Psyllid ID: psy12725

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MLALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE
Secondary Structure (PSIPRED)
ccccEEEEEEEEEEcccEEEEEEcccccccccccEEEEccccccccEEEEEEEEEccccEEEEEEEEEEccccccEEEEEccEEEEEccccEEEEEEEEEccccEEEEEEccEEccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEcccccccEEEEEEcccEcccccccEEEEEEEEcccccEEEEEEEcccccEEEEEEEEEEcccccccEEcccccEEEEccccEEEEEEEccccccEEEEEEcccEccccc
Coil and Loop (DISEMBL)
MLALKFFtckyegnpvktiswmkdgkpvpdhnepvfridsvrkedKGMYQCVIRNEQESaqasgelklggrfdppvikesfsdetlnpgpnyyfkciasgnptpeiswyldgkklvnae
Flexible Loop (DISEMBL)
MLALKFFtckyegnpvktiswmkdgkpvpdhnepvfridsvrkEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE
Low Complexity Region (SEG)
MLALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE
Disordered region (IsUnstruct)
**ALKFFTCKYEGNPVKTISWMKD**********VFRID*******GMYQCVI**********************************PGPNYYFKCIASGNPTPEISWYLDG*******
Disordered Region (DISOPRED)
MLALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL**KK*****
Disordered Region (DISEMBL)
MLALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE
Disordered Region (DISPRO)
*LALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
Q9VS29	2074	Down syndrome cell adhesi	no	N/A	0.823	0.047	0.476	1e-19
A2AJ76	5100	Hemicentin-2 OS=Mus muscu	no	N/A	0.907	0.021	0.370	7e-13
Q9Z2I4	1366	Roundabout homolog 3 OS=M	no	N/A	0.873	0.076	0.338	2e-11
Q8NDA2	5065	Hemicentin-2 OS=Homo sapi	no	N/A	0.907	0.021	0.327	2e-11
Q96RW7	5635	Hemicentin-1 OS=Homo sapi	no	N/A	0.865	0.018	0.322	4e-10
Q9JMB8	1028	Contactin-6 OS=Mus muscul	no	N/A	0.907	0.105	0.307	4e-10
O94898	1065	Leucine-rich repeats and	no	N/A	0.957	0.107	0.307	5e-10
P97528	1028	Contactin-6 OS=Rattus nor	no	N/A	0.907	0.105	0.316	5e-10
Q52KR2	1054	Leucine-rich repeats and	no	N/A	0.957	0.108	0.307	8e-10
Q90Z04	1249	Cell adhesion molecule-re	N/A	N/A	0.865	0.082	0.314	1e-09

>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2 OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 7/105 (6%)

Query: 13  GNPV--KTISWMKDGKPVPDHN--EPVFRIDSVRKEDKGMYQCVIRN-EQESAQASGELK 67
           G+PV  + I W KDG+ +P     E    +  V +E++GMYQCV+R  E ++ QA+ EL+
Sbjct: 358 GSPVGMQNILWYKDGRQLPSSGRVEDTLVVPRVSRENRGMYQCVVRRPEGDTFQATAELQ 417

Query: 68  LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG 112
           LG    PPV+  SF ++TL PGP    KC A+GNPTP+ISW LDG
Sbjct: 418 LGDA--PPVLLYSFIEQTLQPGPAVSLKCSAAGNPTPQISWTLDG 460

Cell adhesion molecule.
Drosophila melanogaster (taxid: 7227)

>sp|A2AJ76|HMCN2_MOUSE Hemicentin-2 OS=Mus musculus GN=Hmcn2 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 8/116 (6%)

Query: 9    CKYEGNPVKTISWMKDGKPV-PDHNE--PVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
            C+  G+P+  +SWMKDG+P+ P   E  P  +++SV   D G Y C   +E   A+   +
Sbjct: 3462 CEARGSPLPLVSWMKDGEPLLPQSLEQGPGLKLESVSVGDAGTYSCTAASEAGEARRHFQ 3521

Query: 66   LKLGGRFDPPVIKES--FSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
            L +    DPP I+ES   S+ +L PG +    C A G P P I+W+ DG+ L   E
Sbjct: 3522 LTV---MDPPHIEESGETSELSLTPGAHLELLCEARGIPPPNITWHKDGQALRRTE 3574

Mus musculus (taxid: 10090)

>sp|Q9Z2I4|ROBO3_MOUSE Roundabout homolog 3 OS=Mus musculus GN=Robo3 PE=1 SV=2

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 14/118 (11%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP--------DHNEPVFRIDSVRKEDKGMYQCVIRNEQE 58
           F C+ +G+P   + W KD   +P        DH+     ID V  ED+G Y CV  N   
Sbjct: 277 FLCEVQGDPQPNLHWRKDDGELPAGRYEIRSDHS---LWIDQVSSEDEGTYTCVAENSVG 333

Query: 59  SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
            A+ASG L +     PP       ++T+ PG N  F+C   GNP P I W  +G +++
Sbjct: 334 RAEASGSLSV---HVPPQFVTKPQNQTVAPGANVSFQCETKGNPPPAIFWQKEGSQVL 388

Thought to be involved during neural development in axonal navigation at the ventral midline of the neural tube. In spinal chord development plays a role in guiding commissural axons probably by preventing premature sensitivity to Slit proteins thus inhibiting Slit signaling through ROBO1. Required for hindbrain axon midline crossing.

Mus musculus (taxid: 10090)

>sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 8/116 (6%)

Query: 9    CKYEGNPVKTISWMKDGKPVPDHN---EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
            C+  G P+  +SWMKDG+P+   +    P  ++++V   D G Y CV  +E   A+   +
Sbjct: 3428 CEARGVPLPLVSWMKDGEPLLSQSLEQGPSLQLEAVGAGDSGTYSCVAVSEAGEARRHFQ 3487

Query: 66   LKLGGRFDPPVIKESF--SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
            L +    +PP I++S   ++ +L PG      C A G P P I+W+ DG+ L   E
Sbjct: 3488 LTV---MEPPHIEDSGQPTELSLTPGAPMELLCDAQGTPQPNITWHKDGQALTRLE 3540

Homo sapiens (taxid: 9606)

>sp|Q96RW7|HMCN1_HUMAN Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 18/121 (14%)

Query: 7    FTCKYEGNPVKTISWMKDGKPVPDHNEP-------VFRIDSVRKEDKGMYQCVIRNEQES 59
             TC+  G P+ +I+W KDG PV   N         + R+     ED G Y CV+RN    
Sbjct: 2406 LTCEASGIPLPSITWFKDGWPVSLSNSVRILSGGRMLRLMQTTMEDAGQYTCVVRN---- 2461

Query: 60   AQASGELK----LGGRFDPPVIKE-SFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114
              A+GE +    L     P ++ E +  D  +    +    C  +GNP PEI+W+ DG+ 
Sbjct: 2462 --AAGEERKIFGLSVLVPPHIVGENTLEDVKVKEKQSVTLTCEVTGNPVPEITWHKDGQP 2519

Query: 115  L 115
            L
Sbjct: 2520 L 2520

Homo sapiens (taxid: 9606)

>sp|Q9JMB8|CNTN6_MOUSE Contactin-6 OS=Mus musculus GN=Cntn6 PE=2 SV=2

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 9   CKYEGNPVKTISWMK-DGKPVP-----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
           C   GNPV  ISW + DG P+P       ++ +  I   ++ED+G Y+C+  N +    A
Sbjct: 249 CFALGNPVPDISWKRLDGSPMPGKIKYSKSQAILEIPKFQQEDEGFYECIAGNLRGRNLA 308

Query: 63  SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
            G+L     + PP  ++   +  L+   + +++C ASGNP P  +W  +G++L   E
Sbjct: 309 KGQLIF---YAPPEWEQKIQNTYLSIYDSLFWECKASGNPNPSYTWLKNGQRLNTEE 362

Contactins mediate cell surface interactions during nervous system development. Participates in oligodendrocytes generation by acting as a ligand of NOTCH1. Its association with NOTCH1 promotes NOTCH1 activation through the released notch intracellular domain (NICD) and subsequent translocation to the nucleus (By similarity). Involved in motor coordination.

Mus musculus (taxid: 10090)

>sp|O94898|LRIG2_HUMAN Leucine-rich repeats and immunoglobulin-like domains protein 2 OS=Homo sapiens GN=LRIG2 PE=2 SV=3

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 13/127 (10%)

Query: 3   ALKFFTCKYEGNPVKTISWMKDG-KPVPDHNE---------PVFRIDSVRKEDKGMYQCV 52
           A+    C  EG+P   ISW KDG    P   E          VF I +V+ ED G+Y C+
Sbjct: 617 AMARLECAAEGHPAPQISWQKDGGTDFPAARERRMHVMPEDDVFFIANVKIEDMGIYSCM 676

Query: 53  IRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG 112
            +N      A+  L +    + P       D+T+  G     +CIA G+P P ++W  D 
Sbjct: 677 AQNTAGGLSANASLTV---LETPSFIRPLEDKTVTRGETAVLQCIAGGSPAPRLNWTKDD 733

Query: 113 KKLVNAE 119
             L+  E
Sbjct: 734 GPLLVTE 740

Homo sapiens (taxid: 9606)

>sp|P97528|CNTN6_RAT Contactin-6 OS=Rattus norvegicus GN=Cntn6 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 9/117 (7%)

Query: 9   CKYEGNPVKTISWMK-DGKPVP-----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
           C   GNPV  ISW + DG P+P      +++    I   ++ED+G Y+CV  N +    A
Sbjct: 249 CFALGNPVPDISWRRLDGSPMPGKVKYSNSQATLEIPKFQQEDEGFYECVAGNLRGRNLA 308

Query: 63  SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
            G+L     + PP  ++   +  L+   + +++C ASGNP P  +W  +G++L   E
Sbjct: 309 KGQLIF---YAPPEWEQKIQNTYLSIYDSLFWECKASGNPNPSYTWLKNGERLNTEE 362

Contactins mediate cell surface interactions during nervous system development. Participates in oligodendrocytes generation by acting as a ligand of NOTCH1. Its association with NOTCH1 promotes NOTCH1 activation through the released notch intracellular domain (NICD) and subsequent translocation to the nucleus. May be involved in motor coordination.

Rattus norvegicus (taxid: 10116)

>sp|Q52KR2|LRIG2_MOUSE Leucine-rich repeats and immunoglobulin-like domains protein 2 OS=Mus musculus GN=Lrig2 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 13/127 (10%)

Query: 3   ALKFFTCKYEGNPVKTISWMKDG-KPVPDHNE---------PVFRIDSVRKEDKGMYQCV 52
           A+    C  EG+P   ISW KDG    P   E          VF I +V+ ED G+Y C+
Sbjct: 616 AMARLECAAEGHPTPQISWQKDGGTDFPAARERRMHVMPEDDVFFIANVKIEDMGIYSCM 675

Query: 53  IRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG 112
            +N      A+  L +    + P       D+T+  G     +CIA G+P P ++W  D 
Sbjct: 676 AQNIAGGLSANASLTV---LETPSFIRPLEDKTVTRGETAVLQCIAGGSPAPRLNWTKDD 732

Query: 113 KKLVNAE 119
             L+  E
Sbjct: 733 GPLLVTE 739

Mus musculus (taxid: 10090)

>sp|Q90Z04|CDON_XENLA Cell adhesion molecule-related/down-regulated by oncogenes OS=Xenopus laevis GN=cdon PE=2 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 5/108 (4%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----RIDSVRKEDKGMYQCVIRNEQESAQ 61
           F+C+  GNP   I+W  +   +             RI S+  +D G+YQC + NE  SAQ
Sbjct: 333 FSCESRGNPTPNITWFHNAVQIHASTRHQISGNKIRITSLFAQDSGIYQCFVNNEAGSAQ 392

Query: 62  ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY 109
            S    +  ++  PVI    +   +  G      C A+G PTP I WY
Sbjct: 393 VSQRATVHLKWSKPVIVSPPTSIRVANGDLVTLTCNATGIPTPTIRWY 440

Component of a cell-surface receptor complex that mediates cell-cell interactions between muscle precursor cells. Promotes differentiation of myogenic cells.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
108743771	1264	IP15231p [Drosophila melanogaster]	0.932	0.087	0.696	3e-44
195474348	2283	dscam [Drosophila yakuba] gi|194175554|g	0.932	0.048	0.705	3e-44
116007610	2016	down syndrome cell adhesion molecule, is	0.932	0.055	0.696	4e-44
194863848	1317	GG10759 [Drosophila erecta] gi|190662511	0.932	0.084	0.696	4e-44
116007650	2019	down syndrome cell adhesion molecule, is	0.932	0.054	0.696	4e-44
386767231	2016	down syndrome cell adhesion molecule, is	0.932	0.055	0.696	4e-44
45552493	2022	down syndrome cell adhesion molecule, is	0.932	0.054	0.696	4e-44
386767223	2019	down syndrome cell adhesion molecule, is	0.932	0.054	0.696	4e-44
116007626	2017	down syndrome cell adhesion molecule, is	0.932	0.055	0.696	4e-44
195382125	2232	dscam [Drosophila virilis] gi|194144578|	0.932	0.049	0.696	4e-44

>gi|108743771|gb|ABG02194.1| IP15231p [Drosophila melanogaster]

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 78/112 (69%), Positives = 97/112 (86%), Gaps = 1/112 (0%)

Query: 6   FFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
            FTC+Y GNP+KT+SWMKDGK +  H+EPV RI+SV+KEDKGMYQC +RN+QESA+AS E
Sbjct: 362 VFTCQYTGNPIKTVSWMKDGKAI-GHSEPVLRIESVKKEDKGMYQCFVRNDQESAEASAE 420

Query: 66  LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
           LKLGGRFDPPVI+++F +ET+ PGP+ + KC+A GNPTPEISW LDGKK+ N
Sbjct: 421 LKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN 472

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195474348|ref|XP_002089453.1| dscam [Drosophila yakuba] gi|194175554|gb|EDW89165.1| dscam [Drosophila yakuba]

 Score =  181 bits (460), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 79/112 (70%), Positives = 97/112 (86%), Gaps = 1/112 (0%)

Query: 6   FFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
            FTC+Y GNP+KT+SWMKDGK +  H+EPV RI+SV+KEDKGMYQC IRN+QESA+AS E
Sbjct: 526 VFTCQYTGNPIKTVSWMKDGKAI-GHSEPVLRIESVKKEDKGMYQCFIRNDQESAEASAE 584

Query: 66  LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
           LKLGGRFDPPVI+++F +ET+ PGP+ + KC+A GNPTPEISW LDGKK+ N
Sbjct: 585 LKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN 636

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007610|ref|NP_001036501.1| down syndrome cell adhesion molecule, isoform AA [Drosophila melanogaster] gi|113194606|gb|ABI31052.1| down syndrome cell adhesion molecule, isoform AA [Drosophila melanogaster]

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 78/112 (69%), Positives = 97/112 (86%), Gaps = 1/112 (0%)

Query: 6   FFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
            FTC+Y GNP+KT+SWMKDGK +  H+EPV RI+SV+KEDKGMYQC +RN+QESA+AS E
Sbjct: 362 VFTCQYTGNPIKTVSWMKDGKAI-GHSEPVLRIESVKKEDKGMYQCFVRNDQESAEASAE 420

Query: 66  LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
           LKLGGRFDPPVI+++F +ET+ PGP+ + KC+A GNPTPEISW LDGKK+ N
Sbjct: 421 LKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN 472

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194863848|ref|XP_001970644.1| GG10759 [Drosophila erecta] gi|190662511|gb|EDV59703.1| GG10759 [Drosophila erecta]

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 78/112 (69%), Positives = 97/112 (86%), Gaps = 1/112 (0%)

Query: 6   FFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
            FTC+Y GNP+KT+SWMKDGK +  H+EPV RI+SV+KEDKGMYQC +RN+QESA+AS E
Sbjct: 524 VFTCQYTGNPIKTVSWMKDGKAI-GHSEPVLRIESVKKEDKGMYQCFVRNDQESAEASAE 582

Query: 66  LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
           LKLGGRFDPPVI+++F +ET+ PGP+ + KC+A GNPTPEISW LDGKK+ N
Sbjct: 583 LKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN 634

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007650|ref|NP_001036521.1| down syndrome cell adhesion molecule, isoform W [Drosophila melanogaster] gi|113194626|gb|ABI31072.1| down syndrome cell adhesion molecule, isoform W [Drosophila melanogaster]

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 78/112 (69%), Positives = 97/112 (86%), Gaps = 1/112 (0%)

Query: 6   FFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
            FTC+Y GNP+KT+SWMKDGK +  H+EPV RI+SV+KEDKGMYQC +RN+QESA+AS E
Sbjct: 365 VFTCQYTGNPIKTVSWMKDGKAI-GHSEPVLRIESVKKEDKGMYQCFVRNDQESAEASAE 423

Query: 66  LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
           LKLGGRFDPPVI+++F +ET+ PGP+ + KC+A GNPTPEISW LDGKK+ N
Sbjct: 424 LKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN 475

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386767231|ref|NP_001246178.1| down syndrome cell adhesion molecule, isoform BT [Drosophila melanogaster] gi|383302307|gb|AFH07933.1| down syndrome cell adhesion molecule, isoform BT [Drosophila melanogaster]

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 78/112 (69%), Positives = 97/112 (86%), Gaps = 1/112 (0%)

Query: 6   FFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
            FTC+Y GNP+KT+SWMKDGK +  H+EPV RI+SV+KEDKGMYQC +RN+QESA+AS E
Sbjct: 362 VFTCQYTGNPIKTVSWMKDGKAI-GHSEPVLRIESVKKEDKGMYQCFVRNDQESAEASAE 420

Query: 66  LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
           LKLGGRFDPPVI+++F +ET+ PGP+ + KC+A GNPTPEISW LDGKK+ N
Sbjct: 421 LKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN 472

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45552493|ref|NP_995769.1| down syndrome cell adhesion molecule, isoform E [Drosophila melanogaster] gi|45445657|gb|AAS64901.1| down syndrome cell adhesion molecule, isoform E [Drosophila melanogaster]

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 78/112 (69%), Positives = 97/112 (86%), Gaps = 1/112 (0%)

Query: 6   FFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
            FTC+Y GNP+KT+SWMKDGK +  H+EPV RI+SV+KEDKGMYQC +RN+QESA+AS E
Sbjct: 362 VFTCQYTGNPIKTVSWMKDGKAI-GHSEPVLRIESVKKEDKGMYQCFVRNDQESAEASAE 420

Query: 66  LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
           LKLGGRFDPPVI+++F +ET+ PGP+ + KC+A GNPTPEISW LDGKK+ N
Sbjct: 421 LKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN 472

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386767223|ref|NP_001246175.1| down syndrome cell adhesion molecule, isoform BP [Drosophila melanogaster] gi|383302303|gb|AFH07930.1| down syndrome cell adhesion molecule, isoform BP [Drosophila melanogaster]

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 78/112 (69%), Positives = 97/112 (86%), Gaps = 1/112 (0%)

Query: 6   FFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
            FTC+Y GNP+KT+SWMKDGK +  H+EPV RI+SV+KEDKGMYQC +RN+QESA+AS E
Sbjct: 364 VFTCQYTGNPIKTVSWMKDGKAI-GHSEPVLRIESVKKEDKGMYQCFVRNDQESAEASAE 422

Query: 66  LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
           LKLGGRFDPPVI+++F +ET+ PGP+ + KC+A GNPTPEISW LDGKK+ N
Sbjct: 423 LKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN 474

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|116007626|ref|NP_001036509.1| down syndrome cell adhesion molecule, isoform M [Drosophila melanogaster] gi|113194614|gb|ABI31060.1| down syndrome cell adhesion molecule, isoform M [Drosophila melanogaster]

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 78/112 (69%), Positives = 97/112 (86%), Gaps = 1/112 (0%)

Query: 6   FFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
            FTC+Y GNP+KT+SWMKDGK +  H+EPV RI+SV+KEDKGMYQC +RN+QESA+AS E
Sbjct: 362 VFTCQYTGNPIKTVSWMKDGKAI-GHSEPVLRIESVKKEDKGMYQCFVRNDQESAEASAE 420

Query: 66  LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
           LKLGGRFDPPVI+++F +ET+ PGP+ + KC+A GNPTPEISW LDGKK+ N
Sbjct: 421 LKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN 472

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195382125|ref|XP_002049781.1| dscam [Drosophila virilis] gi|194144578|gb|EDW60974.1| dscam [Drosophila virilis]

 Score =  181 bits (459), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 78/112 (69%), Positives = 97/112 (86%), Gaps = 1/112 (0%)

Query: 6   FFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
            FTC+Y GNP+KT+SWMKDGK +  H+EPV RI+SV+KEDKGMYQC +RN+QESA+AS E
Sbjct: 474 VFTCQYTGNPIKTVSWMKDGKAI-GHSEPVLRIESVKKEDKGMYQCFVRNDQESAEASAE 532

Query: 66  LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
           LKLGGRFDPPVI+++F +ET+ PGP+ + KC+A GNPTPEISW LDGKK+ N
Sbjct: 533 LKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN 584

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
FB|FBgn0033159	2037	Dscam "Down syndrome cell adhe	0.924	0.054	0.702	2.7e-42
FB|FBgn0263219	1918	Dscam4 "Down syndrome cell adh	0.873	0.054	0.433	3e-19
FB|FBgn0261046	2046	Dscam3 "Down syndrome cell adh	0.915	0.053	0.338	3.2e-14
MGI|MGI:2677838	5100	Hmcn2 "hemicentin 2" [Mus musc	0.907	0.021	0.370	3.4e-12
MGI|MGI:1343102	1366	Robo3 "roundabout homolog 3 (D	0.899	0.078	0.330	1.5e-11
UNIPROTKB|F1S0Y1	4061	F1S0Y1 "Uncharacterized protei	0.873	0.025	0.357	2.4e-11
UNIPROTKB|E1B9K4	5073	E1B9K4 "Uncharacterized protei	0.924	0.021	0.347	3.1e-11
UNIPROTKB|F6UXF9	3263	F6UXF9 "Uncharacterized protei	0.873	0.031	0.357	3.1e-11
UNIPROTKB|F1PEU6	5106	F1PEU6 "Uncharacterized protei	0.873	0.020	0.357	5e-11
RGD|1311018	1326	Robo3 "roundabout, axon guidan	0.899	0.080	0.321	6.2e-11

FB|FBgn0033159 Dscam "Down syndrome cell adhesion molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 463 (168.0 bits), Expect = 2.7e-42, P = 2.7e-42
 Identities = 78/111 (70%), Positives = 97/111 (87%)

Query:     7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
             FTC+Y GNP+KT+SWMKDGK +  H+EPV RI+SV+KEDKGMYQC +RN+QESA+AS EL
Sbjct:   363 FTCQYTGNPIKTVSWMKDGKAI-GHSEPVLRIESVKKEDKGMYQCFVRNDQESAEASAEL 421

Query:    67 KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
             KLGGRFDPPVI+++F +ET+ PGP+ + KC+A GNPTPEISW LDGKK+ N
Sbjct:   422 KLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN 472

GO:0005887 "integral to plasma membrane" evidence=ISM;ISS

GO:0007411 "axon guidance" evidence=IGI;IMP;TAS

GO:0008046 "axon guidance receptor activity" evidence=IMP;NAS

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0051635 "bacterial cell surface binding" evidence=IDA

GO:0048666 "neuron development" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=IMP;IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0021551 "central nervous system morphogenesis" evidence=IMP

GO:0048846 "axon extension involved in axon guidance" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

FB|FBgn0263219 Dscam4 "Down syndrome cell adhesion molecule 4" [Drosophila melanogaster (taxid:7227)]

 Score = 246 (91.7 bits), Expect = 3.0e-19, P = 3.0e-19
 Identities = 49/113 (43%), Positives = 66/113 (58%)

Query:     7 FTCKYEGNPVKTISWMKDGKPVPDHNE-------PVFRIDSVRKEDKGMYQCVIRNEQES 59
             F C   G+PV  ++W+ DGKP+   N        P   I  V+KED GMYQC + NE E 
Sbjct:   349 FQCIVSGHPVHDVNWLHDGKPILRDNRVEILTDPPRLIIKKVQKEDPGMYQCFVSNEWEQ 408

Query:    60 AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG 112
              Q++ EL+LG     P +   FS++TL PGP    KC+A+GNP P+ +W LDG
Sbjct:   409 IQSTAELQLGDA--SPELLYWFSEQTLQPGPTVSLKCVATGNPLPQFTWSLDG 459

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

FB|FBgn0261046 Dscam3 "Down syndrome cell adhesion molecule 3" [Drosophila melanogaster (taxid:7227)]

 Score = 199 (75.1 bits), Expect = 3.2e-14, P = 3.2e-14
 Identities = 42/124 (33%), Positives = 69/124 (55%)

Query:     7 FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVR-------------KEDKGMYQCVI 53
             F C   G+ +  I W+ +GKP+  +N      D++R             + D+G+YQC++
Sbjct:   360 FNCTTTGSAIDAIDWLHNGKPLQANNALTTGRDNIRFLSKSSLLVQNVGRRDRGVYQCLV 419

Query:    54 RNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
              N++ SAQA  ELKLG    P +I  +F ++ + PGP    KC ASG+P P+ +W LD +
Sbjct:   420 ENQRASAQAMAELKLGDTV-PELIY-TFIEQNVRPGPLISLKCSASGSPPPQFAWLLDSQ 477

Query:   114 KLVN 117
              +++
Sbjct:   478 PIMD 481

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=IC

GO:0042802 "identical protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=ISM

MGI|MGI:2677838 Hmcn2 "hemicentin 2" [Mus musculus (taxid:10090)]

 Score = 184 (69.8 bits), Expect = 3.4e-12, P = 3.4e-12
 Identities = 43/116 (37%), Positives = 63/116 (54%)

Query:     9 CKYEGNPVKTISWMKDGKPV-PDHNE--PVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
             C+  G+P+  +SWMKDG+P+ P   E  P  +++SV   D G Y C   +E   A+   +
Sbjct:  3462 CEARGSPLPLVSWMKDGEPLLPQSLEQGPGLKLESVSVGDAGTYSCTAASEAGEARRHFQ 3521

Query:    66 LKLGGRFDPPVIKES--FSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
             L +    DPP I+ES   S+ +L PG +    C A G P P I+W+ DG+ L   E
Sbjct:  3522 LTV---MDPPHIEESGETSELSLTPGAHLELLCEARGIPPPNITWHKDGQALRRTE 3574

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005604 "basement membrane" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0030054 "cell junction" evidence=IDA

GO:0050896 "response to stimulus" evidence=IEA

MGI|MGI:1343102 Robo3 "roundabout homolog 3 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 172 (65.6 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 38/115 (33%), Positives = 56/115 (48%)

Query:     7 FTCKYEGNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61
             F C+ +G+P   + W KD   +P       ++    ID V  ED+G Y CV  N    A+
Sbjct:   277 FLCEVQGDPQPNLHWRKDDGELPAGRYEIRSDHSLWIDQVSSEDEGTYTCVAENSVGRAE 336

Query:    62 ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
             ASG L +     PP       ++T+ PG N  F+C   GNP P I W  +G +++
Sbjct:   337 ASGSLSV---HVPPQFVTKPQNQTVAPGANVSFQCETKGNPPPAIFWQKEGSQVL 388

GO:0001764 "neuron migration" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006935 "chemotaxis" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007411 "axon guidance" evidence=IGI;IMP;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0030154 "cell differentiation" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

UNIPROTKB|F1S0Y1 F1S0Y1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 175 (66.7 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 40/112 (35%), Positives = 63/112 (56%)

Query:     9 CKYEGNPVKTISWMKDGKPV-PDHNE--PVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
             C+  G+P+  +SWMK+G+P+ P   E  P  ++++V   D G Y CV  +E   A+   +
Sbjct:  2422 CEARGSPLPLVSWMKNGEPLLPQSLEQGPGLQLETVGAGDSGTYSCVAVSEAGEARRHFQ 2481

Query:    66 LKLGGRFDPPVIKESF--SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
             L +    DPP I++S   ++ +L PG      C A G PTP I+W+ DG+ L
Sbjct:  2482 LTV---MDPPHIEDSGQPAELSLTPGAPLELLCDARGTPTPNITWHKDGQAL 2530

GO:0030054 "cell junction" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|E1B9K4 E1B9K4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 175 (66.7 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 41/118 (34%), Positives = 61/118 (51%)

Query:     3 ALKFFTCKYEGNPVKTISWMKDGKPV-PDHNE--PVFRIDSVRKEDKGMYQCVIRNEQES 59
             +L F  C+  G+P+  +SW+KDG+P+ P   E  P   +++      G Y CV  +E   
Sbjct:  3427 SLVFLPCEARGSPLPFVSWVKDGEPLLPQSLEHGPGLLLEAAEAGHAGTYSCVAVSEAGE 3486

Query:    60 AQASGELKLGGRFDPPVIKESFSDETL--NPGPNYYFKCIASGNPTPEISWYLDGKKL 115
             A+   +L +    DPP I++S   E L   PG      C A G PTP I+W+ DG+ L
Sbjct:  3487 ARRHFQLTV---MDPPYIEDSDQPEELLLTPGTPLELLCDARGTPTPNITWHKDGRAL 3541

GO:0030054 "cell junction" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F6UXF9 F6UXF9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 173 (66.0 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 40/112 (35%), Positives = 60/112 (53%)

Query:     9 CKYEGNPVKTISWMKDGKPV-PDHNE--PVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
             C+  G+P+  +SWMKDG+P+ P   E  P   +++    D G Y CV  +E   A+   +
Sbjct:  1664 CEARGSPLPLVSWMKDGEPLLPQSLEQGPSLLLETAGAGDAGTYSCVAVSEAGEARRHFQ 1723

Query:    66 LKLGGRFDPPVIKESF--SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
             L +    DPP I++S   ++  L PG      C A GNP P I+W+ DG+ L
Sbjct:  1724 LTV---MDPPYIEDSGQPAELLLTPGTPLELHCEARGNPPPNITWHKDGQGL 1772

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1PEU6 F1PEU6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 173 (66.0 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 40/112 (35%), Positives = 60/112 (53%)

Query:     9 CKYEGNPVKTISWMKDGKPV-PDHNE--PVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
             C+  G+P+  +SWMKDG+P+ P   E  P   +++    D G Y CV  +E   A+   +
Sbjct:  3471 CEARGSPLPLVSWMKDGEPLLPQSLEQGPSLLLETAGAGDAGTYSCVAVSEAGEARRHFQ 3530

Query:    66 LKLGGRFDPPVIKESF--SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
             L +    DPP I++S   ++  L PG      C A GNP P I+W+ DG+ L
Sbjct:  3531 LTV---MDPPYIEDSGQPAELLLTPGTPLELHCEARGNPPPNITWHKDGQGL 3579

GO:0005509 "calcium ion binding" evidence=IEA

RGD|1311018 Robo3 "roundabout, axon guidance receptor, homolog 3 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 166 (63.5 bits), Expect = 6.2e-11, P = 6.2e-11
 Identities = 37/115 (32%), Positives = 55/115 (47%)

Query:     7 FTCKYEGNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61
             F C+ +G+P   + W KD   +P       ++    I+ V  ED+G Y CV  N    A+
Sbjct:   238 FLCEVQGDPQPNLRWRKDDGELPTGRYEIRSDHSLWIEQVSAEDEGTYTCVAENSVGRAE 297

Query:    62 ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
             ASG L +     PP       ++T  PG N  F+C   GNP P I W  +G +++
Sbjct:   298 ASGSLSV---HVPPQFVTKPQNQTAAPGENVSFQCETKGNPPPAIFWQKEGSQVL 349

GO:0001764 "neuron migration" evidence=ISO

GO:0007411 "axon guidance" evidence=ISO

GO:0016199 "axon midline choice point recognition" evidence=ISO

GO:0030424 "axon" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	119
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	9e-15
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	4e-14
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	3e-12
cd00096	74	cd00096, Ig, Immunoglobulin domain	1e-11
smart00410	85	smart00410, IG_like, Immunoglobulin like	3e-10
smart00409	85	smart00409, IG, Immunoglobulin	3e-10
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	1e-08
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	6e-08
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	1e-07
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	2e-07
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	2e-07
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	4e-07
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	5e-07
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	1e-06
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	1e-06
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	1e-06
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	2e-06
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	4e-06
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	4e-06
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	5e-06
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	6e-06
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	1e-05
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-05
cd04977	92	cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig	2e-05
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	3e-05
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	5e-05
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	6e-05
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	9e-05
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	9e-05
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	1e-04
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	2e-04
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	2e-04
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	2e-04
cd00096	74	cd00096, Ig, Immunoglobulin domain	3e-04
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	3e-04
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	3e-04
pfam08205	89	pfam08205, C2-set_2, CD80-like C2-set immunoglobul	5e-04
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	6e-04
smart00410	85	smart00410, IG_like, Immunoglobulin like	0.001
smart00409	85	smart00409, IG, Immunoglobulin	0.001
pfam00047	62	pfam00047, ig, Immunoglobulin domain	0.001
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	0.002
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	0.002
cd05868	76	cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-lik	0.002
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	0.002
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	0.003
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	0.004
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	0.004

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 63.2 bits (154), Expect = 9e-15
 Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 5/55 (9%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----RIDSVRKEDKGMYQCVIRNE 56
           TC  EGNPV  I+W+KDGKP+P+ N  V       I SV  ED G+Y CV  N 
Sbjct: 7  LTCPAEGNPVPNITWLKDGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCVAENS 61

Length = 63

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 62.3 bits (152), Expect = 4e-14
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 9/71 (12%)

Query: 6  FFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
           FTC   G+P  T+SW KDG+P+          +       I +V+ +D+G Y CV  N 
Sbjct: 19 RFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNS 78

Query: 57 QESAQASGELK 67
             A+AS EL 
Sbjct: 79 AGEAEASAELT 89

Length = 90

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 57.6 bits (139), Expect = 3e-12
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 6  FFTCKYEGNPVKTISWMKDGKPVPDHNE-----PVFRIDSVRKEDKGMYQCVIRNEQESA 60
           + CK  GNP     W+K+G+P+   N         RI  +   D GMYQCV  N+  + 
Sbjct: 18 RWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTI 77

Query: 61 QASGELKL 68
           AS EL +
Sbjct: 78 YASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 56.0 bits (134), Expect = 1e-11
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 13/70 (18%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------------IDSVRKEDKGMYQCVI 53
           TC   G P  TI+W+K+GKP+P       R             I +V  ED G Y CV 
Sbjct: 3  LTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVA 62

Query: 54 RNEQESAQAS 63
           N   +  AS
Sbjct: 63 SNSAGTVSAS 72

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 52.1 bits (125), Expect = 3e-10
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 10/71 (14%)

Query: 7  FTCKYEGNPVKTISWMKDG----------KPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE 56
           +C+  G+P   ++W K G                +     I +V  ED G Y C   N 
Sbjct: 14 LSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNS 73

Query: 57 QESAQASGELK 67
            SA +   L 
Sbjct: 74 SGSASSGTTLT 84

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 52.1 bits (125), Expect = 3e-10
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 10/71 (14%)

Query: 7  FTCKYEGNPVKTISWMKDG----------KPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE 56
           +C+  G+P   ++W K G                +     I +V  ED G Y C   N 
Sbjct: 14 LSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNS 73

Query: 57 QESAQASGELK 67
            SA +   L 
Sbjct: 74 SGSASSGTTLT 84

Length = 85

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 48.5 bits (116), Expect = 1e-08
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 10/60 (16%)

Query: 13 GNPVKTISWMKDGKPVPDHNEPV-------FRIDSVRKEDKGMYQCVIRN---EQESAQA 62
          G+P  T+SW KDG+P+   NE V         I   RK D+G Y+CV  N   E+ESA A
Sbjct: 23 GHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAA 82

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 46.1 bits (109), Expect = 6e-08
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 12/69 (17%)

Query: 7  FTCKYEGNPVKTISWMKDG---------KPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
          F C+  G P  T+ W+K+G         K V +HN  V     + K D+G YQC+  N+ 
Sbjct: 4  FECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVL---GLVKSDEGFYQCIAENDV 60

Query: 58 ESAQASGEL 66
           + QA  +L
Sbjct: 61 GNVQAGAQL 69

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 16/66 (24%)

Query: 7  FTCKYEGNPVKTISWMKDGKPV--------------PDHNEPVFRIDSVRK--EDKGMYQ 50
            CK EG P  TI W+K+G+P+              P  +    R+   RK   D+G+Y 
Sbjct: 21 LNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80

Query: 51 CVIRNE 56
          CV  N 
Sbjct: 81 CVAHNS 86

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 45.1 bits (107), Expect = 2e-07
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQES 59
           TC   GNP    +W KDG P+       F   +V  ED G Y CV  N    
Sbjct: 19 LTCSAPGNPPPNYTWYKDGVPLSSSQNGFF-TPNVSAEDSGTYTCVASNGGGG 70

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 44.7 bits (106), Expect = 2e-07
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 10/71 (14%)

Query: 7  FTCKYEGNPVKTISWMKDGKP-VPDHNEPVFR---------IDSVRKEDKGMYQCVIRNE 56
            C   GNP  TI+W+KDGKP   +H    ++         ++SV   D G Y C++ N+
Sbjct: 14 LKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENK 73

Query: 57 QESAQASGELK 67
            S   + ++ 
Sbjct: 74 YGSINHTYKVD 84

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 43.5 bits (103), Expect = 4e-07
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61
          F C+  G+PV T+ W K+   +P       ++   +I +V   D+G Y C   N     +
Sbjct: 3  FQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIE 62

Query: 62 ASGEL 66
          AS  L
Sbjct: 63 ASASL 67

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 43.5 bits (103), Expect = 5e-07
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 6/59 (10%)

Query: 9  CKYEGNPVKTISWMKDGKPVP------DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61
          C  EG P   ISW+K G  +P      ++     +ID+V +ED G Y+C   N   SA+
Sbjct: 5  CIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSAR 63

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 43.3 bits (102), Expect = 1e-06
 Identities = 17/43 (39%), Positives = 21/43 (48%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
           PP I E  SD  ++ G      C A G PTP I W  +G+ L 
Sbjct: 1   PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLE 43

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 42.9 bits (101), Expect = 1e-06
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 10/70 (14%)

Query: 7  FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
          F C   GNP  T+ W+K+GK    +H    +++         +SV   DKG Y CV+ NE
Sbjct: 14 FRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 73

Query: 57 QESAQASGEL 66
            S   +  L
Sbjct: 74 YGSINHTYHL 83

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 42.7 bits (100), Expect = 1e-06
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 7  FTCKYEGNPVK-TISWMKDGK-----PVPDHNEPVFRIDSVRKEDKGMYQCVIRN 55
           TC  EG P   TISW ++G           +     + SV  ED G Y CV  N
Sbjct: 20 LTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 42.0 bits (99), Expect = 2e-06
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNE-PVFRIDS-------VRKEDKGMYQCVIRNEQE 58
            C+ EG P  TI+W  +G P+ +    P  R+D        V+  D  +YQC   N   
Sbjct: 6  LDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHG 65

Query: 59 SAQA 62
             A
Sbjct: 66 YLLA 69

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 41.5 bits (97), Expect = 4e-06
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 14/70 (20%)

Query: 9  CKYEGNPVKTISWMKDG------------KPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE 56
          C   G+P   I+W KDG              +P+  + VF I  V+ ED G+Y C  +N 
Sbjct: 5  CAATGHPTPQIAWQKDGGTDFPAARERRMHVMPE--DDVFFIVDVKIEDTGVYSCTAQNT 62

Query: 57 QESAQASGEL 66
            S  A+  L
Sbjct: 63 AGSISANATL 72

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 41.7 bits (98), Expect = 4e-06
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 13 GNPVKTISWMK-DGKPVP----DHNEPVFRIDSVRKEDKGMYQCVIRN 55
          GNPV  I W K DG          +  V +I +++ ED+G Y+C   N
Sbjct: 27 GNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAEN 74

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 41.6 bits (97), Expect = 5e-06
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQ 57
          F+C  +G P  T++WM++G+ +             +  F I  V+  D+G Y  V+ N +
Sbjct: 23 FSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSE 82

Query: 58 ESAQA 62
             +A
Sbjct: 83 GKQEA 87

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 41.2 bits (97), Expect = 6e-06
 Identities = 13/23 (56%), Positives = 14/23 (60%)

Query: 94  FKCIASGNPTPEISWYLDGKKLV 116
            KC ASGNP P I+W  DGK   
Sbjct: 14  LKCPASGNPRPTITWLKDGKPFK 36

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 40.2 bits (94), Expect = 1e-05
 Identities = 14/25 (56%), Positives = 17/25 (68%)

Query: 95  KCIASGNPTPEISWYLDGKKLVNAE 119
           KC+ASGNP P+I+W  D K L   E
Sbjct: 15  KCVASGNPRPDITWLKDNKPLTPTE 39

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 39.9 bits (94), Expect = 2e-05
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 94  FKCIASGNPTPEISWYLDGKKL 115
           F C  +G+P P +SW+ DG+ L
Sbjct: 20  FTCTVTGDPDPTVSWFKDGQPL 41

Length = 90

>gnl|CDD|143178 cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

 Score = 39.8 bits (93), Expect = 2e-05
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 12/68 (17%)

Query: 5  KFFTCKYEGNPVKTISWMKDG--KPVPDHNEPVFRIDSVRK---------EDKGMYQCVI 53
          KFF C+  G P K ISW      K V      V + D VR          ED G+Y+CV 
Sbjct: 18 KFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVA 76

Query: 54 RNEQESAQ 61
           + + +  
Sbjct: 77 TDAKGTES 84

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 92

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 39.5 bits (92), Expect = 3e-05
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 9  CKYEGNPVKTISWMKDGKPVPDHNEPV-FRIDS-------VRKEDKGMYQCVIRNEQESA 60
          C  +G P  T++W KDG+P+    E   F  D        V K D+  Y C+  N+    
Sbjct: 25 CDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQ 84

Query: 61 QASGELKL 68
          +A   LK+
Sbjct: 85 EAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 38.4 bits (89), Expect = 5e-05
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVP-DHNEPV-----FRIDSVRKEDKGMYQC 51
          F C+ +G P   I+W K G  +  D    V      RI  V   D+G Y+C
Sbjct: 7  FLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYEC 57

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 38.2 bits (89), Expect = 6e-05
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 94  FKCIASGNPTPEISWYLDGKKL 115
             C A GNP P I+W  DGK L
Sbjct: 7   LTCPAEGNPVPNITWLKDGKPL 28

Length = 63

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 37.8 bits (88), Expect = 9e-05
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
            PV+  S +   +  G +    C A GNP P  +WY DG  L
Sbjct: 1   KPVLTPSPT--VVFEGEDVTLTCSAPGNPPPNYTWYKDGVPL 40

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 37.5 bits (87), Expect = 9e-05
 Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 8  TCKYEGNPVKTISWMKDGKPVPD----HNEP--VFRIDSVRKEDKGMYQCVIRNEQESAQ 61
           C  +G+P  TI+W KDG  V +    H  P     I  V   D+G Y+CV RN    A 
Sbjct: 4  PCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYAS 63

Query: 62 ASGEL 66
           S  L
Sbjct: 64 VSMVL 68

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 37.5 bits (87), Expect = 1e-04
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 9/60 (15%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEPV---------FRIDSVRKEDKGMYQCVIRNEQ 57
          FTC   G P   I+W  +   VPD                I  V++ D+G Y C   N +
Sbjct: 6  FTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTR 65

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 12/67 (17%)

Query: 9  CKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRNEQES 59
          CK +  P  TISW K  + +         PD +     I +V K D+G Y C   N    
Sbjct: 8  CKPKAAPKPTISWSKGTELLTNSSRICIWPDGS---LEILNVTKSDEGKYTCFAENFFGK 64

Query: 60 AQASGEL 66
          A ++G L
Sbjct: 65 ANSTGSL 71

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 36.8 bits (85), Expect = 2e-04
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 9/57 (15%)

Query: 9  CKYEGNPVKTISWMKDGKPV----PDH-----NEPVFRIDSVRKEDKGMYQCVIRNE 56
          C  EG P+  ++W+K+G  +            N     I +VR ED G Y C+ +NE
Sbjct: 5  CHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNE 61

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 36.4 bits (84), Expect = 2e-04
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 9  CKYEGNPVKTISWMKDGKPVP------DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61
          C  EG P   + W +   P+        +N    ++D+V + D G Y C   N + SA+
Sbjct: 5  CIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSAR 63

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 36.7 bits (84), Expect = 3e-04
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 94  FKCIASGNPTPEISWYLDGKKLVN 117
             C+ASG P P I+W  +GK L +
Sbjct: 3   LTCLASGPPPPTITWLKNGKPLPS 26

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 36.3 bits (84), Expect = 3e-04
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 9  CKYEGNPVKTISWMKDGKPVPDHN-------EPVFRIDSVRKEDKGMYQCVIRN 55
          C   GNP   I+W+KD KP+           +    + +++ ED G Y C + N
Sbjct: 16 CVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSN 69

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 36.5 bits (84), Expect = 3e-04
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 9  CKYEGNPVKTISWMKDGKPVPDHNE-----PVFRIDSVRKEDKGMYQCVIRN 55
          C   GNPV  I W K  +P+P   E      V +I +++ ED+G Y+C   N
Sbjct: 23 CFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAEN 74

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|219745 pfam08205, C2-set_2, CD80-like C2-set immunoglobulin domain

 Score = 36.2 bits (84), Expect = 5e-04
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 87  NPGPNYYFKCIAS-GNPTPEISWYLDGKKLVNAE 119
                    C ++ G P P I+WYLDG++L    
Sbjct: 12  GENLEVVATCSSAGGKPAPRITWYLDGRELEAIT 45

These domains belong to the immunoglobulin superfamily. Length = 89

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 35.8 bits (82), Expect = 6e-04
 Identities = 14/35 (40%), Positives = 15/35 (42%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 108
           P  I   F D     G N   +C A GNP P I W
Sbjct: 1   PADINVKFKDTYALKGQNVTLECFALGNPVPVIRW 35

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 94  FKCIASGNPTPEISWYLDGKKLV 116
             C ASG+P PE++WY  G KL+
Sbjct: 14  LSCEASGSPPPEVTWYKQGGKLL 36

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 94  FKCIASGNPTPEISWYLDGKKLV 116
             C ASG+P PE++WY  G KL+
Sbjct: 14  LSCEASGSPPPEVTWYKQGGKLL 36

Length = 85

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 10/56 (17%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVP-------DHNEP---VFRIDSVRKEDKGMYQCV 52
           TC   G P   ++W K+GK +        D N        I +V  ED G Y CV
Sbjct: 6  LTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTCV 61

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 34.3 bits (79), Expect = 0.002
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 89  GPNYYFKCIASGNPTPEISWYLDGKKLVNA 118
           G      C A G P P I+W L+G  +   
Sbjct: 1   GETGRLDCEAEGIPQPTITWRLNGVPIEEL 30

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 34.3 bits (79), Expect = 0.002
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 10 KYEGNPVKTISWMKDGKPVPDHNEPVFR-----IDSVRKEDKGMYQCVIRNEQ 57
          K +  P   I W K+GK + + N          I  V +ED G Y  V+ N+Q
Sbjct: 6  KVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQ 58

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143276 cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

 Score = 34.2 bits (78), Expect = 0.002
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 12/58 (20%)

Query: 9  CKYEGNPVKTISWMKDGKPV---PDHNEPVFRID-------SVRKEDKGMYQCVIRNE 56
          C+  GNP  +ISW+ +G P+   P   +P  ++D        V++    +YQC   NE
Sbjct: 8  CRANGNPKPSISWLTNGVPIEIAPT--DPSRKVDGDTIIFSKVQERSSAVYQCNASNE 63

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 76

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 34.1 bits (78), Expect = 0.002
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 9  CKYEGNPVKTISWMKDGKPVPD--------HNEPVFRIDSVRKEDKGMYQCVIRNEQESA 60
          C  +G+P  T  W +DG P+ D          E    + S   +D G+Y C   N   S 
Sbjct: 5  CHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSV 64

Query: 61 QASGELKL 68
           +S    L
Sbjct: 65 CSSQNFTL 72

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 34.1 bits (78), Expect = 0.003
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 94  FKCIASGNPTPEISWYLDGK 113
           F+C A+GNPTP + W  +GK
Sbjct: 14  FRCPAAGNPTPTMRWLKNGK 33

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 33.6 bits (77), Expect = 0.004
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 10/59 (16%)

Query: 8  TCKYEGNPVKTISWMKDGKPVP--DH--------NEPVFRIDSVRKEDKGMYQCVIRNE 56
          TC   G+P   +SW+K+ + +   DH              I  V  ED G Y  V++N+
Sbjct: 22 TCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNK 80

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 33.6 bits (77), Expect = 0.004
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 13/61 (21%)

Query: 9  CKYEGNPVKTISWMKDGKPVP-DHNEPV-------FRIDSVR-----KEDKGMYQCVIRN 55
          C  EG P   I W KDG  +    +E           I SV      K D+G YQCV +N
Sbjct: 21 CSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQN 80

Query: 56 E 56
          +
Sbjct: 81 D 81

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
KOG3513|consensus	1051		99.87
PHA02826	227	IL-1 receptor-like protein; Provisional	99.78
KOG4221|consensus	1381		99.77
KOG3513|consensus	1051		99.76
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.76
KOG4194|consensus	873		99.75
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.75
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.74
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.74
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.74
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.74
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.73
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.73
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.73
PHA02785	326	IL-beta-binding protein; Provisional	99.72
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.71
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.71
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.7
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.69
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.69
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.69
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.69
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.68
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.68
PHA02785	326	IL-beta-binding protein; Provisional	99.68
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.68
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.68
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.67
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.67
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.66
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.66
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.66
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.65
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.65
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.64
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.64
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.64
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.64
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.64
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.64
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.64
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.64
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.64
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.64
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.63
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.63
KOG4221|consensus	1381		99.63
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.63
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.62
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.62
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.62
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.62
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.62
KOG4194|consensus	873		99.61
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.61
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.61
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.61
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.61
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.61
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.6
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.6
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.6
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.6
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.59
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.59
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.58
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.58
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.57
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.56
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.55
KOG4222|consensus	1281		99.54
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.54
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.53
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.53
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.52
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.52
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.52
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.52
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.51
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.51
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.5
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.5
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.49
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.49
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.49
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.49
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.48
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.48
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.46
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.45
KOG4222|consensus	1281		99.45
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.45
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.45
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.44
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.42
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.41
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.41
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.39
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.37
PHA03376	221	BARF1; Provisional	99.36
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.32
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.3
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.28
PHA02826	227	IL-1 receptor-like protein; Provisional	99.28
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.27
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.26
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.25
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.25
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.25
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.24
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.23
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.2
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	99.18
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.17
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	99.13
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.11
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	99.09
smart00409	86	IG Immunoglobulin.	99.09
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.09
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.07
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	99.06
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	99.05
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	99.05
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.04
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.03
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	99.02
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	99.0
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.99
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.96
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	98.91
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.91
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.9
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.89
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.88
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.87
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.87
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	98.83
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	98.83
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.81
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.81
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.8
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.79
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.79
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.78
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.77
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.77
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.76
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.74
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.72
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.71
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.7
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.69
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.68
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.68
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.67
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	98.66
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	98.66
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.66
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.64
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.64
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.63
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.63
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.63
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.63
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.62
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	98.61
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.61
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	98.6
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.59
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	98.59
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.59
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.59
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.59
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.59
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.58
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.58
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	98.56
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.56
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.55
KOG3515|consensus	741		98.54
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.53
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	98.51
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	98.5
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.5
KOG3515|consensus	741		98.5
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.44
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.43
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.42
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.42
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.41
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.38
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.37
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	98.37
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.37
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.37
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	98.36
smart00407	75	IGc1 Immunoglobulin C-Type.	98.36
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.34
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.34
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.34
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	98.34
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.33
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	98.33
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.31
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.31
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.3
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.29
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	98.28
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.28
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.28
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.28
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.28
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.25
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	98.24
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.23
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.23
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	98.23
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.23
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	98.22
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.2
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.19
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.18
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.18
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.15
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.15
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.15
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.14
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.13
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	98.13
smart00406	81	IGv Immunoglobulin V-Type.	98.1
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.08
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.07
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	98.05
PHA02633	63	hypothetical protein; Provisional	98.05
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.05
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	98.04
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.04
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	98.04
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	98.03
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	98.03
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.02
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.01
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	97.99
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.98
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	97.97
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.97
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	97.95
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	97.94
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	97.94
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	97.92
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.92
PHA03273	486	envelope glycoprotein C; Provisional	97.91
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	97.9
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	97.9
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	97.9
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	97.9
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	97.9
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	97.89
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.89
PHA03270	466	envelope glycoprotein C; Provisional	97.88
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	97.87
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	97.86
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	97.86
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	97.83
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	97.83
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	97.82
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	97.81
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	97.78
smart00408	63	IGc2 Immunoglobulin C-2 Type.	97.77
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.76
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.75
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	97.74
PHA03269	566	envelope glycoprotein C; Provisional	97.72
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.69
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	97.69
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	97.67
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	97.64
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.63
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.59
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.58
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	97.58
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.57
PHA03271	490	envelope glycoprotein C; Provisional	97.56
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	97.53
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	97.5
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	97.48
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.48
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	97.46
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	97.45
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.45
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.44
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	97.43
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	97.42
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.41
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.4
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.4
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.39
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	97.39
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.38
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.37
PF00047	64	ig: Immunoglobulin domain The Prosite family only	97.31
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.26
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.26
PHA02982	251	hypothetical protein; Provisional	97.23
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.16
PHA02914	500	Immunoglobulin-like domain protein; Provisional	97.14
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.1
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.09
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	97.09
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.08
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	97.08
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	97.04
smart00407	75	IGc1 Immunoglobulin C-Type.	97.0
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	96.96
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	96.95
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.91
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	96.85
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	96.84
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.78
smart00409	86	IG Immunoglobulin.	96.76
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	96.76
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	96.71
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	96.68
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	96.57
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	96.55
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	96.48
PHA03042	286	CD47-like protein; Provisional	96.39
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	96.38
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	96.32
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	96.11
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.1
KOG4597|consensus	560		96.09
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	96.07
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	96.04
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	95.77
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	95.69
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	95.58
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	95.48
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	95.35
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	95.08
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	95.08
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	94.8
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	94.7
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	94.65
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	94.52
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	94.24
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	94.21
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	94.2
PHA03052	69	Hypothetical protein; Provisional	94.15
KOG1480|consensus	909		93.97
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	93.96
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	93.92
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	93.36
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	93.15
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	93.05
PHA02987	189	Ig domain OX-2-like protein; Provisional	92.97
PHA03270	466	envelope glycoprotein C; Provisional	92.76
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	92.15
PHA02865	338	MHC-like TNF binding protein; Provisional	92.13
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	91.87
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	91.54
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	91.3
PHA03271	490	envelope glycoprotein C; Provisional	91.29
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	91.25
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	89.92
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	89.32
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	89.16
PHA03269	566	envelope glycoprotein C; Provisional	88.4
PF11049	71	KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-assoc	87.07
PHA03273	486	envelope glycoprotein C; Provisional	86.39
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	83.07

>KOG3513|consensus

Probab=99.87  E-value=1.1e-20  Score=123.39  Aligned_cols=114  Identities=32%  Similarity=0.565  Sum_probs=100.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCc-cCCC-----CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGK-PVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDP   74 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~-~~~~-----~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~   74 (119)
                      +|+.|.|.|.+.|.|.|.|.|+|.+. .+..     .....|.|.+++.+|+|.|.|.+.|..+...+.+.+.+.   .+
T Consensus       255 ~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~---a~  331 (1051)
T KOG3513|consen  255 KGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVY---AP  331 (1051)
T ss_pred             CCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEe---cC
Confidence            48999999999999999999999776 3322     356789999999999999999999999888778887774   68


Q ss_pred             CeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      |.....+.+..+..|+.+.+.|.+.|.|.|.+.|++||.++..
T Consensus       332 P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~  374 (1051)
T KOG3513|consen  332 PYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEP  374 (1051)
T ss_pred             chhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCc
Confidence            8888888888899999999999999999999999999988874

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.78  E-value=1.5e-17  Score=94.93  Aligned_cols=108  Identities=16%  Similarity=0.336  Sum_probs=78.6

Q ss_pred             CCccEEEEEEeccC-----------CCCeeEEeeCCccC--C----------------CCCCCeEEEecCCCCCCeEEEE
Q psy12725          1 MLALKFFTCKYEGN-----------PVKTISWMKDGKPV--P----------------DHNEPVFRIDSVRKEDKGMYQC   51 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-----------~~~~v~w~~~~~~~--~----------------~~~~~~l~~~~~~~~d~g~y~C   51 (119)
                      .|++|.|.|.+.+.           ....+.|+|++...  .                ......|.|.+++..|+|.|.|
T Consensus        36 eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG~Y~C  115 (227)
T PHA02826         36 FGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEGIYIC  115 (227)
T ss_pred             CCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCEEEEE
Confidence            48999999998653           34589999987541  0                0124689999999999999999


Q ss_pred             EEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEcc-----CCCCeEEEEECCEEccc
Q psy12725         52 VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG-----NPTPEISWYLDGKKLVN  117 (119)
Q Consensus        52 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~~~~~W~~~~~~~~~  117 (119)
                      .+.+..+.....+.+.+.   .++      ....+.+|+.+.|.|.+.+     .|.|.+.|+|+|.++..
T Consensus       116 ~a~N~~~~~~~~i~L~V~---~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~  177 (227)
T PHA02826        116 TISSGNICEESTIRLTFD---SGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLY  177 (227)
T ss_pred             EEEECCcceEEEEEEEEe---cCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCC
Confidence            999976555555555442   111      1234568999999998753     35689999999998763

>KOG4221|consensus

Probab=99.77  E-value=1e-17  Score=110.54  Aligned_cols=114  Identities=23%  Similarity=0.531  Sum_probs=95.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFD   73 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~   73 (119)
                      .|+.+.|.|.+.+.|.|+|.|.||+..+...       ...+|.|.+++..|.|.|+|.+.|..........+.|.   .
T Consensus       251 ~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~---a  327 (1381)
T KOG4221|consen  251 EGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVL---A  327 (1381)
T ss_pred             cCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEE---c
Confidence            3899999999999999999999999877543       34678899999999999999999965555556666664   4


Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      +|.+...+......++..+.|.|.+.+.|.|.+.|+|||..+..
T Consensus       328 ~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ip  371 (1381)
T KOG4221|consen  328 PPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIP  371 (1381)
T ss_pred             CCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCc
Confidence            67777777777777899999999999999999999999987654

>KOG3513|consensus

Probab=99.76  E-value=2.6e-17  Score=108.03  Aligned_cols=113  Identities=28%  Similarity=0.556  Sum_probs=94.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC--------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeec
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN--------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRF   72 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~--------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~   72 (119)
                      +|+.+.|.|.+.|.|.|.|.|++|+.++....        ...|.|.+++..|+|.|.|.+.|..+....+..+.|..  
T Consensus       345 ~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a--  422 (1051)
T KOG3513|consen  345 TGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLA--  422 (1051)
T ss_pred             CCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEc--
Confidence            48899999999999999999999999886432        36899999999999999999999988877777777753  


Q ss_pred             CCCeeeecCCcc--ccCCCCcEEEEeEEccCCCCeEEEEECCEEc
Q psy12725         73 DPPVIKESFSDE--TLNPGPNYYFKCIASGNPTPEISWYLDGKKL  115 (119)
Q Consensus        73 ~~~~~~~~~~~~--~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~  115 (119)
                      .+|.+...+...  .+..|..+.+.|...+.|.|.+.|++++..+
T Consensus       423 ~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~  467 (1051)
T KOG3513|consen  423 SAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKL  467 (1051)
T ss_pred             cCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCccc
Confidence            456666655443  4668999999999999999999999987733

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.76  E-value=1.1e-17  Score=78.31  Aligned_cols=64  Identities=25%  Similarity=0.433  Sum_probs=54.9

Q ss_pred             EEEEEEeccCCCCeeEEeeCCccCCC-CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          5 KFFTCKYEGNPVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         5 ~~l~c~~~~~~~~~v~w~~~~~~~~~-~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      +.|.|.+.|.|.|.+.|||++..+.. .....|.|..+..+|.|.|+|.+.|..+.......+.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l   65 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL   65 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence            47999999999999999999998853 34568999999999999999999999887666666655

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>KOG4194|consensus

Probab=99.75  E-value=1.2e-17  Score=104.45  Aligned_cols=111  Identities=28%  Similarity=0.631  Sum_probs=93.0

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCcc-CCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeee
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKP-VPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGR   71 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~-~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~   71 (119)
                      |+.+.|.|.+.|.|.|.|.|-|+|.. ++..         ....+.|.+++.+|.|.|+|.+.+.+|.......++|.  
T Consensus       627 g~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~--  704 (873)
T KOG4194|consen  627 GQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVL--  704 (873)
T ss_pred             ccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEe--
Confidence            78899999999999999999998765 4432         34678899999999999999999998888777777775  


Q ss_pred             cCCCeeeecCCccccCCCCcEEEEeEEccCCC-CeEEEEECCEEc
Q psy12725         72 FDPPVIKESFSDETLNPGPNYYFKCIASGNPT-PEISWYLDGKKL  115 (119)
Q Consensus        72 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~~~~~  115 (119)
                       ..|.+..+..+..+..|+.+.+.|.+.+.|+ |.+.|+|+++++
T Consensus       705 -e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pi  748 (873)
T KOG4194|consen  705 -ETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPI  748 (873)
T ss_pred             -cCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCce
Confidence             3566666566667889999999999999987 899999987765

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.75  E-value=5.8e-17  Score=81.61  Aligned_cols=71  Identities=25%  Similarity=0.309  Sum_probs=61.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGR   71 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~   71 (119)
                      .|+.+.|.|.+.|.|.+.+.|+|++..+...         ..+.|.|..+..+|.|.|+|.+.|..+.......+.|...
T Consensus        14 ~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~   93 (98)
T cd05762          14 AGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDK   93 (98)
T ss_pred             CCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecC
Confidence            4899999999999999999999999877532         2467899999999999999999999998888888887643

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.74  E-value=3.4e-17  Score=78.57  Aligned_cols=67  Identities=27%  Similarity=0.454  Sum_probs=56.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      .|+.+.|.|.+.|.|.|.+.|+|++..+...      ....|.|.+++..|.|.|.|.+.|..+.......+.
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~   73 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT   73 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence            4899999999999999999999998876432      346799999999999999999999987766555543

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.74  E-value=1e-16  Score=79.26  Aligned_cols=69  Identities=17%  Similarity=0.302  Sum_probs=57.8

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCCC--------------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~--------------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      |+.+.|.|.+.+.|.+.+.|++++..+....              .+.|.|.++..+|.|.|+|.+.|..+.....+.+.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            7899999999999999999999987663211              14688889999999999999999998888777777


Q ss_pred             Eee
Q psy12725         68 LGG   70 (119)
Q Consensus        68 v~~   70 (119)
                      +..
T Consensus        81 V~~   83 (88)
T cd05735          81 VQE   83 (88)
T ss_pred             EeC
Confidence            754

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.74  E-value=8.9e-17  Score=77.49  Aligned_cols=67  Identities=24%  Similarity=0.514  Sum_probs=55.8

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC--------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      |+.+.|.|.+.|.|.|.++|++++..+...        ....|.|.+++.+|.|.|.|.+.|..+.......+.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            789999999999999999999999876432        2467999999999999999999998877655555443

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.74  E-value=5.2e-17  Score=82.02  Aligned_cols=69  Identities=16%  Similarity=0.287  Sum_probs=57.2

Q ss_pred             CCccEEEEEEecc-CCCCeeEEeeCCccCCCCC--------------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEee
Q psy12725          1 MLALKFFTCKYEG-NPVKTISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE   65 (119)
Q Consensus         1 ~g~~~~l~c~~~~-~~~~~v~w~~~~~~~~~~~--------------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~   65 (119)
                      +|+.+.|.|.+.+ .|.|.+.|+|++..+....              ...|.|..++.+|.|.|+|.+.|..+.....+.
T Consensus        17 ~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~   96 (101)
T cd04975          17 LGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFE   96 (101)
T ss_pred             CCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEE
Confidence            4899999999999 7899999999998875321              256899999999999999999999887666666


Q ss_pred             EEEe
Q psy12725         66 LKLG   69 (119)
Q Consensus        66 ~~v~   69 (119)
                      +.|.
T Consensus        97 L~V~  100 (101)
T cd04975          97 LYVN  100 (101)
T ss_pred             EEEE
Confidence            6553

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.73  E-value=1.3e-16  Score=78.90  Aligned_cols=68  Identities=26%  Similarity=0.460  Sum_probs=57.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.|.|.|.+.|+|++..+...     .+..|.|.+++.+|.|.|.|.+.|..+.......+.|
T Consensus        15 ~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   87 (88)
T cd05851          15 KGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYV   87 (88)
T ss_pred             CCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence            4899999999999999999999988766432     3457999999999999999999999887766666654

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.73  E-value=6.3e-17  Score=77.27  Aligned_cols=66  Identities=24%  Similarity=0.466  Sum_probs=55.5

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      |+.+.|.|.+.+.|.|.|.|+|++..+...      ...+|.|.+++.+|.|.|.|.+.|..+.......+.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   72 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLS   72 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence            789999999999999999999998765322      346899999999999999999999987776665554

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.73  E-value=6.9e-17  Score=81.65  Aligned_cols=69  Identities=22%  Similarity=0.438  Sum_probs=57.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE   65 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~   65 (119)
                      +|+.+.|.|.+.|.|.|.+.|+|++..+....               .+.|.|..++.+|.|.|+|.+.|..+.......
T Consensus        17 ~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~   96 (101)
T cd05859          17 LHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFA   96 (101)
T ss_pred             cCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEE
Confidence            47889999999999999999999998875321               257999999999999999999999877666666


Q ss_pred             EEEe
Q psy12725         66 LKLG   69 (119)
Q Consensus        66 ~~v~   69 (119)
                      +.|.
T Consensus        97 l~V~  100 (101)
T cd05859          97 LQIQ  100 (101)
T ss_pred             EEEE
Confidence            6653

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.72  E-value=6.6e-16  Score=92.71  Aligned_cols=115  Identities=21%  Similarity=0.373  Sum_probs=79.6

Q ss_pred             CccEEEEEEe-----ccCCCCeeEEeeCCccCCC----CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeE--e--eEEE
Q psy12725          2 LALKFFTCKY-----EGNPVKTISWMKDGKPVPD----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS--G--ELKL   68 (119)
Q Consensus         2 g~~~~l~c~~-----~~~~~~~v~w~~~~~~~~~----~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~--~--~~~v   68 (119)
                      |..+.+.|..     .+.+.+.++|+++......    .....|.|.+++.+|.|.|+|.+.+..+.....  .  .+.+
T Consensus       136 g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V  215 (326)
T PHA02785        136 RSTGEMVCPNINAFIASNVNADIIWSGHRRLRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEV  215 (326)
T ss_pred             cCcEEEECCChhhcccCCCCceEEEccCCccCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEE
Confidence            6778899972     3457889999986532111    124679999999999999999999976543322  2  2333


Q ss_pred             eeecCCCeeeecCCccccCCCCcEEEEeEEccCCCC---eEEEEECCEEccc
Q psy12725         69 GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP---EISWYLDGKKLVN  117 (119)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~~~~~~~  117 (119)
                      .....+|.+. .+....+..|+.+.|.|.+.+.|.+   .+.|++||..+..
T Consensus       216 ~~~~~pp~~~-~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~  266 (326)
T PHA02785        216 RDRIIPPTMQ-LPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEE  266 (326)
T ss_pred             eccCCCceec-CCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCC
Confidence            2222344433 2344456779999999999988764   7999999998753

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.71  E-value=2.1e-16  Score=76.12  Aligned_cols=67  Identities=24%  Similarity=0.445  Sum_probs=56.0

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC--------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      |+.+.|.|.+.|.|.|.|+|+|+++.+...        ....|.+..++..|.|.|.|.+.|..+.......+.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            789999999999999999999999876421        2357888999999999999999999877766665554

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.71  E-value=1.7e-16  Score=76.04  Aligned_cols=63  Identities=25%  Similarity=0.398  Sum_probs=51.7

Q ss_pred             EEEEEEeccCCCCeeEEeeCCccCCCC---------CC--CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          5 KFFTCKYEGNPVKTISWMKDGKPVPDH---------NE--PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~--~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      |.|.|.+.|.|.|.|.|+|++..+...         ..  .+|.|.++..+|.|.|.|.+.|..+.......+.
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~   74 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD   74 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence            579999999999999999999877531         11  2699999999999999999999988766655544

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.70  E-value=4.8e-16  Score=76.53  Aligned_cols=67  Identities=22%  Similarity=0.381  Sum_probs=56.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC----------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      .|+.+.|.|.+.|.|.|.+.|++++..+...          ....|.|..+..+|.|.|.|.+.|..+.....+.+.
T Consensus         9 ~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~   85 (86)
T cd05894           9 AGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVK   85 (86)
T ss_pred             cCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEE
Confidence            4899999999999999999999999877532          125799999999999999999999988766555543

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.69  E-value=3.3e-16  Score=74.10  Aligned_cols=64  Identities=23%  Similarity=0.404  Sum_probs=53.2

Q ss_pred             EEEEEEeccCCCCeeEEeeCCccCCCC----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          5 KFFTCKYEGNPVKTISWMKDGKPVPDH----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      +.|.|.+.|.|.|.+.|||+++.+...    ....|.|..+..+|.|.|+|.+.|..+.......+.+
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            468999999999999999999887542    2457999999999999999999999876665555554

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.69  E-value=6.1e-16  Score=74.57  Aligned_cols=67  Identities=24%  Similarity=0.439  Sum_probs=55.9

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC--------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      |+.+.|.|.+.+.|.|.+.|++++..+...        ....|.|..++.+|.|.|.|.+.|..+.......+.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            789999999999999999999998766432        3478999999999999999999999877665555543

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.69  E-value=4e-16  Score=74.21  Aligned_cols=65  Identities=26%  Similarity=0.431  Sum_probs=54.3

Q ss_pred             EEEEEEeccCCCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          5 KFFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      |.|.|.+.|.|.|.+.|+|++..+...     ....|.|.++..+|+|.|+|.+.|..+.......+.+.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            468999999999999999999887532     45789999999999999999999988776666666553

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.69  E-value=4.9e-16  Score=74.34  Aligned_cols=66  Identities=29%  Similarity=0.453  Sum_probs=55.5

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      |+.+.|.|.+.+.|.+.+.|++++..+...      ....|.|.+++..|.|.|.|.+.|..+.......+.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   72 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS   72 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence            788999999999999999999998776432      346799999999999999999999987766655554

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.68  E-value=1.3e-15  Score=76.38  Aligned_cols=69  Identities=28%  Similarity=0.487  Sum_probs=58.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC--------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.|.|.+.+.|++++..+...        ....|.|..++.+|.|.|.|.+.|..+.......+.|.
T Consensus        17 ~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~   93 (95)
T cd05730          17 LGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVF   93 (95)
T ss_pred             CCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEE
Confidence            4899999999999999999999998776432        24579999999999999999999998877666666653

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.68  E-value=4e-16  Score=74.83  Aligned_cols=63  Identities=24%  Similarity=0.469  Sum_probs=51.4

Q ss_pred             EEEEEEeccCCCCeeEEeeCCccCCCCC-------C----CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          5 KFFTCKYEGNPVKTISWMKDGKPVPDHN-------E----PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~~-------~----~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      |.|.|.+.|.|.|.+.|+|++..+....       .    ..|.|..++.+|+|.|.|.+.|..+.......+.
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~   74 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD   74 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence            5799999999999999999988764321       1    1588999999999999999999987776655544

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.68  E-value=1.7e-15  Score=90.96  Aligned_cols=110  Identities=21%  Similarity=0.285  Sum_probs=79.0

Q ss_pred             CccEEEEEEe-----ccCCCCeeEEeeCCccC----CCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeec
Q psy12725          2 LALKFFTCKY-----EGNPVKTISWMKDGKPV----PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRF   72 (119)
Q Consensus         2 g~~~~l~c~~-----~~~~~~~v~w~~~~~~~----~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~   72 (119)
                      |+.+.|.|.+     .|.|.+.+.|+|++...    ....+..+.+..+..+|+|.|+|.+.|..+....+..+.|... 
T Consensus        41 ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~-  119 (326)
T PHA02785         41 NEPVILPCPQINTLSSGYNILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSV-  119 (326)
T ss_pred             CCCEEEECCCccccccCCCCceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEec-
Confidence            7899999987     57788899999987532    1223456888899999999999999998766556666666442 


Q ss_pred             CCCeeeecCCccccCCCCcEEEEeEE-----ccCCCCeEEEEECC
Q psy12725         73 DPPVIKESFSDETLNPGPNYYFKCIA-----SGNPTPEISWYLDG  112 (119)
Q Consensus        73 ~~~~~~~~~~~~~~~~g~~~~l~C~~-----~~~p~~~~~W~~~~  112 (119)
                      .++.+...+....+.+|....+.|..     .+.|.+.+.|+++.
T Consensus       120 ~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~  164 (326)
T PHA02785        120 SESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR  164 (326)
T ss_pred             CCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCC
Confidence            22333222233345688899999962     35678899998865

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.68  E-value=1.6e-15  Score=75.04  Aligned_cols=68  Identities=26%  Similarity=0.479  Sum_probs=56.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...     ....|.|.+++.+|+|.|.|.+.|..+.......+.|
T Consensus        15 ~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   87 (88)
T cd04968          15 KGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV   87 (88)
T ss_pred             CCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence            4899999999999999999999987655332     4578999999999999999999999887666665554

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.68  E-value=1.1e-15  Score=73.87  Aligned_cols=65  Identities=29%  Similarity=0.629  Sum_probs=52.3

Q ss_pred             EEEEEEeccCCCCeeEEeeCCccCCCC--------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          5 KFFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      |+|.|.+.|.|.|.+.|+|++..+...        ....|.|..+..+|.|.|.|.+.|..+....+..+++.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~   73 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS   73 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence            579999999999999999999877432        23579999999999999999999988765444444443

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.67  E-value=1.6e-15  Score=74.63  Aligned_cols=67  Identities=33%  Similarity=0.560  Sum_probs=54.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC----------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~----------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      .|+.+.|.|.+.+.|.+.+.|+|++..+....          ...|.|..+..+|.|.|.|.+.|..+.......+.
T Consensus         8 ~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   84 (85)
T cd05857           8 AANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD   84 (85)
T ss_pred             CCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEE
Confidence            38899999999999999999999988764321          23588889999999999999999987766555543

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.67  E-value=1.5e-15  Score=72.22  Aligned_cols=64  Identities=33%  Similarity=0.637  Sum_probs=52.0

Q ss_pred             cEEEEEEeccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          4 LKFFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         4 ~~~l~c~~~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      .+.|.|.+.|.|.|.++|+|++..+...      ....+.+..++.+|.|.|.|.+.|..+.......+.
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~   70 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI   70 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence            3789999999999999999998766432      234678889999999999999999987766555543

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.66  E-value=1.6e-15  Score=75.64  Aligned_cols=67  Identities=22%  Similarity=0.379  Sum_probs=54.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC----------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      .|+.+.|.|.+.+.|.|.+.|+|++..+...          ....|.|.+++.+|.|.|.|.+.|..+.......+.
T Consensus        15 ~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   91 (92)
T cd05737          15 EGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVS   91 (92)
T ss_pred             CCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEe
Confidence            3899999999999999999999998776432          123689999999999999999999887665555443

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.66  E-value=1.4e-15  Score=74.77  Aligned_cols=67  Identities=34%  Similarity=0.640  Sum_probs=56.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      .|+.+.|.|.+.|.|.+.+.|++++..+...     ....|.|..+..+|.|.|.|.+.|..+....+..+.
T Consensus        13 ~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   84 (85)
T cd05728          13 IGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELA   84 (85)
T ss_pred             CCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEE
Confidence            4899999999999999999999999877532     346899999999999999999999987665555443

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.66  E-value=4.2e-15  Score=74.49  Aligned_cols=68  Identities=29%  Similarity=0.640  Sum_probs=53.5

Q ss_pred             CCccEEEEEEeccCCC-CeeEEee-CCccCCC-C----------CCCeEEEecCCCCCCeEEEEEEEcCC-CCceeEeeE
Q psy12725          1 MLALKFFTCKYEGNPV-KTISWMK-DGKPVPD-H----------NEPVFRIDSVRKEDKGMYQCVIRNEQ-ESAQASGEL   66 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~-~~v~w~~-~~~~~~~-~----------~~~~l~~~~~~~~d~g~y~C~~~~~~-~~~~~~~~~   66 (119)
                      +|+.+.|.|.+.|.|. +.+.|++ ++..+.. .          ....|.|..++.+|.|.|+|.+.|.. +....+..+
T Consensus        14 ~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l   93 (96)
T cd05865          14 VGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNV   93 (96)
T ss_pred             CCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEE
Confidence            4899999999999985 6999998 6665432 1          12579999999999999999999986 666666655


Q ss_pred             EE
Q psy12725         67 KL   68 (119)
Q Consensus        67 ~v   68 (119)
                      .+
T Consensus        94 ~v   95 (96)
T cd05865          94 KI   95 (96)
T ss_pred             EE
Confidence            44

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.65  E-value=2.8e-15  Score=71.29  Aligned_cols=64  Identities=25%  Similarity=0.516  Sum_probs=52.6

Q ss_pred             EEEEEEeccCCCCeeEEeeCCccCCC------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          5 KFFTCKYEGNPVKTISWMKDGKPVPD------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         5 ~~l~c~~~~~~~~~v~w~~~~~~~~~------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      +.|.|.+.|.|.|.+.|+|++..+..      .....|.|.+++..|.|.|.|.+.|..+.......+.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            46899999999999999998876533      23568999999999999999999999887666555543

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.65  E-value=4e-15  Score=73.93  Aligned_cols=67  Identities=18%  Similarity=0.332  Sum_probs=55.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      .|+.+.|.|.+.|.|.|.+.|++++..+...         ....|.|.+++.+|.|.|.|.+.|..+.......+.
T Consensus        14 ~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~   89 (90)
T cd04972          14 EGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVT   89 (90)
T ss_pred             CCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence            4899999999999999999999998766332         124689999999999999999999987765555443

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.64  E-value=4.3e-15  Score=74.79  Aligned_cols=66  Identities=20%  Similarity=0.414  Sum_probs=53.2

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC--------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      |+.+.|.|.+.|.|.|.++|++++..+...              ....|.|.+++.+|.|.|.|.+.|..+.......+.
T Consensus        17 g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   96 (97)
T cd05869          17 EEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLE   96 (97)
T ss_pred             CCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEE
Confidence            789999999999999999999987654321              114688999999999999999999988766555443

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.64  E-value=4.3e-15  Score=71.38  Aligned_cols=63  Identities=22%  Similarity=0.370  Sum_probs=51.2

Q ss_pred             EEEEEEeccCCCCeeEEeeCCccCCCCC-----------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          5 KFFTCKYEGNPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~~-----------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      +.|.|.+.|.|.|.+.|+|++..+....           ...|.|..++.+|.|.|.|.+.|..+.......+.
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   74 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD   74 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence            5799999999999999999998775321           12589999999999999999999987766555543

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.64  E-value=7.7e-15  Score=72.09  Aligned_cols=67  Identities=22%  Similarity=0.345  Sum_probs=55.1

Q ss_pred             ccEEEEEEeccCCCC--eeEEeeCCccCCCC-------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          3 ALKFFTCKYEGNPVK--TISWMKDGKPVPDH-------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         3 ~~~~l~c~~~~~~~~--~v~w~~~~~~~~~~-------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      +.+.|.|.+.+.|.+  .+.|++++..+...             ....|.|.+++..|.|.|+|.+.+..+.......+.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            468999999999876  68999998776431             125789999999999999999999988877777777


Q ss_pred             Ee
Q psy12725         68 LG   69 (119)
Q Consensus        68 v~   69 (119)
                      |.
T Consensus        81 V~   82 (85)
T cd05854          81 VR   82 (85)
T ss_pred             EE
Confidence            64

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.64  E-value=3.1e-15  Score=73.05  Aligned_cols=66  Identities=26%  Similarity=0.536  Sum_probs=53.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL   66 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~   66 (119)
                      +|+.+.|.|.+.+.|.+.+.|++++..+...       ....|.|..++.+|.|.|.|.+.|..+.......+
T Consensus         8 ~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v   80 (82)
T cd05856           8 VGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV   80 (82)
T ss_pred             CCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence            4899999999999999999999998766432       23578999999999999999999987765444433

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.64  E-value=2.3e-15  Score=71.26  Aligned_cols=61  Identities=36%  Similarity=0.573  Sum_probs=50.8

Q ss_pred             EEEEEEeccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEee
Q psy12725          5 KFFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE   65 (119)
Q Consensus         5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~   65 (119)
                      |.|.|.+.|.|.|.+.|+|++..+...      ....|.|..++.+|.|.|.|.+.|..+....+..
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   67 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMV   67 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEE
Confidence            579999999999999999998766432      3568999999999999999999999877655444

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.64  E-value=6.4e-15  Score=69.60  Aligned_cols=62  Identities=21%  Similarity=0.443  Sum_probs=48.8

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEee
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE   65 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~   65 (119)
                      |+.+.|.|.+.|.|.|.|.|+|++..+...     ....|.|.++  .|.|.|+|.+.|..+.......
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~   67 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAISSLGMIEATAQ   67 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEecc--ccCeeEEEEEEeCCCEEEEEEE
Confidence            788999999999999999999998776432     2345777765  4789999999999876554443

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.64  E-value=3.3e-15  Score=72.31  Aligned_cols=61  Identities=28%  Similarity=0.439  Sum_probs=50.7

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCcee
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA   62 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~   62 (119)
                      |+.+.|.|.+.+.|.|.+.|++++..+...         ....|.|.+++.+|.|.|.|.+.|..+....
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   70 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFG   70 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEe
Confidence            789999999999999999999987665432         1257999999999999999999998765443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.64  E-value=6.3e-15  Score=70.68  Aligned_cols=64  Identities=25%  Similarity=0.461  Sum_probs=52.4

Q ss_pred             cEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          4 LKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         4 ~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      .+.|.|.+.|.|.|.+.|+|++..+...         ....|.|.++..+|.|.|.|.+.|..+.......+.
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   73 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVK   73 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEE
Confidence            4789999999999999999998876322         235799999999999999999999987765555443

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.64  E-value=4.2e-15  Score=72.29  Aligned_cols=61  Identities=21%  Similarity=0.398  Sum_probs=50.3

Q ss_pred             EEEEeccCCCCeeEEeeCCccCCCCC----------------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          7 FTCKYEGNPVKTISWMKDGKPVPDHN----------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         7 l~c~~~~~~~~~v~w~~~~~~~~~~~----------------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      +.|.+.|.|.|.|+|+|++..+....                ...|.|..+...|.|.|+|.+.|..+.....+.+.
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            68999999999999999998775321                23589999999999999999999988776666554

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.64  E-value=4.6e-15  Score=70.21  Aligned_cols=62  Identities=31%  Similarity=0.607  Sum_probs=50.8

Q ss_pred             EEEEEEeccCCCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeE
Q psy12725          5 KFFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL   66 (119)
Q Consensus         5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~   66 (119)
                      |.|.|.+.|.|.|.+.|+|++..+...     ....|.|.+++.+|.|.|+|.+.|..+.......+
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   67 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASL   67 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEE
Confidence            579999999999999999987655332     35689999999999999999999988766555444

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.63  E-value=6.6e-15  Score=73.14  Aligned_cols=69  Identities=26%  Similarity=0.410  Sum_probs=56.2

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCC--------C------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVP--------D------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~--------~------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      |+.+.|.|.+.+.|.+.+.|++++....        .      .....|.|.+++.+|+|.|+|.+.|..+.......+.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE   80 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence            7899999999999999999999875421        0      1245799999999999999999999988777677666


Q ss_pred             Eee
Q psy12725         68 LGG   70 (119)
Q Consensus        68 v~~   70 (119)
                      |..
T Consensus        81 V~~   83 (90)
T cd05726          81 VTD   83 (90)
T ss_pred             Eee
Confidence            653

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.63  E-value=7.7e-15  Score=72.89  Aligned_cols=67  Identities=22%  Similarity=0.349  Sum_probs=52.4

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCC----ccCCC------------------CCCCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDG----KPVPD------------------HNEPVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~----~~~~~------------------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      |+.+.|.|.+.+.|.|.|+|+|++    ..+..                  .....|.|.+++.+|+|.|.|.+.|..+.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            789999999999999999999953    21110                  01246889999999999999999999887


Q ss_pred             ceeEeeEEE
Q psy12725         60 AQASGELKL   68 (119)
Q Consensus        60 ~~~~~~~~v   68 (119)
                      ...+..+.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            666665554

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>KOG4221|consensus

Probab=99.63  E-value=3.6e-14  Score=94.34  Aligned_cols=118  Identities=25%  Similarity=0.554  Sum_probs=88.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC------CCeEEEecCCCCCCeEEEEEEEcCCCCce-eEeeEEEeeec-
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCVIRNEQESAQ-ASGELKLGGRF-   72 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~-~~~~~~v~~~~-   72 (119)
                      +|+++.|.|.+.+.+.+.+.|.++..++....      ...|.|..+...|.|.|.|.+.+...... ....+++.... 
T Consensus       154 ~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~  233 (1381)
T KOG4221|consen  154 YGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPG  233 (1381)
T ss_pred             cCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcc
Confidence            48999999999998888999999988765443      46789999999999999999998754332 22334433100 


Q ss_pred             --CCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcccC
Q psy12725         73 --DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  118 (119)
Q Consensus        73 --~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~  118 (119)
                        ....+...+....+.+|+.+.|.|.+.+.|.|.+.|.+||..+..+
T Consensus       234 ~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~d  281 (1381)
T KOG4221|consen  234 ALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVD  281 (1381)
T ss_pred             cccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeec
Confidence              0112333444556789999999999999999999999999987643

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.63  E-value=7.7e-15  Score=70.75  Aligned_cols=61  Identities=20%  Similarity=0.450  Sum_probs=49.8

Q ss_pred             EEEEeccCCCCeeEEeeCCccCCCCC--------------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          7 FTCKYEGNPVKTISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         7 l~c~~~~~~~~~v~w~~~~~~~~~~~--------------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      +.|.+.|.|.|.++|||++..+....              ...|.|..+..+|.|.|+|.+.|..+.....+.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            67899999999999999998875321              13688999999999999999999988766555443

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.62  E-value=6.1e-15  Score=69.95  Aligned_cols=64  Identities=25%  Similarity=0.408  Sum_probs=50.4

Q ss_pred             EEEEEEeccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          5 KFFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      +.|.|.+.|.|.|.+.|+|++..+...      .+.+|.|.++..+|+|.|+|.+.+..........+++
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence            368999999999999999999876432      2458999999999999999999997544444444443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.62  E-value=2e-14  Score=71.46  Aligned_cols=59  Identities=25%  Similarity=0.473  Sum_probs=50.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      .|+.+.|.|.+.+. .+.+.|++++..+...      ....|.|.+++.+|.|.|.|.+.|..+..
T Consensus        17 ~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   81 (91)
T cd05740          17 DNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNM   81 (91)
T ss_pred             cCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCE
Confidence            38999999999998 8999999998776432      34689999999999999999999998654

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.62  E-value=1.2e-14  Score=69.85  Aligned_cols=64  Identities=34%  Similarity=0.643  Sum_probs=50.3

Q ss_pred             EEEEEEeccCCCCeeEEeeCCccC-CC---------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          5 KFFTCKYEGNPVKTISWMKDGKPV-PD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         5 ~~l~c~~~~~~~~~v~w~~~~~~~-~~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      +.|.|.+.|.|.|.++|+|++... ..         .....|.|.+++.+|.|.|.|.+.|..+.......+.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            478999999999999999987532 11         13457899999999999999999998876655555543

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.62  E-value=1.7e-14  Score=70.92  Aligned_cols=67  Identities=21%  Similarity=0.395  Sum_probs=53.9

Q ss_pred             ccEEEEEEeccCCCC--eeEEeeCCccCCCC-------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          3 ALKFFTCKYEGNPVK--TISWMKDGKPVPDH-------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         3 ~~~~l~c~~~~~~~~--~v~w~~~~~~~~~~-------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      +.+.|.|.+.+.|.+  .+.|++++..+...             ....|.|.+++..|+|.|.|.+.|..+.......+.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            468999999998876  67999998766421             245799999999999999999999887766666666


Q ss_pred             Ee
Q psy12725         68 LG   69 (119)
Q Consensus        68 v~   69 (119)
                      |.
T Consensus        81 V~   82 (85)
T cd04970          81 VR   82 (85)
T ss_pred             EE
Confidence            64

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.62  E-value=1.5e-14  Score=72.14  Aligned_cols=65  Identities=26%  Similarity=0.551  Sum_probs=53.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE   65 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~   65 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...         ....|.|.++..+|+|.|.|.+.|..+.......
T Consensus        17 ~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   90 (92)
T cd05747          17 EGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFT   90 (92)
T ss_pred             CCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEE
Confidence            4899999999999999999999998766432         1357899999999999999999998876655444

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>KOG4194|consensus

Probab=99.61  E-value=1.3e-14  Score=91.21  Aligned_cols=111  Identities=31%  Similarity=0.547  Sum_probs=89.2

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeCCccCCCC----------------------CCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKDGKPVPDH----------------------NEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~~~~~~~~----------------------~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      +|+.++|+|.+.+.  ..-++.|.++++..+..                      ...-|.+.+++..|+|.|.|++.|.
T Consensus       517 ~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~  596 (873)
T KOG4194|consen  517 IGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNH  596 (873)
T ss_pred             hccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecc
Confidence            48899999999773  34589999877644220                      1245889999999999999999998


Q ss_pred             CCC-ceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEE
Q psy12725         57 QES-AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK  114 (119)
Q Consensus        57 ~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~  114 (119)
                      +|. +.....++|.   ..|.+...|.+..+..|+-..|.|.+.|.|.|.+.|.|+|..
T Consensus       597 FGStysqk~KltV~---~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggt  652 (873)
T KOG4194|consen  597 FGSTYSQKAKLTVN---QAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGT  652 (873)
T ss_pred             cCcchhheeEEEee---ccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCC
Confidence            765 4445566664   478888889999999999999999999999999999998764

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.61  E-value=1.3e-14  Score=72.13  Aligned_cols=67  Identities=25%  Similarity=0.392  Sum_probs=52.1

Q ss_pred             CccEEEEEEeccCCCCeeEEeeC----CccCCCC------------------CCCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKD----GKPVPDH------------------NEPVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~----~~~~~~~------------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      |+.+.|.|.+.+.|.|.+.|+++    +..+...                  ....|.|.+++.+|+|.|.|.+.|..+.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            78999999999999999999984    2221110                  1147999999999999999999999887


Q ss_pred             ceeEeeEEE
Q psy12725         60 AQASGELKL   68 (119)
Q Consensus        60 ~~~~~~~~v   68 (119)
                      ......+.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            666655544

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.61  E-value=9.8e-15  Score=72.93  Aligned_cols=67  Identities=22%  Similarity=0.367  Sum_probs=53.5

Q ss_pred             CCccEEEEEEecc-----CCCCeeEEeeCCccCCC---------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeE
Q psy12725          1 MLALKFFTCKYEG-----NPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL   66 (119)
Q Consensus         1 ~g~~~~l~c~~~~-----~~~~~v~w~~~~~~~~~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~   66 (119)
                      .|+.+.|.|.+.+     .|.+.|.|||++..+..         ..+..|.|..+..+|+|.|.|.+.|..+.....+.+
T Consensus        13 ~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L   92 (94)
T cd05756          13 EGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKVSISL   92 (94)
T ss_pred             cCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEEEEEEE
Confidence            4899999999988     57889999999865421         124678999999999999999999987766555544


Q ss_pred             E
Q psy12725         67 K   67 (119)
Q Consensus        67 ~   67 (119)
                      .
T Consensus        93 ~   93 (94)
T cd05756          93 T   93 (94)
T ss_pred             E
Confidence            3

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.61  E-value=1.7e-14  Score=69.14  Aligned_cols=65  Identities=28%  Similarity=0.519  Sum_probs=51.9

Q ss_pred             CccEEEEEEeccCCCCeeEEee-CCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMK-DGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL   66 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~-~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~   66 (119)
                      |+.+.|.|.+.+.|.+.+.|++ ++..+...      ....|.|..+..+|.|.|.|.+.|..+.......+
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   72 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVEL   72 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence            7899999999999999999997 55544321      34678999999999999999999998765544443

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.61  E-value=2.5e-14  Score=73.40  Aligned_cols=68  Identities=21%  Similarity=0.354  Sum_probs=55.1

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCCC--------------CCeEEEecCC-CCCCeEEEEEEEcCCCCceeEeeE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDHN--------------EPVFRIDSVR-KEDKGMYQCVIRNEQESAQASGEL   66 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~--------------~~~l~~~~~~-~~d~g~y~C~~~~~~~~~~~~~~~   66 (119)
                      |..+.|.|.+.|.|.+.+.|++++..+....              ...|.|..+. .+|.|.|.|.+.|..+.....+.+
T Consensus        23 g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L  102 (109)
T cd05773          23 SSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQL  102 (109)
T ss_pred             CCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEE
Confidence            5789999999999999999999988764211              2468888887 589999999999998887666666


Q ss_pred             EEe
Q psy12725         67 KLG   69 (119)
Q Consensus        67 ~v~   69 (119)
                      .+.
T Consensus       103 ~~~  105 (109)
T cd05773         103 VST  105 (109)
T ss_pred             Eec
Confidence            654

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.61  E-value=1e-14  Score=69.37  Aligned_cols=64  Identities=33%  Similarity=0.613  Sum_probs=51.4

Q ss_pred             EEEEEEeccCCCCeeEEeeCCccCCC------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          5 KFFTCKYEGNPVKTISWMKDGKPVPD------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         5 ~~l~c~~~~~~~~~v~w~~~~~~~~~------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      +.|.|.+.|.|.|.+.|++++..+..      .....|.|.+++.+|.|.|.|.+.|..+.....+.+.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            47899999999999999998876532      13468999999999999999999999876655554443

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.60  E-value=1.7e-14  Score=71.89  Aligned_cols=66  Identities=21%  Similarity=0.342  Sum_probs=53.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC----------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL   66 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~----------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~   66 (119)
                      .|+.+.|.|.+.+.|.+.+.||+++..+....          ...|.|..++.+|+|.|.|.+.|..+.....+.+
T Consensus        15 eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v   90 (92)
T cd05891          15 EGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTV   90 (92)
T ss_pred             CCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEE
Confidence            38999999999999999999999887653321          1368999999999999999999987766555444

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.60  E-value=2e-14  Score=72.52  Aligned_cols=66  Identities=29%  Similarity=0.548  Sum_probs=51.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCCC--------------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVPD--------------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG   64 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~~--------------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~   64 (119)
                      .|+.+.|.|.+.|.|.|.+.|++.  +..+..              .....|.|.+++.+|.|.|.|.+.|..+....++
T Consensus        15 ~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   94 (98)
T cd05870          15 ENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSM   94 (98)
T ss_pred             CCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEE
Confidence            389999999999999999999994  332211              0135789999999999999999999987665554


Q ss_pred             eE
Q psy12725         65 EL   66 (119)
Q Consensus        65 ~~   66 (119)
                      .+
T Consensus        95 ~l   96 (98)
T cd05870          95 YL   96 (98)
T ss_pred             EE
Confidence            44

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.60  E-value=3.3e-14  Score=71.44  Aligned_cols=67  Identities=25%  Similarity=0.470  Sum_probs=53.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC--------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL   66 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~   66 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...              ....|.|.+++.+|.|.|.|.+.|..+....++.+
T Consensus        15 ~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l   94 (96)
T cd05732          15 ELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYL   94 (96)
T ss_pred             cCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEE
Confidence            3889999999999999999999987544321              12478999999999999999999998876555544


Q ss_pred             E
Q psy12725         67 K   67 (119)
Q Consensus        67 ~   67 (119)
                      .
T Consensus        95 ~   95 (96)
T cd05732          95 E   95 (96)
T ss_pred             e
Confidence            3

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.60  E-value=2.8e-14  Score=69.73  Aligned_cols=67  Identities=15%  Similarity=0.344  Sum_probs=55.3

Q ss_pred             ccEEEEEEeccCC--CCeeEEeeCCccCCCC-------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          3 ALKFFTCKYEGNP--VKTISWMKDGKPVPDH-------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         3 ~~~~l~c~~~~~~--~~~v~w~~~~~~~~~~-------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      +.+.|.|.+...+  .+.+.|++|++.+...             ....|.|.+++.+|.|.|+|.+.+.......+..+.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            4689999997744  6789999999888531             234799999999999999999999988877777777


Q ss_pred             Ee
Q psy12725         68 LG   69 (119)
Q Consensus        68 v~   69 (119)
                      |.
T Consensus        81 V~   82 (85)
T cd05853          81 VR   82 (85)
T ss_pred             Ee
Confidence            75

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.59  E-value=1.8e-14  Score=70.23  Aligned_cols=66  Identities=26%  Similarity=0.408  Sum_probs=51.4

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCc---cC--CC---------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGK---PV--PD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~---~~--~~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      |+.+.|.|.+.+.|.|.+.|+|+..   .+  ..         .....|.|..++.+|.|.|.|.+.|..+.....+.+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            7899999999999999999999632   11  10         1235789999999999999999999987665555443

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.59  E-value=4.9e-14  Score=68.37  Aligned_cols=63  Identities=24%  Similarity=0.453  Sum_probs=50.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG   64 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~   64 (119)
                      .|+.+.|.|.+.+. .+.+.|+|++..+...     ....|.|..+..+|+|.|.|.+.+..+......
T Consensus         8 ~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~   75 (79)
T cd04973           8 PGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYF   75 (79)
T ss_pred             CCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence            48999999999885 5689999999877542     235689999999999999999998865544333

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.58  E-value=1.4e-14  Score=71.91  Aligned_cols=67  Identities=33%  Similarity=0.615  Sum_probs=55.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...         ....|.|.++..+|.|.|.|.+.+..+.......+.
T Consensus        14 ~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~   89 (90)
T PF07679_consen   14 EGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLT   89 (90)
T ss_dssp             TTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEE
Confidence            4899999999999999999999998877542         346799999999999999999999876555555443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.58  E-value=3.4e-14  Score=71.06  Aligned_cols=59  Identities=27%  Similarity=0.535  Sum_probs=48.7

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC-------CCCeEEEecCC-CCCCeEEEEEEEcCCCCc
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVR-KEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~-~~d~g~y~C~~~~~~~~~   60 (119)
                      |+.+.|.|.+.|.|.|.|+|+|++..+...       ....|.|..+. ..|.|.|.|.+.|..+..
T Consensus        19 g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~   85 (94)
T cd05848          19 EKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSI   85 (94)
T ss_pred             CCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeE
Confidence            678999999999999999999999877432       23567787774 699999999999987654

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.57  E-value=4.5e-14  Score=67.65  Aligned_cols=55  Identities=31%  Similarity=0.617  Sum_probs=46.6

Q ss_pred             EEEEEEeccCCCCeeEEeeCCccCCC--------CCCCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          5 KFFTCKYEGNPVKTISWMKDGKPVPD--------HNEPVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         5 ~~l~c~~~~~~~~~v~w~~~~~~~~~--------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      ++|.|.+.|.|.|.+.|+|++..+..        .....|.|.+++.+|.|.|.|.+.|..+.
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~   63 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGT   63 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCc
Confidence            47999999999999999999876642        12457899999999999999999998765

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.56  E-value=1.4e-13  Score=66.30  Aligned_cols=64  Identities=30%  Similarity=0.629  Sum_probs=52.6

Q ss_pred             EEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          5 KFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      +.|.|.+.|.|.+.+.|+|++..+...         ....|.|..+..+|.|.|.|.+.|..+.......+.|
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV   73 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence            468999999999999999998776432         2357899999999999999999999877766666655

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.55  E-value=1.7e-13  Score=68.52  Aligned_cols=60  Identities=20%  Similarity=0.352  Sum_probs=48.5

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCCC-------CCeEEEecCC-CCCCeEEEEEEEcCCCCce
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDHN-------EPVFRIDSVR-KEDKGMYQCVIRNEQESAQ   61 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~-------~~~l~~~~~~-~~d~g~y~C~~~~~~~~~~   61 (119)
                      |+.+.|.|.+.+.|.+.++|++++..+....       ...|.|..+. ..|.|.|.|.+.|..+...
T Consensus        19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~   86 (94)
T cd05850          19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVV   86 (94)
T ss_pred             CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEE
Confidence            5689999999999999999999998875321       3467776654 5899999999999887543

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>KOG4222|consensus

Probab=99.54  E-value=3.3e-14  Score=94.04  Aligned_cols=111  Identities=31%  Similarity=0.605  Sum_probs=96.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDP   74 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~   74 (119)
                      +|+.++|.|.+.|.|.+.+.|-+++..++..      ...++.|..++..|+|.|.|.+.+..+..+.+..++|.   .+
T Consensus       239 ~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~---ap  315 (1281)
T KOG4222|consen  239 VGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQ---AP  315 (1281)
T ss_pred             cccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEe---cC
Confidence            3778899999999999999999877666532      34778888999999999999999999888888888885   57


Q ss_pred             CeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEE
Q psy12725         75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK  114 (119)
Q Consensus        75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~  114 (119)
                      |.+...+.+..+..|..++|.|.+.+.|.|.+.|.+.|..
T Consensus       316 P~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q  355 (1281)
T KOG4222|consen  316 PSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQ  355 (1281)
T ss_pred             cccccccCccccccCceEEeeeecCCCCCcceEEeccCcc
Confidence            8888888888888999999999999999999999987653

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.54  E-value=1.1e-13  Score=66.42  Aligned_cols=59  Identities=24%  Similarity=0.545  Sum_probs=48.0

Q ss_pred             EEEEEEecc-CCCCeeEEeeCCccCCCC------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeE
Q psy12725          5 KFFTCKYEG-NPVKTISWMKDGKPVPDH------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS   63 (119)
Q Consensus         5 ~~l~c~~~~-~~~~~v~w~~~~~~~~~~------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~   63 (119)
                      +.|.|.+.+ .|.+.+.|+|++..+...            ....|.|..++.+|.|.|.|.+.|..+.....
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   72 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVT   72 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEE
Confidence            368999999 899999999998776432            12468999999999999999999988765443

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.53  E-value=2e-13  Score=66.34  Aligned_cols=58  Identities=21%  Similarity=0.459  Sum_probs=47.6

Q ss_pred             CCccEEEEEEeccCCCC-eeEEeeCCccCCC---CCCCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          1 MLALKFFTCKYEGNPVK-TISWMKDGKPVPD---HNEPVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~-~v~w~~~~~~~~~---~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      .|+.+.|.|.+.|.|.| .|.|+|++..+..   ...+.|.+..+  .|.|.|.|.+.|..+..
T Consensus        12 ~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~   73 (81)
T cd05749          12 ANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNAKGVT   73 (81)
T ss_pred             CCCCEEEEEEeeeecCCeEEEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEEeccCcE
Confidence            38999999999999999 7999999988753   24567777665  57899999999987654

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.53  E-value=3.9e-13  Score=66.17  Aligned_cols=60  Identities=32%  Similarity=0.622  Sum_probs=50.5

Q ss_pred             CCccEEEEEEe-ccCCCCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          1 MLALKFFTCKY-EGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         1 ~g~~~~l~c~~-~~~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      .|+.+.|.|.+ .+.|.+.+.|++++..+...       ....|.|.+++.+|.|.|.|.+.|..+..
T Consensus        10 ~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   77 (86)
T cd05724          10 VGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGER   77 (86)
T ss_pred             CCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCce
Confidence            48999999998 67889999999998776542       24679999999999999999999987654

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.52  E-value=2.9e-13  Score=67.28  Aligned_cols=65  Identities=28%  Similarity=0.543  Sum_probs=49.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC-CccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCc-eeEeeE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD-GKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESA-QASGEL   66 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~-~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~-~~~~~~   66 (119)
                      .|+.+.|.|.+.|.|. .+.|+++ +..+...         ....|.|..+..+|.|.|.|.+.|..+.. .+.+.+
T Consensus        14 ~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l   89 (92)
T cd05866          14 VGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVL   89 (92)
T ss_pred             CCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEE
Confidence            4899999999999887 8999984 5444221         12379999999999999999999987654 334433

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.52  E-value=1.6e-13  Score=67.33  Aligned_cols=67  Identities=15%  Similarity=0.261  Sum_probs=53.1

Q ss_pred             CccEEEEEEeccC--CCCeeEEeeCCccCCCC--------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEee
Q psy12725          2 LALKFFTCKYEGN--PVKTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE   65 (119)
Q Consensus         2 g~~~~l~c~~~~~--~~~~v~w~~~~~~~~~~--------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~   65 (119)
                      |+.+.|.|.+.+.  |.+.+.|++++..+...              ....|.|.+++..|.|.|.|.+.+..+....+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            7899999999998  77899998766543211              1257899999999999999999999877766666


Q ss_pred             EEE
Q psy12725         66 LKL   68 (119)
Q Consensus        66 ~~v   68 (119)
                      +.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            554

