtl~C~~~~~~~~---~i~WYrQ   36 (108)
T d1nfde1           5 QPSSASVTVGETVKITCSGDQLPKN---FAYWFQQ   36 (108)
T ss_dssp             CCSEEEEETTSCCCEEEEETTGGGS---CCEEEEE
T ss_pred             CCCeeEECCCCCEEEEEECCCCCCc---cEEEEec
Confidence            3677889999999999998765543   4899874

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=89.42  E-value=0.19  Score=32.12  Aligned_cols=36  Identities=17%  Similarity=0.255  Sum_probs=26.7

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      ++.|..+.+.+|+++.|.|..++.... ...+.|+|.
T Consensus         4 ~Q~P~s~~~~~G~svtL~C~~s~~~~~-~~~~~Wyrq   39 (113)
T d1vesa_           4 DQTPRTATKETGESLTINCVLRDASFE-LKDTGWYRT   39 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEEESCSSC-CCEEEEEEE
T ss_pred             EeeCCEEEEcCCCCEEEEEEECCCccc-CCccceeee
Confidence            346888999999999999988654322 135889874

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=89.29  E-value=0.17  Score=32.18  Aligned_cols=34  Identities=24%  Similarity=0.241  Sum_probs=25.0

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      +|..+.|.+|+++.|.|..++.... -..+.|++.
T Consensus         6 Qp~s~~v~~G~svtl~C~~s~~~~~-~~~~~WYrq   39 (111)
T d1rzfl1           6 QPPSVSAAPGQKVTISCSGSSSNIG-NNDVSWYQQ   39 (111)
T ss_dssp             CCSEEEECTTSCEEEEEECCCCCCC-TSCEEEEEE
T ss_pred             eCcceEeCCCCCEEEEEEECCcCCc-CCcccceee
Confidence            3557999999999999998654321 124899875

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=89.26  E-value=0.24  Score=31.70  Aligned_cols=36  Identities=17%  Similarity=0.260  Sum_probs=26.7

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      .+.|..+.+.+|+++.|.|..++.... ...+.|+|.
T Consensus         3 ~Q~P~s~t~~~G~svtl~C~~s~~s~~-~~~i~WYrq   38 (112)
T d1sq2n_           3 DQTPRSVTKETGESLTINCVLRDASYA-LGSTCWYRK   38 (112)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSCSSC-CCCEEEEEE
T ss_pred             EecCCEEEEcCCCCEEEEEEECCCccc-CCceEEEEe
Confidence            456788889999999999987653321 135899975

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.25  E-value=0.26  Score=30.30  Aligned_cols=42  Identities=19%  Similarity=0.462  Sum_probs=26.3

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCce-E------EEeeeEEE
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQDF-V------VSQSYTVN   71 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~~-v------~~g~y~c~   71 (167)
                      |+.+.|.|.-+-.     ..|.|.|+....+...+... +      -.|.|+|.
T Consensus        21 ~~~V~L~C~t~eE-----~~I~W~kd~~se~~~~GntltV~VkE~~~aGnYTCh   69 (87)
T d3d85d1          21 GEMVVLTCDTPEE-----DGITWTLDQSSEVLGSGKTLTIQVKEFGDAGQYTCH   69 (87)
T ss_dssp             CEEEEEECSSSCC-----SSCEEEETTCCCCCEESSEEEEEECSGGGCEEEEEE
T ss_pred             ccEEEEecCCCcc-----cccEEeeCCccccccCCCEEEEEEEeccCCcceeEe
Confidence            5689999965432     24999998654343333332 2      15899997

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.23  E-value=0.18  Score=32.25  Aligned_cols=34  Identities=9%  Similarity=0.234  Sum_probs=23.8

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      +..+.|.+|+++.|.|..+......-..+.|+|.
T Consensus         7 ~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ   40 (110)
T d1oaql_           7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQE   40 (110)
T ss_dssp             CSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEE
T ss_pred             CCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEe
Confidence            4568899999999999987533110123889874

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.93  E-value=0.086  Score=33.52  Aligned_cols=36  Identities=17%  Similarity=0.314  Sum_probs=25.6

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      ..|+++.+.+|+++.|.|............+.|.|.
T Consensus         4 t~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~   39 (116)
T d1xeda_           4 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQ   39 (116)
T ss_dssp             BCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC
T ss_pred             cCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEc
Confidence            367889999999999999875432111124789875

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.79  E-value=1.5  Score=26.36  Aligned_cols=50  Identities=14%  Similarity=0.209  Sum_probs=33.4

Q ss_pred             EEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecC--Cce---E-----EEeeeEEEe
Q psy12724         21 FVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDN--QDF---V-----VSQSYTVNI   72 (167)
Q Consensus        21 ~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~--~~~---v-----~~g~y~c~~   72 (167)
                      ....|..+.|+|...+++.+ +.--.|.|+ |+.+..+.  +..   -     .+|.|.|..
T Consensus         8 v~~~~sk~~LtCnLt~s~~~-i~ghrW~K~-gkvl~ed~~~~~~tey~V~~~D~SGeY~CVF   67 (80)
T d3b5ha2           8 VEDLGSKILLTCSLNDSATE-VTGHRWLKG-GVVLKEDALPGQKTEFKVDSDDQWGEYSCVF   67 (80)
T ss_dssp             EEEETTEEEEEEEEESCSSC-CCEEEEESS-SEEEECTTCCCSEEEEEECGGGCCEEEEEEE
T ss_pred             cccCCCCEEEEEECCCCCCc-eeeeEEeeC-CEEccccCCCCCceEEEEecCCCCceEEEEE
Confidence            34678999999999877665 566899998 44454321  111   1     278888874

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=88.79  E-value=0.2  Score=32.32  Aligned_cols=34  Identities=12%  Similarity=0.093  Sum_probs=24.5

Q ss_pred             EeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         17 VYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        17 ~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      +..+.|.+|+++.|.|.+.+.... -..+.|++..
T Consensus         7 ~ps~~v~~G~svtL~C~~s~~~~~-~~~~~WYrQ~   40 (114)
T d2rhea_           7 PPSASGTPGQRVTISCTGSATDIG-SNSVIWYQQV   40 (114)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTT-TSCEEEEECC
T ss_pred             CCcEEeCCCCCEEEEEEECCcccc-CCcccceeee
Confidence            346889999999999998755311 0248899763

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.48  E-value=0.29  Score=30.62  Aligned_cols=34  Identities=15%  Similarity=0.346  Sum_probs=24.8

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      +++.+.+.+|+++.|.|..++.... -..+.|.|.
T Consensus         2 ~~~~v~~~~G~svtl~C~~~~~~~~-~~~~~W~r~   35 (108)
T d1hkfa_           2 KAQVLQSVAGQTLTVRCQYPPTGSL-YEKKGWCKE   35 (108)
T ss_dssp             CCEEEEECTTCCEEEEEECCCCTTC-CCEEEEEEE
T ss_pred             CCEEEEEcCCCCEEEEEEECCCCCC-CCEEEEEEe
Confidence            3566889999999999987654432 135789874

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=88.47  E-value=0.22  Score=31.80  Aligned_cols=34  Identities=21%  Similarity=0.229  Sum_probs=26.5

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      ++.|....+.+|+++.|.|......    ..+.|+|..
T Consensus         5 tQ~P~~~~~~~G~~v~l~C~~~~~~----~~~~WYrQ~   38 (113)
T d1nfdb1           5 VQSPRHIIKEKGGRSVLTCIPISGH----SNVVWYQQT   38 (113)
T ss_dssp             EEECSEEEEETTCCCEEEEECCTTC----CEEEEEEBC
T ss_pred             EEcCCEEEEeCCCCEEEEEEeCCCC----CEEEEEEEC
Confidence            4567888999999999999875432    368999863

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=88.35  E-value=0.15  Score=32.43  Aligned_cols=34  Identities=12%  Similarity=0.128  Sum_probs=26.5