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.52  E-value=3.3e-13  Score=68.15  Aligned_cols=59  Identities=29%  Similarity=0.551  Sum_probs=45.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----------CCCeEEEec-----CCCCCCeEEEEEEEcCCCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----------NEPVFRIDS-----VRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----------~~~~l~~~~-----~~~~d~g~y~C~~~~~~~~   59 (119)
                      .|+.+.|.|.+.+.|.+.+.|+|++..+...           ....+.+..     ++.+|.|.|.|.+.|..+.
T Consensus        15 ~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~   89 (100)
T cd07693          15 KGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGE   89 (100)
T ss_pred             CCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccc
Confidence            3899999999999999999999999876541           111222212     2678999999999999876

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.52  E-value=1.6e-13  Score=68.46  Aligned_cols=59  Identities=19%  Similarity=0.323  Sum_probs=48.5

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC------CCCeEEEecCC-CCCCeEEEEEEEcCCCCc
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVR-KEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~-~~d~g~y~C~~~~~~~~~   60 (119)
                      |..+.|.|.+.|.|.|.++|+|++..+...      ....|.|..+. .+|.|.|.|.+.|..+..
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~   84 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKV   84 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceE
Confidence            457999999999999999999998876432      23578888775 689999999999987654

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.51  E-value=5.5e-13  Score=71.29  Aligned_cols=78  Identities=18%  Similarity=0.361  Sum_probs=58.0

Q ss_pred             CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccC-CC-CeEEEEEC
Q psy12725         34 PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PT-PEISWYLD  111 (119)
Q Consensus        34 ~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~  111 (119)
                      ++|.|.+++..|+|.|.|.+.+..+.....+.+.+.   .+|.+...+.......|..+.|.|.+.+. |. ..+.|+++
T Consensus         1 asL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~---~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~   77 (139)
T cd05771           1 ASLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS---EPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTRE   77 (139)
T ss_pred             CeEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe---cCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEEC
Confidence            368999999999999999998865555555555553   46777665544333478889999999987 43 37999998


Q ss_pred             CEE
Q psy12725        112 GKK  114 (119)
Q Consensus       112 ~~~  114 (119)
                      |..
T Consensus        78 g~~   80 (139)
T cd05771          78 PPG   80 (139)
T ss_pred             CCC
Confidence            753

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.51  E-value=4.6e-13  Score=67.16  Aligned_cols=59  Identities=36%  Similarity=0.557  Sum_probs=47.7

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC--------CCCeEEEecC-----CCCCCeEEEEEEEcC-CCCc
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSV-----RKEDKGMYQCVIRNE-QESA   60 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~-----~~~d~g~y~C~~~~~-~~~~   60 (119)
                      |+.+.|.|.+.+.|.+.+.|+|++..+...        ....+.+..+     +..|.|.|.|.+.|. .+..
T Consensus        14 g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~   86 (95)
T cd05722          14 GGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSI   86 (95)
T ss_pred             CCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcE
Confidence            889999999999999999999999877532        1344666555     578999999999998 7654

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.50  E-value=8.1e-13  Score=64.78  Aligned_cols=67  Identities=21%  Similarity=0.371  Sum_probs=49.9

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCC-----------C--CCCeEEEecCCCCCCeEEEEEEEcCCC--CceeEeeE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPD-----------H--NEPVFRIDSVRKEDKGMYQCVIRNEQE--SAQASGEL   66 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~-----------~--~~~~l~~~~~~~~d~g~y~C~~~~~~~--~~~~~~~~   66 (119)
                      |+.+.|.|.+.+.|.+.+.|+++++....           .  ....|.|.+++..|.|.|.|.+.+...  ....++.+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            78999999999988899999986642110           0  135799999999999999999998754  23334444


Q ss_pred             EE
Q psy12725         67 KL   68 (119)
Q Consensus        67 ~v   68 (119)
                      +|
T Consensus        81 ~V   82 (84)
T cd05861          81 TV   82 (84)
T ss_pred             EE
Confidence            43

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.50  E-value=2.5e-13  Score=65.56  Aligned_cols=54  Identities=22%  Similarity=0.475  Sum_probs=45.8

Q ss_pred             CCccEEEEEEeccCCC-CeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPV-KTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~-~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|+|.+.+.|. ..+.|+||+..+. .....|.+.++ .+|+|.|.|.+.+.
T Consensus        14 ~G~~V~L~C~~~~~p~~~~~~W~kng~~l~-~~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752          14 QGEKVTLTCNGFNSPEQNSTQWYHNGKLLE-TTTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CCCCEEEEEeCCCCCCCccEEEEECCEEee-ccCCeEEEeec-ccCCEEeEEECCCC
Confidence            4899999999988764 4699999999873 34668899999 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.49  E-value=4.3e-13  Score=64.69  Aligned_cols=56  Identities=29%  Similarity=0.593  Sum_probs=44.1

Q ss_pred             EEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCC----CCCeEEEEEEEcCCCCc
Q psy12725          5 KFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRK----EDKGMYQCVIRNEQESA   60 (119)
Q Consensus         5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~----~d~g~y~C~~~~~~~~~   60 (119)
                      +.|.|.+.|.|.|.|+|+|++..+...         ....|.|..+..    .|+|.|.|.+.|..+..
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~   69 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAA   69 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeE
Confidence            478999999999999999998875321         246677777764    37899999999987654

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.49  E-value=3.8e-13  Score=64.91  Aligned_cols=56  Identities=30%  Similarity=0.602  Sum_probs=44.7

Q ss_pred             EEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCC----CCCeEEEEEEEcCCCCc
Q psy12725          5 KFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRK----EDKGMYQCVIRNEQESA   60 (119)
Q Consensus         5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~----~d~g~y~C~~~~~~~~~   60 (119)
                      +.|.|.+.|.|.|.|+|+|++..+...         ....|.|..+..    +|+|.|.|.+.|..+..
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~   69 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTA   69 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcE
Confidence            479999999999999999998876421         246777777653    68999999999987653

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.49  E-value=5.5e-13  Score=66.46  Aligned_cols=57  Identities=32%  Similarity=0.673  Sum_probs=45.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEee-CCccCCCC----------CCCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMK-DGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~-~~~~~~~~----------~~~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      +|+.+.|.|.+.|.| +.+.|++ ++..+...          ....|.|.+++.+|.|.|.|.+.|..+
T Consensus        14 ~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g   81 (92)
T cd04977          14 VGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG   81 (92)
T ss_pred             CCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence            489999999999887 4899997 55443221          124799999999999999999999853

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.49  E-value=5e-13  Score=64.35  Aligned_cols=60  Identities=18%  Similarity=0.494  Sum_probs=47.0

Q ss_pred             EEEEEEecc-CCCCeeEEeeCCccCCCC-------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEe
Q psy12725          5 KFFTCKYEG-NPVKTISWMKDGKPVPDH-------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG   64 (119)
Q Consensus         5 ~~l~c~~~~-~~~~~v~w~~~~~~~~~~-------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~   64 (119)
                      +.|.|.+.+ .|.+.+.||++++.+...             ....|.|.++...|.|.|.|.+.|..+....+.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~   74 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA   74 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence            468999864 577899999998877432             125689999999999999999999876654443

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.48  E-value=1.2e-12  Score=65.96  Aligned_cols=65  Identities=17%  Similarity=0.229  Sum_probs=51.3

Q ss_pred             CCccEEEEEEeccCCCC-eeEEeeCCccCCCCC---------------CCeEEEecCCCCC-CeEEEEEEEcCCCCceeE
Q psy12725          1 MLALKFFTCKYEGNPVK-TISWMKDGKPVPDHN---------------EPVFRIDSVRKED-KGMYQCVIRNEQESAQAS   63 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~-~v~w~~~~~~~~~~~---------------~~~l~~~~~~~~d-~g~y~C~~~~~~~~~~~~   63 (119)
                      .|+.+.|.|.+.+.|.| .+.|++++..+....               .+.|.|..++.+| .|.|.|.+.|..+.....
T Consensus        15 ~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~   94 (98)
T cd05758          15 LGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAI   94 (98)
T ss_pred             CCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcccEE
Confidence            48999999999999988 699999987664321               1368899999855 899999999998776554


Q ss_pred             ee
Q psy12725         64 GE   65 (119)
Q Consensus        64 ~~   65 (119)
                      +.
T Consensus        95 ~~   96 (98)
T cd05758          95 IS   96 (98)
T ss_pred             EE
Confidence            43

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.48  E-value=6.6e-13  Score=64.40  Aligned_cols=56  Identities=29%  Similarity=0.484  Sum_probs=44.6

Q ss_pred             EEEEEEeccCCCCeeEEeeCCccC-C-------C------CCCCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          5 KFFTCKYEGNPVKTISWMKDGKPV-P-------D------HNEPVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         5 ~~l~c~~~~~~~~~v~w~~~~~~~-~-------~------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      |+|.|.+.|.|.|.+.|++++... .       .      .....|.|..+..+|.|.|.|.+.|..+..
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   70 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGAD   70 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCC
Confidence            579999999999999999964311 0       0      134679999999999999999999987654

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.46  E-value=1.4e-12  Score=64.06  Aligned_cols=64  Identities=25%  Similarity=0.458  Sum_probs=51.3

Q ss_pred             CCccEEEEEEecc-CCCCeeEEeeCCccCCC---CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEe
Q psy12725          1 MLALKFFTCKYEG-NPVKTISWMKDGKPVPD---HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG   64 (119)
Q Consensus         1 ~g~~~~l~c~~~~-~~~~~v~w~~~~~~~~~---~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~   64 (119)
                      .|+.++|.|.+.+ .|.+.+.|++++..+..   .....|.|..++.+|+|.|.|.+.|..+......
T Consensus        15 ~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~   82 (85)
T cd05754          15 PGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATA   82 (85)
T ss_pred             CCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEE
Confidence            4899999999875 57889999998765432   2356899999999999999999999876655443

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.45  E-value=1.8e-12  Score=63.56  Aligned_cols=65  Identities=31%  Similarity=0.568  Sum_probs=51.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC----------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE   65 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~   65 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...          ....|.|..+..+|.|.|.|.+.+..+.....+.
T Consensus         8 ~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~   82 (85)
T cd05729           8 AGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYK   82 (85)
T ss_pred             CCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEE
Confidence            4889999999998888999999998765421          1236788899999999999999998765444443

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>KOG4222|consensus

Probab=99.45  E-value=4.2e-13  Score=88.97  Aligned_cols=112  Identities=29%  Similarity=0.550  Sum_probs=91.5

Q ss_pred             CCccEEEEEEe-ccCCCCeeEEeeCCccCCCC--------CCCeEEEecCCCCCCeEEEEEEEcCCCCcee-EeeEEEee
Q psy12725          1 MLALKFFTCKY-EGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA-SGELKLGG   70 (119)
Q Consensus         1 ~g~~~~l~c~~-~~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~-~~~~~v~~   70 (119)
                      .|+.+.|.|.- .+.|.+.+.|.|++..+...        ....|.|.+++..|+|.|.|++.|..+..+. ...++++ 
T Consensus       145 ~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~-  223 (1281)
T KOG4222|consen  145 VGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ-  223 (1281)
T ss_pred             ccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeec-
Confidence            37889999986 45688999999999887631        3567899999999999999999998776544 2455554 


Q ss_pred             ecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEc
Q psy12725         71 RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL  115 (119)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~  115 (119)
                        .+|.+...+....+..|..+.+.|.+.|.|.|.++|.+++-.+
T Consensus       224 --e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~  266 (1281)
T KOG4222|consen  224 --EKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSL  266 (1281)
T ss_pred             --cCCccccccccceeecccccccccccCCCCCCceeeeccCCCC
Confidence              4777888888888899999999999999999999999876544

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.45  E-value=1.6e-12  Score=64.70  Aligned_cols=58  Identities=24%  Similarity=0.469  Sum_probs=46.8

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC-------CCCeEEEecCC-CCCCeEEEEEEEcCCCC
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVR-KEDKGMYQCVIRNEQES   59 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~-~~d~g~y~C~~~~~~~~   59 (119)
                      |+.+.|.|.+.+.|.+.++|+++++.+...       ....|.|.++. ..|+|.|.|.+.|..+.
T Consensus        19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~   84 (91)
T cd04967          19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGT   84 (91)
T ss_pred             CCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCE
Confidence            457999999999999999999999877321       23567787776 48999999999998764

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.45  E-value=1.5e-12  Score=62.79  Aligned_cols=56  Identities=32%  Similarity=0.592  Sum_probs=43.4

Q ss_pred             EEEEEEeccCCCCeeEEeeCCccCCC---------CCCCeEEEecCC----CCCCeEEEEEEEcCCCCc
Q psy12725          5 KFFTCKYEGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVR----KEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         5 ~~l~c~~~~~~~~~v~w~~~~~~~~~---------~~~~~l~~~~~~----~~d~g~y~C~~~~~~~~~   60 (119)
                      +.|.|.+.|.|.|.|+|+|++..+..         .....|.|..+.    ..|+|.|.|.+.|..+..
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~   69 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTA   69 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceE
Confidence            46899999999999999999876521         134577887653    246899999999997654

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.44  E-value=2e-12  Score=64.27  Aligned_cols=67  Identities=19%  Similarity=0.300  Sum_probs=51.6

Q ss_pred             CCccEEEEEEeccC-----CCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          1 MLALKFFTCKYEGN-----PVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-----~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      .|..+.|.|...+.     +.+.+.|||+++.+...     ....|.|..+..+|+|.|+|.+.+..+.........
T Consensus         9 ~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~t   85 (92)
T cd05757           9 STKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTRT   85 (92)
T ss_pred             eccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEEE
Confidence            37888999986432     46799999999887543     357899999999999999999998865544444333

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.42  E-value=3.5e-12  Score=63.81  Aligned_cols=56  Identities=20%  Similarity=0.403  Sum_probs=45.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccC---------CC---------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPV---------PD---------HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~---------~~---------~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      +|+.+.|.|.+.+.|.+.+.|++++..+         ..         .....|.|.++..+|+|.|+|.+...
T Consensus        11 ~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~   84 (95)
T cd05882          11 VGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM   84 (95)
T ss_pred             cCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence            4999999999999999999999876421         00         01358999999999999999998873

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.41  E-value=6e-12  Score=57.97  Aligned_cols=57  Identities=42%  Similarity=0.773  Sum_probs=48.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC-----CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~-----~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.+.|.|.+.+.+.+.+.|++++..+..     .....|.|..++..|.|.|.|.+.+..
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~   62 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSA   62 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence            488999999988778889999998876652     245689999999999999999998764

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.41  E-value=3.3e-12  Score=62.44  Aligned_cols=58  Identities=21%  Similarity=0.291  Sum_probs=48.2

Q ss_pred             CCccEEEEEEecc-CCCCeeEEeeCCccCCC-CCCCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          1 MLALKFFTCKYEG-NPVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         1 ~g~~~~l~c~~~~-~~~~~v~w~~~~~~~~~-~~~~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      .|+.++|.|.+.+ .+...+.|||++..+.. .....+.|..++.+|+|.|.|.+.+..+
T Consensus        13 ~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~   72 (83)
T cd05753          13 EGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSHSNSNLSIPQATLSDSGSYHCSGIIGSY   72 (83)
T ss_pred             CCCCEEEEeeCCCCCcceEEEEEECCeEccccCCCceEEECccCHHHCEEEEEEEEeCCc
Confidence            3899999999854 45668999999987654 2457899999999999999999998765

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.39  E-value=1e-11  Score=61.55  Aligned_cols=56  Identities=23%  Similarity=0.462  Sum_probs=45.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.+.|.|...+ |.+.+.|++++..+...         ....|.|..++.+|.|.|.|.+.+..
T Consensus        10 ~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~   74 (89)
T cd04979          10 EGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHG   74 (89)
T ss_pred             CCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCc
Confidence            4899999999976 77899999998765432         12468899999999999999998764

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.37  E-value=1.3e-11  Score=60.64  Aligned_cols=55  Identities=20%  Similarity=0.359  Sum_probs=46.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC------CCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~------~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+++.|.|.+.+ +.+.+.|++|+..+....      ...|.|.+++..|+|.|.|.+...
T Consensus        10 ~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873          10 LGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             CCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence            4899999999864 678999999998875431      357899999999999999999875

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>PHA03376 BARF1; Provisional

Probab=99.36  E-value=4.1e-11  Score=65.64  Aligned_cols=108  Identities=15%  Similarity=0.290  Sum_probs=67.3

Q ss_pred             CCccEEEEEEeccC---CCCeeEEeeCCc----cC----------------------CCCCCCeEEEecCCCCCCeEEEE
Q psy12725          1 MLALKFFTCKYEGN---PVKTISWMKDGK----PV----------------------PDHNEPVFRIDSVRKEDKGMYQC   51 (119)
Q Consensus         1 ~g~~~~l~c~~~~~---~~~~v~w~~~~~----~~----------------------~~~~~~~l~~~~~~~~d~g~y~C   51 (119)
                      +|+.+.|+|.....   +.-.|.|+|.+.    -+                      ....+.+|.|.+++.+|.|.|.|
T Consensus        25 VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdGtY~C  104 (221)
T PHA03376         25 LGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLC  104 (221)
T ss_pred             eCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCceEEE
Confidence            58999999998622   344799999532    11                      00134578999999999999999


Q ss_pred             EEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         52 VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        52 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      .+..........-.++..   .|.++.......-....+...+.|...+.|.|.++|.-+
T Consensus       105 ~fQkge~~~~k~ehLt~V---~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~  161 (221)
T PHA03376        105 RMKLGETEVTKQEHLSVV---KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMP  161 (221)
T ss_pred             EEEcCCCceeeeeeeeee---ecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccc
Confidence            998654222222222221   122222222111122256678999988889999999854

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.32  E-value=1.5e-11  Score=57.16  Aligned_cols=52  Identities=35%  Similarity=0.719  Sum_probs=42.1

Q ss_pred             CccEEEEEEe-ccCCCCeeEEeeCCccCCCC-------CCC----eEEEecCCCCCCeEEEEEE
Q psy12725          2 LALKFFTCKY-EGNPVKTISWMKDGKPVPDH-------NEP----VFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         2 g~~~~l~c~~-~~~~~~~v~w~~~~~~~~~~-------~~~----~l~~~~~~~~d~g~y~C~~   53 (119)
                      |+.++|.|.+ .+.+...+.|++++......       ...    .|.|.+++.+|+|.|.|.+
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            8899999999 55678899999998766431       112    2999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.30  E-value=1.4e-11  Score=61.43  Aligned_cols=58  Identities=16%  Similarity=0.289  Sum_probs=45.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccC-C-------------------------CCCCCeEEEecCCCCCCeEEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPV-P-------------------------DHNEPVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~-~-------------------------~~~~~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      +|+.|+|.|...+.+.+.+.||++++.. .                         ......|.|.+++.+|+|.|+|.+.
T Consensus         6 ~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~v~   85 (94)
T cd07690           6 KGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICEVE   85 (94)
T ss_pred             CCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEEEEC
Confidence            4899999999988888999999654221 0                         0112469999999999999999998


Q ss_pred             cCCC
Q psy12725         55 NEQE   58 (119)
Q Consensus        55 ~~~~   58 (119)
                      +...
T Consensus        86 ~~~~   89 (94)
T cd07690          86 DKKE   89 (94)
T ss_pred             Cccc
Confidence            8753

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.28  E-value=8.1e-11  Score=58.96  Aligned_cols=56  Identities=20%  Similarity=0.391  Sum_probs=43.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCc--------c-CC---------CCCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGK--------P-VP---------DHNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~--------~-~~---------~~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.+.|.|.+.+.|.+.+.||+.+.        . ..         ......|.|.+++.+|+|.|.|.+...
T Consensus        11 eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~   84 (95)
T cd07701          11 EGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM   84 (95)
T ss_pred             cCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence            48999999999998999999986221        1 10         012357899999999999999999874

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.28  E-value=8.1e-11  Score=67.57  Aligned_cols=56  Identities=25%  Similarity=0.390  Sum_probs=46.3

Q ss_pred             CCccEEEEEEecc-----CCCCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEG-----NPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~-----~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.+.|.|.+.+     .|.+.++|||+++.+...       ....|.|.+++.+|+|.|+|.+...
T Consensus       143 ~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~  210 (227)
T PHA02826        143 SGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFN  210 (227)
T ss_pred             cCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEe
Confidence            3889999999853     357899999999887532       3457999999999999999999875

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.27  E-value=8.3e-11  Score=59.04  Aligned_cols=64  Identities=19%  Similarity=0.338  Sum_probs=46.5

Q ss_pred             CCccEEEEEEe------------ccCCCCeeEEeeCCccCCC------------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKY------------EGNPVKTISWMKDGKPVPD------------HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~------------~~~~~~~v~w~~~~~~~~~------------~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+++.|.|..            ++ +...+.|||++.....            ..+..|.|.++..+|+|.|+|++.|.
T Consensus        14 ~GE~v~l~C~~~~~~~~~~~~~~~~-~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~   92 (104)
T cd05896          14 AGEPVRIKCALFYGYIRTNYSMAQS-AGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLRNS   92 (104)
T ss_pred             CCCeEEEECCCcccccccccccccc-CCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEECCC
Confidence            38999999986            21 2347999998644322            12467899999999999999999998


Q ss_pred             CCCceeEee
Q psy12725         57 QESAQASGE   65 (119)
Q Consensus        57 ~~~~~~~~~   65 (119)
                      .......+.
T Consensus        93 t~C~~~~i~  101 (104)
T cd05896          93 TYCMKVSMS  101 (104)
T ss_pred             CcceEEEEE
Confidence            644443443

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.26  E-value=1.4e-10  Score=57.08  Aligned_cols=67  Identities=19%  Similarity=0.244  Sum_probs=49.6

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeCCccCCC----C-----------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEe
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKDGKPVPD----H-----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG   64 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~~~~~~~----~-----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~   64 (119)
                      |+.+.|.|.+.+.+  ...+.|...+.....    .           ..+.|.|.+++..|.|.|.|.+.+..+....+.
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            78999999998654  447799876542210    1           235799999999999999999999776555555


Q ss_pred             eEEE
Q psy12725         65 ELKL   68 (119)
Q Consensus        65 ~~~v   68 (119)
                      .+.|
T Consensus        81 ~~~V   84 (86)
T cd05862          81 IVIV   84 (86)
T ss_pred             EEEE
Confidence            5554

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.25  E-value=3.9e-11  Score=59.81  Aligned_cols=58  Identities=17%  Similarity=0.260  Sum_probs=47.0

Q ss_pred             CCccEEEEEEec-cCCCCeeEEeeCCccCCC---------CCCCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          1 MLALKFFTCKYE-GNPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         1 ~g~~~~l~c~~~-~~~~~~v~w~~~~~~~~~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      .|+.+.|.|... +.|.+.|.|++++.....         .....|.|.+++..|.|.|.|.+.+...
T Consensus        17 eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~   84 (96)
T cd05727          17 EGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSS   84 (96)
T ss_pred             eCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEeccc
Confidence            389999999874 568899999999764311         1357899999999999999999998753

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.25  E-value=5.5e-11  Score=57.53  Aligned_cols=56  Identities=30%  Similarity=0.554  Sum_probs=46.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.+.|.|.+.+.|...+.|++++..+... ...+.+..+...|.|.|.|.+.+..
T Consensus        13 ~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~g~y~C~~~~~~   68 (80)
T PF13895_consen   13 EGDSVTLTCSVSGNPPPQVQWYKNGSPINSS-QNGLFIPNVSPEDSGNYTCRASNGS   68 (80)
T ss_dssp             TTSEEEEEEEEESSSSSEEEEEETTEEEEEE-SSEEEESSEEGGGTEEEEEEEEETT
T ss_pred             CCCcEEEEEEEEcccceeeeeeeeeeeeeee-eeeeeeeeeccccCEEEEEEEEeCC
Confidence            4899999999998888899999998777532 2237778889999999999999864

...

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.25  E-value=1.9e-10  Score=55.52  Aligned_cols=56  Identities=21%  Similarity=0.370  Sum_probs=44.2

Q ss_pred             EEEEEEecc-CCCCeeEEeeCCccCCCCC-----C------CeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          5 KFFTCKYEG-NPVKTISWMKDGKPVPDHN-----E------PVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         5 ~~l~c~~~~-~~~~~v~w~~~~~~~~~~~-----~------~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      ++|+|...+ .|.+.|+||++++.+....     +      +.|.+.....+|.+.|+|.+.|+....
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            789999864 4888999999998875421     1      357887788889999999999986543

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.24  E-value=2.7e-10  Score=57.08  Aligned_cols=57  Identities=21%  Similarity=0.422  Sum_probs=43.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCcc---------CCC---------CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKP---------VPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~---------~~~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      +|+.++|.|.+.+.+.+.+.|++.+..         ...         .....|.|.+++.+|.|.|+|.+....
T Consensus        11 ~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   85 (95)
T cd05717          11 EGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP   85 (95)
T ss_pred             CCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence            499999999998878889999852211         100         123578999999999999999998754

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.23  E-value=2.4e-10  Score=56.79  Aligned_cols=54  Identities=20%  Similarity=0.484  Sum_probs=41.3

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCC--ccCC----C-----CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDG--KPVP----D-----HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~--~~~~----~-----~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      |+.+.|.|.. +.|.+.+.||+..  ....    .     .....|.|..+..+|+|.|+|.+.+.
T Consensus        11 G~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~   75 (91)
T cd05871          11 NNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEH   75 (91)
T ss_pred             CCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEcc
Confidence            8899999996 4688899999832  1111    0     12357999999999999999999853

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.20  E-value=6.8e-10  Score=55.70  Aligned_cols=65  Identities=17%  Similarity=0.226  Sum_probs=48.9

Q ss_pred             CCccEEEEEEeccCCCC-eeEEeeCCccCCCC---------------CCCeEEEecCCCCC-CeEEEEEEEcCCCCceeE
Q psy12725          1 MLALKFFTCKYEGNPVK-TISWMKDGKPVPDH---------------NEPVFRIDSVRKED-KGMYQCVIRNEQESAQAS   63 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~-~v~w~~~~~~~~~~---------------~~~~l~~~~~~~~d-~g~y~C~~~~~~~~~~~~   63 (119)
                      .|+.+.|.|.+.+.|.| .|.|..++..+...               ..+.|.|.++...| .|.|.|.+.|..+.....
T Consensus        15 ~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~   94 (98)
T cd05898          15 RGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAI   94 (98)
T ss_pred             CCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEE
Confidence            48999999999888866 67887765544321               23578899987767 689999999998776554


Q ss_pred             ee
Q psy12725         64 GE   65 (119)
Q Consensus        64 ~~   65 (119)
                      +.
T Consensus        95 i~   96 (98)
T cd05898          95 IQ   96 (98)
T ss_pred             EE
Confidence            43

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=99.18  E-value=5.1e-10  Score=54.58  Aligned_cols=64  Identities=20%  Similarity=0.450  Sum_probs=43.8

Q ss_pred             cEEEEEEecc-CCCCeeEEeeCCccCCCC--------CC------CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          4 LKFFTCKYEG-NPVKTISWMKDGKPVPDH--------NE------PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         4 ~~~l~c~~~~-~~~~~v~w~~~~~~~~~~--------~~------~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      .+.|.|.+.+ .|.+.++|+++++.+...        .+      +.|.+......|.+.|+|.+.+..........+.
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~   79 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVT   79 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence            3689999987 588899999999876431        11      2355555556678899999998764444433333

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.17  E-value=5.8e-10  Score=55.63  Aligned_cols=57  Identities=19%  Similarity=0.360  Sum_probs=44.7

Q ss_pred             CccEEEEEEe-c----cCCCCeeEEeeCCccCCCC--------CCCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          2 LALKFFTCKY-E----GNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         2 g~~~~l~c~~-~----~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      |....|.|.. .    ..+.+.+.|||++..+...        ....|.|..+..+|.|.|+|++.+..+
T Consensus        10 ~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~   79 (95)
T cd05897          10 STSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHE   79 (95)
T ss_pred             ccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeC
Confidence            6778899973 2    2356789999999887532        235799999999999999999998743

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=99.13  E-value=7.6e-10  Score=55.04  Aligned_cols=55  Identities=20%  Similarity=0.357  Sum_probs=44.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD------HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~------~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|+|... .+...+.|+|++.....      .....+.|.+++.+|.|.|.|...+.
T Consensus        15 ~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          15 LGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            489999999886 46678999999875432      23456899999999999999999875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.11  E-value=2.3e-09  Score=53.53  Aligned_cols=56  Identities=18%  Similarity=0.354  Sum_probs=43.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCC------------------CCCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVP------------------DHNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~------------------~~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      +|+++.|.|.+.+.....+.|++.+..+.                  .....+|.|..++.+|+|.|.|.+...
T Consensus        11 ~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881          11 EGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            49999999999987777788987553321                  012346899999999999999999864

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=99.09  E-value=4e-09  Score=54.23  Aligned_cols=69  Identities=23%  Similarity=0.451  Sum_probs=49.4

Q ss_pred             CCccEEEEEEeccCC----------CCeeEEeeCC--ccC------------C--------C------CCCCeEEEecCC
Q psy12725          1 MLALKFFTCKYEGNP----------VKTISWMKDG--KPV------------P--------D------HNEPVFRIDSVR   42 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~----------~~~v~w~~~~--~~~------------~--------~------~~~~~l~~~~~~   42 (119)
                      +|+.|+|.|.....+          ...+.|+|..  +..            .        .      ....+|.|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            699999999996543          3579999841  111            0        0      123679999999


Q ss_pred             CCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725         43 KEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus        43 ~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .+|+|.|.|.+.......+..+.+.|.
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            999999999998865556556666654

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>smart00409 IG Immunoglobulin

Probab=99.09  E-value=2.4e-09  Score=52.01  Aligned_cols=61  Identities=28%  Similarity=0.565  Sum_probs=48.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC-CccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCce
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD-GKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ   61 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~-~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~   61 (119)
                      .|+.+.|.|.+.+.+...+.|+++ +..+...         ....|.+.++...|.|.|.|.+.+..+...
T Consensus         8 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~   78 (86)
T smart00409        8 EGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSAS   78 (86)
T ss_pred             CCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence            489999999999877889999998 5544311         136789999999999999999997654433

>smart00410 IG_like Immunoglobulin like

Probab=99.09  E-value=2.4e-09  Score=52.01  Aligned_cols=61  Identities=28%  Similarity=0.565  Sum_probs=48.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC-CccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCce
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD-GKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ   61 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~-~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~   61 (119)
                      .|+.+.|.|.+.+.+...+.|+++ +..+...         ....|.+.++...|.|.|.|.+.+..+...
T Consensus         8 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~   78 (86)
T smart00410        8 EGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSAS   78 (86)
T ss_pred             CCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence            489999999999877889999998 5544311         136789999999999999999997654433

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.07  E-value=5.3e-09  Score=52.44  Aligned_cols=68  Identities=13%  Similarity=0.257  Sum_probs=52.9

Q ss_pred             CCccEEEEEEeccCCCCe-eEEeeCCccCCCC--------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEee
Q psy12725          1 MLALKFFTCKYEGNPVKT-ISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE   65 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~-v~w~~~~~~~~~~--------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~   65 (119)
                      .|+.+.|.|.+..+|.|. +.|.+++..+...              ..+.|.+..++.++.|.|+|.+.|+.......+.
T Consensus        17 ~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~   96 (101)
T cd05860          17 AGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVTFN   96 (101)
T ss_pred             CCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEEEE
Confidence            489999999999999997 9999876644221              1156888889999999999999998765555555


Q ss_pred             EEE
Q psy12725         66 LKL   68 (119)
Q Consensus        66 ~~v   68 (119)
                      +.+
T Consensus        97 l~v   99 (101)
T cd05860          97 VYV   99 (101)
T ss_pred             EEE
Confidence            544

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=99.06  E-value=7.1e-09  Score=52.97  Aligned_cols=68  Identities=26%  Similarity=0.458  Sum_probs=48.0

Q ss_pred             CCccEEEEEEeccCC------CCeeEEeeCC---cc---C----C------------------CCCCCeEEEecCCCCCC
Q psy12725          1 MLALKFFTCKYEGNP------VKTISWMKDG---KP---V----P------------------DHNEPVFRIDSVRKEDK   46 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~------~~~v~w~~~~---~~---~----~------------------~~~~~~l~~~~~~~~d~   46 (119)
                      .|+.|+|.|.....+      ...|.|++..   ..   +    .                  .....+|.|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999987542      5689999852   10   0    0                  01346899999999999


Q ss_pred             eEEEEEEEcCCCCceeEeeEEE
Q psy12725         47 GMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus        47 g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      |.|.|.+.+........+.+.|
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V  102 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEV  102 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEE
Confidence            9999999986544444444444

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=99.05  E-value=4.6e-09  Score=54.40  Aligned_cols=67  Identities=16%  Similarity=0.404  Sum_probs=46.1

Q ss_pred             CCccEEEEEEeccC----CCCeeEE-e--------------eCCccCC-C---------------CCCCeEEEecCCCCC
Q psy12725          1 MLALKFFTCKYEGN----PVKTISW-M--------------KDGKPVP-D---------------HNEPVFRIDSVRKED   45 (119)
Q Consensus         1 ~g~~~~l~c~~~~~----~~~~v~w-~--------------~~~~~~~-~---------------~~~~~l~~~~~~~~d   45 (119)
                      .|+.+.|.|.....    +...+.| |              ++++... .               ....++.|.+++..|
T Consensus        12 ~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~~sD   91 (116)
T cd05879          12 VGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLDYTD   91 (116)
T ss_pred             cCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCCccc
Confidence            48999999999663    2458999 2              2333221 0               123679999999999


Q ss_pred             CeEEEEEEEcCCCCceeEeeEE
Q psy12725         46 KGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus        46 ~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      .|.|+|.+.+..........+.
T Consensus        92 ~G~Y~C~v~n~p~~~~~~~~~~  113 (116)
T cd05879          92 NGTFTCDVKNPPDIVGKSSQVT  113 (116)
T ss_pred             CEEEEEEEEcCCCcCCceeEEE
Confidence            9999999998754433334433

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=99.05  E-value=9.9e-09  Score=52.83  Aligned_cols=68  Identities=18%  Similarity=0.360  Sum_probs=47.8

Q ss_pred             CCccEEEEEEeccCC------------CCeeEEeeCCc--c---C-------------C----------CCCCCeEEEec
Q psy12725          1 MLALKFFTCKYEGNP------------VKTISWMKDGK--P---V-------------P----------DHNEPVFRIDS   40 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~------------~~~v~w~~~~~--~---~-------------~----------~~~~~~l~~~~   40 (119)
                      +|+.|+|.|......            .+.|.|+|-..  .   +             .          .....+|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            599999999997532            45899997311  0   0             0          11457899999


Q ss_pred             CCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725         41 VRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus        41 ~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      ++.+|+|.|.|.+.+..........+.+
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v  108 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQV  108 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEE
Confidence            9999999999999976544444444444

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.04  E-value=4.8e-09  Score=51.27  Aligned_cols=54  Identities=19%  Similarity=0.371  Sum_probs=44.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      +|+.+.|.|...+ +...+.|+.++..+...     ....|.|..++..|+|.|.|.+.-
T Consensus        10 ~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E   68 (85)
T cd05872          10 PGADVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEE   68 (85)
T ss_pred             cCCCEEEECCCCC-CCccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEec
Confidence            4889999999986 46799999999877542     235578889999999999999763

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.03  E-value=1.7e-09  Score=53.88  Aligned_cols=57  Identities=14%  Similarity=0.149  Sum_probs=46.0

Q ss_pred             CCccEEEEEE-eccCCCCeeEEeeCCccCCC-------CCCCeEEEecCCCCCCe-EEEEEEEcCC
Q psy12725          1 MLALKFFTCK-YEGNPVKTISWMKDGKPVPD-------HNEPVFRIDSVRKEDKG-MYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~-~~~~~~~~v~w~~~~~~~~~-------~~~~~l~~~~~~~~d~g-~y~C~~~~~~   57 (119)
                      .|+.+.|.|. ..+.|.+.|.|++++.....       .....|.|.++...|.| .|.|.+.+..
T Consensus        17 eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~   82 (95)
T cd05845          17 EGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG   82 (95)
T ss_pred             cCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence            3899999998 58889999999976533211       23478999999999999 7999999875

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=99.02  E-value=5.7e-09  Score=52.75  Aligned_cols=65  Identities=20%  Similarity=0.358  Sum_probs=42.9

Q ss_pred             CccEEEEEEeccC---CCCeeEEeeCCc-----------cCC------C------------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGN---PVKTISWMKDGK-----------PVP------D------------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~---~~~~v~w~~~~~-----------~~~------~------------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+.|+|.|.....   ....+.|++...           ...      .            ....+|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            7899999998632   123688887431           100      0            0124699999999999999


Q ss_pred             EEEEEcCCCCceeEeeE
Q psy12725         50 QCVIRNEQESAQASGEL   66 (119)
Q Consensus        50 ~C~~~~~~~~~~~~~~~   66 (119)
                      .|.+.+........+.+
T Consensus        81 ~C~v~~~~~~~~~~i~l   97 (100)
T cd05713          81 TCFFQSDGFYEEATVEL   97 (100)
T ss_pred             EEEEecCCcEEEEEEEE
Confidence            99999765443333333

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=99.00  E-value=1.4e-08  Score=51.82  Aligned_cols=69  Identities=22%  Similarity=0.364  Sum_probs=47.8

Q ss_pred             CCccEEEEEEeccCC------CCeeEEeeCCcc-------C-C----------C----------CCCCeEEEecCCCCCC
Q psy12725          1 MLALKFFTCKYEGNP------VKTISWMKDGKP-------V-P----------D----------HNEPVFRIDSVRKEDK   46 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~------~~~v~w~~~~~~-------~-~----------~----------~~~~~l~~~~~~~~d~   46 (119)
                      .|+.|+|.|.....+      ...|.|+|....       + .          .          ....+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            389999999986542      356999984310       0 0          0          0134789999999999


Q ss_pred             eEEEEEEEcCCCCceeEeeEEEe
Q psy12725         47 GMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus        47 g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      |.|.|.+.+..+.....+.+.|.
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEE
Confidence            99999998876555555555543

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.99  E-value=1.2e-08  Score=50.66  Aligned_cols=56  Identities=18%  Similarity=0.232  Sum_probs=43.7

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCC------------------------CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPD------------------------HNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~------------------------~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      |+.|+|.|.........+.|++.......                        ....+|.|.+++.+|+|.|.|.+....
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            88999999987656668999985422100                        134689999999999999999998765

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.96  E-value=3.2e-08  Score=47.99  Aligned_cols=54  Identities=17%  Similarity=0.385  Sum_probs=38.4

Q ss_pred             EEEEEEeccC-CCCeeEEeeCCccCCCCC------------CCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          5 KFFTCKYEGN-PVKTISWMKDGKPVPDHN------------EPVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         5 ~~l~c~~~~~-~~~~v~w~~~~~~~~~~~------------~~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      +.|.|.+.|. |.+.|+||+++..+....            .+.|.+..-...|...|.|.+.|+..
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l   68 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAV   68 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCccc
Confidence            6899999765 888999999987764421            13455544445556689999999763

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=98.91  E-value=4.1e-09  Score=52.09  Aligned_cols=43  Identities=33%  Similarity=0.523  Sum_probs=36.5

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      +|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~   43 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMP   43 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCC
Confidence            3566666777778899999999999999999999999987654

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.91  E-value=5.1e-09  Score=52.72  Aligned_cols=44  Identities=39%  Similarity=0.678  Sum_probs=37.6

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~   44 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLET   44 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECcc
Confidence            35666666677788999999999999999999999999998764

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.90  E-value=4.6e-08  Score=49.18  Aligned_cols=66  Identities=23%  Similarity=0.450  Sum_probs=44.8

Q ss_pred             ccEEEEEEeccCC---CCeeEEeeCCcc---------------CCC------------CCCCeEEEecCCCCCCeEEEEE
Q psy12725          3 ALKFFTCKYEGNP---VKTISWMKDGKP---------------VPD------------HNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         3 ~~~~l~c~~~~~~---~~~v~w~~~~~~---------------~~~------------~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      +.|+|.|.....+   ...|.|+|....               ...            ....+|.|.+++..|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            5789999987653   347999984321               000            0246899999999999999999


Q ss_pred             EEc-CCCCceeEeeEEE
Q psy12725         53 IRN-EQESAQASGELKL   68 (119)
Q Consensus        53 ~~~-~~~~~~~~~~~~v   68 (119)
                      +.. +.+.......+.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            864 4445544444443

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.89  E-value=6.8e-08  Score=48.57  Aligned_cols=66  Identities=20%  Similarity=0.281  Sum_probs=43.5

Q ss_pred             CccEEEEEEeccCCC-CeeEEeeCCcc----C----C-C------------------CCCCeEEEecCCCCCCeEEEEEE
Q psy12725          2 LALKFFTCKYEGNPV-KTISWMKDGKP----V----P-D------------------HNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         2 g~~~~l~c~~~~~~~-~~v~w~~~~~~----~----~-~------------------~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      |+.|+|.|....... ..+.|+|....    +    . .                  ....+|.|.+++.+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            789999999764432 36999984211    0    0 0                  12467999999999999999998


Q ss_pred             Ec-CCCCceeEeeEE
Q psy12725         54 RN-EQESAQASGELK   67 (119)
Q Consensus        54 ~~-~~~~~~~~~~~~   67 (119)
                      .. +.+.....+.++
T Consensus        81 ~~~p~g~~~~~~~L~   95 (97)
T cd05846          81 NTFPDGSKSGTMCLT   95 (97)
T ss_pred             EeCCCCCeeeEEEEE
Confidence            64 344433333333

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.88  E-value=1.5e-08  Score=51.92  Aligned_cols=57  Identities=12%  Similarity=0.296  Sum_probs=43.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCcc--C-------------C----------CCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKP--V-------------P----------DHNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~--~-------------~----------~~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.+.+.+...+.||+....  .             .          ......|.|.+++.+|+|.|.|.+.+
T Consensus        12 ~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   91 (109)
T cd04983          12 EGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSE   91 (109)
T ss_pred             CCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEec
Confidence            489999999998767778999984310  0             0          01235789999999999999999986


Q ss_pred             CC
Q psy12725         56 EQ   57 (119)
Q Consensus        56 ~~   57 (119)
                      ..
T Consensus        92 ~~   93 (109)
T cd04983          92 SG   93 (109)
T ss_pred             CC
Confidence            53

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.87  E-value=4.8e-08  Score=49.73  Aligned_cols=57  Identities=12%  Similarity=0.126  Sum_probs=42.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccC---------CC----------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPV---------PD----------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~---------~~----------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      +|+.|.|.|.........+.|||.....         ..                ..+.+|.|.+++..|.|.|.|.+.+
T Consensus        12 ~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v~~   91 (105)
T cd05774          12 EGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQTIT   91 (105)
T ss_pred             CCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEEEEe
Confidence            4899999987643344489999953211         00                1246899999999999999999988


Q ss_pred             CC
Q psy12725         56 EQ   57 (119)
Q Consensus        56 ~~   57 (119)
                      ..
T Consensus        92 ~~   93 (105)
T cd05774          92 TN   93 (105)
T ss_pred             CC
Confidence            75

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.87  E-value=1.7e-08  Score=50.76  Aligned_cols=57  Identities=16%  Similarity=0.317  Sum_probs=42.6

Q ss_pred             CCccEEEEEEecc-CCCCeeEEeeCCccC----C----C----------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEG-NPVKTISWMKDGKPV----P----D----------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~-~~~~~v~w~~~~~~~----~----~----------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      +|++|+|.|.... .....+.|++.....    .    .                ....+|.|.+++.+|+|.|.|.+..
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~   82 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT   82 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence            5999999998865 445689999743111    0    0                1236799999999999999999987


Q ss_pred             CC
Q psy12725         56 EQ   57 (119)
Q Consensus        56 ~~   57 (119)
                      ..
T Consensus        83 ~~   84 (97)
T cd05775          83 KN   84 (97)
T ss_pred             CC
Confidence            65

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=98.83  E-value=1.4e-08  Score=51.16  Aligned_cols=42  Identities=17%  Similarity=0.254  Sum_probs=35.8

Q ss_pred             eeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         76 VIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        76 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+...+....+..|+.+.|.|.+.|.|.+.+.|+|+|..+..
T Consensus         2 ~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~   43 (98)
T cd05762           2 QIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQE   43 (98)
T ss_pred             ceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecC
Confidence            445556666788999999999999999999999999998864

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=98.83  E-value=1.6e-08  Score=50.39  Aligned_cols=44  Identities=27%  Similarity=0.622  Sum_probs=37.8

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      +|.+...+....+..|+.+.|.|.+.+.|.|.+.|+++|..+..
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~   46 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVS   46 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCC
Confidence            56666667677789999999999999999999999999987754

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.81  E-value=1.9e-07  Score=47.20  Aligned_cols=64  Identities=16%  Similarity=0.378  Sum_probs=42.2

Q ss_pred             ccEEEEEEeccCC---CCeeEEeeCCcc-----C---C--------C-------------CCCCeEEEecCCCCCCeEEE
Q psy12725          3 ALKFFTCKYEGNP---VKTISWMKDGKP-----V---P--------D-------------HNEPVFRIDSVRKEDKGMYQ   50 (119)
Q Consensus         3 ~~~~l~c~~~~~~---~~~v~w~~~~~~-----~---~--------~-------------~~~~~l~~~~~~~~d~g~y~   50 (119)
                      ..|+|.|.....+   ...|.|+|....     +   .        .             ....+|.|.+++.+|+|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~   80 (100)
T cd05888           1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK   80 (100)
T ss_pred             CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence            3689999986543   447999983210     0   0        0             12457999999999999999


Q ss_pred             EEEEc-CCCCceeEeeE
Q psy12725         51 CVIRN-EQESAQASGEL   66 (119)
Q Consensus        51 C~~~~-~~~~~~~~~~~   66 (119)
                      |.+.+ +.+..+....+
T Consensus        81 C~v~~~p~g~~~~~~~L   97 (100)
T cd05888          81 CRVITFPAGNFEAELVL   97 (100)
T ss_pred             EEEEeCCCCCeeeEEEE
Confidence            99886 44444333333

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.81  E-value=5.5e-08  Score=50.00  Aligned_cols=55  Identities=15%  Similarity=0.272  Sum_probs=41.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCc--cCC--------------------------CCCCCeEEEecCCCCCCeEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGK--PVP--------------------------DHNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~--~~~--------------------------~~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      .|+.|+|.|.+.+ +...+.|||...  .+.                          ......|.|.+++.+|+|.|.|.
T Consensus        12 ~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca   90 (110)
T cd05899          12 RGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAVYLCA   90 (110)
T ss_pred             CCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEEEEEE
Confidence            4899999999987 667899998421  110                          01235789999999999999999


Q ss_pred             EEcC
Q psy12725         53 IRNE   56 (119)
Q Consensus        53 ~~~~   56 (119)
                      +...
T Consensus        91 ~~~~   94 (110)
T cd05899          91 SSLG   94 (110)
T ss_pred             eeCC
Confidence            8764

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.80  E-value=1.3e-07  Score=49.06  Aligned_cols=58  Identities=19%  Similarity=0.418  Sum_probs=40.6

Q ss_pred             CCccEEEEEEeccCC----CCeeEEeeC----Ccc--C----C-----C---------------CCCCeEEEecCCCCCC
Q psy12725          1 MLALKFFTCKYEGNP----VKTISWMKD----GKP--V----P-----D---------------HNEPVFRIDSVRKEDK   46 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~----~~~v~w~~~----~~~--~----~-----~---------------~~~~~l~~~~~~~~d~   46 (119)
                      .|+.++|.|.....+    ...+.||+.    +..  +    .     .               ....+|.|.+++.+|+
T Consensus        12 ~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~~~D~   91 (115)
T cd05880          12 NGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQPTDN   91 (115)
T ss_pred             cCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCChhhC
Confidence            489999999986432    236999741    110  1    0     0               0235699999999999


Q ss_pred             eEEEEEEEcCCC
Q psy12725         47 GMYQCVIRNEQE   58 (119)
Q Consensus        47 g~y~C~~~~~~~   58 (119)
                      |.|.|.+.+...
T Consensus        92 G~Y~C~v~~~~~  103 (115)
T cd05880          92 GTYTCQVKNPPD  103 (115)
T ss_pred             EEEEEEEEeCCC
Confidence            999999997654

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.79  E-value=2e-08  Score=48.82  Aligned_cols=36  Identities=31%  Similarity=0.637  Sum_probs=31.8

Q ss_pred             CCccccCCCCcEEEEeEEccCCCC-eEEEEECCEEcc
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLV  116 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~  116 (119)
                      +.+..+..|+.+.|.|.+.|.|.| .+.|+++|.++.
T Consensus         5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~   41 (81)
T cd05749           5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLG   41 (81)
T ss_pred             CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECC
Confidence            445567899999999999999999 799999999875

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.79  E-value=3.8e-09  Score=50.29  Aligned_cols=51  Identities=29%  Similarity=0.641  Sum_probs=39.1

Q ss_pred             EEEEEEeccCC-CCeeEEe------eCCccCCCCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          5 KFFTCKYEGNP-VKTISWM------KDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         5 ~~l~c~~~~~~-~~~v~w~------~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      +.|.|.+.+.+ .+.+.|+      .............|.+..+..+|.|.|.|++.|
T Consensus        18 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   18 VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            89999998876 7899999      111111122457899999999999999999975

...

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.78  E-value=4.3e-07  Score=45.81  Aligned_cols=35  Identities=17%  Similarity=0.399  Sum_probs=26.9

Q ss_pred             CCeEEEecCCCCCCeEEEEEEEc-CCCCceeEeeEE
Q psy12725         33 EPVFRIDSVRKEDKGMYQCVIRN-EQESAQASGELK   67 (119)
Q Consensus        33 ~~~l~~~~~~~~d~g~y~C~~~~-~~~~~~~~~~~~   67 (119)
                      ..+|.|.+++..|+|.|.|.+.+ +.+..+..+.+.
T Consensus        62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~   97 (99)
T cd05886          62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLT   97 (99)
T ss_pred             cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEE
Confidence            37899999999999999999998 455444444444

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.77  E-value=1.9e-07  Score=48.49  Aligned_cols=58  Identities=17%  Similarity=0.457  Sum_probs=40.5

Q ss_pred             CCccEEEEEEeccCC----CCeeEEeeCCc------cC---------C--C--------------CCCCeEEEecCCCCC
Q psy12725          1 MLALKFFTCKYEGNP----VKTISWMKDGK------PV---------P--D--------------HNEPVFRIDSVRKED   45 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~----~~~v~w~~~~~------~~---------~--~--------------~~~~~l~~~~~~~~d   45 (119)
                      .|+.|+|.|......    ...+.|++...      .+         .  .              ....+|.|.+++.+|
T Consensus        12 ~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   91 (116)
T cd05715          12 NGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQFTD   91 (116)
T ss_pred             cCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCCccc
Confidence            489999999986432    24699975211      00         0  0              012568999999999


Q ss_pred             CeEEEEEEEcCCC
Q psy12725         46 KGMYQCVIRNEQE   58 (119)
Q Consensus        46 ~g~y~C~~~~~~~   58 (119)
                      +|.|.|.+.+...
T Consensus        92 ~G~Y~C~v~~~~~  104 (116)
T cd05715          92 NGTYTCDVKNPPD  104 (116)
T ss_pred             CEEEEEEEEeCCC
Confidence            9999999997643

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.77  E-value=5.2e-07  Score=46.66  Aligned_cols=37  Identities=24%  Similarity=0.495  Sum_probs=29.8

Q ss_pred             CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725         33 EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus        33 ~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      ..+|.|.+++..|.|.|.|.+.+........+.+.|.
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            4789999999999999999999876555555665553

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.76  E-value=3.7e-08  Score=50.11  Aligned_cols=57  Identities=19%  Similarity=0.371  Sum_probs=43.0

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeCCc--cC-------------CC-----------C--CCCeEEEecCCCCCCeEEEE
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKDGK--PV-------------PD-----------H--NEPVFRIDSVRKEDKGMYQC   51 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~~~--~~-------------~~-----------~--~~~~l~~~~~~~~d~g~y~C   51 (119)
                      .|+.|+|.|.+... +...+.|++...  ..             ..           .  ...+|.|.+++.+|.|.|.|
T Consensus         5 ~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C   84 (105)
T cd00099           5 EGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVYYC   84 (105)
T ss_pred             CCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEEEE
Confidence            48999999999876 567899998432  00             00           0  23478999999999999999


Q ss_pred             EEEcCC
Q psy12725         52 VIRNEQ   57 (119)
Q Consensus        52 ~~~~~~   57 (119)
                      .+.+..
T Consensus        85 ~v~~~~   90 (105)
T cd00099          85 AVSLSG   90 (105)
T ss_pred             EEecCC
Confidence            998764

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.74  E-value=1.2e-07  Score=47.38  Aligned_cols=53  Identities=17%  Similarity=0.276  Sum_probs=41.0

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCC---------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~---------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      |+.|+|.|.... ....+.|||++.....         .....+.|..++..|.|.|.|....
T Consensus        15 G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711          15 GENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            899999998865 4557899998764321         1234678999999999999999764

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.72  E-value=3.5e-07  Score=46.97  Aligned_cols=69  Identities=19%  Similarity=0.346  Sum_probs=47.4

Q ss_pred             CCccEEEEEEeccCC-------CCeeEEeeCC-----ccC------C------C--------------CCCCeEEEecCC
Q psy12725          1 MLALKFFTCKYEGNP-------VKTISWMKDG-----KPV------P------D--------------HNEPVFRIDSVR   42 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~-------~~~v~w~~~~-----~~~------~------~--------------~~~~~l~~~~~~   42 (119)
                      +|+.|+|.|...-.|       .+.+.|.+-.     +..      .      .              ....+|.|.+++
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~   80 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR   80 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence            589999999965322       3689998731     100      0      0              124689999999


Q ss_pred             CCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725         43 KEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus        43 ~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .+|.|.|.|.+..........+.+.|.
T Consensus        81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          81 YSDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             HHHCEEEEEEEEECCcccEEEEEEEEE
Confidence            999999999999865445555555553

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.71  E-value=1.3e-07  Score=47.58  Aligned_cols=55  Identities=16%  Similarity=0.300  Sum_probs=40.1

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeCCc--cCC-----------C----------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKDGK--PVP-----------D----------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~~~--~~~-----------~----------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      +|+.|+|.|...+.  ....+.||+...  ...           .          .....|.|.+++.+|+|.|.|.+.+
T Consensus         5 ~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~   84 (98)
T cd04984           5 PGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQVWD   84 (98)
T ss_pred             CCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEEEcc
Confidence            48999999998764  456799997321  110           0          0124689999999999999998875

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.70  E-value=9.1e-08  Score=47.85  Aligned_cols=30  Identities=27%  Similarity=0.643  Sum_probs=27.1

Q ss_pred             CCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         88 PGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        88 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      +|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus        18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~   47 (94)
T cd05848          18 DEKKVILNCEARGNPVPTYRWLRNGTEIDT   47 (94)
T ss_pred             CCCEEEEEEEeeecCCCEEEEEECCeECcc
Confidence            578999999999999999999999998853

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.69  E-value=6.5e-07  Score=43.64  Aligned_cols=66  Identities=12%  Similarity=0.287  Sum_probs=46.9

Q ss_pred             CccEEEEEEeccCCCC--eeEEeeCCcc-C--CCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          2 LALKFFTCKYEGNPVK--TISWMKDGKP-V--PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~--~v~w~~~~~~-~--~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      |+.++|.|.....+.|  .|.|...+.. .  ......+|.+..+...|+|.++|.+.+........+.+.
T Consensus        14 G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~   84 (88)
T cd07694          14 GTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIK   84 (88)
T ss_pred             CCcEEEEEecCCCCCCCccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEE
Confidence            8999999999664444  8999864332 2  123667899999999999999999987533333333333

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.68  E-value=6.6e-07  Score=49.48  Aligned_cols=68  Identities=21%  Similarity=0.371  Sum_probs=46.5

Q ss_pred             CccEEEEEEec-cCCCCeeEEeeCCccCC----------------------CCCCCeEEEecCCCCCCeEEEEEEEcC-C
Q psy12725          2 LALKFFTCKYE-GNPVKTISWMKDGKPVP----------------------DHNEPVFRIDSVRKEDKGMYQCVIRNE-Q   57 (119)
Q Consensus         2 g~~~~l~c~~~-~~~~~~v~w~~~~~~~~----------------------~~~~~~l~~~~~~~~d~g~y~C~~~~~-~   57 (119)
                      |+.|+|.|... +...+.+.|+|....+-                      ......+.|.+++.+|+|.|.|.+..- .
T Consensus        30 ge~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~  109 (189)
T PHA02987         30 HVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLS  109 (189)
T ss_pred             CCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecCC
Confidence            78999999985 44577899998532110                      013467899999999999999987643 3


Q ss_pred             C-CceeEeeEEEe
Q psy12725         58 E-SAQASGELKLG   69 (119)
Q Consensus        58 ~-~~~~~~~~~v~   69 (119)
                      + .......+.+.
T Consensus       110 G~~~~gt~CLtVt  122 (189)
T PHA02987        110 KNNEKGVVCLNVT  122 (189)
T ss_pred             CCCceeEEEEEEE
Confidence            3 33333444443

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.68  E-value=1.4e-07  Score=47.15  Aligned_cols=57  Identities=23%  Similarity=0.461  Sum_probs=40.1

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC---------CC------CeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~---------~~------~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      |+.+.|.|.+.+. | ...++|++++..+...         .+      +.|.+......+.+.|.|++.+...
T Consensus        13 ~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          13 GGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             CCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            7889999999987 5 4689999998766321         11      1233333333588999999998754

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.67  E-value=7.8e-07  Score=43.46  Aligned_cols=54  Identities=20%  Similarity=0.455  Sum_probs=37.3

Q ss_pred             EEEEEEeccC-CCCeeEEeeCCccCCCC--------CCCe------EEEecCCCCCCeEEEEEEEcCCC
Q psy12725          5 KFFTCKYEGN-PVKTISWMKDGKPVPDH--------NEPV------FRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         5 ~~l~c~~~~~-~~~~v~w~~~~~~~~~~--------~~~~------l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      +.|.|.+.+. |.+.|+|+++++.+...        ....      +.+......+...|.|.+.+...
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence            6899999875 88899999999876431        1112      23323334566789999998754

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=98.66  E-value=9.4e-08  Score=47.58  Aligned_cols=35  Identities=29%  Similarity=0.598  Sum_probs=30.7

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ...+.+|+.+.|.|.+.|.|.|.+.|++++..+..
T Consensus        10 ~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~   44 (92)
T cd05737          10 VVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALAL   44 (92)
T ss_pred             eEEEeCCCcEEEEEEEEecCCCeEEEEECCEECcc
Confidence            34577899999999999999999999999988754

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.66  E-value=7.8e-08  Score=47.50  Aligned_cols=43  Identities=35%  Similarity=0.785  Sum_probs=36.5

Q ss_pred             CeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      |.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~   43 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTS   43 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEES
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceee
Confidence            3455556677788999999999999999999999999998875

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.66  E-value=1e-07  Score=47.74  Aligned_cols=37  Identities=35%  Similarity=0.520  Sum_probs=31.5

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      |....+.+|+.+.|.|.+.+.|.|.+.|+|+|..+..
T Consensus         6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~   42 (95)
T cd05722           6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNL   42 (95)
T ss_pred             CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECcc
Confidence            4444567899999999999999999999999998864

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.64  E-value=1.2e-07  Score=46.51  Aligned_cols=38  Identities=34%  Similarity=0.713  Sum_probs=32.7

Q ss_pred             cCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         80 SFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .|....+..|+.+.|.|.+.|.|.|.+.|++++..+..
T Consensus         5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~   42 (85)
T cd05728           5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLAS   42 (85)
T ss_pred             cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCC
Confidence            34456678999999999999999999999999998764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.64  E-value=5.3e-07  Score=43.91  Aligned_cols=55  Identities=25%  Similarity=0.456  Sum_probs=36.4

Q ss_pred             EEEEEEeccC-CCCeeEEeeCCccCCCC-------CCC------eEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          5 KFFTCKYEGN-PVKTISWMKDGKPVPDH-------NEP------VFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         5 ~~l~c~~~~~-~~~~v~w~~~~~~~~~~-------~~~------~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      +.|.|.+.+. |.+.+.|+++++.+...       ...      .+.+......+.+.|.|.+.+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            6899999765 78899999998876431       111      1222222334556899999987543

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.63  E-value=1.5e-07  Score=45.43  Aligned_cols=40  Identities=23%  Similarity=0.394  Sum_probs=32.3

Q ss_pred             eeecCCccccCCCCcEEEEeEEccCCCC-eEEEEECCEEcc
Q psy12725         77 IKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLV  116 (119)
Q Consensus        77 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~  116 (119)
                      +...|....+.+|+.++|.|.+.+.|.+ .+.|+|||..+.
T Consensus         3 v~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~   43 (78)
T cd05752           3 VSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE   43 (78)
T ss_pred             EEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee
Confidence            4445555678899999999999887754 799999999873

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.63  E-value=2e-07  Score=47.61  Aligned_cols=56  Identities=16%  Similarity=0.297  Sum_probs=40.2

Q ss_pred             CCccEEEEEEeccCC-CCeeEEeeCC--ccC----------CC-----------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNP-VKTISWMKDG--KPV----------PD-----------HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~-~~~v~w~~~~--~~~----------~~-----------~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|.+.+.. ...+.|||..  ...          ..           .....|.|.+++.+|+|.|.|.+.+.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          14 PGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQQYGT   93 (106)
T ss_pred             CCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence            489999999987654 5679999732  110          00           01235899999999999999998653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.63  E-value=1.2e-07  Score=44.69  Aligned_cols=29  Identities=31%  Similarity=0.790  Sum_probs=25.9

Q ss_pred             CCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         89 GPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        89 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      |+.+.|.|.+.|.|.|.+.|++++..+..
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~   29 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTK   29 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCC
Confidence            57899999999999999999999987753

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.63  E-value=1.9e-07  Score=48.41  Aligned_cols=55  Identities=22%  Similarity=0.473  Sum_probs=40.9

Q ss_pred             CCccEEEEEEecc--CCCCeeEEeeC--CccC-------------------CC-------C--CCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEG--NPVKTISWMKD--GKPV-------------------PD-------H--NEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~--~~~~~v~w~~~--~~~~-------------------~~-------~--~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.|+|.|.+.+  .+...+.|||.  +...                   ..       .  ....|.|.+++.+|+|.
T Consensus        12 ~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~   91 (116)
T cd04982          12 ESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKEDSAT   91 (116)
T ss_pred             CCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHHCEE
Confidence            4899999999876  56778999983  2111                   00       0  23468999999999999


Q ss_pred             EEEEEEc
Q psy12725         49 YQCVIRN   55 (119)
Q Consensus        49 y~C~~~~   55 (119)
                      |.|.+..
T Consensus        92 Y~C~~~~   98 (116)
T cd04982          92 YYCAYWE   98 (116)
T ss_pred             EEEEEec
Confidence            9999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.62  E-value=1.7e-06  Score=43.35  Aligned_cols=66  Identities=18%  Similarity=0.279  Sum_probs=44.6

Q ss_pred             ccEEEEEEeccC-CCCeeEEeeCCc----cC-------C----------------CCCCCeEEEecCCCCCCeEEEEEEE
Q psy12725          3 ALKFFTCKYEGN-PVKTISWMKDGK----PV-------P----------------DHNEPVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus         3 ~~~~l~c~~~~~-~~~~v~w~~~~~----~~-------~----------------~~~~~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      +.|+|.|..... ....|.|.|...    .+       .                .....+|.|.+++..|+|.|.|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            468999998743 345899977321    11       0                0124689999999999999999975


Q ss_pred             -cCCCCceeEeeEEE
Q psy12725         55 -NEQESAQASGELKL   68 (119)
Q Consensus        55 -~~~~~~~~~~~~~v   68 (119)
                       .+.|....+..+.+
T Consensus        81 tfP~G~~~~~~~l~~   95 (96)
T cd05887          81 TFPLGNTQSSTTVTV   95 (96)
T ss_pred             eCCCCCeeEEEEEEE
Confidence             45566555555543

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.61  E-value=1.1e-07  Score=45.43  Aligned_cols=30  Identities=37%  Similarity=0.686  Sum_probs=27.0

Q ss_pred             CCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         88 PGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        88 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      +|+.+.|.|.+.|.|.|.+.|++++..+..
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~   30 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSV   30 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCC
Confidence            588999999999999999999999987753

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.61  E-value=2.3e-07  Score=46.40  Aligned_cols=28  Identities=18%  Similarity=0.515  Sum_probs=25.6

Q ss_pred             CCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         89 GPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        89 g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      |+.+.|.|.+.|.|.|.+.|+++|..+.
T Consensus        19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~   46 (94)
T cd05850          19 EEKVTLGCRARASPPATYRWKMNGTEIK   46 (94)
T ss_pred             CCeEEEEeEceeCCCCEEEEEECCEECc
Confidence            5689999999999999999999999875

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.60  E-value=1.6e-07  Score=46.99  Aligned_cols=33  Identities=33%  Similarity=0.664  Sum_probs=29.7

Q ss_pred             ccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         85 TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+..|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus        14 ~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~   46 (95)
T cd05730          14 TANLGQSVTLACDADGFPEPTMTWTKDGEPIES   46 (95)
T ss_pred             EEeCCCCEEEEEeccEeCCCEEEEEECCEECcC
Confidence            567899999999999999999999999988754

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.59  E-value=6.5e-07  Score=43.72  Aligned_cols=54  Identities=28%  Similarity=0.516  Sum_probs=36.9

Q ss_pred             EEEEEEeccC-CCCeeEEeeCCccCCCC--------CC------CeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          5 KFFTCKYEGN-PVKTISWMKDGKPVPDH--------NE------PVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         5 ~~l~c~~~~~-~~~~v~w~~~~~~~~~~--------~~------~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      ++|.|.+.+. |...++|+|+++.+...        ..      +.+.+......+...|.|.+.+...
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l   70 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL   70 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence            6899999874 77899999999876431        11      2334433334556789999988753

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.59  E-value=1.7e-07  Score=47.12  Aligned_cols=42  Identities=24%  Similarity=0.503  Sum_probs=32.4

Q ss_pred             CeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      |.+...+.......|+.+.|.|.+.|.|.|.+.|++++..+.
T Consensus         3 p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~   44 (97)
T cd05869           3 PKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNIS   44 (97)
T ss_pred             ceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCcccc
Confidence            555554444445568999999999999999999999887654

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.59  E-value=2.1e-07  Score=46.15  Aligned_cols=34  Identities=24%  Similarity=0.670  Sum_probs=30.0

Q ss_pred             cccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         84 ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ..+..|+.+.|.|.+.|.|.|.+.|++++..+..
T Consensus        10 ~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~   43 (90)
T cd04972          10 TVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQ   43 (90)
T ss_pred             EEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccC
Confidence            3478999999999999999999999999987743

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.59  E-value=1.9e-06  Score=43.21  Aligned_cols=62  Identities=21%  Similarity=0.402  Sum_probs=41.7

Q ss_pred             ccEEEEEEeccC-CCCeeEEeeCCc----cC-----------CC------------CCCCeEEEecCCCCCCeEEEEEEE
Q psy12725          3 ALKFFTCKYEGN-PVKTISWMKDGK----PV-----------PD------------HNEPVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus         3 ~~~~l~c~~~~~-~~~~v~w~~~~~----~~-----------~~------------~~~~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      +.++|.|..... ....|+|.|...    .+           ..            ....+|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            468999998643 355788987421    01           00            124688999999999999999986


Q ss_pred             c-CCCCceeEe
Q psy12725         55 N-EQESAQASG   64 (119)
Q Consensus        55 ~-~~~~~~~~~   64 (119)
                      . +.+.....+
T Consensus        81 t~P~g~~~~~i   91 (96)
T cd05889          81 TYPQGSWEKVI   91 (96)
T ss_pred             eCCCCCeEEEE
Confidence            4 444444333

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.59  E-value=3e-07  Score=47.16  Aligned_cols=56  Identities=16%  Similarity=0.405  Sum_probs=42.1

Q ss_pred             CCccEEEEEEec-cCCCCeeEEeeCCc-----cCC----C---------------------CCCCeEEEecCCCCCCeEE
Q psy12725          1 MLALKFFTCKYE-GNPVKTISWMKDGK-----PVP----D---------------------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         1 ~g~~~~l~c~~~-~~~~~~v~w~~~~~-----~~~----~---------------------~~~~~l~~~~~~~~d~g~y   49 (119)
                      +|+.|.|.|... ......+.|++...     .+.    .                     ....+|.|.+++..|+|.|
T Consensus        15 ~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y   94 (114)
T PF07686_consen   15 EGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDSGTY   94 (114)
T ss_dssp             TTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGEEEE
T ss_pred             cCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcCEEE
Confidence            589999999998 44566899998322     110    0                     0124699999999999999


Q ss_pred             EEEEEcC
Q psy12725         50 QCVIRNE   56 (119)
Q Consensus        50 ~C~~~~~   56 (119)
                      .|.+...
T Consensus        95 ~C~v~~~  101 (114)
T PF07686_consen   95 FCQVSTS  101 (114)
T ss_dssp             EEEEEES
T ss_pred             EEEEEEC
Confidence            9999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.59  E-value=1.5e-07  Score=45.17  Aligned_cols=28  Identities=39%  Similarity=0.799  Sum_probs=25.8

Q ss_pred             CCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         89 GPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        89 g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      |+.+.|.|.+.|.|.|.+.|+++|..+.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~   28 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIE   28 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEcc
Confidence            6788999999999999999999999875

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.58  E-value=1.7e-07  Score=44.92  Aligned_cols=29  Identities=31%  Similarity=0.771  Sum_probs=26.2

Q ss_pred             CCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         89 GPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        89 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      |+.+.|.|.+.|.|.|.+.|+++|.++..
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~   29 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEG   29 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCC
Confidence            67899999999999999999999998764

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.58  E-value=6.8e-07  Score=45.05  Aligned_cols=57  Identities=14%  Similarity=0.327  Sum_probs=39.4

Q ss_pred             CCccEEEEEEeccC-CCCe--eEEeeCCccCCCCC-----------CCeEEEecCCCCCC-eEEEEEEEcCCC
Q psy12725          1 MLALKFFTCKYEGN-PVKT--ISWMKDGKPVPDHN-----------EPVFRIDSVRKEDK-GMYQCVIRNEQE   58 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~--v~w~~~~~~~~~~~-----------~~~l~~~~~~~~d~-g~y~C~~~~~~~   58 (119)
                      +|+.++|.|.+.+. |...  |.|||++..+..+.           ...+.+. +.++|. ..|+|.+.....
T Consensus        15 eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~   86 (100)
T cd05755          15 VGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLR   86 (100)
T ss_pred             CCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccC
Confidence            48999999999764 6555  79999887774421           2344544 445554 589999987643

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=98.56  E-value=1.6e-07  Score=47.54  Aligned_cols=35  Identities=29%  Similarity=0.506  Sum_probs=30.5

Q ss_pred             ccccCCCCcEEEEeEEcc-CCCCeEEEEECCEEccc
Q psy12725         83 DETLNPGPNYYFKCIASG-NPTPEISWYLDGKKLVN  117 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~~  117 (119)
                      ...+..|+.+.|.|.+.+ .|+|.+.|+|||.++..
T Consensus        12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~   47 (101)
T cd04975          12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTN   47 (101)
T ss_pred             eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCC
Confidence            345778999999999999 78889999999998864

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.56  E-value=3.1e-07  Score=45.85  Aligned_cols=28  Identities=21%  Similarity=0.392  Sum_probs=25.1

Q ss_pred             CCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         89 GPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        89 g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      +..+.|.|.+.|.|.|.+.|++++..+.
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~   46 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRKNNLDID   46 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEECCEEcc
Confidence            4579999999999999999999998774

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.55  E-value=2.5e-07  Score=45.62  Aligned_cols=40  Identities=30%  Similarity=0.450  Sum_probs=31.8

Q ss_pred             eeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         77 IKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        77 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      +...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.
T Consensus         4 ~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~   43 (88)
T cd04968           4 IVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMP   43 (88)
T ss_pred             EEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCC
Confidence            3344455567789999999999999999999999876543

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>KOG3515|consensus

Probab=98.54  E-value=1.4e-06  Score=57.42  Aligned_cols=114  Identities=14%  Similarity=0.245  Sum_probs=78.3

Q ss_pred             CCccEEEEEEeccCC-CCeeEEeeCCccCCC----CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCC
Q psy12725          1 MLALKFFTCKYEGNP-VKTISWMKDGKPVPD----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP   75 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~-~~~v~w~~~~~~~~~----~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~   75 (119)
                      .|+.|.|.|.+.+.| ...+.||+.++.+..    ..+..+.+....++..+.|.|.+.+..+ ......+...+ ..+|
T Consensus        21 ~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~-~~~~~~~~l~v-~~~p   98 (741)
T KOG3515|consen   21 LGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGRYATIADPTLVTTGDVRDTVAELNCRAFNSVG-MPSRCPMILDV-DYPP   98 (741)
T ss_pred             cCCcceeeeecCCCCCCcceEEEecCcccccccccccCCceeeecchhhhhhhhhhhhccccc-Cceecceeecc-ccCc
Confidence            489999999998875 568999998765531    1345677777788888999999998732 22233333333 2355


Q ss_pred             eeeecCCccccCCCCcEEEEeEEc--cCCCCeEEEEECCEEcc
Q psy12725         76 VIKESFSDETLNPGPNYYFKCIAS--GNPTPEISWYLDGKKLV  116 (119)
Q Consensus        76 ~~~~~~~~~~~~~g~~~~l~C~~~--~~p~~~~~W~~~~~~~~  116 (119)
                      .-...........+..+.+.|.+.  +.|.+.+.|..++....
T Consensus        99 a~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~  141 (741)
T KOG3515|consen   99 ACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAEL  141 (741)
T ss_pred             cccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEee
Confidence            444445555667788899999654  44666899998877543

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.53  E-value=2.9e-07  Score=45.02  Aligned_cols=33  Identities=33%  Similarity=0.782  Sum_probs=29.5

Q ss_pred             ccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         85 TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+..|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus         5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~   37 (85)
T cd05857           5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQ   37 (85)
T ss_pred             EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCC
Confidence            467899999999999999999999999988754

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=98.51  E-value=2.8e-07  Score=46.72  Aligned_cols=33  Identities=24%  Similarity=0.405  Sum_probs=29.7

Q ss_pred             ccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         85 TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+..|+.+.|.|.+.|.|.|.+.|+|||.++..
T Consensus        14 ~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~   46 (101)
T cd05859          14 FANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIE   46 (101)
T ss_pred             EEecCCcEEEEEEEEEeCCCceEEEECCEECcC
Confidence            466788999999999999999999999999864

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=98.50  E-value=3.3e-07  Score=45.08  Aligned_cols=33  Identities=21%  Similarity=0.503  Sum_probs=29.8

Q ss_pred             ccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         85 TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+..|+.+.|.|.+.|.|.|.+.|++++..+..
T Consensus         6 ~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~   38 (86)
T cd05894           6 VVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTE   38 (86)
T ss_pred             EEEcCCEEEEEeeEeecCCCeEEEEECCEECcc
Confidence            467899999999999999999999999998864

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.50  E-value=1.1e-06  Score=44.27  Aligned_cols=57  Identities=21%  Similarity=0.370  Sum_probs=40.9

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeCCccC------------CC------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKDGKPV------------PD------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~~~~~------------~~------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|..... ....+.|+|.....            ..            .....|.|.+++.+|+|.|.|.+..
T Consensus         6 ~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   85 (98)
T cd05716           6 LGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGD   85 (98)
T ss_pred             eCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEccc
Confidence            48999999998653 45678999843110            00            0124689999999999999998876


Q ss_pred             CC
Q psy12725         56 EQ   57 (119)
Q Consensus        56 ~~   57 (119)
                      ..
T Consensus        86 ~~   87 (98)
T cd05716          86 DG   87 (98)
T ss_pred             CC
Confidence            53

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>KOG3515|consensus

Probab=98.50  E-value=7.8e-07  Score=58.56  Aligned_cols=116  Identities=18%  Similarity=0.380  Sum_probs=73.2

Q ss_pred             CccEEEEEEe--ccCCCCeeEEeeCCccCCC-----------------CCCCeEEEecCCCCCCeEEEEEEEcCCCC---
Q psy12725          2 LALKFFTCKY--EGNPVKTISWMKDGKPVPD-----------------HNEPVFRIDSVRKEDKGMYQCVIRNEQES---   59 (119)
Q Consensus         2 g~~~~l~c~~--~~~~~~~v~w~~~~~~~~~-----------------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~---   59 (119)
                      +..+.+.|..  .+.|.+.+.|+.++.....                 ...+.+.+...+..+.|.|+|.+.+....   
T Consensus       112 ~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~  191 (741)
T KOG3515|consen  112 KGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLS  191 (741)
T ss_pred             CCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCcccc
Confidence            4567788855  3447789999987654321                 12345677777889999999999985322   


Q ss_pred             ceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEE-ccCCCCeEEEEECCEEccc
Q psy12725         60 AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        60 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~  117 (119)
                      ......+.+...+....+..........+|+.+.|.|.+ .+.|.+...|+++......
T Consensus       192 ~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~  250 (741)
T KOG3515|consen  192 FAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSE  250 (741)
T ss_pred             ccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchh
Confidence            222233333221112222222222467899999999975 5668889999998776543

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.44  E-value=6.1e-07  Score=42.92  Aligned_cols=29  Identities=34%  Similarity=0.733  Sum_probs=26.0

Q ss_pred             CCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         89 GPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        89 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      |+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~   29 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEE   29 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCC
Confidence            67899999999999999999999988754

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.43  E-value=1.1e-06  Score=45.56  Aligned_cols=56  Identities=20%  Similarity=0.345  Sum_probs=40.1

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeCC--ccC-----------CC------------CCCCeEEEecCCCCCCeEEEEEEE
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKDG--KPV-----------PD------------HNEPVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~~--~~~-----------~~------------~~~~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      .|+.|+|.|..... ....+.|||..  ..+           ..            .....|.|..++.+|.|.|.|.+.
T Consensus        13 ~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~   92 (116)
T cd07706          13 VGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFCALS   92 (116)
T ss_pred             CCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEE
Confidence            48999999998653 45679999731  110           00            112468999999999999999988


Q ss_pred             cC
Q psy12725         55 NE   56 (119)
Q Consensus        55 ~~   56 (119)
                      ..
T Consensus        93 ~~   94 (116)
T cd07706          93 TL   94 (116)
T ss_pred             CC
Confidence            53

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.42  E-value=7.7e-07  Score=44.53  Aligned_cols=42  Identities=26%  Similarity=0.511  Sum_probs=32.4

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      +|.+.. +....+.+|+.+.|.|.+.+.|.|.+.|++++..+.
T Consensus         2 ~P~i~~-~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~   43 (96)
T cd05732           2 QPKITY-LENQTAVELEQITLTCEAEGDPIPEITWRRATRNFS   43 (96)
T ss_pred             Ccccee-cCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccC
Confidence            345542 334567889999999999999999999999875543

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.42  E-value=4.9e-07  Score=42.31  Aligned_cols=25  Identities=32%  Similarity=0.675  Sum_probs=22.8

Q ss_pred             EEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         92 YYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        92 ~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      +.|.|.+.|.|.|.+.|+|||..+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~   25 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLIS   25 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECc
Confidence            4689999999999999999999885

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.41  E-value=1.8e-06  Score=43.99  Aligned_cols=55  Identities=18%  Similarity=0.359  Sum_probs=39.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCc----cC------CC---------------------CCCCeEEEecCCCCCCeEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGK----PV------PD---------------------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~----~~------~~---------------------~~~~~l~~~~~~~~d~g~y   49 (119)
                      .|+.|+|.|.........+.|||...    .+      ..                     .....|.|.+++.+|+|.|
T Consensus         5 ~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsgtY   84 (104)
T cd05720           5 LGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEGYY   84 (104)
T ss_pred             CCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCEEE
Confidence            48999999998655556799997321    11      00                     0113589999999999999


Q ss_pred             EEEEEc
Q psy12725         50 QCVIRN   55 (119)
Q Consensus        50 ~C~~~~   55 (119)
                      .|.+..
T Consensus        85 ~Ca~~~   90 (104)
T cd05720          85 FCSVAS   90 (104)
T ss_pred             EEEEcc
Confidence            998763

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.38  E-value=2e-06  Score=44.06  Aligned_cols=55  Identities=20%  Similarity=0.378  Sum_probs=38.3

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeCCcc-----CC----------------C-C-----------CCCeEEEecCCCCCC
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKDGKP-----VP----------------D-H-----------NEPVFRIDSVRKEDK   46 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~~~~-----~~----------------~-~-----------~~~~l~~~~~~~~d~   46 (119)
                      .|+.|+|.|...+. ....+.|||...-     +.                . .           ....|.|.+++.+|+
T Consensus         5 ~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Ds   84 (107)
T cd07700           5 TNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKPEDS   84 (107)
T ss_pred             CCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCHHHC
Confidence            48999999998653 3457999973211     00                0 0           012489999999999


Q ss_pred             eEEEEEEEc
Q psy12725         47 GMYQCVIRN   55 (119)
Q Consensus        47 g~y~C~~~~   55 (119)
                      |.|.|...+
T Consensus        85 g~YyCa~~~   93 (107)
T cd07700          85 GTYFCMTVG   93 (107)
T ss_pred             EEEEEeEcC
Confidence            999998753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd00096 Ig Immunoglobulin domain

Probab=98.37  E-value=2.8e-06  Score=39.23  Aligned_cols=53  Identities=40%  Similarity=0.790  Sum_probs=40.5

Q ss_pred             EEEEEEeccCCCCeeEEeeCCccCCC-------------CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          5 KFFTCKYEGNPVKTISWMKDGKPVPD-------------HNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         5 ~~l~c~~~~~~~~~v~w~~~~~~~~~-------------~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      +.|.|.+.+.+...+.|++++.....             .....+.+..++..|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            46899998867789999997654321             123568888888899999999998764

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=98.37  E-value=9.9e-07  Score=42.24  Aligned_cols=25  Identities=24%  Similarity=0.521  Sum_probs=22.9

Q ss_pred             EEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         92 YYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        92 ~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      +.|.|.+.|.|.|.+.|+|++..+.
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~   25 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQ   25 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECc
Confidence            4789999999999999999999886

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.37  E-value=2e-06  Score=43.26  Aligned_cols=43  Identities=23%  Similarity=0.468  Sum_probs=33.4

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCCC-eEEEEECCEEccc
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~  117 (119)
                      ||.+.. +....+..|+.+.|.|.+.|.|.| .+.|++++..+..
T Consensus         2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~   45 (98)
T cd05758           2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELES   45 (98)
T ss_pred             CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccC
Confidence            444433 334457889999999999999998 6999999987754

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.37  E-value=1.5e-06  Score=43.28  Aligned_cols=35  Identities=26%  Similarity=0.601  Sum_probs=30.2

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ...+.+|+.+.|.|.+.+.|.|.+.|++++..+..
T Consensus        10 ~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~   44 (92)
T cd05891          10 VVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIEL   44 (92)
T ss_pred             cEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCC
Confidence            44578999999999999999999999999887653

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=98.36  E-value=1e-06  Score=41.96  Aligned_cols=29  Identities=31%  Similarity=0.631  Sum_probs=25.4

Q ss_pred             CCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         89 GPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        89 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      |+.+.|.|.+.+.|.|.+.|+|++..+..
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~   29 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVN   29 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEeccc
Confidence            57899999999999999999999987643

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.36  E-value=6e-06  Score=39.50  Aligned_cols=54  Identities=20%  Similarity=0.519  Sum_probs=34.8

Q ss_pred             cEEEEEEeccC-CC-CeeEEeeCCccCCCC---------CC------CeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          4 LKFFTCKYEGN-PV-KTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         4 ~~~l~c~~~~~-~~-~~v~w~~~~~~~~~~---------~~------~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .++|.|.+.+. |. ..+.|+|+++.+...         ..      +.|.+......+...|+|.+.+..
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            37899999886 54 689999998853211         11      123333334456678999988764

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.34  E-value=1.8e-06  Score=42.28  Aligned_cols=36  Identities=33%  Similarity=0.644  Sum_probs=30.1

Q ss_pred             CccccCCCCcEEEEeEE-ccCCCCeEEEEECCEEccc
Q psy12725         82 SDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~  117 (119)
                      ....+.+|+.+.|.|.+ .+.|.|.+.|++++..+..
T Consensus         4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~   40 (86)
T cd05724           4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNL   40 (86)
T ss_pred             ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCC
Confidence            34457789999999997 6889999999999987754

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.34  E-value=2.1e-06  Score=43.24  Aligned_cols=37  Identities=32%  Similarity=0.583  Sum_probs=29.8

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      +|.+.. +....+.+|+.+.|.|.+.|.|.|.+.|+++
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~   38 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRA   38 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEEC
Confidence            345543 3456788999999999999999999999983

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.34  E-value=3.3e-06  Score=41.91  Aligned_cols=29  Identities=24%  Similarity=0.662  Sum_probs=25.4

Q ss_pred             CCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         88 PGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        88 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      .+..+.|.|.+.+.|.|.+.|++++..+.
T Consensus        18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~   46 (91)
T cd04967          18 DEGKVSLNCRARGSPPPTYRWLMNGTEID   46 (91)
T ss_pred             CCCEEEEEEeeeEcCCCEEEEEECCEECC
Confidence            34679999999999999999999999874

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=98.34  E-value=1.6e-06  Score=41.80  Aligned_cols=28  Identities=39%  Similarity=0.795  Sum_probs=25.0

Q ss_pred             CCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         89 GPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        89 g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      |+.+.|.|.+.|.|.|.+.|++++..+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~   28 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVP   28 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECC
Confidence            6789999999999999999999987664

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.33  E-value=1.6e-06  Score=40.99  Aligned_cols=27  Identities=30%  Similarity=0.865  Sum_probs=23.7

Q ss_pred             cEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         91 NYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        91 ~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+.|.|.+.|.|.|.+.|++++..+..
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~   27 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIP   27 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCC
Confidence            368999999999999999999987754

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.33  E-value=3.7e-06  Score=41.77  Aligned_cols=34  Identities=24%  Similarity=0.404  Sum_probs=29.6

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ...+.+|+.+.|.|.+.+. .|.+.|++++..+..
T Consensus        12 ~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~   45 (91)
T cd05740          12 NQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP   45 (91)
T ss_pred             ccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC
Confidence            4467899999999999999 899999999987653

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.31  E-value=2.1e-06  Score=40.78  Aligned_cols=29  Identities=31%  Similarity=0.634  Sum_probs=25.7

Q ss_pred             CCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         89 GPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        89 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      |+.+.|.|.+.+.|.|.+.|++++..+..
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~   29 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTN   29 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEccc
Confidence            67899999999999999999999988753

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.31  E-value=6.5e-06  Score=42.94  Aligned_cols=56  Identities=16%  Similarity=0.198  Sum_probs=38.7

Q ss_pred             CCccEEEEEEeccCC------CCeeEEeeCCc-----cC----C--------C-----------CCCCeEEEecCCCCCC
Q psy12725          1 MLALKFFTCKYEGNP------VKTISWMKDGK-----PV----P--------D-----------HNEPVFRIDSVRKEDK   46 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~------~~~v~w~~~~~-----~~----~--------~-----------~~~~~l~~~~~~~~d~   46 (119)
                      .|+.|+|.|......      ...+.||+...     .+    .        .           ....+|.|.+++.+|+
T Consensus        13 ~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~~Ds   92 (119)
T cd05712          13 EGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQPEDS   92 (119)
T ss_pred             ccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCChhhC
Confidence            489999999875321      34589997421     10    0        0           1124689999999999


Q ss_pred             eEEEEEEEcC
Q psy12725         47 GMYQCVIRNE   56 (119)
Q Consensus        47 g~y~C~~~~~   56 (119)
                      |.|.|.+...
T Consensus        93 g~Y~C~~~~~  102 (119)
T cd05712          93 GKYFFRVELG  102 (119)
T ss_pred             eEEEEEEEcC
Confidence            9999988764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.30  E-value=2.5e-05  Score=40.29  Aligned_cols=58  Identities=21%  Similarity=0.458  Sum_probs=36.6

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC-------CCC-e------EEEecCCCCCCe-EEEEEEEcCCCCc
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH-------NEP-V------FRIDSVRKEDKG-MYQCVIRNEQESA   60 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~-------~~~-~------l~~~~~~~~d~g-~y~C~~~~~~~~~   60 (119)
                      |+.++|.|.+.+. | ...++|+||++.+...       ... +      |.+. ....|.+ .|.|.+.+.....
T Consensus        21 g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~l~~   95 (111)
T cd05772          21 GQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRTLQA   95 (111)
T ss_pred             CCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCCCCC
Confidence            6778999999886 5 4689999999876421       111 1      2221 2333333 4999998875333

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.29  E-value=2.2e-06  Score=41.41  Aligned_cols=34  Identities=24%  Similarity=0.497  Sum_probs=28.1

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ...+.+|+.+.|.|.+.+. .+.+.|+|+|.++..
T Consensus         3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~   36 (79)
T cd04973           3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGE   36 (79)
T ss_pred             cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCC
Confidence            3456789999999999886 568999999988764

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=98.28  E-value=1.9e-06  Score=41.28  Aligned_cols=26  Identities=31%  Similarity=0.686  Sum_probs=23.1

Q ss_pred             EEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         92 YYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        92 ~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      +.|.|.+.|.|.|.+.|+|++..+..
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~   26 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTH   26 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCC
Confidence            47899999999999999999988753

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.28  E-value=2.5e-06  Score=42.82  Aligned_cols=36  Identities=31%  Similarity=0.709  Sum_probs=28.6

Q ss_pred             CCccccCCCCcEEEEeEEccCCC-CeEEEEE-CCEEcc
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPT-PEISWYL-DGKKLV  116 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~-~~~~~~  116 (119)
                      +....+..|+.+.|.|.+.|.|. |.+.|++ ++..+.
T Consensus         7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~   44 (96)
T cd05865           7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLT   44 (96)
T ss_pred             CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCcc
Confidence            33445788999999999999985 6999997 776543

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.28  E-value=1.6e-06  Score=41.70  Aligned_cols=25  Identities=32%  Similarity=0.757  Sum_probs=22.3

Q ss_pred             EEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         92 YYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        92 ~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      +.|.|.+.|.|.|.+.|++++..+.
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~   25 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFD   25 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECC
Confidence            4689999999999999999998864

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.28  E-value=1.8e-06  Score=41.49  Aligned_cols=26  Identities=31%  Similarity=0.846  Sum_probs=23.1

Q ss_pred             EEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         92 YYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        92 ~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      +.|.|.+.|.|.|.+.|+|+|..+..
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~   26 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSD   26 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCC
Confidence            47899999999999999999998754

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.28  E-value=1.5e-06  Score=41.83  Aligned_cols=25  Identities=40%  Similarity=0.816  Sum_probs=22.4

Q ss_pred             EEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         92 YYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        92 ~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      +.|.|.+.|.|.|.+.|+|++..+.
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~   25 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFD   25 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECC
Confidence            4689999999999999999998874

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.25  E-value=2.1e-06  Score=40.52  Aligned_cols=25  Identities=32%  Similarity=0.676  Sum_probs=22.8

Q ss_pred             EEEeEEccCCCCeEEEEECCEEccc
Q psy12725         93 YFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        93 ~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+.|.+.|.|.|.+.|+|||.++..
T Consensus         2 ~~~c~v~G~P~P~v~W~k~g~~l~~   26 (70)
T cd05864           2 KIPVKYYGYPPPEVKWYKNGQLIVL   26 (70)
T ss_pred             EEEeEEEEeCCCEEEEEECCEECCC
Confidence            6889999999999999999998864

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=98.24  E-value=6.6e-06  Score=37.89  Aligned_cols=50  Identities=20%  Similarity=0.384  Sum_probs=34.7

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      |..|+|+|-...   ..+.|++++..+.. .+..+...+-. ++.|.|.|.+.+.
T Consensus         7 GTtVtlTCP~~~---~~i~W~~n~~~~~g-~~~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           7 GTTVTVTCPLSG---DDIKWKKNDQVSQG-SDEKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             ccEEEEECCCCC---CCceEEeCCccCCC-CCceEEeeccC-CCCceEEEEeCCC
Confidence            789999996542   23899999876654 33344444444 8899999998644

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.23  E-value=3.9e-06  Score=43.11  Aligned_cols=29  Identities=24%  Similarity=0.464  Sum_probs=26.2

Q ss_pred             CCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         88 PGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        88 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      .|..+.|.|.+.|.|.+.+.|+++|..+.
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~   50 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLD   50 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECC
Confidence            46789999999999999999999998875

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.23  E-value=2.6e-06  Score=40.32  Aligned_cols=26  Identities=31%  Similarity=0.658  Sum_probs=23.0

Q ss_pred             EEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         92 YYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        92 ~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      +.|.|.+.|.|.|.+.|+|+|..+..
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~   26 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISE   26 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCC
Confidence            46899999999999999999998864

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=98.23  E-value=3.2e-06  Score=40.44  Aligned_cols=26  Identities=27%  Similarity=0.547  Sum_probs=23.2

Q ss_pred             EEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         92 YYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        92 ~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      +.|.|.+.|.|.|.+.|+|++..+..
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~   26 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTY   26 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCC
Confidence            47899999999999999999998863

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.23  E-value=2.7e-06  Score=40.92  Aligned_cols=25  Identities=36%  Similarity=0.765  Sum_probs=22.1

Q ss_pred             EEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         92 YYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        92 ~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      +.|.|.+.|.|.|.+.|+|++..+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~   25 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFN   25 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEcc
Confidence            4689999999999999999998763

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.22  E-value=4.2e-06  Score=41.29  Aligned_cols=29  Identities=17%  Similarity=0.396  Sum_probs=25.8

Q ss_pred             CCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         89 GPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        89 g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      |+.+.|.|.+.|.|++.+.|++++..+..
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~   29 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINP   29 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCC
Confidence            67899999999999999999999987753

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.20  E-value=3.2e-06  Score=40.12  Aligned_cols=26  Identities=27%  Similarity=0.535  Sum_probs=22.9

Q ss_pred             EEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         92 YYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        92 ~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      +.|.|.+.|.|.|.+.|+|+|.++..
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~   26 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAE   26 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCC
Confidence            36899999999999999999998764

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.19  E-value=3.4e-05  Score=38.47  Aligned_cols=56  Identities=23%  Similarity=0.497  Sum_probs=36.6

Q ss_pred             CccEEEEEEeccC-CC-CeeEEeeCCccCCC---------CCCCeE---EEecCCCCCCeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGN-PV-KTISWMKDGKPVPD---------HNEPVF---RIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~-~~-~~v~w~~~~~~~~~---------~~~~~l---~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      |+.++|.|.+.|. |. ..+.|++++.....         ..+...   ....+...+...|+|.+.+..
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            5678999999996 54 38999999853211         111111   223344557789999998864

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.18  E-value=3.5e-06  Score=40.76  Aligned_cols=31  Identities=45%  Similarity=0.880  Sum_probs=27.2

Q ss_pred             cCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         86 LNPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        86 ~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      ...|+.+.|.|.+.+.|.|.+.|++++..+.
T Consensus         6 ~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~   36 (82)
T cd05856           6 RPVGSSVRLKCVASGNPRPDITWLKDNKPLT   36 (82)
T ss_pred             ccCCCeEEEEEEeeEeCCCcEEEEECCcCCc
Confidence            4568999999999999999999999988664

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.18  E-value=4.4e-05  Score=38.18  Aligned_cols=56  Identities=18%  Similarity=0.432  Sum_probs=36.1

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC---------CCCeE---EEecCCCCCCeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH---------NEPVF---RIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~---------~~~~l---~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      |+.++|.|.+.+. | ...++|+++++.+...         .+.+.   ....+...+...|.|++.+..
T Consensus        14 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~   83 (94)
T cd05766          14 SHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS   83 (94)
T ss_pred             CCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence            6789999999986 5 3488999998875431         11111   111233445567899888864

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.15  E-value=6.5e-06  Score=39.16  Aligned_cols=27  Identities=37%  Similarity=0.648  Sum_probs=23.6

Q ss_pred             cEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         91 NYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        91 ~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+.|.|.+.|.|.|.+.|+++|..+..
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~   27 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKL   27 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCC
Confidence            368999999999999999999998743

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.15  E-value=1.1e-05  Score=42.04  Aligned_cols=55  Identities=20%  Similarity=0.396  Sum_probs=38.0

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeC--CccC-------------------CC-------C--CCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKD--GKPV-------------------PD-------H--NEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~--~~~~-------------------~~-------~--~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.|+|.|...+..  ...+.|||-  ++..                   ..       .  ....|.|.+++.+|+|.
T Consensus        11 ~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsa~   90 (117)
T cd04981          11 PGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPEDTAV   90 (117)
T ss_pred             CCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHHHCEE
Confidence            489999999875432  456899972  1111                   00       0  01258999999999999


Q ss_pred             EEEEEEc
Q psy12725         49 YQCVIRN   55 (119)
Q Consensus        49 y~C~~~~   55 (119)
                      |.|....
T Consensus        91 YyCa~~~   97 (117)
T cd04981          91 YYCARGL   97 (117)
T ss_pred             EEEEEEc
Confidence            9998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.15  E-value=5.2e-05  Score=37.83  Aligned_cols=56  Identities=20%  Similarity=0.393  Sum_probs=36.8

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC--------CCCeE---EEecCCCCCCeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH--------NEPVF---RIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~--------~~~~l---~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      |+..+|.|.+.+. | ...+.|.|||+.+...        .+.+.   ....+...+...|.|.+.+..
T Consensus        15 g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~   83 (93)
T cd05770          15 GKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS   83 (93)
T ss_pred             CCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence            4567899999985 4 5589999999876421        11111   122344566678999998864

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.14  E-value=3.5e-06  Score=39.59  Aligned_cols=26  Identities=35%  Similarity=0.816  Sum_probs=22.7

Q ss_pred             EEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         92 YYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        92 ~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      +.|.|.+.|.|.|.+.|+|++..+..
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~   26 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTE   26 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCC
Confidence            46899999999999999999987753

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.13  E-value=5.6e-06  Score=39.46  Aligned_cols=25  Identities=44%  Similarity=0.777  Sum_probs=22.4

Q ss_pred             EEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         92 YYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        92 ~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      ++|.|.+.|.|.|.+.|++++..+.
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~   25 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVD   25 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECc
Confidence            3689999999999999999998775

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=98.13  E-value=5.6e-06  Score=40.01  Aligned_cols=25  Identities=28%  Similarity=0.723  Sum_probs=22.0

Q ss_pred             EEEeEEccCCCCeEEEEECCEEccc
Q psy12725         93 YFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        93 ~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+.|.+.|.|.|.++|+|||..|..
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~   26 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNE   26 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCC
Confidence            3678899999999999999999864

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>smart00406 IGv Immunoglobulin V-Type

Probab=98.10  E-value=1e-05  Score=38.94  Aligned_cols=50  Identities=26%  Similarity=0.569  Sum_probs=33.0

Q ss_pred             cEEEEEEeccCCCC--eeEEeeCCc--cC------C---------C------------CCCCeEEEecCCCCCCeEEEEE
Q psy12725          4 LKFFTCKYEGNPVK--TISWMKDGK--PV------P---------D------------HNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         4 ~~~l~c~~~~~~~~--~v~w~~~~~--~~------~---------~------------~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      .|+|.|.+......  .+.|++...  ..      .         .            .....|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            47899998765443  789987431  10      0         0            0114578888899999999996


Q ss_pred             E
Q psy12725         53 I   53 (119)
Q Consensus        53 ~   53 (119)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            3

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.08  E-value=1.1e-05  Score=39.76  Aligned_cols=37  Identities=27%  Similarity=0.462  Sum_probs=29.3

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcccC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  118 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~  118 (119)
                      |....+..|+.+.|.|.+.+ +.+.+.|++||.++..+
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~   39 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPE   39 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCC
Confidence            33456778999999999754 56789999999988653

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.07  E-value=1.7e-05  Score=40.15  Aligned_cols=28  Identities=25%  Similarity=0.493  Sum_probs=22.8

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVP   29 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~   29 (119)
                      ++.++|.|.+.+. | ...+.|++|+..+.
T Consensus        17 ~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~   46 (100)
T cd07699          17 SGKATLVCLINDFYPGFATVQWKVDGATVS   46 (100)
T ss_pred             CCCcEEEEEEEeEECCCCEEEEEECCEECc
Confidence            5678999999885 5 56899999998763

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.05  E-value=9.3e-06  Score=39.47  Aligned_cols=26  Identities=31%  Similarity=0.755  Sum_probs=22.4

Q ss_pred             EEEeEEccCCCCeEEEEECCEEcccC
Q psy12725         93 YFKCIASGNPTPEISWYLDGKKLVNA  118 (119)
Q Consensus        93 ~l~C~~~~~p~~~~~W~~~~~~~~~~  118 (119)
                      .+.|.+.|.|.|.++|+|+|..+..+
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~   27 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNES   27 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCC
Confidence            36788999999999999999988653

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>PHA02633 hypothetical protein; Provisional

Probab=98.05  E-value=3.6e-05  Score=34.96  Aligned_cols=41  Identities=24%  Similarity=0.318  Sum_probs=30.9

Q ss_pred             CCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725         28 VPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus        28 ~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      ++.+....|.|.++..+|+|.|.|.+.+..-....++.++|
T Consensus        12 ip~~~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V   52 (63)
T PHA02633         12 ILIDNCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCI   52 (63)
T ss_pred             ccccccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEE
Confidence            34446678899999999999999999987544444555555

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.05  E-value=8.2e-05  Score=39.86  Aligned_cols=57  Identities=12%  Similarity=0.390  Sum_probs=35.7

Q ss_pred             CccEEEEEEeccC-CC-CeeEEeeCCccCCC---------------CCC------CeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          2 LALKFFTCKYEGN-PV-KTISWMKDGKPVPD---------------HNE------PVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         2 g~~~~l~c~~~~~-~~-~~v~w~~~~~~~~~---------------~~~------~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      |+.+.|.|.+.+. |. ..|.|++++.....               ..+      +.|.+......+...|.|.+.+...
T Consensus        53 ~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l  132 (139)
T cd05771          53 EEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL  132 (139)
T ss_pred             CCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence            6778999999985 54 58999998753110               111      2233332233345689999988643

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=98.04  E-value=6.1e-05  Score=35.04  Aligned_cols=48  Identities=23%  Similarity=0.559  Sum_probs=35.4

Q ss_pred             ccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          3 ALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         3 ~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      +.|.|.|...    .+|.|++ |..+....+..+.+-.+.....|.|.|.+.+
T Consensus         7 ~~V~L~C~~~----tsi~W~k-G~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           7 GKVFLKCNGA----TNITWKK-GKEILEVSNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             ceEEEEecCC----CcEEEec-CcccccccccEEeccCcccCCCcceEecCcc
Confidence            4688999652    4699999 4444333467777777778889999998866

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.04  E-value=4.8e-05  Score=37.48  Aligned_cols=57  Identities=23%  Similarity=0.419  Sum_probs=37.5

Q ss_pred             CccEEEEEEec-cCCCCeeEEeeCCccCCC---------CCC-----CeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          2 LALKFFTCKYE-GNPVKTISWMKDGKPVPD---------HNE-----PVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         2 g~~~~l~c~~~-~~~~~~v~w~~~~~~~~~---------~~~-----~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      |+.+.+.|.+. ++|.+.++|+.++..+..         ..+     +.|.+..-...+...+.|.+.+...
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~   85 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL   85 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence            46899999764 568899999998866611         111     2344443334466789999998753

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.04  E-value=9.4e-05  Score=37.01  Aligned_cols=56  Identities=23%  Similarity=0.526  Sum_probs=35.6

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC---------CCCeE---EEecCCCCCCeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH---------NEPVF---RIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~---------~~~~l---~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      |+.++|.|.+.|. | ...++|.+|+..+...         ...+.   ....+...+...|+|.+.+..
T Consensus        15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~~   84 (94)
T cd05767          15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHWG   84 (94)
T ss_pred             CCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeCC
Confidence            4567999999985 5 4589999999876431         11111   111223445567999988764

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.03  E-value=3e-05  Score=38.94  Aligned_cols=26  Identities=15%  Similarity=0.354  Sum_probs=20.9

Q ss_pred             CCccEEEEEEeccC--C-CCeeEEeeCCc
Q psy12725          1 MLALKFFTCKYEGN--P-VKTISWMKDGK   26 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~-~~~v~w~~~~~   26 (119)
                      +|+.++|.|.+.+.  | ...++|.|++.
T Consensus        13 ~~~~~tLtC~v~gf~yP~~i~v~W~r~~~   41 (96)
T cd07696          13 LTKSVKLTCLVTNLTSPEGVNVTWTRGSG   41 (96)
T ss_pred             cCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence            37889999999987  4 44789999863

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=98.03  E-value=2.2e-05  Score=39.11  Aligned_cols=36  Identities=42%  Similarity=0.864  Sum_probs=28.5

Q ss_pred             cCCccccCCCCcEEEEeEEccCCCCeEEEEE-CCEEcc
Q psy12725         80 SFSDETLNPGPNYYFKCIASGNPTPEISWYL-DGKKLV  116 (119)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~-~~~~~~  116 (119)
                      .+....+..|+.+.|.|.+.|.|. .+.|++ ++..+.
T Consensus         6 ~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~   42 (92)
T cd05866           6 SLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIV   42 (92)
T ss_pred             EecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEec
Confidence            344456788999999999999887 899997 566554

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.02  E-value=7.4e-06  Score=38.71  Aligned_cols=25  Identities=40%  Similarity=0.731  Sum_probs=21.6

Q ss_pred             EEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         92 YYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        92 ~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      +.|.|.+.|.|.|.+.|++++..+.
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~   25 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLS   25 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCC
Confidence            4689999999999999999987654

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.01  E-value=2.1e-05  Score=37.66  Aligned_cols=34  Identities=29%  Similarity=0.820  Sum_probs=29.4

Q ss_pred             cccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         84 ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ..+.+|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~   42 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINS   42 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeee
Confidence            3477899999999999888889999999988764

...