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      ++.|..+.+.+|+++.|.|........   .+.|+|.
T Consensus         4 tQ~p~~~~~~~G~~vtl~C~~~~~~~~---~~~WYrQ   37 (110)
T d1ac6a_           4 TQTEGQVALSEEDFLTIHCNYSASGYP---ALFWYVQ   37 (110)
T ss_dssp             EECCSEEEEETTEEEEECEEEECSSCC---EEEEEEE
T ss_pred             EeCCCeEEECCCCCEEEEEEecCCCCc---ceEEEEc
Confidence            345777899999999999987655433   5899885

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=88.22  E-value=0.22  Score=31.72  Aligned_cols=37  Identities=16%  Similarity=0.246  Sum_probs=26.4

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCC-CcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVS-DHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~-~~~~~i~W~k~   50 (167)
                      ++.|..+.+.+|+++.|.|....... .....+.|+|.
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq   42 (111)
T d1j05a_           5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQ   42 (111)
T ss_dssp             EEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEE
T ss_pred             EccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEc
Confidence            45688888999999999998754321 11234899875

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.22  E-value=0.037  Score=34.98  Aligned_cols=32  Identities=19%  Similarity=0.516  Sum_probs=23.1

Q ss_pred             EEeCCcEEEEeecCCCC-CCcceeeEEeeCCCce
Q psy12724         22 VIKGNAAVFKCNLPSFV-SDHLDVVSWADTDGGQ   54 (167)
Q Consensus        22 v~~G~~~~l~C~a~~~~-~~~~~~i~W~k~~~~~   54 (167)
                      +..++++.|.|.|.++. +.. -.|+|.++++..
T Consensus        15 ~~~~~~~tL~C~v~~f~~p~~-i~v~W~~~~~~~   47 (101)
T d1ow0a1          15 LLLGSEANLTCTLTGLRDASG-VTFTWTPSSGKS   47 (101)
T ss_dssp             HHHCSSCCCEEEETTCCSCCC-CCCCBSSCSSCC
T ss_pred             HccCCCeEEEEEEeCCCCCcc-eEEEEEECCcee
Confidence            34578999999999862 332 359999887643

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=88.08  E-value=0.3  Score=31.11  Aligned_cols=37  Identities=11%  Similarity=0.286  Sum_probs=26.7

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCC---CCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFV---SDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~---~~~~~~i~W~k~   50 (167)
                      ++.|..+.+.+|+++.|.|.+++..   ...-..+.|+|.
T Consensus         5 tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq   44 (113)
T d1q9ra1           5 SQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQ   44 (113)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEE
T ss_pred             EccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEec
Confidence            4568889999999999999876532   111134899985

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=88.01  E-value=0.28  Score=31.08  Aligned_cols=32  Identities=13%  Similarity=0.215  Sum_probs=24.9

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      +.|....+.+|+++.|.|......    ..+.|+|.
T Consensus         4 Q~P~~~~~~~G~svtl~C~~s~~~----~~~~WYrQ   35 (112)
T d2bnub1           4 QTPKFQVLKTGQSMTLQCAQDMNH----EYMSWYRQ   35 (112)
T ss_dssp             EECSEEEEETTCCEEEEEEESSCC----SEEEEEEE
T ss_pred             ECCCeEEECCCCCEEEEEEEECCc----cceEeccc
Confidence            457778899999999999875432    35999975

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=87.99  E-value=0.28  Score=31.73  Aligned_cols=35  Identities=17%  Similarity=0.316  Sum_probs=26.6

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCC-CCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFV-SDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~-~~~~~~i~W~k~   50 (167)
                      ..++..+.|.+|+++.|.|..++.. ..  ..+.|+|.
T Consensus         5 v~~~~sv~v~~G~~vtL~C~~s~~~~~~--~~~~WyrQ   40 (120)
T d1hxma1           5 VPEHQTVPVSIGVPATLRCSMKGEAIGN--YYINWYRK   40 (120)
T ss_dssp             EESCSEEEEETTCCEEEEEEECSSCGGG--SEEEEEEE
T ss_pred             eccCCCEEECCCCCEEEEEEEeccCccC--CcCeEEEc
Confidence            4566778899999999999987653 22  25899874

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=87.84  E-value=0.4  Score=29.76  Aligned_cols=37  Identities=8%  Similarity=-0.018  Sum_probs=26.8

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCc
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGG   53 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~   53 (167)
                      .+.+.| +..|..|.+++|+|..+-...    ...+.|++..
T Consensus         4 sLsa~P-~~~V~~G~~VTl~C~~~~~~~----~f~L~keg~~   40 (96)
T d1nkra1           4 SLLAHP-GPLVKSEETVILQCWSDVMFE----HFLLHREGMF   40 (96)
T ss_dssp             EEEEES-CSEEETTCCEEEEEEESSCCS----EEEEEEESSS
T ss_pred             EEEeeC-CCccCCCCcEEEEECCCCCCC----EEEEEECCCc
Confidence            345555 588999999999999764432    4777887653

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=87.74  E-value=0.24  Score=32.27  Aligned_cols=36  Identities=14%  Similarity=0.207  Sum_probs=25.3

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      ++.+..+.+.+|+++.|.|.+++..-.. ..+.|+|.
T Consensus         5 ~Qp~~s~t~~~g~t~~LsC~~sg~~~s~-~~~~WYrQ   40 (123)
T d1hxmb1           5 EQPQISSTKTLSKTARLECVVSGITISA-TSVYWYRE   40 (123)
T ss_dssp             ECCCSEEEEETTCCEEEEEEEESSCTTT-SCEEEEEE
T ss_pred             ECCCCeEEeCCCCCEEEEEEEcCCCccc-CeEEEEEE
Confidence            3344567788999999999987653111 24899985

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=87.68  E-value=0.17  Score=32.17  Aligned_cols=34  Identities=24%  Similarity=0.277  Sum_probs=25.2

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      +|..+.+.+|+++.|.|..++..-. -..+.|+|.
T Consensus         6 QP~s~sv~~G~svtL~C~~s~~~~~-~~~i~WyrQ   39 (111)
T d1cd0a_           6 QPHSVSESPGKTVTISCTRSSGNID-SNYVQWYQQ   39 (111)
T ss_dssp             CCSEEEECTTSCEEEEEEESSSCGG-GSCCEEEEE
T ss_pred             cCCeeEECCCCCEEEEEEECCCCcc-CceEEEeee
Confidence            4677899999999999998654311 124899875

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.53  E-value=0.69  Score=27.48  Aligned_cols=47  Identities=11%  Similarity=0.320  Sum_probs=26.9

Q ss_pred             CCcEEEEeeeCCccCCcceeEEEEeCCCeeeEEeeeecCCceEEEccCCeEEEeecCcCCCCcceEEEee
Q psy12724         80 GNSAVLKCHIPSFVADYVAVESWISDQGEELFVDMTESTDGKYLVLPSGELHIRDVGPEDGYKSYQCRTK  149 (167)
Q Consensus        80 G~~a~l~C~~~~~~~~p~p~i~W~k~~~~~l~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~G~Y~C~a~  149 (167)
                      -..|.|.|..         .|+|++++ ..+..     .       .+-.|-+-+.-..- -|.|.|.+.
T Consensus         9 e~~V~L~Cn~---------si~W~k~~-~~~~~-----~-------~~k~lnLG~~~~DP-RG~Y~C~~~   55 (74)
T d1xiwb_           9 EDRVFVNCNT---------SITWVEGT-VGTLL-----S-------DITRLDLGKRILDP-RGIYRCNGT   55 (74)
T ss_dssp             TTEEEEECSS---------CEEEEEEC-CCEEE-----G-------GGTEEEEEEGGGCC-EEEEEEC--
T ss_pred             CCeEEEEccC---------eeEEecCC-ccccc-----C-------CccEeecCCcccCC-CcceEeCCc
Confidence            3478999962         38999986 33221     1       12234444444444 499999876

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=87.23  E-value=0.37  Score=30.75  Aligned_cols=37  Identities=14%  Similarity=0.226  Sum_probs=26.2

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCC--CcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVS--DHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~--~~~~~i~W~k~   50 (167)
                      ++.|..+.+.+|++|.|.|.++....  ..-..+.|++.
T Consensus         5 TQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ   43 (112)
T d1ncwl1           5 TQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQ   43 (112)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             eCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEc
Confidence            45688899999999999998754321  11124889875