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=97.99  E-value=1.3e-05  Score=39.65  Aligned_cols=23  Identities=26%  Similarity=0.699  Sum_probs=21.2

Q ss_pred             CCcEEEEeEEccCCCCeEEEEEC
Q psy12725         89 GPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        89 g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      |+.+.|.|.+.+.|.|.++|+|+
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~   23 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKH   23 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEe
Confidence            57899999999999999999985

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.98  E-value=6.9e-05  Score=37.48  Aligned_cols=55  Identities=15%  Similarity=0.352  Sum_probs=34.6

Q ss_pred             ccEEEEEEeccC-C-CCeeEEeeCCccCCCC---------CC------CeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          3 ALKFFTCKYEGN-P-VKTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         3 ~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~---------~~------~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      +.++|.|.+.+. | ...|+|++++..+...         .+      +.|.+..-...+...|.|.+.+..
T Consensus        15 ~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~   86 (94)
T cd05847          15 ETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG   86 (94)
T ss_pred             CCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence            458999999985 5 4689999998875221         11      122222112234567999998864

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=97.97  E-value=1.4e-05  Score=38.05  Aligned_cols=26  Identities=35%  Similarity=0.758  Sum_probs=22.4

Q ss_pred             EEEEeEEcc-CCCCeEEEEECCEEccc
Q psy12725         92 YYFKCIASG-NPTPEISWYLDGKKLVN  117 (119)
Q Consensus        92 ~~l~C~~~~-~p~~~~~W~~~~~~~~~  117 (119)
                      +.|.|.+.+ .|.|.+.|++++..+..
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~   27 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNR   27 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccc
Confidence            368999998 89999999999987754

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.97  E-value=0.00011  Score=36.80  Aligned_cols=65  Identities=22%  Similarity=0.345  Sum_probs=39.4

Q ss_pred             cEEEEEEe-ccCCCCeeEEeeCCccC------CCCCC-----CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          4 LKFFTCKY-EGNPVKTISWMKDGKPV------PDHNE-----PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         4 ~~~l~c~~-~~~~~~~v~w~~~~~~~------~~~~~-----~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      ...+.|.+ .++|.+.|+|+++....      ....+     +.|.+......+...|+|++.+..........+.+
T Consensus        17 ~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~L   93 (95)
T cd05719          17 VTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVTL   93 (95)
T ss_pred             cEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEe
Confidence            34678998 56799999999972111      00111     23444433445566899999998655555555444

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=97.95  E-value=1.4e-05  Score=39.56  Aligned_cols=26  Identities=42%  Similarity=0.929  Sum_probs=23.1

Q ss_pred             CCcEEEEeEEccCCCCeEEEEECCEE
Q psy12725         89 GPNYYFKCIASGNPTPEISWYLDGKK  114 (119)
Q Consensus        89 g~~~~l~C~~~~~p~~~~~W~~~~~~  114 (119)
                      |+.+.|.|.+.+.|.|.+.|++++..
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~   26 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQ   26 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCc
Confidence            67899999999999999999998764

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=97.94  E-value=2e-05  Score=37.63  Aligned_cols=25  Identities=28%  Similarity=0.786  Sum_probs=22.2

Q ss_pred             EEEeEEccCCCCeEEEEECCEEccc
Q psy12725         93 YFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        93 ~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .|.|.+.|.|.|.+.|+|++..+..
T Consensus         2 ~L~C~v~g~P~p~v~W~k~~~~l~~   26 (76)
T cd05736           2 SLRCHAEGIPLPRLTWLKNGMDITP   26 (76)
T ss_pred             EeEeEeeecCCCEEEEEECCEECCC
Confidence            6899999999999999999988754

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.94  E-value=7.2e-05  Score=37.79  Aligned_cols=41  Identities=20%  Similarity=0.276  Sum_probs=31.0

Q ss_pred             eeecCCccccCCCCcEEEEeEEccC-CCCe--EEEEECCEEccc
Q psy12725         77 IKESFSDETLNPGPNYYFKCIASGN-PTPE--ISWYLDGKKLVN  117 (119)
Q Consensus        77 ~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~--~~W~~~~~~~~~  117 (119)
                      +.+.+....+.+|+.++|.|.+.+. |.+.  +.||+++..+..
T Consensus         4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~   47 (100)
T cd05755           4 VELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSR   47 (100)
T ss_pred             EEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEccc
Confidence            3444445567899999999998765 6664  799999988864

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=97.92  E-value=3.2e-05  Score=36.71  Aligned_cols=28  Identities=39%  Similarity=0.859  Sum_probs=23.7

Q ss_pred             CCcEEEEeEEccCCCCeEEEEE-CCEEcc
Q psy12725         89 GPNYYFKCIASGNPTPEISWYL-DGKKLV  116 (119)
Q Consensus        89 g~~~~l~C~~~~~p~~~~~W~~-~~~~~~  116 (119)
                      |+.+.|.|.+.+.|.|.+.|++ ++..+.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~   29 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLIS   29 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEec
Confidence            6789999999999999999997 666654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.92  E-value=9.5e-05  Score=37.04  Aligned_cols=65  Identities=14%  Similarity=0.239  Sum_probs=40.0

Q ss_pred             cEEEEEEec-cCCCCeeEEeeCCccCC------CCCC-----CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          4 LKFFTCKYE-GNPVKTISWMKDGKPVP------DHNE-----PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         4 ~~~l~c~~~-~~~~~~v~w~~~~~~~~------~~~~-----~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .+.+.|.+. +.|.+.|+|+++.....      ...+     +.|.+......|...|.|++.+........+.+++
T Consensus        17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~l   93 (95)
T cd07703          17 VPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVTL   93 (95)
T ss_pred             cEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEE
Confidence            457899875 56889999998732110      0111     23444333445566899999998655555555554

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.91  E-value=0.00033  Score=44.10  Aligned_cols=79  Identities=19%  Similarity=0.378  Sum_probs=56.4

Q ss_pred             eEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCC---eEEEEEC
Q psy12725         35 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP---EISWYLD  111 (119)
Q Consensus        35 ~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~  111 (119)
                      .|.|..++...+|.|+-...+..+.......++|.. +.+|.+.+.++  .+.+|+...-.|.+....++   .+.|+.|
T Consensus       199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~-yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d  275 (486)
T PHA03273        199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVST-YNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKN  275 (486)
T ss_pred             ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEE-ecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            488888999999999876655433323333444322 45777666544  57899999999998776444   7999999


Q ss_pred             CEEcc
Q psy12725        112 GKKLV  116 (119)
Q Consensus       112 ~~~~~  116 (119)
                      |.++.
T Consensus       276 g~~V~  280 (486)
T PHA03273        276 AKEVD  280 (486)
T ss_pred             Ceecc
Confidence            99887

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=97.90  E-value=4.6e-05  Score=37.00  Aligned_cols=31  Identities=45%  Similarity=0.877  Sum_probs=27.3

Q ss_pred             cCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         86 LNPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        86 ~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      +..|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus         6 ~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~   36 (85)
T cd05729           6 VPAGSTVRLKCPASGNPRPTITWLKDGKPFK   36 (85)
T ss_pred             ecCCCcEEEEEEcCCCCCCeEEEEECCEECc
Confidence            4578999999999999989999999988765

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=97.90  E-value=3.8e-05  Score=37.98  Aligned_cols=23  Identities=26%  Similarity=0.641  Sum_probs=21.0

Q ss_pred             CCcEEEEeEEccCCCCeEEEEEC
Q psy12725         89 GPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        89 g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      |+.+.|.|.+.+.|.|.+.|+++
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~   23 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKH   23 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEe
Confidence            67899999999999999999984

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=97.90  E-value=2.1e-05  Score=37.99  Aligned_cols=24  Identities=38%  Similarity=0.801  Sum_probs=21.7

Q ss_pred             CCcEEEEeEEccCCCCeEEEEECC
Q psy12725         89 GPNYYFKCIASGNPTPEISWYLDG  112 (119)
Q Consensus        89 g~~~~l~C~~~~~p~~~~~W~~~~  112 (119)
                      |+.+.|.|.+.+.|.|.+.|++++
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~   24 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQV   24 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecC
Confidence            678999999999999999999873

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.90  E-value=2.2e-05  Score=39.37  Aligned_cols=31  Identities=23%  Similarity=0.437  Sum_probs=26.9

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEECCE
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYLDGK  113 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~  113 (119)
                      +..+..|+.+.|.|.+.+.|.|.+.|++++.
T Consensus         6 ~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~   36 (95)
T cd05882           6 DETVAVGGTVTLKCGVKEHDNSSLQWSNTAQ   36 (95)
T ss_pred             cEEEecCCcEEEEEEEeCCCCCeEEEeccCc
Confidence            4467899999999999999999999998764

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=97.90  E-value=2.4e-05  Score=36.73  Aligned_cols=25  Identities=52%  Similarity=0.918  Sum_probs=21.7

Q ss_pred             EEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         92 YYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        92 ~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      +.|.|.+.|.|.|.+.|++++..+.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~   25 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELP   25 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECC
Confidence            4689999999999999999987654

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=97.89  E-value=4.4e-05  Score=37.43  Aligned_cols=27  Identities=33%  Similarity=0.578  Sum_probs=22.9

Q ss_pred             CcEEEEeEEccCCCC--eEEEEECCEEcc
Q psy12725         90 PNYYFKCIASGNPTP--EISWYLDGKKLV  116 (119)
Q Consensus        90 ~~~~l~C~~~~~p~~--~~~W~~~~~~~~  116 (119)
                      +.+.|.|.+.|.|.|  .+.|+++|..+.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~   29 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPID   29 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEcc
Confidence            368999999999877  589999998874

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.89  E-value=0.00011  Score=35.75  Aligned_cols=54  Identities=24%  Similarity=0.484  Sum_probs=36.1

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC---------CC------CeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~---------~~------~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      ++.++|.|.+.+. | ...|.|++++..+...         .+      +.+.+.   ..+...|.|.+.+...
T Consensus         8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            6789999999886 5 3479999998766431         11      123332   4455579998887653

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.88  E-value=0.0005  Score=43.02  Aligned_cols=79  Identities=14%  Similarity=0.260  Sum_probs=57.6

Q ss_pred             eEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCC---eEEEEEC
Q psy12725         35 VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP---EISWYLD  111 (119)
Q Consensus        35 ~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~  111 (119)
                      .|.|..++...+|.|+-...+..........++|.. +.+|.+.+.+.  .+.+|+...-.|.+....++   .+.|+.|
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~-yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n  259 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRM-FRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFEG  259 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEE-ecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            388999999999999998776554333233344332 46777766544  47789999999998776444   6999999


Q ss_pred             CEEcc
Q psy12725        112 GKKLV  116 (119)
Q Consensus       112 ~~~~~  116 (119)
                      +..+.
T Consensus       260 g~~V~  264 (466)
T PHA03270        260 GDEVF  264 (466)
T ss_pred             Ccccc
Confidence            99875

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=97.87  E-value=2.4e-05  Score=36.69  Aligned_cols=25  Identities=28%  Similarity=0.724  Sum_probs=21.3

Q ss_pred             EEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         92 YYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        92 ~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      +.|.|.+.|.|.|.+.|++++..+.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~   25 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELP   25 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCC
Confidence            4789999999999999999876553

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.86  E-value=5.9e-05  Score=36.79  Aligned_cols=34  Identities=21%  Similarity=0.436  Sum_probs=26.8

Q ss_pred             ccccCCCCcEEEEeEEcc-CCCCeEEEEECCEEcc
Q psy12725         83 DETLNPGPNYYFKCIASG-NPTPEISWYLDGKKLV  116 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~  116 (119)
                      ...+.+|+.++|.|.+.+ .+.+.+.|+++|..+.
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~   42 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKK   42 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcc
Confidence            335789999999999754 4556899999998663

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=97.86  E-value=4.7e-05  Score=36.86  Aligned_cols=26  Identities=27%  Similarity=0.730  Sum_probs=21.7

Q ss_pred             EEEEeEEc-cCCCCeEEEEECCEEccc
Q psy12725         92 YYFKCIAS-GNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        92 ~~l~C~~~-~~p~~~~~W~~~~~~~~~  117 (119)
                      +.|.|... +.|++.+.||++++.+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~   28 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKG   28 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCC
Confidence            68999864 568889999999999864

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=97.83  E-value=5.1e-05  Score=37.76  Aligned_cols=35  Identities=37%  Similarity=0.803  Sum_probs=27.1

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEE-CCEEcc
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYL-DGKKLV  116 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~-~~~~~~  116 (119)
                      +....+..|+.+.|.|.+.|.| +.+.|++ ++..+.
T Consensus         7 p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~   42 (92)
T cd04977           7 PSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLV   42 (92)
T ss_pred             cCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEec
Confidence            3445678899999999999986 4999997 565443

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=97.83  E-value=3.6e-05  Score=37.95  Aligned_cols=32  Identities=19%  Similarity=0.510  Sum_probs=26.4

Q ss_pred             cccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         84 ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      ..+.+|+.+.|.|.+.+ |.+.+.|++++..+.
T Consensus         6 ~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~   37 (89)
T cd04979           6 VTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQ   37 (89)
T ss_pred             EEEECCCcEEEEEeCCC-CCceEEEEECCcccc
Confidence            34678999999999876 778999999987654

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=97.82  E-value=6.6e-05  Score=36.69  Aligned_cols=27  Identities=26%  Similarity=0.579  Sum_probs=22.9

Q ss_pred             CcEEEEeEEccCCCC--eEEEEECCEEcc
Q psy12725         90 PNYYFKCIASGNPTP--EISWYLDGKKLV  116 (119)
Q Consensus        90 ~~~~l~C~~~~~p~~--~~~W~~~~~~~~  116 (119)
                      +.+.|.|.+.+.|.|  .+.|+++|..+.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~   29 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPID   29 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEee
Confidence            468999999999877  679999998875

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=97.81  E-value=2.6e-05  Score=37.16  Aligned_cols=23  Identities=43%  Similarity=0.967  Sum_probs=20.1

Q ss_pred             EEEEeEEccCCCCeEEEEECCEE
Q psy12725         92 YYFKCIASGNPTPEISWYLDGKK  114 (119)
Q Consensus        92 ~~l~C~~~~~p~~~~~W~~~~~~  114 (119)
                      +.|.|.+.|.|.|.+.|++++..
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~   23 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGT   23 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCc
Confidence            36899999999999999998763

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.78  E-value=2.1e-05  Score=39.32  Aligned_cols=32  Identities=22%  Similarity=0.379  Sum_probs=26.5

Q ss_pred             cccCCCCcEEEEeEEcc-----CCCCeEEEEECCEEc
Q psy12725         84 ETLNPGPNYYFKCIASG-----NPTPEISWYLDGKKL  115 (119)
Q Consensus        84 ~~~~~g~~~~l~C~~~~-----~p~~~~~W~~~~~~~  115 (119)
                      ..+.+|+.+.|.|.+.+     .|.+.+.|||++..+
T Consensus         9 ~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~   45 (94)
T cd05756           9 SYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKT   45 (94)
T ss_pred             EEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCC
Confidence            34668999999999888     678899999998653

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=97.77  E-value=8.4e-05  Score=33.52  Aligned_cols=29  Identities=41%  Similarity=0.873  Sum_probs=24.5

Q ss_pred             CCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         88 PGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        88 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      +|+.+.|.|.+.+.+.+.+.|++++..+.
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~   29 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP   29 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC
Confidence            47889999998888888999999887654

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.76  E-value=0.00042  Score=34.82  Aligned_cols=55  Identities=16%  Similarity=0.208  Sum_probs=35.7

Q ss_pred             CCccEEEEEEeccC-CC--CeeEEeeCCccCCCC-------------CCCeEEEecCCCCCCe-EEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGN-PV--KTISWMKDGKPVPDH-------------NEPVFRIDSVRKEDKG-MYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~--~~v~w~~~~~~~~~~-------------~~~~l~~~~~~~~d~g-~y~C~~~~~   56 (119)
                      +|+.+++.|.+.+. |.  ..+.|++....+..+             ....+.+. .+++|.| .|+|.+.-.
T Consensus        14 ~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtft-ptreD~g~~fsC~A~L~   85 (99)
T cd07689          14 EGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFT-PTIEDIGKVLVCRAKLH   85 (99)
T ss_pred             CCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEe-cchhhCCcEEEEEEEEe
Confidence            48999999999754 43  579999866544321             11334443 3566655 899998743

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.75  E-value=0.00027  Score=35.93  Aligned_cols=27  Identities=26%  Similarity=0.664  Sum_probs=21.7

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPV   28 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~   28 (119)
                      |+.++|.|.+.|. | ...+.|++++..+
T Consensus        16 ~~~~tL~C~a~gFyP~~i~v~W~k~g~~~   44 (102)
T cd05768          16 QETATLTCLVKGFSPSDIFVKWLQNGQPL   44 (102)
T ss_pred             CCceEEEEEEeeEeCCCCEEEEEECCEEC
Confidence            5689999999986 4 3478999998765

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=97.74  E-value=0.00014  Score=36.63  Aligned_cols=43  Identities=28%  Similarity=0.498  Sum_probs=31.2

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCCC-eEEEEECCEEccc
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~  117 (119)
                      ||.+ .......+..|+.+.|.|.+.+.|+| .+.|..++..+..
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~   45 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLES   45 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccC
Confidence            4554 33344567899999999999888877 6788877665543

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.72  E-value=0.0013  Score=41.87  Aligned_cols=81  Identities=14%  Similarity=0.175  Sum_probs=56.3

Q ss_pred             CeEEEecCCCCCCeEEEEEEEcCCC-CceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCC---eEEEE
Q psy12725         34 PVFRIDSVRKEDKGMYQCVIRNEQE-SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP---EISWY  109 (119)
Q Consensus        34 ~~l~~~~~~~~d~g~y~C~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~  109 (119)
                      ..|.|..+...++|.|+-.+.+... .......+.|.. +.+|.+.+.+.  .+.+|+...-.|.+....++   .+.|+
T Consensus       289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~-yr~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~SvrlrWf  365 (566)
T PHA03269        289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMS-YKRPNITVIGD--PVLLGNPYAAYCKVNKYYPPHSVIVKWT  365 (566)
T ss_pred             cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEE-ecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEE
Confidence            5689999999999999877654321 222223333333 45676665543  57899999999998776443   79999


Q ss_pred             ECCEEccc
Q psy12725        110 LDGKKLVN  117 (119)
Q Consensus       110 ~~~~~~~~  117 (119)
                      .|+..+..
T Consensus       366 ~ng~~V~~  373 (566)
T PHA03269        366 SNFGNIGK  373 (566)
T ss_pred             eCCcccCc
Confidence            99888763

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.69  E-value=0.00024  Score=36.66  Aligned_cols=33  Identities=30%  Similarity=0.646  Sum_probs=26.2

Q ss_pred             ccCCCCcEEEEeEEccCCC--CeEEEEECCEEccc
Q psy12725         85 TLNPGPNYYFKCIASGNPT--PEISWYLDGKKLVN  117 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~~~p~--~~~~W~~~~~~~~~  117 (119)
                      ....|+.++|.|.+.+..+  ..+.|++||..+..
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~   51 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSA   51 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcc
Confidence            3456788999999988743  38999999998753

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=97.69  E-value=0.00014  Score=35.27  Aligned_cols=26  Identities=42%  Similarity=0.908  Sum_probs=21.6

Q ss_pred             EEEEeEEcc-CCCCeEEEEECCEEccc
Q psy12725         92 YYFKCIASG-NPTPEISWYLDGKKLVN  117 (119)
Q Consensus        92 ~~l~C~~~~-~p~~~~~W~~~~~~~~~  117 (119)
                      +.|.|.+.+ .|.+.+.|+++|..+..
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~   28 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDG   28 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccC
Confidence            579999977 57789999999998753

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=97.67  E-value=0.00017  Score=35.24  Aligned_cols=33  Identities=27%  Similarity=0.587  Sum_probs=26.3

Q ss_pred             ccccCCCCcEEEEeEEcc-CCCCeEEEEECCEEc
Q psy12725         83 DETLNPGPNYYFKCIASG-NPTPEISWYLDGKKL  115 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~  115 (119)
                      ...+.+|+.++|.|.+.+ .|.+.+.|++++..+
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~   43 (85)
T cd05754          10 SQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGL   43 (85)
T ss_pred             ceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcC
Confidence            345778999999999864 577899999987543

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.64  E-value=0.0002  Score=34.83  Aligned_cols=26  Identities=27%  Similarity=0.659  Sum_probs=21.7

Q ss_pred             EEEEeEEccC-CCCeEEEEECCEEccc
Q psy12725         92 YYFKCIASGN-PTPEISWYLDGKKLVN  117 (119)
Q Consensus        92 ~~l~C~~~~~-p~~~~~W~~~~~~~~~  117 (119)
                      +.|.|.+.|. |.+.|.|+++++.+..
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~   28 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTG   28 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcC
Confidence            6799997665 7779999999998864

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.63  E-value=0.00042  Score=34.82  Aligned_cols=28  Identities=21%  Similarity=0.494  Sum_probs=22.0

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVP   29 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~   29 (119)
                      +..++|.|.+.+. | ...++|.+||..+.
T Consensus        16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~~~   45 (96)
T cd07697          16 QGQGIYLCLLENFFPDVIQVHWREGNSPSI   45 (96)
T ss_pred             CCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence            4568999999985 4 45789999988753

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.59  E-value=0.0007  Score=34.03  Aligned_cols=65  Identities=14%  Similarity=0.189  Sum_probs=37.4

Q ss_pred             CccEEE-EEEe-ccCCCCeeEEeeCCccCC------CCCC-----CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeE
Q psy12725          2 LALKFF-TCKY-EGNPVKTISWMKDGKPVP------DHNE-----PVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL   66 (119)
Q Consensus         2 g~~~~l-~c~~-~~~~~~~v~w~~~~~~~~------~~~~-----~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~   66 (119)
                      |+.+.+ .|.. .+.|.+.|+|+.+.....      ...+     +.+.+...+..|...++|++.+...........
T Consensus        16 g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~~~~~~~~   93 (97)
T cd07704          16 GNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQQDFRITH   93 (97)
T ss_pred             CcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccCCCceeeE
Confidence            455666 7776 566889999997632211      1111     234443344456668999999875433333333

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.58  E-value=0.00022  Score=36.10  Aligned_cols=31  Identities=16%  Similarity=0.407  Sum_probs=24.4

Q ss_pred             cCCCCcEEEEeEEccCCC--CeEEEEECCEEcc
Q psy12725         86 LNPGPNYYFKCIASGNPT--PEISWYLDGKKLV  116 (119)
Q Consensus        86 ~~~g~~~~l~C~~~~~p~--~~~~W~~~~~~~~  116 (119)
                      ...++.++|.|.+.+..+  ..+.|++||..+.
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~   46 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVS   46 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEECCEECc
Confidence            335677999999988733  3799999999875

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.58  E-value=0.00014  Score=36.48  Aligned_cols=29  Identities=17%  Similarity=0.358  Sum_probs=25.2

Q ss_pred             CccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725         82 SDETLNPGPNYYFKCIASGNPTPEISWYL  110 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~  110 (119)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~   33 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDNTSLQWSN   33 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCceEEEEeC
Confidence            34567899999999999999989999985

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.57  E-value=0.00063  Score=35.34  Aligned_cols=28  Identities=29%  Similarity=0.487  Sum_probs=21.9

Q ss_pred             CccEEEEEEeccC-CC-CeeEEeeCCccCC
Q psy12725          2 LALKFFTCKYEGN-PV-KTISWMKDGKPVP   29 (119)
Q Consensus         2 g~~~~l~c~~~~~-~~-~~v~w~~~~~~~~   29 (119)
                      ++.++|.|.+.+. |. ..+.|++|+..+.
T Consensus        18 ~~~~tL~Cla~gFyP~~I~V~W~kng~~l~   47 (115)
T cd05769          18 KRKATLVCLATGFYPDHVSLSWKVNGKEVT   47 (115)
T ss_pred             CCCcEEEEEEEeEeCCCcEEEEEECCEECC
Confidence            3568999999886 54 4899999987653

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.56  E-value=0.0021  Score=40.30  Aligned_cols=82  Identities=20%  Similarity=0.276  Sum_probs=52.7

Q ss_pred             CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCC---eEEEEE
Q psy12725         34 PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP---EISWYL  110 (119)
Q Consensus        34 ~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~  110 (119)
                      ..+.|.++...++|.|.-...+..........+.+.+.+.+|.+...+.  .+..|+...-.|.+....++   .+.|+.
T Consensus       207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~  284 (490)
T PHA03271        207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQ  284 (490)
T ss_pred             eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            4678888888999955333333322222222233333345676666544  47789999999998776444   699999


Q ss_pred             CCEEccc
Q psy12725        111 DGKKLVN  117 (119)
Q Consensus       111 ~~~~~~~  117 (119)
                      ||.++..
T Consensus       285 nG~~V~~  291 (490)
T PHA03271        285 NGNIATP  291 (490)
T ss_pred             CCccccC
Confidence            9988753

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=97.53  E-value=0.00015  Score=35.30  Aligned_cols=27  Identities=22%  Similarity=0.493  Sum_probs=22.6

Q ss_pred             CCcEEEEeEEccC--CCCeEEEEECCEEc
Q psy12725         89 GPNYYFKCIASGN--PTPEISWYLDGKKL  115 (119)
Q Consensus        89 g~~~~l~C~~~~~--p~~~~~W~~~~~~~  115 (119)
                      |+.+.|.|.+.+.  |.+.+.|++++..+
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~   29 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKR   29 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCccc
Confidence            6789999999998  77899999876544

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=97.50  E-value=0.00036  Score=34.26  Aligned_cols=27  Identities=15%  Similarity=0.370  Sum_probs=22.3

Q ss_pred             CcEEEEeEEccC--CCCeEEEEECCEEcc
Q psy12725         90 PNYYFKCIASGN--PTPEISWYLDGKKLV  116 (119)
Q Consensus        90 ~~~~l~C~~~~~--p~~~~~W~~~~~~~~  116 (119)
                      +++.|.|.+.+.  +++.+.|++||+++.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~   29 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLID   29 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECc
Confidence            368899998774  466899999999986

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=97.48  E-value=0.00019  Score=34.26  Aligned_cols=25  Identities=20%  Similarity=0.656  Sum_probs=20.2

Q ss_pred             EEEEeEEcc-CCCCeEEEEECCEEcc
Q psy12725         92 YYFKCIASG-NPTPEISWYLDGKKLV  116 (119)
Q Consensus        92 ~~l~C~~~~-~p~~~~~W~~~~~~~~  116 (119)
                      +.|.|.+.+ .|.+.+.|+++|+.+.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~   26 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIG   26 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccc
Confidence            468999764 5778999999998875

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.48  E-value=0.00051  Score=34.92  Aligned_cols=31  Identities=19%  Similarity=0.464  Sum_probs=24.5

Q ss_pred             cCCCCcEEEEeEEccCCCC--eEEEEECCEEcc
Q psy12725         86 LNPGPNYYFKCIASGNPTP--EISWYLDGKKLV  116 (119)
Q Consensus        86 ~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~  116 (119)
                      +..+..++|.|.+.|..+.  .+.|++||..+.
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~   45 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLS   45 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence            3456789999999997444  689999998865

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=97.46  E-value=0.00045  Score=33.57  Aligned_cols=25  Identities=32%  Similarity=0.751  Sum_probs=21.2

Q ss_pred             EEEEeEEccC-CCCeEEEEECCEEcc
Q psy12725         92 YYFKCIASGN-PTPEISWYLDGKKLV  116 (119)
Q Consensus        92 ~~l~C~~~~~-p~~~~~W~~~~~~~~  116 (119)
                      +.|.|.+.+. |.+.+.|++++..+.
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~   27 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELK   27 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEcc
Confidence            6899998765 778999999998875

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=97.45  E-value=0.00015  Score=34.95  Aligned_cols=21  Identities=33%  Similarity=0.716  Sum_probs=18.6

Q ss_pred             EEEEeEEccCCCCeEEEEECC
Q psy12725         92 YYFKCIASGNPTPEISWYLDG  112 (119)
Q Consensus        92 ~~l~C~~~~~p~~~~~W~~~~  112 (119)
                      +.|.|.+.|.|.|.+.|++++
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~   21 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSK   21 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECC
Confidence            478999999999999999864

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.45  E-value=0.00088  Score=33.51  Aligned_cols=31  Identities=16%  Similarity=0.423  Sum_probs=24.9

Q ss_pred             CCCCcEEEEeEEccCCCC--eEEEEECCEEccc
Q psy12725         87 NPGPNYYFKCIASGNPTP--EISWYLDGKKLVN  117 (119)
Q Consensus        87 ~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~  117 (119)
                      ..+...+|.|.+.+..++  .+.|++||..+..
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~   44 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETE   44 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCC
Confidence            357889999999997433  7899999988654

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.44  E-value=0.0005  Score=33.56  Aligned_cols=26  Identities=27%  Similarity=0.796  Sum_probs=21.4

Q ss_pred             EEEEeEEccC-CCCeEEEEECCEEccc
Q psy12725         92 YYFKCIASGN-PTPEISWYLDGKKLVN  117 (119)
Q Consensus        92 ~~l~C~~~~~-p~~~~~W~~~~~~~~~  117 (119)
                      +.|.|.+.+. |...+.|+++|..+..
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~   28 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKD   28 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcC
Confidence            5799999775 6668999999998754

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=97.43  E-value=0.00036  Score=34.07  Aligned_cols=25  Identities=36%  Similarity=0.748  Sum_probs=22.1

Q ss_pred             CCcEEEEeEEccCCCCeEEEEECCE
Q psy12725         89 GPNYYFKCIASGNPTPEISWYLDGK  113 (119)
Q Consensus        89 g~~~~l~C~~~~~p~~~~~W~~~~~  113 (119)
                      |+.+.|.|.+.+.|.+.+.|++.++
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~   25 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGK   25 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCc
Confidence            6889999999998889999998664

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=97.42  E-value=0.00052  Score=34.36  Aligned_cols=28  Identities=18%  Similarity=0.315  Sum_probs=24.1

Q ss_pred             cCCCCcEEEEeEEccCCCCeEEEEECCE
Q psy12725         86 LNPGPNYYFKCIASGNPTPEISWYLDGK  113 (119)
Q Consensus        86 ~~~g~~~~l~C~~~~~p~~~~~W~~~~~  113 (119)
                      +..|+.++|.|...+.+.+.+.|+++++
T Consensus         4 ~~~G~~VtL~C~~s~~~~~~i~W~~~~~   31 (94)
T cd07690           4 GKKGDTAELPCTASQKKSIQFHWKNSNQ   31 (94)
T ss_pred             eeCCCCEEEEEEeCCCCCcEEEEEECCc
Confidence            4679999999999888888999997763

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.41  E-value=0.00085  Score=33.59  Aligned_cols=30  Identities=17%  Similarity=0.489  Sum_probs=23.4

Q ss_pred             CCCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725         88 PGPNYYFKCIASGN-PTP-EISWYLDGKKLVN  117 (119)
Q Consensus        88 ~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~  117 (119)
                      .+...+|.|.+.|. |.. .+.|.+||..+..
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~   45 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTD   45 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccC
Confidence            35567999999997 433 7899999998754

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.40  E-value=0.00092  Score=33.31  Aligned_cols=26  Identities=31%  Similarity=0.721  Sum_probs=21.5

Q ss_pred             CCcEEEEeEEccC-CCC-eEEEEECCEE
Q psy12725         89 GPNYYFKCIASGN-PTP-EISWYLDGKK  114 (119)
Q Consensus        89 g~~~~l~C~~~~~-p~~-~~~W~~~~~~  114 (119)
                      ++.+.|.|.+.|. |.. .+.|+++|..
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~   41 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGED   41 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEE
Confidence            6789999999997 443 8999999863

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.40  E-value=0.00062  Score=33.21  Aligned_cols=26  Identities=27%  Similarity=0.658  Sum_probs=21.8

Q ss_pred             EEEEeEEccC-CCCeEEEEECCEEccc
Q psy12725         92 YYFKCIASGN-PTPEISWYLDGKKLVN  117 (119)
Q Consensus        92 ~~l~C~~~~~-p~~~~~W~~~~~~~~~  117 (119)
                      +.|.|.+.+. |.+.+.|+++|..+..
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~   28 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEG   28 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCC
Confidence            5799998776 7779999999988754

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.39  E-value=0.00086  Score=33.62  Aligned_cols=26  Identities=19%  Similarity=0.335  Sum_probs=21.1

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCcc
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKP   27 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~   27 (119)
                      ++.++|.|.+.+. | ...|+|.+++..
T Consensus        16 ~~~~~L~C~a~gFyP~~i~vtW~k~g~~   43 (95)
T cd04985          16 SDSVTLGCLATGFLPEPVTFTWNSGSNS   43 (95)
T ss_pred             CCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence            3568999999986 4 457899999886

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd00098 IgC Immunoglobulin Constant domain

Probab=97.39  E-value=0.00051  Score=34.15  Aligned_cols=31  Identities=29%  Similarity=0.658  Sum_probs=25.6

Q ss_pred             CCCCcEEEEeEEccC-CC-CeEEEEECCEEccc
Q psy12725         87 NPGPNYYFKCIASGN-PT-PEISWYLDGKKLVN  117 (119)
Q Consensus        87 ~~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~~  117 (119)
                      ..|+.+.|.|.+.+. |. ..+.|+++|..+..
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~   43 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTS   43 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCC
Confidence            367899999999998 53 47999999988764

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.38  E-value=0.0011  Score=33.52  Aligned_cols=26  Identities=23%  Similarity=0.464  Sum_probs=20.4

Q ss_pred             CccEEEEEEeccC--C-CCeeEEeeCCcc
Q psy12725          2 LALKFFTCKYEGN--P-VKTISWMKDGKP   27 (119)
Q Consensus         2 g~~~~l~c~~~~~--~-~~~v~w~~~~~~   27 (119)
                      ++.++|.|.+.+.  | ...|.|.+++..
T Consensus        19 ~~~atLtClV~~f~~P~~i~V~W~~~g~~   47 (99)
T cd04986          19 GSSASLTCTLSGLRDPEGAVFTWTPSGGK   47 (99)
T ss_pred             CCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence            5678999999884  3 457999998754

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.37  E-value=0.0011  Score=33.15  Aligned_cols=30  Identities=27%  Similarity=0.488  Sum_probs=23.7

Q ss_pred             CCCCcEEEEeEEccCCCC--eEEEEECCEEcc
Q psy12725         87 NPGPNYYFKCIASGNPTP--EISWYLDGKKLV  116 (119)
Q Consensus        87 ~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~  116 (119)
                      ..|....|.|.+.|..++  .+.|++||..+.
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~   44 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP   44 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC
Confidence            346667899999997444  689999999865

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=97.31  E-value=0.00069  Score=31.00  Aligned_cols=28  Identities=29%  Similarity=0.712  Sum_probs=22.7

Q ss_pred             CCcEEEEeEE-ccCCCCeEEEEECCEEcc
Q psy12725         89 GPNYYFKCIA-SGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        89 g~~~~l~C~~-~~~p~~~~~W~~~~~~~~  116 (119)
                      |+.+.|.|.+ .+.+.+.+.|++++..+.
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~   29 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLP   29 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTS
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCcccc
Confidence            6889999999 666777999999876443

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.26  E-value=0.0013  Score=33.10  Aligned_cols=32  Identities=6%  Similarity=0.188  Sum_probs=24.6

Q ss_pred             cCCCCcEEEEeEEccCCCC--eEEEEECCEEccc
Q psy12725         86 LNPGPNYYFKCIASGNPTP--EISWYLDGKKLVN  117 (119)
Q Consensus        86 ~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~  117 (119)
                      +..+..++|.|.+.+..+.  .+.|.+||..+..
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~   46 (96)
T cd07697          13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL   46 (96)
T ss_pred             HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence            4445678999999997433  6899999998653

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.26  E-value=0.0011  Score=34.49  Aligned_cols=32  Identities=25%  Similarity=0.643  Sum_probs=25.0

Q ss_pred             cCCCCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725         86 LNPGPNYYFKCIASGN-PTP-EISWYLDGKKLVN  117 (119)
Q Consensus        86 ~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~  117 (119)
                      +.+++.++|.|.+.+. |.. .+.|++||..+..
T Consensus        15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~   48 (115)
T cd05769          15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTD   48 (115)
T ss_pred             hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCC
Confidence            4456789999999987 443 7899999988753

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PHA02982 hypothetical protein; Provisional

Probab=97.23  E-value=0.0012  Score=37.54  Aligned_cols=57  Identities=12%  Similarity=0.356  Sum_probs=41.1

Q ss_pred             CCccEEEEEEeccCC-CCeeEEeeCCc-cCC----------C-----------------CCCCeEEEecCCCCCCeEEEE
Q psy12725          1 MLALKFFTCKYEGNP-VKTISWMKDGK-PVP----------D-----------------HNEPVFRIDSVRKEDKGMYQC   51 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~-~~~v~w~~~~~-~~~----------~-----------------~~~~~l~~~~~~~~d~g~y~C   51 (119)
                      +|+.|.|.|...... .....|+++.. -+.          .                 .+.++|+|.++..+..|.|+|
T Consensus        38 vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GCYtc  117 (251)
T PHA02982         38 VDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGCFTC  117 (251)
T ss_pred             CCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCceEE
Confidence            488999999975433 34678976431 110          0                 135789999999999999999


Q ss_pred             EEEcCC
Q psy12725         52 VIRNEQ   57 (119)
Q Consensus        52 ~~~~~~   57 (119)
                      ++....
T Consensus       118 ~~ks~~  123 (251)
T PHA02982        118 EAKDAE  123 (251)
T ss_pred             EEecCC
Confidence            998754

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.16  E-value=0.0029  Score=31.76  Aligned_cols=27  Identities=19%  Similarity=0.501  Sum_probs=21.9

Q ss_pred             CCCcEEEEeEEccCCC-C-eEEEEECCEE
Q psy12725         88 PGPNYYFKCIASGNPT-P-EISWYLDGKK  114 (119)
Q Consensus        88 ~g~~~~l~C~~~~~p~-~-~~~W~~~~~~  114 (119)
                      .++.+.|.|.+.+..+ . .+.|++||..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~   43 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS   43 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence            4567899999999743 3 7899999986

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=97.14  E-value=0.025  Score=35.65  Aligned_cols=107  Identities=12%  Similarity=0.169  Sum_probs=64.7

Q ss_pred             CCccEEEEEEeccC---CCCeeEEeeCCccCCC--------------------------------CCCCeEEEecCCCCC
Q psy12725          1 MLALKFFTCKYEGN---PVKTISWMKDGKPVPD--------------------------------HNEPVFRIDSVRKED   45 (119)
Q Consensus         1 ~g~~~~l~c~~~~~---~~~~v~w~~~~~~~~~--------------------------------~~~~~l~~~~~~~~d   45 (119)
                      +|.+|.+.|....-   ......|+-.+-.+.+                                -..++|+|.+++...
T Consensus       278 ~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~I~N  357 (500)
T PHA02914        278 VGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAHINN  357 (500)
T ss_pred             cCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEEEEc
Confidence            48899999987542   3456789865433321                                134789999999999


Q ss_pred             CeEEEEEEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCC-cEEEEeEEccC--CCCeEEEEECCEEcc
Q psy12725         46 KGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGP-NYYFKCIASGN--PTPEISWYLDGKKLV  116 (119)
Q Consensus        46 ~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~-~~~l~C~~~~~--p~~~~~W~~~~~~~~  116 (119)
                      .|.|.|++............+.+.     .++...    ...+|+ ...+.|-+...  .++.+.|..+|....
T Consensus       358 ~GCY~~~a~~g~~~~ec~~Cl~V~-----d~V~f~----W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~  422 (500)
T PHA02914        358 AGCYEAQAFMGKFKEECRHCFKVA-----DHVFFK----WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG  422 (500)
T ss_pred             CCceEEEEecCcchhhhhhheEec-----cEEEEE----EEeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence            999999998764333333333331     111110    112333 34567865433  455799998876543

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.10  E-value=0.0053  Score=31.86  Aligned_cols=52  Identities=21%  Similarity=0.364  Sum_probs=34.9

Q ss_pred             CccEEEEEEeccCC--C-CeeEEeeCCc-cC-----------CC--------------CCCCeEEEecCCCCCCeEEEEE
Q psy12725          2 LALKFFTCKYEGNP--V-KTISWMKDGK-PV-----------PD--------------HNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~-~~v~w~~~~~-~~-----------~~--------------~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      |+.++|.|.+.+..  . -.+.|+|... .+           ..              ...-.|.+.+++.+|.+.|.|.
T Consensus        13 ~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca   92 (115)
T cd05721          13 NGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIYFCK   92 (115)
T ss_pred             CCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEEEEE
Confidence            67899999997653  2 3678887311 11           00              1123578888899999999996


Q ss_pred             E
Q psy12725         53 I   53 (119)
Q Consensus        53 ~   53 (119)
                      .
T Consensus        93 ~   93 (115)
T cd05721          93 I   93 (115)
T ss_pred             e
Confidence            6

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.09  E-value=0.00094  Score=32.84  Aligned_cols=27  Identities=41%  Similarity=1.016  Sum_probs=21.7

Q ss_pred             CCcEEEEeEE-ccCCCCeEEEEECCEEc
Q psy12725         89 GPNYYFKCIA-SGNPTPEISWYLDGKKL  115 (119)
Q Consensus        89 g~~~~l~C~~-~~~p~~~~~W~~~~~~~  115 (119)
                      |+.+.+.|.+ .+.|.+.+.|+.++..+
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~   41 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPV   41 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCce
Confidence            6789999975 56688899999998766

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=97.09  E-value=0.0011  Score=33.29  Aligned_cols=32  Identities=16%  Similarity=0.228  Sum_probs=26.3

Q ss_pred             cccCCCCcEEEEeEE-ccCCCCeEEEEECCEEc
Q psy12725         84 ETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKL  115 (119)
Q Consensus        84 ~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~  115 (119)
                      ..+.+|..+.|.|.. .+.|.+.+.|++++..+
T Consensus        13 ~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~   45 (96)
T cd05727          13 VKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPN   45 (96)
T ss_pred             eeeeeCCcEEEeeCCCCCCCCCEEEEEECCccc
Confidence            357789999999964 66788899999998754

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.08  E-value=0.0024  Score=31.99  Aligned_cols=29  Identities=28%  Similarity=0.639  Sum_probs=22.8

Q ss_pred             CCCcEEEEeEEccC-CC-CeEEEEECCEEcc
Q psy12725         88 PGPNYYFKCIASGN-PT-PEISWYLDGKKLV  116 (119)
Q Consensus        88 ~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~  116 (119)
                      ..+.+.|.|.+.|. |. ..+.|+++|..+.
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~   43 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVAT   43 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECc
Confidence            34668999999997 43 3789999999863

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=97.08  E-value=0.003  Score=31.33  Aligned_cols=38  Identities=16%  Similarity=0.281  Sum_probs=27.6

Q ss_pred             CeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEE
Q psy12725         75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK  114 (119)
Q Consensus        75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~  114 (119)
                      |.+...+ ...+.+|+.++|.|... .+...+.|+++|..
T Consensus         3 P~L~a~p-~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~   40 (91)
T cd05751           3 PSLWAEP-SSVVPLGKPVTLRCQGP-YGAVEYRLYREGST   40 (91)
T ss_pred             CEEEecC-CCccCCCCcEEEEEecC-CCCCEEEEEECCCC
Confidence            4444433 34678999999999764 55668999998775

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.04  E-value=0.00064  Score=33.87  Aligned_cols=33  Identities=27%  Similarity=0.389  Sum_probs=25.5

Q ss_pred             ccCCCCcEEEEeEEcc-----CCCCeEEEEECCEEccc
Q psy12725         85 TLNPGPNYYFKCIASG-----NPTPEISWYLDGKKLVN  117 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~~-----~p~~~~~W~~~~~~~~~  117 (119)
                      .+..|....|.|...+     .|.|.+.|+|++.++..
T Consensus         6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~   43 (92)
T cd05757           6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEG   43 (92)
T ss_pred             EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCC
Confidence            3557888999998643     25679999999998864

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.00  E-value=0.0022  Score=30.59  Aligned_cols=25  Identities=24%  Similarity=0.683  Sum_probs=19.9

Q ss_pred             EEEEeEEccC-CC-CeEEEEECCEEcc
Q psy12725         92 YYFKCIASGN-PT-PEISWYLDGKKLV  116 (119)
Q Consensus        92 ~~l~C~~~~~-p~-~~~~W~~~~~~~~  116 (119)
                      +.|.|.+.+. |. ..+.|++||..+.
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~   28 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVT   28 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECC
Confidence            6799999887 44 3799999998643

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=96.96  E-value=0.0016  Score=32.68  Aligned_cols=32  Identities=13%  Similarity=0.216  Sum_probs=26.5

Q ss_pred             ccccCCCCcEEEEeE-EccCCCCeEEEEECCEE
Q psy12725         83 DETLNPGPNYYFKCI-ASGNPTPEISWYLDGKK  114 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~-~~~~p~~~~~W~~~~~~  114 (119)
                      ...+.+|+.+.|.|. ..+.|.|.+.|++++..
T Consensus        12 ~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~   44 (95)
T cd05845          12 PVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLL   44 (95)
T ss_pred             eeEEecCCCEEEEecCCCCCCCCEEEEECCCCc
Confidence            446789999999997 68899999999976543

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=96.95  E-value=0.0019  Score=32.22  Aligned_cols=28  Identities=25%  Similarity=0.444  Sum_probs=23.7

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYL  110 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~  110 (119)
                      ...+.+|+.+.|.|.+.+.+.+.+.|++
T Consensus         6 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~   33 (95)
T cd05717           6 DVTVVEGGTATLKCRVKNNDNSSLQWSN   33 (95)
T ss_pred             cEEEcCCCCEEEEEEECCCCCceEEEeC
Confidence            3457889999999999887778999985

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.91  E-value=0.0014  Score=34.66  Aligned_cols=66  Identities=15%  Similarity=0.265  Sum_probs=37.1

Q ss_pred             CccEEEEEEeccC-----CCCeeEEeeCCccCCC----------------------CCCCeEEEecCCCCCCeEEEEEEE
Q psy12725          2 LALKFFTCKYEGN-----PVKTISWMKDGKPVPD----------------------HNEPVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus         2 g~~~~l~c~~~~~-----~~~~v~w~~~~~~~~~----------------------~~~~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      .++|.++|.+...     +.-.|.|..++..+..                      .+.++|.+.....- .|.|+|.+.
T Consensus        27 N~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeVt  105 (130)
T PF08204_consen   27 NDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEVT  105 (130)
T ss_dssp             -SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEEE
T ss_pred             CCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEEE
Confidence            4788999999652     2335899876654311                      12345766654433 799999998


Q ss_pred             cCCCCceeEeeEEE
Q psy12725         55 NEQESAQASGELKL   68 (119)
Q Consensus        55 ~~~~~~~~~~~~~v   68 (119)
                      ......+..+.++.
T Consensus       106 ~~~~ege~~i~Lk~  119 (130)
T PF08204_consen  106 ELSREGETTIELKY  119 (130)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             ecCCCceEEEEEEE
Confidence            87554444444444

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=96.85  E-value=0.0037  Score=32.05  Aligned_cols=29  Identities=14%  Similarity=0.358  Sum_probs=23.7

Q ss_pred             CccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         82 SDETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      ....+.+|+.++|.|...+ +.+.+.|||.
T Consensus         6 ~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq   34 (110)
T cd05899           6 RYLIKGRGQSVTLRCSQTS-GHDNMYWYRQ   34 (110)
T ss_pred             CceEEcCCCcEEEEEEECC-CCCEEEEEEE
Confidence            3456789999999999877 6678999985

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.84  E-value=0.0035  Score=31.53  Aligned_cols=29  Identities=10%  Similarity=0.290  Sum_probs=22.8

Q ss_pred             ccCCCCcEEEEeEEccC-CCC--eEEEEECCE
Q psy12725         85 TLNPGPNYYFKCIASGN-PTP--EISWYLDGK  113 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~~~-p~~--~~~W~~~~~  113 (119)
                      .+..++.++|.|.+.+. .++  .+.|.+|+.
T Consensus        10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~   41 (96)
T cd07696          10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSG   41 (96)
T ss_pred             HhccCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence            35567889999999998 443  689999874

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.78  E-value=0.0037  Score=30.38  Aligned_cols=30  Identities=27%  Similarity=0.692  Sum_probs=24.2

Q ss_pred             CCCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725         88 PGPNYYFKCIASGN-PTP-EISWYLDGKKLVN  117 (119)
Q Consensus        88 ~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~  117 (119)
                      .+..+.|.|.+.+. |.. .+.|+++|..+..
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~   38 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTE   38 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETT
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeee
Confidence            37889999999887 433 7999999998754

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>smart00409 IG Immunoglobulin

Probab=96.76  E-value=0.0061  Score=28.93  Aligned_cols=31  Identities=42%  Similarity=0.917  Sum_probs=25.6

Q ss_pred             ccCCCCcEEEEeEEccCCCCeEEEEEC-CEEc
Q psy12725         85 TLNPGPNYYFKCIASGNPTPEISWYLD-GKKL  115 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~~~p~~~~~W~~~-~~~~  115 (119)
                      .+..|+.+.|.|.+.+.+.+.+.|+++ +..+
T Consensus         5 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v   36 (86)
T smart00409        5 TVKEGESVTLSCEVSGSPPPEVTWYKQGGKLL   36 (86)
T ss_pred             EEeCCCeEEEEEEEccCCCCeEEEEECCCEEc
Confidence            456799999999998877779999997 6655

>smart00410 IG_like Immunoglobulin like

Probab=96.76  E-value=0.0061  Score=28.93  Aligned_cols=31  Identities=42%  Similarity=0.917  Sum_probs=25.6

Q ss_pred             ccCCCCcEEEEeEEccCCCCeEEEEEC-CEEc
Q psy12725         85 TLNPGPNYYFKCIASGNPTPEISWYLD-GKKL  115 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~~~p~~~~~W~~~-~~~~  115 (119)
                      .+..|+.+.|.|.+.+.+.+.+.|+++ +..+
T Consensus         5 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v   36 (86)
T smart00410        5 TVKEGESVTLSCEVSGSPPPEVTWYKQGGKLL   36 (86)
T ss_pred             EEeCCCeEEEEEEEccCCCCeEEEEECCCEEc
Confidence            456799999999998877779999997 6655

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=96.71  E-value=0.0053  Score=31.29  Aligned_cols=29  Identities=21%  Similarity=0.371  Sum_probs=24.1

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      ...+.+|+.+.|.|...+.+...+.|++.
T Consensus         7 ~v~~~~G~~v~L~C~~~~~~~~~v~W~k~   35 (109)
T cd04983           7 SLSVQEGENVTLNCNYSTSTFYYLFWYRQ   35 (109)
T ss_pred             ceEEcCCCCEEEEEEECCCCccEEEEEEE
Confidence            44578999999999988776778999975

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=96.68  E-value=0.004  Score=31.56  Aligned_cols=33  Identities=24%  Similarity=0.378  Sum_probs=28.4

Q ss_pred             cccCCCCcEEEEeEEccCCCCe-EEEEECCEEcc
Q psy12725         84 ETLNPGPNYYFKCIASGNPTPE-ISWYLDGKKLV  116 (119)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~p~~~-~~W~~~~~~~~  116 (119)
                      ..+..|+.+.|.|.+.+.|+|. +.|.+++..+.
T Consensus        13 ~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~   46 (101)
T cd05860          13 IFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLT   46 (101)
T ss_pred             EEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccC
Confidence            4578999999999999999996 99999877654

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=96.57  E-value=0.0043  Score=30.83  Aligned_cols=25  Identities=12%  Similarity=0.567  Sum_probs=20.9

Q ss_pred             cCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         86 LNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        86 ~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      ..+|+.+.|.|.. +.|.|.+.|+++
T Consensus         8 ~~eG~~v~L~C~~-~~p~p~v~Wykq   32 (91)
T cd05871           8 GVENNSTFLECLP-KSPQASVKWLFQ   32 (91)
T ss_pred             EecCCcEEEEEEC-CCCCceEEEEEE
Confidence            4679999999996 478889999973

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=96.55  E-value=0.0093  Score=30.35  Aligned_cols=30  Identities=23%  Similarity=0.548  Sum_probs=23.2

Q ss_pred             CccccCCCCcEEEEeEEccCC-CCeEEEEEC
Q psy12725         82 SDETLNPGPNYYFKCIASGNP-TPEISWYLD  111 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~  111 (119)
                      ....+.+|+.++|.|...+.. ...+.||+.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq   38 (106)
T cd04980           8 ATLSVSPGESATISCKASQSVSSNYLAWYQQ   38 (106)
T ss_pred             CcEEECCCCCEEEEEEECCCCCCCcEEEEEE
Confidence            344678999999999986654 567999974

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=96.48  E-value=0.005  Score=30.25  Aligned_cols=32  Identities=25%  Similarity=0.562  Sum_probs=26.2

Q ss_pred             ccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         85 TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+..|+.+.|.|..... .+.+.|+++|..+..
T Consensus         7 tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~   38 (85)
T cd05872           7 TVAPGADVVLPCQLRSN-LASPVWLFNGTPLNA   38 (85)
T ss_pred             EEecCCCEEEECCCCCC-CccEEEEECCcccCC
Confidence            56789999999987654 569999999987754

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PHA03042 CD47-like protein; Provisional

Probab=96.39  E-value=0.068  Score=31.99  Aligned_cols=67  Identities=18%  Similarity=0.237  Sum_probs=43.0

Q ss_pred             CccEEEEEEeccC-----CCCeeEEeeCCccCCC---CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          2 LALKFFTCKYEGN-----PVKTISWMKDGKPVPD---HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         2 g~~~~l~c~~~~~-----~~~~v~w~~~~~~~~~---~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .+++.+.|.+...     ..-.+.|..++..+..   ...++|.+.. ...-.|+|+|++.+..........++..
T Consensus        31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~IeLk~~  105 (286)
T PHA03042         31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIELQYV  105 (286)
T ss_pred             CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcceEEEEec-cccCCCceeEEEeecccCccEEEEEEEE
Confidence            3678999998653     2446999887765422   2334565543 3334799999998866555555555543

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=96.38  E-value=0.0096  Score=30.79  Aligned_cols=29  Identities=28%  Similarity=0.430  Sum_probs=23.2

Q ss_pred             ccccCCCCcEEEEeEEcc--CCCCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASG--NPTPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~--~p~~~~~W~~~  111 (119)
                      ...+.+|+.++|.|...+  .+.+.+.|++.
T Consensus         7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq   37 (116)
T cd04982           7 SITREESKSVTISCKVSGIDFSTTYIHWYRQ   37 (116)
T ss_pred             eEEeCCCCCEEEEEEEeCCCccccEEEEEEE
Confidence            345678999999999876  56678999974

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=96.32  E-value=0.023  Score=28.35  Aligned_cols=31  Identities=16%  Similarity=0.335  Sum_probs=23.7

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEECCEE
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYLDGKK  114 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~  114 (119)
                      ...+.+|+.++|.|.... ....+.|+|+|..
T Consensus         9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~   39 (94)
T cd05711           9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRS   39 (94)
T ss_pred             CCccCCCCeEEEEEecCC-CCCEEEEEECCCC
Confidence            446789999999997644 4457999998754

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=96.11  E-value=0.0078  Score=30.22  Aligned_cols=31  Identities=26%  Similarity=0.381  Sum_probs=23.5

Q ss_pred             cCCCCcEEEEeEE-c----cCCCCeEEEEECCEEcc
Q psy12725         86 LNPGPNYYFKCIA-S----GNPTPEISWYLDGKKLV  116 (119)
Q Consensus        86 ~~~g~~~~l~C~~-~----~~p~~~~~W~~~~~~~~  116 (119)
                      +..|....|.|.. .    ..+.+.+.||||+.++.
T Consensus         7 ~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~   42 (95)
T cd05897           7 LFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLD   42 (95)
T ss_pred             eccccCcEEECCCHHHcccCCCCCcEEEccCCEECc
Confidence            4567788999973 2    23566899999999875

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.10  E-value=0.028  Score=33.41  Aligned_cols=43  Identities=16%  Similarity=0.355  Sum_probs=32.9

Q ss_pred             CCCeeEEeeCC-ccCCC------CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725         15 PVKTISWMKDG-KPVPD------HNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus        15 ~~~~v~w~~~~-~~~~~------~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      ..|.+.|...+ ..+..      .....|++.+....++|.|+|.+.+..
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence            57899998743 33332      345779999999999999999998754

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>KOG4597|consensus

Probab=96.09  E-value=0.015  Score=37.34  Aligned_cols=68  Identities=15%  Similarity=0.129  Sum_probs=50.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEee---CCccCCC-----------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMK---DGKPVPD-----------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL   66 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~---~~~~~~~-----------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~   66 (119)
                      +|++..++|-+.|.+.+.|+|.+   |.+.+..           .....|.|.+....|.|.|+|.+.+..+.....+..
T Consensus       210 ~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c  289 (560)
T KOG4597|consen  210 DWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPC  289 (560)
T ss_pred             cchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeecccee
Confidence            46788999999999999999975   3322211           123568888999999999999999988766665555


Q ss_pred             EE
Q psy12725         67 KL   68 (119)
Q Consensus        67 ~v   68 (119)
                      .+
T Consensus       290 ~s  291 (560)
T KOG4597|consen  290 SS  291 (560)
T ss_pred             ee
Confidence            44

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=96.07  E-value=0.006  Score=28.46  Aligned_cols=18  Identities=50%  Similarity=1.149  Sum_probs=16.1

Q ss_pred             EEEEeEEccCC-CCeEEEE
Q psy12725         92 YYFKCIASGNP-TPEISWY  109 (119)
Q Consensus        92 ~~l~C~~~~~p-~~~~~W~  109 (119)
                      +.|.|.+.+.+ .+.+.|+
T Consensus        18 ~~l~C~~~~~~~~~~~~W~   36 (75)
T PF13927_consen   18 VTLTCSAEGGPPPPSISWY   36 (75)
T ss_dssp             EEEEEEESSEESSEEEEEE
T ss_pred             EEEEEEEccccCCeEEEEE
Confidence            99999998886 6789999

...

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=96.04  E-value=0.022  Score=28.64  Aligned_cols=31  Identities=19%  Similarity=0.224  Sum_probs=24.4

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEECCE
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYLDGK  113 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~  113 (119)
                      ...+.+|+++.|.|.+.+.....+.|++.+.
T Consensus         6 nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~   36 (95)
T cd05881           6 DVTVVEGEVAIISCRVKNNDDSVIQLLNPNR   36 (95)
T ss_pred             ceEEcCCCcEEEEEEEccCCccEEEEEecCC
Confidence            3457889999999999877666788887653

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=95.77  E-value=0.031  Score=27.96  Aligned_cols=27  Identities=22%  Similarity=0.641  Sum_probs=21.0

Q ss_pred             ccCCCCcEEEEeEEccC--CCCeEEEEEC
Q psy12725         85 TLNPGPNYYFKCIASGN--PTPEISWYLD  111 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~~~--p~~~~~W~~~  111 (119)
                      .+.+|+++.|.|.....  ....+.||+.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q   30 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQ   30 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEE
Confidence            46789999999997654  4457999974

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.69  E-value=0.043  Score=27.81  Aligned_cols=29  Identities=28%  Similarity=0.454  Sum_probs=22.3

Q ss_pred             cCCCCcEEEEeEEccCC-C--CeEEEEECCEE
Q psy12725         86 LNPGPNYYFKCIASGNP-T--PEISWYLDGKK  114 (119)
Q Consensus        86 ~~~g~~~~l~C~~~~~p-~--~~~~W~~~~~~  114 (119)
                      ...+..++|.|.+.+.. +  ..+.|.++|..
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~   47 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK   47 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence            44677899999998864 2  27999999864

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=95.58  E-value=0.034  Score=28.00  Aligned_cols=28  Identities=25%  Similarity=0.538  Sum_probs=22.0

Q ss_pred             ccCCCCcEEEEeEEccC-CCCeEEEEECC
Q psy12725         85 TLNPGPNYYFKCIASGN-PTPEISWYLDG  112 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~~~-p~~~~~W~~~~  112 (119)
                      .+.+|+.+.|.|..... +...+.|++..
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~   30 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQK   30 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEEC
Confidence            35689999999998765 55689999743

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=95.48  E-value=0.04  Score=26.97  Aligned_cols=25  Identities=24%  Similarity=0.554  Sum_probs=19.6

Q ss_pred             CCcEEEEeEEccCCC--CeEEEEECCE
Q psy12725         89 GPNYYFKCIASGNPT--PEISWYLDGK  113 (119)
Q Consensus        89 g~~~~l~C~~~~~p~--~~~~W~~~~~  113 (119)
                      |+.+.|.|.+.+.+.  ..+.|...+.
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~   27 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGK   27 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCc
Confidence            678999999987654  4789987665

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=95.35  E-value=0.051  Score=27.63  Aligned_cols=28  Identities=18%  Similarity=0.364  Sum_probs=21.1

Q ss_pred             ccCCCCcEEEEeEEccCCCCeEEEEECC
Q psy12725         85 TLNPGPNYYFKCIASGNPTPEISWYLDG  112 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~  112 (119)
                      .+.+|+.++|.|.........+.|++..
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~   29 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQP   29 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeC
Confidence            3578999999998755444579999743

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=95.08  E-value=0.072  Score=27.76  Aligned_cols=31  Identities=23%  Similarity=0.467  Sum_probs=22.5

Q ss_pred             CCccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      +....+.+|+.++|.|......  ...+.||+.
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ   36 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQ   36 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEE
Confidence            3455678999999999865432  346999974

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=95.08  E-value=0.023  Score=26.35  Aligned_cols=27  Identities=22%  Similarity=0.446  Sum_probs=19.7

Q ss_pred             CCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         87 NPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        87 ~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      ..|.+++|+|.....   .+.|++++..+.
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~   31 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQ   31 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCC
Confidence            368899999965422   399999986654

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=94.80  E-value=0.099  Score=27.03  Aligned_cols=29  Identities=21%  Similarity=0.409  Sum_probs=21.8

Q ss_pred             ccccCCCCcEEEEeEEccC-CCCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGN-PTPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~  111 (119)
                      ...+..|+.+.|.|..... ....+.|++.
T Consensus         8 ~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq   37 (116)
T cd07706           8 DVSVQVGEEVTLNCRYETSWTNYYIFWYKQ   37 (116)
T ss_pred             ceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence            4457899999999987543 3457999973

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=94.70  E-value=0.094  Score=26.76  Aligned_cols=27  Identities=19%  Similarity=0.306  Sum_probs=20.5

Q ss_pred             ccCCCCcEEEEeEEccC-CCCeEEEEEC
Q psy12725         85 TLNPGPNYYFKCIASGN-PTPEISWYLD  111 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~~~-p~~~~~W~~~  111 (119)
                      .+.+|+.++|.|..... ....+.||+.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq   29 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRW   29 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEE
Confidence            35789999999997653 3447999964

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=94.65  E-value=0.086  Score=27.01  Aligned_cols=29  Identities=14%  Similarity=0.221  Sum_probs=21.2

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      +..+.+|+.+.|.|.......-.+.|+|.
T Consensus         7 p~~~~~G~~V~L~v~~~p~~~~~~~W~kg   35 (105)
T cd05774           7 PPQVAEGENVLLLVHNLPENLLAYAWYKG   35 (105)
T ss_pred             CCcccCCCCEEEEecCCCCCceEEEEEcC
Confidence            44577899999999654333338999995

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=94.52  E-value=0.053  Score=26.60  Aligned_cols=25  Identities=20%  Similarity=0.356  Sum_probs=19.3

Q ss_pred             CCcEEEEeEEccCCCCeEEEEECCE
Q psy12725         89 GPNYYFKCIASGNPTPEISWYLDGK  113 (119)
Q Consensus        89 g~~~~l~C~~~~~p~~~~~W~~~~~  113 (119)
                      |++++|.|.........+.|+++..
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~   25 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKD   25 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCC
Confidence            6889999987665555899998653

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=94.24  E-value=0.3  Score=23.76  Aligned_cols=38  Identities=16%  Similarity=0.245  Sum_probs=26.0

Q ss_pred             CCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEE
Q psy12725         16 VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus        16 ~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      .+.+.|+..+.... ........+.....|.|.+.|.+.
T Consensus        26 ~~~~~l~~~~~k~~-~~~~~~~~~~~~~~d~G~w~C~a~   63 (80)
T PF05790_consen   26 KPSLFLENPGKKSL-ETKKLVSTFTPTTEDSGTWVCTAS   63 (80)
T ss_dssp             CEEEEEECSSCEEE-EESSEEEEESBTCGGSEEEEEEEE
T ss_pred             ChhheeeccCcccc-ccceEEEEecCCCCCCEEEEEEEc
Confidence            45666765443221 234566777888999999999994

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=94.21  E-value=0.23  Score=25.20  Aligned_cols=32  Identities=25%  Similarity=0.259  Sum_probs=23.4

Q ss_pred             ccCCCCcEEEEeEEccC-CC--CeEEEEECCEEcc
Q psy12725         85 TLNPGPNYYFKCIASGN-PT--PEISWYLDGKKLV  116 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~~~-p~--~~~~W~~~~~~~~  116 (119)
                      ....|..+++.|.+.+. |.  ..+.|++....+.
T Consensus        11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~   45 (99)
T cd07689          11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLP   45 (99)
T ss_pred             cccCCceEEEEEEecCcccCCceEEEEecCcceec
Confidence            35789999999998655 43  3689988665543

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd00096 Ig Immunoglobulin domain

Probab=94.20  E-value=0.16  Score=22.49  Aligned_cols=25  Identities=44%  Similarity=0.934  Sum_probs=18.9

Q ss_pred             EEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         92 YYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        92 ~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      +.+.|.+.+.+...+.|++++....
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~   25 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLP   25 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECC
Confidence            3678988776667899999876654

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA03052 Hypothetical protein; Provisional

Probab=94.15  E-value=0.21  Score=23.32  Aligned_cols=32  Identities=19%  Similarity=0.369  Sum_probs=23.8

Q ss_pred             ccCCCCcEEEEeEEc-cC--CCCeEEEEECCEEcc
Q psy12725         85 TLNPGPNYYFKCIAS-GN--PTPEISWYLDGKKLV  116 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~-~~--p~~~~~W~~~~~~~~  116 (119)
                      .+..|..+++.|.+. +.  ..+.+.|..|+..++
T Consensus         8 ~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e   42 (69)
T PHA03052          8 VTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE   42 (69)
T ss_pred             EEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence            456789999999873 33  345799999988773

>KOG1480|consensus

Probab=93.97  E-value=0.048  Score=37.26  Aligned_cols=56  Identities=23%  Similarity=0.488  Sum_probs=40.8

Q ss_pred             ccEEEEEEe-ccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          3 ALKFFTCKY-EGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         3 ~~~~l~c~~-~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      ..+.+.|.. .+.|...+.|++++..+...      ....+.+..+.+.|.|+|+|++.+-..
T Consensus       145 s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~  207 (909)
T KOG1480|consen  145 TTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVA  207 (909)
T ss_pred             ccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhc
Confidence            344566665 34567789999998776542      235678888899999999999988653

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=93.96  E-value=0.16  Score=25.14  Aligned_cols=26  Identities=19%  Similarity=0.290  Sum_probs=20.5

Q ss_pred             ccCCCCcEEEEeEEccCC--CCeEEEEE
Q psy12725         85 TLNPGPNYYFKCIASGNP--TPEISWYL  110 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~~~p--~~~~~W~~  110 (119)
                      .+..|++++|+|+....+  .+.+.|+.
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~   37 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRG   37 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeC
Confidence            567899999999985543  44899985

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=93.92  E-value=0.39  Score=24.72  Aligned_cols=29  Identities=21%  Similarity=0.390  Sum_probs=23.3

Q ss_pred             CCCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725         32 NEPVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus        32 ~~~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      .+.+|.|..+++.|+|.|.-++.+..|..
T Consensus        69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V   97 (108)
T PF11465_consen   69 ENLALLIKAAQPQDSGLYCLEVTNESGKV   97 (108)
T ss_dssp             TTTEEEESS-SGGG-EEEEEEEEETTSCE
T ss_pred             cCceEEEeecCcccCceEEEEEEcCCCcE
Confidence            46789999999999999999999876654

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=93.36  E-value=0.28  Score=24.64  Aligned_cols=22  Identities=32%  Similarity=0.735  Sum_probs=17.5

Q ss_pred             CcEEEEeEE-ccCCCCeEEEEEC
Q psy12725         90 PNYYFKCIA-SGNPTPEISWYLD  111 (119)
Q Consensus        90 ~~~~l~C~~-~~~p~~~~~W~~~  111 (119)
                      ....+.|.+ .+.|.+.|.|+++
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~   38 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETT   38 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeC
Confidence            346678987 5678889999986

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=93.15  E-value=0.17  Score=25.59  Aligned_cols=27  Identities=22%  Similarity=0.668  Sum_probs=20.8

Q ss_pred             ccCCCCcEEE-EeEE-ccCCCCeEEEEEC
Q psy12725         85 TLNPGPNYYF-KCIA-SGNPTPEISWYLD  111 (119)
Q Consensus        85 ~~~~g~~~~l-~C~~-~~~p~~~~~W~~~  111 (119)
                      .+.+|+.+.+ .|.+ .+.|.+.+.|+.+
T Consensus        12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~   40 (97)
T cd07704          12 LIDGGNGTTLAACCAAEGRPAADVTWETN   40 (97)
T ss_pred             EeecCcceeEEEEEccCCccCCEeEEeCC
Confidence            3557788888 8875 5668889999976

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=93.05  E-value=0.2  Score=25.28  Aligned_cols=29  Identities=24%  Similarity=0.474  Sum_probs=22.2

Q ss_pred             CccccCCCCcEEEEeEEc-cCCCCeEEEEE
Q psy12725         82 SDETLNPGPNYYFKCIAS-GNPTPEISWYL  110 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~  110 (119)
                      ....+..|+.+.|.|... ......+.|++
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~   38 (114)
T PF07686_consen    9 SPVTVQEGESVTLPCSYSSSSNQSSVYWYR   38 (114)
T ss_dssp             SEEEEETTSEEEEEEEEESSSSGSEEEEEE
T ss_pred             CeEEEecCCCEEEEEEEeCCCCcceEEEEE
Confidence            344567899999999987 34455899997

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=92.97  E-value=0.25  Score=28.08  Aligned_cols=29  Identities=17%  Similarity=0.242  Sum_probs=22.6

Q ss_pred             cccCCCCcEEEEeEEc-cCCCCeEEEEECC
Q psy12725         84 ETLNPGPNYYFKCIAS-GNPTPEISWYLDG  112 (119)
Q Consensus        84 ~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~  112 (119)
                      ..+.+|++++|.|... +...+.+.|+|+.
T Consensus        25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~   54 (189)
T PHA02987         25 ITVSEHVNVKISCNKTSSFNSILITWKKNN   54 (189)
T ss_pred             EEEcCCCCEEEEEecCCCCccceEEEEEcC
Confidence            3567899999999974 4456689999864

>PHA03270 envelope glycoprotein C; Provisional

Probab=92.76  E-value=1.8  Score=28.13  Aligned_cols=104  Identities=16%  Similarity=0.254  Sum_probs=53.9

Q ss_pred             CccEEEEEEeccC-C--CCeeEEeeCCccCCCC----------CCCeEEEecCCCCCC------eEEEEEEEcCCCC-ce
Q psy12725          2 LALKFFTCKYEGN-P--VKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDK------GMYQCVIRNEQES-AQ   61 (119)
Q Consensus         2 g~~~~l~c~~~~~-~--~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~~d~------g~y~C~~~~~~~~-~~   61 (119)
                      |+.-.-.|.+..+ |  ...+.||+|+..+...          .+.......++..+.      -+..|.+.-.... ..
T Consensus       234 Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~  313 (466)
T PHA03270        234 GEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSF  313 (466)
T ss_pred             CCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccc
Confidence            7777888999776 4  3378999999876421          111112222333222      3688987532222 12


Q ss_pred             eEeeEEEe-eecCCCeeeecCCccccCCCCcEEEEeEEccCCCC-eEEEEECCE
Q psy12725         62 ASGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGK  113 (119)
Q Consensus        62 ~~~~~~v~-~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~  113 (119)
                      ......+. ..+.+|.+....     ..|   .-.|.+...|.- .+.|+.++.
T Consensus       314 sR~nAa~~P~VY~~P~Isv~F-----~dG---~AVCtA~CVPegV~l~W~V~D~  359 (466)
T PHA03270        314 SRRNATGAPTVLPRPTIEMEF-----GGD---EAVCTAACVPEGVTLAWLLGAD  359 (466)
T ss_pred             eeecccccCccccCCeEEEEE-----eCC---EEEEeccccCCCCEEEEEecCC
Confidence            22222211 113456555432     222   334777666643 789986543

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=92.15  E-value=0.14  Score=25.62  Aligned_cols=26  Identities=12%  Similarity=0.226  Sum_probs=18.9

Q ss_pred             CCCcEEEEeEEcc-CCCCeEEEEECCE
Q psy12725         88 PGPNYYFKCIASG-NPTPEISWYLDGK  113 (119)
Q Consensus        88 ~g~~~~l~C~~~~-~p~~~~~W~~~~~  113 (119)
                      .|++++|.|.... .....+.|++...
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~   29 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTS   29 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCE
Confidence            5889999997654 3344799998643

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=92.13  E-value=1.2  Score=27.90  Aligned_cols=21  Identities=14%  Similarity=0.569  Sum_probs=17.1

Q ss_pred             cEEEEEEeccC-C-CCeeEEeeC
Q psy12725          4 LKFFTCKYEGN-P-VKTISWMKD   24 (119)
Q Consensus         4 ~~~l~c~~~~~-~-~~~v~w~~~   24 (119)
                      .++|+|.+.|. | ...+.|.|+
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            46899999986 4 457899999

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=91.87  E-value=0.6  Score=24.46  Aligned_cols=30  Identities=13%  Similarity=-0.055  Sum_probs=21.2

Q ss_pred             CccccCCCCcEEEEeEEccCC--C-CeEEEEEC
Q psy12725         82 SDETLNPGPNYYFKCIASGNP--T-PEISWYLD  111 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p--~-~~~~W~~~  111 (119)
                      ....+.+|..++|.|...+..  . ..+.|.|.
T Consensus         6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq   38 (115)
T cd05721           6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKG   38 (115)
T ss_pred             CCeEEcCCCCEEEEEEecCCccccEEEEEEEEe
Confidence            344567788899999986653  3 36888874

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=91.54  E-value=0.37  Score=24.95  Aligned_cols=28  Identities=18%  Similarity=0.408  Sum_probs=19.8

Q ss_pred             ccccCCCCcEEEEeEEccCC----CCeEEEEE
Q psy12725         83 DETLNPGPNYYFKCIASGNP----TPEISWYL  110 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p----~~~~~W~~  110 (119)
                      ...+..|+.++|.|......    ...+.|++
T Consensus         7 ~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~   38 (116)
T cd05715           7 EVYAVNGSDVRLKCTFSSSEPISDDISVTWSF   38 (116)
T ss_pred             eEEEEcCCCeEEEeEEeCCCCcCCceEEEEEE
Confidence            34567899999999874332    24699985

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=91.30  E-value=1  Score=22.36  Aligned_cols=55  Identities=13%  Similarity=0.325  Sum_probs=31.6

Q ss_pred             CCccEEEEEEeccC-----CCCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGN-----PVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-----~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      +|..++..|.....     ....+.|.-++..++..       ..+..++.+........|-|....
T Consensus        17 lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~~   83 (89)
T PF06328_consen   17 LGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKLAW   83 (89)
T ss_dssp             TTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEECT
T ss_pred             CCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEEcc
Confidence            58999999998643     34578898887765432       123455555555444556665443

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA03271 envelope glycoprotein C; Provisional

Probab=91.29  E-value=2.8  Score=27.24  Aligned_cols=104  Identities=13%  Similarity=0.265  Sum_probs=53.1

Q ss_pred             CccEEEEEEeccC-C--CCeeEEeeCCccCCCCC---C--------------CeEEEecCCCCCCeEEEEEEEcCCCCce
Q psy12725          2 LALKFFTCKYEGN-P--VKTISWMKDGKPVPDHN---E--------------PVFRIDSVRKEDKGMYQCVIRNEQESAQ   61 (119)
Q Consensus         2 g~~~~l~c~~~~~-~--~~~v~w~~~~~~~~~~~---~--------------~~l~~~~~~~~d~g~y~C~~~~~~~~~~   61 (119)
                      |+.-.-.|.+..+ |  ...+.|++|+.......   .              +++.+.......--..+|.+.-......
T Consensus       260 Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~  339 (490)
T PHA03271        260 GENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMI  339 (490)
T ss_pred             CCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCce
Confidence            7788889999776 4  33689999987664321   0              1122222211223368898754322222


Q ss_pred             eEeeEEEe-eecCCCeeeecCCccccCCCCcEEEEeEEccCCC-CeEEEEECCE
Q psy12725         62 ASGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT-PEISWYLDGK  113 (119)
Q Consensus        62 ~~~~~~v~-~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~~~  113 (119)
                      ......+. ..+.+|.+...     ...|   .-.|.+...|. ..+.|+-++.
T Consensus       340 s~rnAaatP~VY~~P~ISv~-----FedG---~AVCtA~CVP~gV~lrWlVgD~  385 (490)
T PHA03271        340 STTNATAIPTVYHHPRISLA-----FKDG---YAICTIECVPSGITVRWLVHDE  385 (490)
T ss_pred             eeeecccCCccccCCeEEEE-----EeCC---EEEEeccccCCCcEEEEEecCC
Confidence            22222211 11345555542     2233   33477766653 3789985443

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=91.25  E-value=0.3  Score=24.33  Aligned_cols=27  Identities=19%  Similarity=0.174  Sum_probs=20.0

Q ss_pred             cCCCCcEEEEeEEccC-CCCeEEEEECC
Q psy12725         86 LNPGPNYYFKCIASGN-PTPEISWYLDG  112 (119)
Q Consensus        86 ~~~g~~~~l~C~~~~~-p~~~~~W~~~~  112 (119)
                      +.+|++++|.|..... ....+.|++..
T Consensus         4 ~~~G~~vtl~C~~~~~~~~~~~~W~r~~   31 (98)
T cd05716           4 GELGGSVTIPCPYPPKNRSYEKYWCKWG   31 (98)
T ss_pred             EEeCCeEEEEeeCCCCCCCcEeEeECCC
Confidence            5679999999986542 45578999753

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=89.92  E-value=0.7  Score=24.07  Aligned_cols=29  Identities=17%  Similarity=0.233  Sum_probs=20.0

Q ss_pred             ccccCCCCcEEEEeEEccCC------CCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGNP------TPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p------~~~~~W~~~  111 (119)
                      ...+..|+.++|.|......      ...+.|++.
T Consensus         8 ~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq   42 (119)
T cd05712           8 SVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKG   42 (119)
T ss_pred             EEEEeccccEEEEEEeeCcccccCCCceEEEEEeC
Confidence            34577899999999753211      235899975

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=89.32  E-value=1.4  Score=21.90  Aligned_cols=37  Identities=24%  Similarity=0.491  Sum_probs=24.3

Q ss_pred             CCccccCCCCcEEEEeEEccC-----CCCeEEEEECCEEccc
Q psy12725         81 FSDETLNPGPNYYFKCIASGN-----PTPEISWYLDGKKLVN  117 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~-----p~~~~~W~~~~~~~~~  117 (119)
                      +....+..|..++..|.....     ....+.|+.++..+..
T Consensus        10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~   51 (89)
T PF06328_consen   10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPG   51 (89)
T ss_dssp             CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTC
T ss_pred             cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECCh
Confidence            334457789999999987432     3347899987776554

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=89.16  E-value=0.84  Score=23.68  Aligned_cols=28  Identities=25%  Similarity=0.460  Sum_probs=19.5

Q ss_pred             ccccCCCCcEEEEeEEccCC----CCeEEEEE
Q psy12725         83 DETLNPGPNYYFKCIASGNP----TPEISWYL  110 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p----~~~~~W~~  110 (119)
                      ...+..|+.+.|.|.....+    ...+.|++
T Consensus         7 ~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~   38 (115)
T cd05880           7 EVEAVNGTDVRLKCTFSSSAPIGDTLVITWNF   38 (115)
T ss_pred             eEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEE
Confidence            34567899999999865332    23699974

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>PHA03269 envelope glycoprotein C; Provisional

Probab=88.40  E-value=5.6  Score=26.51  Aligned_cols=104  Identities=13%  Similarity=0.232  Sum_probs=53.5

Q ss_pred             CccEEEEEEeccC-C--CCeeEEeeCCccCCCC----------CCCeEEEecCCC-----CC--CeEEEEEEEc-CCCCc
Q psy12725          2 LALKFFTCKYEGN-P--VKTISWMKDGKPVPDH----------NEPVFRIDSVRK-----ED--KGMYQCVIRN-EQESA   60 (119)
Q Consensus         2 g~~~~l~c~~~~~-~--~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~-----~d--~g~y~C~~~~-~~~~~   60 (119)
                      |+.-.-.|.+..+ |  ...+.||+|+..+...          .+..-.+..++.     .+  --..+|.+.- ..+..
T Consensus       342 Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS  421 (566)
T PHA03269        342 GNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVS  421 (566)
T ss_pred             CCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCch
Confidence            7788889999776 3  3378999997766421          111112222222     11  2346897653 22222


Q ss_pred             eeEeeEEEe-eecCCCeeeecCCccccCCCCcEEEEeEEccCCC--CeEEEEECCE
Q psy12725         61 QASGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT--PEISWYLDGK  113 (119)
Q Consensus        61 ~~~~~~~v~-~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~~  113 (119)
                      .......+. ..+.+|.+....     ..|   ...|.+...|.  ..+.|+.++.
T Consensus       422 ~tRfnAaatP~VY~~PtISm~F-----edG---~AVCtA~CVP~~~V~l~WlVgD~  469 (566)
T PHA03269        422 HMKYSAAVTPDVYPFPNVSIEI-----IDG---HIVCLAKCVPRGVVHFNWWINDI  469 (566)
T ss_pred             heecccccCCccccCCeEEEEE-----eCC---EEEEecccccCCCceEEEEecCC
Confidence            222222221 113456555432     223   34488777765  3789986543

>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines

Probab=87.07  E-value=1.5  Score=20.44  Aligned_cols=44  Identities=18%  Similarity=0.361  Sum_probs=24.6

Q ss_pred             EEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          6 FFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         6 ~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      +|.|...  ....++||-|+..+-.-....+.+..    -.++|+|+-..
T Consensus         2 tltC~s~--~sLPiswYcN~TRLlRlt~~Tlt~~~----ltcNFtCV~qS   45 (71)
T PF11049_consen    2 TLTCPSN--ASLPISWYCNGTRLLRLTQQTLTVVT----LTCNFTCVGQS   45 (71)
T ss_pred             ceecCCC--CCCcccEEECCceeeeecCCeEeeee----eeEEeeecCCC
Confidence            3566543  34458999998876443444444321    13566775543

This domain would appear to be the cytoplasmic region of the protein [].

>PHA03273 envelope glycoprotein C; Provisional

Probab=86.39  E-value=7.4  Score=25.74  Aligned_cols=103  Identities=18%  Similarity=0.235  Sum_probs=54.6

Q ss_pred             CccEEEEEEeccC-C--CCeeEEeeCCccCCC-C----------CC-----CeEEEecCCC-CCCeEEEEEEEcCCCC-c
Q psy12725          2 LALKFFTCKYEGN-P--VKTISWMKDGKPVPD-H----------NE-----PVFRIDSVRK-EDKGMYQCVIRNEQES-A   60 (119)
Q Consensus         2 g~~~~l~c~~~~~-~--~~~v~w~~~~~~~~~-~----------~~-----~~l~~~~~~~-~d~g~y~C~~~~~~~~-~   60 (119)
                      |+.-.-.|.+..+ |  ...+.||+|+..+.. .          .+     +.+.+..... ..--..+|.+.-.... .
T Consensus       250 Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS  329 (486)
T PHA03273        250 GENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVS  329 (486)
T ss_pred             CCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcc
Confidence            7778888999776 4  337899999987762 1          11     1222222211 2234688987533222 2


Q ss_pred             eeEeeEEE-eeecCCCeeeecCCccccCCCCcEEEEeEEccCCC--CeEEEEECC
Q psy12725         61 QASGELKL-GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT--PEISWYLDG  112 (119)
Q Consensus        61 ~~~~~~~v-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~  112 (119)
                      .......+ ...+.+|.+....     ..|   ...|.+...|.  ..+.|+.++
T Consensus       330 ~~RfsAt~~P~Vy~~P~Is~~F-----~~G---~AVCtA~CVP~egV~l~W~v~D  376 (486)
T PHA03273        330 FARIAKAGTPSVFVAPTVSVTV-----EDG---DAVCTAKCVPSTGVFVSWSVND  376 (486)
T ss_pred             eeeccccccCccccCCeEEEEE-----eCC---EEEEecccccCCCeeEEEEccC
Confidence            22212121 1113456555432     222   34588877765  478998544

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=83.07  E-value=4.6  Score=20.53  Aligned_cols=51  Identities=22%  Similarity=0.552  Sum_probs=28.6

Q ss_pred             EEEEE-eccCCCCeeEEeeC--Ccc----CCCCCC-----CeEEEecCCCCCCeEEEEEEEcC
Q psy12725          6 FFTCK-YEGNPVKTISWMKD--GKP----VPDHNE-----PVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         6 ~l~c~-~~~~~~~~v~w~~~--~~~----~~~~~~-----~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .-.|. ..|.|...|+|..+  |..    .....+     +.+.+-.....|....+|++.+.
T Consensus        24 VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~   86 (98)
T cd05890          24 VATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYR   86 (98)
T ss_pred             EEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEec
Confidence            45677 46778899999742  221    111111     22333334455666788888775

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	119
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		2e-45
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		2e-22
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		1e-04
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		2e-22
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		1e-04
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		3e-22
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		1e-04
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		5e-09
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		5e-09
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		5e-09
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		6e-09
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		9e-09
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		5e-08
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		5e-08
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		1e-07
3kld_A	384	Ptprg Cntn4 Complex Length = 384		1e-07
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		1e-07
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-07
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		3e-07
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		4e-07
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		9e-07
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		9e-07
3k0w_A	218	Crystal Structure Of The Tandem Ig-Like C2-Type 2 D		1e-06
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		3e-06
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		3e-06
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-06
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		3e-06
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		3e-06
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		4e-06
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		9e-06
1ii4_E	220	Crystal Structure Of Ser252trp Apert Mutant Fgf Rec		1e-05
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-05
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		1e-05
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		1e-05
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-05
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-05
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		2e-05
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		2e-05
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		3e-05
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		3e-05
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		3e-05
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		3e-05
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		3e-05
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		8e-05
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		8e-05
1djs_A	216	Ligand-binding Portion Of Fibroblast Growth Factor		1e-04
1nun_B	230	Crystal Structure Analysis Of The Fgf10-fgfr2b Comp		1e-04
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		1e-04
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		2e-04
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		2e-04
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		2e-04
2xy2_A	189	Crystal Structure Of Ncam2 Ig1-2 Length = 189		4e-04
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		5e-04
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		5e-04
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		5e-04
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		5e-04
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		8e-04

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score =  177 bits (448), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 76/112 (67%), Positives = 96/112 (85%), Gaps = 1/112 (0%)
Query: 6   FFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
            FTC+Y GNP+KT+SWMKDGK +  H+E V RI+SV+KEDKGMYQC +RN++ESA+AS E
Sbjct: 362 VFTCQYTGNPIKTVSWMKDGKAI-GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAE 420
Query: 66  LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
           LKLGGRFDPPVI+++F +ET+ PGP+ + KC+A GNPTPEISW LDGKK+ N
Sbjct: 421 LKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN 472

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/63 (69%), Positives = 55/63 (87%), Gaps = 1/63 (1%)
Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
           FTC+Y GNP+KT+SWMKDGK +  H+E V RI+SV+KEDKGMYQC +RN++ESA+AS EL
Sbjct: 327 FTCQYTGNPIKTVSWMKDGKAI-GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 385
Query: 67  KLG 69
           KLG
Sbjct: 386 KLG 388

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 44  EDKGMYQCVIRNEQESAQASGELK----LGGRFDPPVIKESFSDETLNPGPNYYFKCIAS 99
           ED G Y CV+ N          L     L  + DPP        +T++ G    F C  +
Sbjct: 280 EDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT-------QTVDFGRPAVFTCQYT 332
Query: 100 GNPTPEISWYLDGKKLVNAE 119
           GNP   +SW  DGK + ++E
Sbjct: 333 GNPIKTVSWMKDGKAIGHSE 352

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/63 (69%), Positives = 55/63 (87%), Gaps = 1/63 (1%)
Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
           FTC+Y GNP+KT+SWMKDGK +  H+E V RI+SV+KEDKGMYQC +RN++ESA+AS EL
Sbjct: 333 FTCQYTGNPIKTVSWMKDGKAI-GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 391
Query: 67  KLG 69
           KLG
Sbjct: 392 KLG 394

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 44  EDKGMYQCVIRNEQESAQASGELK----LGGRFDPPVIKESFSDETLNPGPNYYFKCIAS 99
           ED G Y CV+ N          L     L  + DPP        +T++ G    F C  +
Sbjct: 286 EDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT-------QTVDFGRPAVFTCQYT 338
Query: 100 GNPTPEISWYLDGKKLVNAE 119
           GNP   +SW  DGK + ++E
Sbjct: 339 GNPIKTVSWMKDGKAIGHSE 358

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 44/63 (69%), Positives = 55/63 (87%), Gaps = 1/63 (1%)
Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
           FTC+Y GNP+KT+SWMKDGK +  H+E V RI+SV+KEDKGMYQC +RN++ESA+AS EL
Sbjct: 330 FTCQYTGNPIKTVSWMKDGKAI-GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 388
Query: 67  KLG 69
           KLG
Sbjct: 389 KLG 391

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 44  EDKGMYQCVIRNEQESAQASGELK----LGGRFDPPVIKESFSDETLNPGPNYYFKCIAS 99
           ED G Y CV+ N          L     L  + DPP        +T++ G    F C  +
Sbjct: 283 EDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPT-------QTVDFGRPAVFTCQYT 335
Query: 100 GNPTPEISWYLDGKKLVNAE 119
           GNP   +SW  DGK + ++E
Sbjct: 336 GNPIKTVSWMKDGKAIGHSE 355

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 9   CKYEGNPVKTISWMK-DGKPVPDHN--EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
           C   GNPV  I W K DG   P     EP  +I SV  ED+G Y+C   N +      G 
Sbjct: 228 CFAFGNPVPRIKWRKVDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGR 287
Query: 66  LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
           + +  +   P   +  SD   + G N  + C A+G P P + W  +G+ L +
Sbjct: 288 IIVQAQ---PEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLAS 336

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 7   FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
           F C   G P  T+ W+K+GK   PDH    +++         DSV   DKG Y C++ NE
Sbjct: 37  FKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENE 96
Query: 57  QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
             S   + +L +  R    P+++    +++T+  G N  F C    +P P I W
Sbjct: 97  YGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQW 150

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 7   FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
           F C   G P  T+ W+K+GK   PDH    +++         DSV   DKG Y C++ NE
Sbjct: 36  FKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENE 95
Query: 57  QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
             S   + +L +  R    P+++    +++T+  G N  F C    +P P I W
Sbjct: 96  YGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQW 149

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 7   FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
           F C   G P  T+ W+K+GK   PDH    +++         DSV   DKG Y C++ NE
Sbjct: 36  FKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENE 95
Query: 57  QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
             S   + +L +  R    P+++    +++T+  G N  F C    +P P I W
Sbjct: 96  YGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQW 149

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 9   CKYEGNPVKTISWMK-DGKPVPD--HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
           C   GNPV  I W K DG        +EP+  I +V  ED+G Y+C   N +      G 
Sbjct: 229 CFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR 288
Query: 66  LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
           + +  +   P   +  +D   + G +  + C+ASG P P + W  DG+ L +
Sbjct: 289 IIIHAQ---PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS 337

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 50/122 (40%), Gaps = 19/122 (15%)
Query: 7   FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVR-KEDKGMYQCVIRN 55
           F C+  G P   I+WMK GK V           D    V RI  +R + D+ +Y+C   N
Sbjct: 27  FVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATN 86
Query: 56  EQESAQASGEL------KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY 109
                  S +L      +L   F  P I      + +  G      C A GNP PEISW+
Sbjct: 87  SLGEINTSAKLSVLEEDQLPSGF--PTIDMGPQLKVVEKGRTATMLCAAGGNPDPEISWF 144
Query: 110 LD 111
            D
Sbjct: 145 KD 146

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 6   FFTCKYEGNPVKTISWMK---DGKPVPDHNEPV------FRIDSVRKEDKGMYQCVIRNE 56
              C+  G+P+ TI W K   D  P+P  +  V       +I  ++  D G+Y+C  RN 
Sbjct: 140 LLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNP 199
Query: 57  QESAQASGELKLGGRFDPPVIKESF-----SDETLNPGPNYYFKCIASGNPTPEISWYLD 111
             S +   E ++    DP + ++ +     S+     G +   +C  SG P P  +W L 
Sbjct: 200 -ASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTW-LR 257
Query: 112 GKKLV 116
           G++++
Sbjct: 258 GEEVI 262

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 9   CKYEGNPVKTISWMK-DGKPVP-----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
           C   GNPV TI W + DGKP+        +  +  I + ++ED G Y+CV  N +    A
Sbjct: 226 CFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVA 285
Query: 63  SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
            G+L     +  P   +  +D  +    + +++C A+G P P   W  +G  L+
Sbjct: 286 KGQLTF---YAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLL 336

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 9   CKYEGNPVKTISWMK-DGKPVP-----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
           C   GNPV TI W + DGKP+        +  +  I + ++ED G Y+CV  N +    A
Sbjct: 227 CFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVA 286
Query: 63  SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
            G+L     +  P   +  +D  +    + +++C A+G P P   W  +G  L+
Sbjct: 287 KGQLTF---YAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLL 337

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 6   FFTCKYEGNPVKTISWMKDGKPVP------DHNEPVFRIDSVRKEDKGMYQCVIRNEQES 59
              C   G P   I+W K G  +P      ++     RI +V +ED G Y C+  N+  S
Sbjct: 241 LLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGS 300
Query: 60  AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA 118
            + +  +++      P   +   +  L PG +    C A+GNP P + W ++G+ L +A
Sbjct: 301 IRHTISVRVKAA---PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSA 356

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 7   FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVR-KEDKGMYQCVIRN 55
           F C+  G P   I+WMK GK V           D    V RI  +R + D+ +Y+C   N
Sbjct: 26  FVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATN 85
Query: 56  EQESAQASGELKL--GGRFDP--PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111
                  S +L +    +  P  P I      + +         C A GNP PEISW+ D
Sbjct: 86  SLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKD 145

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 11/120 (9%)
Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRID-----------SVRKEDKGMYQCVIRN 55
           F     G PV  +SW +DG+ +     P  +I            +V K + G Y     N
Sbjct: 25  FEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATN 84
Query: 56  EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
               A ++ EL +     PP   +     T+  G     +   +G PTP + +Y DG ++
Sbjct: 85  GSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEI 144

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 11/120 (9%)
Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRID-----------SVRKEDKGMYQCVIRN 55
           F     G PV  +SW +DG+ +     P  +I            +V K + G Y     N
Sbjct: 25  FEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATN 84
Query: 56  EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
               A ++ EL +     PP   +     T+  G     +   +G PTP + +Y DG ++
Sbjct: 85  GSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEI 144

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 31/128 (24%)
Query: 7   FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRK-EDKGMYQCVIRN 55
           F C+  G+P   I W K GK V           D +  V RI  +R   D+ +Y+CV  N
Sbjct: 26  FICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASN 85
Query: 56  EQESAQASGELKLGGRFDPPVIKESFSDE---TLNPGPNY---------YFKCIASGNPT 103
                   GE+ +  R    V++E        T++ GP              C ASGNP 
Sbjct: 86  N------VGEISVSTRLT--VLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 104 PEISWYLD 111
           PEI+W+ D
Sbjct: 138 PEITWFKD 145

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 9/118 (7%)
Query: 7   FTCKYEGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
           F C+  G+    +SW KDG+ + D         HN    +I    +   G Y C   N  
Sbjct: 121 FECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPL 180
Query: 58  ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
            +A +S +L L     PP          L  G +  FKC  +G    +I+W  D +++
Sbjct: 181 GTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREI 238

>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma Translocation Protein 1 Length = 218

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 25/129 (19%)
Query: 1   MLALKF--FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQE 58
           +LA +F    C+  G+P     W K  K +P+ N      ++V  +D G Y C + N   
Sbjct: 30  VLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNN-- 87
Query: 59  SAQASGELKLGGRFDPPVIKESF------------------SDETLNPGPNYYFKCIASG 100
               + E     + D   I ESF                  + + L PG     +C+A G
Sbjct: 88  ---FTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVG 144
Query: 101 NPTPEISWY 109
           +P P   W+
Sbjct: 145 SPIPHYQWF 153

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 7   FTCKYEGNPVKTISWMKDGKPVPD----------HNEPVFRIDSVRKEDKGMYQCVIRNE 56
           F C   GNP  +ISW+K+G+              H +    ++SV   D+G Y CV+ N+
Sbjct: 143 FRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENK 202
Query: 57  QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
             S + +  L +  R    P+++    +++T   G +  F C    +  P I W
Sbjct: 203 FGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 256

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 17/130 (13%)
Query: 3   ALKFFTCKYEGNPVKTISWMKDGKPVPDHNE-----------PVFRIDSVRK-EDKGMYQ 50
            +  F C   G+P  +I W K+GK V                 + RI+ VR   D   Y+
Sbjct: 24  GVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYE 83
Query: 51  CVIRN---EQESAQASGELKLGGRFDP--PVIKESFSDETLNPGPNYYFKCIASGNPTPE 105
           CV  N   +  SA A+  +  G +     PVI +      +  G      C A GNPTP 
Sbjct: 84  CVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPN 143
Query: 106 ISWYLDGKKL 115
           I W  +  K+
Sbjct: 144 IYWIKNQTKV 153

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 17/130 (13%)
Query: 3   ALKFFTCKYEGNPVKTISWMKDGKPVPDHNE-----------PVFRIDSVRK-EDKGMYQ 50
            +  F C   G+P  +I W K+GK V                 + RI+ VR   D   Y+
Sbjct: 22  GVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYE 81
Query: 51  CVIRN---EQESAQASGELKLGGRFDP--PVIKESFSDETLNPGPNYYFKCIASGNPTPE 105
           CV  N   +  SA A+  +  G +     PVI +      +  G      C A GNPTP 
Sbjct: 82  CVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPN 141
Query: 106 ISWYLDGKKL 115
           I W  +  K+
Sbjct: 142 IYWIKNQTKV 151

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 7   FTCKYEGNPVKTISWMKDGKPVPD----------HNEPVFRIDSVRKEDKGMYQCVIRNE 56
           F C   GNP  +ISW+K+G+              H +    ++SV   D+G Y CV+ N+
Sbjct: 35  FRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENK 94
Query: 57  QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
             S + +  L +  R    P+++    +++T   G +  F C    +  P I W
Sbjct: 95  FGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 148

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 5   KFFTCKYEGNPVKTISWMK-DGKPVPDHNEPVFRIDSVRK---------EDKGMYQCVIR 54
           KFFTC   G P ++I W    G+ +      V + + VR          ED G+Y+C   
Sbjct: 22  KFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQAT 80
Query: 55  NEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
           + + ++ +A+  L++   +     +E  S +    G +    C  S +P P +SW    +
Sbjct: 81  DAKGQTQEATVVLEI---YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNE 137
Query: 114 KLVN 117
           ++  
Sbjct: 138 EVTT 141

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 54/130 (41%), Gaps = 35/130 (26%)
Query: 8   TCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVR---------------KEDKGMYQCV 52
            C+   +P   +SW+        HNE V  I   R               K D+G+Y+C 
Sbjct: 23  VCRVSSSPAPAVSWLY-------HNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCE 75
Query: 53  IRNEQESAQASGELKLGGRFD----PPVI---KESFSDETLNPGPNYYFKCIASGNPTPE 105
            R E     A GE+           PP I   ++SF + T   G    F C ASG+P P 
Sbjct: 76  GRVE-----ARGEIDFRDIIVIVNVPPAISMPQKSF-NATAERGEEMTFSCRASGSPEPA 129
Query: 106 ISWYLDGKKL 115
           ISW+ +GK +
Sbjct: 130 ISWFRNGKLI 139

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 57/129 (44%), Gaps = 24/129 (18%)
Query: 7   FTCKYEGNPVKTISWMKDGKPV-PDHNEP-------------VFRIDSVRKE--DKGMYQ 50
             CK EG P  TI W K G+ V  D ++P               RI   RK   D+G+Y 
Sbjct: 29  LNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV 88
Query: 51  CVIRN---EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI-ASGNPTPEI 106
           CV RN   E  S  AS E+ +  R D    +++ SD  +  G     +C    G+P P I
Sbjct: 89  CVARNYLGEAVSHDASLEVAI-LRDD---FRQNPSDVMVAVGEPAVMECQPPRGHPEPTI 144
Query: 107 SWYLDGKKL 115
           SW  DG  L
Sbjct: 145 SWKKDGSPL 153

>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 7   FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
           F C   GNP+ T+ W+K+GK    +H    +++         +SV   DKG Y CV+ NE
Sbjct: 31  FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 90
Query: 57  QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
             S   +  L +  R+   P+++    ++ +   G +  F C    +  P I W
Sbjct: 91  YGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 144

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 31/128 (24%)
Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRK-EDKGMYQCVIRN 55
           F C+  G+P   ++W K GK V                V RI  +R   D+ +Y+CV +N
Sbjct: 26  FVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQN 85
Query: 56  EQESAQASGELKLGGRFDPPVIKE-----SFSDETLNPGPNYYFK-------CIASGNPT 103
                 + GE+ +  +    V++E      F +  + P      +       C ASGNP 
Sbjct: 86  ------SVGEITVHAKLT--VLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 104 PEISWYLD 111
           PEI+W+ D
Sbjct: 138 PEITWFKD 145

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 31/128 (24%)
Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRK-EDKGMYQCVIRN 55
           F C+  G+P   ++W K GK V                V RI  +R   D+ +Y+CV +N
Sbjct: 26  FVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQN 85
Query: 56  EQESAQASGELKLGGRFDPPVIKE-----SFSDETLNPGPNYYFK-------CIASGNPT 103
                 + GE+ +  +    V++E      F +  + P      +       C ASGNP 
Sbjct: 86  ------SVGEITVHAKLT--VLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 104 PEISWYLD 111
           PEI+W+ D
Sbjct: 138 PEITWFKD 145

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 15/125 (12%)
Query: 7   FTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
            +C+  G P+  I W + GK +          D       + +  +ED+G+Y C+  NE 
Sbjct: 27  LSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEV 86
Query: 58  ESAQASGELKLGG--RFDPPV-IKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114
              + S +L L    +F P   +KE +       G       +  G P P ++W+   K 
Sbjct: 87  GEVETSSKLLLQATPQFHPGYPLKEKYYGAV---GSTLRLHVMYIGRPVPAMTWFHGQKL 143
Query: 115 LVNAE 119
           L N+E
Sbjct: 144 LQNSE 148

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 31/128 (24%)
Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRK-EDKGMYQCVIRN 55
           F C+  G+P   ++W K GK V                V RI  +R   D+ +Y+CV +N
Sbjct: 26  FVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQN 85
Query: 56  EQESAQASGELKLGGRFDPPVIKE-----SFSDETLNPGPNYYFK-------CIASGNPT 103
                 + GE+ +  +    V++E      F +  + P      +       C ASGNP 
Sbjct: 86  ------SVGEITVHAKLT--VLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 104 PEISWYLD 111
           PEI+W+ D
Sbjct: 138 PEITWFKD 145

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 39/132 (29%)
Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRK-EDKGMYQCVIRN 55
           F C+  G+P   ++W K GK V                V RI  +R   D+ +Y+CV +N
Sbjct: 26  FVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIYECVAQN 85
Query: 56  EQESAQASGELKLGGRFDPPVIKESFSDETLNPG-PNY---------------YFKCIAS 99
                   GE+ +  +    V++E    + L PG PN                   C AS
Sbjct: 86  PH------GEVTVHAKLT--VLRE----DQLPPGFPNIDMGPQLKVVERTRTATMLCAAS 133
Query: 100 GNPTPEISWYLD 111
           GNP PEI+W+ D
Sbjct: 134 GNPDPEITWFKD 145