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.90  E-value=0.37  Score=29.97  Aligned_cols=37  Identities=14%  Similarity=0.110  Sum_probs=24.7

Q ss_pred             eceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         11 QYYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        11 ~~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +.+.++|. ..|..|++++|+|..+-...    ....+|++.
T Consensus         5 PsLsa~P~-~~v~~G~~VTL~C~~~~~~~----~f~L~k~g~   41 (98)
T d1ugna2           5 PTLSAQPS-PVVNSGGNVTLQCDSQVAFD----GFILCKEGE   41 (98)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEECSSCCS----EEEEEEC--
T ss_pred             CEEEeeCC-CccCCCCcEEEEeCCCCCCC----EEEEEECCC
Confidence            34566774 67999999999999764332    355667644

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.80  E-value=0.24  Score=31.15  Aligned_cols=36  Identities=14%  Similarity=0.177  Sum_probs=25.2

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCC-CCcceeeEEeeC
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFV-SDHLDVVSWADT   50 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~-~~~~~~i~W~k~   50 (167)
                      ..|.++.+..|+++.|.|...... ......+.|.+.
T Consensus         4 ~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~   40 (119)
T d1neua_           4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQ   40 (119)
T ss_dssp             ECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEE
T ss_pred             cCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEe
Confidence            356788999999999999864321 111236899874

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.41  E-value=0.69  Score=28.49  Aligned_cols=35  Identities=9%  Similarity=0.053  Sum_probs=23.9

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      +.++|. ..|..|+++.|+|..+-...    ....+|++.
T Consensus         7 Lsa~Ps-~~V~~G~~VTL~C~~~~~~~----~f~L~keg~   41 (96)
T d1ugna1           7 LWAEPG-SVITQGSPVTLRCQGGQETQ----EYRLYREKK   41 (96)
T ss_dssp             EEEESC-SEEETTCCEEEEEECCTTCC----CEEEEESSS
T ss_pred             EEeECC-CccCCCCcEEEEEeCCCCCC----EEEEEECCC
Confidence            445555 56889999999999753322    356667653

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=85.15  E-value=0.26  Score=31.33  Aligned_cols=33  Identities=18%  Similarity=0.325  Sum_probs=25.3

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      +.|..+.+.+|+++.|.|......    ..+.|+|..
T Consensus         4 QsP~~~~~~~G~svtl~C~~s~~~----~~~~WYrQ~   36 (114)
T d1ogae1           4 QSPKYLFRKEGQNVTLSCEQNLNH----DAMYWYRQD   36 (114)
T ss_dssp             CSCSEEEEETTCCEEECCEECSCC----SEEEEEEEC
T ss_pred             EcCCeEEEcCCCCEEEEEEEecCC----CcEEEEeec
Confidence            346778899999999999975332    368999753

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.83  E-value=0.95  Score=28.07  Aligned_cols=42  Identities=14%  Similarity=0.078  Sum_probs=28.3

Q ss_pred             ceeeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCCCceeee
Q psy12724         12 YYEAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQI   57 (167)
Q Consensus        12 ~~~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~   57 (167)
                      .|...++-+.+.+|+.+++-|.+..-.   +.+.-|..+++ .+.+
T Consensus         7 ~~~~~p~~V~v~eg~~~vIPC~vT~P~---~~VtL~~~~~~-~~~p   48 (95)
T d1fltx_           7 MYSEIPEIIHMTEGRELVIPCRVTSPN---ITVTLKKFPLD-TLIP   48 (95)
T ss_dssp             CCCSSCEEEEECTTSCEEECCCBSCTT---SCCEEEETTTE-EECC
T ss_pred             CCCCCCCEEEEeCCCCEEEEccCCCCC---ceeEEEeccCC-ccCC
Confidence            355567778899999999999997533   23455655544 3434

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=84.32  E-value=0.28  Score=31.09  Aligned_cols=32  Identities=13%  Similarity=0.224  Sum_probs=25.1

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      +.|....+.+|+++.|.|......    ..+.|+|.
T Consensus         3 QsP~~~~~~~G~svtL~C~~~~~~----~~~~WYrQ   34 (112)
T d2cdeb1           3 QTPRYLVIGTGKKITLECSQTMGH----DKMYWYQQ   34 (112)
T ss_dssp             EECSEEEEETTCCBCCEEEETTCC----SEEEEEEE
T ss_pred             ECCCEEEECCCCCEEEEEEEeCCc----ccEEEEEE
Confidence            457778899999999999975432    36899985

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=84.04  E-value=0.6  Score=29.65  Aligned_cols=38  Identities=13%  Similarity=0.165  Sum_probs=26.8

Q ss_pred             eeeEEeEEEEEeCCcEEEEeecCCCCCC--cceeeEEeeC
Q psy12724         13 YEAQVYDVFVIKGNAAVFKCNLPSFVSD--HLDVVSWADT   50 (167)
Q Consensus        13 ~~~~~~~~~v~~G~~~~l~C~a~~~~~~--~~~~i~W~k~   50 (167)
                      .++.|....+.+|+++.|.|..++....  .-..+.|++.
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ   44 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQ   44 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEE
T ss_pred             EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEec
Confidence            3556888999999999999997543210  0125899875

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.60  E-value=0.51  Score=29.84  Aligned_cols=36  Identities=14%  Similarity=0.152  Sum_probs=23.8

Q ss_pred             EEeEEEEEeCCcEEEEeecCCC----CCCcceeeEEeeCC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSF----VSDHLDVVSWADTD   51 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~----~~~~~~~i~W~k~~   51 (167)
                      .++.++|.+|+++.|.|.....    .......+.|.+..
T Consensus         7 ~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~   46 (121)
T d2g5ra1           7 MQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAG   46 (121)
T ss_dssp             CCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC
T ss_pred             eCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEec
Confidence            3557889999999999986311    11112357898763

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=82.80  E-value=0.49  Score=30.52  Aligned_cols=35  Identities=9%  Similarity=0.094  Sum_probs=24.5

Q ss_pred             eEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         15 AQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        15 ~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      +.+..+.+.+|+++.|.|.+.+..-. -..+.|+|.
T Consensus         6 Q~~~sv~~~~G~svtL~C~~~~~~~~-~~~i~WYrQ   40 (120)
T d1ypzf1           6 QPEISISRPRDETAQISCKVFIESFR-SVTIHWYRQ   40 (120)
T ss_dssp             CSCSEEEEETTSCEEEEEEECCGGGG-GCCEEEEEE
T ss_pred             cCCCEEEecCCCcEEEEEEEeccccc-CCcccEEEe
Confidence            44556778899999999998654311 124899875

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.76  E-value=0.75  Score=28.37  Aligned_cols=36  Identities=19%  Similarity=0.344  Sum_probs=23.4

Q ss_pred             EEEEEeCCcEEEEeecCCCCCCcce--eeEEeeCCCce
Q psy12724         19 DVFVIKGNAAVFKCNLPSFVSDHLD--VVSWADTDGGQ   54 (167)
Q Consensus        19 ~~~v~~G~~~~l~C~a~~~~~~~~~--~i~W~k~~~~~   54 (167)
                      .+.+..|++|.|.|...........  ...|.+++...
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~   40 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLV   40 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCE
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccce
Confidence            4778999999999998654432222  24455655543

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.68  E-value=0.34  Score=30.46  Aligned_cols=28  Identities=14%  Similarity=0.399  Sum_probs=21.0

Q ss_pred             eCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         24 KGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      .|+.+.|.|.|.++-++.+ .|+|++++.
T Consensus        19 ~~~~~tl~C~~~~f~P~~i-~v~W~~~g~   46 (108)
T d1ow0a2          19 LNELVTLTCLARGFSPKDV-LVRWLQGSQ   46 (108)
T ss_dssp             SSSEEEEEEEEEEESSSCC-EEEEEETTE
T ss_pred             cCCceEEEEEEEEeECCCE-EEEEEECCe
Confidence            4788999999998643322 699998743

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.16  E-value=0.46  Score=30.19  Aligned_cols=36  Identities=17%  Similarity=0.091  Sum_probs=24.9