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------IDSVRKEDKGMYQCVIRNEQES 59
           F+C+  G+P   ISW ++GK + ++ + + +       + ++   D G Y C   N+   
Sbjct: 24  FSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGE 83
Query: 60  AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 108
            +    L++     P +I+    +ET          C A G P PEI+W
Sbjct: 84  DEKQAFLQV--FVQPHIIQ--LKNETTYENGQVTLVCDAEGEPIPEITW 128

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 7   FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
           F C   GNP+ T+ W+K+GK    +H    +++         +SV   DKG Y CV+ NE
Sbjct: 29  FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 88
Query: 57  QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
             S   +  L +  R    P+++    ++ +   G +  F C    +  P I W
Sbjct: 89  YGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 142

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 7   FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
           F C   GNP+ T+ W+K+GK    +H    +++         +SV   DKG Y CV+ NE
Sbjct: 30  FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 89
Query: 57  QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
             S   +  L +  R    P+++    ++ +   G +  F C    +  P I W
Sbjct: 90  YGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 143

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 7   FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
           F C   GNP+ T+ W+K+GK    +H    +++         +SV   DKG Y CV+ NE
Sbjct: 31  FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 90
Query: 57  QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
             S   +  L +  R    P+++    ++ +   G +  F C    +  P I W
Sbjct: 91  YGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 144

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 7   FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
           F C   GNP+ T+ W+K+GK    +H    +++         +SV   DKG Y CV+ NE
Sbjct: 31  FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 90
Query: 57  QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
             S   +  L +  R    P+++    ++ +   G +  F C    +  P I W
Sbjct: 91  YGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 144

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 7   FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
           F C   GNP+ T+ W+K+GK    +H    +++         +SV   DKG Y CV+ NE
Sbjct: 39  FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 98
Query: 57  QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
             S   +  L +  R    P+++    ++ +   G +  F C    +  P I W
Sbjct: 99  YGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 152

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 7   FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
           F C   GNP+ T+ W+K+GK    +H    +++         +SV   DKG Y CV+ NE
Sbjct: 39  FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 98
Query: 57  QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
             S   +  L +  R    P+++    ++ +   G +  F C    +  P I W
Sbjct: 99  YGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 152

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 25/128 (19%)
Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI-------------DSVRKEDKGMYQCVI 53
             CK EG P  TI W KDG+PV  + +   R+                +++D G Y CV 
Sbjct: 29  LNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVA 88
Query: 54  RNE-QESAQASGELKLGGRFDPPVIKESF----SDETLNPGPNYYFKC-IASGNPTPEIS 107
           +N   ++      L++       V+++ F     D  +  G     +C    G P P + 
Sbjct: 89  KNRVGQAVSRHASLQIA------VLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLI 142
Query: 108 WYLDGKKL 115
           W  DG  L
Sbjct: 143 WIKDGVPL 150

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 25/128 (19%)
Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI-------------DSVRKEDKGMYQCVI 53
             CK EG P  TI W KDG+PV  + +   R+                +++D G Y CV 
Sbjct: 29  LNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVA 88
Query: 54  RNE-QESAQASGELKLGGRFDPPVIKESF----SDETLNPGPNYYFKC-IASGNPTPEIS 107
           +N   ++      L++       V+++ F     D  +  G     +C    G P P + 
Sbjct: 89  KNRVGQAVSRHASLQIA------VLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLI 142
Query: 108 WYLDGKKL 115
           W  DG  L
Sbjct: 143 WIKDGVPL 150

>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor Receptor 2 In Complex With Fgf1 Length = 216

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 7   FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
           F C   GNP  T  W+K+GK    +H    +++         +SV   DKG Y CV+ NE
Sbjct: 31  FRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENE 90
Query: 57  QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
             S   +  L +  R    P+++    ++ +   G +  F C    +  P I W
Sbjct: 91  YGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 144

>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex Length = 230

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 7   FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
           F C   GNP  T  W+K+GK    +H    +++         +SV   DKG Y CV+ NE
Sbjct: 38  FRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENE 97
Query: 57  QESAQASGELKLGGRF-DPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISW 108
             S   +  L +  R    P+++    ++ +   G +  F C    +  P I W
Sbjct: 98  YGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQW 151

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNE---------PVFRIDSVRKEDKGMYQCVIRNEQ 57
           + CK  G+P   + W KD   + + ++          V  + ++  ED G Y C   N  
Sbjct: 119 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 178
Query: 58  ESAQASGELKLGGRFDPPVI-KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
            SA +S  LK+    +PPV  K+    ETL  G + + +C   G P  ++SW+ D ++L
Sbjct: 179 GSASSSTSLKVK---EPPVFRKKPHPVETLK-GADVHLECELQGTPPFQVSWHKDKREL 233

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNE---------PVFRIDSVRKEDKGMYQCVIRNEQ 57
           + CK  G+P   + W KD   + + ++          V  + ++  ED G Y C   N  
Sbjct: 119 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 178
Query: 58  ESAQASGELKLGGRFDPPVI-KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
            SA +S  LK+    +PPV  K+    ETL  G + + +C   G P  ++SW+ D ++L
Sbjct: 179 GSASSSTSLKVK---EPPVFRKKPHPVETLK-GADVHLECELQGTPPFQVSWHKDKREL 233

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 35  VFRIDSVRKEDKGMYQCVIRNEQESAQ--ASGELKLGGRFDPPVIKESFSDETLNPGPNY 92
           +  + +   +D+G Y C+ ++ +   +     +L +  R   P I  +  ++T + G + 
Sbjct: 626 IMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERV-APTITGNLENQTTSIGESI 684
Query: 93  YFKCIASGNPTPEISWYLDGKKLV 116
              C ASGNP P+I W+ D + LV
Sbjct: 685 EVSCTASGNPPPQIMWFKDNETLV 708

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 40  SVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDP--PVIKESFSDETLNPGPNYYFKCI 97
           SV + D G Y+C I+NE  S   S  + L   + P  P I  S++     PG N    C 
Sbjct: 348 SVTRNDVGPYECGIQNEL-SVDHSDPVILNVLYGPDDPTISPSYT--YYRPGVNLSLSCH 404
Query: 98  ASGNPTPEISWYLDG 112
           A+ NP  + SW +DG
Sbjct: 405 AASNPPAQYSWLIDG 419

>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2 Length = 189

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 5   KFFTCKYEGNPVKTISWMK-DGKPVPDHNEPVFRIDSVRK---------EDKGMYQCVIR 54
           KFFTC   G P ++I W    G+ +      V + + VR          ED G+Y+C   
Sbjct: 20  KFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQAT 78
Query: 55  NEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 108
           + + ++ +A+  L++   +     +E  S +    G +    C  S +P P +SW
Sbjct: 79  DAKGQTQEATVVLEI---YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSW 130

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 7   FTCKYEGNPVKTISWMKDGKPVPD---HN------EPVFRIDSVRKEDKGMYQCVIRNEQ 57
           F+C  +G PV T++W++ G+ +     H       +  F I SV+  D+G Y  V+ N +
Sbjct: 34  FSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSE 93
Query: 58  ESAQASGELKL 68
              +A   L +
Sbjct: 94  GKQEAEFTLTI 104

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 12/111 (10%)
Query: 7   FTCKYEGNPVKTISWMK--------DGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQE 58
           F C  E  P   ISW +        D +     N  +  I SV   D G+Y C   N   
Sbjct: 27  FMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVG 86
Query: 59  SA-QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 108
            A ++ G L++  +  P + +   + + +  G      C   GNP P +SW
Sbjct: 87  GAVESCGALQV--KMKPKITRPPINVKIIE-GLKAVLPCTTMGNPKPSVSW 134

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 9/111 (8%)
Query: 18  TISWMKDGKPVPDHNEPVF--------RIDSVRKEDKGMYQCVIRNEQESAQASGELKLG 69
           TI W   G+ V    +  F        +I  ++K D+G Y+C  R          ++++ 
Sbjct: 131 TIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
Query: 70  GRFDPPV-IKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
               P V  ++S  + T N G +    C A G P P +SW  DG+ + N E
Sbjct: 191 VNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEE 241

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 7  FTCKYEGNPVKTISWMKDGKPVPD---HN------EPVFRIDSVRKEDKGMYQCVIRNEQ 57
          F+C  +G PV T++W++ G+ +     H       +  F I SV+  D+G Y  V+ N +
Sbjct: 28 FSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSE 87
Query: 58 ESAQASGELKL 68
             +A   L +
Sbjct: 88 GKQEAEFTLTI 98

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
            P I  +  ++T + G +    C ASGNP P+I W+ D + LV
Sbjct: 10  APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLV 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-40
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-25
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-23
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-23
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-22
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	9e-18
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-16
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-15
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-11
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-35
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	5e-14
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	7e-08
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-33
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-11
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	8e-06
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-33
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-23
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-11
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	9e-33
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-32
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	9e-26
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-25
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-25
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-12
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	9e-11
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-32
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-09
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-06
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-31
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-26
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-13
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-10
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	4e-31
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-11
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-08
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	9e-30
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-10
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	8e-07
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-29
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	5e-20
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-08
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-28
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	6e-21
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-08
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-06
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-27
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-27
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	7e-25
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-23
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-21
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-16
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-11
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-27
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	9e-13
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	6e-11
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-27
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	4e-26
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-13
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-06
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	4e-27
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-14
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	5e-08
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	4e-27
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-12
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	7e-09
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	5e-27
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	6e-27
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-14
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	4e-09
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	9e-27
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-23
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-21
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-14
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	6e-11
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-26
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-11
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-09
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-26
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	5e-12
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-09
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-26
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	7e-22
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-19
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-17
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-08
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-26
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	7e-19
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-18
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-15
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	5e-12
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	7e-26
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-21
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-19
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-17
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-07
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	9e-26
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-21
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	4e-15
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	9e-15
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-08
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-25
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-15
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-25
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-10
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-08
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-25
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	9e-14
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-09
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	6e-25
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	7e-13
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	4e-24
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-20
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-12
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-23
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-19
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-19
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-18
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-09
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-23
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-21
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-20
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-20
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-13
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	7e-13
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-11
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-09
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-23
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-13
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-05
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	5e-23
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-10
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	7e-07
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	6e-23
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	5e-12
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	7e-10
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-22
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-12
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-07
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-22
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-20
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-08
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-22
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	5e-22
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	5e-18
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-16
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	5e-09
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-22
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-21
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-18
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-12
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	7e-10
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-22
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	5e-13
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-04
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-21
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	4e-10
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	5e-10
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-21
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	5e-20
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-05
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	4e-04
2ens_A	96	Advanced glycosylation END product-specific recept	4e-21
2ens_A	96	Advanced glycosylation END product-specific recept	3e-08
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	8e-21
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-10
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-05
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-20
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	8e-10
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-04
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	1e-20
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	1e-09
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-20
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-19
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-16
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-10
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-07
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-19
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	7e-07
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-19
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-10
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	6e-10
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	5e-19
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-14
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-06
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	6e-19
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-16
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	4e-11
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	7e-19
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	6e-17
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-07
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-18
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	9e-16
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-10
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-05
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-18
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-14
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-08
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-04
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	5e-18
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	5e-04
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	9e-18
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-08
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-17
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-11
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-17
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-15
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	4e-10
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-17
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	3e-09
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	7e-17
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-10
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	5e-10
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	5e-09
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	7e-08
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	7e-17
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	5e-15
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	8e-05
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-04
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	7e-17
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-11
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-09
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	7e-17
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	6e-12
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-16
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	3e-16
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-09
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	4e-16
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-07
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	4e-16
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-10
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	4e-16
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-11
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-15
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-08
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-15
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-08
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	1e-15
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	4e-10
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-15
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-11
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	9e-09
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	5e-15
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	4e-09
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	6e-15
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	4e-08
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	7e-15
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	1e-06
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	7e-15
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	3e-05
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-14
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	7e-09
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	1e-14
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	5e-11
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	3e-04
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-14
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	1e-10
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-14
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-09
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-14
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	7e-14
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-06
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	3e-14
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	3e-13
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-06
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-05
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	4e-14
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	5e-09
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	4e-14
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	7e-07
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	4e-14
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	4e-08
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	7e-14
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-08
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	8e-14
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-06
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	9e-14
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-10
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-13
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-07
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	3e-13
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	6e-09
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-13
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	7e-08
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	4e-13
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	3e-05
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	5e-13
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	6e-07
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	5e-13
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-09
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	5e-13
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	8e-07
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	6e-13
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	7e-05
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	9e-13
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	3e-09
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-12
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-10
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	5e-07
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-06
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	7e-05
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	4e-12
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	4e-05
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	4e-12
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	5e-07
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	5e-12
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	3e-04
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	5e-12
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	9e-07
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	9e-12
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	1e-11
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	3e-09
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-11
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	5e-08
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-11
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	1e-06
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	4e-11
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	4e-08
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	9e-11
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	6e-05
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-10
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	6e-09
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-10
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-04
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	5e-10
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	3e-09
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	7e-10
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-04
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	8e-10
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	9e-10
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	5e-08
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	9e-10
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	1e-05
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	1e-09
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-09
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	4e-06
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-09
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-04
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	2e-09
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	4e-04
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-09
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-04
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	2e-09
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	3e-09
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	4e-09
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	4e-09
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	1e-04
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	4e-09
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	9e-05
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	8e-09
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	7e-07
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-08
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	6e-05
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-08
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	7e-04
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	2e-08
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	2e-08
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	3e-08
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	3e-08
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	4e-08
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	9e-04
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	4e-08
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	4e-08
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	4e-08
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	6e-08
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	2e-04
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	8e-08
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	1e-07
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-07
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	1e-07
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	1e-07
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	4e-04
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-07
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-04
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-07
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	3e-07
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	4e-07
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	5e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-06
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	5e-07
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	8e-07
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	1e-06
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	2e-06
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	2e-06
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	2e-06
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	3e-06
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	3e-06
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	3e-05
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	7e-06
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	8e-06
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	1e-05
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-04
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	9e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-04
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	1e-04
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	2e-04
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	3e-04
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	4e-04
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	5e-04
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	6e-04

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  141 bits (356), Expect = 2e-40
 Identities = 76/113 (67%), Positives = 97/113 (85%), Gaps = 1/113 (0%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
           FTC+Y GNP+KT+SWMKDGK +  H+E V RI+SV+KEDKGMYQC +RN++ESA+AS EL
Sbjct: 363 FTCQYTGNPIKTVSWMKDGKAIG-HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 421

Query: 67  KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
           KLGGRFDPPVI+++F +ET+ PGP+ + KC+A GNPTPEISW LDGKK+ N +
Sbjct: 422 KLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANND 474

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 98.1 bits (244), Expect = 2e-25
 Identities = 30/124 (24%), Positives = 42/124 (33%), Gaps = 14/124 (11%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDSVRKEDKGMYQCVIRN 55
             C  +G PV    W K  +                      I     ED G Y CV+ N
Sbjct: 268 LLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 327

Query: 56  EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
                     L +     P   K     +T++ G    F C  +GNP   +SW  DGK +
Sbjct: 328 SVGGESVETVLTV---TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI 384

Query: 116 VNAE 119
            ++E
Sbjct: 385 GHSE 388

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 93.5 bits (232), Expect = 1e-23
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 18/124 (14%)

Query: 6   FFTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------------RIDSVRKEDKGMYQC 51
           F  C   GNP   ISW  DGK + +++                   I SV   D G+Y+C
Sbjct: 448 FLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKC 507

Query: 52  VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111
           + +++   A+ S +L +   +  P I++    + +  G      C  +G P   I W  D
Sbjct: 508 IAKSKVGVAEHSAKLNV---YGLPYIRQM-EKKAIVAGETLIVTCPVAGYPIDSIVWERD 563

Query: 112 GKKL 115
            + L
Sbjct: 564 NRAL 567

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 92.7 bits (230), Expect = 2e-23
 Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 14/120 (11%)

Query: 7   FTCKYEGNPV-KTISWMKDGKPVPDHNEPVF----------RIDSVRKEDKGMYQCVIRN 55
             C   G  +   I W  DG+ + +                 I++V     G + C  RN
Sbjct: 639 LHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARN 698

Query: 56  EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
                Q +  L +   + PP      +D+    G +   +C A G P P+++W       
Sbjct: 699 LAGHQQFTTPLNV---YVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDT 755

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 90.4 bits (224), Expect = 1e-22
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 11/118 (9%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP-DHNEPVF-----RIDSV-RKEDKGMYQCVIRNEQ-E 58
            TC   G P+ +I W +D + +P +  + VF      I++V R  D+  Y CV +N++  
Sbjct: 546 VTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGY 605

Query: 59  SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKL 115
           SA+ S E+++     P +I  +F +     G      C   G   P  I W LDG+ +
Sbjct: 606 SARGSLEVQVMVL--PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAI 661

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 76.5 bits (188), Expect = 9e-18
 Identities = 23/132 (17%), Positives = 36/132 (27%), Gaps = 23/132 (17%)

Query: 7   FTC---KYEGNPVKTISWMKDGKPVPDHNEPVFR-----------IDSVRKED-KGMYQC 51
             C    +  + V+ +SW  D +                      I  V  ED    YQC
Sbjct: 158 IKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQC 217

Query: 52  VIRNE---QESAQASGELKL-----GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT 103
             ++    +    A+    +            V    F  +T +        C A G P 
Sbjct: 218 RTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPV 277

Query: 104 PEISWYLDGKKL 115
           P   WY   +  
Sbjct: 278 PVFRWYKFIEGT 289

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 72.3 bits (177), Expect = 3e-16
 Identities = 17/81 (20%), Positives = 28/81 (34%)

Query: 37  RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 96
            + + R +   ++  V      S   +       +  P  +KE  +    +       +C
Sbjct: 2   NMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIEC 61

Query: 97  IASGNPTPEISWYLDGKKLVN 117
            ASGNP PEI W       V 
Sbjct: 62  KASGNPMPEIIWIRSDGTAVG 82

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 70.3 bits (172), Expect = 2e-15
 Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 19/127 (14%)

Query: 7   FTCKYEGNPVKTISWMK-DGKPVPDHNE-------------PVFRIDSVRKEDKGMYQCV 52
             CK  GNP+  I W++ DG  V D                P    D  ++    +Y C+
Sbjct: 59  IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 118

Query: 53  IRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA---SGNPTPEISWY 109
            RN+  S  +               +   + E +  G +   KC+      +    +SW+
Sbjct: 119 ARNQFGSIISRDVHVRAVV--AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWH 176

Query: 110 LDGKKLV 116
            D ++  
Sbjct: 177 TDEEENY 183

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 57.3 bits (138), Expect = 6e-11
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 12/72 (16%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF------------RIDSVRKEDKGMYQCVIR 54
             CK +G P   ++W K     P   + +              +D+++K ++G Y C   
Sbjct: 734 VECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAI 793

Query: 55  NEQESAQASGEL 66
           N   S  ++  +
Sbjct: 794 NGIGSGLSAVIM 805

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  118 bits (298), Expect = 4e-35
 Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 11/124 (8%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-----------IDSVRKEDKGMYQCVIRN 55
           F     G PV  +SW +DG+ +     P  +           I +V K + G Y     N
Sbjct: 25  FEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATN 84

Query: 56  EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
               A ++ EL +     PP   +     T+  G     +   +G PTP + +Y DG ++
Sbjct: 85  GSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEI 144

Query: 116 VNAE 119
            ++ 
Sbjct: 145 QSSL 148

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 64.0 bits (156), Expect = 5e-14
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 9/69 (13%)

Query: 7   FTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
              +  G P   + + +DG  +          + +     I     ED G Y     N  
Sbjct: 123 LQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSV 182

Query: 58  ESAQASGEL 66
             A ++ EL
Sbjct: 183 GRATSTAEL 191

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 47.4 bits (113), Expect = 7e-08
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
            P   +      +  G    F+   SG P PE+SW+ DG+ +  + 
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTST 50

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  113 bits (284), Expect = 4e-33
 Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 10/119 (8%)

Query: 7   FTCKYEGN--PVKTISWMKDGKPVP----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESA 60
             C    +   +    W K+G  +     + +   +RI+  R ED G Y CV  +   + 
Sbjct: 23  LQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVY-HFVSAP 81

Query: 61  QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
           +A+  +++      P I      E  N G +    C + G P PE  W      +    
Sbjct: 82  KANATIEV---KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEI 137

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 56.0 bits (135), Expect = 4e-11
 Identities = 19/76 (25%), Positives = 24/76 (31%), Gaps = 15/76 (19%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP--------------DHNEPVFRIDSVR-KEDKGMYQC 51
             CK  G P     W K    V                 N     I +++  ED G Y+C
Sbjct: 112 MYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYEC 171

Query: 52  VIRNEQESAQASGELK 67
              N   SA  S  L+
Sbjct: 172 NATNSIGSASVSTVLR 187

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 41.8 bits (98), Expect = 8e-06
 Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 2/45 (4%)

Query: 73  DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS--WYLDGKKL 115
           + P I  S      +       +C  + +    +   W  +G +L
Sbjct: 2   NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVEL 46

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  116 bits (291), Expect = 4e-33
 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEP--------VFRIDSVRKEDKGMYQCVIRNEQE 58
             C    +   TI W   G+ V    +           +I  ++K D+G Y+C  R    
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179

Query: 59  SAQASGELKLGGRFDP-PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
                 ++++     P    ++S  + T N G +    C A G P P +SW  DG+ + N
Sbjct: 180 GEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN 239

Query: 118 AE 119
            E
Sbjct: 240 EE 241

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 89.9 bits (223), Expect = 3e-23
 Identities = 26/128 (20%), Positives = 54/128 (42%), Gaps = 17/128 (13%)

Query: 6   FFTCKYEGNP-VKTISWMK-DGKPVPDHNEPV-----------FRIDSVRKEDKGMYQCV 52
           FF C+  G+   K ISW   +G+ +  + + +             I +   +D G+Y+CV
Sbjct: 21  FFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV 80

Query: 53  IRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111
           +  E    ++A+  +K+   F   + K + + +    G +    C    +  P I W   
Sbjct: 81  VTAEDGTQSEATVNVKI---FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHK 137

Query: 112 GKKLVNAE 119
           G+ ++  +
Sbjct: 138 GRDVILKK 145

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 58.3 bits (141), Expect = 2e-11
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 11/71 (15%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-----------IDSVRKEDKGMYQCVIRN 55
             C  +G P  T+SW KDG+P+ +  E   +           I +V K D+  Y C+  N
Sbjct: 216 LVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAEN 275

Query: 56  EQESAQASGEL 66
           +     AS  L
Sbjct: 276 KAGEQDASIHL 286

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  118 bits (298), Expect = 9e-33
 Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 9/118 (7%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
           F C+  G+    +SW KDG+ +           HN    +I    +   G Y C   N  
Sbjct: 121 FECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPL 180

Query: 58  ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
            +A +S +L L     PP          L  G +  FKC  +G    +I+W  D +++
Sbjct: 181 GTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREI 238

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  117 bits (294), Expect = 4e-32
 Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
             CK +G P   I+W K+   +           +N     I+ V   D G Y C   N  
Sbjct: 25  LQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSV 84

Query: 58  ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
            +  +S  L +  R  PP       D     G    F+C  +G+   ++SWY DG+ L +
Sbjct: 85  GAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKD 144

Query: 118 AE 119
             
Sbjct: 145 DA 146

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 99.1 bits (247), Expect = 9e-26
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 13/123 (10%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
           F C   G     I+W KD + +            N     +  V K D G Y C   N  
Sbjct: 217 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 276

Query: 58  ESAQASGELKLGGRFDPPVIKESFSD-ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
                S +L +    +PP   +       +    +  ++C   G+P  ++ WY D  ++ 
Sbjct: 277 GKDSCSAQLGV---QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ 333

Query: 117 NAE 119
            + 
Sbjct: 334 ESS 336

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 98.7 bits (246), Expect = 1e-25
 Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 12/120 (10%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKEDKGMYQCVIRNEQ 57
           + CK  G+P   + W KD   + + ++             + ++  ED G Y C   N  
Sbjct: 311 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 370

Query: 58  ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
            SA +S  LK+    +PPV ++         G + + +C   G P  ++SW+ D ++L +
Sbjct: 371 GSASSSTSLKV---KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS 427

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 97.2 bits (242), Expect = 6e-25
 Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 12/119 (10%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF---------RIDSVRKEDKGMYQCVIRNEQ 57
             C+ +G P   +SW KD + +    +             I +V   D G YQC   N+ 
Sbjct: 404 LECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 463

Query: 58  ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
            S    G + L     PP   +  SD +   G     +    G     ++W+ D  ++V
Sbjct: 464 GSDTCVGSITL---KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIV 519

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 59.8 bits (145), Expect = 7e-12
 Identities = 14/50 (28%), Positives = 19/50 (38%)

Query: 70  GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
           G  +PP   E         G     +C   G P   I+WY +  KL +A 
Sbjct: 1   GAMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAP 50

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 56.7 bits (137), Expect = 9e-11
 Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 10/70 (14%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR----------IDSVRKEDKGMYQCVIRNE 56
                EG    +++W KD   +   ++ ++                  + G Y C I+NE
Sbjct: 497 LQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNE 556

Query: 57  QESAQASGEL 66
             + +    L
Sbjct: 557 AGTQECFATL 566

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  113 bits (283), Expect = 2e-32
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 12/121 (9%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPD----------HNEPVFRIDSVRKEDKGMYQCVIRNE 56
           F C   GNP  +ISW+K+G+              H +    ++SV   D+G Y CV+ N+
Sbjct: 35  FRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENK 94

Query: 57  QESAQASGELKLGGRFD--PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114
             S + +  L +  R    P +     +++T   G +  F C    +  P I W    + 
Sbjct: 95  FGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEV 154

Query: 115 L 115
            
Sbjct: 155 N 155

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 24/96 (25%)

Query: 7   FTCKYEGNPVKTISWMK----DGKPVPDHNEPVF-----------------RIDSVRKED 45
           F CK   +    I W+K    +G  V     P                   R+ +V + D
Sbjct: 134 FHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERD 193

Query: 46  KGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESF 81
            G Y C   N    A+ +  L +     P   +E  
Sbjct: 194 GGEYLCRATNFIGVAEKAFWLSV---HGPRAAEEEL 226

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 71  RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
            +  P   +      +       F+C A+GNPTP ISW  +G++     
Sbjct: 13  YWTRPERMDK-KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH 60

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  112 bits (282), Expect = 1e-31
 Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 10/119 (8%)

Query: 7   FTCKYEGNPVKTISWMKDGKPV-PDHNEP--------VFRIDSVRKEDKGMYQCVIRNEQ 57
             C   GNP   I+W KD  PV P  +            +I+S  + D+G Y+CV  N  
Sbjct: 128 MLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSA 187

Query: 58  -ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
                +   L +  +   P          + PG N    C+A G+P P + W    + L
Sbjct: 188 GVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDL 246

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 98.0 bits (244), Expect = 3e-26
 Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 15/124 (12%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEP----------VFRIDSVR-KEDKGMYQCVIRN 55
           F C+  G+P   ++W K GK V                V RI  +R   D+ +Y+CV +N
Sbjct: 26  FVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQN 85

Query: 56  EQESAQASGEL----KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111
                    +L    +       P I      + +         C ASGNP PEI+W+ D
Sbjct: 86  SVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD 145

Query: 112 GKKL 115
              +
Sbjct: 146 FLPV 149

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 62.9 bits (153), Expect = 3e-13
 Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF---RIDSVRKEDKGMYQCVIRNEQESAQAS 63
            TC   G+P+  + WM+  + +   ++       ++    +D   Y CV  +     +A 
Sbjct: 225 ITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAV 284

Query: 64  GEL 66
            ++
Sbjct: 285 AQI 287

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 54.8 bits (132), Expect = 3e-10
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
           PP   +   D+    G    F C A+G+P P ++W   GKK+
Sbjct: 6   PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV 47

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  105 bits (264), Expect = 9e-30
 Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 12/121 (9%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEP----------VFRIDSVRKEDKGMYQCVIRNE 56
           F C   GNP+ T+ W+K+GK     +               ++SV   DKG Y CV+ NE
Sbjct: 39  FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 98

Query: 57  QESAQASGELKLGGR--FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114
             S   +  L +  R    P +     ++ +   G +  F C    +  P I W    +K
Sbjct: 99  YGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK 158

Query: 115 L 115
            
Sbjct: 159 N 159

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 54.1 bits (130), Expect = 3e-10
 Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 20/93 (21%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEP--------------------VFRIDSVRKEDK 46
           F CK   +    I W+K  +       P                    V  + +V + D 
Sbjct: 138 FVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADA 197

Query: 47  GMYQCVIRNEQESAQASGELKLGGRFDPPVIKE 79
           G Y C + N    A  S  L +  +   P  ++
Sbjct: 198 GEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 44.9 bits (106), Expect = 8e-07
 Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 4/50 (8%)

Query: 74  PPVIKESF----SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
            P    +         +       F+C A GNP P + W  +GK+     
Sbjct: 15  APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH 64

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  105 bits (263), Expect = 1e-29
 Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 13/122 (10%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRN---EQESAQAS 63
             C+  G+P     W K  K +P+ N      ++V  +D G Y C + N    + S  + 
Sbjct: 38  LCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQ 97

Query: 64  ----------GELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
                          G       I    + + L PG     +C+A G+P P   W+ +  
Sbjct: 98  LDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNEL 157

Query: 114 KL 115
            L
Sbjct: 158 PL 159

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 80.3 bits (198), Expect = 5e-20
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
             C   G+P+    W K+  P+    + ++ +  V  E +G Y C + N+++S  +    
Sbjct: 138 LQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 197

Query: 67  ---KLGGRFDPPVIKESFSDE 84
                      P  KE  +D+
Sbjct: 198 IIIDELNNLGHPDNKEQTTDQ 218

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 49.9 bits (119), Expect = 1e-08
 Identities = 8/42 (19%), Positives = 17/42 (40%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
              I  +   + +  G      C A+G+P  +  W+   K++
Sbjct: 18  GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEI 59

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  105 bits (262), Expect = 1e-28
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 12/115 (10%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEP----------VFRIDSVRKEDKGMYQCVIRNE 56
           F C   GNP  +ISW+K+G+     +               ++SV   D+G Y CV+ N+
Sbjct: 143 FRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENK 202

Query: 57  QESAQASGELKLGGRFD--PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY 109
             S + +  L +  R    P +     +++T   G +  F C    +  P I W 
Sbjct: 203 FGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 84.7 bits (209), Expect = 6e-21
 Identities = 28/137 (20%), Positives = 44/137 (32%), Gaps = 28/137 (20%)

Query: 7   FTCKYE-GNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRN----- 55
            +C    G P+    W+KDG  +             ++ +   ED G Y C  R      
Sbjct: 28  LSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVL 87

Query: 56  --------------EQESAQASGELKLGGRFDPPVIKESF---SDETLNPGPNYYFKCIA 98
                         + E  +   E        P   +          +       F+C A
Sbjct: 88  CHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPA 147

Query: 99  SGNPTPEISWYLDGKKL 115
           +GNPTP ISW  +G++ 
Sbjct: 148 AGNPTPSISWLKNGREF 164

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 50.4 bits (120), Expect = 1e-08
 Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 22/82 (26%)

Query: 7   FTCKYEGNPVKTISWMK----DGKPVPDHNEPVF------------------RIDSVRKE 44
           F CK   +    I W+K    +G  V     P                     + +V  E
Sbjct: 242 FHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFE 301

Query: 45  DKGMYQCVIRNEQESAQASGEL 66
           D G Y C+  N    +  S  L
Sbjct: 302 DAGEYTCLAGNSIGFSHHSAWL 323

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 11/47 (23%), Positives = 12/47 (25%), Gaps = 1/47 (2%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLVNAE 119
           P              G      C    G P     W  DG  LV +E
Sbjct: 8   PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSE 54

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  103 bits (259), Expect = 2e-27
 Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 9/116 (7%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPD-------HNEPVFRIDSVRKEDKGMYQCVIRNEQES 59
           FTC+ E     T  W  + + +P        +      + +V + D   Y+C  +N   S
Sbjct: 131 FTCEPETQDA-TYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNP-VS 188

Query: 60  AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
           A+ S  + L   + P     S  + +   G N    C A+ NP  + SW+++G   
Sbjct: 189 ARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQ 244

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  103 bits (259), Expect = 3e-27
 Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 9/119 (7%)

Query: 6   FFTCKYEGNPVKTISWMKDGKPVPD-------HNEPVFRIDSVRKEDKGMYQCVIRNEQE 58
             TC+ E     T  W  + + +P        ++     + SV + D G Y+C I+NE  
Sbjct: 308 ALTCEPEIQNT-TYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNEL- 365

Query: 59  SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
           S   S  + L   + P     S S     PG N    C A+ NP  + SW +DG    +
Sbjct: 366 SVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH 424

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 96.9 bits (241), Expect = 7e-25
 Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 4/114 (3%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
            +C    NP    SW  +G       E    I ++   + G Y C   N       +   
Sbjct: 223 LSCHAASNPPAQYSWFVNGTFQQSTQE--LFIPNITVNNSGSYTCQAHNSDTGLNRTTVT 280

Query: 67  KLGGRFDPPVIK-ESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
            +    +PP     S +   +         C      T    W+++ + L  + 
Sbjct: 281 TITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT-YLWWVNNQSLPVSP 333

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 93.5 bits (232), Expect = 1e-23
 Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 9/118 (7%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQCVIRNEQES 59
           FTC+ E     T  W  +G+ +P               + +V + D   Y C I+N   S
Sbjct: 487 FTCEPEAQN-TTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSV-S 544

Query: 60  AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
           A  S  + L   + P     S  D +   G N    C ++ NP+P+ SW ++G    +
Sbjct: 545 ANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQH 602

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 86.5 bits (214), Expect = 3e-21
 Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 4/110 (3%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
            +C    NP    SW+ DG       E    I ++ +++ G+Y C   N       +   
Sbjct: 401 LSCHAASNPPAQYSWLIDGNIQQHTQE--LFISNITEKNSGLYTCQANNSASGHSRTTVK 458

Query: 67  K-LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
                   P     S + + +       F C      T    W+++G+ L
Sbjct: 459 TITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSL 507

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 72.3 bits (177), Expect = 3e-16
 Identities = 15/139 (10%), Positives = 37/139 (26%), Gaps = 28/139 (20%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------------------------IDSV 41
                    +   SW K  +   +     +                          I ++
Sbjct: 19  LLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNI 78

Query: 42  RKEDKGMYQCVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG 100
            + D G Y   +      + +A+G+ ++     P     S + + +       F C    
Sbjct: 79  IQNDTGFYTLHVIKSDLVNEEATGQFRVYPEL-PKPSISSNNSKPVEDKDAVAFTCEPET 137

Query: 101 NPTPEISWYLDGKKLVNAE 119
                  W+++ + L  + 
Sbjct: 138 QD-ATYLWWVNNQSLPVSP 155

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 59.2 bits (143), Expect = 1e-11
 Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
            +C    NP    SW  +G P    +  V  I  +   + G Y C + N       S   
Sbjct: 579 LSCHSASNPSPQYSWRINGIPQ--QHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVK 636

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 98.6 bits (246), Expect = 2e-27
 Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 15/123 (12%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
            +C+  G P+  I W + GK +          D       + +  +ED+G+Y C+  NE 
Sbjct: 27  LSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEV 86

Query: 58  ESAQASGELKLGGRFDPPVIKESF---SDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114
              + S +L L      P     +          G       +  G P P ++W+   K 
Sbjct: 87  GEVETSSKLLL---QATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKL 143

Query: 115 LVN 117
           L N
Sbjct: 144 LQN 146

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 60.5 bits (147), Expect = 9e-13
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 10/71 (14%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSV-RKEDKGMYQCVIRNE 56
               Y G PV  ++W    K +            +     + +V RK   G Y+  + N 
Sbjct: 123 LHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNV 182

Query: 57  QESAQASGELK 67
             +  A  +++
Sbjct: 183 FGTVDAILDVE 193

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 55.9 bits (135), Expect = 6e-11
 Identities = 15/46 (32%), Positives = 21/46 (45%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
            P I++   D T   G      C   G P P+I WY  GK+L+ + 
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSR 52

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  100 bits (251), Expect = 3e-27
 Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 11/123 (8%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------IDSVRKEDKGMYQCVIRNEQE 58
             C+   +P   +SW+   + V   ++  F         I ++ K D+G+Y+C  R E  
Sbjct: 118 VVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR 177

Query: 59  SAQASGELKLGGRFDPPVIK--ESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
                 ++ +     PP I   +   + T   G    F C ASG+P P ISW+ +GK + 
Sbjct: 178 GEIDFRDIIVIVNV-PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE 236

Query: 117 NAE 119
             E
Sbjct: 237 ENE 239

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 97.6 bits (243), Expect = 4e-26
 Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 13/124 (10%)

Query: 6   FFTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRNE 56
           FFTC   G P     +   G+ +          +       I +   ED G+Y+C   + 
Sbjct: 23  FFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 82

Query: 57  QESAQ-ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
           +   Q A+  L++   +     +E  S +    G +    C  S +P P +SW    +++
Sbjct: 83  KGQTQEATVVLEI---YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEV 139

Query: 116 VNAE 119
               
Sbjct: 140 TTIS 143

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 64.1 bits (156), Expect = 1e-13
 Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQCVIRNEQES 59
           F+C+  G+P   ISW ++GK + ++ + +         + ++   D G Y C   N+   
Sbjct: 214 FSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGE 273

Query: 60  AQASGELKLGGRFDPPVIKE 79
            +    L++   F       
Sbjct: 274 DEKQAFLQV---FVQHHHHH 290

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
              +  S S   L+ G + +F C A G P     +   G+K+++ +
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQ 49

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 97.9 bits (244), Expect = 4e-27
 Identities = 27/124 (21%), Positives = 40/124 (32%), Gaps = 13/124 (10%)

Query: 7   FTCKYEGNPVKTISWMKDGKPV-----------PDHNEPVFRIDSVRKEDKGMYQCVIRN 55
             CK  G+P   + W + GK +                    I SV  +D  +YQ    N
Sbjct: 24  LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN 83

Query: 56  EQESAQASGEL--KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
           +  S   +  L  ++  +   P   E         G     K   SG P P I+W     
Sbjct: 84  QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQD 143

Query: 114 KLVN 117
            + N
Sbjct: 144 LIDN 147

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 60.5 bits (147), Expect = 1e-12
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 10/70 (14%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
               + G P   I+W K    +                +   + V ++D G Y    +N 
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183

Query: 57  QESAQASGEL 66
               Q + EL
Sbjct: 184 FGIDQKTVEL 193

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 50.5 bits (121), Expect = 7e-09
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
            P  KE   +  +    N    C  +G+P P + WY  GK+++   
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG 49

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 99.8 bits (249), Expect = 5e-27
 Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 13/119 (10%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKEDKGMYQCVIRNEQ 57
           F C   G     I+W KD + +                  +  V K D G Y C   N  
Sbjct: 25  FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 84

Query: 58  ESAQASGELKLGGRFDPPVIKESFSD-ETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
                S +L +    +PP   +       +    +  ++C   G+P  ++ WY D  ++
Sbjct: 85  GKDSCSAQLGV---QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEI 140

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 99.4 bits (248), Expect = 6e-27
 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 12/120 (10%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
           + CK  G+P   + W KD   +            +  V  + ++  ED G Y C   N  
Sbjct: 119 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 178

Query: 58  ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
            SA +S  LK+    +PPV ++         G + + +C   G P  ++SW+ D ++L +
Sbjct: 179 GSASSSTSLKV---KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS 235

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 65.9 bits (161), Expect = 3e-14
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 9/69 (13%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
             C+ +G P   +SW KD + +          ++      I +V   D G YQC   N+ 
Sbjct: 212 LECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 271

Query: 58  ESAQASGEL 66
            S    G +
Sbjct: 272 GSYTCVGSI 280

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 51.7 bits (124), Expect = 4e-09
 Identities = 12/50 (24%), Positives = 19/50 (38%)

Query: 70  GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
           G   PP          L  G +  FKC  +G    +I+W  D +++    
Sbjct: 1   GAMAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGG 50

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  101 bits (252), Expect = 9e-27
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 10/118 (8%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQCVIRNEQES 59
             C   G P  + +W++  + +   ++           I +V  +D G Y CV+  + E+
Sbjct: 241 LECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNEN 300

Query: 60  AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
             AS EL +     PP      S+       +  F+C  SG P P ++W  +G  ++ 
Sbjct: 301 ISASAELTV---LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIP 355

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 92.2 bits (229), Expect = 1e-23
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 13/122 (10%)

Query: 7   FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFR--------IDSVRKEDKGMYQCVIRNEQ 57
             C+  G+P+ TI W K+ + + P   +            I  ++  D G+Y+C  RN  
Sbjct: 141 LKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPA 200

Query: 58  -ESAQASGELKL---GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
                   E+++    G        +  S+     G +   +C  SG P P  +W    +
Sbjct: 201 STRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEE 260

Query: 114 KL 115
            +
Sbjct: 261 VI 262

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 86.8 bits (215), Expect = 1e-21
 Identities = 27/124 (21%), Positives = 38/124 (30%), Gaps = 15/124 (12%)

Query: 6   FFTCKYEGN-PVKTISWMKDGKPVPDHNEPVFR-------------IDSVRKEDKGMYQC 51
              C  E +  V  I W KDG  +    +   +                  K D+G+YQC
Sbjct: 40  LLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQC 99

Query: 52  VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111
                   +  S   K+     P          T   G     KC   G+P P I W  +
Sbjct: 100 EASLGDSGSIISRTAKVMVAG-PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKN 158

Query: 112 GKKL 115
            + L
Sbjct: 159 QQDL 162

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 67.9 bits (166), Expect = 1e-14
 Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPD------HNEPVFRIDSVRKEDKGMYQCVIRNEQESA 60
           F C   G PV T++WMK+G  V              RI  V K D+G YQCV  NE  +A
Sbjct: 332 FECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNA 391

Query: 61  QASGELK 67
           Q+S +L 
Sbjct: 392 QSSAQLI 398

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 57.2 bits (138), Expect = 6e-11
 Identities = 17/67 (25%), Positives = 19/67 (28%), Gaps = 2/67 (2%)

Query: 54  RNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISWYLDG 112
           R   E   +      GGR          SD     G N    C A  +   P I W  DG
Sbjct: 2   RWGSELESSHHHHHHGGR-RSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDG 60

Query: 113 KKLVNAE 119
             L    
Sbjct: 61  LILALGM 67

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 96.8 bits (241), Expect = 2e-26
 Identities = 35/124 (28%), Positives = 48/124 (38%), Gaps = 15/124 (12%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVR-KEDKGMYQCVIRN 55
           F C+  G+P   I W K GK V           D +  V RI  +R   D+ +Y+CV  N
Sbjct: 26  FICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASN 85

Query: 56  EQESAQASGELKLGGRFD----PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111
                  S  L +          P I      + +         C ASGNP PEI+W+ D
Sbjct: 86  NVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKD 145

Query: 112 GKKL 115
              +
Sbjct: 146 FLPV 149

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 57.1 bits (138), Expect = 2e-11
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 15/72 (20%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF------------RIDSVRKEDKGMYQCVIR 54
             C   GNP   I+W KD  PV   N                +I+   + D+G Y+CV  
Sbjct: 128 MLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVAT 187

Query: 55  N---EQESAQAS 63
           N    + SA A+
Sbjct: 188 NSAGTRYSAPAN 199

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 52.5 bits (126), Expect = 1e-09
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
           PP    +  D+T   G    F C A+G+P P+I W   GKK+
Sbjct: 6   PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKV 47

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 96.0 bits (239), Expect = 2e-26
 Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 12/118 (10%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNE--------PVFRIDSVRKEDKGMYQCVIRNE-Q 57
           F C  E  P   ISW ++   +   +          +  I SV   D G+Y C   N   
Sbjct: 27  FMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVG 86

Query: 58  ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
            + ++ G L++      P I     +  +  G      C   GNP P +SW      L
Sbjct: 87  GAVESCGALQV---KMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSAL 141

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 58.6 bits (142), Expect = 5e-12
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPD------HNEPVFRIDSVRKEDKGMYQCVIRNEQESA 60
             C   GNP  ++SW+K    + +            RI +V+KED G Y+CV +N   +A
Sbjct: 120 LPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA 179

Query: 61  QAS 63
            + 
Sbjct: 180 YSK 182

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 50.9 bits (122), Expect = 4e-09
 Identities = 11/46 (23%), Positives = 14/46 (30%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
            PVI                F C     P PEISW  +   +   +
Sbjct: 7   APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFD 52

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 99.5 bits (248), Expect = 3e-26
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 6/112 (5%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDH---NEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS 63
             C   GNPV  I W K           +EP+  I +V  ED+G Y+C   N +      
Sbjct: 227 LECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQ 286

Query: 64  GELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
           G + +      P   +  +D   + G +  + C+ASG P P + W  DG+ L
Sbjct: 287 GRIII---HAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPL 335

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 87.6 bits (217), Expect = 7e-22
 Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 19/128 (14%)

Query: 7   FTCK-YEGNPVKTISWMKDGKPVP-DHNEPVF--------RIDSVRKEDKGMYQCVIRNE 56
           FTC      P  +  W+ +  P     +   F         I      D G Y C   + 
Sbjct: 121 FTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSH 180

Query: 57  QESAQASGELKLG---------GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS 107
            +    S   K            ++ P +  +  +D     G     +C A GNP P+I 
Sbjct: 181 IDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIK 240

Query: 108 WYLDGKKL 115
           W       
Sbjct: 241 WRKLDGSQ 248

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 81.1 bits (200), Expect = 1e-19
 Identities = 27/122 (22%), Positives = 40/122 (32%), Gaps = 10/122 (8%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDS--------VRKEDKGMYQCVIRNEQE 58
            TC+   NP  T  W  +G  +    +  +R+ +        V+ +D G YQCV  N + 
Sbjct: 27  LTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARG 86

Query: 59  SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLVN 117
           +   S E  L   F      E      +  G    F C      P     W L+      
Sbjct: 87  TV-VSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFI 145

Query: 118 AE 119
             
Sbjct: 146 PA 147

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 76.1 bits (187), Expect = 1e-17
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61
           ++C   G P   + W++DG+P+        +    R   +  ED GMYQCV  N+  +  
Sbjct: 314 WSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVY 373

Query: 62  ASGELK 67
           AS EL 
Sbjct: 374 ASAELT 379

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 3/48 (6%)

Query: 71  RFDPPVIKESFSDETLNPGPNY---YFKCIASGNPTPEISWYLDGKKL 115
           R   PV +E  +      G         C A  NP     W ++G +L
Sbjct: 1   RSYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTEL 48

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 99.6 bits (248), Expect = 4e-26
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 9/119 (7%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP------DHNEPVFRIDSVRKEDKGMYQCVIRNEQESA 60
             C   G P   I+W K G  +P      ++     RI +V +ED G Y C+  N+  S 
Sbjct: 242 LECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSI 301

Query: 61  QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
           + +  +++      P   +   +  L PG +    C A+GNP P + W ++G+ L +A 
Sbjct: 302 RHTISVRV---KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAP 357

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 79.5 bits (196), Expect = 7e-19
 Identities = 31/128 (24%), Positives = 45/128 (35%), Gaps = 19/128 (14%)

Query: 7   FTCK-YEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKED-KGMYQCVIRNEQ 57
             C    G P   I WM         ++ V           +V  +D +  Y C  R   
Sbjct: 136 LQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHF 195

Query: 58  -ESAQASGELKL------GGRFDPPVI---KESFSDETLNPGPNYYFKCIASGNPTPEIS 107
             + Q      L      G     P     + + S + +  G +   +CIASG PTP+I+
Sbjct: 196 THTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIA 255

Query: 108 WYLDGKKL 115
           WY  G  L
Sbjct: 256 WYKKGGDL 263

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 78.4 bits (193), Expect = 2e-18
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 15/125 (12%)

Query: 6   FFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI-------------DSVRKEDKGMYQCV 52
              C+ +GNP  +  W ++ +      +P   +                 +E +G YQC 
Sbjct: 36  LIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCF 95

Query: 53  IRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC-IASGNPTPEISWYLD 111
            RN+  +A  S  ++L     P   KE+     +  G     +C    G P+P I W   
Sbjct: 96  ARNKFGTAL-SNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSS 154

Query: 112 GKKLV 116
             + +
Sbjct: 155 SMEPI 159

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 69.9 bits (171), Expect = 2e-15
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------IDSVRKEDKGMYQCVIRNEQE 58
             C+  GNP  T+ WM +G+P+        R            +   + +YQC   NE  
Sbjct: 332 LVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHG 391

Query: 59  SAQASGELK 67
              A+  + 
Sbjct: 392 YLLANAFVS 400

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 59.9 bits (145), Expect = 5e-12
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
           P + K+S  D  ++P  N   +C A GNP P   W  + +    A+
Sbjct: 17  PTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAK 62

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 98.4 bits (245), Expect = 7e-26
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 9/115 (7%)

Query: 7   FTCKYEGNPVKTISWMK-DGKPVPDHNEPVF-----RIDSVRKEDKGMYQCVIRNEQESA 60
             C   GNPV TI W + DGKP+              I + ++ED G Y+CV  N +   
Sbjct: 225 LECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKN 284

Query: 61  QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
            A G+L     +  P   +  +D  +    + +++C A+G P P   W  +G  L
Sbjct: 285 VAKGQLTF---YAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPL 336

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 86.4 bits (214), Expect = 2e-21
 Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 16/127 (12%)

Query: 7   FTCK-YEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQCVIRNEQE 58
             C     +   + +W+ +  P    N            I  V K D G Y CV+ N   
Sbjct: 122 LLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVT 181

Query: 59  SAQASGEL--------KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL 110
           + +  G           + G ++P +  +         G     +C A GNP P I W  
Sbjct: 182 NHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRR 241

Query: 111 DGKKLVN 117
              K + 
Sbjct: 242 ADGKPIA 248

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 81.4 bits (201), Expect = 1e-19
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 10/119 (8%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDS--------VRKEDKGMYQCVIRNEQE 58
            +C+ +GNP   I W  +G  V    +  + +           + +D G YQC+  N   
Sbjct: 28  LSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFG 87

Query: 59  SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLV 116
           +   S E KL   +       + S  ++  G      C     +     +W  +     
Sbjct: 88  TI-VSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSY 145

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 74.9 bits (184), Expect = 2e-17
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61
           + CK  G P  T  W+K+G P+         +    I  V   D GMYQCV  N+     
Sbjct: 315 WECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIF 374

Query: 62  ASGELK 67
           +S EL 
Sbjct: 375 SSAELS 380

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 3/49 (6%)

Query: 70  GRFDPPVIKESFSDET---LNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
           G    PV  +  S       +        C   GNP P I W L+G  +
Sbjct: 1   GPGSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDV 49

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 98.1 bits (244), Expect = 9e-26
 Identities = 29/122 (23%), Positives = 41/122 (33%), Gaps = 14/122 (11%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----------RIDSVRKEDKGMYQCVIRN 55
             C  +G P  +  W K  +        V             I     ED G Y CV+ N
Sbjct: 232 LLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 291

Query: 56  EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
                     L +     P   K     +T++ G    F C  +GNP   +SW  DGK +
Sbjct: 292 SVGGESVETVLTV---TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI 348

Query: 116 VN 117
            +
Sbjct: 349 GH 350

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 86.1 bits (213), Expect = 3e-21
 Identities = 42/63 (66%), Positives = 52/63 (82%), Gaps = 1/63 (1%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
           FTC+Y GNP+KT+SWMKDGK +      V RI+SV+KEDKGMYQC +RN++ESA+AS EL
Sbjct: 327 FTCQYTGNPIKTVSWMKDGKAIGHSES-VLRIESVKKEDKGMYQCFVRNDRESAEASAEL 385

Query: 67  KLG 69
           KLG
Sbjct: 386 KLG 388

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 68.8 bits (168), Expect = 4e-15
 Identities = 22/131 (16%), Positives = 31/131 (23%), Gaps = 22/131 (16%)

Query: 7   FTCK---YEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDSVRKED-KGMYQC 51
             C    +  + V+ +SW  D +                      I  V  ED    YQC
Sbjct: 123 IKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQC 182

Query: 52  VIRNEQ-ESAQASGELKL------GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP 104
             ++      + S                P           L         C A G P P
Sbjct: 183 RTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAP 242

Query: 105 EISWYLDGKKL 115
              WY   +  
Sbjct: 243 SFRWYKFIEGT 253

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 67.7 bits (165), Expect = 9e-15
 Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 19/127 (14%)

Query: 7   FTCKYEGNPVKTISWMK-DGKPVPDHNE-------------PVFRIDSVRKEDKGMYQCV 52
             CK  GNP+  I W++ DG  V D                P    D  ++    +Y C+
Sbjct: 24  IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 83

Query: 53  IRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA---SGNPTPEISWY 109
            RN+  S   S ++ +         +   + E +  G +   KC+      +    +SW+
Sbjct: 84  ARNQFGSI-ISRDVHVRAVV-AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWH 141

Query: 110 LDGKKLV 116
            D ++  
Sbjct: 142 TDEEENY 148

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 48.8 bits (116), Expect = 5e-08
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 74  PPVIKESFSDE-TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
            PV  +  ++    +       +C ASGNP PEI W       V 
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVG 47

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 93.8 bits (233), Expect = 2e-25
 Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 18/127 (14%)

Query: 7   FTCKYEGNPVK--TISWMKDGKPVP-DHNEPVF--------RIDSVRKEDKGMYQCVIRN 55
             C    +     +  W+ +  PV    ++  F         I +V   DKG Y C + +
Sbjct: 28  LLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSS 87

Query: 56  EQESAQASGEL-------KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 108
              +     +        +   +  P  I   F D     G N   +C A GNP P+I W
Sbjct: 88  PSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRW 147

Query: 109 YLDGKKL 115
               + +
Sbjct: 148 RKVLEPM 154

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 67.6 bits (165), Expect = 2e-15
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61
             C   GNPV  I W K  +P+P       +  V +I +++ ED+G+Y+C   N +   +
Sbjct: 133 LECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDK 192

Query: 62  ASGEL 66
               +
Sbjct: 193 HQARI 197

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 93.3 bits (232), Expect = 2e-25
 Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 16/122 (13%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDSVRKEDKGMYQCVIRN 55
             C  EG     I W+KDG  V + ++               + SV + D G Y C + +
Sbjct: 22  LNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED 81

Query: 56  EQESAQ-ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGK 113
             E+       L + G    P       D  + P   +   C A G P P  I W+    
Sbjct: 82  GGETEISQPVWLTVEG---VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTT 138

Query: 114 KL 115
           K+
Sbjct: 139 KI 140

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 54.8 bits (132), Expect = 1e-10
 Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 7   FTCKYEGNPV-KTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS 63
            +C+  G P   TI W +    +         ++        M+ C   N +  A + 
Sbjct: 118 LSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSR 175

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 48.6 bits (116), Expect = 2e-08
 Identities = 10/46 (21%), Positives = 17/46 (36%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
              +  +    T++ G      C   G   P+I W  DG  + N +
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLD 47

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 92.9 bits (231), Expect = 3e-25
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 15/125 (12%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------IDSVRKEDKGMYQCVIRNE-- 56
             C+   +P   +SW+   + V   ++  F         I ++ K D+G+Y+C  R E  
Sbjct: 22  VVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR 81

Query: 57  QESAQASGELKLGGRFDPPVIK--ESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114
            E       + +     PP I   +   + T   G    F C ASG+P P ISW+ +GK 
Sbjct: 82  GEIDFRDIIVIV---NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKL 138

Query: 115 LVNAE 119
           +   E
Sbjct: 139 IEENE 143

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 63.3 bits (154), Expect = 9e-14
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 7/68 (10%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQCVIRNEQES 59
           F+C+  G+P   ISW ++GK + ++ + +         + ++   D G Y C   N+   
Sbjct: 118 FSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGE 177

Query: 60  AQASGELK 67
            +    L+
Sbjct: 178 DEKQAFLQ 185

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 52.1 bits (125), Expect = 1e-09
 Identities = 9/45 (20%), Positives = 17/45 (37%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA 118
               +E  S +    G +    C  S +P P +SW    +++   
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTI 46

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 92.6 bits (230), Expect = 6e-25
 Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 27/143 (18%)

Query: 4   LKFFTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIR 54
           ++ ++          ++W  +G  +             +   +I+     DKG Y   + 
Sbjct: 20  IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELF 79

Query: 55  NEQESAQASGELK------------------LGGRFDPPVIKESFSDETLNPGPNYYFKC 96
           + +   Q + +L                   +  +    V+       T+  G      C
Sbjct: 80  DGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTC 139

Query: 97  IASGNPTPEISWYLDGKKLVNAE 119
              G+P PE+SW  + K L   +
Sbjct: 140 NVWGDPPPEVSWLKNEKALAQTD 162

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 61.0 bits (148), Expect = 7e-13
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 10/71 (14%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
            TC   G+P   +SW+K+ K +                 F I+ V   D G Y  V++N+
Sbjct: 137 LTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNK 196

Query: 57  QESAQASGELK 67
             S  +   + 
Sbjct: 197 YGSETSDFTVS 207

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 93.1 bits (231), Expect = 4e-24
 Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 27/141 (19%)

Query: 6   FFTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRNE 56
            ++          ++W  +G  +             +   +I+     DKG Y   + + 
Sbjct: 127 LYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDG 186

Query: 57  QESAQASGELK------------------LGGRFDPPVIKESFSDETLNPGPNYYFKCIA 98
           +   Q + +L                   +  +    V+       T+  G      C  
Sbjct: 187 KTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV 246

Query: 99  SGNPTPEISWYLDGKKLVNAE 119
            G+P PE+SW  + K L + +
Sbjct: 247 WGDPPPEVSWLKNEKALASDD 267

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 83.4 bits (206), Expect = 1e-20
 Identities = 17/131 (12%), Positives = 43/131 (32%), Gaps = 21/131 (16%)

Query: 7   FTCKYEGNPVKT-ISWMKDGKPVP-------DHNEPVFRIDSVRKEDKGMYQCVIRNEQE 58
             CK      +T I W KD + +                I    K+D G+Y+ ++++++ 
Sbjct: 26  LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG 85

Query: 59  SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG----------NPTPEISW 108
             ++  +L          +      +      +   +  A G              +++W
Sbjct: 86  KDKSRLKLVD---EAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNW 142

Query: 109 YLDGKKLVNAE 119
             +G  +  ++
Sbjct: 143 SHNGSAIRYSD 153

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 60.7 bits (147), Expect = 3e-12
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 10/71 (14%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
            TC   G+P   +SW+K+ K +                 F I+ V   D G Y  V++N+
Sbjct: 242 LTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNK 301

Query: 57  QESAQASGELK 67
             S  +   + 
Sbjct: 302 YGSETSDFTVS 312

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 93.2 bits (231), Expect = 1e-23
 Identities = 12/117 (10%), Positives = 30/117 (25%), Gaps = 12/117 (10%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP--------DHNEPVFRIDSVRKEDKGMYQCVIRNEQE 58
                +     +  W+     +         +       I  + +   G Y   I++E  
Sbjct: 68  LQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEAT 127

Query: 59  SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
           +      + +    +  +              +    CI+   P P + W L   + 
Sbjct: 128 NYTILFTVSI---RNTLLYTLRRPYFRKMENQD-ALVCISESVPEPIVEWVLCDSQG 180

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 81.7 bits (201), Expect = 2e-19
 Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 16/108 (14%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----RIDSVRKEDKGMYQCVIRNEQESAQ 61
           F+ +++  P    +W    K  P   + +            K   G Y     N+     
Sbjct: 346 FSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFT 405

Query: 62  ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY 109
               L +      P +    S    +        C + G P P  +W 
Sbjct: 406 KMFTLNI---RRKPQVLAEASASQAS--------CFSDGYPLPSWTWK 442

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 80.1 bits (197), Expect = 4e-19
 Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 24/127 (18%)

Query: 7   FTCK-YEGNPVKTISWMKDGKPVPDHNEPVFR---------------IDSVRKEDKGMYQ 50
             CK    N    ++W  + K + + N                    + SV + D G Y 
Sbjct: 247 IRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYT 306

Query: 51  CVIRNEQESAQASGELKLGGRFDPPVIK--ESFSDETLNPGPNYYFKCIASGNPTPEISW 108
           C           S  + +    +   I    S  D  ++    + F       P    +W
Sbjct: 307 CSSSKH---PSQSALVTI---VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTW 360

Query: 109 YLDGKKL 115
               K  
Sbjct: 361 TFSRKSF 367

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 78.2 bits (192), Expect = 2e-18
 Identities = 19/119 (15%), Positives = 33/119 (27%), Gaps = 10/119 (8%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDS-----VRKEDKGMYQCVIRNEQESAQ 61
             C  E  P   + W+          E    +       + +      +C  RNE     
Sbjct: 159 LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGREC 218

Query: 62  ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTPEISWYLDGKKLVNAE 119
            +    +     P     +     L  G   + +C A   N    ++W L+ K L    
Sbjct: 219 -TRLFTIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGN 273

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 52.0 bits (124), Expect = 4e-09
 Identities = 8/88 (9%), Positives = 24/88 (27%), Gaps = 13/88 (14%)

Query: 41  VRKEDKGMYQCVIRNEQES-------------AQASGELKLGGRFDPPVIKESFSDETLN 87
              +D  + +CV+ N + +             +++  +L    R          +   ++
Sbjct: 2   TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVD 61

Query: 88  PGPNYYFKCIASGNPTPEISWYLDGKKL 115
              +   + +          W      L
Sbjct: 62  VSASITLQVLVDAPGNISCLWVFKHSSL 89

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 47.4 bits (112), Expect = 1e-07
 Identities = 13/102 (12%), Positives = 31/102 (30%), Gaps = 22/102 (21%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------------------RIDSVRKEDK 46
            +C  +G P+ + +W K     P+  E +                      ++       
Sbjct: 427 ASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKG 486

Query: 47  GMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNP 88
            + +C   N   ++  +  L   G    P I++  +    + 
Sbjct: 487 FLVKCCAYNSLGTSCETILLNSPGP--FPFIQDGGTKHHHHH 526

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 93.3 bits (231), Expect = 1e-23
 Identities = 30/121 (24%), Positives = 41/121 (33%), Gaps = 9/121 (7%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPD----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
              KY G P   I W K+G P+          V  I  V + D G Y  ++ N     + 
Sbjct: 350 IPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQ 409

Query: 63  SGELKLGGRFDPPVIKESFSD---ETLNPGPNYYFKCIASGNPTPE-ISWYLDGKKLVNA 118
           S  + L     PP I E       ++   G      C     P P  I WY   ++    
Sbjct: 410 SHVVSLVVY-VPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECAN 468

Query: 119 E 119
           E
Sbjct: 469 E 469

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 87.5 bits (216), Expect = 1e-21
 Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 30/141 (21%)

Query: 7   FTCKYEGNPVKTISWMKDGKPV-----------------------------PDHNEPVFR 37
             C  + +  + ++W K G                                  ++  +  
Sbjct: 569 LWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIME 628

Query: 38  IDSVRKEDKGMYQCVIRNEQESAQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKC 96
           + +   +D+G Y C+ ++ +   +     +L       P I  +  ++T + G +    C
Sbjct: 629 LKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSC 688

Query: 97  IASGNPTPEISWYLDGKKLVN 117
            ASGNP P+I W+ D + LV 
Sbjct: 689 TASGNPPPQIMWFKDNETLVE 709

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 84.4 bits (208), Expect = 2e-20
 Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 19/128 (14%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------------------RIDSVRKEDKG 47
             C         I +  +       ++ +                     ID V + D+G
Sbjct: 244 LNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQG 303

Query: 48  MYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS 107
           +Y C   +   + + S  +++  +          S      G          G P PEI 
Sbjct: 304 LYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIK 363

Query: 108 WYLDGKKL 115
           WY +G  L
Sbjct: 364 WYKNGIPL 371

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 82.9 bits (204), Expect = 6e-20
 Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 9/116 (7%)

Query: 7   FTCKYEGNPV--------KTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQE 58
             C    + +            ++ DG  +   ++  F I S      GM  C  +   E
Sbjct: 148 IPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDE 207

Query: 59  SAQASGELKLGGRFD-PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
           S Q+   + +   +    V+        L+ G      C A       I +  +  
Sbjct: 208 SYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYP 263

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 63.6 bits (154), Expect = 3e-13
 Identities = 18/156 (11%), Positives = 32/156 (20%), Gaps = 47/156 (30%)

Query: 7   FTCKYEGNPV-KTISWMKDGKPVP------------------------------------ 29
            TC     P    I W    +                                       
Sbjct: 443 LTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKN 502

Query: 30  ------DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSD 83
                   N+ V  +         +Y+C   N+    +      +      P I     D
Sbjct: 503 QFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHV---TRGPEI-TLQPD 558

Query: 84  ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
                  +    C A  +    ++WY  G + +   
Sbjct: 559 MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIH 594

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 62.5 bits (151), Expect = 7e-13
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 7/78 (8%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQCVIRNEQES 59
            +C   GNP   I W KD + + + +  V         I  VRKED+G+Y C   +    
Sbjct: 686 VSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGC 745

Query: 60  AQASGELKLGGRFDPPVI 77
           A+      + G  +   +
Sbjct: 746 AKVEAFFIIEGAQEKTNL 763

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 58.6 bits (141), Expect = 2e-11
 Identities = 16/115 (13%), Positives = 25/115 (21%), Gaps = 14/115 (12%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNE----------PVFRIDSVRKEDKGMYQCVIRNE 56
            TC   G       W  +        E              I  V   D G Y+C  R  
Sbjct: 51  ITC--RGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRET 108

Query: 57  QESAQASGELKLGG--RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY 109
             ++     ++            +      T N        C+ S +        
Sbjct: 109 DLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCA 163

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 53.6 bits (128), Expect = 1e-09
 Identities = 11/78 (14%), Positives = 18/78 (23%), Gaps = 8/78 (10%)

Query: 38  IDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI 97
           + S       ++ CV          S  L      D P +       T+         C 
Sbjct: 1   MQSKVLLAVALWLCVETRAASVGLPSVSL------DLPRLSIQKDILTIKANTTLQITC- 53

Query: 98  ASGNPTPEISWYLDGKKL 115
             G    +  W  +    
Sbjct: 54  -RGQRDLDWLWPNNQSGS 70

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 88.7 bits (220), Expect = 2e-23
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 17/125 (13%)

Query: 6   FFTCKYEGNP-VKTISWMK-DGKPVPDHNEPV-----------FRIDSVRKEDKGMYQCV 52
           FF C+  G+   K ISW   +G+ +  + + +             I +   +D G+Y+CV
Sbjct: 21  FFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV 80

Query: 53  IRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111
           +  E    ++A+  +K+   F   + K + + +    G +    C    +  P I W   
Sbjct: 81  VTAEDGTQSEATVNVKI---FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHK 137

Query: 112 GKKLV 116
           G+ ++
Sbjct: 138 GRDVI 142

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 62.1 bits (151), Expect = 2e-13
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 8/70 (11%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------RIDSVRKEDKGMYQCVIRNEQE 58
             C    +   TI W   G+ V    +  F        +I  ++K D+G Y+C  R    
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179

Query: 59  SAQASGELKL 68
                 ++++
Sbjct: 180 GEINFKDIQV 189

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNP-TPEISWYLDGKKLVNA 118
              +    S   ++ G + +F C  +G+    +ISW+    + ++ 
Sbjct: 2   VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP 47

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 87.7 bits (217), Expect = 5e-23
 Identities = 25/127 (19%), Positives = 39/127 (30%), Gaps = 19/127 (14%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEP-----------------VFRIDSVRKEDKGMY 49
            +C Y G     + W  D                                SV +ED G Y
Sbjct: 24  LSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTY 83

Query: 50  QCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIAS-GNPTPEISW 108
            C++  E  ++    ++KL     PP         +   G      C    G+P  E +W
Sbjct: 84  TCMVSEEGGNSYGEVKVKLIVLV-PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTW 142

Query: 109 YLDGKKL 115
           + DG  +
Sbjct: 143 FKDGIVM 149

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 55.4 bits (133), Expect = 1e-10
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 17/78 (21%)

Query: 7   FTCK-YEGNPVKTISWMKDGKPVPDHNEPVF----------------RIDSVRKEDKGMY 49
            TC   +G+P    +W KDG  +P + +                     D +   D G Y
Sbjct: 127 LTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY 186

Query: 50  QCVIRNEQESAQASGELK 67
            C  RN   +   S  ++
Sbjct: 187 SCEARNGYGTPMTSNAVR 204

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 45.0 bits (106), Expect = 7e-07
 Identities = 7/44 (15%), Positives = 12/44 (27%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
              +  S  +  +         C  SG  +P + W  D      
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTR 47

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 87.5 bits (217), Expect = 6e-23
 Identities = 35/126 (27%), Positives = 48/126 (38%), Gaps = 17/126 (13%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDSVRK-EDKGMYQCVIR 54
           F C   G+P  +I W K+GK V                 + RI+ VR   D   Y+CV  
Sbjct: 26  FYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAE 85

Query: 55  NEQ-ESAQASGELKLGGRFD----PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY 109
           N   ++  A   L +          PVI +      +  G      C A GNPTP I W 
Sbjct: 86  NGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWI 145

Query: 110 LDGKKL 115
            +  K+
Sbjct: 146 KNQTKV 151

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 59.0 bits (143), Expect = 5e-12
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQCVIRNEQES 59
            TCK  GNP   I W+K+   V   + P +       +I++ R+ED+G Y+CV  N   +
Sbjct: 130 MTCKAIGNPTPNIYWIKNQTKVD-MSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGT 188

Query: 60  AQASG 64
             +  
Sbjct: 189 EHSKA 193

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 53.3 bits (128), Expect = 7e-10
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
           PP I     ++ +  G    F C A G+P P I W  +GKK+
Sbjct: 6   PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKV 47

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 88.7 bits (220), Expect = 1e-22
 Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 13/122 (10%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPV-----------FRIDSVRKEDKGMYQCVIRN 55
             CK  G+P   + W + GK +                    I SV  +D  +YQ    N
Sbjct: 24  LVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATN 83

Query: 56  EQESAQASGELKLGG--RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
           +  S   +  L++    +   P   E         G     K   SG P P I+W     
Sbjct: 84  QGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQD 143

Query: 114 KL 115
            +
Sbjct: 144 LI 145

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 60.2 bits (146), Expect = 3e-12
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 10/79 (12%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEP----------VFRIDSVRKEDKGMYQCVIRNE 56
               + G P   I+W K    + ++             +   + V ++D G Y    +N 
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183

Query: 57  QESAQASGELKLGGRFDPP 75
               Q + EL +    DPP
Sbjct: 184 FGIDQKTVELDVADVPDPP 202

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
            P  KE   +  +    N    C  +G+P P + WY  GK+++
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII 46

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 88.6 bits (219), Expect = 2e-22
 Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 13/120 (10%)

Query: 9   CKYEGNPVKTISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
            K E N +  + W KD KP+   N      +    + +V ++ +G Y C         Q 
Sbjct: 131 FKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQY 190

Query: 63  SG------ELKLGGRFDPPVIKESFSDE-TLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
                         +   PVI    ++   ++ G      C  +G  +    W  +G  +
Sbjct: 191 PITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVI 250

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 83.6 bits (206), Expect = 1e-20
 Identities = 29/128 (22%), Positives = 40/128 (31%), Gaps = 17/128 (13%)

Query: 5   KFFTCKYEGNPVK-TISWMKDGKPVPDHNEPVFR---------IDSVRKEDKGMYQCVIR 54
               C    N  K TI+W KD    P   E   R             + ED G Y CV+R
Sbjct: 23  DVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVR 82

Query: 55  NEQESAQASGELKLGGRF-DPPVIKESFSDETLNPGPNYYFKC------IASGNPTPEIS 107
           N     +     K      +     ++   + L    +    C          N  P++ 
Sbjct: 83  NSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQ 142

Query: 108 WYLDGKKL 115
           WY D K L
Sbjct: 143 WYKDCKPL 150

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 50.1 bits (119), Expect = 1e-08
 Identities = 11/84 (13%), Positives = 19/84 (22%), Gaps = 22/84 (26%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEP---------------------VFRIDSVRKED 45
             C   G       W  +G  + + +                       V  I  +    
Sbjct: 229 LICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF 288

Query: 46  -KGMYQCVIRNEQESAQASGELKL 68
            K  + C  +N      A  +L  
Sbjct: 289 YKHPFTCFAKNTHGIDAAYIQLIY 312

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 89.2 bits (221), Expect = 2e-22
 Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 16/122 (13%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----------RIDSVRKEDKGMYQCVIRN 55
             C Y  NP+   ++ K+GK V  + E                 +   ED+G+Y C + N
Sbjct: 232 IYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDN 291

Query: 56  EQESAQA-SGELKLGGRFDPPVIKESFSDE-TLNPGPNYYFKCIASGNPTPEISWYLDGK 113
                Q  S +L +      P  ++       +  G +    C  +G P P + W  + K
Sbjct: 292 GVGKPQKHSLKLTV---VSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAK 348

Query: 114 KL 115
            L
Sbjct: 349 PL 350

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 88.0 bits (218), Expect = 5e-22
 Identities = 25/134 (18%), Positives = 39/134 (29%), Gaps = 25/134 (18%)

Query: 7   FTCKY-EGNPVKTISWMKDGKPVPDHNEPVF-------------RIDSVRKEDK---GMY 49
             C      P   I+W K       + +                    V KED      Y
Sbjct: 120 LDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKY 179

Query: 50  QCVIRN---EQESAQASGELKL-----GGRFDPPVIKESFSDETLNPGPNYYFKCIASGN 101
            C  +N   ++E      E+K       G    PV +    D     G      C+   N
Sbjct: 180 VCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSN 239

Query: 102 PTPEISWYLDGKKL 115
           P    +++ +GK +
Sbjct: 240 PMGYPNYFKNGKDV 253

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 77.3 bits (190), Expect = 5e-18
 Identities = 22/120 (18%), Positives = 33/120 (27%), Gaps = 14/120 (11%)

Query: 7   FTCKYEGNPVKT-ISWMKDGKPVPDHNEPV--------FRIDSVRKEDKGMYQCVIRNEQ 57
             C  EGN      SW KDGK                       +  D+G YQC      
Sbjct: 26  LECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA 85

Query: 58  -ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC-IASGNPTPEISWYLDGKKL 115
             ++      +               ++T   G  +   C + +  P P I+W       
Sbjct: 86  GVASSRVISFRKTY---LIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGA 142

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 73.4 bits (180), Expect = 1e-16
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF----RIDSVRKEDKGMYQCVIRNEQESAQA 62
             CK  G P   + W  + KP+      V      I  V+  DKG Y C   NE      
Sbjct: 329 IPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYF 388

Query: 63  SGELK 67
              ++
Sbjct: 389 ETLVQ 393

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 51.4 bits (123), Expect = 5e-09
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKL 115
            PV+K+  ++           +CI  GN    + SW  DGK  
Sbjct: 6   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSY 48

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 89.3 bits (221), Expect = 2e-22
 Identities = 12/117 (10%), Positives = 30/117 (25%), Gaps = 12/117 (10%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP--------DHNEPVFRIDSVRKEDKGMYQCVIRNEQE 58
                +     +  W+     +         +       I  + +   G Y   I++E  
Sbjct: 68  LQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEAT 127

Query: 59  SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
           +      + +    +  +              +    CI+   P P + W L   + 
Sbjct: 128 NYTILFTVSI---RNTLLYTLRRPYFRKMENQD-ALVCISESVPEPIVEWVLCDSQG 180

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 85.9 bits (212), Expect = 3e-21
 Identities = 18/119 (15%), Positives = 31/119 (26%), Gaps = 10/119 (8%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDS-----VRKEDKGMYQCVIRNEQESAQ 61
             C  E  P   + W+          E    +       + +      +C  RNE     
Sbjct: 159 LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGREC 218

Query: 62  ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLVNAE 119
                           + +     L  G   + +C A   N    ++W L+ K L    
Sbjct: 219 TRLFT----IDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGN 273

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 77.0 bits (189), Expect = 5e-18
 Identities = 20/128 (15%), Positives = 35/128 (27%), Gaps = 24/128 (18%)

Query: 6   FFTCK-YEGNPVKTISWMKDGKPVPDHNEPVF---------------RIDSVRKEDKGMY 49
           +  CK    N    ++W  + K + + N                    + SV + D G Y
Sbjct: 246 WIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYY 305

Query: 50  QCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETL--NPGPNYYFKCIASGNPTPEIS 107
            C           S  + +    +   I  + S E    +    + F       P    +
Sbjct: 306 TCSSSKH---PSQSALVTI---VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCT 359

Query: 108 WYLDGKKL 115
           W    K  
Sbjct: 360 WTFSRKSF 367

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 59.7 bits (144), Expect = 6e-12
 Identities = 11/66 (16%), Positives = 17/66 (25%), Gaps = 5/66 (7%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61
           F+ +++  P    +W    K  P       N          K   G Y     N+     
Sbjct: 346 FSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFT 405

Query: 62  ASGELK 67
               L 
Sbjct: 406 KMFTLN 411

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 53.9 bits (129), Expect = 7e-10
 Identities = 6/79 (7%), Positives = 20/79 (25%), Gaps = 7/79 (8%)

Query: 37  RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 96
           + +         Y  V  + ++         L  +     + E+ +   ++   +   + 
Sbjct: 18  KNNDSSVGKSSSYPMVSESPEDLG-----CALRPQ-SSGTVYEA-AAVEVDVSASITLQV 70

Query: 97  IASGNPTPEISWYLDGKKL 115
           +          W      L
Sbjct: 71  LVDAPGNISCLWVFKHSSL 89

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 88.7 bits (220), Expect = 3e-22
 Identities = 24/125 (19%), Positives = 32/125 (25%), Gaps = 19/125 (15%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF----------------RIDSVRKEDKGMYQ 50
             C  EG P+  I+W +                              I  V+  D G Y 
Sbjct: 20  LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79

Query: 51  CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL 110
           C   +     Q S  L +      P    + +      G      C    NP   I W  
Sbjct: 80  CEAASRIGGHQKSMYLDIE---YAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRR 136

Query: 111 DGKKL 115
           D   L
Sbjct: 137 DKLVL 141

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 62.9 bits (153), Expect = 5e-13
 Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 11/80 (13%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-----------IDSVRKEDKGMYQCVIRN 55
            +C  + NP  +I W +D   +P  N    +           I      D G Y C   N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179

Query: 56  EQESAQASGELKLGGRFDPP 75
              +      L L      P
Sbjct: 180 HIGTRFQEYILALADVPSSP 199

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 75  PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
           P I +   +ET          C A G P PEI+W          E
Sbjct: 2   PHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTE 45

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 84.5 bits (209), Expect = 1e-21
 Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 17/128 (13%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------------IDSVRKEDKGMYQCVI 53
             CK EG P  TI W KDG+PV  + +   R             +   +++D G Y CV 
Sbjct: 29  LNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVA 88

Query: 54  RNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI-ASGNPTPEISWYLD 111
           +N   ++      L++         +    D  +  G     +C    G P P + W  D
Sbjct: 89  KNRVGQAVSRHASLQI--AVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKD 146

Query: 112 GKKLVNAE 119
           G  L + +
Sbjct: 147 GVPLDDLK 154

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 53.7 bits (129), Expect = 4e-10
 Identities = 15/52 (28%), Positives = 22/52 (42%)

Query: 68  LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
           L G++  P I E  +D  +         C   G P P I W+ DG+ +   E
Sbjct: 3   LAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNE 54

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 53.3 bits (128), Expect = 5e-10
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 15/72 (20%)

Query: 7   FTC-KYEGNPVKTISWMKDGKPVPDHNEPVF--------------RIDSVRKEDKGMYQC 51
             C   +G P  T+ W+KDG P+ D     F               I +V   D+G Y+C
Sbjct: 128 LECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKC 187

Query: 52  VIRNEQESAQAS 63
           + +N   + ++S
Sbjct: 188 IAQNLVGTRESS 199

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 85.9 bits (212), Expect = 2e-21
 Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 17/127 (13%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------RIDSVRKEDKGMYQCVIRNE-- 56
            +          I W KD   +   NE            +  V  ED G Y+CV+     
Sbjct: 145 LSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHE 204

Query: 57  --QESAQASGELKLGGRFD--PPVIKESFSDETLNPGPNYYFKC---IASGNPTPEISWY 109
             Q +   S EL++  + +   PVI       + + G      C   + +G P   + W+
Sbjct: 205 GQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWW 264

Query: 110 LDGKKLV 116
                 +
Sbjct: 265 TANDTHI 271

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 82.0 bits (202), Expect = 5e-20
 Identities = 21/123 (17%), Positives = 35/123 (28%), Gaps = 15/123 (12%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKEDKGMYQCVIRNEQ 57
           +      +P   ++W K+        E   R         +    +ED G Y C  RN  
Sbjct: 45  YWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNAS 104

Query: 58  ESAQASGELKLGGRFDPPVIKESFSDETLNPGPN-----YYFKCIASGNPTPEISWYLDG 112
              + S EL++        +      + L    +                  +I WY D 
Sbjct: 105 YCDKMSIELRVFEN-TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDS 163

Query: 113 KKL 115
             L
Sbjct: 164 LLL 166

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 17/87 (19%), Positives = 25/87 (28%), Gaps = 26/87 (29%)

Query: 7   FTCK---YEGNPVKTISWMKDGKPVPDHNEPVFR----------------------IDSV 41
             CK     G P+ T+ W        +   P  R                       D V
Sbjct: 246 IPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPV 305

Query: 42  RKEDKGM-YQCVIRNEQESAQASGELK 67
            +ED  M ++CV+ N          +K
Sbjct: 306 TREDLHMDFKCVVHNTLSFQTLRTTVK 332

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 37.4 bits (86), Expect = 4e-04
 Identities = 5/26 (19%), Positives = 11/26 (42%)

Query: 90  PNYYFKCIASGNPTPEISWYLDGKKL 115
           P   +   AS +P   ++W+ +    
Sbjct: 41  PQVPYWLWASVSPRINLTWHKNDSAR 66

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 79.8 bits (197), Expect = 4e-21
 Identities = 20/62 (32%), Positives = 29/62 (46%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
           TC+    P   I WMKDG P+P    PV  +  +  +D+G Y CV  +     Q S  +
Sbjct: 30 LTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAV 89

Query: 67 KL 68
           +
Sbjct: 90 SI 91

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 46.6 bits (111), Expect = 3e-08
 Identities = 10/44 (22%), Positives = 15/44 (34%)

Query: 72  FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
            +   +        + PG      C     P+P+I W  DG  L
Sbjct: 8   LEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPL 51

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 82.3 bits (203), Expect = 8e-21
 Identities = 26/131 (19%), Positives = 39/131 (29%), Gaps = 19/131 (14%)

Query: 7   FTCKYEGNPVKTISWMK-DGKPVPDHNE----------------PVFRIDSVRKEDKGMY 49
            TC Y G     + W    G                              SV ++D G Y
Sbjct: 21  LTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEY 80

Query: 50  QCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISW 108
            C++  E         + L     PP         ++  G      C    G+P  E SW
Sbjct: 81  TCMVSEEGGQNYGEVSIHLTVLV-PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSW 139

Query: 109 YLDGKKLVNAE 119
           + DG  ++ A+
Sbjct: 140 FKDGISMLTAD 150

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 55.4 bits (133), Expect = 1e-10
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 18/80 (22%)

Query: 7   FTCK-YEGNPVKTISWMKDGKPVPDHNEPVFR-----------------IDSVRKEDKGM 48
            TC  ++G+P    SW KDG  +   +    R                  D V   D G 
Sbjct: 124 LTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGE 183

Query: 49  YQCVIRNEQESAQASGELKL 68
           Y C  +N   +A  S    +
Sbjct: 184 YYCQAQNGYGTAMRSEAAHM 203

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 7/45 (15%), Positives = 13/45 (28%)

Query: 75  PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
             +  + SD  +    +    C  SG  +P + W           
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALV 46

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 81.1 bits (200), Expect = 1e-20
 Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 26/135 (19%)

Query: 7   FTCKYE--GNPVKTISWMKDGKPVPDHNEP------------------VFRIDSVRKEDK 46
             C+ +  G P   + W++DG+ +   +                      RI S++  D 
Sbjct: 22  LRCQLQVQGEPP-EVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDT 80

Query: 47  GMYQCVIRNEQESAQ-ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP- 104
           G YQC++    ++     G + L G    P   E   D T+     +   C A G P P 
Sbjct: 81  GQYQCLVFLGHQTFVSQPGYVGLEG---LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPV 137

Query: 105 EISWYLDGKKLVNAE 119
           ++ W  D   L  A 
Sbjct: 138 DLLWLQDAVPLATAP 152

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 53.0 bits (127), Expect = 8e-10
 Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 7   FTCKYEGNPV-KTISWMKDGKPVP--DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS 63
            +C+ +G P    + W++D  P+     + P   +          + C   N +    + 
Sbjct: 126 LSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSR 185

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 73  DPPVIKESFSDETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKLVNAE 119
           +      +  + T   G     +C        PE+ W  DG+ L  A+
Sbjct: 1   EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELAD 48

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 78.1 bits (193), Expect = 1e-20
 Identities = 13/57 (22%), Positives = 27/57 (47%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS 63
            C   G+P+    W K+  P+    + ++ +  V  E +G Y C + N+++S  + 
Sbjct: 23 LQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSK 79

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 50.4 bits (121), Expect = 1e-09
 Identities = 11/45 (24%), Positives = 19/45 (42%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA 118
              I    + + L PG     +C+A G+P P   W+ +   L + 
Sbjct: 3   KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE 47

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 84.3 bits (208), Expect = 2e-20
 Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 24/126 (19%)

Query: 7   FTCKYEGNPV-KTISWMKDGKPVPDHNEPVF--------------RIDSVRKEDKGMYQC 51
              +YE  P  +   W+   +   D  E                  +  ++  + G Y  
Sbjct: 333 LIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTF 392

Query: 52  VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD 111
           ++ N   +A  +  + +      P I       T +   N   +C+A+G P P I WY  
Sbjct: 393 LVSNSDVNAAIAFNVYV---NTKPEI------LTYDRLVNGMLQCVAAGFPEPTIDWYFC 443

Query: 112 GKKLVN 117
                 
Sbjct: 444 PGTEQR 449

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 81.6 bits (201), Expect = 2e-19
 Identities = 22/130 (16%), Positives = 36/130 (27%), Gaps = 22/130 (16%)

Query: 7   FTCKYEGNPVKT-ISWMKDGKPVPDHNEPVF--------------RIDSVRKEDKGMYQC 51
            TC  +        +W ++        +                  I S R  D G++ C
Sbjct: 231 VTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMC 290

Query: 52  VIRNEQESAQASGELKLGGRFDPPVIK---ESFSDETLNPGPNYYFKCIASGNPTPE-IS 107
              N   SA  +  L++    D   I       +   +N G N          P PE   
Sbjct: 291 YANNTFGSANVTTTLEV---VDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQ 347

Query: 108 WYLDGKKLVN 117
           W    +   +
Sbjct: 348 WIYMNRTFTD 357

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 72.8 bits (178), Expect = 2e-16
 Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 13/126 (10%)

Query: 6   FFTCKYEGNPVKTISWMK-DGKPVPD------HNEPVFRIDSVRK-EDKGMYQCVIRNEQ 57
              C      V   S     GKP+P         +    I SV++   +    C +  E 
Sbjct: 133 LVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEG 192

Query: 58  ESAQASGELKL---GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGK 113
           +S   S +  L         PV+  S +   L  G  +   C      +    +W  +  
Sbjct: 193 KS-VLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENS 251

Query: 114 KLVNAE 119
           +    E
Sbjct: 252 QTKLQE 257

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 64.7 bits (157), Expect = 1e-13
 Identities = 13/111 (11%), Positives = 30/111 (27%), Gaps = 11/111 (9%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHN-EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
             C   G     + W  +     + N +  +  +     + G Y C  ++   +      
Sbjct: 56  LLCTDPG----FVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSN-----S 106

Query: 66  LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
           + +  R DP  +             +   +C  +       S      K +
Sbjct: 107 IYVFVR-DPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPL 156

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 54.7 bits (131), Expect = 4e-10
 Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 11/80 (13%)

Query: 42  RKEDKGMYQCVI----RNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI 97
                  + CV+    R +  S+Q S      G   PP I    SD  +  G      C 
Sbjct: 3   GARGAWDFLCVLLLLLRVQTGSSQPSVSP---GEPSPPSIHPGKSDLIVRVGDEIRLLCT 59

Query: 98  ASGNPTPEISWYLDGKKLVN 117
             G     + W  +     N
Sbjct: 60  DPG----FVKWTFEILDETN 75

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 46.2 bits (109), Expect = 4e-07
 Identities = 14/93 (15%), Positives = 19/93 (20%), Gaps = 24/93 (25%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF---------------------RIDSVRKED 45
             C   G P  TI W          +  V                       IDS   + 
Sbjct: 426 LQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKH 485

Query: 46  KGMYQCVIRNEQESAQASGELKLGGRFDPPVIK 78
            G  +C   N+     A               +
Sbjct: 486 NGTVECKAYNDVGKTSAYFNFAF---KGNNKEQ 515

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 78.9 bits (194), Expect = 1e-19
 Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 11/108 (10%)

Query: 7   FTCKYEGNPVKTIS--WMKDGKPVPDHNEP--VFRIDSVRKEDKGMYQCVIRNEQESAQA 62
            TC    +  +     W+K G  + +   P           +  G Y CV   E     A
Sbjct: 18  LTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPE-PMGTA 76

Query: 63  SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNP-TPEISWY 109
           + +L       PP +K   S E +N G      C +   P   + +WY
Sbjct: 77  NIQLH-----GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWY 119

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 44.6 bits (105), Expect = 7e-07
 Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 17/78 (21%)

Query: 7   FTCKYEGNP-VKTISWMKDGKPV---------------PDHNEPVFRIDSV-RKEDKGMY 49
             CK E  P V   +W K                             I+++  + D G Y
Sbjct: 103 LVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY 162

Query: 50  QCVIRNEQESAQASGELK 67
           +C   + + S QA   L+
Sbjct: 163 RCNGTSSKGSDQAIITLR 180

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 77.9 bits (192), Expect = 4e-19
 Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 20/127 (15%)

Query: 7   FTCKYEGNPVKTISWMKDGKPV-PDHNEPVFR---------------IDSVRKEDKGMYQ 50
             CK EG P  TI W K G+ V  D ++P                       + D+G+Y 
Sbjct: 29  LNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV 88

Query: 51  CVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISW 108
           CV RN   E+      L++         +++ SD  +  G     +C    G+P P ISW
Sbjct: 89  CVARNYLGEAVSHDASLEVAIL--RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISW 146

Query: 109 YLDGKKL 115
             DG  L
Sbjct: 147 KKDGSPL 153

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 54.8 bits (132), Expect = 2e-10
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 7/64 (10%)

Query: 7   FTCK-YEGNPVKTISWMKDGKPVPDHNEPVF------RIDSVRKEDKGMYQCVIRNEQES 59
             C+   G+P  TISW KDG P+ D +E +        I   RK D G Y CV  N    
Sbjct: 131 MECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGE 190

Query: 60  AQAS 63
            ++ 
Sbjct: 191 RESE 194

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 53.3 bits (128), Expect = 6e-10
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
           PP I E  SD  ++ G      C A G PTP I WY  G+++   +
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDK 54

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 79.5 bits (195), Expect = 5e-19
 Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 18/127 (14%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----RIDSVRKEDKGMYQCVIRNEQESAQ 61
               +  +   TI+W      + + N  +              + G Y CV+   +    
Sbjct: 145 VDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRT 204

Query: 62  ----ASGELKLGGR--FDPPVIKESFSDETL---NPGPNYYFKCIA----SGNPTPEISW 108
                +  +K+ G      P +  S +D  +    PG      C        +   E+ W
Sbjct: 205 FHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWW 264

Query: 109 YLDGKKL 115
            +DGKK 
Sbjct: 265 TIDGKKP 271

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 66.0 bits (160), Expect = 4e-14
 Identities = 19/131 (14%), Positives = 35/131 (26%), Gaps = 20/131 (15%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------------IDSVRKEDKGMYQCV 52
           F      +   T+ W    +         FR                     D G Y C+
Sbjct: 38  FNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCM 97

Query: 53  IRNEQESAQASGELKLGGRFDPPVIKESF-SDETLNPGPNYYFKCI-----ASGNPTPEI 106
           +RN    ++ +  L++  +             +           C         +  P I
Sbjct: 98  LRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTI 157

Query: 107 SWYLDGKKLVN 117
           +WY+   K+ N
Sbjct: 158 TWYMGCYKIQN 168

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 24/86 (27%)

Query: 7   FTCK----YEGNPVKTISWMKDGKPVPDHNEPVF-------------------RIDSVRK 43
             C     +  +    + W  DGK   D    V                     I  V  
Sbjct: 246 IPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTS 305

Query: 44  EDKG-MYQCVIRNEQESAQASGELKL 68
           ED    Y C  R+ +     + ++K 
Sbjct: 306 EDLKRSYVCHARSAKGEVAKAAKVKQ 331

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 78.9 bits (194), Expect = 6e-19
 Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 20/132 (15%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNE- 56
           F C  +  P    SW KD                N+       +  +D G+Y C + +  
Sbjct: 23  FECD-KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTD 81

Query: 57  ---------QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS 107
                    +E  +    L    +F    +K   + E L  G   ++      +   +++
Sbjct: 82  GIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVN 141

Query: 108 WYLDGKKLVNAE 119
           +  + K++    
Sbjct: 142 YIFNEKEIFEGP 153

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 71.9 bits (176), Expect = 2e-16
 Identities = 21/139 (15%), Positives = 49/139 (35%), Gaps = 29/139 (20%)

Query: 5   KFFTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFR--IDSVRKEDKGMYQCVI 53
           +F+    + +    ++++ + K +          D N  +    ++ ++ ED+G Y   +
Sbjct: 126 RFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL 185

Query: 54  RNEQESAQASGEL----------------KLGGRFDPPVIKESFSDETLNPGPNYYFKCI 97
           ++ + +  ++  L                +   R   P   E  S E      N   KC 
Sbjct: 186 QDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEV-TGECNVLLKCK 244

Query: 98  ASGNPTP-EISWYLDGKKL 115
            +       I WY D +++
Sbjct: 245 VANIKKETHIVWYKDEREI 263

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 57.3 bits (138), Expect = 4e-11
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 7   FTCKYEGNPVKT-ISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQCVIRNEQE 58
             CK      +T I W KD + +    +  F        I    K+D G+Y+ ++++++ 
Sbjct: 241 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG 300

Query: 59  SAQASGEL 66
             ++  +L
Sbjct: 301 KDKSRLKL 308

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 78.0 bits (192), Expect = 7e-19
 Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 9/111 (8%)

Query: 7   FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
             C+    P   +  W  +G        P +RI S    D G Y+C       S     E
Sbjct: 21  LHCEVLHLPGSSSTQWFLNGTATQTST-PSYRITSASVNDSGEYRCQRGLSGRSDPIQLE 79

Query: 66  LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISWYLDGKKL 115
           +          +    S      G     +C A  +     + +Y +GK  
Sbjct: 80  IH------RGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAF 124

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 73.0 bits (179), Expect = 6e-17
 Identities = 21/116 (18%), Positives = 33/116 (28%), Gaps = 8/116 (6%)

Query: 7   FTCKYEGN-PVKTISWMKDGKPV-PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG 64
             C    +  V  + + ++GK     H      I        G Y C    +     A  
Sbjct: 102 LRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGI 161

Query: 65  ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEI-----SWYLDGKKL 115
            + +   F  PV+  S +   L  G      C               S+Y+  K L
Sbjct: 162 SVTVKELFPAPVLNASVTSPLL-EGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTL 216

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 7   FTCKYEGNPVK-----TISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQ-ES 59
            +C+ +    +       S+    K +   +    ++I + R+ED G+Y C    E    
Sbjct: 190 LSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNV 249

Query: 60  AQASGELKL 68
            + S EL+L
Sbjct: 250 LKRSPELEL 258

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 77.7 bits (191), Expect = 1e-18
 Identities = 23/123 (18%), Positives = 34/123 (27%), Gaps = 10/123 (8%)

Query: 7   FTCKYEGNPVK-TISWMKDGKPVPDHNEPV-------FRIDSVRKEDKGMYQCVIRNE-Q 57
             C      +K ++S M++G                 F I   +  D   Y C      +
Sbjct: 109 LPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGR 168

Query: 58  ESAQASGELKLGGRF-DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
           ES      LK+     +PP IK   S      G      C A+            G   +
Sbjct: 169 ESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKL 228

Query: 117 NAE 119
              
Sbjct: 229 EIP 231

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 70.0 bits (171), Expect = 9e-16
 Identities = 15/115 (13%), Positives = 33/115 (28%), Gaps = 11/115 (9%)

Query: 7   FTCKYEGNPVKTISWMKDGKPV----PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
             C   G    ++ W     P     P+         +   ++ G Y+C    +  +   
Sbjct: 24  LRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGST 79

Query: 63  SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTPEISWYLDGKKLV 116
           +  L +              + T+  G      C+ +       +S   +G + V
Sbjct: 80  TIHLYVKDP--AHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQV 132

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 55.0 bits (132), Expect = 3e-10
 Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 15/83 (18%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF------------RIDSVRKEDKGMYQCVIR 54
             C      V     +K G    +                   +++V  +D G+Y CV  
Sbjct: 206 IVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVAS 265

Query: 55  NEQESAQASGELKLGGRFDPPVI 77
           N+  +  A+   ++    +    
Sbjct: 266 NDVGTRTATMNFQV---VESHHH 285

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 40.7 bits (95), Expect = 3e-05
 Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 4/46 (8%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
            PVI+ S  +  + PG     +C+++G     + W          +
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLD 45

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 76.2 bits (187), Expect = 5e-18
 Identities = 19/120 (15%), Positives = 34/120 (28%), Gaps = 10/120 (8%)

Query: 7   FTCKYEGNPVK-TISWMK-DGKPVPDHNEPV------FRIDSVRKEDKGMYQCVIRNE-Q 57
             C      ++  +S ++  G+P+  H          F I   +      YQC      +
Sbjct: 109 LPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGR 168

Query: 58  ESAQASGELK-LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
           +    S  LK       PP +    ++     G      C AS        +       +
Sbjct: 169 KVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKL 228

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 66.9 bits (163), Expect = 1e-14
 Identities = 12/116 (10%), Positives = 32/116 (27%), Gaps = 11/116 (9%)

Query: 7   FTCKYEGNPVKTISWMKDGKP----VPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
             C   G    ++ W     P      D +  +   ++   ++ G Y+C    +     A
Sbjct: 24  LRCVGNG----SVEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSA 79

Query: 63  SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTPEISWYLDGKKLVN 117
           +  L +              +  +    +    C+ +       +S      + + 
Sbjct: 80  AIHLYVKDP--ARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLM 133

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 48.8 bits (116), Expect = 4e-08
 Identities = 12/73 (16%), Positives = 19/73 (26%), Gaps = 12/73 (16%)

Query: 7   FTCKYEGNPV-KTISWMKDGKPVPDHNEPVF-----------RIDSVRKEDKGMYQCVIR 54
             C      V   +    +   +    +  F            +D V  +  G Y CV  
Sbjct: 206 IVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVAS 265

Query: 55  NEQESAQASGELK 67
           N Q     S   +
Sbjct: 266 NVQGKHSTSMFFR 278

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 6/46 (13%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASG------NPTPEISWYLDGK 113
            PVI+ S  +  + PG     +C+ +G       P+P  + Y DG 
Sbjct: 4   IPVIEPSVPELVVKPGATVTLRCVGNGSVEWDGPPSPHWTLYSDGS 49

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 74.4 bits (182), Expect = 5e-18
 Identities = 21/122 (17%), Positives = 34/122 (27%), Gaps = 12/122 (9%)

Query: 7   FTCKYEGNPVKTISWMKD------GKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESA 60
            TC   G      SW         GK   +       ++ V   ++  Y C    E    
Sbjct: 21  LTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKL 80

Query: 61  QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN---PTPEISWYLDGKKLVN 117
           +   ++++      P I  S     L  G     KC  +        EI        + +
Sbjct: 81  EKGIQVEIYSFPKDPEIHLS---GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKS 137

Query: 118 AE 119
            E
Sbjct: 138 QE 139

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 37.1 bits (85), Expect = 5e-04
 Identities = 8/36 (22%), Positives = 12/36 (33%)

Query: 82  SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
           S      G +    C  +G  +P  SW       +N
Sbjct: 9   SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN 44

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 73.3 bits (180), Expect = 9e-18
 Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 9/111 (8%)

Query: 7   FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
            TC+   +P   +I W  +G  +P H +P          D G Y C       S      
Sbjct: 24  LTCQGARSPESDSIQWFHNGNLIPTHTQP-SYRFKANNNDSGEYTCQTGQTSLSDPVH-- 80

Query: 66  LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKL 115
             L   F+  V+           G     +C +  +    +++++ +GK  
Sbjct: 81  --LTVLFEWLVL--QTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQ 127

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 49.0 bits (117), Expect = 1e-08
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 7   FTCKYEGN-PVKTISWMKDGKPV-PDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
             C    + P+  +++ ++GK     H +P F I        G Y C      
Sbjct: 105 LRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGY 157

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 73.9 bits (181), Expect = 1e-17
 Identities = 11/109 (10%), Positives = 24/109 (22%), Gaps = 8/109 (7%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
               +   P +    +         N     + +      G Y C ++  +        L
Sbjct: 45  HDVIFIEWPFRGFFDIHR-----SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHL 99

Query: 67  KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
            +     P  +                  C  +  P P + W +     
Sbjct: 100 SVVK---PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVE 145

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 56.6 bits (136), Expect = 3e-11
 Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 13/69 (18%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI-------------DSVRKEDKGMYQCVI 53
            TC     P   + W+      P        +              S+ K       CV 
Sbjct: 124 VTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVG 183

Query: 54  RNEQESAQA 62
           +N++E A  
Sbjct: 184 KNDKEEAHG 192

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 75.5 bits (185), Expect = 1e-17
 Identities = 20/125 (16%), Positives = 36/125 (28%), Gaps = 14/125 (11%)

Query: 7   FTCK-YEGNPVKTISWMKDGKPVPDHNEP------------VFRIDSVRKEDKGMYQCVI 53
             C    G P   I+W  D   +P+ ++             ++ +    + D     C +
Sbjct: 137 ARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKV 196

Query: 54  RNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDG 112
            +E         + L   + P V    + +            C A  NP P   +W    
Sbjct: 197 EHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTM 256

Query: 113 KKLVN 117
             L  
Sbjct: 257 GPLPP 261

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 68.6 bits (167), Expect = 3e-15
 Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 37/146 (25%)

Query: 7   FTCKYEGNP-----VKTISWMKDGKPVP---------------------------DHNEP 34
             C  +        V  ++W + G+                              +    
Sbjct: 20  LPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNA 79

Query: 35  VFRIDSVRKEDKGMYQC-VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYY 93
             R+  +R ED+G Y C  +   Q S      L++      P          L   P   
Sbjct: 80  SLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV---LAKPQNTAEVQKVQLTGEPVPM 136

Query: 94  FKCIA-SGNPTPEISWYLDGKKLVNA 118
            +C++  G P  +I+W+ D   + N 
Sbjct: 137 ARCVSTGGRPPAQITWHSDLGGMPNT 162

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 54.3 bits (130), Expect = 4e-10
 Identities = 14/64 (21%), Positives = 19/64 (29%), Gaps = 4/64 (6%)

Query: 7   FTCKYEGNP-VKTISWMKDGKPVPDH---NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
            TC    NP     +W     P+P           I  V K       C + N   + QA
Sbjct: 237 LTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQA 296

Query: 63  SGEL 66
              +
Sbjct: 297 ELTV 300

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 73.5 bits (180), Expect = 1e-17
 Identities = 16/127 (12%), Positives = 34/127 (26%), Gaps = 22/127 (17%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF------------------RIDSVRKEDKGM 48
             C ++      +  ++      +++  +                    I SV+  D G 
Sbjct: 22  LECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQ 81

Query: 49  YQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW 108
           Y+C++            +K+   +     +                 C A G P  E+SW
Sbjct: 82  YRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPG----TGEVQLTCQARGYPLAEVSW 137

Query: 109 YLDGKKL 115
                  
Sbjct: 138 QNVSVPA 144

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 74.1 bits (181), Expect = 7e-17
 Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 6/113 (5%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE--QESAQASG 64
             C+       T++ +      P        + +  +++   + C    E   +    + 
Sbjct: 303 VKCEAHPRAKVTLNGVPAQPLGP---RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQ 359

Query: 65  ELKLGGRFDPPVIKESFS-DETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
             +L   + P + +     + T          C A GNP PE+    DG   +
Sbjct: 360 TRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL 412

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 56.0 bits (134), Expect = 1e-10
 Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 11/118 (9%)

Query: 7   FTCKYEGNPVKTISW----MKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
            TC    +    +       K    +P +N  V+ + +V+++      C        + A
Sbjct: 19  VTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQED--SQPMCYSNCPDGQSTA 76

Query: 63  SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC-IASGNPTP--EISWYLDGKKLVN 117
              L +   + P  ++ +        G N   +C +  G P     +      K+L  
Sbjct: 77  KTFLTV--YWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKR 132