Q ss_pred             EEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      +|..+.+.+|+++.|.|...+.....--.+.|+|..
T Consensus         5 QP~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~   40 (117)
T d1dqta_           5 QPSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQT   40 (117)
T ss_dssp             CCSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEEC
T ss_pred             CCCEEEEcCCCcEEEEEECccCCcccceeEEEEEeC
Confidence            466788899999999999754332211247899853

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.99  E-value=0.55  Score=29.27  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=23.3

Q ss_pred             eEEEEEeCCcEEEEeecCCCCC-CcceeeEEeeC
Q psy12724         18 YDVFVIKGNAAVFKCNLPSFVS-DHLDVVSWADT   50 (167)
Q Consensus        18 ~~~~v~~G~~~~l~C~a~~~~~-~~~~~i~W~k~   50 (167)
                      ..+.+.+|+++.|.|.....+. .....+.|.+.
T Consensus        12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~   45 (124)
T d1eaja_          12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLIS   45 (124)
T ss_dssp             EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEE
T ss_pred             ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEe
Confidence            4477899999999999754332 11246899874

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=81.83  E-value=0.5  Score=29.80  Aligned_cols=33  Identities=9%  Similarity=0.131  Sum_probs=24.8

Q ss_pred             eeEEeEEEEEeCCcEEEEeecCCCCCCcceeeEEeeC
Q psy12724         14 EAQVYDVFVIKGNAAVFKCNLPSFVSDHLDVVSWADT   50 (167)
Q Consensus        14 ~~~~~~~~v~~G~~~~l~C~a~~~~~~~~~~i~W~k~   50 (167)
                      ++.|....+.+|+++.|.|......    ..+.|+|.
T Consensus         4 ~QsP~~~~~~~G~~v~l~C~~~~~~----~~~~WYrQ   36 (113)
T d1j8he1           4 TQSSRYLVKRTGEKVFLECVQDMDH----ENMFWYRQ   36 (113)
T ss_dssp             EESCSEEEEETTCCEEECEEESSCC----SEEEEEEE
T ss_pred             EccCCEEEECCCCCEEEEEEEcCCc----cEEEeEEe
Confidence            3457778899999999999864322    35889875

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.57  E-value=0.77  Score=28.05  Aligned_cols=44  Identities=9%  Similarity=0.280  Sum_probs=26.5

Q ss_pred             eCCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCCc-e--E------EEeeeEEEec
Q psy12724         24 KGNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQD-F--V------VSQSYTVNIM   73 (167)
Q Consensus        24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~~-~--v------~~g~y~c~~~   73 (167)
                      +-.++.|.|....      ..|.|++++......+.++ .  +      -+|.|.|...
T Consensus        21 ~dGsV~L~Cn~~~------k~i~W~kdg~~i~~~~~~~ktlnLG~~~~DPRGiY~C~g~   73 (86)
T d1jbja1          21 GDGSVLLTCGLTD------KTIKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGA   73 (86)
T ss_dssp             SSCEEEEECSSSC------SCEEEEETTEECCCSSCCSSCCEEEETTSCCEEEEEEEES
T ss_pred             cCCeEEEEeCCCC------cEEEEecCCceecccccccceeecCCcccCCCcceEcCCC
Confidence            3468999996542      2599999954322222221 1  1      1799999654

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.38  E-value=0.086  Score=33.50  Aligned_cols=28  Identities=25%  Similarity=0.449  Sum_probs=21.2

Q ss_pred             eCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         24 KGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      .++.+.|.|.|.++-++.+ .|+|++++.
T Consensus        19 ~~~~~~L~Clv~~f~P~~i-~v~W~~ng~   46 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREA-KVQWKVDNA   46 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCC-EEEEEETTE
T ss_pred             cCCceEEEEEEEEeeCCCC-EEEEEECCE
Confidence            3678999999999754433 599999854

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.16  E-value=2  Score=26.40  Aligned_cols=28  Identities=14%  Similarity=0.447  Sum_probs=20.0

Q ss_pred             eCCcEEEEeecCCC-CCCcceeeEEeeCCC
Q psy12724         24 KGNAAVFKCNLPSF-VSDHLDVVSWADTDG   52 (167)
Q Consensus        24 ~G~~~~l~C~a~~~-~~~~~~~i~W~k~~~   52 (167)
                      .++.+.|.|.|.++ |.+. -.+.|.+++.
T Consensus        18 ~~~~v~L~Clv~gF~P~~~-i~v~W~~~~~   46 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGT-MNVTWGKSGK   46 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCC-EEEEESCCCS
T ss_pred             CCCcEEEEEEEEcccCCCc-EEEEEccCCC
Confidence            36889999999995 5542 3567877643

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.36  E-value=1.4  Score=27.07  Aligned_cols=26  Identities=19%  Similarity=0.497  Sum_probs=18.7

Q ss_pred             EEeCCcEEEEeecCCCCCCcceeeEEeeCCC
Q psy12724         22 VIKGNAAVFKCNLPSFVSDHLDVVSWADTDG   52 (167)
Q Consensus        22 v~~G~~~~l~C~a~~~~~~~~~~i~W~k~~~   52 (167)
                      -|.|.+++|.|.-.  .++   .|.|.+.+.
T Consensus         7 sISGTtV~LTCP~~--~~~---~i~W~~n~~   32 (91)
T d1xiwa_           7 SISGTTVILTCPQY--PGS---EILWQHNDK   32 (91)
T ss_dssp             EEETTEEEEECSSC--TTS---CEEEEETTE
T ss_pred             EEeCCEEEEECCCC--CCC---ceeeeeccc
Confidence            36799999999643  222   599998753

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.34  E-value=0.47  Score=29.48  Aligned_cols=27  Identities=22%  Similarity=0.571  Sum_probs=21.1

Q ss_pred             eCCcEEEEeecCCCCCCcceeeEEeeCC
Q psy12724         24 KGNAAVFKCNLPSFVSDHLDVVSWADTD   51 (167)
Q Consensus        24 ~G~~~~l~C~a~~~~~~~~~~i~W~k~~   51 (167)
                      .++.+.|.|.|.++-++.+ .|+|++++
T Consensus        19 ~~~~~tL~C~v~~f~P~~i-~v~W~~~g   45 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAV-TVAWKADS   45 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCC-EEEEEETT
T ss_pred             cCCcEEEEEEEEeeCCCCe-EEEEEECC
Confidence            4788999999999655433 59999985

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.10  E-value=0.86  Score=27.87  Aligned_cols=20  Identities=15%  Similarity=0.318  Sum_probs=17.4

Q ss_pred             EEeEEEEEeCCcEEEEeecC
Q psy12724         16 QVYDVFVIKGNAAVFKCNLP   35 (167)
Q Consensus        16 ~~~~~~v~~G~~~~l~C~a~   35 (167)
                      .|+++.+.+|+++.|.|...
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~   25 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFS   25 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEE
T ss_pred             CCCEEEEecCCcEEEEEEEe
Confidence            37789999999999999863

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.10  E-value=1.4  Score=26.59  Aligned_cols=42  Identities=7%  Similarity=0.195  Sum_probs=24.8

Q ss_pred             CCcEEEEeecCCCCCCcceeeEEeeCCCceeeecCC-ce--E------EEeeeEEEe
Q psy12724         25 GNAAVFKCNLPSFVSDHLDVVSWADTDGGQYQIDNQ-DF--V------VSQSYTVNI   72 (167)
Q Consensus        25 G~~~~l~C~a~~~~~~~~~~i~W~k~~~~~~~~~~~-~~--v------~~g~y~c~~   72 (167)
                      -.++.|.|....      ..|.|++++...-..+.+ ..  +      =+|.|.|..
T Consensus        17 dg~V~L~Cn~~~------k~i~W~kdg~~i~~~~~~~ktlnLG~~~~DPRG~Y~C~~   67 (81)
T d1sy6a1          17 DGSVLLTCDAEA------KNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKG   67 (81)
T ss_dssp             SSEEEEEECSCS------SEEEEEETTEEEEEEESSCCCEEEEEGGGCCEEEEEEES
T ss_pred             CCeEEEEeCCCC------cEEEEecCCeEeecccCCcceeecCCcccCCCcceEcCC
Confidence            468999995321      369999985432212211 11  1      179999964