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 54.5 bits (130), Expect = 5e-10
 Identities = 17/127 (13%), Positives = 31/127 (24%), Gaps = 18/127 (14%)

Query: 7   FTCKYEGN---PVKTISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCVIRNEQ 57
             C+ EG       T+  ++  K +          E    +   R      + C    + 
Sbjct: 106 LRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDL 165

Query: 58  ESA------QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN---PTPEISW 108
                      S   +L     P    +  S   L         C   G       ++  
Sbjct: 166 RPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHL 225

Query: 109 YLDGKKL 115
            L  ++L
Sbjct: 226 ALGDQRL 232

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 51.8 bits (123), Expect = 5e-09
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
             C+  GNP+  +  +KDG        P+    +V ++ +G Y C  R+ Q        +
Sbjct: 390 PMCQAWGNPLPELKCLKDGTFPL----PIGESVTVTRDLEGTYLCRARSTQGEVTREVTV 445

Query: 67  K 67
            
Sbjct: 446 N 446

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 48.3 bits (114), Expect = 7e-08
 Identities = 16/118 (13%), Positives = 34/118 (28%), Gaps = 14/118 (11%)

Query: 7   FTCKYEGN---PVKTISWMKDGKPVP------DHNEPVFRIDSVRKEDKGMYQ--CVIRN 55
             C  +G        +      + +       + +       SV  ED+G  +  C +  
Sbjct: 208 VVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVIL 267

Query: 56  EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
             +S +    + +     P VI    +   ++ G     KC A       ++      
Sbjct: 268 GNQSQETLQTVTIYSFPAPNVIL---TKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQP 322

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 73.7 bits (180), Expect = 7e-17
 Identities = 12/122 (9%), Positives = 36/122 (29%), Gaps = 14/122 (11%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
            T +       ++                  +  +  +D G + C +   Q+  +   ++
Sbjct: 116 LTLESPPGSSPSVQCRSPRGKNI-QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 174

Query: 67  KLGGRFDPPVIKE-------------SFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
            +        I               +F+ E L      +++   + +    I++ L  K
Sbjct: 175 VVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNK 234

Query: 114 KL 115
           ++
Sbjct: 235 EV 236

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 68.7 bits (167), Expect = 5e-15
 Identities = 18/137 (13%), Positives = 32/137 (23%), Gaps = 37/137 (27%)

Query: 7   FTCKYEGNPVKTISWMKDGKP--------------------------VPDHNEPVFRIDS 40
            TC           W    +                           + D       I +
Sbjct: 14  LTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKN 73

Query: 41  VRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG 100
           ++ ED   Y C + +++E  Q          F         SD  L  G +      +  
Sbjct: 74  LKIEDSDTYICEVEDQKEEVQL-------LVFGLTAN----SDTHLLQGQSLTLTLESPP 122

Query: 101 NPTPEISWYLDGKKLVN 117
             +P +       K + 
Sbjct: 123 GSSPSVQCRSPRGKNIQ 139

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 39.4 bits (91), Expect = 8e-05
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 8   TCKYEG--NPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQE 58
           TC+  G  +P   +S   + K          +   V   + GM+QC++ +  +
Sbjct: 302 TCEVWGPTSPKLMLSLKLENKEAKVSKR--EKAVWVLNPEAGMWQCLLSDSGQ 352

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 38.6 bits (89), Expect = 1e-04
 Identities = 14/128 (10%), Positives = 30/128 (23%), Gaps = 35/128 (27%)

Query: 7   FTCKYEGNP----VKTISWMKDGKPVP-DHNEPVFRID------------SVRKEDKGMY 49
              + E         T         V     +P  ++               +    G  
Sbjct: 213 LWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNL 272

Query: 50  QCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEI--S 107
              +  +         L         V++ +   + L         C   G  +P++  S
Sbjct: 273 TLALEAKTGKLHQEVNLV--------VMRATQLQKNLT--------CEVWGPTSPKLMLS 316

Query: 108 WYLDGKKL 115
             L+ K+ 
Sbjct: 317 LKLENKEA 324

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 73.6 bits (180), Expect = 7e-17
 Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 15/124 (12%)

Query: 7   FTCK-YEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDSVRKEDKGMYQCVIR 54
            TC    G P   +SW    K   ++ E             +R+   R+  +    C++ 
Sbjct: 155 ATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVN 214

Query: 55  NEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGK 113
              +  + S  L +  +++P V  E F         +    C A  NP   E  W     
Sbjct: 215 YHMDRFKESLTLNV--QYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNG 272

Query: 114 KLVN 117
            L  
Sbjct: 273 SLPK 276

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 57.8 bits (139), Expect = 3e-11
 Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 8/82 (9%)

Query: 7   FTCKYEGNP-VKTISWMKDGKPVPDH----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61
            TCK + NP      W      +P      N  +F    +     G Y C   N   +  
Sbjct: 252 LTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRS 311

Query: 62  ASGELKLGGRFDPPVIKESFSD 83
              E+ +    +   ++     
Sbjct: 312 GQVEVNI---TEAAALEHHHHH 330

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 53.2 bits (127), Expect = 1e-09
 Identities = 19/149 (12%), Positives = 35/149 (23%), Gaps = 37/149 (24%)

Query: 7   FTCKYEGNP----VKTISWMKDGKPVPD---------------------------HNEPV 35
             C +        +  ++W K                                    +  
Sbjct: 34  LHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGT 93

Query: 36  FRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSD----ETLNPGPN 91
            R+  +  ED+G+Y C         +   +L L     P    E        +       
Sbjct: 94  IRLSRLELEDEGVYICEFATFPTGNR-ESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKV 152

Query: 92  YYFKCIAS-GNPTPEISWYLDGKKLVNAE 119
               C ++ G P   +SW    K     +
Sbjct: 153 LVATCTSANGKPPSVVSWETRLKGEAEYQ 181

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 71.2 bits (174), Expect = 7e-17
 Identities = 18/137 (13%), Positives = 32/137 (23%), Gaps = 37/137 (27%)

Query: 7   FTCKYEGNPVKTISWMKDG--------------------------KPVPDHNEPVFRIDS 40
            TC           W                              + + D       I +
Sbjct: 15  LTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKN 74

Query: 41  VRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG 100
           ++ ED   Y C + +++E  Q          F         SD  L  G +      +  
Sbjct: 75  LKIEDSDTYICEVEDQKEEVQL-------LVFGLTAN----SDTHLLQGQSLTLTLESPP 123

Query: 101 NPTPEISWYLDGKKLVN 117
             +P +       K + 
Sbjct: 124 GSSPSVQCRSPRGKNIQ 140

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 58.5 bits (141), Expect = 6e-12
 Identities = 5/61 (8%), Positives = 17/61 (27%), Gaps = 1/61 (1%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
            T +       ++                  +  +  +D G + C +   Q+  +   ++
Sbjct: 117 LTLESPPGSSPSVQCRSPRGKNI-QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 175

Query: 67  K 67
            
Sbjct: 176 V 176

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 69.5 bits (170), Expect = 3e-16
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 7   FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
            TC       V +  W  +G    + N     I + + ED G Y+C  +   ES      
Sbjct: 24  LTCNGNNFFEVSSTKWFHNGSLSEETNS-SLNIVNAKFEDSGEYKCQHQQVNESE----P 78

Query: 66  LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISWYLDGKKL 115
           + L    D  ++    S E +  G   + +C    N    ++ +Y DG+ L
Sbjct: 79  VYLEVFSDWLLL--QASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEAL 127

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 49.5 bits (118), Expect = 1e-08
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 7   FTCKYEGN-PVKTISWMKDGKPVPDHNE-PVFRIDSVRKEDKGMYQCVIRNEQESAQASG 64
             C    N  V  + + KDG+ +    E     I +   ED G Y C  +  Q     S 
Sbjct: 105 LRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQ-LDYESE 163

Query: 65  ELKL 68
            L +
Sbjct: 164 PLNI 167

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 72.1 bits (176), Expect = 3e-16
 Identities = 16/119 (13%), Positives = 31/119 (26%), Gaps = 15/119 (12%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPV--------FRIDSVRKEDKGMYQCVIRNEQE 58
             C+ EG  ++   W+                        +     ++    C   N+  
Sbjct: 178 LRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVG 237

Query: 59  SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
            A+ S ++             S    T     ++       G P P + W  +G  L  
Sbjct: 238 RAEVSVQVN-------VSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNE 289

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 4e-07
 Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 19/85 (22%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEP----------------VFRIDSVRKEDKGMYQ 50
                +G P  ++ W+ +G  + + +                    R++     + G Y 
Sbjct: 266 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 325

Query: 51  CVIRNEQESAQASGELKLGGRFDPP 75
            +  N    A AS         D P
Sbjct: 326 LLAANPFGQASASIMAAF---MDNP 347

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 2e-06
 Identities = 7/45 (15%), Positives = 16/45 (35%)

Query: 73  DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
             P +K    + +++ G +   +C   G    +  W L   +   
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSA 201

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 67.9 bits (166), Expect = 3e-16
 Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 8/91 (8%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQCVIRNEQES 59
            +C   G+PV TI W KDG  V   +  +        +I   +  D G Y C+       
Sbjct: 28  LSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGE 87

Query: 60  AQASGELKLGGRFDPPVIKESFSDETLNPGP 90
           A  S  +++      PV     +D  L P  
Sbjct: 88  ATWSAYIEVQEF-GVPVQPPRPTDPNLIPSA 117

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 50.5 bits (121), Expect = 2e-09
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
           PPVI++   ++T+     +   C+A+G+P P I W  DG  +   +
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQD 53

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 67.5 bits (165), Expect = 4e-16
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 10/71 (14%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
          F C   GNP+ T+ W+K+GK              +      ++SV   DKG Y CV+ NE
Sbjct: 28 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 87

Query: 57 QESAQASGELK 67
            S   +  L 
Sbjct: 88 YGSINHTYHLD 98

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 44.4 bits (105), Expect = 2e-07
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 74  PPVIKESFSDE----TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
            P    +   E     +       F+C A GNP P + W  +GK+     
Sbjct: 4   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH 53

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 69.6 bits (170), Expect = 4e-16
 Identities = 16/140 (11%), Positives = 49/140 (35%), Gaps = 29/140 (20%)

Query: 4   LKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-----------IDSVRKEDKGMYQCV 52
           ++F+    + +    ++++ + K + +  +               ++ ++ ED+G Y   
Sbjct: 20  VRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQ 79

Query: 53  IRNEQESAQAS----------------GELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 96
           +++ + +  ++                 + +   R   P   E +    +    N   KC
Sbjct: 80  LQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE-YLSWEVTGECNVLLKC 138

Query: 97  IASGNPTP-EISWYLDGKKL 115
             +       I WY D +++
Sbjct: 139 KVANIKKETHIVWYKDEREI 158

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 55.3 bits (133), Expect = 1e-10
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 7   FTCKYEGNPVKT-ISWMKDGKPVPDHNEPVF-------RIDSVRKEDKGMYQCVIRNEQE 58
             CK      +T I W KD + +    +  F        I    K+D G+Y+ ++++++ 
Sbjct: 136 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG 195

Query: 59  SAQASGEL 66
             ++  +L
Sbjct: 196 KDKSRLKL 203

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 67.0 bits (164), Expect = 4e-16
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEPV-------FRIDSVRKEDKGMYQCVIRNEQES 59
            CK  G+P+  ISW+K+G   P  +           +I ++R  D G Y CV  +    
Sbjct: 28 LKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGE 87

Query: 60 AQASGEL 66
             S  L
Sbjct: 88 TSWSAVL 94

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 55.1 bits (133), Expect = 2e-11
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
           PP+I +  +++TL        KC A+G+P P ISW  +G    
Sbjct: 8   PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFP 50

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 66.2 bits (162), Expect = 1e-15
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 9/70 (12%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
           F+C  +G PV T++W++ G+ +             +  F I SV+  D+G Y  V+ N +
Sbjct: 34  FSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSE 93

Query: 58  ESAQASGELK 67
              +A   L 
Sbjct: 94  GKQEAEFTLT 103

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 48.1 bits (115), Expect = 1e-08
 Identities = 11/46 (23%), Positives = 17/46 (36%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
              I       T+  G +  F C   G P P ++W   G+ L  + 
Sbjct: 14  AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA 59

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 68.0 bits (166), Expect = 1e-15
 Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 9/112 (8%)

Query: 7   FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
             C+   +P   +  W  +   +       + ID+    D G Y+C       S      
Sbjct: 27  LKCQGAYSPEDNSTQWFHNESLISSQASS-YFIDAATVNDSGEYRCQTNLSTLSDPVQ-- 83

Query: 66  LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLV 116
             L       ++               + +C +       ++++  +GK   
Sbjct: 84  --LEVHIGWLLL--QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK 131

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 48.7 bits (116), Expect = 2e-08
 Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 7   FTCK-YEGNPVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG 64
             C  ++   +  ++++++GK     H+   F I     +D G Y C      ++  +S 
Sbjct: 108 LRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKN-VSSE 166

Query: 65  ELKL 68
            + +
Sbjct: 167 TVNI 170

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 66.2 bits (162), Expect = 1e-15
 Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 10/79 (12%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPD-------HNEP---VFRIDSVRKEDKGMYQCVIRNE 56
             CK  G P   +SW  DGKPV           E       I+ V   D G+Y C+  N 
Sbjct: 29  MDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNR 88

Query: 57  QESAQASGELKLGGRFDPP 75
                 S EL +  +   P
Sbjct: 89  AGQNSFSLELVVAAKESGP 107

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 52.0 bits (125), Expect = 4e-10
 Identities = 16/46 (34%), Positives = 22/46 (47%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
            P   ++  D T+  G      C  SG PTP++SW LDGK +    
Sbjct: 9   RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDS 54

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 68.2 bits (166), Expect = 5e-15
 Identities = 12/101 (11%), Positives = 24/101 (23%)

Query: 14  NPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFD 73
           +P   ++  +    V        +       +   Y C          +        +  
Sbjct: 121 DPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVS 180

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114
              +  +     +  G N    CI  GN      W    K+
Sbjct: 181 SINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKE 221

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 57.8 bits (139), Expect = 2e-11
 Identities = 12/118 (10%), Positives = 30/118 (25%), Gaps = 17/118 (14%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEP--------VFRIDSVRKEDKGMYQCVIRN--- 55
            TC         + W +  +  P             V  + ++   D G Y C   +   
Sbjct: 20  LTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRG 75

Query: 56  EQESAQASGELKLGGRFDPPVIKES-FSDETLNPGPNYYFKCIASGNPTPEISWYLDG 112
            +   +    + +       +  ++      L         C  +  P   ++ +   
Sbjct: 76  LETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKK 132

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 50.5 bits (120), Expect = 9e-09
 Identities = 17/76 (22%), Positives = 20/76 (26%), Gaps = 14/76 (18%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------------IDSVRKEDKGMYQCV 52
             C   GN V    W    K      EPV                I S   ED G Y C 
Sbjct: 201 LMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCN 260

Query: 53  IRNEQESAQASGELKL 68
           +       Q    + +
Sbjct: 261 VTESVNDHQDEKAINI 276

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 64.3 bits (157), Expect = 5e-15
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 10/71 (14%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
             K  G P   +SW  +G+ V           +        + VR  D G Y CV +N 
Sbjct: 25 MDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNR 84

Query: 57 QESAQASGELK 67
             A  + +L 
Sbjct: 85 AGEATFTVQLD 95

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 49.2 bits (118), Expect = 4e-09
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
           PP   +   + +++ G         SG P P++SWYL+G+ + + +
Sbjct: 5   PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDD 50

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 63.9 bits (156), Expect = 6e-15
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 6/67 (8%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVP------DHNEPVFRIDSVRKEDKGMYQCVIRNEQESA 60
            C   G PV  I+W+ +G+P+       +       I     ED G Y C+  N     
Sbjct: 31 LQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQV 90

Query: 61 QASGELK 67
            S  + 
Sbjct: 91 SCSAWVT 97

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 46.5 bits (111), Expect = 4e-08
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
            P       D  +  G ++  +C   G P P I+W L+G+ +
Sbjct: 11  APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI 52

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 64.3 bits (157), Expect = 7e-15
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
              K  G    T +WMK  K +            N     I + R+E  G Y  ++ N+ 
Sbjct: 27  LFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKL 86

Query: 58  ESAQASGELKLGGRFDPP 75
            S QA   L +  + DPP
Sbjct: 87  GSRQAQVNLTVVDKPDPP 104

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 42.7 bits (101), Expect = 1e-06
 Identities = 8/46 (17%), Positives = 17/46 (36%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
            P I +   D+ +  G +       +G      +W    K++  +E
Sbjct: 7   GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESE 52

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 66.8 bits (163), Expect = 7e-15
 Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 11/85 (12%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDSVRKEDKGMYQCVIRN 55
            TC+    P  TISW +DG+ +P  N                +    + D G Y C   N
Sbjct: 38  ITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVN 97

Query: 56  EQESAQASGELKLGGRFDPPVIKES 80
                     L        P I + 
Sbjct: 98  RIGQESLEFILVQADTPSSPSIDQV 122

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 11/69 (15%), Positives = 16/69 (23%), Gaps = 10/69 (14%)

Query: 47  GMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEI 106
             Y                         P ++          G      C     P+  I
Sbjct: 1   ATYAAASSALVPRGSHM---------YAPKLQGP-VAVYTWEGNQVNITCEVFAYPSATI 50

Query: 107 SWYLDGKKL 115
           SW+ DG+ L
Sbjct: 51  SWFRDGQLL 59

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 66.1 bits (161), Expect = 1e-14
 Identities = 15/111 (13%), Positives = 38/111 (34%), Gaps = 9/111 (8%)

Query: 7   FTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE 65
             C+   +P  ++  W  +   +       + ID+   +D G Y+C  +    S      
Sbjct: 27  LKCQGAYSPEDQSTQWFHNESLISSQASS-YFIDAATVDDSGEYRCQTQLSTLSD----P 81

Query: 66  LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKL 115
           ++L       ++               + +C +  N    ++++  +GK  
Sbjct: 82  VQLEVHIGWLLL--QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGR 130

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 50.3 bits (120), Expect = 7e-09
 Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 7   FTCKYEGN-PVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG 64
             C    N  +  ++++++GK     H+   F I     +D G Y C      ++  +S 
Sbjct: 108 LRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKN-VSSE 166

Query: 65  ELKL--GGRFDPPVIKESFS 82
            +++          I   F 
Sbjct: 167 TVQITITQGLAVSTISSFFP 186

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 67.0 bits (163), Expect = 1e-14
 Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 8/114 (7%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGM-YQCVIRNE--QESAQAS 63
             C  E +P        +G P          +     ED G  + C    E   +    +
Sbjct: 118 VKC--EAHP--RAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKN 173

Query: 64  GELKLGGRFDPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV 116
              +L   + P + +     + T          C A GNP PE+    DG   +
Sbjct: 174 QTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL 227

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 56.6 bits (136), Expect = 5e-11
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
             C+  GNP+  +  +KDG        P+    +V ++ +G Y C  R+ Q        +
Sbjct: 205 PMCQAWGNPLPELKCLKDGTFP----LPIGESVTVTRDLEGTYLCRARSTQGEVTREVTV 260

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 37.7 bits (87), Expect = 3e-04
 Identities = 11/117 (9%), Positives = 28/117 (23%), Gaps = 14/117 (11%)

Query: 7   FTCKYEGN---PVKTISWMKDGKPVP-------DHNEPVFRID-SVRKEDKGMYQCVIRN 55
             C  +G        +      + +        D       +  +   E      C +  
Sbjct: 23  VVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVIL 82

Query: 56  EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG 112
             +S +    + +   +  P      +   ++ G     KC A       ++     
Sbjct: 83  GNQSQETLQTVTI---YSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQ 136

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 63.1 bits (154), Expect = 2e-14
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 7/68 (10%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPD-------HNEPVFRIDSVRKEDKGMYQCVIRNEQES 59
           +C   GNP   I W KD + + +              I  VRKED+G+Y C   +    
Sbjct: 30 VSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGC 89

Query: 60 AQASGELK 67
          A+      
Sbjct: 90 AKVEAFFI 97

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 50.8 bits (122), Expect = 1e-09
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
            P I  +  ++T + G +    C ASGNP P+I W+ D + LV 
Sbjct: 10  APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE 53

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 66.8 bits (162), Expect = 2e-14
 Identities = 17/130 (13%), Positives = 30/130 (23%), Gaps = 17/130 (13%)

Query: 7   FTCKY-EGNPVKTISWMKDGKPVPDHNEPV------FRIDSVRKEDKGMYQCVIRNEQES 59
             C          I+W K+ + +               I +   ED G Y C +  +   
Sbjct: 148 LYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVR 207

Query: 60  AQASG------ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE----ISWY 109
            +          L +    D            +  G      C A           I W 
Sbjct: 208 IKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWE 267

Query: 110 LDGKKLVNAE 119
                ++  +
Sbjct: 268 NPSGWIIGLD 277

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 65.2 bits (158), Expect = 7e-14
 Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 10/114 (8%)

Query: 11  YEGNPVKTISWMKDGKPVPDHNEPVF----RIDSVRKEDKG-MYQCVIRNEQ-ESAQASG 64
              +    ++W K GK     N  V      I +    D    Y C +  +  +  Q   
Sbjct: 62  RYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIV 121

Query: 65  ELKLGGRFDPPVIKESFSDETLNPGPNYYFKC-IASGNPTPEISWYLDGKKLVN 117
              +     PP       +   +        C I        I+WY + ++L+ 
Sbjct: 122 RSHI---RKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELII 172

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 12/81 (14%), Positives = 21/81 (25%), Gaps = 19/81 (23%)

Query: 7   FTCKYEGNPVK----TISWMKDGKPVPDHNEPVF--------------RIDSVRKEDKGM 48
            TC      +      I W      +   +  V+                ++V +E  G 
Sbjct: 248 ITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGN 307

Query: 49  -YQCVIRNEQESAQASGELKL 68
            Y C   N       +  + L
Sbjct: 308 TYTCRGHNYYFDKTLTTTVVL 328

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 65.5 bits (159), Expect = 3e-14
 Identities = 20/121 (16%), Positives = 34/121 (28%), Gaps = 13/121 (10%)

Query: 7   FTCKYEGNPVKTISWMK-DGKPVPDH------NEPVFRIDSV-RKEDKGMYQCVIRNEQE 58
             C      V   S ++ DGK +P         +    I +V R   +   +C  + +  
Sbjct: 111 VRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGT 170

Query: 59  SAQASGELKL---GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKK 114
               S +  L         PV+    +   L  G  +   C      T     W     +
Sbjct: 171 W-LHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQ 229

Query: 115 L 115
            
Sbjct: 230 P 230

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 63.2 bits (153), Expect = 3e-13
 Identities = 17/112 (15%), Positives = 31/112 (27%), Gaps = 13/112 (11%)

Query: 7   FTCKYEGNPVKTISWMKDGKP--VPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG 64
            TC         + W        + ++ +  +  +       G Y C   N   S   S 
Sbjct: 32  LTCIDPD----FVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTS---SI 84

Query: 65  ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY-LDGKKL 115
            + +    DP  +             +   +C  +     + S    DGK L
Sbjct: 85  YVFV---RDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSL 133

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 44.3 bits (104), Expect = 1e-06
 Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 17/78 (21%)

Query: 7   FTCK-YEGNPVKTISWMKDGKPVPDHNEPVFR----------------IDSVRKEDKGMY 49
             C   + +      W+K         +                    I S R +D G++
Sbjct: 208 VVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVF 267

Query: 50  QCVIRNEQESAQASGELK 67
            C   N   SA  +  LK
Sbjct: 268 MCYANNTFGSANVTTTLK 285

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 4/50 (8%)

Query: 70  GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
           G   PP I  + S+  +  G      CI        + W          E
Sbjct: 8   GEPSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVE 53

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 64.1 bits (156), Expect = 4e-14
 Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 24/126 (19%)

Query: 8   TCKYEGNPVKTISWMKDGKP-----VPDHNEPVF-------------RIDSVRKEDKGMY 49
                 + +  I W K              E                +I  ++ +D+ +Y
Sbjct: 22  PSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIY 81

Query: 50  QCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY 109
           +  I + +          L  +    V K   S        N    C       PE++ Y
Sbjct: 82  KVSIYDTKGKNVLEKIFDL--KIQERVSKPKISWT----CINTTLTCEVMNGTDPELNLY 135

Query: 110 LDGKKL 115
            DGK L
Sbjct: 136 QDGKHL 141

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 50.7 bits (121), Expect = 5e-09
 Identities = 7/61 (11%), Positives = 17/61 (27%), Gaps = 2/61 (3%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
            TC+        ++  +DGK +                    ++C   N+     +   +
Sbjct: 120 LTCEVMNGTDPELNLYQDGKHLK--LSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPV 177

Query: 67  K 67
            
Sbjct: 178 S 178

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 63.8 bits (155), Expect = 4e-14
 Identities = 16/126 (12%), Positives = 37/126 (29%), Gaps = 26/126 (20%)

Query: 12  EGNPVKTISWMKDGKPV-----------PDHNEPVF-----RIDSVRKEDKGMYQCVIRN 55
             + +  + W +    V                 +      +I ++ ++D G Y   + +
Sbjct: 23  MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYS 82

Query: 56  E--QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
                    + +L++      P+I    S+ TL         C        E+  Y   +
Sbjct: 83  TNGTRILNKALDLRILEMVSKPMIYWECSNATLT--------CEVLEGTDVELKLYQGKE 134

Query: 114 KLVNAE 119
            L +  
Sbjct: 135 HLRSLR 140

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 44.6 bits (105), Expect = 7e-07
 Identities = 4/50 (8%), Positives = 13/50 (26%), Gaps = 2/50 (4%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE 56
            TC+        +   +  + +    +            +  ++C   N 
Sbjct: 115 LTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQW--TNLRAPFKCKAVNR 162

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 61.5 bits (150), Expect = 7e-14
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 9/69 (13%)

Query: 7  FTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
          F  K  G P  T  W KDGK +          D       I      D G+Y C ++N  
Sbjct: 26 FAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSA 85

Query: 58 ESAQASGEL 66
           S  +S +L
Sbjct: 86 GSVSSSCKL 94

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 48.1 bits (115), Expect = 1e-08
 Identities = 14/44 (31%), Positives = 18/44 (40%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
            PVI     D T++      F   A+G P P   W  DGK +  
Sbjct: 6   KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQ 49

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 63.8 bits (154), Expect = 8e-14
 Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 27/134 (20%)

Query: 6   FFTCKYEGNPVKTISWMKDGKPVP--DHNEPVFRIDSVRKEDKGMYQCVIRNE------- 56
             TC       K I+W KDGK +     ++  + + S  K+ +GMYQC            
Sbjct: 22  LLTC---DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQV 78

Query: 57  -------QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA--------SGN 101
                   ++ + + +     + D        ++E        Y   I+           
Sbjct: 79  YYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQY 138

Query: 102 PTPEISWYLDGKKL 115
           P  EI W  + K +
Sbjct: 139 PGSEILWQHNDKNI 152

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 43.7 bits (102), Expect = 2e-06
 Identities = 11/64 (17%), Positives = 16/64 (25%), Gaps = 11/64 (17%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKEDKGMYQCVIRNEQ 57
            TC     P   I W  + K +    +              +    E  G Y C  R  +
Sbjct: 133 LTC--PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSK 190

Query: 58  ESAQ 61
               
Sbjct: 191 PEDA 194

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 63.6 bits (154), Expect = 9e-14
 Identities = 20/148 (13%), Positives = 38/148 (25%), Gaps = 41/148 (27%)

Query: 7   FTCKYEGNPVKT----ISWMKDGKPVPDHNEPVF-------------------------- 36
             CK+  +P       I W+         ++ +                           
Sbjct: 20  LPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDV 79

Query: 37  -------RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPG 89
                   + +++  D G YQC ++     A     L +      P     F D +   G
Sbjct: 80  KSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV---KPSGTRCFVDGSEEIG 136

Query: 90  PNYYFKCIAS-GNPTPEISWYLDGKKLV 116
            ++  KC    G+   +  W        
Sbjct: 137 NDFKLKCEPKEGSLPLQFEWQKLSDSQT 164

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 55.5 bits (133), Expect = 1e-10
 Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 8/69 (11%)

Query: 7   FTCK-YEGNPVKTISWMKDGKPVP-------DHNEPVFRIDSVRKEDKGMYQCVIRNEQE 58
             C+  EG+      W K             +   PV  + +   E  G Y C ++N   
Sbjct: 141 LKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVG 200

Query: 59  SAQASGELK 67
           S Q    L 
Sbjct: 201 SDQCMLRLD 209

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 60.4 bits (147), Expect = 2e-13
 Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 11/80 (13%)

Query: 7   FTCKYEGNPVKTISWMKDGKPV---PDHNEPVF--------RIDSVRKEDKGMYQCVIRN 55
           FTC+  GNP   I W KDGK +    DH                +   +D G Y  +  N
Sbjct: 28  FTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAAN 87

Query: 56  EQESAQASGELKLGGRFDPP 75
            Q     +G L +      P
Sbjct: 88  PQGRISCTGRLMVQAVNSGP 107

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 45.0 bits (107), Expect = 2e-07
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
            P  +       +  G    F C  +GNP P+I W+ DGK++
Sbjct: 8   APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQI 49

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 63.3 bits (153), Expect = 3e-13
 Identities = 16/118 (13%), Positives = 34/118 (28%), Gaps = 13/118 (11%)

Query: 7   FTCKYEGNPVK----TISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
            T    G+       T +W KD +P  ++      +     E+ G Y+  +++       
Sbjct: 22  LTATVAGDEPLPSNLTYTWTKDDQPHENNTA-TLTVADATSENAGSYKVTVQDTDTMTSV 80

Query: 63  SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC---IASGNPTPEI-----SWYLDG 112
             E+ L    +  V         ++   +         + G    +      SW    
Sbjct: 81  ESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGE 138

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 51.0 bits (121), Expect = 6e-09
 Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 17/113 (15%)

Query: 13  GNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRF 72
            N     SW K    +         I     +  G+Y   +  E E + AS   K+    
Sbjct: 126 DNYELHYSWSKGEDVIDTT--QDITIQEFTADKNGVYTVKVWGESEDSAASASTKIML-- 181

Query: 73  DPPVI--KESFSDETLNPGPNYYFKCI--------ASGNPTPEI--SWYLDGK 113
              +   ++    +T+  G       +        +SG P   I  +WYL  +
Sbjct: 182 -ATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQRE 233

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 59.6 bits (145), Expect = 3e-13
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 10/71 (14%)

Query: 7  FTCKYEGNPVKTISWMKDGKPV----------PDHNEPVFRIDSVRKEDKGMYQCVIRNE 56
           + + +G P   +SW+++ +PV           +      RI +  + D G Y C   NE
Sbjct: 25 MSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNE 84

Query: 57 QESAQASGELK 67
            + Q    L+
Sbjct: 85 YGARQCEARLE 95

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 45.7 bits (109), Expect = 7e-08
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
           PP  K S  D+++  G +        G P P +SW  + + +
Sbjct: 5   PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPV 46

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 59.7 bits (145), Expect = 4e-13
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----RIDSVRKEDKGMYQCVIRNEQESAQ 61
            C+   +   +I+W++DG  + + N          +      D G+Y CV  +   S  
Sbjct: 23 LRCRLRDDVQ-SINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSDT 81

Query: 62 ASGEL 66
              +
Sbjct: 82 TYFSV 86

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 39.3 bits (92), Expect = 3e-05
 Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 1/47 (2%)

Query: 73  DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
                        ++PG     +C    +    I+W  DG +L  + 
Sbjct: 2   SSGSSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESN 47

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 59.3 bits (144), Expect = 5e-13
 Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 9/70 (12%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPD------HNEP---VFRIDSVRKEDKGMYQCVIRNEQ 57
              + G P  T +W                 +         S ++ D G Y+  ++NE 
Sbjct: 22 LEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL 81

Query: 58 ESAQASGELK 67
             +A  E+ 
Sbjct: 82 GEDEAIFEVI 91

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 43.5 bits (103), Expect = 6e-07
 Identities = 8/46 (17%), Positives = 14/46 (30%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
            P I  +     +  G  +  +    G P P  +W +       A 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAP 47

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 62.2 bits (150), Expect = 5e-13
 Identities = 24/156 (15%), Positives = 37/156 (23%), Gaps = 47/156 (30%)

Query: 7   FTCKY---EGNPVKTISWMKDGKP------------------------------------ 27
             C Y          ISW+K   P                                    
Sbjct: 22  LPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGR 81

Query: 28  --VPDHNEPVFRIDSVRKEDKGMYQCVIRNEQES-----AQASGELKLGGRFDP-PVIKE 79
             V +   P  R+  V  +D G Y C +              S  LK+ G      V   
Sbjct: 82  ASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVS 141

Query: 80  SFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
           +     ++ G +    C  +      ++WY      
Sbjct: 142 TAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFF 177

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 52.2 bits (124), Expect = 2e-09
 Identities = 9/90 (10%), Positives = 17/90 (18%), Gaps = 30/90 (33%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF------------------------------ 36
            TC         ++W        ++    +                              
Sbjct: 156 MTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNL 215

Query: 37  RIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
            I + +  D G   C +   Q    A    
Sbjct: 216 VIRAAKITDAGRVWCELATGQGELDADRSS 245

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 59.8 bits (145), Expect = 5e-13
 Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 16/89 (17%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP-------------DHNEPVFRIDSVRKEDKGMYQCVI 53
                 GNP  T+ W+ +G+P+              + +E     +     + G Y  + 
Sbjct: 25  IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA 84

Query: 54  RNEQESAQASGELKLGGRFDPPVIKESFS 82
           +N   +A  +           P   +  S
Sbjct: 85  KNPLGTANQTINGHF---LKEPFPVDEVS 110

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 43.7 bits (103), Expect = 8e-07
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
           PP +      E       +  + +  GNP P + W  +G+ L  ++
Sbjct: 8   PPRVVSLEEPE---LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESK 50

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 59.3 bits (144), Expect = 6e-13
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQE 58
               ++G P   + W K G P+            + VF +    + D G Y+  ++ E  
Sbjct: 44  LVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENM 103

Query: 59  SAQASGELK 67
              A+  ++
Sbjct: 104 KDTATIRIR 112

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 38.5 bits (90), Expect = 7e-05
 Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 3/61 (4%)

Query: 58  ESAQASGELKLGGRFDPPVI---KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114
            S   +  + +    +PP I   +          G          G P P++ W   G  
Sbjct: 5   SSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAP 64

Query: 115 L 115
           L
Sbjct: 65  L 65

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 59.9 bits (145), Expect = 9e-13
 Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 10/71 (14%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
           F CK EG P   + W KD  PV           +       I  V  +D   Y C   N 
Sbjct: 61  FDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNS 120

Query: 57  QESAQASGELK 67
              A  + EL 
Sbjct: 121 LGEATCTAELL 131

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 50.6 bits (121), Expect = 3e-09
 Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 1/79 (1%)

Query: 40  SVRKEDKGMYQCVIRNEQESAQASGELKLGGRFD-PPVIKESFSDETLNPGPNYYFKCIA 98
             +         +  N+ E+  A  E     +    P   ++  D  +  G    F C  
Sbjct: 6   GRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKV 65

Query: 99  SGNPTPEISWYLDGKKLVN 117
            G P PE+ W+ D   +  
Sbjct: 66  EGYPDPEVMWFKDDNPVKE 84

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 61.2 bits (147), Expect = 2e-12
 Identities = 18/116 (15%), Positives = 33/116 (28%), Gaps = 13/116 (11%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF------------RIDSVRKEDKGMYQCVIR 54
           F C+        +     GK  P     +              I  +RKED G Y C   
Sbjct: 251 FLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAH 310

Query: 55  NEQESAQASGELKLGGRFDPPVIK-ESFSDETLNPGPNYYFKCIASGNPTPEISWY 109
           ++ +  + S         +       S +      G +    C  +   +  I ++
Sbjct: 311 SDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYW 366

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 56.5 bits (135), Expect = 1e-10
 Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 6/97 (6%)

Query: 29  PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLN- 87
                    I+ +R  D G Y C   ++  S + + +L++       V ++     T + 
Sbjct: 180 TGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHC 239

Query: 88  -----PGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
                      F C  S     ++     GK+    E
Sbjct: 240 ALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFE 276

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 45.8 bits (107), Expect = 5e-07
 Identities = 18/131 (13%), Positives = 31/131 (23%), Gaps = 31/131 (23%)

Query: 7   FTCKYE---GNPVKTISWMKDGKPV-------------------------PDHNEPVFRI 38
            TC Y     N      W + G                            P++   V  I
Sbjct: 20  ITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNI 79

Query: 39  DSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA 98
             + ++D G Y+C +            L+       P +       T++ G      C  
Sbjct: 80  AQLSQDDSGRYKCGLGINSRGLSFDVSLE---VSQGPGLLNDTKVYTVDLGRTVTINCPF 136

Query: 99  SGNPTPEISWY 109
                 +    
Sbjct: 137 KTENAQKRKSL 147

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 16/138 (11%), Positives = 29/138 (21%), Gaps = 28/138 (20%)

Query: 7   FTCKYEGNPVKTIS-WMKDGKPVPDHNEPVFR---------------------------I 38
             C Y     K+I  W             +                             +
Sbjct: 351 VLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVIL 410

Query: 39  DSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA 98
           + +   D G Y C+   +           + G  +  V     +          +F C  
Sbjct: 411 NQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKF 470

Query: 99  SGNPTPEISWYLDGKKLV 116
           S        W   G + +
Sbjct: 471 SSYEKYWCKWNNTGCQAL 488

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 39.6 bits (91), Expect = 7e-05
 Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 16/71 (22%)

Query: 7   FTCKYEGNPVKTISWMKDGKPV--------------PDHNEPVF--RIDSVRKEDKGMYQ 50
           F CK+         W   G                  D N  +    ++ V + D+G Y 
Sbjct: 466 FPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYW 525

Query: 51  CVIRNEQESAQ 61
           C ++      +
Sbjct: 526 CGVKQGHFYGE 536

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 59.9 bits (144), Expect = 4e-12
 Identities = 26/148 (17%), Positives = 41/148 (27%), Gaps = 41/148 (27%)

Query: 7   FTCKY---EGNPVKTISWMK---------------DGKPVPD--------------HNEP 34
             C     E   V  + W+                    VP               HN+ 
Sbjct: 25  MGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDG 84

Query: 35  VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYF 94
              +  V+K D+G+Y C IR + ES      ++L       V+ E   D  +  G     
Sbjct: 85  SLLLQDVQKADEGIYTCEIRLKNESMVMKKPVEL------WVLPEEPRDLRVRVGDTTQM 138

Query: 95  KCIASGNPTPE---ISWYLDGKKLVNAE 119
           +C            ++W          E
Sbjct: 139 RCSIQSTEEKRVTKVNWMFSSGSHTEEE 166

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 40.2 bits (93), Expect = 4e-05
 Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 36/97 (37%)

Query: 7   FTCKYEGNP---VKTISWMKD----------------GKPVPDHNEPVFR---------- 37
             C  +      V  ++WM                   +     +   FR          
Sbjct: 138 MRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDIS 197

Query: 38  -------IDSVRKEDKGMYQCVIRNEQESAQASGELK 67
                  + +V++ D+G+Y C I   +  ++ +  L 
Sbjct: 198 RNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLH 234

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 57.4 bits (139), Expect = 4e-12
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 11/71 (15%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----------RIDSVRKEDKGMYQCVIRN 55
             C+    P   + W ++ + V  + + +             I  V K+D G Y     N
Sbjct: 35  LECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVN 94

Query: 56  EQESAQASGEL 66
           E      +  L
Sbjct: 95  EAGVTTCNTRL 105

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 43.9 bits (104), Expect = 5e-07
 Identities = 7/42 (16%), Positives = 17/42 (40%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
            P+       + +  G +   +C  S  P P++ W  + + +
Sbjct: 15  APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMV 56

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 56.7 bits (137), Expect = 5e-12
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 7  FTCK-YEGNPVKTISWMK-DGKPVPDHNEP---VFRIDSVRKEDKGMYQCVIRNEQESAQ 61
          F C     +P  T+ W +     +P        +  I +V+  D G Y C   N     Q
Sbjct: 30 FICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQ 89

Query: 62 ASGEL 66
           +  L
Sbjct: 90 GTATL 94

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 36.3 bits (84), Expect = 3e-04
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDG 112
             V  E    +++ PG +  F C A S +P   + W    
Sbjct: 10  IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLH 49

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 56.3 bits (136), Expect = 5e-12
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61
            C+   +   +I+W++DG  + + N          +      D G+Y CV  +   S  
Sbjct: 29 LRCRLRDDVQ-SINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSDT 87

Query: 62 ASGEL 66
              +
Sbjct: 88 TYFSV 92

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 42.9 bits (101), Expect = 9e-07
 Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
           P  +        ++PG     +C         I+W  DG +LV + 
Sbjct: 9   PWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESN 53

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 59.4 bits (143), Expect = 9e-12
 Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 1/109 (0%)

Query: 8   TCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67
             K    P+    W   G P    N     I +       +   VI +  +   A  E+K
Sbjct: 97  YVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVK 156

Query: 68  LGGRFDPPVIK-ESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
           + G             +  +N G    F+C A G        +L G  +
Sbjct: 157 VLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDV 205

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 58.1 bits (140), Expect = 1e-11
 Identities = 13/134 (9%), Positives = 33/134 (24%), Gaps = 27/134 (20%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPD--------------------HNEPVF-----RIDSV 41
                    +   +W K      D                      E ++         +
Sbjct: 19  LLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMI 78

Query: 42  RKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN 101
             +D G+Y   + +E         ++              ++ T+    +    C++  +
Sbjct: 79  TMKDMGVYTLDMTDENYRRT-QATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLS-ND 136

Query: 102 PTPEISWYLDGKKL 115
               I W  + + L
Sbjct: 137 IGANIQWLFNSQSL 150

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 51.6 bits (123), Expect = 3e-09
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 9/69 (13%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPD-------HNEPVFRIDSVRKEDKGMYQCVIRNEQES 59
            TC         I W+ + + +          N  + RID +++ED G YQC I N   S
Sbjct: 130 LTCLSNDIGA-NIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNP-VS 187

Query: 60  AQASGELKL 68
            + S  +KL
Sbjct: 188 VRRSNSIKL 196

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 55.7 bits (135), Expect = 1e-11
 Identities = 13/75 (17%), Positives = 20/75 (26%), Gaps = 10/75 (13%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
          F  +  G P     W K+G  +           + N     I  V  ED         N 
Sbjct: 25 FRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINI 84

Query: 57 QESAQASGELKLGGR 71
               +   L +  +
Sbjct: 85 AGETSSHAFLLVQAK 99

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 46.5 bits (111), Expect = 5e-08
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
            P I E    +T+  G + +F+    G P PE  WY +G K+  
Sbjct: 5   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIER 48

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 55.5 bits (134), Expect = 1e-11
 Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 17/85 (20%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------------IDSVRKEDKGMYQCV 52
                +GNP   + W  +G  + +      +              +D+    + G Y  +
Sbjct: 21  IPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLI 80

Query: 53  IRNEQESAQASGELKLGGRFDPPVI 77
            +NE    +             P I
Sbjct: 81  AKNEYGKDEKQISAHF---MGWPGI 102

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 42.8 bits (101), Expect = 1e-06
 Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 3/42 (7%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
            P I      E+     ++       GNP P + W+ +G  L
Sbjct: 4   APTITFL---ESPTSDHHWCIPFTVKGNPKPALQWFYNGAIL 42

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 54.6 bits (132), Expect = 4e-11
 Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 9/70 (12%)

Query: 7  FTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
          F    +  P   + W  +G  +                  I     +D G Y+ V  N +
Sbjct: 28 FILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYK 87

Query: 58 ESAQASGELK 67
            A     L 
Sbjct: 88 GEASDYATLD 97

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 46.5 bits (111), Expect = 4e-08
 Identities = 12/46 (26%), Positives = 17/46 (36%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
            P I        +  G N  F       PT E+ WY +G +L  + 
Sbjct: 8   APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESS 53

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 55.6 bits (133), Expect = 9e-11
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 3/105 (2%)

Query: 17  KTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPV 76
               ++ DG  +   ++  F I S      GM  C  +   ES Q+   + +   +    
Sbjct: 47  PEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYD 106

Query: 77  IKESFSDET-LNPGPNYYFKCIASGNPTP--EISWYLDGKKLVNA 118
           +  S S    L+ G      C A        + +W     K  + 
Sbjct: 107 VVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHK 151

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 39.4 bits (91), Expect = 6e-05
 Identities = 11/90 (12%), Positives = 23/90 (25%), Gaps = 22/90 (24%)

Query: 7   FTCKYEGNPVK--TISWMKDGKPVPDHNEP-----------------VFRIDSVRKEDKG 47
             C            +W                                 ID V + D+G
Sbjct: 125 LNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQG 184

Query: 48  MYQCVIRNEQESAQASGELKLGGRFDPPVI 77
           +Y C   +   + + S  +++    + P+ 
Sbjct: 185 LYTCAASSGLMTKKNSTFVRV---HEDPIE 211

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 54.3 bits (130), Expect = 1e-10
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 22/83 (26%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPD----------------------HNEPVFRIDSVRKE 44
             C+  G+PV  I W  +G+   D                      H      ID++ +E
Sbjct: 41  LHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEE 100

Query: 45  DKGMYQCVIRNEQESAQASGELK 67
           D G Y+C   N+ +    +   +
Sbjct: 101 DTGTYECRASNDPDRNHLTRAPR 123

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 49.6 bits (118), Expect = 6e-09
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
                ++   +    G +    C A G+P PEI W+ +G+   +  
Sbjct: 21  MAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDIC 66

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 52.7 bits (127), Expect = 2e-10
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 10/71 (14%)

Query: 7  FTCKYEGNPVKT-ISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
          + CK E     T ++W    + +          +    +  +  + K D G Y+C + N+
Sbjct: 21 YVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVND 80

Query: 57 QESAQASGELK 67
               +  EL 
Sbjct: 81 YGEDSSYAELF 91

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 75  PVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVNAE 119
            ++           G +  + C         +++WY   ++L N+E
Sbjct: 2   AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSE 47

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 52.1 bits (125), Expect = 5e-10
 Identities = 17/42 (40%), Positives = 22/42 (52%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
           PP I E  SD  ++ G      C A G PTP I WY  G+++
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERV 50

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 49.8 bits (119), Expect = 3e-09
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 16/66 (24%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVP-DHNEPVFRI---------------DSVRKEDKGMYQ 50
            CK EG P  TI W K G+ V  D ++P                       + D+G+Y 
Sbjct: 29 LNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV 88

Query: 51 CVIRNE 56
          CV RN 
Sbjct: 89 CVARNY 94

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 51.2 bits (123), Expect = 7e-10
 Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 11/66 (16%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKEDKGMYQCVIRNEQ 57
            C+   N      W K+G PV + +              I +   ED+G Y        
Sbjct: 27 LKCEISENI--PGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYN 84

Query: 58 ESAQAS 63
           +  A 
Sbjct: 85 VTLPAK 90

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
              I    +D+T+N G     KC  S N   +  W  +G  +  
Sbjct: 7   GLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQE 48

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 52.2 bits (125), Expect = 8e-10
 Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 30/130 (23%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-------------------RIDSVRKEDKG 47
           F       P+K + W K    V +     F                    I ++   D+ 
Sbjct: 15  FHVP-SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDED 73

Query: 48  MYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS 107
            Y+    N  ++ +    L +      P+I    S+ TL         C        E+ 
Sbjct: 74  EYEMESPNITDTMKFF--LYVLEMVSKPMIYWECSNATLT--------CEVLEGTDVELK 123

Query: 108 WYLDGKKLVN 117
            Y   + L +
Sbjct: 124 LYQGKEHLRS 133

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 51.2 bits (123), Expect = 9e-10
 Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 10/65 (15%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
          F C+      + + W  D  P+                V  +  +  +D G       ++
Sbjct: 33 FRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEAGDQ 92

Query: 57 QESAQ 61
          + SA 
Sbjct: 93 RASAA 97

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 46.6 bits (111), Expect = 5e-08
 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 60  AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
             +     + GR     I E   D  +  G +  F+C  S      + W+LD   L   E
Sbjct: 1   GSSGSSGLVQGR--RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANE 58

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 52.6 bits (126), Expect = 9e-10
 Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 20/118 (16%)

Query: 11  YEGNPVKTISWMKDGKPVPDHNEPVFR-----------IDSVRKEDKGMYQCVIRNEQES 59
                 K + +  +GK     +    R           I +V KED+G Y   + +E E 
Sbjct: 35  LHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETED 94

Query: 60  AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
            Q    +++      P+I    S+ TL         C        E+  Y   + L +
Sbjct: 95  -QWKITMEVYEMVSKPMIYWECSNATLT--------CEVLEGTDVELKLYQGKEHLRS 143

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 41.4 bits (97), Expect = 1e-05
 Identities = 4/49 (8%), Positives = 14/49 (28%), Gaps = 2/49 (4%)

Query: 8   TCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE 56
           TC+        +   +  + +    +    +       +  ++C   N 
Sbjct: 121 TCEVLEGTDVELKLYQGKEHLRSLRQKT--MSYQWTNLRAPFKCKAVNR 167

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 52.9 bits (126), Expect = 1e-09
 Identities = 20/118 (16%), Positives = 48/118 (40%), Gaps = 5/118 (4%)

Query: 3   ALKFFTCKYEGNPVKTISWMKDGKPVPDH--NEPVFRIDSVRKEDKGMYQC-VIRNEQES 59
             +  + + +G+ ++       G+  P    ++    +   +  D+  Y C V      +
Sbjct: 44  RPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGT 103

Query: 60  AQASGELKLGGRFDPPVIKESFSD-ETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKL 115
           A+A+  L +  + +   +  +      +         C +  GNP P+I+WY +G++L
Sbjct: 104 AEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRL 161

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 52.3 bits (125), Expect = 2e-09
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 37  RIDSVRKEDKGMYQCVIRN-EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFK 95
           +I  V+ +D G+Y+C+I     +  + + ++          I              +   
Sbjct: 83  QITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRI-----LVVDPVTSEHELT 137

Query: 96  CIASGNPTPEISWYLDGKKLVNA 118
           C A G P  E+ W     ++++ 
Sbjct: 138 CQAEGYPKAEVIWTSSDHQVLSG 160

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 43.1 bits (101), Expect = 4e-06
 Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 14/84 (16%)

Query: 7   FTCKYEGNPVKTISWMK-DGKPVPDHNEPV--------FRIDS---VRKEDKGMYQCVIR 54
            TC+ EG P   + W   D + +               F + S   +      ++ C  R
Sbjct: 136 LTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFR 195

Query: 55  NEQESAQASGELKLGG--RFDPPV 76
                   + EL +       PP 
Sbjct: 196 RLDPEENHTAELVIPELPLAHPPN 219

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 50.1 bits (120), Expect = 2e-09
 Identities = 19/65 (29%), Positives = 22/65 (33%), Gaps = 10/65 (15%)

Query: 7  FTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
          F C+     V T  W K+G  V                  ID VR ED+G Y  V     
Sbjct: 28 FKCEVSDEKV-TGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYA 86

Query: 58 ESAQA 62
           S  A
Sbjct: 87 LSLSA 91

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
              + +  +D T+       FKC  S        WY +G ++  ++
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSK 52

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 50.0 bits (120), Expect = 2e-09
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 14/68 (20%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-------------IDSVRKEDKGMYQCVI 53
             +        + WMK+G  +   +    R                V +ED+G YQ + 
Sbjct: 28 MAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVIT 86

Query: 54 RNEQESAQ 61
             Q  A+
Sbjct: 87 NGGQCEAE 94

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 36.2 bits (84), Expect = 4e-04
 Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 1/46 (2%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
           P +I     D+ +  G         S     ++ W  +G +L   +
Sbjct: 8   PVLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTRED 52

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 50.7 bits (121), Expect = 2e-09
 Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 19/87 (21%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHN----------------EPVFRIDSVRKEDKGMYQ 50
                +G P  ++ W+ +G  + + +                    R++     + G Y 
Sbjct: 20  IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79

Query: 51  CVIRNEQESAQASGELKLGGRFDPPVI 77
            +  N    A AS         D P  
Sbjct: 80  LLAANPFGQASASIMAAF---MDNPFE 103

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 9/45 (20%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIA---SGNPTPEISWYLDGKKL 115
            P   +      L+     +  CI     G P P + W  +G  L
Sbjct: 3   MPASVQ------LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVL 41

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 51.9 bits (124), Expect = 2e-09
 Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 34/139 (24%)

Query: 7   FTCKYEGNPVKT----ISWMKDGKPV------PDHNEPVF--------------RIDSVR 42
            +C +  +  +     I W K+ K V        +  P +               I ++R
Sbjct: 14  LSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALR 73

Query: 43  KEDKGMYQCVIRN-----EQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI 97
             D+G Y+CV+        +    A   L +   F  P I    SD  +         C 
Sbjct: 74  PSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSI----SDFEIPTSNIRRIICS 129

Query: 98  ASG-NPTPEISWYLDGKKL 115
            SG  P P +SW  +G++L
Sbjct: 130 TSGGFPEPHLSWLENGEEL 148

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 51.6 bits (123), Expect = 3e-09
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 37  RIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKC 96
           RI +V   D G Y C  ++     +A  ELK+        +     D         + +C
Sbjct: 86  RIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHV-----DVKGYKDGGIHLEC 140

Query: 97  IASGN-PTPEISWYLDGKKLVNAE 119
            ++G  P P+I W  +  + +   
Sbjct: 141 RSTGWYPQPQIQWSNNKGENIPTV 164

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 49.2 bits (118), Expect = 4e-09
 Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 10/64 (15%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
            C+        + W+KD K +          +    +  I     +D G Y C +   +
Sbjct: 28 LRCELSRAGT-PVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEASK 86

Query: 58 ESAQ 61
           +A 
Sbjct: 87 STAS 90

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
           P  I +   D+ + PG +   +C  S   TP + W  D K +  ++
Sbjct: 8   PAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQ 52

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 49.3 bits (118), Expect = 4e-09
 Identities = 10/65 (15%), Positives = 15/65 (23%), Gaps = 10/65 (15%)

Query: 7  FTCK-YEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
          F C     +      W   GK V             + +  +      D G     +R  
Sbjct: 28 FECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGL 87

Query: 57 QESAQ 61
             A 
Sbjct: 88 TSKAS 92

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 37.8 bits (88), Expect = 9e-05
 Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 74  PPVIKESFSDETLNPGPNYYFKC-IASGNPTPEISWYLDGKKLVNAE 119
              I +      +  G +  F+C ++  + +    W + GK + ++ 
Sbjct: 8   HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSS 54

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 49.9 bits (118), Expect = 8e-09
 Identities = 19/132 (14%), Positives = 37/132 (28%), Gaps = 28/132 (21%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSV-RKEDKGMYQCVIRNEQES------ 59
            TC  + +    + W K+G+ +P  ++    +      ED G Y C      ++      
Sbjct: 19  LTCPLDSDE--NLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLK 76

Query: 60  -------------AQASGELKLGGRFDPPVIKE---SFSDETLNPGPNYYFKCIASGNPT 103
                        A+     K   + D     +       +      +    C  +    
Sbjct: 77  ARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDKT- 135

Query: 104 PEISWYLDGKKL 115
             I W  DG  +
Sbjct: 136 --IKWLKDGSII 145

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 44.9 bits (105), Expect = 7e-07
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 6   FFTCKYEGNPVKTISWMKDGKPV--PDHNEPVFRIDSVRKEDKGMYQCVIRNEQES 59
             TC         I W+KDG  +   +  +  + + +  K+ +G YQC    E  +
Sbjct: 126 LLTCGLTDKT---IKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGAKETSN 178

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 48.1 bits (115), Expect = 2e-08
 Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 11/64 (17%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
             C+        + W K  + +          D      +I  +  ED G Y C+   E+
Sbjct: 39  LRCELSKMA--PVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKER 96

Query: 58  ESAQ 61
            SA 
Sbjct: 97  TSAM 100

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 38.5 bits (90), Expect = 6e-05
 Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 4/65 (6%)

Query: 55  NEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114
           +   S + S  L +     P    E   +E    G     +C  S      + W+   + 
Sbjct: 2   SSGSSGRTSAMLTVRAL--PIKFTEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHET 57

Query: 115 LVNAE 119
           L + +
Sbjct: 58  LRDGD 62

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 47.3 bits (113), Expect = 2e-08
 Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 12/66 (18%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR-----------IDSVRKEDKGMYQCVIRN 55
            C+        + W K+G+ +    +  +R           I+   K D   Y  +   
Sbjct: 27 LECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG 85

Query: 56 EQESAQ 61
           Q SA+
Sbjct: 86 GQSSAK 91

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 35.4 bits (82), Expect = 7e-04
 Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
             ++ +   D T   G     +C  S      + W+ +G++++   
Sbjct: 7   GIMVTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGP 51

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 47.3 bits (113), Expect = 2e-08
 Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 10/64 (15%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
          F  +    P     W   G+P+          D  + +  + + +    G       N +
Sbjct: 25 FEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTK 83

Query: 58 ESAQ 61
           +A 
Sbjct: 84 SAAN 87

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 48.1 bits (114), Expect = 2e-08
 Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 21/82 (25%)

Query: 7   FTCKYEGNPVK---TISWMKDGKPVPDHNEP------------------VFRIDSVRKED 45
           F  K +   +    TI W K                               +I   +   
Sbjct: 27  FIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNF 86

Query: 46  KGMYQCVIRNEQESAQASGELK 67
            G Y+C +  + +    S +L+
Sbjct: 87  AGNYRCEVTYKDKFDSCSFDLE 108

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 47.0 bits (112), Expect = 3e-08
 Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 10/64 (15%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
           +C+        ++W KDGK +                  +    + + G Y C    +Q
Sbjct: 31 LSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQ 89

Query: 58 ESAQ 61
           S +
Sbjct: 90 LSFR 93

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 47.0 bits (112), Expect = 3e-08
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 11/65 (16%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEPVF----------RIDSVRKEDKGMYQCVIRNE 56
           T +   +    + W+K+G+ +                   I      D   YQCV+  E
Sbjct: 36 LTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE 94

Query: 57 QESAQ 61
          + S +
Sbjct: 95 KCSTE 99

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 46.2 bits (110), Expect = 4e-08
 Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 10/64 (15%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
          F  + E   VK + W + G  +          +       +  V   D+G Y  +  + +
Sbjct: 28 FEAETERAGVK-VRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIAGSSK 86

Query: 58 ESAQ 61
              
Sbjct: 87 VKFD 90

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 48.3 bits (115), Expect = 4e-08
 Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 11/103 (10%)

Query: 21  WMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL--GG 70
            +K+                +P F ID +     G YQC  R      + S  L+L   G
Sbjct: 43  IIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTG 102

Query: 71  RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
            +  P +        L PG N    C ++  P    S   +G+
Sbjct: 103 LYGKPFLSADRG-LVLMPGENISLTCSSAHIPFDRFSLAKEGE 144

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 46.5 bits (110), Expect = 4e-08
 Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 21/82 (25%)

Query: 7   FTCKYEGNPVK---TISWMKDG--------------KPVPDHNEPVF----RIDSVRKED 45
           F+ +  G  +     + W K                    D    V+     I   +   
Sbjct: 24  FSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF 83

Query: 46  KGMYQCVIRNEQESAQASGELK 67
            G Y+C +  + +   ++  L 
Sbjct: 84  TGSYRCEVSTKDKFDCSNFNLT 105

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 47.7 bits (113), Expect = 6e-08
 Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 27/137 (19%)

Query: 7   FTCKY-EGNPVKTISWMKDGKPVP--------------DHNEPVFR----------IDSV 41
              ++  G  V  I+W+ +   +                + +   R          + ++
Sbjct: 18  LPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNL 77

Query: 42  RKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SG 100
           + ED G Y+  I  +  +  +S  L++  +     +    S    N     +  C     
Sbjct: 78  KMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNH-SQLFQNMTCELHLTCSVEDA 136

Query: 101 NPTPEISWYLDGKKLVN 117
           +      W   G  L +
Sbjct: 137 DDNVSFRWEALGNTLSS 153

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 4/59 (6%)

Query: 7   FTCKYE-GNPVKTISWMKDGKPVPDHNEPVFRIDSV-RKEDKGMYQCVIRNEQESAQAS 63
            TC  E  +   +  W   G  +   ++P   +    R   +  Y C+  N   +   S
Sbjct: 129 LTCSVEDADDNVSFRWEALGNTL--SSQPNLTVSWDPRISSEQDYTCIAENAVSNLSFS 185

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 45.9 bits (109), Expect = 8e-08
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 10/64 (15%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKEDKGMYQCVIRNEQ 57
           TC+    P   + W KDG+ V +    + +         + +V+ ED G Y C I +E 
Sbjct: 33 LTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDES 91

Query: 58 ESAQ 61
           S  
Sbjct: 92 ASFT 95

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 45.4 bits (108), Expect = 1e-07
 Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 10/64 (15%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
            C         + W      +          +       + ++R +D G Y C   ++ 
Sbjct: 28 LRCVLSSVAA-PVKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSFGDQT 86

Query: 58 ESAQ 61
           SA 
Sbjct: 87 TSAT 90

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 1/46 (2%)

Query: 70  GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
           G   P   +E+  D  +  G     +C+ S    P + W      L
Sbjct: 4   GSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVL 48

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
           F C+   +    ++W KD + +          + N+    I+ V+ +DKG Y    +N  
Sbjct: 502 FYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY 561

Query: 58  ESAQASGELK 67
            + +    L 
Sbjct: 562 GTKEEIVFLN 571

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 45.1 bits (107), Expect = 1e-07
 Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 10/64 (15%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKEDKGMYQCVIRNEQ 57
           TC+         +W KDG+ V +    V +         +   + +D G ++C      
Sbjct: 30 LTCELSRVDF-PATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVS 88

Query: 58 ESAQ 61
              
Sbjct: 89 AFFG 92

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 12/109 (11%)

Query: 15  PVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
                    +G              N+  F I  +     G Y C+ R  +  ++ S  L
Sbjct: 33  GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLL 92

Query: 67  KL--GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
            L     +D P +        +  G    F C      T       +G+
Sbjct: 93  DLVVTEMYDTPTLSVHPG-PEVISGEKVTFYC-RLDTATSMFLLLKEGR 139

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 10/100 (10%)

Query: 18  TISWMKDGKPVPDHNEP-----VFRIDSVRKEDKGMYQCVI-RNEQESAQASGELKLG-- 69
               +K+G+              F +  V    +G Y+C    N    +  S  +KL   
Sbjct: 131 MFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT 190

Query: 70  GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY 109
           G  +   +  +  D T        +          + + +
Sbjct: 191 GDIENTSL--APEDPTFPADTWGTYLLTTETGLQKDHALW 228

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 45.1 bits (107), Expect = 2e-07
 Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 17/88 (19%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
             C  E + V  + W K  + +          D      +I  +   D G Y C+     
Sbjct: 28  LQC--ELSKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ-- 83

Query: 58  ESAQASGELKLGGRFDPPVIKESFSDET 85
              + S  L +     P    E     +
Sbjct: 84  --ERTSATLTVRAL--PARFTEGSGPSS 107

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 19/120 (15%), Positives = 30/120 (25%), Gaps = 16/120 (13%)

Query: 7   FTCKYEGN---PVKTISWMKDGKPV---PDHNEPV---FRIDSVRKEDKGMYQCVIRNEQ 57
             C+ EG       T+  ++  K +   P   EP      +   R      + C    + 
Sbjct: 106 LRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDL 165

Query: 58  ESAQAS------GELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISWYL 110
                          +L     P    +  S   L         C   G  P  E   +L
Sbjct: 166 RPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHL 225

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 15/107 (14%), Positives = 25/107 (23%), Gaps = 22/107 (20%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF--------RIDSVRKEDKGMYQCVIRNEQE 58
             C  +   +  +      + V                    V+ ED G+Y C    E  
Sbjct: 266 IRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETF 325

Query: 59  SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE 105
           +   S ELK+                      +      A     P+
Sbjct: 326 NETLSVELKVYNFTLHG--------------HHDTLNAAADPWSHPQ 358

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 3/38 (7%), Positives = 12/38 (31%)

Query: 82  SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
           S    + G     +C        ++      +++++  
Sbjct: 254 SAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQG 291

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 44.6 bits (106), Expect = 2e-07
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 7   FTCKYEGNPVKTISWMKDGKPV---------PDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
           FTCK   +P  T++W K    +          +       I ++ K D   Y C I    
Sbjct: 28  FTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDI---- 82

Query: 58  ESAQASGELKLGGRFDPPV 76
             AQ+  +L + GR   P 
Sbjct: 83  GQAQSRAQLLVQGRRSGPS 101

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 45.6 bits (108), Expect = 3e-07
 Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 12/109 (11%)

Query: 15  PVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG-- 64
                    +G              N+  F I  +     G Y C+ R  +  ++ S   
Sbjct: 30  GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLL 89

Query: 65  ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
           +L +   +D P +        +  G    F C      T       +G+
Sbjct: 90  DLVVTEMYDTPTLSVHPG-PEVISGEKVTFYC-RLDTATSMFLLLKEGR 136

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 44.3 bits (104), Expect = 4e-07
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 19/76 (25%)

Query: 7   FTCKYEGNP--VKTISWMKDGKPVPDHNEPVF-----------------RIDSVRKEDKG 47
           FTC    +     T +W  D + + D     +                 R+ +V    +G
Sbjct: 30  FTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEG 89

Query: 48  MYQCVIRNEQESAQAS 63
            YQCVI N   S+ + 
Sbjct: 90  XYQCVISNHFGSSYSV 105

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 41.2 bits (96), Expect = 5e-06
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 72  FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS--WYLDGKKLVNAE 119
           F  P I      ++   G +  F C A+ +    ++  W  D + L +AE
Sbjct: 8   FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAE 57

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 4e-07
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVF---------RIDSVRKEDKGMYQCVIRNEQ 57
           F C+ +G+P   I W+   K +                  +   + +D G Y C+  N  
Sbjct: 405 FVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAG 464

Query: 58  ESAQASGEL 66
            +      L
Sbjct: 465 GNDSMPAHL 473

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 6e-06
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 71  RFDPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
                 I++       ++ G    F C A G+P P I W    K LV+A+
Sbjct: 381 TCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAK 430

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 43.5 bits (103), Expect = 5e-07
 Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR---------IDSVRKEDKGMYQCVIRNEQ 57
          F  +   +P   + W K+G+ +    + +F          I++ +  D   Y     +E+
Sbjct: 28 FVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAGDEK 86

Query: 58 ESAQ 61
           S +
Sbjct: 87 CSTE 90

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 44.8 bits (106), Expect = 8e-07
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 12/110 (10%)

Query: 15  PVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
             +     K+  P P          N+  F I S+ ++  G Y+C  R+    +Q S  L
Sbjct: 31  EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPL 90

Query: 67  KL--GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK 114
           +L   G +  P +    S   +  G +    C  S +P        +   
Sbjct: 91  ELVMTGAYSKPTLSALPS-PLVTSGKSVTLLC-QSRSPMDTFLLCKERAA 138

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 42.9 bits (101), Expect = 1e-06
 Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 18/66 (27%)

Query: 6  FFTCKYEGNPVKTISWMKDGKPV------------------PDHNEPVFRIDSVRKEDKG 47
            TC+ + N   ++ W    +                       +E    +  V   D+G
Sbjct: 25 ILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEG 84

Query: 48 MYQCVI 53
           Y C +
Sbjct: 85 QYTCSL 90

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 19/107 (17%), Positives = 29/107 (27%), Gaps = 6/107 (5%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
            TC  +      I+W  D       +     I      D G Y C    E  S      L
Sbjct: 26  LTC--DTPEEDGITWTLDQSSEVLGSGKTLTIQVKEFGDAGQYTCHKGGEVLSHS----L 79

Query: 67  KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
            L  + +  +       +   P    + +C A         W+L   
Sbjct: 80  LLLHKKEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTI 126

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 5/103 (4%)

Query: 15  PVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG--ELKLGGRF 72
            V      K        ++ V  I ++++   G Y+C  +N    +  S   EL   G F
Sbjct: 34  GVDLYRLEKLSSSRY-QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVF 92

Query: 73  DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
             P +        ++ G +   +C  +     + + Y +G   
Sbjct: 93  AKPSLSAQPG-PAVSSGGDVTLQCQ-TRYGFDQFALYKEGDPA 133

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 13/117 (11%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQE 58
             C+      +    +K+G P P          N+  F I S+ +   G Y+C   +   
Sbjct: 24  IRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAG 82

Query: 59  SAQASGELKL--GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
            ++ S  L+L   G ++ P +    S   +  G N   +C  S           +G 
Sbjct: 83  WSEPSDPLELVVTGFYNKPTLSALPS-PVVTSGENVTLQC-GSRLRFDRFILTEEGD 137

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 43.4 bits (101), Expect = 3e-06
 Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 15/123 (12%)

Query: 7   FTCKYEG-NPVKTISWMKDGKPVP----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ 61
            TC+    +   ++ W      +     D    V  + +      G   CV      + Q
Sbjct: 27  LTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQ 86

Query: 62  ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNP-----TPEISWYLDGKKLV 116
            + +L +    +   +    S   L PG +    C A             S  + G++L 
Sbjct: 87  HTVQLLVYAFPNQLTV----SPAALVPG-DPEVACTAHKVTPVDPNALSFSLLVGGQELE 141

Query: 117 NAE 119
            A+
Sbjct: 142 GAQ 144

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 42.2 bits (99), Expect = 3e-06
 Identities = 12/78 (15%), Positives = 19/78 (24%), Gaps = 17/78 (21%)

Query: 7   FTCKYEGNPV-KTISWMKDGKPVPDHNEPVFR---------------IDSVRKEDKG-MY 49
             C     P    I+W      +       +                I ++ + D   +Y
Sbjct: 33  IKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIY 92

Query: 50  QCVIRNEQESAQASGELK 67
            C   N   S      LK
Sbjct: 93  NCTAWNSFGSDTEIIRLK 110

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 39.5 bits (92), Expect = 3e-05
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 59  SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE-ISWYLDGKKL 115
           S+ +SG L + G   PP+I  S   +    G     KC     P P+ I+W      L
Sbjct: 2   SSGSSGTLTVNG---PPII-SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVL 55

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 41.1 bits (96), Expect = 7e-06
 Identities = 8/68 (11%), Positives = 21/68 (30%), Gaps = 18/68 (26%)

Query: 7  FTCKYEGNPVKTISWMKDGKPV------------------PDHNEPVFRIDSVRKEDKGM 48
            C        ++ W+                           N+    + +V  +D+G+
Sbjct: 21 LKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGV 80

Query: 49 YQCVIRNE 56
          Y+C+  ++
Sbjct: 81 YKCLHYSD 88

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 40.9 bits (95), Expect = 8e-06
 Identities = 12/90 (13%), Positives = 24/90 (26%), Gaps = 22/90 (24%)

Query: 7   FTCKYEG--NPVKTISWMKDGKPVPDHNEP-----------------VFRIDSVRKEDKG 47
             C      N     +W                                 ID V + D+G
Sbjct: 28  LNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQG 87

Query: 48  MYQCVIRNEQESAQASGELKLGGRFDPPVI 77
           +Y C   +   + + S  +++    + P +
Sbjct: 88  LYTCAASSGLMTKKNSTFVRV---HEKPFV 114

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 41.4 bits (97), Expect = 1e-05
 Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 20  SWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG-----ELKLGGRFDP 74
           +    G+     ++  F I  + ++  G Y+C         Q S      ++ + G ++ 
Sbjct: 49  TLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEK 108

Query: 75  PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
           P +  +    T+  G N    C +S +         +G+
Sbjct: 109 PSL-SAQPGPTVLAGENVTLSC-SSRSSYDMYHLSREGE 145

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 9/107 (8%)

Query: 12  EGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG-----EL 66
           EG      +    G+     ++  F I  + ++  G Y+C         Q S      ++
Sbjct: 42  EGKF--KDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDI 99

Query: 67  KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
            + G ++ P +       T+  G +    C +S +         +G+
Sbjct: 100 VITGLYEKPSLSAQPG-PTVLAGESVTLSC-SSRSSYDMYHLSREGE 144

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 39.7 bits (93), Expect = 5e-05
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 11/70 (15%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR----------IDSVRKEDKGMYQCVIRNE 56
             C+     + ++SW+     V  H     R            +V  +D GMY C++ N 
Sbjct: 361 LKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNS 419

Query: 57  QESAQASGEL 66
             +  AS  L
Sbjct: 420 VGNTTASATL 429

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 73  DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
             PVI E  +D  +  G     KC AS      +SW      ++   
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHG 385

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius} Length = 82

 Score = 37.3 bits (86), Expect = 9e-05
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSV-RKEDKGMYQCVIRNEQESA 60
           TC  + +    + W K+G+ +P  ++    +      ED G Y C      ++ 
Sbjct: 19 LTCPLDSDE--NLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNT 71

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 12/70 (17%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR----------IDSVRKEDKGMYQCVIRNE 56
             C+    P+ ++ W+     V  H     R             V   D G+Y C++ N 
Sbjct: 372 LKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNV 429

Query: 57  QESAQASGEL 66
             ++ AS  L
Sbjct: 430 AGNSNASAYL 439

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 37.0 bits (86), Expect = 6e-04
 Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 73  DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNAE 119
             P I ++  D  ++ G     KC     P   + W L    +++  
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHA 395

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 12/60 (20%), Positives = 16/60 (26%), Gaps = 7/60 (11%)

Query: 7  FTCK-YEGNPVKTISWMKDGKPVPDHNEPVF------RIDSVRKEDKGMYQCVIRNEQES 59
           TC   E     T+ W+        H            + SV+  D G Y C        
Sbjct: 26 LTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAG 85

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 13/110 (11%)

Query: 15  PVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG-- 64
             +     ++ K  P           +  F I S+  E  G Y+C   ++      S   
Sbjct: 31  ETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDP 90

Query: 65  -ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
            EL + G +  P +    S   +N G N   +C  S           +G+
Sbjct: 91  LELVVTGAYIKPTLSAQPS-PVVNSGGNVTLQC-DSQVAFDGFILCKEGE 138

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 37.5 bits (86), Expect = 3e-04
 Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 18/66 (27%)

Query: 6   FFTCKYEGNPVKTISWMKDGKPVPDHNEPVF------------------RIDSVRKEDKG 47
              C+ + +   ++ W    +      E                      I +V   D+G
Sbjct: 57  VLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEG 116

Query: 48  MYQCVI 53
            Y C I
Sbjct: 117 EYTCSI 122

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 36.3 bits (83), Expect = 4e-04
 Identities = 11/65 (16%), Positives = 16/65 (24%), Gaps = 11/65 (16%)

Query: 6  FFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRI---------DSVRKEDKGMYQCVIRNE 56
            TC     P   I W  + K +    +              +    E  G Y C  R  
Sbjct: 25 ILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGS 82

Query: 57 QESAQ 61
          +    
Sbjct: 83 KPEDA 87

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 36.0 bits (83), Expect = 5e-04
 Identities = 13/96 (13%), Positives = 27/96 (28%), Gaps = 25/96 (26%)

Query: 7   FTCKYEGNP--VKTISWMKDGKPVPDHNE-------PVFR------------IDSVRKED 45
             C        V  ++W +  + +   N        P F+            + S+   D
Sbjct: 23  LQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVND 82

Query: 46  KGMYQCVIR-NEQESAQASGELKLGGRFDPPVIKES 80
            G Y C+       +      L++    +  V +  
Sbjct: 83  TGEYFCIYHTYPDGTYTGRIFLEV---LESSVAEHG 115

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 36.8 bits (85), Expect = 6e-04
 Identities = 16/117 (13%), Positives = 30/117 (25%), Gaps = 13/117 (11%)

Query: 7   FTCKYEGNPVKTISWMKDGK-PVPDHNEPV----FRIDSVRKEDKGMYQCVIRNEQESAQ 61
             C Y           K+ +  +P  +  +    F +  V     G Y C   +      
Sbjct: 43  LRCHYRH-RFNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTG 101

Query: 62  ASG-----ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
            S       + + G    P +        +  G     +C  S         + +G 
Sbjct: 102 WSAPSNPVVIMVTGNHRKPSLLAH-PGPLVKSGERVILQC-WSDIMFEHFFLHKEGI 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.91
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.9
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.9
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.89
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.89
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.89
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.88
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.88
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.88
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.88
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.88
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.88
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.88
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.88
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.88
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.88
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.88
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.87
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.87
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.87
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.86
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.86
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.86
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.86
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.86
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.86
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.86
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.86
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.85
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.85
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.85
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.85
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.85
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.85
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.85
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.85
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.85
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.85
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.85
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.85
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.84
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.84
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.84
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.84
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.84
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.84
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.84
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.84
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.84
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.84
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.84
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.84
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.83
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.83
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.83
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.83
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.83
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.83
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.83
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.83
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.82
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.82
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.82
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.82
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.82
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.82
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.82
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.82
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.82
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.81
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.81
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.81
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.81
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.8
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.8
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.8
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.8
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.8
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.8
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.8
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.8
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.8
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.8
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.8
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.8
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.8
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.79
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.79
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.79
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.79
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.78
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.78
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.78
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.78
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.78
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.78
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.78
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.78
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.77
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.77
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.77
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.77
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.77
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.77
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.77
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.77
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.77
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.77
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.77
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.77
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.77
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.76
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.76
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.76
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.76
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.76
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.76
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.76
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.76
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.76
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.76
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.76
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.76
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.76
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.75
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.75
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.75
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.75
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.75
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.75
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.75
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.75
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.75
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.75
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.74
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.74
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.74
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.74
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.74
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.74
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.74
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.74
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.74
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.74
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.73
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.73
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.73
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.73
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.73
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.73
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.73
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.73
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.73
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.73
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.73
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.72
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.72
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.72
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.72
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.72
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.72
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.72
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.72
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.72
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.72
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.71
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.71
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.71
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.71
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.71
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.71
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.71
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.71
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.71
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.71
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.71
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.7
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.7
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.7
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.7
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.7
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.7
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.7
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.7
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.7
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.7
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.7
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.7
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.7
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.7
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.7
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.7
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.69
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.69
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.69
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.69
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.69
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.69
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.68
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.68
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.68
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.68
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.68
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.68
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.67
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.67
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.67
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.67
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.67
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.66
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.66
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.66
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.66
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.65
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.65
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.65
2ens_A	96	Advanced glycosylation END product-specific recept	99.65
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.65
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.64
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.64
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.64
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.64
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.64
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.63
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.63
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.63
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.63
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.63
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.62
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.62
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.62
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.62
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.62
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.62
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.62
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.62
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.61
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.61
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.61
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.61
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.61
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.61
1he7_A	126	High affinity nerve growth factor receptor; transf	99.6
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.6
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.6
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.6
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.6
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.6
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.6
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.59
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.59
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.59
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.59
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.59
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.59
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.59
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.58
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.58
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.58
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.57
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.57
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.57
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.57
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.56
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.56
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.56
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.56
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.56
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.56
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.56
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.55
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.55
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.53
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.53
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.52
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.51
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.51
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.51
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.51
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.49
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.49
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.48
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.45
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.44
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.44
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.44
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.44
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.43
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.43
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.43
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.43
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.43
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.43
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.42
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.42
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.42
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.42
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.41
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.41
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.41
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.4
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.4
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.4
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.4
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.4
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.39
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.39
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.39
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.38
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.38
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.38
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.38
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.37
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.37
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.37
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.37
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.37
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.37
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.36
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.36
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.35
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.35
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.35
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.35
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.34
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.34
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.34
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	99.33
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.33
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.33
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.33
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.32
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.32
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.32
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.31
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.31
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.31
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.31
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.31
3c6l_A	185	TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus	98.98
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.31
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.3
3rgv_A	200	YAE62 TCR A chain; TCR, MHC, MHC class I, immune s	99.3
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.3
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.29
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.29
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.29
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.29
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.29
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.29
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.28
3mbe_C	229	I-AG7; T cell receptor, histocompatability antigen	99.28
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.28
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.28
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.28
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.27
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.26
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.26
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.26
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	99.26
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	99.26
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.25
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.25
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.25
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.25
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.25
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.25
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.24
4ei6_A	208	Valpha1 XV19 type II natural killer T cell recept	99.24
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.23
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	99.23
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	99.22
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.22
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.22
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.21
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.21
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	99.2
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.2
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.19
3gsn_A	199	RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human	99.19
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.19
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.17
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.17
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.16
3tjh_C	226	42F3 alpha; IG MHC, antigen recognition, TCR-PMHC,	99.16
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	99.15
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	99.15
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	99.14
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	99.14
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	99.13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.13
3khq_A	133	B-cell antigen receptor complex-associated protei	99.12
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.12
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.12
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.11
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	99.11
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.11
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	99.1
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.1
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.1
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	99.09
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	99.07
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	99.06
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.06
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	99.06
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	99.06
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.05
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.05
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.05
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.05
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.04
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	99.04
1xt5_A	135	Variable region-containing chitin-binding protein	99.04
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	99.03
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	99.03
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.02
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	99.02
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.01
1lp9_E	194	T-cell receptor alpha chain; immunoregulatory comp	99.01
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.01
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.01
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.01
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	99.0
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.0
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	99.0
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	99.0
4esk_A	102	LAIR-1, mlair1, leukocyte-associated immunoglobuli	98.99
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	98.99
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.99
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	98.99
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	98.98
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	98.98
4ety_A	118	LAIR-1, mlair1, leukocyte-associated immunoglobuli	98.98
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	98.98
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.97
2nw2_A	200	ELS4 TCR alpha chain; T cell receptor, immune syst	98.97
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	98.97
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	98.96
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.96
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.96
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.96
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.96
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.96
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	98.95
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.95
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.95
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.95
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	98.95
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.94
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.93
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	98.93
4f9l_D	259	20.1 anti-BTN3A1 antibody fragment; B7 superfamily	98.93
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	98.92
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	98.92
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.92
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.92
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	98.92
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	98.92
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.92
1oga_D	215	T-cell receptor alpha chain V region, beta-2-micro	98.92
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.91
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.9
2jjs_C	127	Leukocyte surface antigen CD47; signal regulatory	98.9
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.9
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.9
1kgc_D	206	T-cell receptor alpha chain; LC13 clone, immune sy	98.9
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.89
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	98.89
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.89
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	98.89
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	98.89
2q86_A	229	Valpha14 TCR; INKT cells, TCR, glycolipid recognit	98.89
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	98.88
1xiw_B	79	T-cell surface glycoprotein CD3 delta chain; CD3-e	98.88
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.88
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	98.88
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	98.88
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	98.87
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.87
3kg5_A	134	B-cell antigen receptor complex-associated protei	98.86
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.86
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.85
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.85
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	98.85
2ak4_D	211	SB27 T cell receptor alpha chain; bulged epitopes,	98.84
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.84
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.83
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.82
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	98.82
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.82
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.82
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	98.82
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	98.82
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	98.81
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.8
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	98.8
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	98.79
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.79
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	98.79

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.91  E-value=2e-23  Score=115.70  Aligned_cols=117  Identities=24%  Similarity=0.453  Sum_probs=94.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC-----------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~-----------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....           ...|.|.+++..|.|.|.|.+.+..+.......+.+.
T Consensus        19 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~   98 (194)
T 2a38_A           19 EGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVK   98 (194)
T ss_dssp             TTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCceEeEEEEEEEc
Confidence            48999999999988888999999988765431           3479999999999999999999887655555556654


Q ss_pred             eecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         70 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ....+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus        99 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~  146 (194)
T 2a38_A           99 AETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQS  146 (194)
T ss_dssp             CCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCC
T ss_pred             cCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCC
Confidence            333456666656566788999999999999999999999999988754

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.90  E-value=5.5e-22  Score=111.56  Aligned_cols=117  Identities=28%  Similarity=0.485  Sum_probs=90.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC----------CCCeEEEecC-CCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSV-RKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~----------~~~~l~~~~~-~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...          ....|.|.++ +..|.|.|.|.+.+..+.......+.+.
T Consensus        20 ~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~   99 (212)
T 2yd6_A           20 SGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVL   99 (212)
T ss_dssp             TTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcEEEEEEEEEe
Confidence            4899999999998898999999999877542          2346899999 4999999999999987655445555554


Q ss_pred             ee----cCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         70 GR----FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        70 ~~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ..    ...|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus       100 ~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~  151 (212)
T 2yd6_A          100 REDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDT  151 (212)
T ss_dssp             CGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC--
T ss_pred             ccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccC
Confidence            31    1125555555555677899999999999999999999999988764

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.90  E-value=1.2e-21  Score=110.67  Aligned_cols=117  Identities=22%  Similarity=0.458  Sum_probs=93.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCc-eeEeeEEEeeec-------
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESA-QASGELKLGGRF-------   72 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~-~~~~~~~v~~~~-------   72 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+.......|.|.+++..|.|.|.|.+.+..+.. .....+.+....       
T Consensus        32 ~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~  111 (218)
T 3k0w_A           32 AGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSV  111 (218)
T ss_dssp             TTSBEEEECEETTTTSSEEEEEETTEECTTCCSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTC
T ss_pred             CCCcEEEEeeecCCCCCEEEEEECCEECCCCCCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCccccccc
Confidence            489999999999988899999999998877778899999999999999999999875432 223344443210       


Q ss_pred             -----CCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         73 -----DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        73 -----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                           .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus       112 ~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~  161 (218)
T 3k0w_A          112 DGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTH  161 (218)
T ss_dssp             CSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTT
T ss_pred             ccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCC
Confidence                 114555556566788999999999999999999999999998754

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.89  E-value=2.8e-23  Score=116.41  Aligned_cols=110  Identities=15%  Similarity=0.252  Sum_probs=85.0

Q ss_pred             CCccEEEEEE---eccCCCCeeEEeeCCccCCC--------------------------CCCCeEEEecCCCCCCeEEEE
Q psy12725          1 MLALKFFTCK---YEGNPVKTISWMKDGKPVPD--------------------------HNEPVFRIDSVRKEDKGMYQC   51 (119)
Q Consensus         1 ~g~~~~l~c~---~~~~~~~~v~w~~~~~~~~~--------------------------~~~~~l~~~~~~~~d~g~y~C   51 (119)
                      +|+.+.|.|.   +.+.|.+.|.|+|++.....                          .....|.|.+++.+|+|.|.|
T Consensus         7 ~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   86 (203)
T 4fa8_A            7 LGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLC   86 (203)
T ss_dssp             TTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             cCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCeEEEE
Confidence            5999999996   45668899999997643210                          123469999999999999999


Q ss_pred             EEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCE
Q psy12725         52 VIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK  113 (119)
Q Consensus        52 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~  113 (119)
                      .+.+..+.......+.+.   .||.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.
T Consensus        87 ~a~n~~g~~~~~~~l~V~---~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~  145 (203)
T 4fa8_A           87 RMKLGETEVTKQEHLSVV---KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG  145 (203)
T ss_dssp             EEEETTEEEEEEEEEEEE---EEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC--
T ss_pred             EEEcCCCcEEEEEEEEec---CCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCe
Confidence            999987665555555553   35666666666678899999999999999999999987654

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.89  E-value=6.2e-22  Score=109.93  Aligned_cols=115  Identities=23%  Similarity=0.418  Sum_probs=90.9

Q ss_pred             CCccEEEEEEec-cCCCCeeEEeeCCccCCCCC------------------CCeEEEecCCCCCCeEEEEEEEcCCCCce
Q psy12725          1 MLALKFFTCKYE-GNPVKTISWMKDGKPVPDHN------------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQ   61 (119)
Q Consensus         1 ~g~~~~l~c~~~-~~~~~~v~w~~~~~~~~~~~------------------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~   61 (119)
                      .|+.+.|.|.+. +.|.+.+.|++++..+....                  ...|.|.+++..|.|.|.|.+.+..+...
T Consensus        16 ~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~   95 (195)
T 2c5d_C           16 RGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFV   95 (195)
T ss_dssp             TTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEETTEEEE
T ss_pred             cCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEeCCCcee
Confidence            489999999998 88889999999998775431                  25799999999999999999998754321


Q ss_pred             eEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCC-eEEEEECCEEccc
Q psy12725         62 ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVN  117 (119)
Q Consensus        62 ~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~  117 (119)
                       +..+.+.+ ..+|.+...+....+.+|+.+.|.|.+.+.|.| .+.|++++..+..
T Consensus        96 -~~~~~l~V-~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~  150 (195)
T 2c5d_C           96 -SQPGYVGL-EGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLAT  150 (195)
T ss_dssp             -CCCEEEEE-CCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSS
T ss_pred             -cccEEEEE-ecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccC
Confidence             22233333 246777766666678899999999999999999 9999999987764

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.89  E-value=2.6e-21  Score=108.72  Aligned_cols=117  Identities=30%  Similarity=0.527  Sum_probs=91.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC-----------CCeEEEecCCC-CCCeEEEEEEEcCCCC-ceeEeeEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRK-EDKGMYQCVIRNEQES-AQASGELK   67 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~-----------~~~l~~~~~~~-~d~g~y~C~~~~~~~~-~~~~~~~~   67 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....           ...|.|.+++. .|.|.|.|.+.+..+. ......+.
T Consensus        20 ~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~   99 (212)
T 2yd1_A           20 VGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLT   99 (212)
T ss_dssp             TTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEE
T ss_pred             cCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEE
Confidence            48999999999998989999999998775211           14789999999 9999999999998765 44455555


Q ss_pred             Eeeec----CCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         68 LGGRF----DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        68 v~~~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      +....    ..|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus       100 V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~  153 (212)
T 2yd1_A          100 IYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDM  153 (212)
T ss_dssp             EECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCT
T ss_pred             EecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEccc
Confidence            54311    125666655556678899999999999999999999999988764

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.88  E-value=2.5e-21  Score=107.18  Aligned_cols=111  Identities=24%  Similarity=0.430  Sum_probs=90.1

Q ss_pred             CccEEEEEEeccCCC--CeeEEeeCCccCCCC----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCC
Q psy12725          2 LALKFFTCKYEGNPV--KTISWMKDGKPVPDH----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP   75 (119)
Q Consensus         2 g~~~~l~c~~~~~~~--~~v~w~~~~~~~~~~----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~   75 (119)
                      |+.+.|.|.+.+.+.  +.+.|++++..+...    ....|.|.+++..|.|.|.|.+.+. +.......+.+.   .+|
T Consensus        18 G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~~~~l~V~---~~p   93 (190)
T 2wv3_A           18 LLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVK---AAP   93 (190)
T ss_dssp             SSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCCSEEEEEESSCCGGGCEEEEEEEEET-TEEEEEEEEEEE---CCC
T ss_pred             CceEEEEEEeccCCCCceEEEEEECCEECcccceEeccEEEEEecCCcccCEEEEEEEEeC-CcccccEEEEEe---cCC
Confidence            899999999988776  789999999877543    2357999999999999999999987 444444444443   467


Q ss_pred             eeeecCCccccCCCCcEEEEeEEccCCCCeEEEEE--CCEEcc
Q psy12725         76 VIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL--DGKKLV  116 (119)
Q Consensus        76 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~--~~~~~~  116 (119)
                      .+...+....+..|+.+.|.|.+.+.|.+.+.|++  ++..+.
T Consensus        94 ~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~  136 (190)
T 2wv3_A           94 DITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEE  136 (190)
T ss_dssp             EEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEE
T ss_pred             cccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceee
Confidence            77766666678899999999999999999999999  777653

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.88  E-value=1.5e-21  Score=123.32  Aligned_cols=117  Identities=26%  Similarity=0.466  Sum_probs=93.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGR   71 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~   71 (119)
                      .|+.+.|.|.+.+.|.+.|.|||++..+...         ....|.|.+++.+|.|.|.|.+.|..+.......+.+...
T Consensus        19 ~G~~v~L~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~v~~~   98 (570)
T 3b43_A           19 IGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKER   98 (570)
T ss_dssp             TTSCEEEEEEEESSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEECCC
T ss_pred             CCCEEEEEEEEccCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEeCCceEEEEEEEEECCC
Confidence            3899999999999999999999999877432         2256899999999999999999998765555555555432


Q ss_pred             cCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         72 FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        72 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ..+|.+...+.......|+.+.|.|.+.+.|++.+.|++||..+..
T Consensus        99 ~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~  144 (570)
T 3b43_A           99 KLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKD  144 (570)
T ss_dssp             CCCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCC
T ss_pred             CCCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcC
Confidence            3456666555555667899999999999999999999999998764

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.88  E-value=2.7e-21  Score=106.26  Aligned_cols=114  Identities=25%  Similarity=0.452  Sum_probs=91.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC-----------CCeEEEecCCCCCCeEEEEEEEcCCCCc-eeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQESA-QASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~-----------~~~l~~~~~~~~d~g~y~C~~~~~~~~~-~~~~~~~v   68 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....           ...|.|.+++..|.|.|.|.+.+..+.. .....+.+
T Consensus        16 ~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V   95 (182)
T 1rhf_A           16 QGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTV   95 (182)
T ss_dssp             TTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEE
T ss_pred             CCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEE
Confidence            48999999999988888999999998775431           2578899999999999999999874432 22344444


Q ss_pred             eeecCCCeeeecCCccccCCCCcEEEEeEEccCCCC-eEEEEECCEEccc
Q psy12725         69 GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVN  117 (119)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~  117 (119)
                      .   .+|.+...+....+..|+.+.|.|.+.+.|.| .+.|++++..+..
T Consensus        96 ~---~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~  142 (182)
T 1rhf_A           96 E---GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGG  142 (182)
T ss_dssp             E---CSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSC
T ss_pred             e---cCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCC
Confidence            2   46777776666678899999999999999998 9999999988754

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.88  E-value=5.4e-21  Score=111.38  Aligned_cols=114  Identities=26%  Similarity=0.495  Sum_probs=93.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGR   71 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~   71 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....         ...|.|.+++..|.|.|.|.+.+..+.......+.+.  
T Consensus       113 ~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~--  190 (284)
T 2rik_A          113 QDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK--  190 (284)
T ss_dssp             TTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEE--
T ss_pred             CCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEe--
Confidence            37899999999998999999999998775432         3568899999999999999999987665555555553  


Q ss_pred             cCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         72 FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        72 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                       .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus       191 -~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~  235 (284)
T 2rik_A          191 -EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS  235 (284)
T ss_dssp             -CCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECB
T ss_pred             -cCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcC
Confidence             466666666566678999999999999999999999999988764

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.88  E-value=2.6e-21  Score=107.50  Aligned_cols=117  Identities=23%  Similarity=0.355  Sum_probs=87.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------C--CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------E--PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~--~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....         .  ..|.|.+++..|.|.|.|.+.+..+.......+.+.
T Consensus        18 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~V~   97 (197)
T 2j8h_A           18 YQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE   97 (197)
T ss_dssp             TTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCceeEEEEEEEc
Confidence            48999999999998889999999988765321         1  289999999999999999999886555445555554


Q ss_pred             ee--cCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         70 GR--FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        70 ~~--~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ..  ...|.....+....+..|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus        98 ~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~  147 (197)
T 2j8h_A           98 VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDN  147 (197)
T ss_dssp             EEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECS
T ss_pred             CCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeec
Confidence            31  1111111122334567899999999999999999999999987753

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.88  E-value=1.7e-21  Score=108.03  Aligned_cols=114  Identities=23%  Similarity=0.465  Sum_probs=87.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGR   71 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~   71 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....         ...|.|.+++..|.|.|.|.+.+..+.......+.+.. 
T Consensus        21 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~-   99 (197)
T 3lcy_A           21 LGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQA-   99 (197)
T ss_dssp             TTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEEEEEE-
T ss_pred             CCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCceeEEEEEEEEc-
Confidence            48999999999888888999999987764322         12799999999999999999998876655555555543 


Q ss_pred             cCCCeeeec---CCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         72 FDPPVIKES---FSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        72 ~~~~~~~~~---~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                        +|.+...   .....+..|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus       100 --~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~  146 (197)
T 3lcy_A          100 --TPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQN  146 (197)
T ss_dssp             --EEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCC
T ss_pred             --CCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCC
Confidence              2222211   1233457899999999999999999999999988764

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.88  E-value=1.2e-21  Score=115.18  Aligned_cols=117  Identities=26%  Similarity=0.462  Sum_probs=93.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC---------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeE-eeEEEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS-GELKLGG   70 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~-~~~~v~~   70 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+..         .....|.|..++..|.|.|.|.+.+..+..... ..+.+.+
T Consensus       122 ~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~  201 (304)
T 2yd9_A          122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRV  201 (304)
T ss_dssp             TTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEe
Confidence            388999999999999999999999876642         134579999999999999999999986543322 3455543


Q ss_pred             ecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         71 RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ...+|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+..
T Consensus       202 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~  248 (304)
T 2yd9_A          202 QNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTP  248 (304)
T ss_dssp             CCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSC
T ss_pred             eccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCC
Confidence            23466777666666788999999999999999999999999998764

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.88  E-value=2.4e-21  Score=117.31  Aligned_cols=114  Identities=28%  Similarity=0.571  Sum_probs=92.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC-CccCCC-----CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD-GKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDP   74 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~-~~~~~~-----~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~   74 (119)
                      .|+.+.|.|.+.+.|.+.+.|+++ +..+..     .....|.|.+++.+|.|.|+|.+.|..+.......+.+..   +
T Consensus       219 ~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~---~  295 (384)
T 3kld_A          219 KGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA---Q  295 (384)
T ss_dssp             TTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE---E
T ss_pred             CCCcEEEEEEEeecCCCcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEec---C
Confidence            388999999999999999999995 434422     2356899999999999999999999877665556666543   5


Q ss_pred             CeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      |.+...+....+..|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus       296 P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~  338 (384)
T 3kld_A          296 PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLT  338 (384)
T ss_dssp             EEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCC
T ss_pred             CccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCC
Confidence            6666556666788999999999999999999999999998754

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.88  E-value=4.4e-21  Score=121.18  Aligned_cols=117  Identities=25%  Similarity=0.434  Sum_probs=96.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGR   71 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~   71 (119)
                      .|+.+.|.|.+.+.|.+.+.|+|++..+....         ...|.|..+...|.|.|.|.+.|..+.......+.+...
T Consensus       115 ~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  194 (570)
T 3b43_A          115 LGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEH  194 (570)
T ss_dssp             TTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCC
Confidence            38899999999998889999999998875432         246888899999999999999998766655666666554


Q ss_pred             cCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         72 FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        72 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus       195 ~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~  240 (570)
T 3b43_A          195 EVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRP  240 (570)
T ss_dssp             CCCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCT
T ss_pred             CCCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcC
Confidence            4577777777666788999999999999999999999999988754

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.88  E-value=4e-21  Score=106.24  Aligned_cols=114  Identities=22%  Similarity=0.500  Sum_probs=90.6

Q ss_pred             CCccEEEEEEeccCC-CCeeEEee-CCccCCCC-----------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          1 MLALKFFTCKYEGNP-VKTISWMK-DGKPVPDH-----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~-~~~v~w~~-~~~~~~~~-----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      .|+.+.|.|.+.+.+ .+.+.|++ ++..+...           ....|.|.+++..|.|.|.|.+.+..+ ......+.
T Consensus        16 ~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~   94 (191)
T 1epf_A           16 VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDG-TQSEATVN   94 (191)
T ss_dssp             TTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTT-EEEEEEEE
T ss_pred             CCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCC-cceEEEEE
Confidence            489999999999876 78999999 77766421           236799999999999999999999863 22334444


Q ss_pred             EeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         68 LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        68 v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      +.+. .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus        95 l~v~-~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~  142 (191)
T 1epf_A           95 VKIF-QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVI  142 (191)
T ss_dssp             EEEE-CCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGG
T ss_pred             EEee-cCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEee
Confidence            4432 56777766666678899999999999999999999999999875

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.88  E-value=2.3e-21  Score=117.58  Aligned_cols=114  Identities=27%  Similarity=0.550  Sum_probs=95.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDP   74 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~   74 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....      ...|.|..++..|.|.|.|.+.|..+.......+.+.   .+
T Consensus       236 ~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~---~~  312 (404)
T 3p3y_A          236 RGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK---AA  312 (404)
T ss_dssp             TTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEE---EE
T ss_pred             cCCCEEEEEEECCCCCCcEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEe---CC
Confidence            38899999999998989999999998775432      4689999999999999999999987765555555554   35


Q ss_pred             CeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      |.+...+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+..
T Consensus       313 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~  355 (404)
T 3p3y_A          313 PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQS  355 (404)
T ss_dssp             EEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGG
T ss_pred             CeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCC
Confidence            6666666666788999999999999999999999999998864

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.87  E-value=4.5e-21  Score=106.73  Aligned_cols=112  Identities=18%  Similarity=0.257  Sum_probs=74.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC--------CCCCeEEEecCCCCCCeEEEEEEEcCCCCcee--EeeEEEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD--------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA--SGELKLGG   70 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~--------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~--~~~~~v~~   70 (119)
                      .|+.|+|.|.+.+.+. .+.|+|++..+..        .....|.|.+++..|.|.|.|.+.+..+....  ...+.+..
T Consensus        18 ~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~   96 (196)
T 2d3v_A           18 RGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTG   96 (196)
T ss_dssp             TTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEEC
T ss_pred             CCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecC
Confidence            4899999999987665 8999999876632        23467999999999999999999886542222  23444433


Q ss_pred             ecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEc
Q psy12725         71 RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL  115 (119)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~  115 (119)
                      ...+|.+...+ ...+.+|+.+.|.|.+.+.| +.+.|+|+|..+
T Consensus        97 ~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~  139 (196)
T 2d3v_A           97 FYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHK  139 (196)
T ss_dssp             SSCCCEEEC------------CEEEEEESSCC-SEEEEEEC---C
T ss_pred             CCCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcc
Confidence            22356555443 34678999999999999888 899999999876

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.87  E-value=4.9e-21  Score=105.94  Aligned_cols=114  Identities=26%  Similarity=0.478  Sum_probs=90.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC--------CCCeEEEecCCCCCCeEEEEEEEcCCCCc-eeEeeEEEeee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESA-QASGELKLGGR   71 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~-~~~~~~~v~~~   71 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...        ....|.|.+++..|.|.|.|.+.+..+.. .....+.+.  
T Consensus        21 ~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~--   98 (192)
T 2iep_A           21 VEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK--   98 (192)
T ss_dssp             TTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEE--
T ss_pred             CCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEE--
Confidence            4899999999998888899999998876432        23568999999999999999999876552 333444443  


Q ss_pred             cCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         72 FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        72 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                       .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus        99 -~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~  143 (192)
T 2iep_A           99 -MKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRE  143 (192)
T ss_dssp             -EEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCC
T ss_pred             -eCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccC
Confidence             245555555555678999999999999999999999999988754

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.87  E-value=9.5e-21  Score=104.48  Aligned_cols=116  Identities=26%  Similarity=0.483  Sum_probs=83.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC--------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeec
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD--------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRF   72 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~--------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~   72 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+..        .....|.|.+++..|.|.|.|.+.+..........+.+.+. 
T Consensus        16 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~-   94 (189)
T 2v5t_A           16 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN-   94 (189)
T ss_dssp             TTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEE-
T ss_pred             CCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEec-
Confidence            489999999999888899999998876542        13457999999999999999999987644333333333332 


Q ss_pred             CCCeeeecCC--ccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         73 DPPVIKESFS--DETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        73 ~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+|.+.....  ...+..|+.+.|.|.+.+.|.+.+.|+++|..+..
T Consensus        95 ~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~  141 (189)
T 2v5t_A           95 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE  141 (189)
T ss_dssp             EEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCC
T ss_pred             CCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcC
Confidence            2444443332  34577899999999999889999999999998764

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.86  E-value=2.3e-20  Score=108.72  Aligned_cols=114  Identities=22%  Similarity=0.488  Sum_probs=89.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGR   71 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~   71 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...         ....|.|.+++..|.|.|.|.+.+..+.......+.+.  
T Consensus        19 ~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~--   96 (284)
T 2rik_A           19 LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ--   96 (284)
T ss_dssp             TTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE--
T ss_pred             CCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCceEEEEEEEEcc--
Confidence            4899999999998888899999999876542         23679999999999999999999876554444444443  


Q ss_pred             cCCCeeeecCC-ccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         72 FDPPVIKESFS-DETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        72 ~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                       .+|.+..... ...+..|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus        97 -~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~  142 (284)
T 2rik_A           97 -EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQE  142 (284)
T ss_dssp             -CCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCC
T ss_pred             -CCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcC
Confidence             3555544333 34577999999999999999999999999988754

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.86  E-value=1.3e-20  Score=110.85  Aligned_cols=117  Identities=27%  Similarity=0.484  Sum_probs=86.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC--------C--CCeEEEecCCC-CCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH--------N--EPVFRIDSVRK-EDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------~--~~~l~~~~~~~-~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...        .  ...|.|.+++. .|.|.|.|.+.+..+.......+.+.
T Consensus        20 ~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~   99 (304)
T 2yd9_A           20 SGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVL   99 (304)
T ss_dssp             TTSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEE
T ss_pred             CCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEe
Confidence            4899999999999899999999998776432        1  25689999998 99999999999987665555556554


Q ss_pred             eec----CCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         70 GRF----DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        70 ~~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ...    ..|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus       100 ~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~  151 (304)
T 2yd9_A          100 REDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDP  151 (304)
T ss_dssp             CGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCG
T ss_pred             ccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcC
Confidence            321    115566556556678899999999999999999999999988754

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.86  E-value=1.2e-20  Score=114.18  Aligned_cols=114  Identities=23%  Similarity=0.444  Sum_probs=92.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----------CCCeEEEecCCCCCCeEEEEEEEcCCCCcee-EeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA-SGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~-~~~~~v   68 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...           ....|.|..++..|.|.|.|.+.|..+.... ...+.+
T Consensus       226 ~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  305 (395)
T 1bih_A          226 AGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV  305 (395)
T ss_dssp             TTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEE
T ss_pred             CCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEE
Confidence            3889999999999999999999999876432           1237999999999999999999998766443 555555


Q ss_pred             eeecCCCeeeecCCc-cccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         69 GGRFDPPVIKESFSD-ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        69 ~~~~~~~~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .   .+|.+...+.. ..+..|+.+.|.|.+.+.|.|.+.|+++|..+..
T Consensus       306 ~---~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~  352 (395)
T 1bih_A          306 V---SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG  352 (395)
T ss_dssp             E---EEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCS
T ss_pred             E---cCCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCC
Confidence            4   35666665554 5678999999999999999999999999998754

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.86  E-value=1.2e-20  Score=114.04  Aligned_cols=114  Identities=22%  Similarity=0.345  Sum_probs=90.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCCCC--------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG   64 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~~~--------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~   64 (119)
                      .|+.+.|.|.+.+.|.+.|.|+|+  +..+...              ....|.|.+++.+|.|.|.|.+.|..+......
T Consensus        14 ~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~   93 (389)
T 2jll_A           14 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSM   93 (389)
T ss_dssp             TTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             CCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCCCcceEE
Confidence            389999999999999999999999  6655321              234799999999999999999999877665555


Q ss_pred             eEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         65 ELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        65 ~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+.|.   .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|+++|..+..
T Consensus        94 ~l~V~---~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~  143 (389)
T 2jll_A           94 YLDIE---YAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPA  143 (389)
T ss_dssp             EEEEE---EEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSC
T ss_pred             EEEEE---eCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCc
Confidence            55554   355555544333568899999999999999999999999988764

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.86  E-value=2.6e-20  Score=102.84  Aligned_cols=112  Identities=16%  Similarity=0.236  Sum_probs=84.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCcee--EeeEEEeeecCCCeee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA--SGELKLGGRFDPPVIK   78 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~--~~~~~v~~~~~~~~~~   78 (119)
                      .|+.++|.|.+.+ +.+.+.|+|++.. .......|.|.+++..|.|.|.|.+.+..+....  ...+.+.....+|.+.
T Consensus        21 ~G~~v~L~C~~~~-~~~~~~W~k~g~~-~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~   98 (184)
T 2gi7_A           21 LEKPVTLRCQGPP-GVDLYRLEKLSSS-RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLS   98 (184)
T ss_dssp             TTCCEEEEEECST-TCSEEEEEETTTC-CEESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEE
T ss_pred             CCCcEEEEEeCCC-CCCEEEEEECCcc-ccCcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEE
Confidence            4899999999987 7789999999876 2235678999999999999999999986532222  2344443323456666


Q ss_pred             ecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         79 ESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        79 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      ..+ ...+.+|+.+.|.|.+.+. ++.+.|+++|..+.
T Consensus        99 ~~p-~~~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~~~  134 (184)
T 2gi7_A           99 AQP-GPAVSSGGDVTLQCQTRYG-FDQFALYKEGDPAP  134 (184)
T ss_dssp             EEC-CCSSCCTTCEEEEEECSSC-CCEEEEEECCCCTT
T ss_pred             eCC-CceecCCCcEEEEEEcCCC-CcEEEEEECCCcCc
Confidence            555 4467899999999997654 46999999987654

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.86  E-value=1e-20  Score=107.03  Aligned_cols=114  Identities=21%  Similarity=0.235  Sum_probs=83.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCC--------CCCCC--eEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVP--------DHNEP--VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG   70 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~--------~~~~~--~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~   70 (119)
                      .|+.|+|.|.+.+ +.+.+.|+|++..+.        .....  .|.|.+++.+|.|.|.|.+.+..+....+..+.+.+
T Consensus        22 ~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V  100 (218)
T 1uct_A           22 LDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVV  100 (218)
T ss_dssp             TTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEE
T ss_pred             CCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecCCEEEEE
Confidence            4899999999976 678999999887642        12345  899999999999999999998754333333333333


Q ss_pred             e--cCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         71 R--FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        71 ~--~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      .  ..+|.+...+ ...+.+|+.++|.|...+.+.+.+.|+|+|..+.
T Consensus       101 ~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~  147 (218)
T 1uct_A          101 TGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSL  147 (218)
T ss_dssp             ECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSC
T ss_pred             cCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccc
Confidence            2  3456665444 4467899999999977777778999999987653

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.86  E-value=2.3e-20  Score=105.83  Aligned_cols=117  Identities=18%  Similarity=0.364  Sum_probs=87.5

Q ss_pred             CCccEEEEEEeccCCC-CeeEEeeCCccCC-----------------------------CCCCCeEEEecCCCCCCeEEE
Q psy12725          1 MLALKFFTCKYEGNPV-KTISWMKDGKPVP-----------------------------DHNEPVFRIDSVRKEDKGMYQ   50 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~-~~v~w~~~~~~~~-----------------------------~~~~~~l~~~~~~~~d~g~y~   50 (119)
                      .|+.+.|.|.+.+.+. +.+.|++++....                             ......|.|.+++..|+|.|.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   93 (231)
T 2pet_A           14 RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYV   93 (231)
T ss_dssp             TTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCCGGGCEEEE
T ss_pred             cCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccCcccCceEE
Confidence            4899999999998774 8999997544311                             223345999999999999999


Q ss_pred             EEEEcCC-CCceeEeeEEEeeecCCCeeeecCCccccCCCCcE-EEEeEE-ccCCCCeEEEEECCEEccc
Q psy12725         51 CVIRNEQ-ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNY-YFKCIA-SGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        51 C~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~-~l~C~~-~~~p~~~~~W~~~~~~~~~  117 (119)
                      |.+.+.. +.......+.+......|.+...+....+..|+.+ .|.|.+ .+.|.|.+.|++++..+..
T Consensus        94 C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~  163 (231)
T 2pet_A           94 CVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEV  163 (231)
T ss_dssp             EEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCC
T ss_pred             EEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCcc
Confidence            9999875 44444555555433233555555555567788887 999999 8889999999999998764

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.85  E-value=2e-20  Score=104.72  Aligned_cols=113  Identities=16%  Similarity=0.207  Sum_probs=81.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC-ccCC-----CCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG-KPVP-----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDP   74 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~-~~~~-----~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~   74 (119)
                      .|+.+.|.|.+.|.|.+.+.|++.. ..+.     ......|.|.+++.+|+|.|.|.+.+..+.....+.+.|.  ..+
T Consensus        15 ~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~--~~p   92 (202)
T 1vca_A           15 IGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIY--SFP   92 (202)
T ss_dssp             TTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEE--BCC
T ss_pred             CCCcEEEEEeecCCCCCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEE--eCC
Confidence            4899999999998899999999842 2111     1133569999999999999999999986544334444443  333


Q ss_pred             CeeeecCCccccCCCCcEEEEeEEccCCC---CeEEEEECCEEcc
Q psy12725         75 PVIKESFSDETLNPGPNYYFKCIASGNPT---PEISWYLDGKKLV  116 (119)
Q Consensus        75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~~~W~~~~~~~~  116 (119)
                      ..+...+. ..+.+|+.+.|.|.+.+.++   +.+.|++++..+.
T Consensus        93 ~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~  136 (202)
T 1vca_A           93 KDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMK  136 (202)
T ss_dssp             SCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEE
T ss_pred             CCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECc
Confidence            33333222 56789999999999987643   3699999998764

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.85  E-value=1.6e-20  Score=104.49  Aligned_cols=112  Identities=20%  Similarity=0.265  Sum_probs=83.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC--------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeE--eeEEEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD--------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS--GELKLGG   70 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~--------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~--~~~~v~~   70 (119)
                      .|+.|+|.|.+.+ +.+.+.|+|++..+..        .....|.|.+++.+|.|.|.|.+.+..+....+  ..+.+..
T Consensus        18 ~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~   96 (196)
T 3p2t_A           18 WGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTG   96 (196)
T ss_dssp             TTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEEC
T ss_pred             CCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecC
Confidence            4899999999987 6789999999877642        234679999999999999999999976522223  3444433


Q ss_pred             ecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEc
Q psy12725         71 RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL  115 (119)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~  115 (119)
                      ...+|.+...+.. .+.+|+.++|.|.+.+ +++.+.|+++|..+
T Consensus        97 ~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~  139 (196)
T 3p2t_A           97 AYSKPTLSALPSP-LVTSGKSVTLLCQSRS-PMDTFLLCKERAAH  139 (196)
T ss_dssp             SSCCCEEEEESCS-EECTTCCEEEEEEEEE-EEEEEEEEETTCCC
T ss_pred             CCCCCEEEeCCcc-eecCCCeEEEEEecCC-CCCEEEEEeCCCcc
Confidence            2345666554433 5789999999999877 44589999998754

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.85  E-value=2.6e-20  Score=112.45  Aligned_cols=114  Identities=28%  Similarity=0.555  Sum_probs=93.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC---CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD---HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI   77 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~---~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~   77 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+..   .....|.|.+++.+|.|.|.|.+.+..+.......+.+.   .+|.+
T Consensus       221 ~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~---~~p~~  297 (382)
T 1cs6_A          221 TGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH---AQPDW  297 (382)
T ss_dssp             TTCCEEEECEEEEESCCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE---EEEEE
T ss_pred             CCCeEEEEEEEccCCCCEEEEEECCcccccEEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEe---cCCCc
Confidence            388999999999989999999998876543   346789999999999999999999987665555555553   35666


Q ss_pred             eecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         78 KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        78 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ...+....+..|+.+.|.|.+.+.|.+.+.|+++|..+..
T Consensus       298 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~  337 (382)
T 1cs6_A          298 LDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS  337 (382)
T ss_dssp             EECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCC
T ss_pred             ccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCC
Confidence            6555566778999999999999999999999999998764

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.85  E-value=1.4e-20  Score=113.76  Aligned_cols=114  Identities=25%  Similarity=0.403  Sum_probs=91.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC-----------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD-----------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~-----------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++.....           .....|.|..++..|.|.|.|.+.|..+.......+.+.
T Consensus       226 ~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  305 (388)
T 2v5m_A          226 VAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT  305 (388)
T ss_dssp             TTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             eCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEe
Confidence            388999999999889999999997543211           124689999999999999999999987765555555554


Q ss_pred             eecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         70 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                         .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|+++|..+..
T Consensus       306 ---~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~  350 (388)
T 2v5m_A          306 ---APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH  350 (388)
T ss_dssp             ---EEEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSC
T ss_pred             ---CCCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECcc
Confidence               345555556666788999999999999999999999999998764

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.85  E-value=2.5e-20  Score=113.06  Aligned_cols=114  Identities=24%  Similarity=0.473  Sum_probs=93.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFD   73 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~   73 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...       ....|.|..++..|.|.|.|.+.+..+.......+.+.   .
T Consensus       235 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~---~  311 (403)
T 3laf_A          235 EGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVL---V  311 (403)
T ss_dssp             TTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE---E
T ss_pred             CCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEE---C
Confidence            3889999999999898999999998876532       24679999999999999999999987655555555554   3


Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+..
T Consensus       312 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~  355 (403)
T 3laf_A          312 PPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIP  355 (403)
T ss_dssp             EEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCC
T ss_pred             CCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCC
Confidence            56666666666788999999999999999999999999988753

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.85  E-value=2.2e-20  Score=114.55  Aligned_cols=111  Identities=16%  Similarity=0.278  Sum_probs=85.9

Q ss_pred             CCccEEEEEEecc-CCCCeeEEeeCCccCCCC---------C------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEe
Q psy12725          1 MLALKFFTCKYEG-NPVKTISWMKDGKPVPDH---------N------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASG   64 (119)
Q Consensus         1 ~g~~~~l~c~~~~-~~~~~v~w~~~~~~~~~~---------~------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~   64 (119)
                      .|+.+.|.|.+.+ .|.+.+.|++++..+...         .      ...|.|..++.+|.|.|+|.+.|.   .....
T Consensus       241 ~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~  317 (423)
T 3qs7_E          241 VGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSA  317 (423)
T ss_dssp             TTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEE
T ss_pred             CCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceE
Confidence            4899999999998 567899999998876431         1      136999999999999999999987   33344


Q ss_pred             eEEEeeecCCCeeeecC--CccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         65 ELKLGGRFDPPVIKESF--SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        65 ~~~v~~~~~~~~~~~~~--~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+.|.   .+|.+...+  ....+.+|+.+.|.|.+.+.|.|.+.|+|+|..+..
T Consensus       318 ~L~V~---~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~  369 (423)
T 3qs7_E          318 LVTIV---EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC  369 (423)
T ss_dssp             EEEEE---SSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEEC
T ss_pred             EEEEE---eCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCC
Confidence            44443   355554433  244577899999999999999999999999998854

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.85  E-value=4.6e-20  Score=103.64  Aligned_cols=113  Identities=18%  Similarity=0.265  Sum_probs=83.0

Q ss_pred             CccEEEEEEecc-CCCCeeEEeeCCccCCCCC-----------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          2 LALKFFTCKYEG-NPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         2 g~~~~l~c~~~~-~~~~~v~w~~~~~~~~~~~-----------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      |+.+.|.|.+.. .|.+.|.|++|+..+....           ...|.|.+++.+|+|.|+|.+.|.  .......+.+.
T Consensus        17 g~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng--~a~~~~~~~~~   94 (207)
T 3rbs_A           17 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDG--KATNHSTVVLV   94 (207)
T ss_dssp             GGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEET--TEEEEEEEEEC
T ss_pred             CCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEECC--CeEEEEEEEEE
Confidence            788999999964 5899999999998874321           125899999999999999999983  22222222210


Q ss_pred             e------------------ecCCCeeeecCCccccCCCCcEEEEeEEccC-CCCeEEEEECCEEccc
Q psy12725         70 G------------------RFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISWYLDGKKLVN  117 (119)
Q Consensus        70 ~------------------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~~~~~~~  117 (119)
                      .                  ...+|.+...+ ...+.+|+.+.|.|.+.+. |.|.+.|+|+|..+..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~  160 (207)
T 3rbs_A           95 GDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISV  160 (207)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECC
T ss_pred             ccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCC
Confidence            0                  00245554433 3467789999999999998 8999999999998854

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.85  E-value=3.4e-20  Score=103.31  Aligned_cols=112  Identities=17%  Similarity=0.251  Sum_probs=80.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCC--------CCCCCeEEEecCCCCCCeEEEEEEEcCC-C--CceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVP--------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ-E--SAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~--------~~~~~~l~~~~~~~~d~g~y~C~~~~~~-~--~~~~~~~~~v~   69 (119)
                      .|+.++|.|.+.+.+. .+.|+|++..+.        ......|.|.+++..|.|.|.|.+.+.. +  .......+.+.
T Consensus        18 ~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~   96 (198)
T 1ugn_A           18 QGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVT   96 (198)
T ss_dssp             TTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEE
T ss_pred             CCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEc
Confidence            4899999999988765 699999987662        1246789999999999999999999875 3  22223444443


Q ss_pred             eecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEc
Q psy12725         70 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL  115 (119)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~  115 (119)
                      ....+|.+...+ ...+.+|+.+.|.|.+.+. .+.+.|+++|..+
T Consensus        97 ~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~  140 (198)
T 1ugn_A           97 GAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDE  140 (198)
T ss_dssp             CSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC----
T ss_pred             ccccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCcc
Confidence            322345555443 3467899999999999887 7799999998865

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.85  E-value=7.2e-20  Score=106.90  Aligned_cols=116  Identities=25%  Similarity=0.409  Sum_probs=88.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC--------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeec
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD--------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRF   72 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~--------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~   72 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+..        .....|.|..++..|.|.|.|.+.+..........+.+.+. 
T Consensus       114 ~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~-  192 (291)
T 1qz1_A          114 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVN-  192 (291)
T ss_dssp             TTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEE-
T ss_pred             CCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEe-
Confidence            488999999999989899999999877643        23467999999999999999999986433222333333332 


Q ss_pred             CCCeeeecCC--ccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         73 DPPVIKESFS--DETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        73 ~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+|.+.....  ...+..|+.+.|.|.+.+.|.|.+.|+++|..+..
T Consensus       193 ~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~  239 (291)
T 1qz1_A          193 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN  239 (291)
T ss_dssp             EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCC
T ss_pred             cCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcC
Confidence            2455544322  34578899999999999999999999999998764

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.85  E-value=5.8e-20  Score=104.82  Aligned_cols=116  Identities=27%  Similarity=0.516  Sum_probs=88.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC----------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG   70 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~   70 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...          ....|.|.+++..|.|.|.|.+.+..+.......+.+..
T Consensus        29 ~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~  108 (241)
T 3grw_A           29 AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLE  108 (241)
T ss_dssp             TTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEEEEEEEEec
Confidence            4899999999999888999999998776432          235799999999999999999999766555555555543


Q ss_pred             ec-CCCeeee-cCCccccCCCCcEEEEeEEccCCCCeEEEEE----CCEEcc
Q psy12725         71 RF-DPPVIKE-SFSDETLNPGPNYYFKCIASGNPTPEISWYL----DGKKLV  116 (119)
Q Consensus        71 ~~-~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~----~~~~~~  116 (119)
                      .. .+|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++    ++..+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~  160 (241)
T 3grw_A          109 RSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVG  160 (241)
T ss_dssp             CCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSC
T ss_pred             cCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccC
Confidence            21 1233322 2344567889999999999999999999999    666553

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.84  E-value=2.9e-20  Score=104.12  Aligned_cols=115  Identities=22%  Similarity=0.375  Sum_probs=86.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCC------------CC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVP------------DH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS   63 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~------------~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~   63 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+.            ..     ....|.|.+++..|.|.|.|.+.+..+.....
T Consensus        15 ~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~   94 (212)
T 1f97_A           15 ENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGE   94 (212)
T ss_dssp             TTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEETTSSSEEE
T ss_pred             cCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEEEEEEccCCCcccE
Confidence            48999999999988889999999775520            01     23679999999999999999999976533334


Q ss_pred             eeEEEeeecCCCeeeecCCccccCCCCcEEEEeE-EccCCCCeEEEEECCE-Ecc
Q psy12725         64 GELKLGGRFDPPVIKESFSDETLNPGPNYYFKCI-ASGNPTPEISWYLDGK-KLV  116 (119)
Q Consensus        64 ~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~-~~~~p~~~~~W~~~~~-~~~  116 (119)
                      ..+.+.+. .+|.+...+....+..|+.+.|.|. +.+.|.+.+.|++++. .+.
T Consensus        95 ~~~~l~V~-~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~  148 (212)
T 1f97_A           95 VSIHLTVL-VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLT  148 (212)
T ss_dssp             EEEEEEEE-BCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC
T ss_pred             EEEEEEEE-cCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccc
Confidence            44444443 2444433333456788999999999 7888999999999998 654

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.84  E-value=1.3e-20  Score=104.28  Aligned_cols=110  Identities=16%  Similarity=0.319  Sum_probs=79.7

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEec-CCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCC-----
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDS-VRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP-----   75 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~-~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~-----   75 (119)
                      |+.+.|.|.+.+ + +.+.|+|++..+....+..|.|.+ ++.+|+|.|.|.+.+..+.......+.+.....+.     
T Consensus        14 G~~v~L~C~~~~-~-~~i~W~k~g~~l~~~~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~~~~~~~~~~   91 (186)
T 1jbj_A           14 GTSVELTCPLDS-D-ENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAK   91 (186)
T ss_dssp             TTEEEEECSSCC-C-TTCEEEETTEEECSCCCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCSCCCCCCCCCC
T ss_pred             CcEEEEEEeCCC-C-CceEEEECCEECCCCCCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEeccccccccccc
Confidence            899999999987 4 359999999998765678999999 99999999999999987654333433332211111     


Q ss_pred             ----------eeeecCC----c---cccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         76 ----------VIKESFS----D---ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        76 ----------~~~~~~~----~---~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                                .+.....    .   ..+..|+.+.|.|.+   |.|.+.|+|+|..+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~  146 (186)
T 1jbj_A           92 KDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIIS  146 (186)
T ss_dssp             CCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECC
T ss_pred             ccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECc
Confidence                      0000000    0   123489999999987   788999999999886

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.84  E-value=5.7e-20  Score=103.04  Aligned_cols=116  Identities=18%  Similarity=0.264  Sum_probs=83.2

Q ss_pred             CccEEEEEEeccC-CCCeeEEeeCCccCCCCCC---------CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEee-
Q psy12725          2 LALKFFTCKYEGN-PVKTISWMKDGKPVPDHNE---------PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG-   70 (119)
Q Consensus         2 g~~~~l~c~~~~~-~~~~v~w~~~~~~~~~~~~---------~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~-   70 (119)
                      |+.+.|.|.+.+. |.+.+.|++++..+....+         ..|.|.+++.+|.|.|.|.+.+..+.......+.+.. 
T Consensus        17 ~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~~   96 (212)
T 2r15_A           17 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAY   96 (212)
T ss_dssp             SSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHH
T ss_pred             CceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEeec
Confidence            4566777777764 5789999999987754321         3489999999999999999999765443333332210 


Q ss_pred             -----------------ecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         71 -----------------RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        71 -----------------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                                       ...++.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~  160 (212)
T 2r15_A           97 DEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQ  160 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECC
T ss_pred             cchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECcc
Confidence                             00223333334445678999999999999999999999999988764

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.84  E-value=6.1e-20  Score=107.86  Aligned_cols=114  Identities=25%  Similarity=0.392  Sum_probs=87.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------C--CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------E--PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~--~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....         .  ..|.|.+++..|.|.|.|.+.+..+.......+.+.
T Consensus        18 ~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~   97 (305)
T 2nzi_A           18 YQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE   97 (305)
T ss_dssp             TTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCccceEEEEEe
Confidence            48999999999998999999999988765321         1  279999999999999999999986655445555553


Q ss_pred             eecCCCeee-----ecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         70 GRFDPPVIK-----ESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        70 ~~~~~~~~~-----~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .   +|.+.     ..+....+..|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus        98 ~---~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~  147 (305)
T 2nzi_A           98 V---PAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDN  147 (305)
T ss_dssp             E---EEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCS
T ss_pred             c---CCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCC
Confidence            2   22222     112334567899999999999999999999999877653

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.84  E-value=3.9e-20  Score=103.94  Aligned_cols=117  Identities=15%  Similarity=0.265  Sum_probs=84.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC---------------------CCCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP---------------------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~---------------------~~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.|.|.|.+.+.+.+.+.|+|.  +....                     ......|.|.+++.+|+|.|.|.+.+..
T Consensus        14 ~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   93 (213)
T 3mj8_L           14 LGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQSWDGT   93 (213)
T ss_dssp             TTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEEeccCC
Confidence            489999999999888899999982  21110                     0123469999999999999999999876


Q ss_pred             C---CceeEeeEEEeee-cCCCeeeecCCccccCCCCcEEEEeEEccC-CC-CeEEEEECCEEccc
Q psy12725         58 E---SAQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGN-PT-PEISWYLDGKKLVN  117 (119)
Q Consensus        58 ~---~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~~  117 (119)
                      +   .......+.+... ..+|.+...+....+..|+.+.|.|.+.+. |+ +.+.|+++|..+..
T Consensus        94 ~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  159 (213)
T 3mj8_L           94 NSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQ  159 (213)
T ss_dssp             TTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             cceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCC
Confidence            5   2233344444321 146666665555555589999999999886 43 38999999998753

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.84  E-value=3.2e-19  Score=99.74  Aligned_cols=114  Identities=12%  Similarity=0.229  Sum_probs=82.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC-------------------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD-------------------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~-------------------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.+.|.|...+.+.+.+.|++++.....                         ..+..|.|.+++..|.|.|.|.+.+
T Consensus        13 ~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~~   92 (208)
T 3r4d_A           13 EDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTD   92 (208)
T ss_dssp             TTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEEEEEEC
T ss_pred             cCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEEEEEEc
Confidence            489999999987778889999987432110                         1235799999999999999999998


Q ss_pred             CCC-CceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         56 EQE-SAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        56 ~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ... .......+.+......|.+......  +..|+.+.|.|.+.+.| +.+.|++++..+..
T Consensus        93 ~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~  152 (208)
T 3r4d_A           93 ENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQL  152 (208)
T ss_dssp             SSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCC
T ss_pred             ccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCC
Confidence            742 2333344444332233555443333  88999999999998865 79999999988763

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.84  E-value=1.9e-19  Score=105.16  Aligned_cols=114  Identities=23%  Similarity=0.532  Sum_probs=88.8

Q ss_pred             CCccEEEEEEeccCC-CCeeEEee-CCccCCCC-----------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          1 MLALKFFTCKYEGNP-VKTISWMK-DGKPVPDH-----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~-~~~v~w~~-~~~~~~~~-----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      .|+.+.|.|.+.+.+ .+.+.|++ ++..+...           ....|.|.+++..|.|.|.|.+.+..+. .....+.
T Consensus        16 ~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~-~~~~~~~   94 (291)
T 1qz1_A           16 VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGT-QSEATVN   94 (291)
T ss_dssp             TTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSC-EEEEEEE
T ss_pred             CCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCC-eeEEEEE
Confidence            489999999999876 68999999 77666432           2357899999999999999999998643 2233344


Q ss_pred             EeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         68 LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        68 v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      +.+ ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus        95 l~v-~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~  142 (291)
T 1qz1_A           95 VKI-FQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVI  142 (291)
T ss_dssp             EEE-ECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSS
T ss_pred             EEe-eccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcc
Confidence            433 246666666666678899999999999999989999999987654

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.84  E-value=2e-19  Score=100.77  Aligned_cols=109  Identities=13%  Similarity=0.237  Sum_probs=82.5

Q ss_pred             CCccEEEEEEeccCCCCe-eEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCeeee
Q psy12725          1 MLALKFFTCKYEGNPVKT-ISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKE   79 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~-v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~   79 (119)
                      .|+.+.|.|.+.+.+.+. +.|++++..+.. ....|.|.+++.+|.|.|.|.+.+..  ......+.+.   .+|.+..
T Consensus        21 ~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~-~~~~L~i~~v~~~D~G~Y~C~a~n~~--~s~~~~l~V~---~~p~~~~   94 (204)
T 3sgj_C           21 EKDSVTLKCQGAYSPEDQSTQWFHNESLISS-QASSYFIDAATVDDSGEYRCQTQLST--LSDPVQLEVH---IGWLLLQ   94 (204)
T ss_dssp             TTCCEEEEEECCSSSSCCCEEEEETTEEESC-CSSEEEESSCCGGGCEEEEEEETTSB--CCCCEEEEEE---CSSEEEE
T ss_pred             CCCCEEEEEcCCCCCCCcEEEEEECCEEccc-CccEEEEecccccCCEEEEEEeCCCc--ccccEEEEEe---cCceEec
Confidence            489999999999887665 999999988754 34899999999999999999998742  2223333332   3444443


Q ss_pred             cCCccccCCCCcEEEEeEEccC-CCCeEEEEECCEEcc
Q psy12725         80 SFSDETLNPGPNYYFKCIASGN-PTPEISWYLDGKKLV  116 (119)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~~~~~~  116 (119)
                      .+ ...+.+|+.+.|.|.+.+. |.+.+.|+++|..+.
T Consensus        95 ~~-~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~  131 (204)
T 3sgj_C           95 AP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRK  131 (204)
T ss_dssp             CS-CSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEE
T ss_pred             CC-ceeEeCCCcEEEEEEecCCCCCceEEEEECCcEee
Confidence            33 3567789999999999665 557899999998764

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.84  E-value=4.2e-20  Score=104.64  Aligned_cols=115  Identities=28%  Similarity=0.509  Sum_probs=86.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC----------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG   70 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~   70 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...          ....|.|.+++..|.|.|.|.+.+..+.......+.+..
T Consensus        33 ~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~  112 (231)
T 3ojm_B           33 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVE  112 (231)
T ss_dssp             TTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             cCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccEEEEEEc
Confidence            4899999999998888899999998876432          124799999999999999999998866554455555543


Q ss_pred             ec-CCCeeee-cCCccccCCCCcEEEEeEEccCCCCeEEEEE----CCEEc
Q psy12725         71 RF-DPPVIKE-SFSDETLNPGPNYYFKCIASGNPTPEISWYL----DGKKL  115 (119)
Q Consensus        71 ~~-~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~----~~~~~  115 (119)
                      .. .+|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++    +|..+
T Consensus       113 ~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~  163 (231)
T 3ojm_B          113 RSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKY  163 (231)
T ss_dssp             CCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSB
T ss_pred             CCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccc
Confidence            21 1222222 2334567789999999999999999999999    66544

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.84  E-value=1.5e-19  Score=107.35  Aligned_cols=115  Identities=21%  Similarity=0.448  Sum_probs=84.4

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeCCccCCC-----------------------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKDGKPVPD-----------------------HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~~~~~~~-----------------------~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.+.|.|.+.+. |.+.|.|+|++.....                       .....|.|.+++.+|+|.|.|.+.+.
T Consensus        17 ~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   96 (327)
T 2wng_A           17 AGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFRK   96 (327)
T ss_dssp             TTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEEEEEEES
T ss_pred             cCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEEEEEeecC
Confidence            48999999999887 7889999998754210                       23457999999999999999999987


Q ss_pred             CCCce-----eEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCC--eEEEEECCEEccc
Q psy12725         57 QESAQ-----ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP--EISWYLDGKKLVN  117 (119)
Q Consensus        57 ~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~  117 (119)
                      .+...     ....+.|.....+|.+.  .....+.+|+.+.|.|.+.+.|++  .+.|+++|..+..
T Consensus        97 ~~~~~~~~~~~~~~l~V~~~p~~p~i~--~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~  162 (327)
T 2wng_A           97 GSPDTEFKSGAGTELSVRAKPSAPVVS--GPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSD  162 (327)
T ss_dssp             STTCEEEEECCCEEEEEEBCCCCCEEE--CCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCC
T ss_pred             CCcceeEeecCcEEEEEEecCCCceee--ccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccc
Confidence            54311     12344444322334443  223567889999999999888765  8999999988763

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.84  E-value=1.3e-19  Score=105.78  Aligned_cols=116  Identities=26%  Similarity=0.483  Sum_probs=86.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC--------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeec
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD--------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRF   72 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~--------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~   72 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+..        .....|.|.+++..|.|.|.|.+.+..+.......+.+.+. 
T Consensus       112 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~-  190 (291)
T 2wim_A          112 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN-  190 (291)
T ss_dssp             TTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEE-
T ss_pred             CCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEec-
Confidence            488999999999989899999998876542        13457999999999999999999987644333334444433 


Q ss_pred             CCCeeeecCC--ccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         73 DPPVIKESFS--DETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        73 ~~~~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+|.+.....  ...+.+|+.+.|.|.+.+.|.|.+.|+++|..+..
T Consensus       191 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~  237 (291)
T 2wim_A          191 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEE  237 (291)
T ss_dssp             BCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCC
T ss_pred             cCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcC
Confidence            3455544332  34577899999999999999999999999998764

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.84  E-value=1.4e-19  Score=118.00  Aligned_cols=116  Identities=65%  Similarity=1.212  Sum_probs=97.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCeeeec
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKES   80 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   80 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+.. ....|.|.+++..|.|.|.|.+.+..+.......+.+.....+|.+...
T Consensus       357 ~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~  435 (816)
T 3dmk_A          357 FGRPAVFTCQYTGNPIKTVSWMKDGKAIGH-SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQA  435 (816)
T ss_dssp             TTSCEEEEEEEEEECCCEEEEEETTEECSC-CSSEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSSCCCEEEEE
T ss_pred             CCCCEEEEEEEeccCCCEEEEEECCEECCC-CCCEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccccCCCceEec
Confidence            388999999999889999999999988753 4678999999999999999999998765555555665443457777776


Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      +....+.+|+.+.|.|.+.+.|.+.+.|+++|..+..
T Consensus       436 ~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~  472 (816)
T 3dmk_A          436 FQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN  472 (816)
T ss_dssp             CCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCS
T ss_pred             CcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCC
Confidence            6666788999999999999999999999999988754

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.83  E-value=2.4e-19  Score=105.81  Aligned_cols=117  Identities=18%  Similarity=0.319  Sum_probs=89.2

Q ss_pred             CCccEEEEEEe------ccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEE-cCCCCcee-EeeE
Q psy12725          1 MLALKFFTCKY------EGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIR-NEQESAQA-SGEL   66 (119)
Q Consensus         1 ~g~~~~l~c~~------~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~-~~~~~~~~-~~~~   66 (119)
                      .|+.+.|.|.+      .+.|.+.+.|++++..+...      ....|.|.+++..|.|.|.|.+. +..+.... ...+
T Consensus       117 ~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~  196 (315)
T 1itb_B          117 VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI  196 (315)
T ss_dssp             TTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEE
T ss_pred             cCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEE
Confidence            38899999998      78888999999999887432      34689999999999999999999 66554321 2222


Q ss_pred             EEeee----cCCCeeeecCCc-cccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         67 KLGGR----FDPPVIKESFSD-ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        67 ~v~~~----~~~~~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+.+.    ..+|.+...+.. ..+..|+.+.|.|.+.+.|.|.+.|+++|..+..
T Consensus       197 ~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~  252 (315)
T 1itb_B          197 EFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDE  252 (315)
T ss_dssp             EEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCT
T ss_pred             EEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCc
Confidence            22221    245666554443 3678999999999999999999999999998764

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.83  E-value=8.9e-20  Score=102.46  Aligned_cols=117  Identities=17%  Similarity=0.267  Sum_probs=82.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCc--cC----------C----C-------CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGK--PV----------P----D-------HNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~--~~----------~----~-------~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.+.|.|.+.+.+.+.+.|+|++.  .+          .    .       .....|.|.+++.+|+|.|.|.+.+..
T Consensus        15 ~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   94 (213)
T 3d9a_L           15 PGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSW   94 (213)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             CCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEEEeeecCC
Confidence            48999999999988888999998532  11          0    0       012379999999999999999999875


Q ss_pred             CCce-eEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEcc-CCCC-eEEEEECCEEccc
Q psy12725         58 ESAQ-ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTP-EISWYLDGKKLVN  117 (119)
Q Consensus        58 ~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~  117 (119)
                      +... ....+.+.....+|.+...+.......|+.+.|.|.+.+ .|.+ .+.|+++|..+..
T Consensus        95 ~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~  157 (213)
T 3d9a_L           95 PYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQN  157 (213)
T ss_dssp             SCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             cceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcc
Confidence            4322 223455543223666665444333447889999999977 5555 7999999998754

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.83  E-value=2e-20  Score=104.58  Aligned_cols=116  Identities=22%  Similarity=0.371  Sum_probs=86.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccC------------CCC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPV------------PDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS   63 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~------------~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~   63 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+            ...     ....|.|.+++..|.|.|.|.+.+..+.....
T Consensus        18 ~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~   97 (209)
T 1nbq_A           18 ENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGE   97 (209)
T ss_dssp             TTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETTSSCEEC
T ss_pred             cCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEEEEEEecCCCCccce
Confidence            4899999999998888999999976552            111     12679999999999999999999875533333


Q ss_pred             eeEEEeeecCCCeeeecCCccccCCCCcEEEEeEE-ccCCCCeEEEEECCEEccc
Q psy12725         64 GELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        64 ~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~  117 (119)
                      ..+.+.+. .+|.+........+..|+.+.|.|.+ .+.|.+.+.|++++..+..
T Consensus        98 ~~~~l~V~-~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~  151 (209)
T 1nbq_A           98 VKVKLIVL-VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPT  151 (209)
T ss_dssp             CEEECCEE-BCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCS
T ss_pred             EEEEEEEe-cCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCC
Confidence            33444332 24444433444457889999999996 8889999999999987654

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.83  E-value=1.4e-19  Score=101.59  Aligned_cols=117  Identities=15%  Similarity=0.238  Sum_probs=82.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccC------------CCC---------CCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPV------------PDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~------------~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.+.|.|.+.+.+.+.+.||++.  ..+            ...         ....|.|.+++.+|.|.|.|.+.+..
T Consensus        14 ~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   93 (210)
T 1lk3_L           14 PGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQQSWNG   93 (210)
T ss_dssp             TTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             CCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEEEEEEcCC
Confidence            4899999999998888899999842  211            000         12379999999999999999999875


Q ss_pred             CCce-eEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725         58 ESAQ-ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLVN  117 (119)
Q Consensus        58 ~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~  117 (119)
                      +... ....+.+.....+|.+...+.......|+.+.|.|.+.+. |.+ .+.|+++|..+..
T Consensus        94 ~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~  156 (210)
T 1lk3_L           94 PLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRD  156 (210)
T ss_dssp             SCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCT
T ss_pred             CceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCC
Confidence            4321 2234555332235666654443334478999999999874 444 8999999998754

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.83  E-value=3e-19  Score=97.77  Aligned_cols=109  Identities=13%  Similarity=0.233  Sum_probs=82.3

Q ss_pred             CCccEEEEEEeccCCCCe-eEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCeeee
Q psy12725          1 MLALKFFTCKYEGNPVKT-ISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKE   79 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~-v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~   79 (119)
                      .|+.+.|.|.+.+.+.+. +.|++++..+.. ....|.|.+++..|.|.|.|.+.+...  .....+.+.   .++....
T Consensus        21 ~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~n~~~--s~~~~l~V~---~~~~~~~   94 (175)
T 1fnl_A           21 EKDSVTLKCQGAYSPEDNSTQWFHNESLISS-QASSYFIDAATVNDSGEYRCQTNLSTL--SDPVQLEVH---IGWLLLQ   94 (175)
T ss_dssp             TTCCEEEEEECCCBTTBCCCEEEETTEEEES-SCSEEEESSCCGGGCEEEEEECSSSCC--CCCEEEEEE---CSSEEEE
T ss_pred             CCCcEEEEeeCCCCCCCcceEEEECCEEccC-CceEEEEeCCCcccCEEEEEEeeCCcc--cccEEEEEe---CCCceee
Confidence            489999999998887665 889999987753 567999999999999999999987543  223333332   2333222


Q ss_pred             cCCccccCCCCcEEEEeEEccCCCC-eEEEEECCEEcc
Q psy12725         80 SFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLV  116 (119)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~  116 (119)
                       .....+.+|+.+.|.|.+.+.+++ .+.|+++|..+.
T Consensus        95 -~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~  131 (175)
T 1fnl_A           95 -APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK  131 (175)
T ss_dssp             -CSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEE
T ss_pred             -CCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEcc
Confidence             233457789999999999887655 999999998764

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.83  E-value=1.8e-19  Score=100.61  Aligned_cols=113  Identities=12%  Similarity=0.197  Sum_probs=82.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC----------CCCCeEEEecCCCCCCeEEEEEEEcCCC-----CceeEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD----------HNEPVFRIDSVRKEDKGMYQCVIRNEQE-----SAQASGE   65 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~----------~~~~~l~~~~~~~~d~g~y~C~~~~~~~-----~~~~~~~   65 (119)
                      .|+.|+|.|.+.+ +.+.+.|+|++..+..          .....|.|.+++..|.|.|.|.+.+...     .......
T Consensus        21 ~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~   99 (201)
T 1nkr_A           21 SEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLD   99 (201)
T ss_dssp             TTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEE
T ss_pred             CCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEE
Confidence            4899999999974 7789999999876531          1246789999999999999999986421     1122334


Q ss_pred             EEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         66 LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        66 ~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      +.+.....+|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+|+|..+.
T Consensus       100 l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~  148 (201)
T 1nkr_A          100 IVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHE  148 (201)
T ss_dssp             EEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSC
T ss_pred             EEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccC
Confidence            44443334566665544 46789999999999876 567899999987553

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.83  E-value=1e-19  Score=102.45  Aligned_cols=114  Identities=27%  Similarity=0.513  Sum_probs=85.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeE----EEecCCCCCCeEEEEEEEcCCCCce-eEeeE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVF----RIDSVRKEDKGMYQCVIRNEQESAQ-ASGEL   66 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l----~~~~~~~~d~g~y~C~~~~~~~~~~-~~~~~   66 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...         ....+    .|.+++..|.|.|.|.+.+..+... ....+
T Consensus        23 ~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l  102 (217)
T 2vr9_A           23 KNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASL  102 (217)
T ss_dssp             TTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETTEEEECCCEEE
T ss_pred             CCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEEEecCCCccccccceE
Confidence            4899999999998888999999998876432         11222    4667889999999999998754331 13344


Q ss_pred             EEeeecCCCeeeecCCccccCCCCcEEEEeEE-ccCCCCeEEEEECCEEcc
Q psy12725         67 KLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        67 ~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~  116 (119)
                      .+..  .+|.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++..+.
T Consensus       103 ~v~~--~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~  151 (217)
T 2vr9_A          103 QIAV--LRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLD  151 (217)
T ss_dssp             EECE--ECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEEC
T ss_pred             EEEE--eCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCC
Confidence            4432  34555555555667899999999998 888999999999998876

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.83  E-value=9.6e-20  Score=100.01  Aligned_cols=109  Identities=13%  Similarity=0.217  Sum_probs=77.3

Q ss_pred             CCccEEEEEEecc--CCCCeeEEeeCCccCC----------C------CCCCeEEEecCCCCCCeEEEEEEEcCCCCc--
Q psy12725          1 MLALKFFTCKYEG--NPVKTISWMKDGKPVP----------D------HNEPVFRIDSVRKEDKGMYQCVIRNEQESA--   60 (119)
Q Consensus         1 ~g~~~~l~c~~~~--~~~~~v~w~~~~~~~~----------~------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~--   60 (119)
                      +|+.|.|.|....  .+.+.|.|+|++..+.          .      ....+|.|.+++.+|+|.|.|.+.+..+..  
T Consensus        10 ~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g~~~~   89 (176)
T 1hng_A           10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRIL   89 (176)
T ss_dssp             TTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEEE
T ss_pred             cCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCCCEEE
Confidence            4899999994322  3566899999885321          1      124569999999999999999999987665  


Q ss_pred             eeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         61 QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        61 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .....+.+......|.+..        .+..+.|.|.+.+.|.|.+.|+++|..+..
T Consensus        90 ~~~~~l~V~~~~~~p~i~~--------~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~  138 (176)
T 1hng_A           90 NKALDLRILEMVSKPMIYW--------ECSNATLTCEVLEGTDVELKLYQGKEHLRS  138 (176)
T ss_dssp             EEEEEEEEECCCCCCEEEE--------ETTTTEEEEECSSCSSCEEEEEETTEEEEE
T ss_pred             EEEEEEEEeCCCCCCEEEe--------cCCcEEEEEEecCCCCcEEEEEECCEECCC
Confidence            3334444433222233332        234589999999999999999999988754

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.82  E-value=1.5e-19  Score=100.82  Aligned_cols=111  Identities=17%  Similarity=0.254  Sum_probs=79.2

Q ss_pred             CCccEEEEEEeccCCC-----CeeEEee-CCccCCCC------------CCCeEEEecCCCCCCeEEEEEEEcCCCCcee
Q psy12725          1 MLALKFFTCKYEGNPV-----KTISWMK-DGKPVPDH------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA   62 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~-----~~v~w~~-~~~~~~~~------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~   62 (119)
                      .|+.+.|.|.+.+.+.     +.+.|+| ++......            ....|.|.+++.+|+|.|.|.+.+..+....
T Consensus        16 ~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~   95 (202)
T 3bp6_B           16 VGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYK   95 (202)
T ss_dssp             TTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeCCCcceE
Confidence            4899999999988765     7899999 43322111            2367999999999999999999987654444


Q ss_pred             EeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEc
Q psy12725         63 SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL  115 (119)
Q Consensus        63 ~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~  115 (119)
                      ...+.+......|.+..    ....+|+.+.|.|.+.|.|.|.+.|++++..+
T Consensus        96 ~~~l~V~~~~~~p~~~~----~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~  144 (202)
T 3bp6_B           96 YLTVKVKASYMRIDTRI----LEVPGTGEVQLTCQARGYPLAEVSWQNVSVPA  144 (202)
T ss_dssp             EEEEEEEBCCCCEEEEE----EECTTTCCEEEEEEEEEBSCCEEEETTCCSCC
T ss_pred             EEEEEecCCCCcccEEE----EecCCCCeEEEEEEccccCCceEEEEeCCCCc
Confidence            45555543222233322    13467999999999999999999999877543

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.82  E-value=2.1e-19  Score=100.70  Aligned_cols=115  Identities=29%  Similarity=0.462  Sum_probs=83.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----------CCCeEE-----EecCCCCCCeEEEEEEEcCCCCc-eeE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----------NEPVFR-----IDSVRKEDKGMYQCVIRNEQESA-QAS   63 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----------~~~~l~-----~~~~~~~d~g~y~C~~~~~~~~~-~~~   63 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...           ....+.     +.+++..|.|.|.|.+.+..+.. ...
T Consensus        23 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~  102 (212)
T 2v9r_A           23 KGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHD  102 (212)
T ss_dssp             TTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETTEEEECCC
T ss_pred             CCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCCCceeecc
Confidence            3899999999988888899999998776432           122233     34458899999999999875432 223


Q ss_pred             eeEEEeeecCCCeeeecCCccccCCCCcEEEEeEE-ccCCCCeEEEEECCEEccc
Q psy12725         64 GELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        64 ~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~  117 (119)
                      ..+.+..  .++.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++..+..
T Consensus       103 ~~l~V~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~  155 (212)
T 2v9r_A          103 ASLEVAI--LRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDD  155 (212)
T ss_dssp             EEEEECE--ECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECT
T ss_pred             eEEEEEe--ccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCC
Confidence            3444432  34444444555567899999999998 8889999999999988764

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.82  E-value=6e-19  Score=98.94  Aligned_cols=111  Identities=20%  Similarity=0.284  Sum_probs=82.1

Q ss_pred             CCccEEEEEEeccCCCC--eeEEeeCCccCC----CCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCC
Q psy12725          1 MLALKFFTCKYEGNPVK--TISWMKDGKPVP----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDP   74 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~--~v~w~~~~~~~~----~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~   74 (119)
                      .|+++.|.|.+ +.|.+  .|.|++.+..+.    ......|.|.+++.+|+|.|.|.+.+..+.....+.+.|.  ..|
T Consensus        21 ~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV~--~~P   97 (210)
T 1gsm_A           21 LGASRQLTCRL-ACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVY--AFP   97 (210)
T ss_dssp             TTCCEEEEEEE-CCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE--BCC
T ss_pred             CCCCEEEEEEC-CCCCCCcceEEeecccccCcEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEEE--ecC
Confidence            48999999999 77777  999998654442    1235679999999999999999999976555445555553  233


Q ss_pred             CeeeecCCccccCCCCcEEEEeEEccC-CC----CeEEEEECCEEccc
Q psy12725         75 PVIKESFSDETLNPGPNYYFKCIASGN-PT----PEISWYLDGKKLVN  117 (119)
Q Consensus        75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~----~~~~W~~~~~~~~~  117 (119)
                      ..+...+.  ....|+.. |.|.+.+. |.    +.+.|+|++..|..
T Consensus        98 ~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~  142 (210)
T 1gsm_A           98 NQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEG  142 (210)
T ss_dssp             SEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTT
T ss_pred             CCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEccc
Confidence            33333332  56778888 99999876 63    37999999999854

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.82  E-value=1.5e-19  Score=101.57  Aligned_cols=117  Identities=14%  Similarity=0.204  Sum_probs=83.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCc--cCC------------C---------CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGK--PVP------------D---------HNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~--~~~------------~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.+.|.|.+.+.+.+.+.|||...  ...            .         .....|.|.+++.+|+|.|.|.+.+..
T Consensus        15 ~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   94 (213)
T 3r06_A           15 LGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYYCQQYYNY   94 (213)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSS
T ss_pred             CCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEEEecccCC
Confidence            48999999999988888999998321  100            0         022379999999999999999998764


Q ss_pred             CC-ceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCC--CeEEEEECCEEccc
Q psy12725         58 ES-AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT--PEISWYLDGKKLVN  117 (119)
Q Consensus        58 ~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~~~~~~  117 (119)
                      +. ......+.+.....+|.+...+.......|+.+.|.|.+.+.++  +.+.|+++|..+..
T Consensus        95 ~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  157 (213)
T 3r06_A           95 PWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRD  157 (213)
T ss_dssp             SCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             ceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCC
Confidence            32 22233445433234677766555555557888999999987654  38999999998754

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.82  E-value=1.3e-19  Score=101.10  Aligned_cols=112  Identities=26%  Similarity=0.429  Sum_probs=80.4

Q ss_pred             CCccEEEEEEecc----CCCCeeEEeeCCccCC--------------------CCCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEG----NPVKTISWMKDGKPVP--------------------DHNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~----~~~~~v~w~~~~~~~~--------------------~~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      +|+.|.|.|.+.+    .+.+.+.|++++..+.                    ......|.|.+++.+|+|.|.|.+.+.
T Consensus         8 ~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   87 (201)
T 1dr9_A            8 VKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKY   87 (201)
T ss_dssp             TTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEEEEEC
T ss_pred             eCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEEEEEcC
Confidence            4899999999853    3567899999886541                    224578999999999999999999997


Q ss_pred             CCCce-----eEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEc-cCCCCeEEEEECCEEcc
Q psy12725         57 QESAQ-----ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKLV  116 (119)
Q Consensus        57 ~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~~  116 (119)
                      .+...     ....+.+......|.+...    ....|+.+.|.|.+. +.|.|.+.|+++|..+.
T Consensus        88 ~g~~~~~~~~~~~~l~V~~~~~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~  149 (201)
T 1dr9_A           88 EKDAFKREHLAEVTLSVKADFPTPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLENGEELN  149 (201)
T ss_dssp             CTTSCEEEEEEEEEEEEECCCCCCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEESSCEEC
T ss_pred             CCCccccccccEEEEEEcCCCCCCceEec----cCCCCCeEEEEEecCCccCCCEEEEEECCEECc
Confidence            54432     2334444322222433332    124588899999994 88999999999998775

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.82  E-value=9.9e-20  Score=101.18  Aligned_cols=116  Identities=24%  Similarity=0.306  Sum_probs=85.8

Q ss_pred             CCccEEEEEE-eccCCC-CeeEEeeCCccCCC---------CCCCeEEEecCCCCCCeEEEEEEEcCCCCcee-EeeEEE
Q psy12725          1 MLALKFFTCK-YEGNPV-KTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA-SGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~-~~~~~~-~~v~w~~~~~~~~~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~-~~~~~v   68 (119)
                      .|+.+.|.|. ..+.|. +.+.|++++..+..         .....|.|.+++.+|.|.|.|.+.+..+.... ...+.+
T Consensus        22 ~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~  101 (201)
T 3s97_C           22 EGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPL  101 (201)
T ss_dssp             TTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEECCCEEE
T ss_pred             CCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcchhhcccce
Confidence            4899999999 777787 89999999876632         23567999999999999999999986533322 112222


Q ss_pred             eee------cCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         69 GGR------FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        69 ~~~------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      .+.      ..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus       102 ~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~  155 (201)
T 3s97_C          102 IPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMP  155 (201)
T ss_dssp             EEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCC
T ss_pred             eeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCC
Confidence            111      113444444445567889999999999999999999999988665

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.82  E-value=7.1e-19  Score=104.62  Aligned_cols=115  Identities=14%  Similarity=0.100  Sum_probs=85.3

Q ss_pred             CCccEEEEEEeccCC-CCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcC--CCCceeE--eeEEEe
Q psy12725          1 MLALKFFTCKYEGNP-VKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNE--QESAQAS--GELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~-~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~--~~~~~~~--~~~~v~   69 (119)
                      .|+.+.|.|.+.+.| .+.+.|++++..+...      .+..|.|.+++.+|.|.|+|.+.|.  .+.....  ..+.+.
T Consensus       142 ~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~  221 (329)
T 3oq3_B          142 DKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILT  221 (329)
T ss_dssp             TTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEE
T ss_pred             CCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEE
Confidence            388999999999988 8999999999877421      2478999999999999999999986  4333322  223333


Q ss_pred             eecCC--CeeeecCCccccCCCCcEEEEeEEccCC---CC-eEEEEECCEEc
Q psy12725         70 GRFDP--PVIKESFSDETLNPGPNYYFKCIASGNP---TP-EISWYLDGKKL  115 (119)
Q Consensus        70 ~~~~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~p---~~-~~~W~~~~~~~  115 (119)
                      +...+  ......+....+..|+.+.|.|.+.+.|   .+ .+.|+++|..+
T Consensus       222 V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i  273 (329)
T 3oq3_B          222 VIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWI  273 (329)
T ss_dssp             EECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCB
T ss_pred             EECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeee
Confidence            32222  0111244456688999999999999987   67 78999998764

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.82  E-value=2.2e-19  Score=98.33  Aligned_cols=109  Identities=19%  Similarity=0.297  Sum_probs=80.6

Q ss_pred             CCccEEEEEEeccCCCC-eeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCeeee
Q psy12725          1 MLALKFFTCKYEGNPVK-TISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKE   79 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~-~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~   79 (119)
                      .|+.+.|.|.+.+.+.+ .+.|++++..+.. ....|.|.+++..|.|.|.|.+.+....  ....+.+.   .++....
T Consensus        18 ~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~~~s--~~~~l~V~---~~~~~~~   91 (176)
T 1f2q_A           18 KGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-TNSSLNIVNAKFEDSGEYKCQHQQVNES--EPVYLEVF---SDWLLLQ   91 (176)
T ss_dssp             TTCCEEEECCTTCC----CCEEEETTEECSC-CSSEEEECSCCGGGCEEEEEECTTSSCC--CCEEEEEE---CSSEEEE
T ss_pred             cCCcEEEEEeCCCCCCcceEEEEECCeECCC-CceEEEEeccceecCEEEEEEcCCcccc--ccEEEEEe---Ccceeec
Confidence            48999999999887764 6999999988753 5789999999999999999999875432  23333332   2333332


Q ss_pred             cCCccccCCCCcEEEEeEEc-cCCCCeEEEEECCEEcc
Q psy12725         80 SFSDETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKLV  116 (119)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~~  116 (119)
                       .....+.+|+.+.|.|.+. +.|.+.+.|+++|..+.
T Consensus        92 -~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~  128 (176)
T 1f2q_A           92 -ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK  128 (176)
T ss_dssp             -ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECC
T ss_pred             -CCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEe
Confidence             2334577999999999994 55667999999998874

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.82  E-value=2.3e-19  Score=102.75  Aligned_cols=116  Identities=20%  Similarity=0.342  Sum_probs=83.7

Q ss_pred             CCccEEEEEEecc---CCCCeeEEeeCCccC-----------------------------C-C--------CCCCeEEEe
Q psy12725          1 MLALKFFTCKYEG---NPVKTISWMKDGKPV-----------------------------P-D--------HNEPVFRID   39 (119)
Q Consensus         1 ~g~~~~l~c~~~~---~~~~~v~w~~~~~~~-----------------------------~-~--------~~~~~l~~~   39 (119)
                      .|+.+.|.|.+.+   .+.+.+.|++++...                             . .        .....|.|.
T Consensus        16 ~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~   95 (250)
T 2fbo_J           16 AGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLT   95 (250)
T ss_dssp             TTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTTSCCEEEC
T ss_pred             cCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCCcceEEEe
Confidence            4899999999986   678899999976432                             0 0        013589999


Q ss_pred             cCCCCCCeEEEEEEEcCCCCce-----eEeeEEEeeecCCCeeeecC-CccccCCCCcEEEEeEEccCCCCeEEEEECCE
Q psy12725         40 SVRKEDKGMYQCVIRNEQESAQ-----ASGELKLGGRFDPPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISWYLDGK  113 (119)
Q Consensus        40 ~~~~~d~g~y~C~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~  113 (119)
                      +++.+|.|.|.|.+.+..+...     ....+.+.....++.+.... ....+.+|+.+.|.|.+.+.|.|.+.|++++.
T Consensus        96 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~  175 (250)
T 2fbo_J           96 HVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPT  175 (250)
T ss_dssp             SCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEEEEEEEEE
T ss_pred             eCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCeeEEEeCCC
Confidence            9999999999999998765332     23444443211234444332 33456789999999999999989999999987


Q ss_pred             Ecc
Q psy12725        114 KLV  116 (119)
Q Consensus       114 ~~~  116 (119)
                      .+.
T Consensus       176 ~~~  178 (250)
T 2fbo_J          176 FFE  178 (250)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            654

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.81  E-value=2.7e-19  Score=99.02  Aligned_cols=112  Identities=15%  Similarity=0.188  Sum_probs=80.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCC--------CCCCCeEEEecCCCCCCeEEEEEEEcCCCCce--eEeeEEEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVP--------DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ--ASGELKLGG   70 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~--------~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~--~~~~~~v~~   70 (119)
                      .|+.|+|.|.+.+ +.+.+.|+|++..+.        ......|.|.+++..|.|.|.|.+.+..+...  ....+.+..
T Consensus        17 ~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~   95 (188)
T 1oll_A           17 KEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTE   95 (188)
T ss_dssp             TTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEES
T ss_pred             CCCCEEEEEecCC-CCCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecc
Confidence            4899999999875 456899999987542        12346799999999999999999987532222  223444433


Q ss_pred             ecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEc
Q psy12725         71 RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL  115 (119)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~  115 (119)
                      ...+|.+...+ ...+.+|+.+.|.|.+.+ +.+.+.|+|+|..+
T Consensus        96 ~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~  138 (188)
T 1oll_A           96 MYDTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSS  138 (188)
T ss_dssp             CSCCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSC
T ss_pred             cCCCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCccc
Confidence            23456665444 345789999999999765 45689999988654

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.81  E-value=2.5e-18  Score=109.73  Aligned_cols=113  Identities=22%  Similarity=0.406  Sum_probs=87.7

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCC
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDP   74 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~   74 (119)
                      |+.+.|.|.+.+ |.+.+.|++++..+...       ....|.|.+++..|.|.|.|.+.+..+.. .+..+.+.+...+
T Consensus       126 g~~v~l~C~~~~-p~~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~s~~~~l~V~~~p  203 (642)
T 1e07_A          126 KDAVAFTCEPET-QDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSAR-RSDSVILNVLYGP  203 (642)
T ss_pred             CCcEEEEEECCC-CCeeEEEEECCeECCCCCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCc-ccceEEEEEEeCC
Confidence            778999999988 88999999998877532       34689999999999999999999876542 2223333333334


Q ss_pred             CeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      +.+...+....+..|+.+.|.|.+.+.|.+.+.|+++|..+.
T Consensus       204 ~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~  245 (642)
T 1e07_A          204 DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQ  245 (642)
T ss_pred             CCcEEecCCcccccCCEEEEEEEcCCCCCcEEEEEECCeEcc
Confidence            444444555568899999999999999999999999998874

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.81  E-value=2.7e-19  Score=101.83  Aligned_cols=117  Identities=13%  Similarity=0.233  Sum_probs=82.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccC-----------CC----------CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPV-----------PD----------HNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~-----------~~----------~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.+.|.|.+.+.+.+.+.|||..  ...           ..          .....|.|.+++.+|+|.|.|.+.+..
T Consensus        38 ~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~  117 (237)
T 3sob_L           38 VGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTT  117 (237)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             CCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEEEeeccCC
Confidence            4899999999998888899999842  110           00          123469999999999999999998765


Q ss_pred             CC-ceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccC-C-CCeEEEEECCEEccc
Q psy12725         58 ES-AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-P-TPEISWYLDGKKLVN  117 (119)
Q Consensus        58 ~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~~~W~~~~~~~~~  117 (119)
                      +. ......+.+.....+|.+...+.......|+.+.|.|.+.+. | .+.+.|+++|..+..
T Consensus       118 ~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~  180 (237)
T 3sob_L          118 PPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSG  180 (237)
T ss_dssp             SCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCS
T ss_pred             ceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCC
Confidence            32 122334444433346666655544444568889999999874 4 479999999998763

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.81  E-value=2.3e-19  Score=101.06  Aligned_cols=117  Identities=17%  Similarity=0.365  Sum_probs=80.7

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeCC--ccC-------------C------------CCCCCeEEEecCCCCCCeEEEEE
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKDG--KPV-------------P------------DHNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~~--~~~-------------~------------~~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      .|+.|.|.|.+.+. +.+.+.|||..  ...             .            ......|.|.+++.+|+|.|.|.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   93 (218)
T 3s96_B           14 LGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEAIYICG   93 (218)
T ss_dssp             TTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCEEEEEE
Confidence            48999999999988 88899999832  100             0            00124599999999999999999


Q ss_pred             EEcCCC-----CceeEeeEEEeeec-CCCeeeecCCccccCCCCcEEEEeEEcc-CCCC-eEEEEECCEEccc
Q psy12725         53 IRNEQE-----SAQASGELKLGGRF-DPPVIKESFSDETLNPGPNYYFKCIASG-NPTP-EISWYLDGKKLVN  117 (119)
Q Consensus        53 ~~~~~~-----~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~  117 (119)
                      +.+..+     .......+.+.... .+|.+...+.......|+.+.|.|.+.+ .|.+ .+.|+++|..+..
T Consensus        94 ~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~  166 (218)
T 3s96_B           94 VGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQ  166 (218)
T ss_dssp             EEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC--
T ss_pred             EecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcC
Confidence            988654     12223344443211 3566665444444456789999999987 4666 8999999998754

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.80  E-value=2.4e-18  Score=109.82  Aligned_cols=114  Identities=24%  Similarity=0.434  Sum_probs=90.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEcCCCCcee-EeeEEEeeec
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA-SGELKLGGRF   72 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~-~~~~~v~~~~   72 (119)
                      .|+.+.|.|.+.+ +.+.+.|++++..+...       ....|.|.+++..|.|.|.|.+.|..+.... ...+.+.  .
T Consensus       481 ~g~~v~l~C~~~~-~~~~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~--~  557 (642)
T 1e07_A          481 DKDAVAFTCEPEA-QNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVL--Y  557 (642)
T ss_pred             CCCeEEEEEECCC-CCcEEEEEECCEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEE--e
Confidence            3889999999984 78899999999877532       2468999999999999999999998765332 3444443  3


Q ss_pred             CCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         73 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        73 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .|+.+...+....+..|+.+.|.|.+.+.|.+.+.|+++|..+..
T Consensus       558 ~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~  602 (642)
T 1e07_A          558 GPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQH  602 (642)
T ss_pred             CCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECcc
Confidence            455555555566788999999999999999999999999998764

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.80  E-value=4.3e-19  Score=111.45  Aligned_cols=111  Identities=16%  Similarity=0.272  Sum_probs=84.8

Q ss_pred             CCccEEEEEEec-cCCCCeeEEeeCCccCCCC---------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEe
Q psy12725          1 MLALKFFTCKYE-GNPVKTISWMKDGKPVPDH---------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG   64 (119)
Q Consensus         1 ~g~~~~l~c~~~-~~~~~~v~w~~~~~~~~~~---------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~   64 (119)
                      .|+.+.|.|.+. +.|.+.|.|++++..+...               ....|.|.+++.+|.|.|+|.+.|.   .....
T Consensus       241 ~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~  317 (527)
T 3qs9_E          241 VGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSA  317 (527)
T ss_dssp             TTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEE
T ss_pred             CCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceE
Confidence            489999999996 8889999999998865431               1134899999999999999999987   33344


Q ss_pred             eEEEeeecCCCeeeecC--CccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         65 ELKLGGRFDPPVIKESF--SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        65 ~~~v~~~~~~~~~~~~~--~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+.+.   .+|.+...+  ....+.+|+.+.|.|.+.+.|.|.+.|+++|..+..
T Consensus       318 ~L~V~---~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~  369 (527)
T 3qs9_E          318 LVTIV---EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC  369 (527)
T ss_dssp             EEEEC-----CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEEC
T ss_pred             EEEEE---ccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcC
Confidence            44442   345444333  234577899999999999999999999999998854

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.80  E-value=1.2e-18  Score=96.89  Aligned_cols=114  Identities=12%  Similarity=0.256  Sum_probs=77.9

Q ss_pred             CCccEEEEEEecc-CCCCeeEEeeCCccCC----C--------------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEG-NPVKTISWMKDGKPVP----D--------------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~-~~~~~v~w~~~~~~~~----~--------------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      +|+.|+|.|.+.+ .+.+.|.|++++..+.    .                    ..+.+|.|.+++.+|+|.|.|.+.+
T Consensus        12 ~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   91 (193)
T 2if7_A           12 LGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQIST   91 (193)
T ss_dssp             TTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCEEEEEEEEC
T ss_pred             ecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCceEEEEEEe
Confidence            4899999999875 3557899999864321    0                    1246799999999999999999998


Q ss_pred             CCCCceeEeeEEEeeecCCCeeeecCCccccCCCC-cEEEEeEEccC-CCCeEEEEECCEEcc
Q psy12725         56 EQESAQASGELKLGGRFDPPVIKESFSDETLNPGP-NYYFKCIASGN-PTPEISWYLDGKKLV  116 (119)
Q Consensus        56 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~-~~~l~C~~~~~-p~~~~~W~~~~~~~~  116 (119)
                      ..+.......+.|......|.+....  .....|. .+.|.|.+.+. |.|.+.|+++|..+.
T Consensus        92 ~~~~~~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~  152 (193)
T 2if7_A           92 KTSAKLSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLS  152 (193)
T ss_dssp             SSCEEEEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEE
T ss_pred             cCCCeEEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcC
Confidence            76554444445543211123333322  1233455 79999999885 478999999998654

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.80  E-value=1.3e-18  Score=100.20  Aligned_cols=115  Identities=18%  Similarity=0.249  Sum_probs=87.9

Q ss_pred             CCccEEEEEEe-ccCCCCeeEEeeCCccCCCC-CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCeee
Q psy12725          1 MLALKFFTCKY-EGNPVKTISWMKDGKPVPDH-NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIK   78 (119)
Q Consensus         1 ~g~~~~l~c~~-~~~~~~~v~w~~~~~~~~~~-~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~   78 (119)
                      .|+.+.|.|.+ .+.|.+.+.|++++..+... ....|.|..++..|.|.|.|.+.+..+.......+.+.....+|.+.
T Consensus        96 ~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~  175 (262)
T 3rjd_A           96 EGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLN  175 (262)
T ss_dssp             TTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEE
T ss_pred             cCCeEEEEEEccCCCCCceEEEEECCccccccCCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEe
Confidence            38899999999 66678899999999876543 36789999999999999999999986444344455554333456665


Q ss_pred             ecCCccccCCCCcEEEEeEEccCCC-C----eEEEEECCEEcc
Q psy12725         79 ESFSDETLNPGPNYYFKCIASGNPT-P----EISWYLDGKKLV  116 (119)
Q Consensus        79 ~~~~~~~~~~g~~~~l~C~~~~~p~-~----~~~W~~~~~~~~  116 (119)
                      ..+ ...+..|+.+.|.|.+.+.|. +    .+.|++++..+.
T Consensus       176 ~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~  217 (262)
T 3rjd_A          176 ASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLR  217 (262)
T ss_dssp             ESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEE
T ss_pred             ecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEec
Confidence            544 456788999999999988875 4    378999998775

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.80  E-value=8e-19  Score=107.71  Aligned_cols=111  Identities=13%  Similarity=0.122  Sum_probs=76.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC------C--CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeec
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH------N--EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRF   72 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~------~--~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~   72 (119)
                      .|+.+.|.|.+.+.|.+.|.|++++..+...      .  ...|.|.+++.+|.|.|+|.+.|..+.......+.|.   
T Consensus        62 ~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~---  138 (423)
T 3qs7_E           62 VSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIR---  138 (423)
T ss_dssp             SSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC---
T ss_pred             cCCcEEEEEEEEcCCCCeEEEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEe---
Confidence            4899999999999999999999988654321      1  1358999999999999999999987655544555543   


Q ss_pred             CCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEc
Q psy12725         73 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL  115 (119)
Q Consensus        73 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~  115 (119)
                      .+|.+... .......|+.+.|.|.+.|.|.|.+.|++++..+
T Consensus       139 ~~p~~~~~-~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~  180 (423)
T 3qs7_E          139 NTLLYTLR-RPYFRKMENQDALVCISESVPEPIVEWVLCDSQG  180 (423)
T ss_dssp             -----CEE-EEEEEECSSSSCEEEEEEESSCCEEEEEEC----
T ss_pred             cCcccccc-CCcEeccCCceEEEEEEeeecCCeEEEEECCCCC
Confidence            23333211 1122345777889999999999999999987654

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.80  E-value=8.3e-19  Score=109.72  Aligned_cols=114  Identities=19%  Similarity=0.297  Sum_probs=90.0

Q ss_pred             CCccEEEEEEeccCCCCe-eEEeeCCccC--CC------------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEee
Q psy12725          1 MLALKFFTCKYEGNPVKT-ISWMKDGKPV--PD------------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE   65 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~-v~w~~~~~~~--~~------------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~   65 (119)
                      .|+.+.|.|.+.+.|.+. +.|++++..+  ..            .....|.|.+++..|.|.|.|.+.+..+.......
T Consensus       225 ~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~  304 (524)
T 2ec8_A          225 EGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTT  304 (524)
T ss_dssp             TTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEE
T ss_pred             cCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEE
Confidence            489999999999888776 9999998873  21            12367899999999999999999998776655555


Q ss_pred             EEEeeecCCCeeeecCC---ccccCCCCcEEEEeEEccCCCCe-EEEEECCEEccc
Q psy12725         66 LKLGGRFDPPVIKESFS---DETLNPGPNYYFKCIASGNPTPE-ISWYLDGKKLVN  117 (119)
Q Consensus        66 ~~v~~~~~~~~~~~~~~---~~~~~~g~~~~l~C~~~~~p~~~-~~W~~~~~~~~~  117 (119)
                      +.+.   .+|.+...+.   ...+.+|+.+.|.|.+.+.|.|. +.|+++|..+..
T Consensus       305 l~V~---~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~  357 (524)
T 2ec8_A          305 LEVV---DKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTD  357 (524)
T ss_dssp             EEEE---SSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSS
T ss_pred             EEEe---ccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccC
Confidence            5553   4566554432   45678999999999999999998 999999987654

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.80  E-value=3.4e-19  Score=106.49  Aligned_cols=117  Identities=20%  Similarity=0.343  Sum_probs=74.5

Q ss_pred             CCccEEEEEEe-----ccCCCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCce--eEeeEEE
Q psy12725          1 MLALKFFTCKY-----EGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ--ASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~-----~~~~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~--~~~~~~v   68 (119)
                      .|+.+.|.|..     .+.|.+.+.|++++..+...     ....|.|.+++.+|.|.|+|.+.+..+...  ....+.+
T Consensus       134 ~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l  213 (349)
T 4dep_C          134 EYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTV  213 (349)
T ss_dssp             TCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEE
Confidence            37889999984     66788999999999887542     246799999999999999999998752222  2333333


Q ss_pred             eeecC-----CCeeeecCCcc--ccCCCCcEEEEeEEc----cCCCCeEEEEECCEEccc
Q psy12725         69 GGRFD-----PPVIKESFSDE--TLNPGPNYYFKCIAS----GNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        69 ~~~~~-----~~~~~~~~~~~--~~~~g~~~~l~C~~~----~~p~~~~~W~~~~~~~~~  117 (119)
                      .+...     +|.+.......  .+..|+.+.|.|.+.    +.|.+.+.|+++|..+..
T Consensus       214 ~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~  273 (349)
T 4dep_C          214 KVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDD  273 (349)
T ss_dssp             EEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC----
T ss_pred             EEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccc
Confidence            33222     45554443322  677899999999987    568889999999987654

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.80  E-value=4.9e-19  Score=99.34  Aligned_cols=115  Identities=14%  Similarity=0.196  Sum_probs=81.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC------------C---------CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP------------D---------HNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~------------~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.|.|.|.+.  +.+.+.|||+  +....            .         .....|.|.+++.+|+|.|.|.+.+..
T Consensus        14 ~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   91 (211)
T 3tv3_L           14 PGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCGSLVGN   91 (211)
T ss_dssp             TTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEEEEETT
T ss_pred             CCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEEEecCC
Confidence            489999999998  7789999984  22110            0         112469999999999999999999876


Q ss_pred             C--CceeEeeEEEeee-cCCCeeeecCCccccCCCCcEEEEeEEccCC--CCeEEEEECCEEccc
Q psy12725         58 E--SAQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGNP--TPEISWYLDGKKLVN  117 (119)
Q Consensus        58 ~--~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~~~~~~~  117 (119)
                      +  .......+.+... ..+|.+...+.......|+.+.|.|.+.+.+  .+.+.|+++|..+..
T Consensus        92 ~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  156 (211)
T 3tv3_L           92 WDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKA  156 (211)
T ss_dssp             TEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             CceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCC
Confidence            5  2333344554321 1366666655444445799999999998753  468999999998753

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.80  E-value=4e-18  Score=92.71  Aligned_cols=109  Identities=17%  Similarity=0.327  Sum_probs=80.8

Q ss_pred             CCccEEEEEEeccCC-CCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCeeee
Q psy12725          1 MLALKFFTCKYEGNP-VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKE   79 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~-~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~   79 (119)
                      .|+.+.|.|.+.+.+ .+.+.|++++..+... ...+.+.+++..|.|.|.|.+.+....  ....+.+.   .++.+..
T Consensus        18 ~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~-~~~~~~~~~~~~d~G~Y~C~~~~~~~s--~~~~l~v~---~~~~~~~   91 (170)
T 3ry4_A           18 QEDSVTLTCQGARSPESDSIQWFHNGNLIPTH-TQPSYRFKANNNDSGEYTCQTGQTSLS--DPVHLTVL---FEWLVLQ   91 (170)
T ss_dssp             TTCEEEEEEESCCCSSSSCEEEEETTEECTTC-CSSEEEEECCGGGCEEEEEEETTSBCC--CCEEEEEE---CCSEEEE
T ss_pred             CCCcEEEEEEecCCCCcceEEEEECCeEcccC-ccceEEEecccccCeEEEEEEeCCCce--EeEEEEEE---CCceEec
Confidence            489999999998876 6789999999987643 456777889999999999999875322  23333332   2333333


Q ss_pred             cCCccccCCCCcEEEEeEEc-cCCCCeEEEEECCEEcc
Q psy12725         80 SFSDETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKLV  116 (119)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~~  116 (119)
                       .....+.+|+.+.|.|.+. +.|.+.+.|+++|..+.
T Consensus        92 -~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~  128 (170)
T 3ry4_A           92 -TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQK  128 (170)
T ss_dssp             -CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEE
T ss_pred             -CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEcc
Confidence             3344577899999999994 45667999999998764

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.80  E-value=5.1e-19  Score=99.35  Aligned_cols=117  Identities=14%  Similarity=0.293  Sum_probs=80.1

Q ss_pred             CCccEEEEEEeccCC---CCeeEEeeCC--ccC--------------CC-------CCCCeEEEecCCCCCCeEEEEEEE
Q psy12725          1 MLALKFFTCKYEGNP---VKTISWMKDG--KPV--------------PD-------HNEPVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~---~~~v~w~~~~--~~~--------------~~-------~~~~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      .|+.|.|.|.+.+.+   .+.+.|+|++  ..+              ..       .....|.|.+++.+|+|.|.|.+.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   93 (212)
T 1q0x_L           14 PGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYFCALW   93 (212)
T ss_dssp             TTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCEEEEEEEe
Confidence            489999999998876   4789999853  211              00       112379999999999999999999


Q ss_pred             cCCCCc-eeEeeEEEeee-cCCCeeeecCCccccCCCCcEEEEeEEccCC-CC-eEEEEECCEEccc
Q psy12725         55 NEQESA-QASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGNP-TP-EISWYLDGKKLVN  117 (119)
Q Consensus        55 ~~~~~~-~~~~~~~v~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~-~~~W~~~~~~~~~  117 (119)
                      +..+.. .....+.+... ..+|.+...+.......|+.+.|.|.+.+.+ ++ .+.|+++|..+..
T Consensus        94 ~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~  160 (212)
T 1q0x_L           94 SNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTA  160 (212)
T ss_dssp             CSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             cCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCC
Confidence            875321 12233444221 1356666544433345688999999998754 33 8999999988753

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.80  E-value=3.3e-18  Score=98.92  Aligned_cols=113  Identities=12%  Similarity=0.217  Sum_probs=81.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCC----------CCCCCeEEEecCCCCCCeEEEEEEEcCCC-----CceeEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNEQE-----SAQASGE   65 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~----------~~~~~~l~~~~~~~~d~g~y~C~~~~~~~-----~~~~~~~   65 (119)
                      .|+.|+|.|.+.+ +.+.+.|||++..+.          ......|.|.+++.+|.|.|.|.+.+...     .......
T Consensus        20 ~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~   98 (257)
T 1b6u_A           20 SEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLD   98 (257)
T ss_dssp             SSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEE
T ss_pred             CCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEE
Confidence            3899999999975 567899999987542          11346799999999999999999986422     1122334


Q ss_pred             EEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         66 LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        66 ~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      +.|.....+|.+...+. ..+.+|+.++|.|.+.+. .+.+.|+|+|..+.
T Consensus        99 L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~  147 (257)
T 1b6u_A           99 IVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHE  147 (257)
T ss_dssp             EEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCE
T ss_pred             EecccCCCCcceEccCC-CccCCCCEEEEEEeCCCC-CcEEEEEECCcccC
Confidence            44443334566665543 467899999999998765 46899999987553

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.80  E-value=3.1e-19  Score=106.09  Aligned_cols=114  Identities=27%  Similarity=0.537  Sum_probs=86.3

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC----------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeee
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGR   71 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~   71 (119)
                      |+.+.|.|.+.+.|.+.+.|++++..+...          ....|.|.+++..|.|.|.|.+.+..+.......+.+...
T Consensus       138 g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  217 (334)
T 1ry7_B          138 ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER  217 (334)
T ss_dssp             TCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCcEEEEEEccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecC
Confidence            789999999999898999999998766432          2358999999999999999999998765544555555431


Q ss_pred             c-CCCeeee-cCCccccCCCCcEEEEeEEccCCCCeEEEEE----CCEEc
Q psy12725         72 F-DPPVIKE-SFSDETLNPGPNYYFKCIASGNPTPEISWYL----DGKKL  115 (119)
Q Consensus        72 ~-~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~----~~~~~  115 (119)
                      . .+|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++    +|..+
T Consensus       218 ~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~  267 (334)
T 1ry7_B          218 SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKV  267 (334)
T ss_dssp             CCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSB
T ss_pred             CCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccc
Confidence            1 1233332 2344567789999999999999999999999    55544

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.80  E-value=1.3e-18  Score=97.98  Aligned_cols=117  Identities=12%  Similarity=0.184  Sum_probs=78.3

Q ss_pred             CCccEEEEEEe-ccCC-CCeeEEeeCCc--cCC----------C-----------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKY-EGNP-VKTISWMKDGK--PVP----------D-----------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~-~~~~-~~~v~w~~~~~--~~~----------~-----------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.+ .+.+ .+.+.|+|++.  .+.          .           .....|.|.+++.+|+|.|.|.+.+
T Consensus        14 ~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   93 (216)
T 2xzc_L           14 PGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWD   93 (216)
T ss_dssp             TTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEEEEEEEEe
Confidence            48999999995 4332 57899998542  110          0           0123699999999999999999998


Q ss_pred             CCCC--ceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725         56 EQES--AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLVN  117 (119)
Q Consensus        56 ~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~  117 (119)
                      ..+.  ......+.+.....+|.+...+.......|+.+.|.|.+.+. |.+ .+.|+++|..+..
T Consensus        94 ~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~  159 (216)
T 2xzc_L           94 SSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSG  159 (216)
T ss_dssp             TTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCS
T ss_pred             CCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCC
Confidence            7641  122334444322235666554333223358899999999874 554 8999999998754

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.79  E-value=5.6e-18  Score=97.55  Aligned_cols=109  Identities=19%  Similarity=0.340  Sum_probs=84.0

Q ss_pred             CCccEEEEEEeccCCCC-eeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCeeee
Q psy12725          1 MLALKFFTCKYEGNPVK-TISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKE   79 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~-~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~   79 (119)
                      .|+.+.|.|.+.+.+.+ .+.|++++..+.. ....|.|.+++..|.|.|.|.+.+.....  ...+.+.   .++ +..
T Consensus        15 ~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~s~--~~~l~v~---~~~-~~~   87 (262)
T 3rjd_A           15 QEETVTLHCEVLHLPGSSSTQWFLNGTATQT-STPSYRITSASVNDSGEYRCQRGLSGRSD--PIQLEIH---RGW-LLL   87 (262)
T ss_dssp             TTCCEEEEEECSSCCCTTCEEEEETTEECSC-CSSEEEESSCCGGGCEEEEEEESSSCCCC--CEEEEEE---CSS-EEE
T ss_pred             CCCeEEEEEECCCCCCCceEEEEECCEEeec-cCCeEEEecCCcccCeEEEEEEecCCccc--cEEEEEe---ccc-eEe
Confidence            48999999999888877 9999999988754 46789999999999999999998754322  2333332   233 233


Q ss_pred             cCCccccCCCCcEEEEeEE-ccCCCCeEEEEECCEEcc
Q psy12725         80 SFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~  116 (119)
                      .+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.
T Consensus        88 ~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~  125 (262)
T 3rjd_A           88 QVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFK  125 (262)
T ss_dssp             EESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEE
T ss_pred             cCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccc
Confidence            3344457789999999999 667778999999998765

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.79  E-value=5.3e-19  Score=105.31  Aligned_cols=116  Identities=22%  Similarity=0.401  Sum_probs=88.2

Q ss_pred             CCccEEEEEE-----eccCCCCeeEEeeCCccCCCC--------CCCeEEEecCCCCCCeEEEEEEEcCCCCc----eeE
Q psy12725          1 MLALKFFTCK-----YEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESA----QAS   63 (119)
Q Consensus         1 ~g~~~~l~c~-----~~~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~----~~~   63 (119)
                      .|+.+.|.|.     ..+.|.+.+.|++++..+...        ....|.|..++..|.|.|+|.+.+..+..    ...
T Consensus       134 ~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~  213 (339)
T 3o4o_C          134 LSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRS  213 (339)
T ss_dssp             TTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEE
T ss_pred             CCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEE
Confidence            4889999999     777888999999999877543        22579999999999999999999876532    223


Q ss_pred             eeEEEeeec--CCCeeeecCCccccCCCCcEEEEeEE---ccCC-CCeEEEEECCEEcc
Q psy12725         64 GELKLGGRF--DPPVIKESFSDETLNPGPNYYFKCIA---SGNP-TPEISWYLDGKKLV  116 (119)
Q Consensus        64 ~~~~v~~~~--~~~~~~~~~~~~~~~~g~~~~l~C~~---~~~p-~~~~~W~~~~~~~~  116 (119)
                      ..+.+....  .+|.+...+....+..|+.+.|.|.+   .+.| .+.+.|++++..+.
T Consensus       214 ~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~  272 (339)
T 3o4o_C          214 IELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIE  272 (339)
T ss_dssp             EEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSS
T ss_pred             EEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecc
Confidence            344443211  24566655555578899999999999   8888 77999999987653

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.79  E-value=6.1e-18  Score=93.05  Aligned_cols=102  Identities=24%  Similarity=0.545  Sum_probs=76.8

Q ss_pred             CCccEEEEEEeccCCCC--eeEEeeCCccCCCCC----CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCC
Q psy12725          1 MLALKFFTCKYEGNPVK--TISWMKDGKPVPDHN----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDP   74 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~--~v~w~~~~~~~~~~~----~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~   74 (119)
                      .|+.+.|.|.+.+.+.+  .+.|++++..+....    ...+.+.  +..|.|.|.|.+.+..   .....+.+.   .+
T Consensus        12 ~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~~~~~l~i~--~~~d~G~Y~C~~~n~~---~~~~~l~V~---~~   83 (184)
T 3b5h_A           12 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVD--SDDQWGEYSCVFLPEP---MGTANIQLH---GP   83 (184)
T ss_dssp             ETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEEEEEEC--GGGCCEEEEEEEESTT---SCEEEEEEC---CS
T ss_pred             cCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccCCcEEEEEe--chhhCeEEEEEEECCc---CcEEEEEEe---cC
Confidence            38999999999877666  899999998765432    1234443  6889999999999832   233444443   46


Q ss_pred             CeeeecCCccccCCCCcEEEEeEEccCC-CCeEEEEE
Q psy12725         75 PVIKESFSDETLNPGPNYYFKCIASGNP-TPEISWYL  110 (119)
Q Consensus        75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~  110 (119)
                      |.+...+....+..|+.+.|.|.+.+.| .+.+.|++
T Consensus        84 P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~  120 (184)
T 3b5h_A           84 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYK  120 (184)
T ss_dssp             CCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEE
T ss_pred             CceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEE
Confidence            6666666555688999999999999998 78999999

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.79  E-value=5.8e-18  Score=94.82  Aligned_cols=115  Identities=16%  Similarity=0.268  Sum_probs=80.0

Q ss_pred             CCccEEEEEEeccCCCC---eeEEeeCCccCCC------------------------------CCCCeEEEecCCCCCCe
Q psy12725          1 MLALKFFTCKYEGNPVK---TISWMKDGKPVPD------------------------------HNEPVFRIDSVRKEDKG   47 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~---~v~w~~~~~~~~~------------------------------~~~~~l~~~~~~~~d~g   47 (119)
                      +|+.+.|.|.+.+.+.+   .|.|+|++.....                              ....+|.|.+++.+|+|
T Consensus        13 ~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G   92 (218)
T 4frw_A           13 LGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQADEG   92 (218)
T ss_dssp             TTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSCCGGGCE
T ss_pred             cCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeeccHHHCC
Confidence            49999999999887654   4899997643311                              12356999999999999


Q ss_pred             EEEEEEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         48 MYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        48 ~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      .|.|.+.+..+....... .+.....++..........+..+..+.+.|.+.+.|.|.+.|++++..+.
T Consensus        93 ~Y~C~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~  160 (218)
T 4frw_A           93 EYECRVSTFPAGSFQARL-RLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTT  160 (218)
T ss_dssp             EEEEEEEEETTEEEEEEE-EEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEE
T ss_pred             ceeEEEEeccCceeeeEE-EEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccc
Confidence            999998875433222221 22221223333333444456788999999999999999999999887554

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.78  E-value=2.6e-18  Score=96.18  Aligned_cols=108  Identities=19%  Similarity=0.380  Sum_probs=79.3

Q ss_pred             CCccEEEEEEeccCC----CCeeEEeeC----------------CccCCC-----------------CCCCeEEEecCCC
Q psy12725          1 MLALKFFTCKYEGNP----VKTISWMKD----------------GKPVPD-----------------HNEPVFRIDSVRK   43 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~----~~~v~w~~~----------------~~~~~~-----------------~~~~~l~~~~~~~   43 (119)
                      .|+.+.|.|.+.+.+    .+.+.|+++                +.....                 .....|.|.+++.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~   93 (214)
T 3jz7_A           14 KGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQL   93 (214)
T ss_dssp             TTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEEECSCCG
T ss_pred             cCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEEEccCCh
Confidence            489999999998766    468999883                322210                 0246799999999


Q ss_pred             CCCeEEEEEEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEE-ccCCCCeEEEEEC
Q psy12725         44 EDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLD  111 (119)
Q Consensus        44 ~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~  111 (119)
                      +|.|.|.|.+.+..+.......+.+.   .+|.+...+....+..|+.+.|.|.+ .+.|.+.+.|+++
T Consensus        94 ~D~G~Y~C~~~~~~~~~~~~~~l~V~---~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~  159 (214)
T 3jz7_A           94 SDIGTYQCKVKKAPGVANKKFLLTVL---VKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKL  159 (214)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEE---CCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEEC
T ss_pred             hhCeEEEEEEEeCCCccccEEEEEEE---cCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEEC
Confidence            99999999999876544444555553   34444433334457889999999999 7889999999994

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.78  E-value=3.8e-18  Score=99.63  Aligned_cols=113  Identities=24%  Similarity=0.523  Sum_probs=82.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEee-CCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMK-DGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG   70 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~-~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~   70 (119)
                      .|+.+.|.|.+.+.|. .+.|++ ++..+....         ...|.|.+++..|.|.|.|.+.+..+... ...+.+.+
T Consensus        18 ~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~-~~~~~l~v   95 (291)
T 2wim_A           18 VGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ-EATVVLEI   95 (291)
T ss_dssp             TTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEE-EEEEEEEE
T ss_pred             CCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceE-EEEEEEEe
Confidence            4899999999998764 899999 666554321         24799999999999999999999765432 23333333


Q ss_pred             ecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         71 RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                       ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus        96 -~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~  140 (291)
T 2wim_A           96 -YQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVT  140 (291)
T ss_dssp             -ECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----C
T ss_pred             -cCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCcccc
Confidence             245555555555567899999999999999999999999987664

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.78  E-value=1.2e-18  Score=98.24  Aligned_cols=115  Identities=17%  Similarity=0.339  Sum_probs=80.7

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--ccCC-------------------C---------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KPVP-------------------D---------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~~~-------------------~---------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.+.|.|.+.+.+  .+.+.|+|+.  ..+.                   .         .....|.|.+++.+|+|.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   93 (219)
T 1c1e_H           14 PGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKNEDMAT   93 (219)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCGGGCEE
T ss_pred             CCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCcccCEE
Confidence            489999999998764  6789999863  2210                   0         012479999999999999


Q ss_pred             EEEEEEcCCCCc----eeEeeEEEeee-cCCCeeeecCCccccCCCCcEEEEeEEcc-CCCC-eEEEEECCEEc
Q psy12725         49 YQCVIRNEQESA----QASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASG-NPTP-EISWYLDGKKL  115 (119)
Q Consensus        49 y~C~~~~~~~~~----~~~~~~~v~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~  115 (119)
                      |.|.+.+..+..    .....+.+... ..+|.+...+....+..|+.+.|.|.+.+ .|.| .+.|+++|..+
T Consensus        94 Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  167 (219)
T 1c1e_H           94 YFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS  167 (219)
T ss_dssp             EEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             EEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCccc
Confidence            999999875211    12334444321 12355544443445678999999999988 7888 99999998753

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.78  E-value=1.4e-17  Score=93.98  Aligned_cols=111  Identities=17%  Similarity=0.304  Sum_probs=76.2

Q ss_pred             CCccEEEEEEeccCC-----CCeeEEeeCCccC---------CC------------------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP-----VKTISWMKDGKPV---------PD------------------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~-----~~~v~w~~~~~~~---------~~------------------~~~~~l~~~~~~~~d~g~   48 (119)
                      +|+.+.|.|.+.+.|     ...+.|++++..+         ..                  ....+|.|.+++.+|+|.
T Consensus        15 ~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~   94 (222)
T 3sbw_C           15 YGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGV   94 (222)
T ss_dssp             TTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCCGGGCEE
T ss_pred             cCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcccccCeE
Confidence            489999999987655     3489999964211         00                  012479999999999999


Q ss_pred             EEEEEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEEC-CEEc
Q psy12725         49 YQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD-GKKL  115 (119)
Q Consensus        49 y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~-~~~~  115 (119)
                      |.|.+.+ .+.......+.|......+....   ......|+.+.|.|.+.|.|.|.+.|+++ +..+
T Consensus        95 Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~---~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~  158 (222)
T 3sbw_C           95 YRCMISY-GGADYKRITVKVNAPYNKINQRI---LVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVL  158 (222)
T ss_dssp             EEEEEES-SSEEEEEEEEEEEBCCCCCEEEE---EEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEE
T ss_pred             EEEEEEe-CCCceeEEEEEEECCCCCCCcee---eeeecCCCcEEEEEEecCCCCCeEEEEECCCcee
Confidence            9999998 33333444454442211221111   12456899999999999999999999998 5544

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.78  E-value=7e-19  Score=99.45  Aligned_cols=116  Identities=15%  Similarity=0.225  Sum_probs=80.1

Q ss_pred             CCccEEEEEEeccC---C-CCeeEEeeCCccCCCC--------------CCCeEEEecCCCCCCeEEEEEEEcCCCCcee
Q psy12725          1 MLALKFFTCKYEGN---P-VKTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA   62 (119)
Q Consensus         1 ~g~~~~l~c~~~~~---~-~~~v~w~~~~~~~~~~--------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~   62 (119)
                      .|+.+.|.|.+.+.   + .+.|.|+|++..+...              ....|.|..++..|.|.|.|.+.+..+....
T Consensus        25 ~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~  104 (218)
T 2rgs_A           25 ISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPSPI  104 (218)
T ss_dssp             TTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSSCE
T ss_pred             cCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCCcc
Confidence            48999999999876   3 3789999998665321              0135778888889999999999987654311


Q ss_pred             EeeEEE-eeecCCCeeeecCCccccCCCCcEEEEeEEcc-CCCC-eEEEEECCEEcc
Q psy12725         63 SGELKL-GGRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTP-EISWYLDGKKLV  116 (119)
Q Consensus        63 ~~~~~v-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~  116 (119)
                      ...+.. .....+|.+...+.......|+.+.|.|.+.| .|.+ .+.|+++|..+.
T Consensus       105 ~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~  161 (218)
T 2rgs_A          105 ERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEE  161 (218)
T ss_dssp             EEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             eEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEecc
Confidence            222211 01124666655444333346899999999988 4665 899999998764

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.78  E-value=1.3e-18  Score=102.60  Aligned_cols=116  Identities=19%  Similarity=0.307  Sum_probs=83.0

Q ss_pred             CccEEEEEEecc----------CCCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEcCCCCcee
Q psy12725          2 LALKFFTCKYEG----------NPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQA   62 (119)
Q Consensus         2 g~~~~l~c~~~~----------~~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~   62 (119)
                      |+.+.|.|...+          .|.+.+.|++++..+....         ...|.|.+++..|.|.|.|.+.+..+....
T Consensus       113 g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  192 (317)
T 2y25_A          113 ATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQK  192 (317)
T ss_dssp             BCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEE
Confidence            556666666655          5788999999998775422         134899999999999999999997665544


Q ss_pred             EeeEEEee-----------------ecCCCeeeec-CCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         63 SGELKLGG-----------------RFDPPVIKES-FSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        63 ~~~~~v~~-----------------~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ...+.+..                 ...+|.+... +....+..|+.+.|.|.+.+.|.|.+.|+++|..+..
T Consensus       193 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~  265 (317)
T 2y25_A          193 TVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAS  265 (317)
T ss_dssp             EEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECC
T ss_pred             EEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCC
Confidence            44443210                 0012333332 3345678999999999999999999999999987754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.78  E-value=7.8e-19  Score=105.19  Aligned_cols=110  Identities=15%  Similarity=0.297  Sum_probs=85.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCC-------CCCCCeEEEecCCCCCCe-EEEEEEEcCCCCceeEeeEEEeeec
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVP-------DHNEPVFRIDSVRKEDKG-MYQCVIRNEQESAQASGELKLGGRF   72 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~-------~~~~~~l~~~~~~~~d~g-~y~C~~~~~~~~~~~~~~~~v~~~~   72 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+.       ......|.|..++..|.| .|.|.+.+..+.......+.+.   
T Consensus       172 ~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~---  248 (347)
T 2ifg_A          172 VGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS---  248 (347)
T ss_dssp             TTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCB---
T ss_pred             CCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEc---
Confidence            48999999999999999999999886542       123467999999999999 9999999986555444444432   


Q ss_pred             CCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         73 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        73 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+|.+    .......|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus       249 ~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~  289 (347)
T 2ifg_A          249 FPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNE  289 (347)
T ss_dssp             EEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCC
T ss_pred             CCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCC
Confidence            24443    112345789999999999999999999999998764

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.78  E-value=2.1e-18  Score=99.23  Aligned_cols=117  Identities=19%  Similarity=0.308  Sum_probs=80.2

Q ss_pred             CCccEEEEEEeccCC-----CCeeEEeeCCc--cC--------------CC-------CCCCeEEEecCCCCCCeEEEEE
Q psy12725          1 MLALKFFTCKYEGNP-----VKTISWMKDGK--PV--------------PD-------HNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~-----~~~v~w~~~~~--~~--------------~~-------~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      .|+.|+|.|.+.+.+     .+.+.|||++.  ..              ..       .....|.|.+++.+|+|.|.|.
T Consensus        48 ~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  127 (252)
T 3bkj_L           48 LGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAEDLGVYYCF  127 (252)
T ss_dssp             TTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCcccCEEEEEE
Confidence            489999999998876     58899998541  11              00       0123799999999999999999


Q ss_pred             EEcCCCCc-eeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725         53 IRNEQESA-QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLVN  117 (119)
Q Consensus        53 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~  117 (119)
                      +.+..... .....+.|.....+|.+...+......+|+.+.|.|.+.+. |.+ .+.|+++|..+..
T Consensus       128 ~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~  195 (252)
T 3bkj_L          128 QASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQN  195 (252)
T ss_dssp             ECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECS
T ss_pred             EEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCC
Confidence            98864321 12234444332235666654433334468899999999874 444 7999999987653

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.77  E-value=2.1e-18  Score=99.23  Aligned_cols=117  Identities=18%  Similarity=0.302  Sum_probs=79.3

Q ss_pred             CCccEEEEEEeccCC-----CCeeEEeeCC--ccCC----------C--C---------CCCeEEEecCCCCCCeEEEEE
Q psy12725          1 MLALKFFTCKYEGNP-----VKTISWMKDG--KPVP----------D--H---------NEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~-----~~~v~w~~~~--~~~~----------~--~---------~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      .|+.++|.|.+.+.+     .+.+.|+|++  ..+.          .  .         ....|.|.+++.+|.|.|.|.
T Consensus        52 ~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  131 (254)
T 2c1o_A           52 IGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCV  131 (254)
T ss_dssp             TTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             CCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEE
Confidence            489999999998876     4899999743  2110          0  0         123799999999999999999


Q ss_pred             EEcCCCCc-eeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccC-CC-CeEEEEECCEEccc
Q psy12725         53 IRNEQESA-QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PT-PEISWYLDGKKLVN  117 (119)
Q Consensus        53 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~~  117 (119)
                      +.+..... .....+.+.....+|.+...+.......|+.+.|.|.+.+. |+ +.+.|+++|..+..
T Consensus       132 a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  199 (254)
T 2c1o_A          132 QGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQN  199 (254)
T ss_dssp             ECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECT
T ss_pred             EEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccC
Confidence            98874321 11234444332235666654433333457799999999875 43 35999999987654

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.77  E-value=1e-18  Score=98.05  Aligned_cols=116  Identities=14%  Similarity=0.187  Sum_probs=79.7

Q ss_pred             CCccEEEEEEeccCC----CCeeEEeeCCccCCCC--------C------CCeEEEecCCCCCCeEEEEEEEcCCCCcee
Q psy12725          1 MLALKFFTCKYEGNP----VKTISWMKDGKPVPDH--------N------EPVFRIDSVRKEDKGMYQCVIRNEQESAQA   62 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~----~~~v~w~~~~~~~~~~--------~------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~   62 (119)
                      +|+.+.|.|.+.+.+    ...|.|+|++..+...        .      ...|.|.+++..|.|.|.|.+.+..+....
T Consensus        17 ~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~   96 (207)
T 2vol_A           17 ITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPI   96 (207)
T ss_dssp             TTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSSCE
T ss_pred             cCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCCce
Confidence            489999999998763    2489999988654321        1      135778888889999999999997654322


Q ss_pred             EeeEEEe-eecCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEEcc
Q psy12725         63 SGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLV  116 (119)
Q Consensus        63 ~~~~~v~-~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~  116 (119)
                      ...+.+. ....+|.+...+.......|+.+.|.|.+.+. |.+ .+.|+++|..+.
T Consensus        97 ~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  153 (207)
T 2vol_A           97 EKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAE  153 (207)
T ss_dssp             EEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             EEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEecc
Confidence            2222210 11246666554443333468999999999885 443 899999999774

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.77  E-value=6.4e-18  Score=106.91  Aligned_cols=115  Identities=22%  Similarity=0.377  Sum_probs=82.4

Q ss_pred             CCccEEEEEEe-ccCCCCeeEEeeCCccCC------------------CCCCCeEEEecCCCCCCeEEEEEEEcCCCCc-
Q psy12725          1 MLALKFFTCKY-EGNPVKTISWMKDGKPVP------------------DHNEPVFRIDSVRKEDKGMYQCVIRNEQESA-   60 (119)
Q Consensus         1 ~g~~~~l~c~~-~~~~~~~v~w~~~~~~~~------------------~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~-   60 (119)
                      +|+.++|.|.+ .+.|.+.+.|++++..+.                  .....+|.|.+++.+|.|.|+|.+.+..+.. 
T Consensus       380 ~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~  459 (581)
T 3o3u_N          380 IGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKET  459 (581)
T ss_dssp             TTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEECTTSCEE
T ss_pred             cCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEcCCCcee
Confidence            48999999999 677888999999765220                  0123579999999999999999999987654 


Q ss_pred             eeEeeEEEeeecCCCeeeecCCccccCCCCc-EEEEeEEcc-CCCCeEEEEECCEEccc
Q psy12725         61 QASGELKLGGRFDPPVIKESFSDETLNPGPN-YYFKCIASG-NPTPEISWYLDGKKLVN  117 (119)
Q Consensus        61 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~-~~l~C~~~~-~p~~~~~W~~~~~~~~~  117 (119)
                      .....+.|......|.+....  ..+..+.. +.|.|.+.+ .|.|.+.|+++|..+..
T Consensus       460 ~~~~~l~V~~~~~~p~i~~~~--~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~  516 (581)
T 3o3u_N          460 KSNYRVRVYQIPGKPEIVDSA--SELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVP  516 (581)
T ss_dssp             EEEEEEEEEBCCCCCEEESCC--SEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCT
T ss_pred             EEEEEEEEEcCCCCCEEEcCC--cccccCCceeEEEEECCCCCCCCeEEEEECCEECCC
Confidence            444555554322334433322  23445544 466999887 58899999999998763

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.77  E-value=6.1e-18  Score=102.61  Aligned_cols=115  Identities=24%  Similarity=0.362  Sum_probs=85.3

Q ss_pred             CCccEEEEEEecc-CCCCeeEEeeCCccCCCC--------CCCeEEEecC-----CCCCCeEEEEEEEcCCCCceeEeeE
Q psy12725          1 MLALKFFTCKYEG-NPVKTISWMKDGKPVPDH--------NEPVFRIDSV-----RKEDKGMYQCVIRNEQESAQASGEL   66 (119)
Q Consensus         1 ~g~~~~l~c~~~~-~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~-----~~~d~g~y~C~~~~~~~~~~~~~~~   66 (119)
                      .|+.+.|.|.+.+ .|.+.+.|+|++..+...        ....+.+.++     +..|.|.|.|.+.+.......+..+
T Consensus        35 ~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~~~  114 (403)
T 3laf_A           35 RGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTA  114 (403)
T ss_dssp             TTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECTTSCEEECSCCCBTTBCSSCEEEEEEEECGGGCEEECCCE
T ss_pred             cCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEecCCcEEEeeeeccCCCCCcceEEEEEEEeCCCccEEEEEE
Confidence            3899999999976 477889999999877432        2456777776     6679999999998643322223333


Q ss_pred             EEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         67 KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        67 ~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      .+.+. .++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus       115 ~l~v~-~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~  163 (403)
T 3laf_A          115 KVMVA-GPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLN  163 (403)
T ss_dssp             EEEEC-CCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCC
T ss_pred             EEEec-CCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEecc
Confidence            44332 45666655556678899999999999888889999999987763

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.77  E-value=8e-18  Score=105.29  Aligned_cols=116  Identities=14%  Similarity=0.208  Sum_probs=83.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccCC--------------C-------CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPVP--------------D-------HNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~~--------------~-------~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.+.|.|.+.+.+.+.+.|||++  ..+.              .       .....|.|.+++.+|+|.|.|.+.+..
T Consensus        14 ~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   93 (523)
T 2rcj_C           14 PGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYYCASWNSS   93 (523)
T ss_pred             cCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEEEEEEEccCC
Confidence            4899999999988888899999964  1110              0       112479999999999999999999865


Q ss_pred             CC---ceeEeeEEEeee-cCCCeeeecCCccccCCCCcEEEEeEEccCCCC--eEEEEECCEEcc
Q psy12725         58 ES---AQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGNPTP--EISWYLDGKKLV  116 (119)
Q Consensus        58 ~~---~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~  116 (119)
                      +.   ......+.|... ..+|.+...+....+.+|+.+.|.|.+.+.+++  .+.|+++|..+.
T Consensus        94 g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~  158 (523)
T 2rcj_C           94 DNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVK  158 (523)
T ss_pred             CccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCC
Confidence            32   122334444211 235666655555556789999999999888654  899999998764

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.77  E-value=2.5e-18  Score=102.29  Aligned_cols=114  Identities=14%  Similarity=0.153  Sum_probs=85.4

Q ss_pred             CCccEEEEEEeccC---------CCCeeEEeeCCccCCC----CCCCeEEEecCCCCCCe-EEEEEEEcCCCCceeEeeE
Q psy12725          1 MLALKFFTCKYEGN---------PVKTISWMKDGKPVPD----HNEPVFRIDSVRKEDKG-MYQCVIRNEQESAQASGEL   66 (119)
Q Consensus         1 ~g~~~~l~c~~~~~---------~~~~v~w~~~~~~~~~----~~~~~l~~~~~~~~d~g-~y~C~~~~~~~~~~~~~~~   66 (119)
                      .|+.+.|.|.+.+.         |.+.+.|+|++..+..    .....|.|.+++.+|.| .|.|.+.+..+........
T Consensus        43 eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~  122 (329)
T 3oq3_B           43 LGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVR  122 (329)
T ss_dssp             TTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTTEETTEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEE
T ss_pred             CCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCceeecceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEE
Confidence            38999999999874         5578999999876532    23578999999999999 9999999987543332222


Q ss_pred             EEeeecCCCeeeecCCccccCCCCcEEEEeEEccCC-CCeEEEEECCEEcc
Q psy12725         67 KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNP-TPEISWYLDGKKLV  116 (119)
Q Consensus        67 ~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~~~~~~  116 (119)
                      .+.  ..+|.+........+.+|+.+.|.|.+.+.| .+.+.|++++..+.
T Consensus       123 ~v~--~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~  171 (329)
T 3oq3_B          123 SHI--RKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELI  171 (329)
T ss_dssp             EEE--CCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECC
T ss_pred             EEE--cCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCC
Confidence            221  2344444333344567899999999999998 88999999999874

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.77  E-value=7.8e-19  Score=98.59  Aligned_cols=117  Identities=15%  Similarity=0.291  Sum_probs=79.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccC--------------CC-------CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPV--------------PD-------HNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~--------------~~-------~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.++|.|.+.+.+.+.+.|||+.  ..+              ..       .....|.|.+++.+|+|.|.|.+.+..
T Consensus        13 ~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~   92 (212)
T 1nfd_E           13 VGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCLSSYGD   92 (212)
T ss_dssp             TTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEEEEETT
T ss_pred             CCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEEEEEEccc
Confidence            4899999999987777789999853  221              00       012379999999999999999999632


Q ss_pred             CC-c--eeEeeEEEeee-cCCCeeeecCCccccCCCCcEEEEeEEccC-CC-CeEEEEECCEEccc
Q psy12725         58 ES-A--QASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGN-PT-PEISWYLDGKKLVN  117 (119)
Q Consensus        58 ~~-~--~~~~~~~v~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~~  117 (119)
                      .. .  .....+.+... ..+|.+...+......+|+.+.|.|.+.+. |+ +.+.|+++|..+..
T Consensus        93 ~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~  158 (212)
T 1nfd_E           93 NNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATIND  158 (212)
T ss_dssp             TTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECS
T ss_pred             CcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCC
Confidence            11 1  11233443221 135666554443344578899999999877 54 68999999988753

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.77  E-value=1.3e-17  Score=95.53  Aligned_cols=113  Identities=19%  Similarity=0.343  Sum_probs=77.7

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--ccC-------------------CC---------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KPV-------------------PD---------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~~-------------------~~---------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.|+|.|.+.+.|  .+.+.|+|+.  ...                   ..         .....|.|.+++.+|+|.
T Consensus        16 ~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~   95 (247)
T 2ghw_B           16 PGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAV   95 (247)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             cCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCHHHCEE
Confidence            489999999998876  5789999842  110                   00         012369999999999999


Q ss_pred             EEEEEEcCCCC--ceeEeeEEEeee------------cCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEE--CC
Q psy12725         49 YQCVIRNEQES--AQASGELKLGGR------------FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL--DG  112 (119)
Q Consensus        49 y~C~~~~~~~~--~~~~~~~~v~~~------------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~--~~  112 (119)
                      |.|.+.+....  ......+.|...            ..++.+...+....+.+|+.+.|.|.+.+.+.+.+.|++  ++
T Consensus        96 Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g  175 (247)
T 2ghw_B           96 YYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLAWYQQKPG  175 (247)
T ss_dssp             EEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTT
T ss_pred             EEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEEEEEECCC
Confidence            99999986211  112234444321            113334444445567899999999999999888999998  55


Q ss_pred             E
Q psy12725        113 K  113 (119)
Q Consensus       113 ~  113 (119)
                      .
T Consensus       176 ~  176 (247)
T 2ghw_B          176 Q  176 (247)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.77  E-value=1.6e-17  Score=96.85  Aligned_cols=117  Identities=21%  Similarity=0.184  Sum_probs=86.1

Q ss_pred             CCccEEEEEEeccCCCCe-eEEee-CCccCCCC------CCCeEEEecCCCCCCeEEEEEEEc-CCCCceeEeeEEEeee
Q psy12725          1 MLALKFFTCKYEGNPVKT-ISWMK-DGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRN-EQESAQASGELKLGGR   71 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~-v~w~~-~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~-~~~~~~~~~~~~v~~~   71 (119)
                      .|+.+.|.|.+.+.+.+. +.|++ ++..+...      ....|.|..++..|.|.|.|.+.+ ..+.......+.+...
T Consensus       103 ~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~  182 (289)
T 3ejj_X          103 EGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRV  182 (289)
T ss_dssp             TTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESS
T ss_pred             cCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEEC
Confidence            388999999998866554 99986 55544322      346799999999999999999984 3222223344444321


Q ss_pred             -cCCCeeeecCCccccCCCCcEEEEeEEcc-CCCCeEEEEECCEEccc
Q psy12725         72 -FDPPVIKESFSDETLNPGPNYYFKCIASG-NPTPEISWYLDGKKLVN  117 (119)
Q Consensus        72 -~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~~  117 (119)
                       ..+|.+...+....+..|+.+.|.|.+.+ .|.+.+.|++++..+..
T Consensus       183 ~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~  230 (289)
T 3ejj_X          183 HPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEI  230 (289)
T ss_dssp             CCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCC
T ss_pred             CCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeec
Confidence             14677777666666789999999999988 68889999999987753

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.77  E-value=1.6e-18  Score=95.44  Aligned_cols=103  Identities=17%  Similarity=0.259  Sum_probs=77.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCcc--CC------------------------CCCCCeEEEecCCCCCCeEEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKP--VP------------------------DHNEPVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~--~~------------------------~~~~~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      .|+.+.|.|.+.+.+.+.+.|++++..  +.                        ......|.|.+++..|.|.|.|.+.
T Consensus         9 ~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~   88 (184)
T 2ny1_B            9 KGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVE   88 (184)
T ss_dssp             TTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEEET
T ss_pred             CCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEEEEEEE
Confidence            489999999998888889999998752  10                        0114559999999999999999998


Q ss_pred             cCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEE
Q psy12725         55 NEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK  114 (119)
Q Consensus        55 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~  114 (119)
                      +..+    ...+.+..      +.. +....+.+|+.+.|.|.+.+.|.+.+.|++++..
T Consensus        89 ~~~~----~~~l~V~~------~~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~  137 (184)
T 2ny1_B           89 DQKE----EVQLLVFG------LTA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGK  137 (184)
T ss_dssp             TEEE----EEEEEEEE------EEE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSC
T ss_pred             cCCC----cEEEEEEE------ecC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCc
Confidence            7632    33333321      111 2334578899999999998889999999998754

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.77  E-value=3e-18  Score=97.14  Aligned_cols=107  Identities=18%  Similarity=0.298  Sum_probs=73.2

Q ss_pred             CCccEEEEEEeccCCCC---eeEEeeCCccCC-----------C------------------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNPVK---TISWMKDGKPVP-----------D------------------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~---~v~w~~~~~~~~-----------~------------------~~~~~l~~~~~~~~d~g~   48 (119)
                      +|+.|.|.|.+.+.+.+   .|.|+|++....           .                  .....|.|.+++.+|+|.
T Consensus        18 ~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~   97 (226)
T 4f80_A           18 VGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGK   97 (226)
T ss_dssp             TTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCGGGCEE
T ss_pred             cCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCchHHCee
Confidence            49999999999765433   699998753210           0                  012469999999999999


Q ss_pred             EEEEEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEcc-CCCCeEEEEECC
Q psy12725         49 YQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTPEISWYLDG  112 (119)
Q Consensus        49 y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~~  112 (119)
                      |.|.+.+..+....  .+.+....   ..........+.+|+.+.+.|.+.+ .|.|.+.|++++
T Consensus        98 Y~C~a~n~~~~~~~--~v~~~~~~---~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~  157 (226)
T 4f80_A           98 YLCYFQDGDFYEKA--LVELKVAA---LGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNK  157 (226)
T ss_dssp             EEEEEEETTEEEEE--EEEEEEEB---CCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTT
T ss_pred             EEEEEECCCcEEEE--EEEEeecc---ceecccceeeeccCCceeeEEEeccCCCCCEEEEEECC
Confidence            99999997544433  33333221   1111122334567899999999877 488999999854

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.77  E-value=3.2e-19  Score=101.43  Aligned_cols=117  Identities=16%  Similarity=0.284  Sum_probs=66.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCc--cC-----------C-CC---------CCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGK--PV-----------P-DH---------NEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~--~~-----------~-~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.|.|.|.+.+.+.+.+.|+|++.  ..           . ..         ....|.|.+++.+|+|.|.|.+.+..
T Consensus        37 ~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~  116 (233)
T 3bqu_C           37 IGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADYYCLQSDNL  116 (233)
T ss_dssp             ----CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEEEEEECSSS
T ss_pred             cCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            38899999999887777899998532  11           0 00         01268999999999999999998764


Q ss_pred             CC-ceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725         58 ES-AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLVN  117 (119)
Q Consensus        58 ~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~  117 (119)
                      +. ......+.+.....+|.+...+.......|+.+.|.|.+.+. |.+ .+.|+++|..+..
T Consensus       117 ~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~  179 (233)
T 3bqu_C          117 PYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQN  179 (233)
T ss_dssp             SCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----C
T ss_pred             ceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCC
Confidence            32 122234444332235666654433333468899999999885 443 6999999987653

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.77  E-value=4.8e-18  Score=95.61  Aligned_cols=109  Identities=21%  Similarity=0.213  Sum_probs=75.3

Q ss_pred             ccEEEEEEeccCCCCeeEEeeC---CccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeE--eeEEEeee
Q psy12725          3 ALKFFTCKYEGNPVKTISWMKD---GKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS--GELKLGGR   71 (119)
Q Consensus         3 ~~~~l~c~~~~~~~~~v~w~~~---~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~--~~~~v~~~   71 (119)
                      +.+.|.|.+.+ |.+.+.|++.   +..+...      ....|.|.+++.+|.|.|.|.+.+..... .+  ..+.+.. 
T Consensus        25 ~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~-~s~~~~l~v~~-  101 (213)
T 2x1w_L           25 KTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESY-QSIMYIVVVVG-  101 (213)
T ss_dssp             CEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CE-ECCCEEEEECB-
T ss_pred             ccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeE-EEEEEEEEEeC-
Confidence            99999999976 7789999884   5544322      34679999999999999999998753322 22  3333322 


Q ss_pred             cCCCeeeecCCcc-ccCCCCcEEEEeEEccCCC--CeEEEEECCEE
Q psy12725         72 FDPPVIKESFSDE-TLNPGPNYYFKCIASGNPT--PEISWYLDGKK  114 (119)
Q Consensus        72 ~~~~~~~~~~~~~-~~~~g~~~~l~C~~~~~p~--~~~~W~~~~~~  114 (119)
                      ..+|.+...+... .+.+|+.+.|.|.+.+.|.  +.+.|++++..
T Consensus       102 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~  147 (213)
T 2x1w_L          102 YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSK  147 (213)
T ss_dssp             CCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSS
T ss_pred             CcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCc
Confidence            1234444444433 6789999999999988653  47999998765

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.76  E-value=2.1e-17  Score=97.76  Aligned_cols=113  Identities=12%  Similarity=0.169  Sum_probs=83.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC----------CCCeEEEecCCCCCCeEEEEEEEcCCCCc-----eeEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESA-----QASGE   65 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~-----~~~~~   65 (119)
                      .|+.++|.|.+.+ +.+.+.|++++..+...          ....|.|..++.+|.|.|.|.+.|..+..     .....
T Consensus       132 ~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~  210 (316)
T 3vh8_G          132 SGERVILQCWSDI-MFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLD  210 (316)
T ss_dssp             TTCCEEEEEEESS-CCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEE
T ss_pred             CCCeEEEEEcCCC-CCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEE
Confidence            3899999999954 56789999998766321          23578999999999999999999876532     22334


Q ss_pred             EEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         66 LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        66 ~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      +.+.....+|.+...+. ..+.+|+.+.|.|.+. .+.+.+.|+++|..+.
T Consensus       211 l~V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~-~~~~~~~W~k~g~~~~  259 (316)
T 3vh8_G          211 IVVTGPYEKPSLSAQPG-PKVQAGESVTLSCSSR-SSYDMYHLSREGGAHE  259 (316)
T ss_dssp             EEEECSSCCCEEEEESC-SCCCTTSCCEEEEEES-SCCSEEEEEETTSSCC
T ss_pred             EEecCCCCCCeEEeCCC-CeecCCCcEEEEEECC-CCCcEEEEEECCCcCC
Confidence            44443334566665543 3678999999999986 4677999999987543

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.76  E-value=3e-19  Score=105.28  Aligned_cols=114  Identities=14%  Similarity=0.255  Sum_probs=81.3

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeec
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRF   72 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~   72 (119)
                      .|+.+.|.|.+.+. |.+.+.|++++..+...       ....|.|.+++..|.|.|.|.+.+..+.......+.+.   
T Consensus        20 ~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~---   96 (317)
T 2y25_A           20 GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE---   96 (317)
T ss_dssp             TTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSSCEEEEEECCSTH---
T ss_pred             CCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCCcEEEEEEEEEe---
Confidence            48999999999887 77899999999876532       23589999999999999999999886544333322221   


Q ss_pred             CCCeeeecCCccccCCCCcEEEEeEEcc----------CCCCeEEEEECCEEccc
Q psy12725         73 DPPVIKESFSDETLNPGPNYYFKCIASG----------NPTPEISWYLDGKKLVN  117 (119)
Q Consensus        73 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~----------~p~~~~~W~~~~~~~~~  117 (119)
                      .+|.+...+....+..|+.+.+.|.+.+          .|.+.+.|++++..+..
T Consensus        97 ~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~  151 (317)
T 2y25_A           97 AFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY  151 (317)
T ss_dssp             HHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCC
T ss_pred             cCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCC
Confidence            1222222222334567777888887665          67889999999887653

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.76  E-value=1e-17  Score=96.08  Aligned_cols=109  Identities=17%  Similarity=0.299  Sum_probs=74.4

Q ss_pred             CCccEEEEEEeccCCCCe-----eEEeeCCccCC-----------------C----------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNPVKT-----ISWMKDGKPVP-----------------D----------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~-----v~w~~~~~~~~-----------------~----------~~~~~l~~~~~~~~d~g~   48 (119)
                      +|+.+.|.|.+.+.|.+.     +.|++++....                 .          ....+|.|.+++..|+|.
T Consensus        17 ~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D~G~   96 (248)
T 3pv7_A           17 LNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGE   96 (248)
T ss_dssp             TTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCCGGGCEE
T ss_pred             CCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCCHHHCeE
Confidence            489999999998776554     99998632211                 0          123459999999999999


Q ss_pred             EEEEEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEcc-CCCC-eEEEEECCE
Q psy12725         49 YQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTP-EISWYLDGK  113 (119)
Q Consensus        49 y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~  113 (119)
                      |.|.+.+..+.......+.|.   .+|.+...+. .....|..+.|.|.+.+ .|.+ .+.|+++|.
T Consensus        97 Y~C~~~~~~~~~~~~~~L~V~---~~P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~  159 (248)
T 3pv7_A           97 YRCEVVVTPLKAQGTVQLEVV---ASPASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEKQTQ  159 (248)
T ss_dssp             EEEEEEETTEEEEEEEEEEEE---BCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECS
T ss_pred             EEEEEEeCCccceeEEEEEEe---cCCceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEECCc
Confidence            999999875444444444443   3666665544 23456778889999988 6888 999999885

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.76  E-value=6.9e-18  Score=96.67  Aligned_cols=117  Identities=18%  Similarity=0.317  Sum_probs=79.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEee----------------CCccCCC-------------CCCCeEEEecCCCCCCeEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMK----------------DGKPVPD-------------HNEPVFRIDSVRKEDKGMYQC   51 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~----------------~~~~~~~-------------~~~~~l~~~~~~~~d~g~y~C   51 (119)
                      .|+.|.|.|.+.+.+.+.+.|||                ++.....             .....|.|.+++.+|+|.|.|
T Consensus        15 ~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   94 (246)
T 4dzb_B           15 SGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFYIC   94 (246)
T ss_dssp             TTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             CCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHHHCEEEEE
Confidence            48999999999988888999998                2211111             112379999999999999999


Q ss_pred             EEEcCCC----CceeEeeEEEee---ecCCCeeeec-CCccccCCCCcEEEEeEEccCCCC--eEEEEECCEEccc
Q psy12725         52 VIRNEQE----SAQASGELKLGG---RFDPPVIKES-FSDETLNPGPNYYFKCIASGNPTP--EISWYLDGKKLVN  117 (119)
Q Consensus        52 ~~~~~~~----~~~~~~~~~v~~---~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~  117 (119)
                      .+.+..+    .......+.+..   ...+|.+... +....+..|+.+.|.|.+.+.+++  .+.|+++|..+..
T Consensus        95 ~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~  170 (246)
T 4dzb_B           95 SARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS  170 (246)
T ss_dssp             EECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             EEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEECCC
Confidence            9986532    111223344432   1124554433 233345568999999999887654  8999999988754

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.76  E-value=9.5e-18  Score=96.26  Aligned_cols=112  Identities=15%  Similarity=0.186  Sum_probs=80.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCC--------CCCCCeEEEecCCCCCCeEEEEEEEcCCCCce--eEeeEEEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVP--------DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ--ASGELKLGG   70 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~--------~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~--~~~~~~v~~   70 (119)
                      .|+.|+|.|.+.+ +...+.|||++..+.        ......|.|.+++..|.|.|.|.+.+..+...  ....+.|..
T Consensus        20 ~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~   98 (242)
T 1p6f_A           20 KEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTE   98 (242)
T ss_dssp             TTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred             CCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeec
Confidence            4899999999875 456899999987542        12346799999999999999999977532212  223444433


Q ss_pred             ecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEc
Q psy12725         71 RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL  115 (119)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~  115 (119)
                      ...+|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+|+|..+
T Consensus        99 ~~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~  141 (242)
T 1p6f_A           99 MYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSS  141 (242)
T ss_dssp             CSCCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSC
T ss_pred             ccCCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCcc
Confidence            33456666544 3457899999999998654 4589999998654

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.76  E-value=3.6e-18  Score=97.10  Aligned_cols=117  Identities=15%  Similarity=0.219  Sum_probs=77.3

Q ss_pred             CCccEEEEEEeccCC-CC-eeEEeeCC--ccC----------C--CC---------CCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNP-VK-TISWMKDG--KPV----------P--DH---------NEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~-~~-~v~w~~~~--~~~----------~--~~---------~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.+.+.+ .+ .+.|||++  ..+          .  ..         ....|.|.+++.+|+|.|.|.+.+
T Consensus        33 ~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~  112 (234)
T 2j6e_L           33 PGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCATWD  112 (234)
T ss_dssp             TTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSEEEEEEEE
T ss_pred             CCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEEEEEEEEc
Confidence            489999999998754 34 69999863  211          0  00         123799999999999999999998


Q ss_pred             CCCC---ceeEeeEEEeee-cCCCeeeecCCccccCCCCcEEEEeEEccCCC--CeEEEEECCEEccc
Q psy12725         56 EQES---AQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGNPT--PEISWYLDGKKLVN  117 (119)
Q Consensus        56 ~~~~---~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~~~~~~  117 (119)
                      ..+.   ......+.|... ..+|.+...+.......|+.+.|.|.+.+.++  +.+.|+++|..+..
T Consensus       113 ~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~  180 (234)
T 2j6e_L          113 DSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKA  180 (234)
T ss_dssp             TTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCS
T ss_pred             CCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCC
Confidence            7652   111233333211 13455554333323345889999999988643  38999999998753

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.76  E-value=2.7e-18  Score=107.45  Aligned_cols=106  Identities=20%  Similarity=0.350  Sum_probs=81.4

Q ss_pred             CCccEEEEEEeccCCCCe-eEEeeCCccCCCCC--------------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEee
Q psy12725          1 MLALKFFTCKYEGNPVKT-ISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE   65 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~-v~w~~~~~~~~~~~--------------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~   65 (119)
                      .|+.+.|.|.+.+.|.+. +.|++++..+....              ...|.|.+++.+|.|.|+|.+.|..+.......
T Consensus       327 ~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  406 (524)
T 2ec8_A          327 DGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFN  406 (524)
T ss_dssp             TTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             CCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEE
Confidence            488999999999999888 99999988765432              247999999999999999999999877655555


Q ss_pred             EEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEc
Q psy12725         66 LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL  115 (119)
Q Consensus        66 ~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~  115 (119)
                      +.+.   .+|.+...+.   ..+|   .|.|.+.|.|.|.+.|++++..+
T Consensus       407 l~V~---~~P~i~~~~~---~~~g---~l~C~~~g~P~p~i~W~~~~~~~  447 (524)
T 2ec8_A          407 VYVN---TKPEILTYDR---LVNG---MLQCVAAGFPEPTIDWYFCPGTE  447 (524)
T ss_dssp             EEEC---EEEEEEEEEC---CSSS---CEEEEEEEESCCEEECCCC----
T ss_pred             EEEe---cCCeEeeccc---CcCc---EEEEEEEeecCCEEEEEECCCcc
Confidence            5553   3565554432   3445   99999999999999999997654

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.76  E-value=6.4e-18  Score=106.18  Aligned_cols=103  Identities=18%  Similarity=0.270  Sum_probs=77.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP   75 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~   75 (119)
                      .|+.+.|.|.+.+.|.+.+.|+|++..+...     ....|.|..++.+|.|.|+|.+.|..+.......+.|.   .+|
T Consensus       340 ~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~---~~P  416 (527)
T 3qs9_E          340 QYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR---RKP  416 (527)
T ss_dssp             TTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC-----CCC
T ss_pred             CCCeEEEEEEEEecCCCEEEEEECCEECcCCcccccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEe---cCC
Confidence            3888999999999999999999999877432     35689999999999999999999987665555444443   467


Q ss_pred             eeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEE
Q psy12725         76 VIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK  114 (119)
Q Consensus        76 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~  114 (119)
                      .+...+.        ...|.|.+.|.|.|.+.|++++..
T Consensus       417 ~i~~~~~--------~~~l~C~a~g~P~p~i~W~~~~~~  447 (527)
T 3qs9_E          417 QVLAEAS--------ASQASCFSDGYPLPSWTWKKCSDK  447 (527)
T ss_dssp             EEEECCC--------CE---EEEECSSCCEEEEECCC--
T ss_pred             eEEEeCC--------CCEEEEEEEEEcCCeEEEEECCCC
Confidence            7665432        235799999999999999987543

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.76  E-value=1.5e-17  Score=90.90  Aligned_cols=105  Identities=18%  Similarity=0.200  Sum_probs=76.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCC-------------------CCCCCeEEEecCCCCCCeEEEEEEEcCCCCce
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVP-------------------DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ   61 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~-------------------~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~   61 (119)
                      +|+.|+|.|.+.. |.+.|.|++++..+.                   ...+.+|.|.+++..|+|.|.|.+.+..+  .
T Consensus         9 ~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~~--~   85 (171)
T 1ccz_A            9 VYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD--T   85 (171)
T ss_dssp             TTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCCS--C
T ss_pred             cCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCCCC--c
Confidence            4899999999854 788999998764210                   01346899999999999999999988765  4


Q ss_pred             eEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         62 ASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        62 ~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      ..+.+.|......|.+......        ..|.|.+.+.|.|.+.|++++..+.
T Consensus        86 ~~~~L~V~~~~~~p~i~~~~~~--------~~L~C~~~~~p~p~i~W~~~~~~l~  132 (171)
T 1ccz_A           86 MKFFLYVLEMVSKPMIYWECSN--------ATLTCEVLEGTDVELKLYQGKEHLR  132 (171)
T ss_dssp             EEEEEEEECCCCCCEEEEETTT--------TEEEEECSSCSSCEEEEEETTEEEE
T ss_pred             EEEEEEEECcCCCCEEEEecCC--------cEEEEEeCCCCCcEEEEEECCEECc
Confidence            4555555433233444332211        2799999888889999999998764

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.76  E-value=2.3e-17  Score=97.55  Aligned_cols=112  Identities=12%  Similarity=0.175  Sum_probs=81.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC-----CCCCeEEEecCCCCCCeEEEEEEEcCCC-----CceeEeeEEEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQE-----SAQASGELKLGG   70 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~-----~~~~~l~~~~~~~~d~g~y~C~~~~~~~-----~~~~~~~~~v~~   70 (119)
                      .|+.++|.|.+.+. .+.+.|+|++..+..     .....|.|.+++.+|.|.|.|.+.+...     .......+.+..
T Consensus        37 ~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~  115 (316)
T 3vh8_G           37 RGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTG  115 (316)
T ss_dssp             TTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEEC
T ss_pred             CCCCEEEEEEccCC-CceEEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEec
Confidence            48999999999886 678999999877543     2467899999999999999999986422     112233444433


Q ss_pred             ecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEc
Q psy12725         71 RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL  115 (119)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~  115 (119)
                      ...+|.+...+.. .+.+|+.+.|.|.+. .+.+.+.|++++..+
T Consensus       116 ~~~~p~~~~~~~~-~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~  158 (316)
T 3vh8_G          116 NHRKPSLLAHPGP-LVKSGERVILQCWSD-IMFEHFFLHKEGISK  158 (316)
T ss_dssp             SSCCCEEEEESCS-EEETTCCEEEEEEES-SCCSEEEEEETTCCS
T ss_pred             CCCCCeEEecCCC-ccCCCCeEEEEEcCC-CCCcEEEEEECCCcc
Confidence            2335666554443 378999999999984 456689999998765

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.76  E-value=1.5e-17  Score=97.19  Aligned_cols=113  Identities=17%  Similarity=0.260  Sum_probs=86.1

Q ss_pred             CCccEEEEEEeccCCC-CeeEEe-eCCccCCCC------CCCeEEEecCCCCCCe-EEEEEEEcCCCCcee-EeeEEEee
Q psy12725          1 MLALKFFTCKYEGNPV-KTISWM-KDGKPVPDH------NEPVFRIDSVRKEDKG-MYQCVIRNEQESAQA-SGELKLGG   70 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~-~~v~w~-~~~~~~~~~------~~~~l~~~~~~~~d~g-~y~C~~~~~~~~~~~-~~~~~v~~   70 (119)
                      .|+.+.|.|.+.+ |. +.+.|+ +++..+...      ....|.|.+++..|.| .|.|.+.+..+.... ...+.+..
T Consensus       105 ~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~  183 (290)
T 2o26_X          105 EDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVRE  183 (290)
T ss_dssp             TTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             cCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEe
Confidence            3889999999986 77 899995 577766432      3468999999999999 999999997432211 23444431


Q ss_pred             -ecCCCeeeecCCccccCCCCcEEEEeEEccCCCCe-EEEEECCEE
Q psy12725         71 -RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE-ISWYLDGKK  114 (119)
Q Consensus        71 -~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~W~~~~~~  114 (119)
                       ...+|.+...+....+..|+.+.|.|.+.+.|.|. +.|++++..
T Consensus       184 ~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~  229 (290)
T 2o26_X          184 AIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQ  229 (290)
T ss_dssp             CCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSS
T ss_pred             CCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCC
Confidence             12577777666666888999999999999999886 999998865

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.76  E-value=9.7e-18  Score=94.80  Aligned_cols=115  Identities=15%  Similarity=0.306  Sum_probs=79.6

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--ccC---------------------CC---------CCCCeEEEecCCCCCC
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KPV---------------------PD---------HNEPVFRIDSVRKEDK   46 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~~---------------------~~---------~~~~~l~~~~~~~~d~   46 (119)
                      .|+.++|.|.+.+.+  .+.+.|||..  ...                     ..         .....|.|.+++.+|+
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   93 (222)
T 1q9r_B           14 SGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRAEDS   93 (222)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcCCcccC
Confidence            489999999998754  6789999843  110                     00         0123799999999999


Q ss_pred             eEEEEEEEcCCC-----CceeEeeEEEeee-cCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEEc
Q psy12725         47 GMYQCVIRNEQE-----SAQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKL  115 (119)
Q Consensus        47 g~y~C~~~~~~~-----~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~  115 (119)
                      |.|.|.+.+..+     .......+.+... ..+|.+...+....+..|+.+.|.|.+.+. |.| .+.|+++|..+
T Consensus        94 G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  170 (222)
T 1q9r_B           94 ATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS  170 (222)
T ss_dssp             EEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             eEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecCCeEc
Confidence            999999988643     1222344554421 124555544433346689999999999885 877 99999998654

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.76  E-value=4.1e-17  Score=106.55  Aligned_cols=113  Identities=27%  Similarity=0.552  Sum_probs=89.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCCC--------------CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHNE--------------PVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL   66 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~--------------~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~   66 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+.....              ..|.|..++..|.|.|.|.+.|..+.......+
T Consensus       443 ~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  522 (816)
T 3dmk_A          443 PGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKL  522 (816)
T ss_dssp             SSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEE
Confidence            388999999999999999999999887643221              258899999999999999999987665555555


Q ss_pred             EEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         67 KLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        67 ~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+.   .+|.+.. .....+..|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus       523 ~V~---~~p~~~~-~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~  569 (816)
T 3dmk_A          523 NVY---GLPYIRQ-MEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPI  569 (816)
T ss_dssp             EEC---SSCEECC-CCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCC
T ss_pred             EEe---cCCeeEc-cCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEccc
Confidence            553   3454432 3344577899999999999988889999999988753

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.75  E-value=9.1e-18  Score=98.79  Aligned_cols=115  Identities=15%  Similarity=0.204  Sum_probs=84.6

Q ss_pred             CccEEEEEEec-cCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeee
Q psy12725          2 LALKFFTCKYE-GNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGR   71 (119)
Q Consensus         2 g~~~~l~c~~~-~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~   71 (119)
                      |+.+.|.|... +.|.+.+.|+|++..+...         ....|.|.+++..|.|.|.|.+.+..+... +..+.+...
T Consensus        16 g~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~l~v~~~   94 (312)
T 2y23_A           16 DGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYLIDEEEL   94 (312)
T ss_dssp             TCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEEECHHHH
T ss_pred             CCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEEEEEeee
Confidence            78888888886 4588899999999887532         125799999999999999999998765332 333332110


Q ss_pred             c---------CCCeeeecCC-ccccCCCCcEEEEeEEc-cCCCCeEEEEECCEEccc
Q psy12725         72 F---------DPPVIKESFS-DETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        72 ~---------~~~~~~~~~~-~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~~~  117 (119)
                      .         .+|.+...+. ...+.+|+.+.|.|.+. +.|.+.+.|++++..+..
T Consensus        95 ~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~  151 (312)
T 2y23_A           95 KRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFE  151 (312)
T ss_dssp             HHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECS
T ss_pred             eeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECee
Confidence            0         0344333332 55678999999999998 788899999999988764

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.75  E-value=4e-17  Score=93.06  Aligned_cols=109  Identities=13%  Similarity=0.277  Sum_probs=75.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--cc-----------------CC--------CCCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KP-----------------VP--------DHNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~-----------------~~--------~~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|. .+.+.+.+.|+|+.  ..                 ..        ......|.|.+++.+|+|.|.|.+
T Consensus        14 ~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~   92 (238)
T 2p1y_A           14 TGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSVYFCAS   92 (238)
T ss_dssp             TTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccCeeEEEEE
Confidence            4899999999 67788999999851  10                 00        012357999999999999999999


Q ss_pred             EcCCCC---ce--eEeeEEEeeecCCC-----------eeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECC
Q psy12725         54 RNEQES---AQ--ASGELKLGGRFDPP-----------VIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG  112 (119)
Q Consensus        54 ~~~~~~---~~--~~~~~~v~~~~~~~-----------~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~  112 (119)
                      .+..+.   ..  ....+.+..  .++           .+...+....+.+|+.+.|.|.+.+.|.+.+.|++++
T Consensus        93 ~~~~g~~~~~~~~~~~~l~V~~--~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~  165 (238)
T 2p1y_A           93 GDLGQTNERLFFGHGTKLSVLG--SADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQF  165 (238)
T ss_dssp             EC------CEEECCCEEEEEEC--CCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEEC
T ss_pred             EeCCCccccceeCCCeEEEEec--cCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEEC
Confidence            986431   11  122333322  222           3444455556789999999999999888999999853

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.75  E-value=1.1e-17  Score=100.02  Aligned_cols=115  Identities=16%  Similarity=0.222  Sum_probs=83.3

Q ss_pred             CCccEEEEEEeccCCC-----------CeeEEeeCCccCC----C----------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPV-----------KTISWMKDGKPVP----D----------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~-----------~~v~w~~~~~~~~----~----------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.+.|.|.+.+.|.           +.+.|++++....    .          .....|.|.+++..|.|.|.|.+.+
T Consensus        21 ~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n  100 (349)
T 4dep_C           21 EDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRN  100 (349)
T ss_dssp             TTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEEEEEEEEC
T ss_pred             cCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEEEEEEEec
Confidence            4899999999987553           8999999874211    0          1246799999999999999999999


Q ss_pred             CCCCceeEeeEEEeeecCCCeee---ecCCccccCCCCcEEEEeEE-----ccCCCCeEEEEECCEEccc
Q psy12725         56 EQESAQASGELKLGGRFDPPVIK---ESFSDETLNPGPNYYFKCIA-----SGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        56 ~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~g~~~~l~C~~-----~~~p~~~~~W~~~~~~~~~  117 (119)
                      ..+.......+.+..  .++...   ..+....+..|+.+.|.|.+     .+.|.+.+.|++++..+..
T Consensus       101 ~~~~~~~~~~l~V~~--~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~  168 (349)
T 4dep_C          101 TTYCSKVAFPLEVVQ--KDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQN  168 (349)
T ss_dssp             SSCEEEEEEEEEEEC--CCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCS
T ss_pred             CCceEEEEEEEEEec--CCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCC
Confidence            866555555555543  221111   11223356789999999975     6678899999999998754

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.75  E-value=1.8e-17  Score=91.43  Aligned_cols=107  Identities=21%  Similarity=0.365  Sum_probs=76.5

Q ss_pred             CCccEEEEEEec--cCCCCeeEEee--CCccC----------CC------CCCCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          1 MLALKFFTCKYE--GNPVKTISWMK--DGKPV----------PD------HNEPVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         1 ~g~~~~l~c~~~--~~~~~~v~w~~--~~~~~----------~~------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      +|+.|+|.|...  +.+.+.|.|++  ++..+          ..      ..+.+|.|.+++..|+|.|.|.+.+..+..
T Consensus        13 ~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n~~g~~   92 (182)
T 1hnf_A           13 LGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKN   92 (182)
T ss_dssp             TTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEEETTSCE
T ss_pred             cCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEEeCCCce
Confidence            589999999442  23467899999  77654          11      134689999999999999999999876654


Q ss_pred             ee--EeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEc
Q psy12725         61 QA--SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL  115 (119)
Q Consensus        61 ~~--~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~  115 (119)
                      ..  .+.+.|......|.+...        +..+.|.|.+.+.|.+.+.|+++|..+
T Consensus        93 ~~~~~~~L~V~~~~~~P~i~~~--------~~~v~L~C~~~~~p~~~~~W~~~g~~l  141 (182)
T 1hnf_A           93 VLEKIFDLKIQERVSKPKISWT--------CINTTLTCEVMNGTDPELNLYQDGKHL  141 (182)
T ss_dssp             EEEEEEEEEEECCCCCCEEEEE--------TTTTEEEEECSSCSSCEEEEEESSCEE
T ss_pred             eEEEEEEEEEcCcCCCCEEEEc--------cCcEEEEeEccCCCCCEEEEEECCEEC
Confidence            33  334444332234444431        236899999998888899999999876

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.75  E-value=8e-19  Score=104.55  Aligned_cols=115  Identities=18%  Similarity=0.263  Sum_probs=85.3

Q ss_pred             CCccEEEEEEec-------cCCCCeeEEeeCCccCC--CC-------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEe
Q psy12725          1 MLALKFFTCKYE-------GNPVKTISWMKDGKPVP--DH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG   64 (119)
Q Consensus         1 ~g~~~~l~c~~~-------~~~~~~v~w~~~~~~~~--~~-------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~   64 (119)
                      .|+.+.|.|.+.       +.|.+.+.|++++..+.  ..       ....|.|.+++..|.|.|.|.+.+..+......
T Consensus        32 ~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~~  111 (339)
T 3o4o_C           32 EGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSI  111 (339)
T ss_dssp             TTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEEEECCEEETTEEEEEEE
T ss_pred             CCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEEEEEEEECCcceEEEEE
Confidence            489999999997       77888999999987632  21       246799999999999999999998765444445


Q ss_pred             eEEEeeecCCCee-eecCCccccCCCCcEEEEeE-----EccCCCCeEEEEECCEEccc
Q psy12725         65 ELKLGGRFDPPVI-KESFSDETLNPGPNYYFKCI-----ASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        65 ~~~v~~~~~~~~~-~~~~~~~~~~~g~~~~l~C~-----~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+.+..  .++.. ........+..|+.+.|.|.     +.+.|.+.+.|++++..+..
T Consensus       112 ~l~V~~--~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~  168 (339)
T 3o4o_C          112 ELRVFE--NTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDK  168 (339)
T ss_dssp             EEEEEC--SCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCT
T ss_pred             EEEEEc--CCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCC
Confidence            555432  22111 11122235678999999999     77888899999999987754

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.75  E-value=6.3e-18  Score=94.74  Aligned_cols=105  Identities=23%  Similarity=0.388  Sum_probs=72.0

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCC--CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEee---------
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPD--HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG---------   70 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~--~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~---------   70 (119)
                      |+.++|.|.+   |.+.|.|+|++..+..  .....|.|..++.+|.|.|.|.+.+...   ....+.+..         
T Consensus        18 G~~v~L~C~~---p~~~i~W~k~g~~l~~~~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s---~~~~v~v~~~~~~~~~~~   91 (204)
T 1sy6_A           18 DGSVLLTCDA---EAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKS---KPLQVYYRMGSADDAKKD   91 (204)
T ss_dssp             SSEEEEEECS---CSSEEEEEETTEEEEEEESSCCCEEEEEGGGCCEEEEEEESSSSCC---CCEEEEEEC---------
T ss_pred             CCeEEEEEcC---CCCEEEEEECCEECCCCCCCCCeEEeCCCCcCCCEEEEEEecCCCC---eeEEEEEEEecccccccc
Confidence            8899999998   6789999999987753  3567899999999999999999644321   112222220         


Q ss_pred             -------------------ecCCCeeeecCCccccC-CCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         71 -------------------RFDPPVIKESFSDETLN-PGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        71 -------------------~~~~~~~~~~~~~~~~~-~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                                         ...++.+.. . ...+. +|+.+.|.|.  +.|.|.+.|++++..+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-p~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~  153 (204)
T 1sy6_A           92 AAKKDDAKKDDAKKDGSDGNEEMGGITQ-T-PYKVSISGTTVILTCP--QYPGSEILWQHNDKNIG  153 (204)
T ss_dssp             ---------------------------C-C-CCEEEEETTEEEEECS--CCCSSCEEEEETTEEES
T ss_pred             ccccccccccccccccccccccccceec-C-CceeeecCCcEEEEcC--CCCCCceEEEECCEECC
Confidence                               000111111 1 11233 8999999998  67888999999998764

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.75  E-value=5e-17  Score=101.74  Aligned_cols=114  Identities=15%  Similarity=0.286  Sum_probs=82.4

Q ss_pred             CccEEEEEEeccCCCC--eeEEeeCCccCCCC---------CC------CeEEEecCCCCCCeEEEEEEEcCCCCceeEe
Q psy12725          2 LALKFFTCKYEGNPVK--TISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQESAQASG   64 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~--~v~w~~~~~~~~~~---------~~------~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~   64 (119)
                      |+.+.|.|.+.+.+.+  .+.|+|++..+...         ..      ..|.|..+..+|.|.|+|.+.+..+......
T Consensus       129 g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  208 (523)
T 2rcj_C          129 ANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  208 (523)
T ss_pred             CCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccce
Confidence            7889999999987643  89999998776421         11      2588999999999999999999866544433


Q ss_pred             eEEEe-eecCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEEc
Q psy12725         65 ELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKL  115 (119)
Q Consensus        65 ~~~v~-~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~  115 (119)
                      .+.+. ....+|.+........+.+|+.+.|.|.+.+. |.| .+.|+++|..+
T Consensus       209 ~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~  262 (523)
T 2rcj_C          209 APTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTS  262 (523)
T ss_pred             eeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCccc
Confidence            32211 11235555533333456789999999999886 777 89999998764

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.75  E-value=6.5e-18  Score=94.79  Aligned_cols=113  Identities=17%  Similarity=0.336  Sum_probs=78.9

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--ccC------------------CC---------CCCCeEEEecCCCCCCeEE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KPV------------------PD---------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~~------------------~~---------~~~~~l~~~~~~~~d~g~y   49 (119)
                      .|+.+.|.|.+.+.+  .+.+.|+|+.  ...                  ..         .....|.|.+++.+|+|.|
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y   93 (210)
T 3d9a_H           14 PSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATY   93 (210)
T ss_dssp             TTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCcccCEEE
Confidence            489999999998764  4789999852  211                  00         0123799999999999999


Q ss_pred             EEEEEcCCCCceeEeeEEEeee-cCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEE
Q psy12725         50 QCVIRNEQESAQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKK  114 (119)
Q Consensus        50 ~C~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~  114 (119)
                      .|.+.+.. .......+.+... ..+|.+...+....+..|+.+.|.|.+.+. |.| .+.|++++..
T Consensus        94 ~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~  160 (210)
T 3d9a_H           94 YCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  160 (210)
T ss_dssp             EEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             EEEEecCc-ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcc
Confidence            99998863 2222344444321 124555544434456789999999999887 777 9999998864

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.75  E-value=6.8e-18  Score=100.22  Aligned_cols=113  Identities=16%  Similarity=0.300  Sum_probs=79.0

Q ss_pred             CCccEEEEEEeccCCCC--eeEEeeCCccCCCC--------CC------CeEEEecCCCCCCeEEEEEEEcCCCCc-eeE
Q psy12725          1 MLALKFFTCKYEGNPVK--TISWMKDGKPVPDH--------NE------PVFRIDSVRKEDKGMYQCVIRNEQESA-QAS   63 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~--~v~w~~~~~~~~~~--------~~------~~l~~~~~~~~d~g~y~C~~~~~~~~~-~~~   63 (119)
                      .|+.+.|.|.+.+.+.+  .+.|++++..+...        ..      +.|.+......|.|.|.|.+.|..+.. ...
T Consensus       131 ~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~  210 (327)
T 2wng_A          131 PQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLR  210 (327)
T ss_dssp             TTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEE
T ss_pred             CCCEEEEEEEEeCccCCCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCccc
Confidence            38899999999987655  89999999877532        11      235555555666799999999976542 122


Q ss_pred             eeEEE--eeecCCCeeeecCCccccCCCCcEEEEeEEccCC-CC-eEEEEECCEEcc
Q psy12725         64 GELKL--GGRFDPPVIKESFSDETLNPGPNYYFKCIASGNP-TP-EISWYLDGKKLV  116 (119)
Q Consensus        64 ~~~~v--~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~-~~~W~~~~~~~~  116 (119)
                      ....+  .+ ..+|.+...+..  +.+|+.+.|.|.+.+.+ ++ .+.|++||..+.
T Consensus       211 ~~~~~~~~v-~~~P~i~~~~~~--~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~  264 (327)
T 2wng_A          211 GTANLSETI-RVPPTLEVTQQP--VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSR  264 (327)
T ss_dssp             EEEEGGGTB-CBCCEEEEEEEC--CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEE
T ss_pred             ceEEecccc-CCCCEEEEecCC--cCCCCcEEEEEEEccccCCCcEEEEEECCeEcc
Confidence            22222  22 246666654433  77999999999998864 44 799999999875

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.75  E-value=9.3e-18  Score=103.27  Aligned_cols=112  Identities=16%  Similarity=0.211  Sum_probs=84.3

Q ss_pred             CCccEEEEEEeccCCCCee-----EEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCC
Q psy12725          1 MLALKFFTCKYEGNPVKTI-----SWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP   75 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v-----~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~   75 (119)
                      .|+.+.|.|.+.+ |.+.+     .|+|++..+.......|.|.+++. |.| |.|.+.+..+.......+.+.  ..|.
T Consensus        13 ~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~~~~~~l~i~~v~~-d~g-Y~C~a~~~~~~~~~~~~l~V~--~~P~   87 (450)
T 1z7z_I           13 RGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPGNNRKVYELSNVQE-DSQ-PMCYSNCPDGQSTAKTFLTVY--WTPE   87 (450)
T ss_dssp             TTEEEEEEEECCS-SCCCEEEECSSSCEEECCSSTTTEEEEEEEEECS-CBC-CEEEEEETTEEEEEECEEEEE--BCCS
T ss_pred             cCCcEEEEEEccC-CCcccccccceeeecceEecCCCceEEEEEeccc-CCe-eEEEEeCCCCcceeEEEEEEE--eCCC
Confidence            3899999999998 88888     899988755444456788888877 989 999998654333334445443  2343


Q ss_pred             eeeecCCccccCCCCcEEEEeEEccCCCC---eEEEEECCEEccc
Q psy12725         76 VIKESFSDETLNPGPNYYFKCIASGNPTP---EISWYLDGKKLVN  117 (119)
Q Consensus        76 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~~~~~~~  117 (119)
                      .+...+....+.+|+.+.|.|.+.+.|++   .+.|++++..+..
T Consensus        88 ~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~  132 (450)
T 1z7z_I           88 RVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKR  132 (450)
T ss_dssp             EEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEE
T ss_pred             cceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeec
Confidence            34345555678899999999999998877   8999999988753

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.74  E-value=4e-17  Score=94.21  Aligned_cols=113  Identities=19%  Similarity=0.284  Sum_probs=76.8

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--ccC------------------CC---------CCCCeEEEecCCCCCCeEE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KPV------------------PD---------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~~------------------~~---------~~~~~l~~~~~~~~d~g~y   49 (119)
                      .|+.|+|.|.+.+.+  .+.+.|+|+.  ..+                  ..         .....|.|.+++.+|+|.|
T Consensus        14 ~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y   93 (257)
T 1f3r_B           14 PSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDTGTY   93 (257)
T ss_dssp             TTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTCCEEE
T ss_pred             CCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcccCEEE
Confidence            489999999998874  6789999852  111                  00         1123799999999999999


Q ss_pred             EEEEEcCCC-------Cc--eeEeeEEEeeec------------CCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEE
Q psy12725         50 QCVIRNEQE-------SA--QASGELKLGGRF------------DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISW  108 (119)
Q Consensus        50 ~C~~~~~~~-------~~--~~~~~~~v~~~~------------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W  108 (119)
                      .|.+.+..+       ..  .....+.|....            .++.+...+....+.+|+.+.|.|.+.+.+.+.+.|
T Consensus        94 ~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W  173 (257)
T 1f3r_B           94 YCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINNYLAW  173 (257)
T ss_dssp             EEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCBTCEEE
T ss_pred             EEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCCCcEEE
Confidence            999998742       11  122334443210            011222334445678999999999998888889999


Q ss_pred             EE--CCE
Q psy12725        109 YL--DGK  113 (119)
Q Consensus       109 ~~--~~~  113 (119)
                      ++  +|.
T Consensus       174 ~k~~~g~  180 (257)
T 1f3r_B          174 YQQKLGE  180 (257)
T ss_dssp             EEECTTS
T ss_pred             EEECCCC
Confidence            99  554

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.74  E-value=1.6e-18  Score=104.21  Aligned_cols=110  Identities=9%  Similarity=0.053  Sum_probs=82.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCeeeec
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKES   80 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   80 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+. .....|.|.+++..|.|.|.|.+.+......  ..+.+.+. .+|...  
T Consensus       110 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~--~~~~l~v~-~~p~~~--  183 (363)
T 1wio_A          110 QGQSLTLTLESPPGSSPSVQCRSPRGKNI-QGGKTLSVSQLELQDSGTWTCTVLQNQKKVE--FKIDIVVL-AFQKAS--  183 (363)
T ss_dssp             SBSCEEEEEECCTTCCCCEEEECSSSCEE-EESSEEEECSBCGGGCEECEEEEEETTEEEE--ECCEECEE-CCSCSE--
T ss_pred             cCCCEEEEEEcCCCCCCeEEEEcCCCccc-ccceEEEEeeCChhcCCEEEEEEecCCCeEE--EEEEEEEe-cCCCCC--
Confidence            48999999999888899999999876543 2567899999999999999999998643333  33333332 222221  


Q ss_pred             CCccccCCCCcEEEEeEEcc-----CCCCeEEEEECCEEccc
Q psy12725         81 FSDETLNPGPNYYFKCIASG-----NPTPEISWYLDGKKLVN  117 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~-----~p~~~~~W~~~~~~~~~  117 (119)
                       ....+.+|+.+.|.|.+.+     .|.|.+.|+++|..+..
T Consensus       184 -~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~  224 (363)
T 1wio_A          184 -SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSK  224 (363)
T ss_dssp             -EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCC
T ss_pred             -CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccc
Confidence             2335678999999998776     67789999999876543

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.74  E-value=2.1e-17  Score=97.27  Aligned_cols=113  Identities=17%  Similarity=0.256  Sum_probs=82.5

Q ss_pred             CCccEEEEEEec-cCCCCeeEEeeCCccCCCCC-----------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYE-GNPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~-~~~~~~v~w~~~~~~~~~~~-----------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+. +.|.+.+.|++++..+....           ...|.|.+++..|.|.|.|.+.+....  ....+.+
T Consensus       121 ~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~  198 (312)
T 2y23_A          121 EKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT--NHSTVVL  198 (312)
T ss_dssp             SSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCE--EEEEEEE
T ss_pred             eCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCce--EEEEEEE
Confidence            388999999998 77899999999988765422           123899999999999999999865322  2222332


Q ss_pred             ee------------------ecCCCeeeecCCccccCCCCcEEEEeEEccCCCC-eEEEEECCEEcc
Q psy12725         69 GG------------------RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLV  116 (119)
Q Consensus        69 ~~------------------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~  116 (119)
                      ..                  ...+|.+.... ...+..|+.+.|.|.+.+.|.+ .+.|++++..+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~  264 (312)
T 2y23_A          199 VGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREIS  264 (312)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-EEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEE
T ss_pred             cchhhhhhcccccccccchhhccCCceeecc-eEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECC
Confidence            10                  01124433222 2457799999999999999888 999999999876

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.74  E-value=2.4e-18  Score=101.33  Aligned_cols=114  Identities=18%  Similarity=0.228  Sum_probs=84.6

Q ss_pred             CccEEEEEEe-ccCCCCeeEEeeCCccCCCC-----C-----CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEee
Q psy12725          2 LALKFFTCKY-EGNPVKTISWMKDGKPVPDH-----N-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG   70 (119)
Q Consensus         2 g~~~~l~c~~-~~~~~~~v~w~~~~~~~~~~-----~-----~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~   70 (119)
                      |+.+.|.|.. .+.|.+.+.|++++..+...     .     ...|.+..+...|.|.|+|.+.|..+.......+.+.+
T Consensus       129 ~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V  208 (308)
T 4fom_A          129 NETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDI  208 (308)
T ss_dssp             SCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCC
T ss_pred             CceEEEEEEecCCcCCceEEEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEE
Confidence            6789999976 57789999999998776421     1     13588888899999999999999876655555555444


Q ss_pred             ecCCCeeeecCC-ccccCCCCcEEEEeEEccCCCC-eEEEEECCEEcc
Q psy12725         71 RFDPPVIKESFS-DETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLV  116 (119)
Q Consensus        71 ~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~  116 (119)
                      . .+|.+...+. ...+..|+.+.|.|.+.+.|.| .+.|++++..+.
T Consensus       209 ~-~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~  255 (308)
T 4fom_A          209 Q-YAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWP  255 (308)
T ss_dssp             C-EEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCC
T ss_pred             e-cCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECC
Confidence            2 2455544333 3346678999999999999888 699999887654

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.74  E-value=1.1e-17  Score=100.14  Aligned_cols=114  Identities=18%  Similarity=0.295  Sum_probs=79.4

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeC--CccC-------------------CC---------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKD--GKPV-------------------PD---------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~--~~~~-------------------~~---------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.+.|.|.+.+.  +.+.+.|||+  +..+                   ..         .....|.|.+++.+|+|.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   93 (344)
T 1za6_B           14 PGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRSEDTAV   93 (344)
T ss_dssp             TTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCCcccCEE
Confidence            48999999999876  3678999986  3221                   00         012479999999999999


Q ss_pred             EEEEEEcCCCCceeEeeEEEee-ecCCCeeeecCCccccCCCCcEEEEeEEccC-CC-CeEEEEECCEE
Q psy12725         49 YQCVIRNEQESAQASGELKLGG-RFDPPVIKESFSDETLNPGPNYYFKCIASGN-PT-PEISWYLDGKK  114 (119)
Q Consensus        49 y~C~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~~~~  114 (119)
                      |.|.+.+..........+.+.. ...+|.+...+....+..|+.+.|.|.+.+. |. +.+.|++++..
T Consensus        94 Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~  162 (344)
T 1za6_B           94 YFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALT  162 (344)
T ss_dssp             EEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBC
T ss_pred             EEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCcc
Confidence            9999988543333334455532 1124555444434456789999999999886 54 68999999865

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.74  E-value=8e-19  Score=103.58  Aligned_cols=114  Identities=24%  Similarity=0.386  Sum_probs=85.4

Q ss_pred             CCccEEEEEEeccCC-CCeeEEeeCCccCCC---------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEee
Q psy12725          1 MLALKFFTCKYEGNP-VKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG   70 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~-~~~v~w~~~~~~~~~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~   70 (119)
                      .|+.+.|.|.+.+.+ .+.+.|+|++.....         .....|.|.+++..|.|.|.|.+.+..+.......+.+..
T Consensus        19 ~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~~   98 (315)
T 1itb_B           19 ANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVE   98 (315)
T ss_dssp             TTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCCCEECCCEEEC
T ss_pred             CCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEEEEEEEEEEeC
Confidence            389999999998876 789999999864321         1245799999999999999999998866555444444332


Q ss_pred             ecCCCeeeecC---CccccCCCCcEEEEeEE------ccCCCCeEEEEECCEEcc
Q psy12725         71 RFDPPVIKESF---SDETLNPGPNYYFKCIA------SGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        71 ~~~~~~~~~~~---~~~~~~~g~~~~l~C~~------~~~p~~~~~W~~~~~~~~  116 (119)
                        .+|.+...+   ....+..|+.+.|.|.+      .+.|.+.+.|++++..+.
T Consensus        99 --~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~  151 (315)
T 1itb_B           99 --NEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLL  151 (315)
T ss_dssp             --CCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECC
T ss_pred             --CCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECC
Confidence              344433222   12356789999999998      788889999999999874

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.74  E-value=7.5e-17  Score=90.53  Aligned_cols=111  Identities=22%  Similarity=0.383  Sum_probs=75.9

Q ss_pred             CCccEEEEEEeccC-------CCCeeEEeeCCcc------CC---------C-------------CCCCeEEEecCCCCC
Q psy12725          1 MLALKFFTCKYEGN-------PVKTISWMKDGKP------VP---------D-------------HNEPVFRIDSVRKED   45 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-------~~~~v~w~~~~~~------~~---------~-------------~~~~~l~~~~~~~~d   45 (119)
                      .|+.|.|.|.+.+.       +.+.+.|+|++..      +.         .             ....+|.|.+++.+|
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D   93 (214)
T 2zg1_A           14 EGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMED   93 (214)
T ss_dssp             TTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECSCCGGG
T ss_pred             cCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEccCCHhh
Confidence            48999999998753       4678999997542      10         0             012479999999999


Q ss_pred             CeEEEEEEEcCCCCc----eeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccC----CCCeEEEEECCEE
Q psy12725         46 KGMYQCVIRNEQESA----QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGN----PTPEISWYLDGKK  114 (119)
Q Consensus        46 ~g~y~C~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~----p~~~~~W~~~~~~  114 (119)
                      +|.|.|.+.+..+..    .....+.+.....+|.+.. +  ..+.+|+.+.|.|.+.+.    |.|.+.|++++..
T Consensus        94 ~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~--~~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~  167 (214)
T 2zg1_A           94 TGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-L--EPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALS  167 (214)
T ss_dssp             CEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC-----CCCCTTCCEEEEEECTTCCSCSSCCEEEEESSTTS
T ss_pred             CceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-C--ccccCCCeEEEEEEeccCCCCCCCceEEEeCCCCc
Confidence            999999999864211    1233444433222455443 1  236789999999998764    7789999998754

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.74  E-value=2.3e-17  Score=101.48  Aligned_cols=113  Identities=15%  Similarity=0.208  Sum_probs=81.4

Q ss_pred             CCccEEEEEEeccCCCC---eeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCcee--------E
Q psy12725          1 MLALKFFTCKYEGNPVK---TISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA--------S   63 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~---~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~--------~   63 (119)
                      .|+.+.|.|.+.+.+.+   .|.|+|++..+...      ....|.|..++..|.|.|+|.+.|..+....        .
T Consensus       100 ~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~  179 (450)
T 1z7z_I          100 VGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAP  179 (450)
T ss_dssp             TTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCC
T ss_pred             eCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCc
Confidence            48999999999988777   89999998776421      2357999999999999999999987543221        1


Q ss_pred             eeEEEeee-cCCCeeeecCCccccCCCCcEEEEeEEccC-C--CCeEEEEECCEEcc
Q psy12725         64 GELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGN-P--TPEISWYLDGKKLV  116 (119)
Q Consensus        64 ~~~~v~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p--~~~~~W~~~~~~~~  116 (119)
                      ..+.+... ..+|.+..   ...+.+|+.+.|.|.+.+. |  .+.+.|++++..+.
T Consensus       180 ~~l~v~~~~~~~p~~~~---~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~  233 (450)
T 1z7z_I          180 YQLQTFVLPATPPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN  233 (450)
T ss_dssp             EECEECCCCSSCCEEEC---CSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECC
T ss_pred             cceeeeccCCCCCEecC---ceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCC
Confidence            12222111 11232221   1457789999999999988 6  67999999998764

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.74  E-value=4.6e-17  Score=92.90  Aligned_cols=111  Identities=21%  Similarity=0.353  Sum_probs=77.0

Q ss_pred             CCccEEEEEEeccCC----CCeeEEeeCC--ccCC----------C--C---------CCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNP----VKTISWMKDG--KPVP----------D--H---------NEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~----~~~v~w~~~~--~~~~----------~--~---------~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|.+.+.+    .+.+.|+|+.  ..+.          .  .         ....|.|.+++.+|+|.|.|.+
T Consensus        15 ~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   94 (240)
T 1moe_A           15 LGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATYYCQQ   94 (240)
T ss_dssp             TTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhCEEEEEEE
Confidence            489999999999887    7789999853  2110          0  0         1126999999999999999999


Q ss_pred             EcCCCC-ceeEeeEEEeeec---CCCeeeecCCccccCCCCcEEEEeEEccCCC--CeEEEEEC
Q psy12725         54 RNEQES-AQASGELKLGGRF---DPPVIKESFSDETLNPGPNYYFKCIASGNPT--PEISWYLD  111 (119)
Q Consensus        54 ~~~~~~-~~~~~~~~v~~~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~  111 (119)
                      .+..+. ......+.|....   .++.....+....+.+|+.+.|.|.+.+.|.  +.+.|+++
T Consensus        95 ~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~  158 (240)
T 1moe_A           95 TNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQ  158 (240)
T ss_dssp             CSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEE
Confidence            987433 2233445543321   1122333344556889999999999988763  58999985

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.74  E-value=1e-17  Score=94.55  Aligned_cols=113  Identities=20%  Similarity=0.444  Sum_probs=77.7

Q ss_pred             CCccEEEEEEeccCCC-----CeeEEeeCCccC---------------CC----C------CCCeEEEecCCCCCCeEEE
Q psy12725          1 MLALKFFTCKYEGNPV-----KTISWMKDGKPV---------------PD----H------NEPVFRIDSVRKEDKGMYQ   50 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~-----~~v~w~~~~~~~---------------~~----~------~~~~l~~~~~~~~d~g~y~   50 (119)
                      +|+.+.|.|.+.+.+.     +.+.|++++...               ..    .      ....|.|.+++..|+|.|.
T Consensus         9 ~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~   88 (222)
T 4i0k_A            9 VDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDEGSYT   88 (222)
T ss_dssp             TTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGCSCEE
T ss_pred             CCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccCEEEE
Confidence            4899999999887643     689999976432               00    0      1567999999999999999


Q ss_pred             EEEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEE-ccCCCCeEEEEE-CCEEc
Q psy12725         51 CVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYL-DGKKL  115 (119)
Q Consensus        51 C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~-~~~~~  115 (119)
                      |.+.+.. .......+.+.....+|.+...+ ...+..|+.+.|.|.+ .+.|.+.+.|++ ++..+
T Consensus        89 C~~~~~~-~~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~  153 (222)
T 4i0k_A           89 CFVSIQD-FDSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPL  153 (222)
T ss_dssp             EEEEECC-CCCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBC
T ss_pred             EEEEeCC-CceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccC
Confidence            9999753 33334444444333345555433 3356789999999998 788999999998 45443

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.73  E-value=1.5e-17  Score=100.87  Aligned_cols=112  Identities=24%  Similarity=0.429  Sum_probs=79.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC---------CCCCeEEEe----cCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD---------HNEPVFRID----SVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~---------~~~~~l~~~----~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      .|+.+.|.|.+.+.|.+.+.|+|++..+..         .....+.+.    +++.+|.|.|.|.+.+..+... +..+.
T Consensus        31 ~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~-s~~~~  109 (404)
T 3p3y_A           31 PRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTAL-SNRIR  109 (404)
T ss_dssp             SSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEE-EEEEE
T ss_pred             CCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEEEEEEcCCCeEe-eeeEE
Confidence            388999999999989999999999976532         123444443    6778999999999999865432 23333


Q ss_pred             EeeecCCCeeeecCCccccCCCCcEEEEeEE-ccCCCCeEEEEECCE
Q psy12725         68 LGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGK  113 (119)
Q Consensus        68 v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~  113 (119)
                      +.+...+...........+.+|+.+.|.|.+ .+.|.+.+.|++++.
T Consensus       110 l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~  156 (404)
T 3p3y_A          110 LQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSM  156 (404)
T ss_dssp             EEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTS
T ss_pred             EEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCc
Confidence            3332222222222334567899999999998 777888999999864

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.73  E-value=4.5e-19  Score=105.38  Aligned_cols=116  Identities=22%  Similarity=0.418  Sum_probs=31.2

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeec--
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRF--   72 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~--   72 (119)
                      .|+.+.|.|.+.+. |.+.+.|++++..+...     ....|.|.+++.+|.|.|.|.+.+. +.......+.+....  
T Consensus        22 ~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~l~V~~~~~~  100 (334)
T 1ry7_B           22 SGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLT-QRVLCHFSVRVTDAPSS  100 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEeccceEEEeecccccCEEEEEEEEeC-CeEEEEEEEEEeccCcc
Confidence            38899999999876 57899999998876432     3467899999999999999999987 443334444443210  


Q ss_pred             -----------------CCCeeeecC----CccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         73 -----------------DPPVIKESF----SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        73 -----------------~~~~~~~~~----~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                                       .+|.+....    ....+..|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~  166 (334)
T 1ry7_B          101 GDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRG  166 (334)
T ss_dssp             ------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCT
T ss_pred             ccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcc
Confidence                             123222111    123466899999999999999999999999887653

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.73  E-value=2.3e-17  Score=99.68  Aligned_cols=112  Identities=24%  Similarity=0.424  Sum_probs=83.6

Q ss_pred             CccEEEEEEeccCCCCeeEEee-CCccCCC-------CCCCeEEEecCCCCC------CeEEEEEEEcCCCCceeEeeEE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMK-DGKPVPD-------HNEPVFRIDSVRKED------KGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~-~~~~~~~-------~~~~~l~~~~~~~~d------~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      |+.+.|.|.+.+.|.+.|.|++ ++..+..       .....|.|.+++..|      .|.|.|.+.+..+... +..+.
T Consensus        19 G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~-s~~~~   97 (388)
T 2v5m_A           19 STGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSII-SRDVH   97 (388)
T ss_dssp             TTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEE-CCCEE
T ss_pred             CccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEEEEEEccCCeEE-ecceE
Confidence            7899999999998999999999 7776543       245689999999887      9999999999865321 22333


Q ss_pred             EeeecCCCeeeecCCccccCCCCcEEEEeEEccCCC---CeEEEEECCEEc
Q psy12725         68 LGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT---PEISWYLDGKKL  115 (119)
Q Consensus        68 v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~~~W~~~~~~~  115 (119)
                      +.+. .+|.+...+....+.+|+.+.|.|.+.+.+.   +.+.|++++..+
T Consensus        98 v~v~-~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~  147 (388)
T 2v5m_A           98 VRAV-VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEEN  147 (388)
T ss_dssp             EEEE-CCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCE
T ss_pred             EEEc-cccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcc
Confidence            3332 3444444455556789999999999877643   689999987654

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.73  E-value=9.7e-18  Score=96.05  Aligned_cols=116  Identities=14%  Similarity=0.170  Sum_probs=78.9

Q ss_pred             CCccEEEEEEeccC---CCC-eeEEeeCCccCCCC--------C------CCeEEEecCCCCCCeEEEEEEEcCCCCcee
Q psy12725          1 MLALKFFTCKYEGN---PVK-TISWMKDGKPVPDH--------N------EPVFRIDSVRKEDKGMYQCVIRNEQESAQA   62 (119)
Q Consensus         1 ~g~~~~l~c~~~~~---~~~-~v~w~~~~~~~~~~--------~------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~   62 (119)
                      .|+.++|.|.+.+.   |.+ .|.|+|++..+...        .      ...|.|..++..|.|.|.|.+.+..+....
T Consensus        31 ~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~  110 (239)
T 1i1c_A           31 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPAPI  110 (239)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSSCE
T ss_pred             cCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCCCc
Confidence            48999999999876   655 89999987544210        1      135777778888999999999998654322


Q ss_pred             EeeEEE-eeecCCCeeeecCCccccCCCCcEEEEeEEccC-CC-CeEEEEECCEEcc
Q psy12725         63 SGELKL-GGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PT-PEISWYLDGKKLV  116 (119)
Q Consensus        63 ~~~~~v-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~  116 (119)
                      ...+.+ .....+|.+...+.......|+.+.|.|.+.+. |. ..+.|++||..+.
T Consensus       111 ~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  167 (239)
T 1i1c_A          111 EKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQE  167 (239)
T ss_dssp             EEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             EEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECC
Confidence            222211 011245666554443333457889999999885 44 3799999999875

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.73  E-value=2.3e-17  Score=101.16  Aligned_cols=116  Identities=18%  Similarity=0.336  Sum_probs=81.9

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeC--CccCC-------------------C---------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKD--GKPVP-------------------D---------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~--~~~~~-------------------~---------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.+.|.|.+.+.|  .+.+.|+|+  +..+.                   .         .....|.|.+++.+|.|.
T Consensus       232 ~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~  311 (438)
T 1qgc_4          232 PGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAM  311 (438)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCE
T ss_pred             cCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEE
Confidence            489999999999887  678999986  33221                   0         012379999999999999


Q ss_pred             EEEEEEcCCC-----CceeEeeEEEeee-cCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEEcc
Q psy12725         49 YQCVIRNEQE-----SAQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLV  116 (119)
Q Consensus        49 y~C~~~~~~~-----~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~  116 (119)
                      |.|.+.|..+     .......+.+... ..+|.+...+....+..|+.+.|.|.+.+. |.+ .+.|+++|..+.
T Consensus       312 Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~  387 (438)
T 1qgc_4          312 YYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSG  387 (438)
T ss_dssp             EEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSS
T ss_pred             EEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCc
Confidence            9999998432     2223344444321 124555444444457789999999999887 777 899999987654

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.73  E-value=6.5e-17  Score=89.05  Aligned_cols=106  Identities=19%  Similarity=0.249  Sum_probs=73.5

Q ss_pred             CCccEEEEEEecc-CCCCeeEEeeC-Ccc------------CCC---------CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEG-NPVKTISWMKD-GKP------------VPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~-~~~~~v~w~~~-~~~------------~~~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      +|+.|+|.|...+ .+.+.|.|++. +..            ...         ....+|.|.+++..|+|.|.|.+.+..
T Consensus        13 ~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C~v~~~~   92 (180)
T 2dru_A           13 TGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHET   92 (180)
T ss_dssp             TTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEEEEESSS
T ss_pred             eCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEEEEEcCC
Confidence            4899999999854 24679999984 211            100         234679999999999999999998765


Q ss_pred             CCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEE-ccCCCCeEEEEECCEEcc
Q psy12725         58 ESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        58 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~  116 (119)
                       .......+.|......|.+..        .+..+.|.|.+ .+ |.|.+.|++++..+.
T Consensus        93 -~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~  142 (180)
T 2dru_A           93 -EDQWKITMEVYEMVSKPMIYW--------ECSNATLTCEVLEG-TDVELKLYQGKEHLR  142 (180)
T ss_dssp             -EEEEEEEEEEECCCCCCEEEE--------EGGGTEEEEECSSC-TTCEEEEEETTEEEE
T ss_pred             -eEEEEEEEEEECCCCCCEEEe--------cCCCEEEEEEeCCC-CCCEEEEEECCeECc
Confidence             333344455543223344332        22459999999 55 888999999998764

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.73  E-value=5.3e-17  Score=93.74  Aligned_cols=112  Identities=17%  Similarity=0.267  Sum_probs=77.9

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--ccC-------------------CC---------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KPV-------------------PD---------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~~-------------------~~---------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.|+|.|.+.+.+  .+.+.|+|++  ..+                   ..         .....|.|.+++.+|+|.
T Consensus        14 ~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~   93 (256)
T 1nqb_A           14 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   93 (256)
T ss_dssp             TTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCChhhCEE
Confidence            489999999998765  5789999842  111                   00         012479999999999999


Q ss_pred             EEEEEEcCCCC---ceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCC-----eEEEEE--CCE
Q psy12725         49 YQCVIRNEQES---AQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-----EISWYL--DGK  113 (119)
Q Consensus        49 y~C~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-----~~~W~~--~~~  113 (119)
                      |.|.+.+..+.   ......+.+.+. .++.+...+....+.+|+.+.|.|.+.+.+.+     .+.|++  ++.
T Consensus        94 Y~C~~~n~~g~~~~~~~~~~~~L~V~-~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~  167 (256)
T 1nqb_A           94 YYCARYDYYGSSYFDYWGQGTTVTVS-SDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQ  167 (256)
T ss_dssp             EEEEECCTTSSSSCSEECCCEEEEEC-CCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTS
T ss_pred             EEEEEeeccCccceeEEcCceeeeec-ccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCC
Confidence            99999987442   111112233332 34555555555568899999999999888765     899998  554

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.73  E-value=2.7e-17  Score=97.12  Aligned_cols=114  Identities=18%  Similarity=0.257  Sum_probs=82.6

Q ss_pred             CccEEEEEEec-cCCCCeeEEeeCCccCCC-------CCC-----CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          2 LALKFFTCKYE-GNPVKTISWMKDGKPVPD-------HNE-----PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         2 g~~~~l~c~~~-~~~~~~v~w~~~~~~~~~-------~~~-----~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      |+.+.+.|... +.|.+.+.|++++..+..       ..+     +.|.+......|.|.|+|.+.|..+.......+.+
T Consensus       132 ~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l  211 (313)
T 4fqp_A          132 EPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNL  211 (313)
T ss_dssp             SCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEEC
T ss_pred             CceEEEEEEccCccCCcEEEeecCCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeec
Confidence            56677888765 668899999998765532       111     24777777888999999999998666555555555


Q ss_pred             eeecCCCeeeecCC-ccccCCCCcEEEEeEEccCCCC-eEEEEECCEEcc
Q psy12725         69 GGRFDPPVIKESFS-DETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLV  116 (119)
Q Consensus        69 ~~~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~  116 (119)
                      .+. .+|.+...+. ...+.+|+.+.|.|.+.|.|.| .+.|+++|..+.
T Consensus       212 ~V~-~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~  260 (313)
T 4fqp_A          212 TVY-YPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLP  260 (313)
T ss_dssp             CBC-EEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCC
T ss_pred             ccc-cCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECC
Confidence            443 3566554333 3346678999999999999988 699999987664

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.73  E-value=3.7e-17  Score=94.76  Aligned_cols=116  Identities=16%  Similarity=0.324  Sum_probs=77.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccC------------------------C--CCCCCeEEEecCCCCCCeEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPV------------------------P--DHNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~------------------------~--~~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      .|+.|+|.|.+. .+.+.+.|||.  +...                        .  ......|.|.+++.+|+|.|.|.
T Consensus        40 ~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~  118 (268)
T 3pl6_D           40 KGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERGDSAVYLCA  118 (268)
T ss_dssp             TTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcccCEEEEEE
Confidence            489999999986 47789999982  1110                        0  01245799999999999999999


Q ss_pred             EEcCC--CCceeEeeEEEee---ecCCCeeeec-CCccccCCCCcEEEEeEEccCCCC--eEEEEECCEEccc
Q psy12725         53 IRNEQ--ESAQASGELKLGG---RFDPPVIKES-FSDETLNPGPNYYFKCIASGNPTP--EISWYLDGKKLVN  117 (119)
Q Consensus        53 ~~~~~--~~~~~~~~~~v~~---~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~  117 (119)
                      +.+..  ........+.+..   ...+|.+... +....+..|+.+.|.|.+.+.+++  .+.|+++|..+..
T Consensus       119 ~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~~  191 (268)
T 3pl6_D          119 TSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS  191 (268)
T ss_dssp             EESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEECT
T ss_pred             EecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEECCC
Confidence            99742  1222233444432   1124544433 333345568999999999886554  8999999988753

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.73  E-value=5.4e-17  Score=99.88  Aligned_cols=115  Identities=16%  Similarity=0.265  Sum_probs=80.3

Q ss_pred             CCccEEEEEEeccCC----CCeeEEeeCCccCCCCC--------------CCeEEEecCCCCCCeEEEEEEEcCCCCcee
Q psy12725          1 MLALKFFTCKYEGNP----VKTISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQA   62 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~----~~~v~w~~~~~~~~~~~--------------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~   62 (119)
                      .|+.+.|.|.+.+.+    .+.+.|++++..+....              ...|.|..++..|.|.|.|.+.|..+....
T Consensus       254 ~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~  333 (444)
T 1igt_B          254 ISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPI  333 (444)
T ss_dssp             TTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCE
T ss_pred             cCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCce
Confidence            489999999998873    36899999987664211              136888888889999999999998765533


Q ss_pred             EeeEEEe-eecCCCeeeecCCcc-ccCCCCcEEEEeEEccC-CCC-eEEEEECCEEcc
Q psy12725         63 SGELKLG-GRFDPPVIKESFSDE-TLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLV  116 (119)
Q Consensus        63 ~~~~~v~-~~~~~~~~~~~~~~~-~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~  116 (119)
                      ...+.+. ....+|.+...+... .+..| .+.|.|.+.+. |.+ .+.|+++|..+.
T Consensus       334 ~~~v~~~~~~~~~P~v~~~~~~~~~~~~~-~~~L~C~~~g~~P~~~~v~W~k~g~~l~  390 (444)
T 1igt_B          334 ERTISKPKGSVRAPQVYVLPPPEEEMTKK-QVTLTCMVTDFMPEDIYVEWTNNGKTEL  390 (444)
T ss_dssp             EEEEECCCCCCBCCEEEEECCCGGGTTSS-EEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             EEEEeccCCCCCCCEEEEeCCChHHccCC-eEEEEEEEEeeeCCCCEEEEEECCEEcc
Confidence            3333220 112466665544332 33444 59999999884 555 899999998774

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.72  E-value=5.4e-17  Score=99.48  Aligned_cols=117  Identities=18%  Similarity=0.294  Sum_probs=81.6

Q ss_pred             CCccEEEEEEeccCCC----CeeEEeeCC--ccCC------------CC---------CCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPV----KTISWMKDG--KPVP------------DH---------NEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~----~~v~w~~~~--~~~~------------~~---------~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.+.|.|.+.+.+.    +.+.|+|++  ..+.            ..         ....|.|.+++.+|+|.|.|.+
T Consensus        15 ~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   94 (438)
T 1qgc_4           15 LGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEADDVATYYCQQ   94 (438)
T ss_dssp             TTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCcCcCCeeEEEEE
Confidence            4899999999987765    489999963  2210            00         1236999999999999999999


Q ss_pred             EcCCCCc-eeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEcc-CCCC-eEEEEECCEEccc
Q psy12725         54 RNEQESA-QASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTP-EISWYLDGKKLVN  117 (119)
Q Consensus        54 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~  117 (119)
                      .+..+.. .....+.+.....+|.+...+......+|+.+.|.|.+.+ .|.+ .+.|+++|..+..
T Consensus        95 ~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~  161 (438)
T 1qgc_4           95 SNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQN  161 (438)
T ss_dssp             CSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             ecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCC
Confidence            9875432 2334455533223566665443333345779999999877 5666 8999999988754

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.72  E-value=3.2e-17  Score=98.55  Aligned_cols=100  Identities=11%  Similarity=0.076  Sum_probs=78.6

Q ss_pred             CCccEEEEEEecc-----CCCCeeEEeeCCccCCCC-------------------------C--CCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEG-----NPVKTISWMKDGKPVPDH-------------------------N--EPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~-----~~~~~v~w~~~~~~~~~~-------------------------~--~~~l~~~~~~~~d~g~   48 (119)
                      .|+.+.|.|.+.+     .|.+.+.|++++..+...                         .  ...|.|.+++..|.|.
T Consensus       190 ~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~  269 (363)
T 1wio_A          190 EGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGS  269 (363)
T ss_dssp             TBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEE
T ss_pred             cCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcE
Confidence            3889999998877     677899999998765431                         1  3489999999999999


Q ss_pred             EEEEEEcC--CCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCe--EEEEECCEEcc
Q psy12725         49 YQCVIRNE--QESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPE--ISWYLDGKKLV  116 (119)
Q Consensus        49 y~C~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~--~~W~~~~~~~~  116 (119)
                      |.|.+.|.  .+.......+.+..      +          .|+.+.|.|.+.+.|.|.  +.|++++..+.
T Consensus       270 Y~C~a~n~~~~g~~~~~~~l~V~~------v----------~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~  325 (363)
T 1wio_A          270 GNLTLALEAKTGKLHQEVNLVVMR------A----------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAK  325 (363)
T ss_dssp             EEEEECBTTTTCCEEEEEEEEEEE------E----------CCCSSSEEEEEESSCCTTCCEEEECSSSSCS
T ss_pred             EEEEEEEhhhcCeEEEEEeEEEEE------e----------cCCCeeEEEEEccccCCCccEEEEeCCCcee
Confidence            99999998  76555455555431      1          178899999999998887  99999987664

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.72  E-value=1.9e-16  Score=100.17  Aligned_cols=110  Identities=17%  Similarity=0.244  Sum_probs=81.7

Q ss_pred             CCccEEEEEEeccCCCC---eeEEeeCCccCC-------------------------CCCCCeEEEecCCCCCCeEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVK---TISWMKDGKPVP-------------------------DHNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~---~v~w~~~~~~~~-------------------------~~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      .|+.+.|.|.+.+.+.+   .+.|+|++..+.                         ......|.|.+++..|.|.|.|.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~   93 (585)
T 2ocw_A           14 EGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCG   93 (585)
T ss_pred             cCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcccCEEEEEE
Confidence            48999999999887543   799999875321                         00123688999999999999999


Q ss_pred             EEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCC-CCeEEEEECCE
Q psy12725         53 IRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNP-TPEISWYLDGK  113 (119)
Q Consensus        53 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~~~  113 (119)
                      +.+..+.......+.+.   .+|.+...+....+.+|+.+.|.|.+.+.+ .+.+.|++++.
T Consensus        94 ~~n~~~~~~~~~~l~V~---~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~  152 (585)
T 2ocw_A           94 LGINSRGLSFDVSLEVS---QGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIG  152 (585)
T ss_pred             cccCCCCceEEEEEEEe---cCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCC
Confidence            98876554444444443   456666666666788999999999998654 56799999874

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.72  E-value=4.2e-17  Score=92.90  Aligned_cols=115  Identities=13%  Similarity=0.214  Sum_probs=76.9

Q ss_pred             CCccEEEEEEeccC-CC-C-eeEEeeCCccC-CCC--------CC-----CeEEEecCCCCCCeEEEEEEEcCCCCceeE
Q psy12725          1 MLALKFFTCKYEGN-PV-K-TISWMKDGKPV-PDH--------NE-----PVFRIDSVRKEDKGMYQCVIRNEQESAQAS   63 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~-~-~v~w~~~~~~~-~~~--------~~-----~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~   63 (119)
                      .|+.++|.|.+.+. |. + .+.|++++..+ ...        .+     ..|.|..+...|.|.|+|.+.+.....  .
T Consensus        27 ~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~--~  104 (231)
T 2w59_A           27 ISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEELPL--P  104 (231)
T ss_dssp             TSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTCSS--C
T ss_pred             cCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCCCC--c
Confidence            48899999999884 63 4 99999998776 221        11     247777778889999999999876432  2


Q ss_pred             eeEEEee---ecCCCeeeecCCccccCCCCcEEEEeEEccC-C-CCeEEEEECCEEccc
Q psy12725         64 GELKLGG---RFDPPVIKESFSDETLNPGPNYYFKCIASGN-P-TPEISWYLDGKKLVN  117 (119)
Q Consensus        64 ~~~~v~~---~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~~~W~~~~~~~~~  117 (119)
                      ..+.+..   ...+|.+...........+..+.|.|.+.+. | .+.+.|++||..+..
T Consensus       105 ~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~  163 (231)
T 2w59_A          105 LSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPA  163 (231)
T ss_dssp             EEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCG
T ss_pred             eEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEECCC
Confidence            2333321   1135555443322111234579999999886 4 358999999998754

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.72  E-value=8.7e-17  Score=91.20  Aligned_cols=114  Identities=13%  Similarity=0.289  Sum_probs=77.7

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--ccC-------------------CC---------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KPV-------------------PD---------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~~-------------------~~---------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.|+|.|.+.+.+  .+.+.|||..  ..+                   ..         .....|.|.+++.+|+|.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~   93 (225)
T 1op3_H           14 AGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVEDTAI   93 (225)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCChhhCEE
Confidence            489999999998765  6789999843  211                   00         012479999999999999


Q ss_pred             EEEEEEcCCC-----C---ceeEeeEEEeee-cCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEE
Q psy12725         49 YQCVIRNEQE-----S---AQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKK  114 (119)
Q Consensus        49 y~C~~~~~~~-----~---~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~  114 (119)
                      |.|.+.+..+     .   ......+.|... ..+|.+........+..|+.+.|.|.+.+. |.+ .+.|++++..
T Consensus        94 Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~  170 (225)
T 1op3_H           94 YYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALT  170 (225)
T ss_dssp             EEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCTTSCC
T ss_pred             EEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEecCCCc
Confidence            9999998743     1   112334444321 123554433323345689999999999876 666 8999998865

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.72  E-value=1.2e-16  Score=91.49  Aligned_cols=116  Identities=22%  Similarity=0.344  Sum_probs=76.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEee--------------CCccC-----C---------CCCCCeEEEecCCCCCCeEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMK--------------DGKPV-----P---------DHNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~--------------~~~~~-----~---------~~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      +|+.|.|.| ..+.+.+.+.|||              ++...     .         ......|.|.+++.+|+|.|.|.
T Consensus        16 ~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   94 (245)
T 4ei6_B           16 MGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSAVYFCA   94 (245)
T ss_dssp             TTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGGGCEEEEEE
T ss_pred             CCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHhHCEEEEEE
Confidence            489999999 5566788999998              11100     0         01234799999999999999999


Q ss_pred             EEcCC----CCceeEeeEEEeee---cCCCeeeec-CCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725         53 IRNEQ----ESAQASGELKLGGR---FDPPVIKES-FSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLVN  117 (119)
Q Consensus        53 ~~~~~----~~~~~~~~~~v~~~---~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~  117 (119)
                      +.+..    ........+.+...   ..+|.+... +....+..|+.+.|.|.+.+. |.+ .+.|+++|..+..
T Consensus        95 ~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l~~  169 (245)
T 4ei6_B           95 SSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS  169 (245)
T ss_dssp             EECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             EccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEECCC
Confidence            98532    11222334444321   124544432 233345568999999999885 444 7999999998764

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.72  E-value=2e-16  Score=89.58  Aligned_cols=116  Identities=19%  Similarity=0.324  Sum_probs=78.0

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--cc---C----------------CC---------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KP---V----------------PD---------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~---~----------------~~---------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.|+|.|.+.+.+  .+.+.|||..  ..   +                ..         .....|.|.+++.+|+|.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~   93 (223)
T 1dee_B           14 PGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAV   93 (223)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCHHHCEE
Confidence            489999999998754  4689999843  11   0                00         012479999999999999


Q ss_pred             EEEEEEcCCC---C---ceeEeeEEEee-ecCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEE-CCEEcc
Q psy12725         49 YQCVIRNEQE---S---AQASGELKLGG-RFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYL-DGKKLV  116 (119)
Q Consensus        49 y~C~~~~~~~---~---~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~-~~~~~~  116 (119)
                      |.|.+.+..+   .   ......+.|.. ...+|.+........+..|+.+.|.|.+.+. |.+ .+.|++ +|..+.
T Consensus        94 Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~  171 (223)
T 1dee_B           94 YYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDIS  171 (223)
T ss_dssp             EEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCS
T ss_pred             EEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCCccc
Confidence            9999998642   1   11223444432 1124555433223345789999999999887 766 899999 887653

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.72  E-value=6e-17  Score=91.43  Aligned_cols=113  Identities=16%  Similarity=0.358  Sum_probs=78.5

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--cc---C------------------CC---------CCCCeEEEecCCCCCC
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KP---V------------------PD---------HNEPVFRIDSVRKEDK   46 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~---~------------------~~---------~~~~~l~~~~~~~~d~   46 (119)
                      .|+.|+|.|.+.+.+  .+.+.|+|++  ..   +                  ..         .....|.|.+++.+|+
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~   93 (220)
T 1pz5_B           14 PGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNLRAEDT   93 (220)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             CCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccCCHHHC
Confidence            489999999998765  6789999853  11   0                  00         0112799999999999


Q ss_pred             eEEEEEEEcCCCCc-e--eEeeEEEeee-cCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCE
Q psy12725         47 GMYQCVIRNEQESA-Q--ASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGK  113 (119)
Q Consensus        47 g~y~C~~~~~~~~~-~--~~~~~~v~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~  113 (119)
                      |.|.|.+.+..+.. .  ....+.+... ..+|.+...+....+.+|+.+.|.|.+.+. |.| .+.|++++.
T Consensus        94 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~  166 (220)
T 1pz5_B           94 GIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGAL  166 (220)
T ss_dssp             EEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred             EEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCCc
Confidence            99999999864321 1  2334444321 134555544433456789999999999887 888 999998875

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.72  E-value=5.2e-17  Score=93.92  Aligned_cols=105  Identities=19%  Similarity=0.370  Sum_probs=76.2

Q ss_pred             CCccEEEEEEec---cCCCCeeEEeeCCccCCC-----------------------------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYE---GNPVKTISWMKDGKPVPD-----------------------------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~---~~~~~~v~w~~~~~~~~~-----------------------------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.+.|.|.+.   +.+.+.+.|++++.....                             .....|.|.+++.+|+|.
T Consensus        19 ~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~   98 (268)
T 3mj6_A           19 VGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGI   98 (268)
T ss_dssp             TTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSCCGGGCEE
T ss_pred             cCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCCCHhHCEE
Confidence            489999999987   556778999985432110                             122679999999999999


Q ss_pred             EEEEEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEE---ccCCCCeEEEEEC
Q psy12725         49 YQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA---SGNPTPEISWYLD  111 (119)
Q Consensus        49 y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~~~W~~~  111 (119)
                      |.|.+.+..........+.+.+....      +....+..|+.+.|.|.+   .+.|.+.+.|+++
T Consensus        99 Y~C~~~~~~~~~~~~~~~~l~V~~~~------p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~  158 (268)
T 3mj6_A           99 YTCEIRLKNESMVMKKPVELWVLPEE------PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFS  158 (268)
T ss_dssp             EEEEEEETTCCCEEEEEEEEEEECCC------CSEEEEETTCCEEECCBCEESSSSCCCEEEEEEE
T ss_pred             EEEEEEecCCcceEEEEEEEEEeccC------CCccccccCCcEEEEEEecCCCCCCccceEEEec
Confidence            99999987554444444555442122      223457789999999998   5668889999983

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.71  E-value=2.8e-16  Score=90.17  Aligned_cols=111  Identities=17%  Similarity=0.299  Sum_probs=74.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCcc--C-----------C-CC---------CCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKP--V-----------P-DH---------NEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~--~-----------~-~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.|+|.|.+.+.+.+.+.|+|....  .           . ..         ....|.|.+++.+|.|.|.|.+.+..
T Consensus        18 ~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~   97 (250)
T 3esu_F           18 LGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYFCQQGNTL   97 (250)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             CCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEEEEEEeeCC
Confidence            489999999999988889999985310  0           0 00         11269999999999999999998764


Q ss_pred             CCc-eeEeeEEEeee----------------cCCCeeeecCCccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         58 ESA-QASGELKLGGR----------------FDPPVIKESFSDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        58 ~~~-~~~~~~~v~~~----------------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      +.. .....+.+...                ..++.....+....+.+|+.+.|.|.+.+.+  .+.+.|+++
T Consensus        98 ~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~  170 (250)
T 3esu_F           98 PWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQ  170 (250)
T ss_dssp             SCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEE
T ss_pred             CceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEEE
Confidence            321 12233444321                0112222334445678999999999998876  678999986

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.71  E-value=1.6e-16  Score=91.64  Aligned_cols=111  Identities=18%  Similarity=0.279  Sum_probs=77.2

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--ccCC-------------------C---------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KPVP-------------------D---------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~~~-------------------~---------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.|+|.|.+.+.+  .+.+.|||..  ..+.                   .         .....|.|.+++.+|+|.
T Consensus        16 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~   95 (256)
T 3umt_A           16 PGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTSEDSAV   95 (256)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEE
T ss_pred             CCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCcccCEE
Confidence            489999999998765  6789999732  1100                   0         012349999999999999


Q ss_pred             EEEEEEcCC----CCceeEeeEEEeee------------c-CCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         49 YQCVIRNEQ----ESAQASGELKLGGR------------F-DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        49 y~C~~~~~~----~~~~~~~~~~v~~~------------~-~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      |.|.+.+..    ........+.|...            . .++.+...+....+.+|+.++|.|.+.+.+.+.+.|+++
T Consensus        96 Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~  175 (256)
T 3umt_A           96 YYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGSNLNWLQQ  175 (256)
T ss_dssp             EEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             EEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCcEEEEEEE
Confidence            999998762    11222334444321            0 145555555556788999999999999988889999983

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.71  E-value=1.4e-16  Score=92.78  Aligned_cols=111  Identities=16%  Similarity=0.242  Sum_probs=74.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCcc-----CC---------CC---------CCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKP-----VP---------DH---------NEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~-----~~---------~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.|+|.|.+.+.+.+.+.|||++..     +.         ..         ....|.|.+++.+|+|.|.|.+.+..
T Consensus        26 ~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~  105 (276)
T 3auv_A           26 VGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQHYTT  105 (276)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             CCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEEEEEEecCC
Confidence            489999999999888889999985421     10         00         12379999999999999999999864


Q ss_pred             CC-ceeEeeEEEeeec----------CCCe-eeecCCccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         58 ES-AQASGELKLGGRF----------DPPV-IKESFSDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        58 ~~-~~~~~~~~v~~~~----------~~~~-~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      +. ......+.|....          .+|. ....+....+.+|+.+.|.|.+.+.+  .+.+.|+++
T Consensus       106 ~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~  173 (276)
T 3auv_A          106 PPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQ  173 (276)
T ss_dssp             SCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             cccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEc
Confidence            32 2222334433210          0122 22233455678999999999998876  478999985

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.71  E-value=1.1e-16  Score=92.14  Aligned_cols=116  Identities=16%  Similarity=0.309  Sum_probs=76.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--cc----------------------CC---CCCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KP----------------------VP---DHNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~----------------------~~---~~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|.+.+.+.+.+.|||..  ..                      +.   ..... |.|.+++.+|+|.|+|.+
T Consensus        15 ~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~~DsG~Y~C~~   93 (253)
T 3to4_D           15 RGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANMSQGRTLYCTS   93 (253)
T ss_dssp             SSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESCSSCEEEEEEE
T ss_pred             CCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCChhhCeEEEEEE
Confidence            4899999999888788899999821  10                      00   00111 899999999999999999


Q ss_pred             EcCCC----C--ceeEeeEEEeee---cCCCeeeecC-CccccCCCCcEEEEeEEcc-CCCC-eEEEEECCEEccc
Q psy12725         54 RNEQE----S--AQASGELKLGGR---FDPPVIKESF-SDETLNPGPNYYFKCIASG-NPTP-EISWYLDGKKLVN  117 (119)
Q Consensus        54 ~~~~~----~--~~~~~~~~v~~~---~~~~~~~~~~-~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~  117 (119)
                      .+..+    .  ......+.+...   ..+|.+.... ....+..|+.+.|.|.+.+ .|.+ .+.|+++|..+..
T Consensus        94 ~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l~~  169 (253)
T 3to4_D           94 SADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS  169 (253)
T ss_dssp             ECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             ecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEECCC
Confidence            86532    1  111223444321   1345544432 2223345689999999988 4666 7999999998754

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.71  E-value=7.9e-17  Score=91.52  Aligned_cols=115  Identities=16%  Similarity=0.287  Sum_probs=73.4

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--ccC-------------------CC---------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KPV-------------------PD---------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~~-------------------~~---------~~~~~l~~~~~~~~d~g~   48 (119)
                      +|+.|+|.|.+.+.+  .+.+.|||..  ..+                   ..         .....|.|.+++.+|+|.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D~G~   93 (227)
T 1mju_H           14 PGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDDSAV   93 (227)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCCcccCEE
Confidence            489999999998765  6789999853  211                   00         012479999999999999


Q ss_pred             EEEEEEcCCCC-ceeEeeEEEee-ecCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEEc
Q psy12725         49 YQCVIRNEQES-AQASGELKLGG-RFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKL  115 (119)
Q Consensus        49 y~C~~~~~~~~-~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~  115 (119)
                      |.|.+.+.... ......+.|.. ...+|.+........+..|+.+.|.|.+.+. |.+ .+.|++++..+
T Consensus        94 Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~  164 (227)
T 1mju_H           94 YYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSS  164 (227)
T ss_dssp             EEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             EEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcC
Confidence            99999875311 11223444432 1124554443323345689999999999875 666 89999988754

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.71  E-value=1.7e-16  Score=92.74  Aligned_cols=113  Identities=17%  Similarity=0.318  Sum_probs=77.3

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCCc--cC-------------------CC---------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDGK--PV-------------------PD---------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~~--~~-------------------~~---------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.|+|.|.+.+.+  .+.+.|||++.  .+                   ..         .....|.|.+++.+|+|.
T Consensus        40 ~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~  119 (282)
T 1qok_A           40 SGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTSEDTAV  119 (282)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCChhhCEE
Confidence            489999999998764  57899998531  10                   00         012479999999999999


Q ss_pred             EEEEEEcCCC---Cce--eEeeEEEeeec------------CCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEE-
Q psy12725         49 YQCVIRNEQE---SAQ--ASGELKLGGRF------------DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL-  110 (119)
Q Consensus        49 y~C~~~~~~~---~~~--~~~~~~v~~~~------------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~-  110 (119)
                      |.|.+.+..+   ...  ....+.|....            .++.+...+....+.+|+.+.|.|.+.+.+ +.+.|+| 
T Consensus       120 Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~  198 (282)
T 1qok_A          120 YYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-SYMHWFQQ  198 (282)
T ss_dssp             EEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC-SCCEEEEE
T ss_pred             EEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-ceEEEEEE
Confidence            9999998754   111  22344443211            123344444455688999999999999888 8999998 


Q ss_pred             -CCEE
Q psy12725        111 -DGKK  114 (119)
Q Consensus       111 -~~~~  114 (119)
                       ++..
T Consensus       199 ~~g~~  203 (282)
T 1qok_A          199 KPGTS  203 (282)
T ss_dssp             CTTSC
T ss_pred             CCCCC
Confidence             5543

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.71  E-value=1.2e-16  Score=94.79  Aligned_cols=115  Identities=16%  Similarity=0.261  Sum_probs=77.6

Q ss_pred             CCccEEEEEEeccC-CCC---eeEEeeCC-ccCCCC--------C-----CCeEEEecCCCCCCeEEEEEEEcCCCCcee
Q psy12725          1 MLALKFFTCKYEGN-PVK---TISWMKDG-KPVPDH--------N-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQA   62 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~---~v~w~~~~-~~~~~~--------~-----~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~   62 (119)
                      .|+.+.|.|.+.+. |.+   .|.|++++ ..+...        .     ...|.|..++..|.|.|+|.+.+...... 
T Consensus       127 ~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~-  205 (323)
T 2wqr_A          127 IRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRA-  205 (323)
T ss_dssp             TSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC-
T ss_pred             cCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCC-
Confidence            48899999999875 455   89999964 443221        1     12588888889999999999998753222 


Q ss_pred             EeeEEEee---ecCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725         63 SGELKLGG---RFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLVN  117 (119)
Q Consensus        63 ~~~~~v~~---~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~  117 (119)
                       ..+.+..   ...+|.+...+.......|+.+.|.|.+.+. |.+ .+.|+++|..+..
T Consensus       206 -~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~  264 (323)
T 2wqr_A          206 -LMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPD  264 (323)
T ss_dssp             -EEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCG
T ss_pred             -eeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCC
Confidence             2233321   1235665543333223349999999999884 443 7999999998753

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.71  E-value=6.2e-17  Score=94.60  Aligned_cols=105  Identities=16%  Similarity=0.159  Sum_probs=78.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccC--CCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCeee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPV--PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIK   78 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~--~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~   78 (119)
                      .|+.+.|.|.+.+    .+.|++++..+  ....+..|.|.+++..|.|.|.|.+.+  +. .....+.+.   .+|.+.
T Consensus        26 ~G~~v~l~C~~~~----~i~W~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n--g~-~~~~~l~V~---~~~~~~   95 (290)
T 2o26_X           26 AGDTLSLTCIDPD----FVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSN--GL-TSSIYVFVR---DPAKLF   95 (290)
T ss_dssp             TTSCEEEEEECTT----EEEEEEECSSSCEEEECSSEEEETTCCGGGCEEEEEEESS--SC-EEEEEEEEE---CSSCCB
T ss_pred             CCCcEEEEECCCC----cEEEecCCcceeeecCCCceEEEeccCHHhCeEEEEEeeC--Cc-cEEEEEEEe---CCCccc
Confidence            4899999999987    89999998876  222448999999999999999999998  22 334444443   234333


Q ss_pred             ecCCccccCCCCcEEEEeEEccCCC-CeEEEE-ECCEEcc
Q psy12725         79 ESFSDETLNPGPNYYFKCIASGNPT-PEISWY-LDGKKLV  116 (119)
Q Consensus        79 ~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~-~~~~~~~  116 (119)
                      ..+....+.+|+.+.|.|.+.+ |. +.+.|+ ++|..+.
T Consensus        96 ~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~  134 (290)
T 2o26_X           96 LVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLP  134 (290)
T ss_dssp             CCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCC
T ss_pred             ccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCC
Confidence            4444556778999999999885 77 889995 6777664

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.71  E-value=2e-16  Score=89.18  Aligned_cols=114  Identities=16%  Similarity=0.340  Sum_probs=77.7

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--ccCC----------------C-----------CCCCeEEEecCCCCCCeEE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KPVP----------------D-----------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~~~----------------~-----------~~~~~l~~~~~~~~d~g~y   49 (119)
                      .|+.|+|.|.+.+.+  .+.+.|||..  ....                .           .....|.|.+++.+|+|.|
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   93 (215)
T 1c5d_H           14 PSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIY   93 (215)
T ss_dssp             TTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGGGCEEE
T ss_pred             CCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCcccCEEE
Confidence            489999999998754  4789999852  1110                0           0123799999999999999


Q ss_pred             EEEEEcCCC---CceeEeeEEEeee-cCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEE
Q psy12725         50 QCVIRNEQE---SAQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKK  114 (119)
Q Consensus        50 ~C~~~~~~~---~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~  114 (119)
                      .|.+.+..+   .......+.|... ..+|.+...+....+..|+.+.|.|.+.+. |.+ .+.|++++..
T Consensus        94 ~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~  164 (215)
T 1c5d_H           94 FCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALS  164 (215)
T ss_dssp             EEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTC
T ss_pred             EEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCcc
Confidence            999987642   1222344555421 124555443333346789999999999886 777 8999998764

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.71  E-value=2.8e-16  Score=99.38  Aligned_cols=112  Identities=19%  Similarity=0.288  Sum_probs=82.2

Q ss_pred             CCccEEEEEEeccCCCCee----EEee--CCc--cCCC---------C---------CCC--eEEEecCCCCCCeEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTI----SWMK--DGK--PVPD---------H---------NEP--VFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v----~w~~--~~~--~~~~---------~---------~~~--~l~~~~~~~~d~g~y~C~   52 (119)
                      .|+.+.|.|.+.+.|.+.+    .|++  ++.  .+..         .         ...  .|.|.+++.+|.|.|.|.
T Consensus       345 ~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~  424 (585)
T 2ocw_A          345 AGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCL  424 (585)
T ss_pred             eCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEc
Confidence            3889999999998888876    7999  776  3311         0         112  388999999999999999


Q ss_pred             EEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEc----cCCCCeEEEEECCEEcc
Q psy12725         53 IRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIAS----GNPTPEISWYLDGKKLV  116 (119)
Q Consensus        53 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~----~~p~~~~~W~~~~~~~~  116 (119)
                      + +..+.......+.+.  ..+|.+.. +....+..|+.+.|.|.+.    +.|.+.+.|+++|..+.
T Consensus       425 a-n~~g~~~~~~~l~V~--~~~p~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~  488 (585)
T 2ocw_A          425 T-NGDTLWRTTVEIKII--EGEPNLKV-PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQAL  488 (585)
T ss_pred             c-cCCCccceeEEEEEe--cCcccccc-CCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceee
Confidence            8 766555445555553  23454443 4555688999999999986    56777899999997663

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.70  E-value=1.3e-16  Score=90.16  Aligned_cols=114  Identities=18%  Similarity=0.280  Sum_probs=78.1

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--cc---C----------------CC---------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KP---V----------------PD---------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~---~----------------~~---------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.|+|.|.+.+.+  .+.+.|||..  ..   +                ..         .....|.|.+++.+|+|.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~   93 (220)
T 2fbj_H           14 PGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTAL   93 (220)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGGCEE
T ss_pred             CCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCChhhCEE
Confidence            489999999998755  5789999842  11   0                00         012379999999999999


Q ss_pred             EEEEEEcCCCC---ceeEeeEEEeee-cCCCeeeecCCccccCCCCcEEEEeEEccC-CC--CeEEEEECCEEc
Q psy12725         49 YQCVIRNEQES---AQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGN-PT--PEISWYLDGKKL  115 (119)
Q Consensus        49 y~C~~~~~~~~---~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~~~W~~~~~~~  115 (119)
                      |.|.+.+....   ......+.|... ..+|.+...+ ...+..|+.+.|.|.+.+. |.  +.+.|++++..+
T Consensus        94 Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~  166 (220)
T 2fbj_H           94 YYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDI  166 (220)
T ss_dssp             EEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSC
T ss_pred             EEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEec
Confidence            99999886432   112334444321 1245555444 3346789999999999876 65  689999988654

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.70  E-value=8.4e-19  Score=113.57  Aligned_cols=115  Identities=22%  Similarity=0.448  Sum_probs=0.0

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC-----------------------------CCCeEEEecCCCCCCeEEEEE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH-----------------------------NEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----------------------------~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      |+.+.|.|.+.+.|.+.+.|++++..+...                             ....|.|.+++.+|.|.|.|.
T Consensus       564 G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  643 (772)
T 3v2a_R          564 QESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCL  643 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEE
Confidence            789999999999888999999987543210                             112488999999999999999


Q ss_pred             EEcCCCCcee--EeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         53 IRNEQESAQA--SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        53 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      +.|..+....  ...+.+.+ ..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus       644 a~n~~~~~~~s~~~~l~v~~-~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~  709 (772)
T 3v2a_R          644 AQDRKTKKRHCVVRQLTVLE-RVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE  709 (772)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             EEeCCCCeEEEEEEeecccc-cCCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcC
Confidence            9995433222  23344432 2466776666666788999999999999999999999999987754

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.70  E-value=2.5e-16  Score=90.81  Aligned_cols=110  Identities=20%  Similarity=0.347  Sum_probs=75.3

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeCC--cc---C-------------CC-----------CCCCeEEEecCCCCCCeEE
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKDG--KP---V-------------PD-----------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~~--~~---~-------------~~-----------~~~~~l~~~~~~~~d~g~y   49 (119)
                      .|+.|+|.|.+.+.  +.+.+.|||..  ..   +             ..           .....|.|.+++.+|+|.|
T Consensus        22 ~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y  101 (257)
T 3gkz_A           22 PSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSEDTATY  101 (257)
T ss_dssp             TTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChhhCEEE
Confidence            48999999999874  46789999832  11   0             00           0122699999999999999


Q ss_pred             EEEEEcCCCC----ceeEeeEEEeee-----------cCCCeeeecCCccccCCCCcEEEEeEEccCCCC-eEEEEE
Q psy12725         50 QCVIRNEQES----AQASGELKLGGR-----------FDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYL  110 (119)
Q Consensus        50 ~C~~~~~~~~----~~~~~~~~v~~~-----------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~  110 (119)
                      .|.+.+..+.    ......+.|...           ..++.+...+....+.+|+.++|.|.+.+.+.+ .+.|++
T Consensus       102 ~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k  178 (257)
T 3gkz_A          102 YCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYWYQ  178 (257)
T ss_dssp             EEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGGGEEEEE
T ss_pred             EEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccceEEEEEE
Confidence            9999986211    112233444321           013444544555678899999999999888777 899998

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.70  E-value=7.9e-17  Score=95.59  Aligned_cols=111  Identities=18%  Similarity=0.286  Sum_probs=80.1

Q ss_pred             ccEEEEEE-eccCCCCeeEEeeCCccCC------CCC-----CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEee
Q psy12725          3 ALKFFTCK-YEGNPVKTISWMKDGKPVP------DHN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG   70 (119)
Q Consensus         3 ~~~~l~c~-~~~~~~~~v~w~~~~~~~~------~~~-----~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~   70 (119)
                      +.+.|.|. ..+.|.+.+.|++++....      ...     ...|.+..+...|.|.|+|.+.+..+.......+.+. 
T Consensus       151 ~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~-  229 (331)
T 3u83_A          151 KVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQ-  229 (331)
T ss_dssp             CEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEE-
T ss_pred             ceEEEEEEecCCcCCceEEEEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEe-
Confidence            67999998 7788999999999532110      111     1347777778999999999999986554444444443 


Q ss_pred             ecCCCeeeecC-CccccCCCCcEEEEeEEccCCCCe-EEEEECCEEcc
Q psy12725         71 RFDPPVIKESF-SDETLNPGPNYYFKCIASGNPTPE-ISWYLDGKKLV  116 (119)
Q Consensus        71 ~~~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~p~~~-~~W~~~~~~~~  116 (119)
                        .+|.+...+ ....+..|+.+.|.|.+.+.|.|. +.|++++..+.
T Consensus       230 --~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~  275 (331)
T 3u83_A          230 --YEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLP  275 (331)
T ss_dssp             --EEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCC
T ss_pred             --cCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCccc
Confidence              244554333 344578899999999999999997 99999987654

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.70  E-value=3.5e-17  Score=98.82  Aligned_cols=112  Identities=22%  Similarity=0.340  Sum_probs=80.8

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC-------CCCeEEEecCCC-CCCeEEEEEEEcCCCCcee-EeeEEEeeec
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRK-EDKGMYQCVIRNEQESAQA-SGELKLGGRF   72 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~-~d~g~y~C~~~~~~~~~~~-~~~~~v~~~~   72 (119)
                      |+.+.|.|.+.+.|.+.+.|++++..+...       ....|.|.++.. .|+|.|.|.+.+..+.... ...+.+..  
T Consensus        22 g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~--   99 (382)
T 1cs6_A           22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGF--   99 (382)
T ss_dssp             CCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEE--
T ss_pred             CCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEeeCCeEEEecccccccCEEEEEEEEcCCcEEEecceEEEeec--
Confidence            789999999998888999999999877542       235788888886 9999999999987643221 23333332  


Q ss_pred             CCCeeeecCCccccCCCCcEEEEeEE-ccCCCCeEEEEECCEEc
Q psy12725         73 DPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKL  115 (119)
Q Consensus        73 ~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~  115 (119)
                      .++..........+.+|+.+.|.|.+ .+.|.+.+.|++++..+
T Consensus       100 ~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~  143 (382)
T 1cs6_A          100 LQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPN  143 (382)
T ss_dssp             ECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTC
T ss_pred             cccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCcc
Confidence            12211222334457799999999985 45677899999987643

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.70  E-value=7.6e-17  Score=91.60  Aligned_cols=114  Identities=18%  Similarity=0.345  Sum_probs=75.3

Q ss_pred             CCccEEEEEEeccCCC----CeeEEeeCC--ccCC----------------C-----------CCCCeEEEecCCCCCCe
Q psy12725          1 MLALKFFTCKYEGNPV----KTISWMKDG--KPVP----------------D-----------HNEPVFRIDSVRKEDKG   47 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~----~~v~w~~~~--~~~~----------------~-----------~~~~~l~~~~~~~~d~g   47 (119)
                      .|+.|+|.|.+.+.+.    +.+.|||..  ..+.                .           .....|.|.+++.+|+|
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G   93 (228)
T 3bae_H           14 PSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVDTADTA   93 (228)
T ss_dssp             TTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             CCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCCcccCE
Confidence            4899999999987664    789999842  2110                0           01257999999999999


Q ss_pred             EEEEEEEcCCC------C---ceeEeeEEEee-ecCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEE
Q psy12725         48 MYQCVIRNEQE------S---AQASGELKLGG-RFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKK  114 (119)
Q Consensus        48 ~y~C~~~~~~~------~---~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~  114 (119)
                      .|.|.+.+..+      .   ......+.|.. ...+|.+........+..|+.+.|.|.+.+. |.+ .+.|++++..
T Consensus        94 ~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W~~~~~~  172 (228)
T 3bae_H           94 TYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLS  172 (228)
T ss_dssp             EEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEEGGGTCC
T ss_pred             EEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEEeeCCcc
Confidence            99999988643      1   11223444432 1124555443333345789999999999876 777 8999998764

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.70  E-value=1.4e-16  Score=92.96  Aligned_cols=117  Identities=19%  Similarity=0.353  Sum_probs=78.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccC-------------CC--------------CCCCeEEEecCCCCCCeEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPV-------------PD--------------HNEPVFRIDSVRKEDKGMYQC   51 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~-------------~~--------------~~~~~l~~~~~~~~d~g~y~C   51 (119)
                      .|+.|+|.|.+.+.+.+.+.|||+.  ...             ..              .....|.|.+++.+|+|.|.|
T Consensus        38 ~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C  117 (279)
T 2wbj_D           38 SGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFYIC  117 (279)
T ss_dssp             TTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCGGGCEEEEE
T ss_pred             CCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCccCCEEEEE
Confidence            4899999999987788899999853  110             00              012379999999999999999


Q ss_pred             EEEcCCC----C--ceeEeeEEEeee---cCCCeeeecC-CccccCCCCcEEEEeEEccC-CC-CeEEEEECCEEccc
Q psy12725         52 VIRNEQE----S--AQASGELKLGGR---FDPPVIKESF-SDETLNPGPNYYFKCIASGN-PT-PEISWYLDGKKLVN  117 (119)
Q Consensus        52 ~~~~~~~----~--~~~~~~~~v~~~---~~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~~  117 (119)
                      .+.+..+    .  ......+.|...   ..+|.+.... ....+..|+.+.|.|.+.+. |. +.+.|+++|..+..
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~  195 (279)
T 2wbj_D          118 SARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS  195 (279)
T ss_dssp             EEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEETTEECCT
T ss_pred             EEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEEECCEECCC
Confidence            9998421    1  112234444321   1255554432 22234578999999999887 43 58999999988753

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.70  E-value=5.9e-16  Score=87.01  Aligned_cols=112  Identities=17%  Similarity=0.314  Sum_probs=73.9

Q ss_pred             CCccEEEEEEeccCCCC---eeEEeeCCccCC--------------------------------CCCCCeEEEecCCCCC
Q psy12725          1 MLALKFFTCKYEGNPVK---TISWMKDGKPVP--------------------------------DHNEPVFRIDSVRKED   45 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~---~v~w~~~~~~~~--------------------------------~~~~~~l~~~~~~~~d   45 (119)
                      +|+.|+|.|.+.+.+.+   .|.|+|++....                                .....+|.|.+++.+|
T Consensus        15 ~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D   94 (225)
T 4fmk_A           15 LGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRGLRVED   94 (225)
T ss_dssp             TTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECSCCGGG
T ss_pred             cCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEccCCHHH
Confidence            59999999999876655   489999753320                                0123579999999999


Q ss_pred             CeEEEEEEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEE-ccCCCCeEEEEECCEE
Q psy12725         46 KGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKK  114 (119)
Q Consensus        46 ~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~  114 (119)
                      +|.|.|.+.+..+...... ..+.+. .+|.....+.......++...+.|.+ .+.|++.+.|++++..
T Consensus        95 ~G~Y~C~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~  162 (225)
T 4fmk_A           95 EGNYTCEFATFPNGTRRGV-TWLRVI-AQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGG  162 (225)
T ss_dssp             CEEEEEEEEEETTEEEEEE-EEEEEE-BCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCC
T ss_pred             CcceEEEEEeCCCcceeee-eeeeee-cCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCcc
Confidence            9999999988654332222 222221 34444444444445566777777765 5567789999987653

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.70  E-value=2.3e-16  Score=90.98  Aligned_cols=109  Identities=17%  Similarity=0.284  Sum_probs=76.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccC------------------------CCCCCCeEEEecCCCCCCeEEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPV------------------------PDHNEPVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~------------------------~~~~~~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      .|+.|+|.|.+.+.+.+.+.|||..  ...                        .......|.|.+++.+|+|.|.|.+.
T Consensus        17 ~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~   96 (256)
T 3tf7_C           17 EGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSAVYFCAVS   96 (256)
T ss_dssp             TTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred             CCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCEEEEEEEe
Confidence            4899999999988888999999832  110                        00123469999999999999999999


Q ss_pred             cCCCCc----eeEeeEEEee-----------------ecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725         55 NEQESA----QASGELKLGG-----------------RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL  110 (119)
Q Consensus        55 ~~~~~~----~~~~~~~v~~-----------------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~  110 (119)
                      +..+..    .....+.|..                 ...++.+...+....+.+|+.++|.|.+.+. .+.+.|++
T Consensus        97 ~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~v~W~k  172 (256)
T 3tf7_C           97 AKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS-HNYMYWYR  172 (256)
T ss_dssp             CTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC-CSEEEEEE
T ss_pred             cCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC-ceEEEEEE
Confidence            864321    1123344432                 1124555555556667799999999999876 67899998

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.70  E-value=1.7e-16  Score=80.52  Aligned_cols=69  Identities=23%  Similarity=0.376  Sum_probs=57.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.|.|.+.|.|+|++..+....         ...|.|.+++.+|.|.|.|.+.|..+.......+.|.
T Consensus        27 ~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  104 (107)
T 3knb_B           27 SGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL  104 (107)
T ss_dssp             TTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEEEEE
Confidence            48999999999999999999999998875432         2469999999999999999999988766655555553

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.70  E-value=2.8e-16  Score=89.76  Aligned_cols=116  Identities=20%  Similarity=0.333  Sum_probs=77.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--c------------cC-------------CCCCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--K------------PV-------------PDHNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~------------~~-------------~~~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|.|.|.+.+ +.+.+.|||..  .            ..             .......|.|.+++.+|+|.|.|.+
T Consensus        16 ~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~   94 (240)
T 3q5y_A           16 KGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFCAS   94 (240)
T ss_dssp             TTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHCEEEEEEE
Confidence            4899999999876 77899999821  0            00             0112347999999999999999999


Q ss_pred             EcCCC---CceeEeeEEEee---ecCCCeeeec-CCccccCCCCcEEEEeEEcc-CCCC-eEEEEECCEEccc
Q psy12725         54 RNEQE---SAQASGELKLGG---RFDPPVIKES-FSDETLNPGPNYYFKCIASG-NPTP-EISWYLDGKKLVN  117 (119)
Q Consensus        54 ~~~~~---~~~~~~~~~v~~---~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~  117 (119)
                      .+...   .......+.+..   ...+|.+... +....+..|+.+.|.|.+.+ .|.+ .+.|+++|..+..
T Consensus        95 ~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~  167 (240)
T 3q5y_A           95 SLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHS  167 (240)
T ss_dssp             ESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             ccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECcC
Confidence            83211   122223444432   1134555432 23334556899999999988 4555 7899999998753

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.70  E-value=1.5e-16  Score=92.84  Aligned_cols=115  Identities=20%  Similarity=0.228  Sum_probs=83.5

Q ss_pred             CCccEEEEEEeccCCC--CeeEEeeC-CccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCcee-EeeEEEee
Q psy12725          1 MLALKFFTCKYEGNPV--KTISWMKD-GKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA-SGELKLGG   70 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~--~~v~w~~~-~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~-~~~~~v~~   70 (119)
                      .|+.+.|.|.+.+ +.  +.+.|+++ +..+...      ....|.|.+++..|.|.|.|.+.+..+.... ...+.+..
T Consensus       103 ~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  181 (292)
T 4dkd_C          103 EDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQK  181 (292)
T ss_dssp             TTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEEC
T ss_pred             CCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeC
Confidence            3889999999987 54  68999997 4443221      2345899999999999999999987554322 44444432


Q ss_pred             ec-CCCeeeecCCccccCCCCcEEEEeEEccCCC-CeEEEEECCEEcc
Q psy12725         71 RF-DPPVIKESFSDETLNPGPNYYFKCIASGNPT-PEISWYLDGKKLV  116 (119)
Q Consensus        71 ~~-~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~~~~~~  116 (119)
                      .. .+|.+...+....+..|+.+.|.|.+.+.|+ +.+.|++++..+.
T Consensus       182 ~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~  229 (292)
T 4dkd_C          182 VIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLA  229 (292)
T ss_dssp             CCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCC
T ss_pred             CCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccc
Confidence            11 2777777776666789999999999988765 4688888876543

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.70  E-value=8.8e-16  Score=87.71  Aligned_cols=116  Identities=17%  Similarity=0.376  Sum_probs=79.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccC-----------------CC--------CCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPV-----------------PD--------HNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~-----------------~~--------~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|.+. .+.+.+.|||..  ...                 ..        .....|.|.+++.+|+|.|.|.+
T Consensus        13 ~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   91 (238)
T 1bec_A           13 TGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQTSVYFCAS   91 (238)
T ss_dssp             TTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccCEEEEEEE
Confidence            489999999985 467899999853  110                 00        11247999999999999999999


Q ss_pred             EcCCC---C--ceeEeeEEEeee---cCCCeeeec-CCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725         54 RNEQE---S--AQASGELKLGGR---FDPPVIKES-FSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLVN  117 (119)
Q Consensus        54 ~~~~~---~--~~~~~~~~v~~~---~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~  117 (119)
                      .+..+   .  ......+.|...   ..+|.+... +....+..|+.+.|.|.+.+. |.+ .+.|+++|..+..
T Consensus        92 ~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~~~  166 (238)
T 1bec_A           92 GGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHS  166 (238)
T ss_dssp             ESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEEECT
T ss_pred             ecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEECCC
Confidence            98631   1  112234444321   125555543 333446689999999999886 655 8999999988753

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.70  E-value=5.1e-16  Score=88.89  Aligned_cols=111  Identities=15%  Similarity=0.204  Sum_probs=73.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccCC------------C---------CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPVP------------D---------HNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~~------------~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.|+|.|.+.+.+.+.+.|+|+.  ....            .         .....|.|.+++.+|+|.|.|.+.+..
T Consensus        15 ~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~   94 (242)
T 2znx_A           15 PGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSX   94 (242)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             CCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEEEeEecCC
Confidence            4899999999998888899999853  1110            0         012369999999999999999999864


Q ss_pred             CCc-eeEeeEEEeeecC----------CCeeeecCCccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         58 ESA-QASGELKLGGRFD----------PPVIKESFSDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        58 ~~~-~~~~~~~v~~~~~----------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      ... .....+.|.....          ++.....+....+.+|+.+.|.|.+.+.+  .+.+.|+++
T Consensus        95 ~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~  161 (242)
T 2znx_A           95 PYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRK  161 (242)
T ss_dssp             SCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEee
Confidence            321 1223344432110          11122222334578999999999998775  468999984

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.70  E-value=3e-16  Score=90.61  Aligned_cols=111  Identities=14%  Similarity=0.254  Sum_probs=72.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccC----------------------------CCCCCCeEEEecCCCCCCeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPV----------------------------PDHNEPVFRIDSVRKEDKGMYQ   50 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~----------------------------~~~~~~~l~~~~~~~~d~g~y~   50 (119)
                      .|+.|+|.|.+.+.+.+.+.|||.  +...                            .......|.|.+++.+|+|.|.
T Consensus        16 ~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~   95 (259)
T 3omz_A           16 TGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIENDSGVYY   95 (259)
T ss_dssp             TTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCGGGCEEEE
T ss_pred             CCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCcccCEEEE
Confidence            489999999998888889999982  1110                            0012346999999999999999


Q ss_pred             EEEEcCCCC---ceeEeeEEEeeecC--------------CCeeeecCCccccCCCCcEEEEeEEccC-CCCeEEEEEC
Q psy12725         51 CVIRNEQES---AQASGELKLGGRFD--------------PPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISWYLD  111 (119)
Q Consensus        51 C~~~~~~~~---~~~~~~~~v~~~~~--------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~  111 (119)
                      |.+.+..+.   ......+.|.....              ++.+...+....+.+|+.+.|.|...+. +.+.+.|+++
T Consensus        96 C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~  174 (259)
T 3omz_A           96 CATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKR  174 (259)
T ss_dssp             EEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECCCSSCEEEEEEE
T ss_pred             EEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCceEEEeee
Confidence            999986541   22223344432111              2344544555667899999999988765 6779999984

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.70  E-value=2.8e-16  Score=91.20  Aligned_cols=116  Identities=19%  Similarity=0.335  Sum_probs=77.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--c----------------------cC----CCCCCCeEEEecCCCCCCeEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--K----------------------PV----PDHNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~----------------------~~----~~~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      .|+.|+|.|.+.+ +.+.+.|||..  .                      .+    .......|.|.+++.+|+|.|.|.
T Consensus        41 ~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~  119 (270)
T 3qib_D           41 QGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCA  119 (270)
T ss_dssp             TTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEE
Confidence            4899999999865 67899999821  1                      00    012345799999999999999999


Q ss_pred             EEcCCC----CceeEeeEEEeee---cCCCeeeec-CCccccCCCCcEEEEeEEcc-CCCC-eEEEEECCEEccc
Q psy12725         53 IRNEQE----SAQASGELKLGGR---FDPPVIKES-FSDETLNPGPNYYFKCIASG-NPTP-EISWYLDGKKLVN  117 (119)
Q Consensus        53 ~~~~~~----~~~~~~~~~v~~~---~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~~~~~  117 (119)
                      +.+...    .......+.+...   ..+|.+... +....+..|+.+.|.|.+.+ .|.+ .+.|+++|..+..
T Consensus       120 ~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~  194 (270)
T 3qib_D          120 SSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS  194 (270)
T ss_dssp             EESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             EecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCC
Confidence            986421    1112234444321   114544432 22333456899999999988 5656 7999999998754

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.69  E-value=3.8e-17  Score=99.01  Aligned_cols=113  Identities=18%  Similarity=0.306  Sum_probs=78.2

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC-------CCCeEEEecC-CCCCCeEEEEEEEcCCCCce-eEeeEEEeeec
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSV-RKEDKGMYQCVIRNEQESAQ-ASGELKLGGRF   72 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~-~~~d~g~y~C~~~~~~~~~~-~~~~~~v~~~~   72 (119)
                      |+.+.|.|.+.|.|.+.|.|+|++..+...       ....|.|... +.+|.|.|.|.+.|..+... ....+.+..  
T Consensus        23 g~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~--  100 (384)
T 3kld_A           23 EKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAY--  100 (384)
T ss_dssp             CSEEEECCEEEEESCCEEEEEETTEECCC----CEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEE--
T ss_pred             CCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEEEECCEEEEcCCCCcccCEEEEEEEEcCcccEEecceEEEEec--
Confidence            788999999999999999999999887542       1345666665 67899999999999865432 123333322  


Q ss_pred             CCCeeeecCCccccCCCCcEEEEeEEc-cCCCCeEEEEECCEEcc
Q psy12725         73 DPPVIKESFSDETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKLV  116 (119)
Q Consensus        73 ~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~~  116 (119)
                      .++..........+.+|+.+.|.|... +.+.+.+.|++++..+.
T Consensus       101 ~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~  145 (384)
T 3kld_A          101 LENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSY  145 (384)
T ss_dssp             ECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECC
T ss_pred             ccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCE
Confidence            122112122234567899999999653 34567899999987754

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.69  E-value=1.1e-15  Score=90.31  Aligned_cols=114  Identities=18%  Similarity=0.344  Sum_probs=79.3

Q ss_pred             CCccEEEEEEeccCCCC-----eeEEeeCCccCCC---------------------------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNPVK-----TISWMKDGKPVPD---------------------------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~-----~v~w~~~~~~~~~---------------------------~~~~~l~~~~~~~~d~g~   48 (119)
                      +|+.|+|.|.+.+.+.+     .+.|+|++.....                           ....+|.|.+++.+|+|.
T Consensus        14 ~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~   93 (313)
T 4fqp_A           14 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGN   93 (313)
T ss_dssp             TTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSCCGGGCEE
T ss_pred             cCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcCChhhCEE
Confidence            59999999999876544     4899998753210                           123569999999999999


Q ss_pred             EEEEEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEE-ccCCCCeEEEEECCEEcc
Q psy12725         49 YQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        49 y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~  116 (119)
                      |.|.+.+.. .......+.+.+. .+|..........+..++...+.|.+ .+.|.+.+.|++++..+.
T Consensus        94 Y~C~v~~~~-~~~~~~~~~l~v~-~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~  160 (313)
T 4fqp_A           94 YTCLFVTFP-QGSRSVDIWLRVL-AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMP  160 (313)
T ss_dssp             EEEEEECSS-SCEEEEEEEECCB-BCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEE
T ss_pred             EEEEEeecc-Ccceeeeeeeeec-cCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCcccc
Confidence            999886432 2223333444332 35555555555566778888889976 467889999999876543

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.69  E-value=1.2e-16  Score=94.06  Aligned_cols=114  Identities=22%  Similarity=0.282  Sum_probs=76.5

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeCCccCC---------------C------------CCCCeEEEecCCCCCCeEEEEE
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKDGKPVP---------------D------------HNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~~~~~~---------------~------------~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      .|+.+.|.|.+.+. +.+.|.|+|++....               .            ....+|.|.+++.+|+|.|.|.
T Consensus        13 ~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   92 (308)
T 4fom_A           13 WGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSGKYICK   92 (308)
T ss_dssp             TTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCEEEEEE
T ss_pred             cCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCEEEEEE
Confidence            48999999998654 445799998542210               0            1235799999999999999999


Q ss_pred             EEcCC-CCceeEeeEEEeeecCCCe-eeecCCccccCCCCcEEEEeEE-ccCCCCeEEEEECCEEcc
Q psy12725         53 IRNEQ-ESAQASGELKLGGRFDPPV-IKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        53 ~~~~~-~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~  116 (119)
                      +.+.. +.......+.+..  .++. ....+.......|+.+.|.|.+ .+.|.+.+.|++++..+.
T Consensus        93 a~n~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~  157 (308)
T 4fom_A           93 AVTFPLGNAQSSTTVTVLV--EPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEME  157 (308)
T ss_dssp             EEETTTEEEEEEEEEEEEB--CCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCC
T ss_pred             EeeCCCcceeeeeEEEeee--ccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccc
Confidence            98753 2233333333332  2222 2223334445677899999975 678999999999987664

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.69  E-value=5.7e-16  Score=88.81  Aligned_cols=111  Identities=16%  Similarity=0.285  Sum_probs=73.4

Q ss_pred             CCccEEEEEEeccCC-----CCeeEEeeCC--ccCC-------------C--------CCCCeEEEecCCCCCCeEEEEE
Q psy12725          1 MLALKFFTCKYEGNP-----VKTISWMKDG--KPVP-------------D--------HNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~-----~~~v~w~~~~--~~~~-------------~--------~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      .|+.|+|.|.+.+.+     .+.+.|+|+.  ..+.             .        .....|.|.+++.+|+|.|.|.
T Consensus        15 ~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   94 (247)
T 1svz_A           15 LGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCF   94 (247)
T ss_dssp             TTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHHCEEEEEE
Confidence            489999999998876     6899999843  1110             0        0123699999999999999999


Q ss_pred             EEcCCCC-ceeEeeEEEeeecC----------CCeeeecCCccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         53 IRNEQES-AQASGELKLGGRFD----------PPVIKESFSDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        53 ~~~~~~~-~~~~~~~~v~~~~~----------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      +.+.... ......+.|.....          ++.....+....+.+|+.+.|.|.+.+.+  .+.+.|+++
T Consensus        95 ~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~  166 (247)
T 1svz_A           95 QGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQ  166 (247)
T ss_dssp             ECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             EccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEe
Confidence            9886432 11223444432110          12122223334588999999999998874  458999985

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.69  E-value=1.7e-16  Score=79.62  Aligned_cols=68  Identities=22%  Similarity=0.458  Sum_probs=56.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.|.|.+.+.|++++..+...           ....|.|.+++.+|.|.|.|.+.|..+.......+.|
T Consensus        19 ~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   97 (100)
T 3knb_A           19 EGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI   97 (100)
T ss_dssp             TTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCCEEEEEEEEEE
Confidence            4899999999999999999999999877542           1246899999999999999999999876655555555

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.69  E-value=6e-16  Score=89.20  Aligned_cols=110  Identities=19%  Similarity=0.348  Sum_probs=75.8

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeCC--ccCC----------------------------CCCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKDG--KPVP----------------------------DHNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~~--~~~~----------------------------~~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.|+|.|.+.+.  +.+.+.|||..  ..+.                            ......|.|.+++.+|+|.
T Consensus        20 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~   99 (256)
T 3juy_B           20 PGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAV   99 (256)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEECCCCcccCEE
Confidence            48999999999873  56789999732  1100                            0112359999999999999


Q ss_pred             EEEEEEcC------------CCCceeEeeEEEeeecC------------CCeeeecCCccccCCCCcEEEEeEEccCCC-
Q psy12725         49 YQCVIRNE------------QESAQASGELKLGGRFD------------PPVIKESFSDETLNPGPNYYFKCIASGNPT-  103 (119)
Q Consensus        49 y~C~~~~~------------~~~~~~~~~~~v~~~~~------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-  103 (119)
                      |.|.+.+.            .........+.|.....            ++.+...+....+.+|+.++|.|.+.+.+. 
T Consensus       100 Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~  179 (256)
T 3juy_B          100 YYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERATFSCRSSHSIRS  179 (256)
T ss_dssp             EEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEEEEEEESSCCTT
T ss_pred             EEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEEEEEEECCCcCC
Confidence            99999886            11122233444432111            344555566667889999999999988776 


Q ss_pred             CeEEEEE
Q psy12725        104 PEISWYL  110 (119)
Q Consensus       104 ~~~~W~~  110 (119)
                      +.+.|++
T Consensus       180 ~~v~W~k  186 (256)
T 3juy_B          180 RRVAWYQ  186 (256)
T ss_dssp             CCEEEEE
T ss_pred             eeEEEEE
Confidence            7999998

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.68  E-value=4.7e-16  Score=87.18  Aligned_cols=116  Identities=17%  Similarity=0.313  Sum_probs=72.6

Q ss_pred             CCccEEEEEEeccCC----CCeeEEeeCCccCCCC--------CCCeEEEe---cCCCCC---CeEEEEEEEcCCCCcee
Q psy12725          1 MLALKFFTCKYEGNP----VKTISWMKDGKPVPDH--------NEPVFRID---SVRKED---KGMYQCVIRNEQESAQA   62 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~----~~~v~w~~~~~~~~~~--------~~~~l~~~---~~~~~d---~g~y~C~~~~~~~~~~~   62 (119)
                      .|+.+.|.|.+.+.+    ...|.|+|++..+...        ....+.+.   .+...|   +|.|+|.+.+..+....
T Consensus        17 ~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~~   96 (207)
T 1l6x_A           17 ISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPI   96 (207)
T ss_dssp             TTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCE
T ss_pred             cCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcce
Confidence            489999999998764    3489999998654321        12233332   234444   99999999997654322


Q ss_pred             EeeEEEe-eecCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEEcc
Q psy12725         63 SGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLV  116 (119)
Q Consensus        63 ~~~~~v~-~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~  116 (119)
                      ...+.+. ....+|.+...+.......|..+.|.|.+.|. |.+ .+.|+++|..+.
T Consensus        97 ~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~  153 (207)
T 1l6x_A           97 EKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPEN  153 (207)
T ss_dssp             EEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             EEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeecc
Confidence            2222210 11235665544433222345569999999885 443 899999998764

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.68  E-value=4.8e-16  Score=94.10  Aligned_cols=115  Identities=19%  Similarity=0.232  Sum_probs=82.4

Q ss_pred             CCccEEEEEEe-ccCCCCeeEEeeCCc---cCC----------CCCCCeEEEecCCCCCCe---EEEEEEEcCCCCceeE
Q psy12725          1 MLALKFFTCKY-EGNPVKTISWMKDGK---PVP----------DHNEPVFRIDSVRKEDKG---MYQCVIRNEQESAQAS   63 (119)
Q Consensus         1 ~g~~~~l~c~~-~~~~~~~v~w~~~~~---~~~----------~~~~~~l~~~~~~~~d~g---~y~C~~~~~~~~~~~~   63 (119)
                      .|+.+.|.|.+ .+.|.+.+.|++++.   ...          ......|.|..++..|.|   .|.|.+.+..+.....
T Consensus       114 ~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~  193 (395)
T 1bih_A          114 EGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVV  193 (395)
T ss_dssp             TTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEE
T ss_pred             eCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEE
Confidence            38899999996 677889999999751   111          123457999999999999   9999999987654433


Q ss_pred             eeEEE-eeec---------CCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         64 GELKL-GGRF---------DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        64 ~~~~v-~~~~---------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ..... ....         .+|.+  .+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+..
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~  255 (395)
T 1bih_A          194 LVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNG  255 (395)
T ss_dssp             EEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCC
T ss_pred             eeeEEecccccccccccCCcCcee--cCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCC
Confidence            22211 1100         01222  23345678999999999999999999999999988753

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.68  E-value=9.9e-17  Score=103.99  Aligned_cols=114  Identities=19%  Similarity=0.322  Sum_probs=50.1

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeCCccCCCC-----------------CCCeEEEecCCCCCCeEEEEEEEcCCCCce
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKDGKPVPDH-----------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ   61 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~~~~~~~~-----------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~   61 (119)
                      .|+.+.|.|.+.+.  +...+.|++++..+...                 ....|.|..++..|.|.|.|.+.+..+...
T Consensus       238 ~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~  317 (772)
T 3v2a_R          238 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK  317 (772)
T ss_dssp             TTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEE
T ss_pred             cCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCccee
Confidence            48999999999874  45689999987754221                 124689999999999999999998766544


Q ss_pred             eEeeEEEeeecCCCeeeecC---CccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         62 ASGELKLGGRFDPPVIKESF---SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        62 ~~~~~~v~~~~~~~~~~~~~---~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ....+.+.   .+|.+...+   ....+.+|+.+.|.|.+.+.|.+.+.|+++|..+..
T Consensus       318 ~~~~l~V~---~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~  373 (772)
T 3v2a_R          318 NSTFVRVH---EKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLES  373 (772)
T ss_dssp             EEEEEEEE---CCCC--------------------------------------------
T ss_pred             EEEEEEEe---CCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCC
Confidence            44445443   345443322   234578899999999999989999999999987653

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.68  E-value=3e-16  Score=90.95  Aligned_cols=115  Identities=17%  Similarity=0.293  Sum_probs=76.3

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--ccC------C-------------C---------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KPV------P-------------D---------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~~------~-------------~---------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.|+|.|.+.+.+  .+.+.|||+.  ..+      .             .         .....|.|.+++.+|+|.
T Consensus        20 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~   99 (261)
T 2xqy_G           20 PGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLTSEDSAV   99 (261)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEE
T ss_pred             CCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCCcccCeE
Confidence            489999999998765  5789999863  211      0             0         012479999999999999


Q ss_pred             EEEEEEcCCCC---ceeEeeEEEee-ecCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEEc
Q psy12725         49 YQCVIRNEQES---AQASGELKLGG-RFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKL  115 (119)
Q Consensus        49 y~C~~~~~~~~---~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~  115 (119)
                      |.|.+.+....   ......+.|.. ...+|.+........+..|+.+.|.|.+.+. |.+ .+.|++++..+
T Consensus       100 Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~  172 (261)
T 2xqy_G          100 YYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSS  172 (261)
T ss_dssp             EEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCT
T ss_pred             EEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCCcC
Confidence            99999985321   11223444432 1124555443333346679999999999875 666 89999988654

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.68  E-value=7.3e-16  Score=88.77  Aligned_cols=110  Identities=19%  Similarity=0.309  Sum_probs=72.9

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeCC--ccCC------------CC---------CCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKDG--KPVP------------DH---------NEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~~--~~~~------------~~---------~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.+.+.  +.+.+.|||..  ....            ..         ....|.|.+++.+|+|.|.|.+.+
T Consensus        16 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   95 (256)
T 3ux9_B           16 PGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADYYCQVRD   95 (256)
T ss_dssp             TTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEEEEEEEE
Confidence            48999999999876  67899999842  1110            00         123699999999999999999988


Q ss_pred             CCCC---ceeEeeEEEeeecC------------------CCeeeecCCccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         56 EQES---AQASGELKLGGRFD------------------PPVIKESFSDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        56 ~~~~---~~~~~~~~v~~~~~------------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      ..+.   ......+.|.....                  .+.+.. +....+.+|+.+.|.|.+.+.+  .+.+.|+++
T Consensus        96 ~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~  173 (256)
T 3ux9_B           96 NNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVE-SGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQ  173 (256)
T ss_dssp             TTTTEEEECCCEEEEEC----------------------CCEEEE-ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             CCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEc-CCCeEEcCCCeEEEEEEEeCCcccccEEEEEEE
Confidence            5432   11223344432110                  112222 2334578999999999998776  678999985

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=4.7e-16  Score=80.10  Aligned_cols=88  Identities=27%  Similarity=0.424  Sum_probs=65.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFD   73 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~   73 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...       ....|.|.+++.+|.|.|.|.+.|..+.......+.|... .
T Consensus        22 ~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~-~  100 (118)
T 2eo9_A           22 VDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEF-G  100 (118)
T ss_dssp             TTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECSSCEEEEECCEEEECC-S
T ss_pred             CCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCCcEEEEEEEEEEeC-C
Confidence            4889999999999999999999998877532       2457999999999999999999999877666666666532 2


Q ss_pred             CCeeeecCCccccCCC
Q psy12725         74 PPVIKESFSDETLNPG   89 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g   89 (119)
                      .|.+...+....+.+|
T Consensus       101 ~p~~~~~~~~~~~~~G  116 (118)
T 2eo9_A          101 VPVQPPRPTDPNLIPS  116 (118)
T ss_dssp             CCCCCCCCCCCCCCCC
T ss_pred             CCccCCCCCCCccCCC
Confidence            2333333434444444

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.67  E-value=1e-15  Score=94.98  Aligned_cols=116  Identities=15%  Similarity=0.199  Sum_probs=79.8

Q ss_pred             CCccEEEEEEeccCCC---CeeEEeeCCccCCC-------C------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEe
Q psy12725          1 MLALKFFTCKYEGNPV---KTISWMKDGKPVPD-------H------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG   64 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~---~~v~w~~~~~~~~~-------~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~   64 (119)
                      .|+.+.|.|.+.+.+.   +.|.| +++.....       .      ....|.|..+...|.|.|+|.+.+..+......
T Consensus       261 ~G~~v~L~C~~~g~~p~~~~~i~W-~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~  339 (475)
T 1iga_A          261 LGSEANLTCTLTGLRDASGVTFTW-TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTA  339 (475)
T ss_pred             cCCceEEEEEEEcccCCCceEEEE-CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEE
Confidence            4899999999987643   58999 43322211       0      113588899999999999999999876543333


Q ss_pred             eEEEeeecCCCeeeecCCc-cccCCCCcEEEEeEEccCCC--CeEEEEECCEEccc
Q psy12725         65 ELKLGGRFDPPVIKESFSD-ETLNPGPNYYFKCIASGNPT--PEISWYLDGKKLVN  117 (119)
Q Consensus        65 ~~~v~~~~~~~~~~~~~~~-~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~~~~~~  117 (119)
                      .+.+.....+|.+...+.. ..+..|+.+.|.|.+.+.++  +.+.|+++|..+..
T Consensus       340 ~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~  395 (475)
T 1iga_A          340 TLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPR  395 (475)
T ss_pred             EeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCC
Confidence            3322122346766654433 23678999999999988643  48999999998754

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.67  E-value=8.6e-16  Score=88.87  Aligned_cols=108  Identities=16%  Similarity=0.302  Sum_probs=77.7

Q ss_pred             CCccEEEEEEecc-CCCC--eeEEeeCCccCCCC---CCCeEEEecC---CCCCCeE--EEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEG-NPVK--TISWMKDGKPVPDH---NEPVFRIDSV---RKEDKGM--YQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~-~~~~--~v~w~~~~~~~~~~---~~~~l~~~~~---~~~d~g~--y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+ .|.+  .+.|++++..+...   ....+.+..+   +..|.|.  |.|.+.+..+.......+.+.
T Consensus        17 ~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~~l~V~   96 (265)
T 2oz4_A           17 VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIY   96 (265)
T ss_dssp             TTEEEEEEEEEESCSCGGGCEEEEEETTEECCCEEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cCCCEEEEEEccCCCCCcceEEEEEeCCEECCceEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcEEEEEEEEe
Confidence            4899999999998 6766  99999999877531   2345555555   6778775  999999986655545555553


Q ss_pred             eecCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEc
Q psy12725         70 GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL  115 (119)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~  115 (119)
                      .. .+|.+..  ....+.+|+.+.|.|.+.  |.+.+.|  +|..+
T Consensus        97 ~~-p~p~~~~--~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~  135 (265)
T 2oz4_A           97 SF-PAPNVIL--TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPA  135 (265)
T ss_dssp             CC-CCCEEEE--SCSEEETTCEEEEEEECC--TTSEEEE--SSCSS
T ss_pred             CC-CCceeec--CCceecCCCcEEEEEEcc--CCCEEEE--CCEEc
Confidence            21 2344443  344577899999999987  7889999  77655

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.67  E-value=9.6e-16  Score=88.20  Aligned_cols=111  Identities=18%  Similarity=0.256  Sum_probs=76.1

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeC--CccC-------------------CC---------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKD--GKPV-------------------PD---------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~--~~~~-------------------~~---------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.|+|.|.+.+.+  .+.+.|||.  +..+                   ..         .....|.|.+++.+|+|.
T Consensus        15 ~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~   94 (253)
T 3uzq_A           15 PGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLTSGDTAV   94 (253)
T ss_dssp             TTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCCcccCEE
Confidence            489999999998753  678999982  1110                   00         012349999999999999


Q ss_pred             EEEEEEcCCCCc-eeEeeEEEeee------------cCCCeeeecCCccccCCCCcEEEEeEEccCCCC----eEEEEEC
Q psy12725         49 YQCVIRNEQESA-QASGELKLGGR------------FDPPVIKESFSDETLNPGPNYYFKCIASGNPTP----EISWYLD  111 (119)
Q Consensus        49 y~C~~~~~~~~~-~~~~~~~v~~~------------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~----~~~W~~~  111 (119)
                      |.|.+.+..... .....+.+...            ..++.+...+....+.+|+.+.|.|.+.+.+.+    .+.|+++
T Consensus        95 Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~  174 (253)
T 3uzq_A           95 YYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQ  174 (253)
T ss_dssp             EEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEE
T ss_pred             EEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEE
Confidence            999999854332 22334444320            124455555555678899999999999888776    8999984

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.67  E-value=5.4e-16  Score=87.62  Aligned_cols=114  Identities=19%  Similarity=0.417  Sum_probs=75.7

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCCc--cC---------------------CC---------CCCCeEEEecCCCCCC
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDGK--PV---------------------PD---------HNEPVFRIDSVRKEDK   46 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~~--~~---------------------~~---------~~~~~l~~~~~~~~d~   46 (119)
                      .|+.|+|.|.+.+.+  ...+.|||...  ..                     ..         ....+|.|.+++.+|+
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds   93 (221)
T 3m8o_H           14 PGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSLKSDDT   93 (221)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             CCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCCCHHHC
Confidence            489999999998643  57899997321  10                     00         0112599999999999


Q ss_pred             eEEEEEEEcCC--CCceeEeeEEEee-ecCCCeeeecCCccccCCCCcEEEEeEEcc-CCC-C-eEEEEECCEEc
Q psy12725         47 GMYQCVIRNEQ--ESAQASGELKLGG-RFDPPVIKESFSDETLNPGPNYYFKCIASG-NPT-P-EISWYLDGKKL  115 (119)
Q Consensus        47 g~y~C~~~~~~--~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~-~~~W~~~~~~~  115 (119)
                      |.|.|.+.+..  ........+.+.. ...+|.+........ .+|+.+.|.|.+.+ .|. + .+.|+++|..+
T Consensus        94 G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~  167 (221)
T 3m8o_H           94 AMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVTWSESGQGV  167 (221)
T ss_dssp             EEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTC
T ss_pred             EEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEEEEECCEEC
Confidence            99999998863  1223334455532 123455542222222 78999999999987 565 4 89999988655

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.67  E-value=1.4e-15  Score=86.71  Aligned_cols=116  Identities=17%  Similarity=0.270  Sum_probs=72.7

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--ccCC----------------CC-----------CCCeEEEecCCCCCCeEE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KPVP----------------DH-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~~~----------------~~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      .|+.|+|.|.+.+.+  ...+.|||..  ....                ..           ....|.|.+++.+|+|.|
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   93 (232)
T 1dn0_B           14 PSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVY   93 (232)
T ss_dssp             TTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCcccCEEE
Confidence            489999999998754  5689999842  1110                00           112799999999999999


Q ss_pred             EEEEEcCC--CC----ceeEeeEEEee-ecCCCeeeecCCccccCCC-CcEEEEeEEccC-CCC-eEEEEE-CCEEcc
Q psy12725         50 QCVIRNEQ--ES----AQASGELKLGG-RFDPPVIKESFSDETLNPG-PNYYFKCIASGN-PTP-EISWYL-DGKKLV  116 (119)
Q Consensus        50 ~C~~~~~~--~~----~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~g-~~~~l~C~~~~~-p~~-~~~W~~-~~~~~~  116 (119)
                      .|.+.+..  +.    ......+.|.. ...+|.+........+..| +.+.|.|.+.+. |.+ .+.|++ +|..+.
T Consensus        94 ~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~  171 (232)
T 1dn0_B           94 YCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDIS  171 (232)
T ss_dssp             EEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEEC
T ss_pred             EEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCcee
Confidence            99998421  11    11233444432 1123554432222234577 899999999876 766 899999 887653

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.66  E-value=2.6e-16  Score=91.02  Aligned_cols=108  Identities=18%  Similarity=0.228  Sum_probs=77.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-CCCeEEEecCCCCCCeEEEEEEEcCC-CCce-eEeeEEEeeecCCCee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-NEPVFRIDSVRKEDKGMYQCVIRNEQ-ESAQ-ASGELKLGGRFDPPVI   77 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-~~~~l~~~~~~~~d~g~y~C~~~~~~-~~~~-~~~~~~v~~~~~~~~~   77 (119)
                      .|+.+.|.|.+.  |.+.+.|  ++..+... ....|.+..+...|.|.|.|.+.+.. +... ....+.+.+. .+|.+
T Consensus       112 ~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~-~~p~~  186 (265)
T 2oz4_A          112 EGTEVTVKCEAH--PRAKVTL--NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL-YGPRL  186 (265)
T ss_dssp             TTCEEEEEEECC--TTSEEEE--SSCSSSCCSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEE-EEEEC
T ss_pred             CCCcEEEEEEcc--CCCEEEE--CCEEccCCCCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEE-eCCcc
Confidence            388999999998  8889999  77766432 34567788888899999999998543 4433 1233333332 23444


Q ss_pred             eec--CCccccCCCCcEEEEeEEccCCCCeEEEEECCE
Q psy12725         78 KES--FSDETLNPGPNYYFKCIASGNPTPEISWYLDGK  113 (119)
Q Consensus        78 ~~~--~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~  113 (119)
                      ...  +....+.+|+.+.|.|.+.|.|.|.+.|++++.
T Consensus       187 ~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~  224 (265)
T 2oz4_A          187 DERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT  224 (265)
T ss_dssp             CGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTT
T ss_pred             ccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCc
Confidence            332  234467889999999999999999999999986

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.66  E-value=2.4e-15  Score=91.15  Aligned_cols=116  Identities=13%  Similarity=0.165  Sum_probs=80.2

Q ss_pred             CCccEEEEEEeccC---CC-CeeEEeeCCccCCCC--------------CCCeEEEecCCCCCCeEEEEEEEcCCCCcee
Q psy12725          1 MLALKFFTCKYEGN---PV-KTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA   62 (119)
Q Consensus         1 ~g~~~~l~c~~~~~---~~-~~v~w~~~~~~~~~~--------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~   62 (119)
                      +|+.++|.|.+.+.   |. ..|.|++++..+...              ....|.|..++..|.|.|+|.+.+.......
T Consensus       182 ~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~  261 (376)
T 2aty_A          182 ITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPI  261 (376)
T ss_pred             eCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCCce
Confidence            48899999999876   32 369999987554210              1135788888889999999999987543322


Q ss_pred             EeeEEEe-eecCCCeeeecCCccccCCCCcEEEEeEEccCCC--CeEEEEECCEEcc
Q psy12725         63 SGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGNPT--PEISWYLDGKKLV  116 (119)
Q Consensus        63 ~~~~~v~-~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~~~~~  116 (119)
                      ...+.+. ....+|.+...+.......|+.+.|.|.+.+..+  ..+.|++||..+.
T Consensus       262 ~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~  318 (376)
T 2aty_A          262 EKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAE  318 (376)
T ss_pred             EEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECC
Confidence            2222210 1124677776665544556889999999988633  4899999998764

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.66  E-value=2.2e-16  Score=91.31  Aligned_cols=114  Identities=17%  Similarity=0.298  Sum_probs=69.2

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--ccC-------------------CC---------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KPV-------------------PD---------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~~-------------------~~---------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.|+|.|.+.+.+  .+.+.|||..  ..+                   ..         .....|.|.+++.+|+|.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~   93 (257)
T 3bn9_D           14 PGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAEDTAV   93 (257)
T ss_dssp             TTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCGGGCEE
T ss_pred             CCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCChhhCEE
Confidence            489999999998764  5789999843  111                   00         012479999999999999


Q ss_pred             EEEEEEcCCC----------C---ceeEeeEEEee-ecCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECC
Q psy12725         49 YQCVIRNEQE----------S---AQASGELKLGG-RFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDG  112 (119)
Q Consensus        49 y~C~~~~~~~----------~---~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~  112 (119)
                      |.|.+.+..+          .   ......+.|.. ...+|.+........+..|+.+.|.|.+.+. |.+ .+.|++++
T Consensus        94 Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi~v~W~k~g  173 (257)
T 3bn9_D           94 YYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGA  173 (257)
T ss_dssp             EEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCCEEEETTTT
T ss_pred             EEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCcEEEEeeCC
Confidence            9999998643          1   11223444432 1124555433322335678999999999876 766 89999988


Q ss_pred             EE
Q psy12725        113 KK  114 (119)
Q Consensus       113 ~~  114 (119)
                      ..
T Consensus       174 ~~  175 (257)
T 3bn9_D          174 LT  175 (257)
T ss_dssp             CC
T ss_pred             Cc
Confidence            65

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.66  E-value=2.1e-15  Score=77.19  Aligned_cols=69  Identities=25%  Similarity=0.261  Sum_probs=57.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+.|.+.+.|+|++..+....         ...|.|.+++.+|.|.|+|.+.|..+.......+.+.
T Consensus        21 ~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~   98 (114)
T 2cqv_A           21 AGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV   98 (114)
T ss_dssp             TTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEE
T ss_pred             CCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEEEEE
Confidence            48999999999999999999999998775321         3579999999999999999999988766555556654

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.65  E-value=2e-15  Score=86.95  Aligned_cols=116  Identities=16%  Similarity=0.354  Sum_probs=77.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCc--cC-----------------CC--------CCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGK--PV-----------------PD--------HNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~--~~-----------------~~--------~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|.|.|.+. .+.+.+.|||...  ..                 ..        .....|.|.+++.+|+|.|.|.+
T Consensus        17 ~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   95 (252)
T 1oga_E           17 EGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYLCAS   95 (252)
T ss_dssp             TTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEEEEEEE
T ss_pred             CCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhhCEEEEEEE
Confidence            489999999985 3578999998431  00                 00        12357999999999999999999


Q ss_pred             EcCC---CCceeEeeEEEeee---cCCCeeeec-CCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725         54 RNEQ---ESAQASGELKLGGR---FDPPVIKES-FSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLVN  117 (119)
Q Consensus        54 ~~~~---~~~~~~~~~~v~~~---~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~  117 (119)
                      .+..   ........+.|...   ..+|.+... +....+..|+.+.|.|.+.+. |.+ .+.|+++|..+..
T Consensus        96 ~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~~  168 (252)
T 1oga_E           96 SSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS  168 (252)
T ss_dssp             ESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECS
T ss_pred             ecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECCC
Confidence            9862   11122234444321   135655543 222234568999999999886 644 8999999987753

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.65  E-value=2.1e-15  Score=87.89  Aligned_cols=109  Identities=13%  Similarity=0.256  Sum_probs=77.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCC----CCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVP----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPV   76 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~----~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~   76 (119)
                      .|+.+.|.|.+.+    .+.|++++....    ......|.|.+++..|.|.|.|.+.+..+.......+.+..   +|.
T Consensus        18 ~G~~v~L~C~~~~----~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~---~~~   90 (289)
T 3ejj_X           18 PGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKD---PAH   90 (289)
T ss_dssp             TTCCEEEEEECSS----CCEEECSCSSSSEECCCSSCCEEEESSCCGGGCEEEEEECCC-----CEEEEEEECC---SSC
T ss_pred             CCCCEEEEEEeCC----cEEEccCCCceEEEeccCCccEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEeC---CCc
Confidence            4899999999976    499998765321    23567899999999999999999987765544455555532   332


Q ss_pred             -eeecCCccccCCCCcEEEEeEEccCCCCe-EEEEE-CCEEcc
Q psy12725         77 -IKESFSDETLNPGPNYYFKCIASGNPTPE-ISWYL-DGKKLV  116 (119)
Q Consensus        77 -~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~W~~-~~~~~~  116 (119)
                       +...+....+.+|+.+.|.|.+.+.+.+. +.|++ ++..+.
T Consensus        91 ~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~  133 (289)
T 3ejj_X           91 SWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVL  133 (289)
T ss_dssp             SEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECC
T ss_pred             ceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecC
Confidence             44445556678999999999998876664 99985 666553

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.65  E-value=1.9e-15  Score=86.54  Aligned_cols=115  Identities=15%  Similarity=0.258  Sum_probs=75.1

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeCC--ccCC-----------------CC-----------CCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKDG--KPVP-----------------DH-----------NEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~~--~~~~-----------------~~-----------~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.|+|.|.+.+.  +...+.|||..  ..+.                 ..           ....|.|.+++.+|+|.
T Consensus        15 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   94 (242)
T 1hxm_B           15 LSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDIAT   94 (242)
T ss_dssp             TTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCCCcccCEE
Confidence            48999999999875  56789999842  2110                 00           12468999999999999


Q ss_pred             EEEEEEcCCC-C------ceeEeeEEEeeec----CCCeeeec-CCccccCCCCcEEEEeEEccC-CC-CeEEEEECCE-
Q psy12725         49 YQCVIRNEQE-S------AQASGELKLGGRF----DPPVIKES-FSDETLNPGPNYYFKCIASGN-PT-PEISWYLDGK-  113 (119)
Q Consensus        49 y~C~~~~~~~-~------~~~~~~~~v~~~~----~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~~~-  113 (119)
                      |.|.+.+... .      ......+.|....    .+|.+... +....+..|+.+.|.|.+.+. |. +.+.|++++. 
T Consensus        95 Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~  174 (242)
T 1hxm_B           95 YYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSN  174 (242)
T ss_dssp             EEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSC
T ss_pred             EEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCCeEEEEEcCCCE
Confidence            9999987531 1      1122344443210    02333322 233345679999999999876 54 5899999986 


Q ss_pred             Ec
Q psy12725        114 KL  115 (119)
Q Consensus       114 ~~  115 (119)
                      .+
T Consensus       175 ~l  176 (242)
T 1hxm_B          175 TI  176 (242)
T ss_dssp             CC
T ss_pred             ee
Confidence            44

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=6.6e-16  Score=76.83  Aligned_cols=69  Identities=29%  Similarity=0.578  Sum_probs=57.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+.|.+.+.|+|++..+.......|.|.+++..|.|.|.|.+.|..+....+..+.+.
T Consensus        24 ~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~~~v~   92 (96)
T 2ens_A           24 PGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSIS   92 (96)
T ss_dssp             TTCEEEEECCCSSCSSCCCCCEESSSBCSSCCCSEEEEESCCTTTCEEEECEECCSSCCCEECCCEEEE
T ss_pred             CCCeEEEEEEEccCCCCEEEEEECCEECcCCCCCEEEECCCCcccCEEEEEEEEeCCCCcEEEEEEEEE
Confidence            489999999999988889999999998877778899999999999999999999965444444444443

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.65  E-value=2.4e-15  Score=74.12  Aligned_cols=59  Identities=22%  Similarity=0.522  Sum_probs=53.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+.......|.|.+++..|.|.|.|.+.|..+.
T Consensus        17 ~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~   75 (91)
T 3bfo_A           17 PGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDS   75 (91)
T ss_dssp             TTSCEEEECEEECSSCCEEEEEETTEECTTCCSSEEEESSCCGGGCEEEEEEEECSSCE
T ss_pred             CCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCCCeEEECCCCHHhCEEEEEEEEcCCCC
Confidence            48999999999999999999999999887777789999999999999999999998763

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=3e-15  Score=76.17  Aligned_cols=70  Identities=27%  Similarity=0.476  Sum_probs=57.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------C--CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------E--PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~--~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....         .  ..|.|..++..|.|.|.|.+.|..+.......+.|.
T Consensus        22 ~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~  101 (110)
T 2dm2_A           22 EGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQ  101 (110)
T ss_dssp             TTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCCEEECCCEEEE
T ss_pred             CCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEEE
Confidence            48899999999999999999999988775421         1  268999999999999999999998877666666665


Q ss_pred             e
Q psy12725         70 G   70 (119)
Q Consensus        70 ~   70 (119)
                      .
T Consensus       102 ~  102 (110)
T 2dm2_A          102 A  102 (110)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.64  E-value=2.3e-17  Score=101.26  Aligned_cols=115  Identities=14%  Similarity=0.194  Sum_probs=79.8

Q ss_pred             CCccEEEEEEeccCC----CCeeEEeeCCccCCCC--------------CCCeEEEecCCCCCCeEEEEEEEcCCCCcee
Q psy12725          1 MLALKFFTCKYEGNP----VKTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA   62 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~----~~~v~w~~~~~~~~~~--------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~   62 (119)
                      .|+.+.|.|.+.+.+    .+.|.|++++..+...              ....|.|..+...|.|.|.|.+.|..+....
T Consensus       244 ~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  323 (434)
T 1igy_B          244 ITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPI  323 (434)
T ss_dssp             TTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCC
T ss_pred             cCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCce
Confidence            489999999999873    3589999988665321              1246888888889999999999988664422


Q ss_pred             EeeEEE--eeecCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEEcc
Q psy12725         63 SGELKL--GGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLV  116 (119)
Q Consensus        63 ~~~~~v--~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~  116 (119)
                      ...+.+  .. ..+|.+...+.......|+.+.|.|.+.+. |++ .+.|+++|..+.
T Consensus       324 ~~~v~~~~~~-~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  380 (434)
T 1igy_B          324 EKTISKTKGK-PRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPE  380 (434)
T ss_dssp             CCCCCCCCSC-CBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCS
T ss_pred             eEEEeccCCC-CcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecC
Confidence            222222  11 235666554443334457789999999885 433 899999998764

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.64  E-value=9e-16  Score=88.44  Aligned_cols=113  Identities=17%  Similarity=0.314  Sum_probs=72.3

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeCCc--c---C---C-----------C-----------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKDGK--P---V---P-----------D-----------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~~~--~---~---~-----------~-----------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.|+|.|.+.+.  +...+.|||...  .   +   .           .           ....+|.|.+++.+|+|.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~   93 (253)
T 3liz_H           14 PGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKSEDTAM   93 (253)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCGGGCEE
T ss_pred             CCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCChhhCEE
Confidence            48999999999763  356899998321  1   0   0           0           011349999999999999


Q ss_pred             EEEEEEcCC----CCceeEeeEEEe-eecCCCeeeecCCccccCCCCcEEEEeEEcc-CCCC-eEEEEECCE
Q psy12725         49 YQCVIRNEQ----ESAQASGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASG-NPTP-EISWYLDGK  113 (119)
Q Consensus        49 y~C~~~~~~----~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~~~  113 (119)
                      |.|.+.+..    ........+.+. ....+|.+........+..|+.+.|.|.+.+ .|.+ .+.|++++.
T Consensus        94 Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~  165 (253)
T 3liz_H           94 YYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  165 (253)
T ss_dssp             EEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             EEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCe
Confidence            999998752    112223345543 1123555554444445667999999999987 5666 899999886

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.64  E-value=2.2e-15  Score=93.12  Aligned_cols=114  Identities=17%  Similarity=0.286  Sum_probs=78.3

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeC--CccC-------------------CC---------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKD--GKPV-------------------PD---------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~--~~~~-------------------~~---------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.+.|.|.+.+.+  .+.+.|||.  +...                   ..         .....|.|.+++.+|+|.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   93 (457)
T 1hzh_H           14 PGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAV   93 (457)
T ss_dssp             TTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCCCcccCEE
Confidence            489999999998765  678999984  2110                   00         011369999999999999


Q ss_pred             EEEEEEcCCC------------CceeEeeEEEeee-cCCCeeeecCCccccCCCCcEEEEeEEccC-CC-CeEEEEECCE
Q psy12725         49 YQCVIRNEQE------------SAQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGN-PT-PEISWYLDGK  113 (119)
Q Consensus        49 y~C~~~~~~~------------~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~~~  113 (119)
                      |.|.+.+..+            .......+.+... ..+|.+...+....+.+|+.+.|.|.+.+. |. +.+.|++++.
T Consensus        94 Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~  173 (457)
T 1hzh_H           94 YYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL  173 (457)
T ss_dssp             EEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEETTTTB
T ss_pred             EEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEEEeCCE
Confidence            9999988753            1222334444321 124555444434456789999999999877 64 6899999985


Q ss_pred             E
Q psy12725        114 K  114 (119)
Q Consensus       114 ~  114 (119)
                      .
T Consensus       174 ~  174 (457)
T 1hzh_H          174 T  174 (457)
T ss_dssp             C
T ss_pred             e
Confidence            4

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.64  E-value=5.4e-16  Score=90.53  Aligned_cols=107  Identities=13%  Similarity=0.201  Sum_probs=73.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccCCCC--CCCeEEEecCCCCCCeEEEEEEEcCCCCcee-EeeEEEeeecCCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPVPDH--NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA-SGELKLGGRFDPP   75 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~~~~--~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~-~~~~~v~~~~~~~   75 (119)
                      .|+.+.|.|.+. .|.+.+.|++++  ..+...  ....+.    ...|.|.|.|.+.+..+.... ...+.+... .+|
T Consensus       109 ~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~~~~~~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~-~~p  182 (289)
T 3mjg_X          109 EITEITIPCRVT-DPQLVVTLHEKKGDVALPVPYDHQRGFS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQV-SSI  182 (289)
T ss_dssp             SCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCEETTTEEE----ECCCSSEEEEEEEETTEEEECCCEEEEECCC-CCC
T ss_pred             cCCeEEEEeEcC-CCCceEEEEeCCCCCccceeecCCcCee----eeccCcEEEEEEEeCCceeeeeeEEEEecCC-CCC
Confidence            388999999998 577889998864  333211  112222    357899999999876433221 223333321 456


Q ss_pred             eeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCE
Q psy12725         76 VIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK  113 (119)
Q Consensus        76 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~  113 (119)
                      .+...+....+.+|+.+.|.|.+.+.|.+.+.|++++.
T Consensus       183 ~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~  220 (289)
T 3mjg_X          183 NVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRK  220 (289)
T ss_dssp             CCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTS
T ss_pred             CcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCc
Confidence            66665555668899999999999999999999997654

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.63  E-value=1.8e-15  Score=78.52  Aligned_cols=79  Identities=19%  Similarity=0.224  Sum_probs=58.8

Q ss_pred             CCccEEEEEEeccC---CCCeeEEeeCC---------ccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          1 MLALKFFTCKYEGN---PVKTISWMKDG---------KPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         1 ~g~~~~l~c~~~~~---~~~~v~w~~~~---------~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      .|+.++|.|.+.+.   |.|.|.|||+.         ..+...         ....|.|.++...|.|.|.|++.+..+.
T Consensus        21 eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cevsn~~g~  100 (126)
T 2dav_A           21 VGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKF  100 (126)
T ss_dssp             TTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCE
T ss_pred             CCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEEEEEEeCCCc
Confidence            38999999999764   78999999974         111110         1367999999999999999999999877


Q ss_pred             ceeEeeEEEee-ecCCCeeee
Q psy12725         60 AQASGELKLGG-RFDPPVIKE   79 (119)
Q Consensus        60 ~~~~~~~~v~~-~~~~~~~~~   79 (119)
                      ......+.|.+ ....|.+.+
T Consensus       101 ~~~~~~L~V~~~~~~~p~~~i  121 (126)
T 2dav_A          101 DSCSFDLEVHESTGTTPNIDS  121 (126)
T ss_dssp             EEECCEEEEECCCCSCCCCCC
T ss_pred             EEEEEEEEEEecCCCCCeEEe
Confidence            77777777765 323444443

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.63  E-value=5e-15  Score=85.85  Aligned_cols=111  Identities=18%  Similarity=0.252  Sum_probs=73.4

Q ss_pred             CCccEEEEEEeccCC------CCeeEEeeCC--ccCC------------CC---------CCCeEEEecCCCCCCeEEEE
Q psy12725          1 MLALKFFTCKYEGNP------VKTISWMKDG--KPVP------------DH---------NEPVFRIDSVRKEDKGMYQC   51 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~------~~~v~w~~~~--~~~~------------~~---------~~~~l~~~~~~~~d~g~y~C   51 (119)
                      .|+.|+|.|.+.+.+      .+.+.|||..  ..+.            ..         ....|.|.+++.+|.|.|.|
T Consensus        19 ~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C   98 (264)
T 2gjj_A           19 VGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAEDLAVYYC   98 (264)
T ss_dssp             TTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHHHCEEEEE
Confidence            489999999998776      5789999842  2110            00         12379999999999999999


Q ss_pred             EEEcCCCC-ceeEeeEEEeeecC---------------CCeee-ecCCccccCCCCcEEEEeEEccCCC--CeEEEEEC
Q psy12725         52 VIRNEQES-AQASGELKLGGRFD---------------PPVIK-ESFSDETLNPGPNYYFKCIASGNPT--PEISWYLD  111 (119)
Q Consensus        52 ~~~~~~~~-~~~~~~~~v~~~~~---------------~~~~~-~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~  111 (119)
                      .+.+.... ......+.|.....               ++.+. ..+....+.+|+.+.|.|.+.+.+.  +.+.|+++
T Consensus        99 ~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~  177 (264)
T 2gjj_A           99 QQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSFTGYFINWVKK  177 (264)
T ss_dssp             EECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             EEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCccCCeEEEEEEE
Confidence            99876432 11223444432100               11221 1222335789999999999987764  68999986

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.63  E-value=1.1e-15  Score=75.58  Aligned_cols=68  Identities=18%  Similarity=0.271  Sum_probs=54.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccCCCC-------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.|.|.|.+.|++++  ..+...       ....|.|.++..+|.|.|.|.+.|..+.......+.|
T Consensus        16 ~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           16 AGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             TTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcCCCeEEEEEEEEE
Confidence            4889999999999999999999999  766432       2256889999999999999999998875555554443

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.63  E-value=3.3e-15  Score=74.56  Aligned_cols=68  Identities=18%  Similarity=0.192  Sum_probs=55.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC----------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~----------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....          ...|.|.+++.+|.|.|.|.+.|..+.......+.|
T Consensus        19 ~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V   96 (99)
T 1g1c_A           19 QGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV   96 (99)
T ss_dssp             TTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEEEEEEE
Confidence            48999999999999999999999998775432          236899999999999999999998766655555554

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.63  E-value=4.4e-15  Score=87.16  Aligned_cols=111  Identities=19%  Similarity=0.321  Sum_probs=74.1

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--ccC-------------------CCC---------CCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KPV-------------------PDH---------NEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~~-------------------~~~---------~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.|+|.|.+.+.+  .+.+.|||..  ..+                   ...         ....|.|.+++.+|+|.
T Consensus        36 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~  115 (291)
T 2gki_A           36 PGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTSEDSAV  115 (291)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCCGGGCEE
T ss_pred             CCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCCHHHCEE
Confidence            489999999998765  5789999853  111                   000         12369999999999999


Q ss_pred             EEEEEEcCC-CCc----eeEeeEEEeee-------------cCCCeeeecCCccccCCCCcEEEEeEEccCCCC------
Q psy12725         49 YQCVIRNEQ-ESA----QASGELKLGGR-------------FDPPVIKESFSDETLNPGPNYYFKCIASGNPTP------  104 (119)
Q Consensus        49 y~C~~~~~~-~~~----~~~~~~~v~~~-------------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~------  104 (119)
                      |.|.+.+.. +..    .....+.|...             ..++.+...+....+.+|+.+.|.|.+.+.+.+      
T Consensus       116 Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~  195 (291)
T 2gki_A          116 YYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKN  195 (291)
T ss_dssp             EEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCCEETTTTEE
T ss_pred             EEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCccccccccce
Confidence            999999863 111    11223444320             012333333444567899999999999888765      


Q ss_pred             eEEEEEC
Q psy12725        105 EISWYLD  111 (119)
Q Consensus       105 ~~~W~~~  111 (119)
                      .+.|+++
T Consensus       196 ~v~W~k~  202 (291)
T 2gki_A          196 YLAWYQQ  202 (291)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            8999985

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.62  E-value=2.4e-15  Score=90.71  Aligned_cols=92  Identities=18%  Similarity=0.180  Sum_probs=54.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGR   71 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~   71 (119)
                      .|+.+.|.|.+.+ |.+.+.|++++..+...         ....|.|.+++.+|+|.|+|.+.|..+.....+.+.|.. 
T Consensus       260 ~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~-  337 (361)
T 2xot_A          260 LGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYN-  337 (361)
T ss_dssp             TTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEEETTEEEESSCCTTSCEEEEEEEECSSCEEEEEEEEEEES-
T ss_pred             CCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEeecCeEEEeecCcccCEEEEEEEecCCCccEEEEEEEEEe-
Confidence            4899999999998 88999999976543221         135799999999999999999999976555555555421 


Q ss_pred             cCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEE
Q psy12725         72 FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS  107 (119)
Q Consensus        72 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~  107 (119)
                        .           ...|..+.+.|.+.|.|.|.+.
T Consensus       338 --~-----------~~~g~~~~l~C~~~g~P~P~i~  360 (361)
T 2xot_A          338 --F-----------TLHGHHDTLNAAADPWSHPQFE  360 (361)
T ss_dssp             --S-----------CCC-------------------
T ss_pred             --e-----------eccCCceEEEEEeCCCCCCccc
Confidence              1           1567789999999999988764

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=7.1e-15  Score=73.51  Aligned_cols=69  Identities=28%  Similarity=0.594  Sum_probs=57.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC-------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD-------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~-------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+..       .....|.|.+++..|.|.|.|.+.|..+.......+.|.
T Consensus        22 ~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~   97 (100)
T 2edj_A           22 VDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT   97 (100)
T ss_dssp             SSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECSSCCCBCCEEEEEE
T ss_pred             CCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCCCCEEEEEEEEEe
Confidence            488999999999999999999999877652       234679999999999999999999988776666666653

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.62  E-value=2.4e-15  Score=76.22  Aligned_cols=70  Identities=27%  Similarity=0.489  Sum_probs=51.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG   70 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~   70 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...       ....|.|.+++.+|.|.|.|.+.|..+.......+.+..
T Consensus        24 ~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~  100 (108)
T 3kvq_A           24 IGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG  100 (108)
T ss_dssp             TTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEEEEC----CEEEEEEEEEEC
T ss_pred             CCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEEEEEeCCCceEEEEEEEEeC
Confidence            4899999999999898999999998876432       357899999999999999999999887776666666653

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.62  E-value=3.4e-16  Score=96.14  Aligned_cols=114  Identities=20%  Similarity=0.384  Sum_probs=78.2

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--ccC-------------------CC---------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KPV-------------------PD---------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~~-------------------~~---------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.+.|.|.+.+.+  .+.+.|||+.  ..+                   ..         .....|.|.+++.+|+|.
T Consensus        13 ~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   92 (434)
T 1igy_B           13 PGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSLTSDDSAV   92 (434)
T ss_dssp             TBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSBCGGGCSE
T ss_pred             CCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCCChHHCEE
Confidence            489999999998763  6789999863  211                   00         012379999999999999


Q ss_pred             EEEEEEcCCCCceeEeeEEEeee-cCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEE
Q psy12725         49 YQCVIRNEQESAQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKK  114 (119)
Q Consensus        49 y~C~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~  114 (119)
                      |.|.+.+..........+.+... ..+|.+........+.+|+.+.|.|.+.+. |.+ .+.|++++..
T Consensus        93 Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~  161 (434)
T 1igy_B           93 YYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  161 (434)
T ss_dssp             ECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBC
T ss_pred             EEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcC
Confidence            99999885433333444554321 123444433333346789999999999886 666 8999998864

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.62  E-value=1.2e-15  Score=91.21  Aligned_cols=115  Identities=15%  Similarity=0.266  Sum_probs=75.0

Q ss_pred             CCccEEEEEEeccC-CC-CeeEEeeCCccCCC-------CC-C-----CeEEEecCCCCCCeEEEEEEEcCCCCceeEee
Q psy12725          1 MLALKFFTCKYEGN-PV-KTISWMKDGKPVPD-------HN-E-----PVFRIDSVRKEDKGMYQCVIRNEQESAQASGE   65 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~-~~v~w~~~~~~~~~-------~~-~-----~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~   65 (119)
                      .|+.+.|.|.+.+. |. +.+.|++++..+..       .. .     ..|.|..+..+| |.|+|.+.|..+.......
T Consensus       134 ~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~  212 (344)
T 1za6_B          134 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK  212 (344)
T ss_dssp             SSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEE
T ss_pred             CCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEe
Confidence            37899999999886 54 69999999875311       11 1     257777777777 9999999987654322222


Q ss_pred             EEE---------------------eeecCCCeeeecCCccccCCCCcEEEEeEEccC-C-CCeEEEEECCEEcc
Q psy12725         66 LKL---------------------GGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-P-TPEISWYLDGKKLV  116 (119)
Q Consensus        66 ~~v---------------------~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~~~W~~~~~~~~  116 (119)
                      +.+                     .....+|.+...+.......|..+.|.|.+.|. | .+.+.|+++|..+.
T Consensus       213 ~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~  286 (344)
T 1za6_B          213 VEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPEN  286 (344)
T ss_dssp             ECCCCC--------------------CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCC
T ss_pred             ecccccccccccCCCCCCccccccCCCCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECC
Confidence            210                     011235665544333223346669999999885 3 34899999998764

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.62  E-value=2.7e-15  Score=92.37  Aligned_cols=115  Identities=12%  Similarity=0.198  Sum_probs=78.1

Q ss_pred             CCccEEEEEEeccC-CCC-eeEEeeCCccCCC---C----C-----CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeE
Q psy12725          1 MLALKFFTCKYEGN-PVK-TISWMKDGKPVPD---H----N-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL   66 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~-~v~w~~~~~~~~~---~----~-----~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~   66 (119)
                      .|+.+.|.|.+.+. |.+ .+.|++++..+..   .    .     ...|.|..+...| |.|.|.+.|..+.......+
T Consensus       137 ~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i  215 (444)
T 1igt_B          137 TGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKI  215 (444)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEEC
T ss_pred             CCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEe
Confidence            37899999999875 666 9999998765311   0    0     1347777888888 99999999987654333332


Q ss_pred             EEe---------------eecCCCeeeecCCccc--cCCCCcEEEEeEEccCC----CCeEEEEECCEEcc
Q psy12725         67 KLG---------------GRFDPPVIKESFSDET--LNPGPNYYFKCIASGNP----TPEISWYLDGKKLV  116 (119)
Q Consensus        67 ~v~---------------~~~~~~~~~~~~~~~~--~~~g~~~~l~C~~~~~p----~~~~~W~~~~~~~~  116 (119)
                      .+.               ....+|.+...+....  +..|+.+.|.|.+.+.+    .+.+.|++++..+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~  286 (444)
T 1igt_B          216 EPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVH  286 (444)
T ss_dssp             CCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECS
T ss_pred             ccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCcccc
Confidence            210               0012455433333222  58899999999998874    35899999998764

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=4.2e-15  Score=74.22  Aligned_cols=68  Identities=24%  Similarity=0.473  Sum_probs=55.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....      ...|.|.+++.+|.|.|.|.+.|..+.......+.|
T Consensus        25 ~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           25 EGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV   98 (99)
T ss_dssp             TTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEECSSCEEEEECCEEE
T ss_pred             CCCeEEEEEEEeeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEE
Confidence            48899999999999999999999998775432      247999999999999999999998876555555443

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.62  E-value=4.5e-15  Score=74.06  Aligned_cols=68  Identities=24%  Similarity=0.464  Sum_probs=55.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCCC----------CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHNE----------PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~----------~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+.....          ..|.|.+++.+|.|.|.|.+.|..+.......+.|
T Consensus        19 ~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~~l~V   96 (99)
T 1u2h_A           19 EGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV   96 (99)
T ss_dssp             TTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCceeEEEEEEE
Confidence            488999999999999999999999987754211          26999999999999999999998766555555554

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.61  E-value=3.7e-15  Score=92.09  Aligned_cols=115  Identities=17%  Similarity=0.324  Sum_probs=74.2

Q ss_pred             CCccEEEEEEeccCCCC----eeEEeeCCccCCCC--------CCCeEEEe---cCCCCC---CeEEEEEEEcCCCCcee
Q psy12725          1 MLALKFFTCKYEGNPVK----TISWMKDGKPVPDH--------NEPVFRID---SVRKED---KGMYQCVIRNEQESAQA   62 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~----~v~w~~~~~~~~~~--------~~~~l~~~---~~~~~d---~g~y~C~~~~~~~~~~~   62 (119)
                      .|+.+.|.|.+.+.+.+    .+.|++++..+...        ....+.+.   .+...|   .|.|.|.+.+.......
T Consensus       263 ~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~  342 (457)
T 1hzh_H          263 ISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPI  342 (457)
T ss_dssp             TTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCE
T ss_pred             cCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcc
Confidence            38899999999987543    89999999765321        22233332   234555   89999999976544322


Q ss_pred             EeeEEEe-eecCCCeeeecCCcc-ccCCCCcEEEEeEEccCCCC--eEEEEECCEEcc
Q psy12725         63 SGELKLG-GRFDPPVIKESFSDE-TLNPGPNYYFKCIASGNPTP--EISWYLDGKKLV  116 (119)
Q Consensus        63 ~~~~~v~-~~~~~~~~~~~~~~~-~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~  116 (119)
                      ...+.+. ....+|.+...+... .+..|+ +.|.|.+.+.+++  .+.|+++|..+.
T Consensus       343 ~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~  399 (457)
T 1hzh_H          343 EKTISKAKGQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPEN  399 (457)
T ss_dssp             EEEECCCCCCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             eEEEEcccCCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECc
Confidence            2222220 112456666544332 344555 9999999886444  899999999875

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.61  E-value=5.2e-15  Score=73.95  Aligned_cols=68  Identities=25%  Similarity=0.450  Sum_probs=55.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC--------C--CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN--------E--PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~--------~--~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....        .  ..|.|..++..|.|.|.|.+.|..+.......+.|
T Consensus        19 ~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V   96 (100)
T 2kdg_A           19 EGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV   96 (100)
T ss_dssp             TTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEE
Confidence            48899999999998999999999987765432        1  37999999999999999999998776555555554

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.61  E-value=6.7e-15  Score=73.95  Aligned_cols=69  Identities=17%  Similarity=0.316  Sum_probs=56.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....         ...|.|.+++.+|.|.|.|.+.|..+.......+.|.
T Consensus        22 ~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   99 (103)
T 3qp3_A           22 CGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT   99 (103)
T ss_dssp             TTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            48899999999999999999999998775432         2368999999999999999999987766555555553

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.61  E-value=3.4e-15  Score=87.14  Aligned_cols=107  Identities=12%  Similarity=0.208  Sum_probs=70.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC-----CC---CCeEEEecCCCCCCeEEEEEEEcCCCC-ceeEeeEEEeee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD-----HN---EPVFRIDSVRKEDKGMYQCVIRNEQES-AQASGELKLGGR   71 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~-----~~---~~~l~~~~~~~~d~g~y~C~~~~~~~~-~~~~~~~~v~~~   71 (119)
                      .|+.+.|.|.+.+.    +.|++++..+..     ..   ...|.|..++..|.|.|.|.+.+..+. ......+.+.+.
T Consensus        14 ~G~~v~L~C~~~~~----v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~   89 (289)
T 3mjg_X           14 VSSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVP   89 (289)
T ss_dssp             TTCCEEEEEEESSC----CEEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCCEEEEEECC
T ss_pred             CCCcEEEEEeccce----EEEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEE
Confidence            48999999999863    999999877521     11   257999999999999999999987643 222333444332


Q ss_pred             c-CCCeeeecCCc--cccCCCCcEEEEeEEccCCCCeEEEEECC
Q psy12725         72 F-DPPVIKESFSD--ETLNPGPNYYFKCIASGNPTPEISWYLDG  112 (119)
Q Consensus        72 ~-~~~~~~~~~~~--~~~~~g~~~~l~C~~~~~p~~~~~W~~~~  112 (119)
                      . ..+.+...+..  ..+.+|+.+.|.|.+. .|.+.+.|++++
T Consensus        90 ~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~  132 (289)
T 3mjg_X           90 DPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKK  132 (289)
T ss_dssp             CTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESS
T ss_pred             CCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCC
Confidence            1 11221111111  3478999999999987 677788888753

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.61  E-value=8.7e-15  Score=84.92  Aligned_cols=111  Identities=17%  Similarity=0.319  Sum_probs=71.3

Q ss_pred             CCccEEEEEEeccCC-----CCeeEEeeCC--ccC--------------CC-------CCCCeEEEecCCCCCCeEEEEE
Q psy12725          1 MLALKFFTCKYEGNP-----VKTISWMKDG--KPV--------------PD-------HNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~-----~~~v~w~~~~--~~~--------------~~-------~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      .|+.|+|.|.+.+.+     .+.+.|||..  ..+              ..       .....|.|.+++.+|+|.|.|.
T Consensus        29 ~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~  108 (268)
T 1x9q_A           29 LGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAEDLGVYFCS  108 (268)
T ss_dssp             TTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhHCEEEEEE
Confidence            489999999998776     4789999853  211              00       0123699999999999999999


Q ss_pred             EEcCCCC-ceeEeeEEEeeecC------CCe--------------eeecCCccccCCCCcEEEEeEEccCCC--CeEEEE
Q psy12725         53 IRNEQES-AQASGELKLGGRFD------PPV--------------IKESFSDETLNPGPNYYFKCIASGNPT--PEISWY  109 (119)
Q Consensus        53 ~~~~~~~-~~~~~~~~v~~~~~------~~~--------------~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~  109 (119)
                      +.+.... ......+.|.....      +|.              ....+....+.+|+.+.|.|.+.+.+.  +.+.|+
T Consensus       109 ~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~  188 (268)
T 1x9q_A          109 QSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGFTFGHYWMNWV  188 (268)
T ss_dssp             ECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESSCGGGCEEEEE
T ss_pred             EecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCccccccEEEEE
Confidence            9886432 11223333332110      110              112233456789999999999987753  689999


Q ss_pred             EC
Q psy12725        110 LD  111 (119)
Q Consensus       110 ~~  111 (119)
                      ++
T Consensus       189 k~  190 (268)
T 1x9q_A          189 RQ  190 (268)
T ss_dssp             EE
T ss_pred             Ee
Confidence            74

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.61  E-value=6.1e-15  Score=87.50  Aligned_cols=108  Identities=19%  Similarity=0.375  Sum_probs=73.8

Q ss_pred             CCccEEEEEEeccC----CCCeeEEeeCCcc---------------C--C----------CCCCCeEEEecCCCCCCeEE
Q psy12725          1 MLALKFFTCKYEGN----PVKTISWMKDGKP---------------V--P----------DHNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         1 ~g~~~~l~c~~~~~----~~~~v~w~~~~~~---------------~--~----------~~~~~~l~~~~~~~~d~g~y   49 (119)
                      .|+.+.|.|.+.+.    +.+.+.|++++..               .  .          ......|.|.+++..|.|.|
T Consensus        28 ~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y  107 (331)
T 3u83_A           28 IGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVY  107 (331)
T ss_dssp             TTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEEECSCCGGGCEEE
T ss_pred             ecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEEEcccCcccCcEE
Confidence            48999999998875    4457999995410               0  0          11346799999999999999


Q ss_pred             EEEE-EcCCCCceeEeeEEEeeecCCCeeee--cCCccccCCC---CcEEEEeE-EccCCCCeEEEEEC
Q psy12725         50 QCVI-RNEQESAQASGELKLGGRFDPPVIKE--SFSDETLNPG---PNYYFKCI-ASGNPTPEISWYLD  111 (119)
Q Consensus        50 ~C~~-~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~g---~~~~l~C~-~~~~p~~~~~W~~~  111 (119)
                      .|.+ .+..+.......+.+.   .+|.+..  .+....+.+|   +.+.|.|. ..+.|.+.+.|+++
T Consensus       108 ~C~~~~~~~~~~~~~~~l~V~---~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~  173 (331)
T 3u83_A          108 ICEFATFPTGNRESQLNLTVM---AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETR  173 (331)
T ss_dssp             EEEEEEETTEEEEEEEEEEEE---BCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEES
T ss_pred             EEEEEecCCCccEEEEEEEEe---cCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcC
Confidence            9985 4444333334444443   2444432  3334456677   77999997 78889999999984

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.60  E-value=5.2e-15  Score=76.72  Aligned_cols=67  Identities=16%  Similarity=0.320  Sum_probs=54.3

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCCC----------------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEee
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDHN----------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE   65 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~----------------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~   65 (119)
                      +..+.|.|.+.|.|.|.|+|+|||..+....                ...|.|..+...|.|.|+|.+.|..+.......
T Consensus        15 ~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~~   94 (126)
T 1he7_A           15 MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIM   94 (126)
T ss_dssp             CCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEEE
Confidence            4578899999999999999999998875421                146899999999999999999999876655554


Q ss_pred             EEE
Q psy12725         66 LKL   68 (119)
Q Consensus        66 ~~v   68 (119)
                      +.+
T Consensus        95 l~v   97 (126)
T 1he7_A           95 AAF   97 (126)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            444

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.60  E-value=2.7e-15  Score=86.02  Aligned_cols=116  Identities=16%  Similarity=0.260  Sum_probs=73.6

Q ss_pred             CCccEEEEEEeccCC----CCeeEEeeCCccCCCC---------CC-----CeEEEecCCCCCCeEEEEEEEcCCCCcee
Q psy12725          1 MLALKFFTCKYEGNP----VKTISWMKDGKPVPDH---------NE-----PVFRIDSVRKEDKGMYQCVIRNEQESAQA   62 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~----~~~v~w~~~~~~~~~~---------~~-----~~l~~~~~~~~d~g~y~C~~~~~~~~~~~   62 (119)
                      +|+.+.|.|.+.+..    ...|+|++++..+...         ..     +.|.|......|.+.|.|.+.+.......
T Consensus        38 ~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~  117 (240)
T 4acp_A           38 ISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPI  117 (240)
T ss_dssp             SSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CE
T ss_pred             cCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccc
Confidence            388999999998863    3379999999875321         11     13444333445688999999997643222


Q ss_pred             EeeEEE-eeecCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEEcc
Q psy12725         63 SGELKL-GGRFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLV  116 (119)
Q Consensus        63 ~~~~~v-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~  116 (119)
                      ...+.+ .....+|.+...+.......|+.+.|.|.+.+. |.+ .+.|+++|..+.
T Consensus       118 ~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~  174 (240)
T 4acp_A          118 EKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPEN  174 (240)
T ss_dssp             EEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             cccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECC
Confidence            222221 111246666665544333358899999999885 544 799999998764

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.60  E-value=9.7e-15  Score=75.02  Aligned_cols=69  Identities=19%  Similarity=0.285  Sum_probs=55.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC--------C---CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN--------E---PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~--------~---~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....        .   ..|.|.+++..|.|.|.|.+.|..+.......+.|.
T Consensus        29 ~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  108 (116)
T 2kkq_A           29 EGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT  108 (116)
T ss_dssp             TTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEe
Confidence            48899999999999999999999988765321        1   179999999999999999999987766555555554

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.60  E-value=1.7e-14  Score=71.80  Aligned_cols=68  Identities=18%  Similarity=0.379  Sum_probs=55.5

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.+. |.+.+.|++++..+....         ...|.|.+++..|.|.|.|.+.|..+.......+.|
T Consensus        15 ~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V   92 (97)
T 2bk8_A           15 EGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV   92 (97)
T ss_dssp             TTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeEEEEEEE
Confidence            48999999999997 889999999988765321         137899999999999999999998876665555555

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.60  E-value=4.3e-16  Score=87.78  Aligned_cols=114  Identities=16%  Similarity=0.216  Sum_probs=73.1

Q ss_pred             CccEEEEEEeccCCC---CeeEEeeCCccCCC--------C-CC-----CeEEEecCCCCCCeEEEEEEEcCCCCceeEe
Q psy12725          2 LALKFFTCKYEGNPV---KTISWMKDGKPVPD--------H-NE-----PVFRIDSVRKEDKGMYQCVIRNEQESAQASG   64 (119)
Q Consensus         2 g~~~~l~c~~~~~~~---~~v~w~~~~~~~~~--------~-~~-----~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~   64 (119)
                      |+.++|.|.+.+.+.   +.|.| ++ .....        . ..     ..|.|..+...|.|.|.|.+.+.........
T Consensus        19 G~~v~L~C~~~g~~p~~~~~v~W-~~-~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~   96 (214)
T 1ow0_A           19 GSEANLTCTLTGLRDASGVTFTW-TP-SSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTA   96 (214)
T ss_dssp             CSSCCCEEEETTCCSCCCCCCCB-SS-CSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCSSCSSCEEE
T ss_pred             CCCcEEEEEEeeeECCCCeEEEE-cC-CCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEEEecCCCCCceeE
Confidence            889999999988743   68999 43 32211        0 01     1344455556789999999998764322222


Q ss_pred             eEEEeeecCCCeeeecCC-ccccCCCCcEEEEeEEccC-CC-CeEEEEECCEEccc
Q psy12725         65 ELKLGGRFDPPVIKESFS-DETLNPGPNYYFKCIASGN-PT-PEISWYLDGKKLVN  117 (119)
Q Consensus        65 ~~~v~~~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~~  117 (119)
                      .+.+.....+|.+...+. ...+..|+.+.|.|.+.+. |. +.+.|++||..+..
T Consensus        97 ~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~  152 (214)
T 1ow0_A           97 TLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPR  152 (214)
T ss_dssp             EEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCG
T ss_pred             eeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCC
Confidence            222111124666654433 2346788899999999886 43 48999999988754

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.60  E-value=2.9e-14  Score=80.16  Aligned_cols=108  Identities=21%  Similarity=0.306  Sum_probs=75.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC-----------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~-----------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....           ...|.|.++...|.|.|.|.+.|..+.......+.+.
T Consensus        32 ~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  111 (215)
T 3mtr_A           32 EGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQA  111 (215)
T ss_dssp             TTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCceEEEEEEEEC
Confidence            48999999999999999999999998875432           3578999999999999999999998766655555554


Q ss_pred             eecCCCeeeecCCccccCCCCcEEEEeEEc----cCCCC--eEEEEECCE
Q psy12725         70 GRFDPPVIKESFSDETLNPGPNYYFKCIAS----GNPTP--EISWYLDGK  113 (119)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~----~~p~~--~~~W~~~~~  113 (119)
                      ....+|.....     ...+..+.+.|...    +.|..  .+.|.+++.
T Consensus       112 ~~P~~p~~~~~-----~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~  156 (215)
T 3mtr_A          112 DTPSSPSIDQV-----EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGE  156 (215)
T ss_dssp             CCCCCCEEEEE-----EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTC
T ss_pred             CCCCCCcceEE-----EEecceEEEEEecCCccCCCceEEEEEEEEECCC
Confidence            32222322211     12345677777632    22322  477887654

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.60  E-value=6e-16  Score=91.85  Aligned_cols=110  Identities=14%  Similarity=0.210  Sum_probs=70.2

Q ss_pred             ccEEEEEEeccC-C-CCeeEEeeCCccCCCCC--------C------CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeE
Q psy12725          3 ALKFFTCKYEGN-P-VKTISWMKDGKPVPDHN--------E------PVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL   66 (119)
Q Consensus         3 ~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~~--------~------~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~   66 (119)
                      +.+.|.|.+.+. | .+.|.|+|++..+....        .      ..|.+......|.|.|.|.+.+..+.....+.+
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~  104 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKK  104 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEECC
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeeec
Confidence            689999999875 4 46899999998764211        1      124455555568999999999875432222211


Q ss_pred             EEeeecCCCee-eecCCccccCCCCcEEEEeEEccC-CCC---eEEEEECC
Q psy12725         67 KLGGRFDPPVI-KESFSDETLNPGPNYYFKCIASGN-PTP---EISWYLDG  112 (119)
Q Consensus        67 ~v~~~~~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~-p~~---~~~W~~~~  112 (119)
                      .+......|.+ ...+....+..|+.+.|.|.+.+. |.+   .+.|++++
T Consensus       105 ~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~  155 (323)
T 2wqr_A          105 CADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRAS  155 (323)
T ss_dssp             CCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETT
T ss_pred             CCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECC
Confidence            01111112333 222333346789999999998875 455   89999964

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.59  E-value=1.1e-14  Score=72.62  Aligned_cols=68  Identities=28%  Similarity=0.520  Sum_probs=55.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....         ...|.|.+++.+|.|.|.|.+.|..+.......+.|
T Consensus        20 ~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V   96 (99)
T 3puc_A           20 SDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI   96 (99)
T ss_dssp             SSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEE
Confidence            48899999999998999999999998775432         126899999999999999999998766555555554

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=1.8e-14  Score=74.19  Aligned_cols=69  Identities=19%  Similarity=0.393  Sum_probs=56.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC--------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...        ....|.|.+++..|.|.|.|.+.|..+.......+.+.
T Consensus        38 ~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  114 (118)
T 2e7c_A           38 VGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV  114 (118)
T ss_dssp             SSSCEEEEEEEEEESCCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEEEEEE
T ss_pred             CCCEEEEEEEEccCCCCEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEEEEE
Confidence            4899999999999999999999999877521        12359999999999999999999998765555555553

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=2e-15  Score=76.73  Aligned_cols=70  Identities=31%  Similarity=0.511  Sum_probs=57.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC----------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG   70 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~----------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~   70 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....          ...|.|.+++.+|.|.|.|.+.|..+.......+.|..
T Consensus        23 ~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~  102 (110)
T 2dm3_A           23 EGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAA  102 (110)
T ss_dssp             SSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSCEEEECCEEEEEC
T ss_pred             CCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEEEEEEEeC
Confidence            48899999999999999999999988765321          24799999999999999999999887665556666543

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.59  E-value=5.7e-16  Score=90.92  Aligned_cols=117  Identities=15%  Similarity=0.183  Sum_probs=43.1

Q ss_pred             CCccEEEEEEeccC-CCC--eeEEeeCCccCCCCC------CCeEEEecCCCCCCeEEEEEEEcCCCCc------eeEee
Q psy12725          1 MLALKFFTCKYEGN-PVK--TISWMKDGKPVPDHN------EPVFRIDSVRKEDKGMYQCVIRNEQESA------QASGE   65 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~--~v~w~~~~~~~~~~~------~~~l~~~~~~~~d~g~y~C~~~~~~~~~------~~~~~   65 (119)
                      +|+.++|.|.+.+. |..  .|+|||+++.+....      ...+.+...+..+.+.|.|.+.+.....      ..+..
T Consensus       100 ~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~  179 (291)
T 1mq8_A          100 VGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAP  179 (291)
T ss_dssp             SSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCC
T ss_pred             CCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccc
Confidence            48999999999875 433  589999997664211      1234444344455569999999764321      12233


Q ss_pred             EEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCC---eEEEEECCEEccc
Q psy12725         66 LKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP---EISWYLDGKKLVN  117 (119)
Q Consensus        66 ~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~~~~~~~  117 (119)
                      ..+.+.+.|+..........+.+|+.++|.|.+.+.+++   .++|+++|+.+..
T Consensus       180 ~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~  234 (291)
T 1mq8_A          180 YQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP  234 (291)
T ss_dssp             EECBC--------------------------------------------------
T ss_pred             eEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCc
Confidence            444443333321111112357899999999999987554   5999999988763

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.59  E-value=2.2e-13  Score=78.53  Aligned_cols=115  Identities=16%  Similarity=0.257  Sum_probs=80.3

Q ss_pred             CCccEEEEEEeccC-C---CCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCe
Q psy12725          1 MLALKFFTCKYEGN-P---VKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPV   76 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~---~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~   76 (119)
                      .|+.++|.|.+.+. |   ...|.|+|++..+.. ....+.+..+...+.|.|.|.+.+..+....+..+.+... ..+.
T Consensus        16 ~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG-aT~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~VtVT~~-a~l~   93 (304)
T 3shs_A           16 AGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN-NTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEE-AELI   93 (304)
T ss_dssp             TTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC-CSSEEEESSCCGGGCEEEEEEEEETTTCCEEECCCEEECB-CCEE
T ss_pred             CCCCEEEEEEecCCCCCCCCceEEEEECCccccC-CcceEEeeeccccCCeEEEEEEEECCCCeeeeeeEEEecc-Ccee
Confidence            38999999998653 5   347999999988754 4558888899999999999999987665544444444331 2223


Q ss_pred             eeec-CCccccCCCCcEEEEeEE--c-cCC-----CCeEEEEECCEEccc
Q psy12725         77 IKES-FSDETLNPGPNYYFKCIA--S-GNP-----TPEISWYLDGKKLVN  117 (119)
Q Consensus        77 ~~~~-~~~~~~~~g~~~~l~C~~--~-~~p-----~~~~~W~~~~~~~~~  117 (119)
                      +... +....+..+..+.|.+.+  . |.+     ...++|++++..+..
T Consensus        94 i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg  143 (304)
T 3shs_A           94 VNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT  143 (304)
T ss_dssp             EEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES
T ss_pred             EEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC
Confidence            3222 222334567888888876  4 344     358999999988754

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.59  E-value=1.6e-14  Score=72.73  Aligned_cols=67  Identities=15%  Similarity=0.289  Sum_probs=54.7

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCCCC----------Ce----EEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDHNE----------PV----FRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~----------~~----l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      |+.+.|.|.+.|.|.|.+.|++++..+.....          ..    |.|.+++.+|.|.|+|.+.|..+.......+.
T Consensus        16 ~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   95 (103)
T 1wwb_X           16 DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH   95 (103)
T ss_dssp             CCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEC
T ss_pred             CcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEE
Confidence            56788999999999999999999987754321          22    99999999999999999999987766555555


Q ss_pred             E
Q psy12725         68 L   68 (119)
Q Consensus        68 v   68 (119)
                      +
T Consensus        96 V   96 (103)
T 1wwb_X           96 F   96 (103)
T ss_dssp             C
T ss_pred             E
Confidence            4

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.59  E-value=5.6e-15  Score=73.85  Aligned_cols=67  Identities=33%  Similarity=0.561  Sum_probs=54.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC----------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...          ....|.|..++..|.|.|.|.+.|..+.......+.
T Consensus        22 ~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~   98 (100)
T 3caf_A           22 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD   98 (100)
T ss_dssp             TTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEEEEE
Confidence            3899999999999899999999998776432          124799999999999999999999876554444444

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.58  E-value=1.6e-14  Score=71.64  Aligned_cols=66  Identities=18%  Similarity=0.403  Sum_probs=53.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      .|+.+.|.|.+.+.| +.+.|++++..+...     ....|.|.+++.+|.|.|.|.+.|..+.......+.
T Consensus        23 ~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~   93 (95)
T 2ckn_A           23 PGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVN   93 (95)
T ss_dssp             TTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCCcEEEEEEEE
Confidence            489999999999887 799999998877532     246799999999999999999999876554444444

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.58  E-value=8e-14  Score=86.59  Aligned_cols=112  Identities=18%  Similarity=0.335  Sum_probs=75.1

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--ccC-------------------CC---------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KPV-------------------PD---------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~~-------------------~~---------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.++|.|.+.+.+  ...+.|||..  ..+                   ..         .....|.|.+++.+|+|.
T Consensus        15 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~   94 (475)
T 1iga_A           15 PGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPEDTAV   94 (475)
T ss_pred             CCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECCCChhhCEE
Confidence            489999999998654  5689999842  111                   00         012479999999999999


Q ss_pred             EEEEEEcCCCC------ceeEeeEEEeee-cCCCeeeecCCccccCCCCcEEEEeEEccC-CC-C-eEEEEECCE
Q psy12725         49 YQCVIRNEQES------AQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGN-PT-P-EISWYLDGK  113 (119)
Q Consensus        49 y~C~~~~~~~~------~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~-~~~W~~~~~  113 (119)
                      |.|.+.+..+.      ......+.|... ..+|.+...... ...+|+.+.|.|.+.+. |. + .+.|++++.
T Consensus        95 Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~  168 (475)
T 1iga_A           95 YYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLC-STQPDGNVVIACLVQGFFPQEPLSVTWSESGQ  168 (475)
T ss_pred             EEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCcc-ccCCCCeEEEEEEEeeecCCCceEEEEcCCCc
Confidence            99999986531      112334444321 124444433222 23689999999999887 55 5 899999875

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.57  E-value=1.3e-14  Score=82.62  Aligned_cols=116  Identities=17%  Similarity=0.217  Sum_probs=73.7

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeCC--ccCC----------------CC-----------CCCeEEEecCCCCCCeEE
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKDG--KPVP----------------DH-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~~--~~~~----------------~~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      .|+.|+|.|.+.+.  +...+.|||..  ..+.                ..           ....|.|.+++.+|+|.|
T Consensus        15 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y   94 (230)
T 1ypz_F           15 RDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIY   94 (230)
T ss_dssp             TTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGCSEE
T ss_pred             CCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCChhhCEEE
Confidence            48999999999764  45689999842  1110                00           123799999999999999


Q ss_pred             EEEEEcC--CCC--ceeEeeEEEeeec------CCCeeeec-CCccccCCCCcEEEEeEEccC-CC-CeEEEEE-CCEEc
Q psy12725         50 QCVIRNE--QES--AQASGELKLGGRF------DPPVIKES-FSDETLNPGPNYYFKCIASGN-PT-PEISWYL-DGKKL  115 (119)
Q Consensus        50 ~C~~~~~--~~~--~~~~~~~~v~~~~------~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~-~~~~~  115 (119)
                      .|.+.+.  ...  ......+.|....      .+|..... +....+..|+.+.|.|.+.+. |. +.+.|++ +|..+
T Consensus        95 ~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l  174 (230)
T 1ypz_F           95 YCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIRVYWKEKDGNTI  174 (230)
T ss_dssp             EEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCEEEEECTTSSCB
T ss_pred             EEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeEEEEEccCCeEc
Confidence            9999874  111  1122344443100      12332222 222334568899999999876 65 4899999 87655


Q ss_pred             c
Q psy12725        116 V  116 (119)
Q Consensus       116 ~  116 (119)
                      .
T Consensus       175 ~  175 (230)
T 1ypz_F          175 L  175 (230)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.57  E-value=5.1e-15  Score=74.91  Aligned_cols=68  Identities=28%  Similarity=0.582  Sum_probs=56.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....         ...|.|.+++..|.|.|.|.+.|..+.......+.|
T Consensus        28 ~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V  104 (106)
T 1nct_A           28 EGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI  104 (106)
T ss_dssp             SSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEEEEE
T ss_pred             CCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEEEEE
Confidence            48999999999999999999999988765322         357899999999999999999998877665655554

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.57  E-value=2.7e-14  Score=76.74  Aligned_cols=69  Identities=29%  Similarity=0.490  Sum_probs=56.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC----------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~----------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....          ...|.|.+++..|.|.|.|.+.|..+.......+.|.
T Consensus        55 ~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  133 (154)
T 1fhg_A           55 EGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE  133 (154)
T ss_dssp             TTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEEEEEEe
Confidence            48899999999999999999999998765421          2379999999999999999999987766555556554

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.56  E-value=1.4e-13  Score=86.38  Aligned_cols=112  Identities=15%  Similarity=0.167  Sum_probs=76.3

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC---------CC------CeEEEecCCCCCCeEEEEEEEcCCCCceeEe
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQESAQASG   64 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~---------~~------~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~   64 (119)
                      |+.++|.|.+.+. | ...|+|++++..+...         ..      +.|.|......|.|.|.|.+.|...... ..
T Consensus       312 g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~  390 (512)
T 1zvo_C          312 RDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RL  390 (512)
T ss_pred             CCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ce
Confidence            8899999999886 3 3489999998765410         11      2377777778899999999999765432 22


Q ss_pred             eEEEee-e--cCCCeeeecCCccccCCCCcEE-EEeEEccCCCC--eEEEEECCEEccc
Q psy12725         65 ELKLGG-R--FDPPVIKESFSDETLNPGPNYY-FKCIASGNPTP--EISWYLDGKKLVN  117 (119)
Q Consensus        65 ~~~v~~-~--~~~~~~~~~~~~~~~~~g~~~~-l~C~~~~~p~~--~~~W~~~~~~~~~  117 (119)
                      .+.... .  ..+|.+...+...   .|+.+. |.|.+.|.+++  .+.|++||..+..
T Consensus       391 ~~~~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~  446 (512)
T 1zvo_C          391 MALREPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNT  446 (512)
T ss_pred             eEEeecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcC
Confidence            222111 0  1345555443322   788899 99999986544  5899999998754

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.56  E-value=2.4e-14  Score=69.54  Aligned_cols=63  Identities=21%  Similarity=0.368  Sum_probs=49.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.+ |.+.|.|+|++..+...         ....|.|.+++.+|.|.|.|.+.+.    .....+.|
T Consensus        10 ~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~----~~~a~l~V   81 (84)
T 2lu7_A           10 PGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQD----SRIFLVSV   81 (84)
T ss_dssp             TTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTTT----CEEEEEEE
T ss_pred             cCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECCE----EEEEEEEE
Confidence            4899999999966 88899999999887543         2346999999999999999987553    33444554

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=2.4e-14  Score=71.53  Aligned_cols=66  Identities=20%  Similarity=0.438  Sum_probs=52.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC-----CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~-----~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      .|+.+.|.|.+.+.| +.+.|+|++..+....     ...|.|..++..|.|.|.|.+.|..+.......+.
T Consensus        17 ~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   87 (99)
T 2cr3_A           17 PGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVN   87 (99)
T ss_dssp             TTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEECSSEEEETTCCTTTCEEEEEEEEETTEEEEEEEEEC
T ss_pred             CCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEECCEEEEccCCHHHCEEEEEEEEeCCceEEEEEEEE
Confidence            489999999998876 7999999998774432     45799999999999999999999866543333333

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.56  E-value=2.3e-14  Score=81.95  Aligned_cols=114  Identities=17%  Similarity=0.299  Sum_probs=72.1

Q ss_pred             CCccEEEEEEeccCC----CCeeEEeeCC--cc---C---C------C---------------------CCCCeEEEecC
Q psy12725          1 MLALKFFTCKYEGNP----VKTISWMKDG--KP---V---P------D---------------------HNEPVFRIDSV   41 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~----~~~v~w~~~~--~~---~---~------~---------------------~~~~~l~~~~~   41 (119)
                      .|+.|+|.|.+.+.+    ...+.||+..  ..   +   .      .                     .....|.|.++
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   93 (239)
T 3tv3_H           14 ASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFLKLNSV   93 (239)
T ss_dssp             TTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEEEECSC
T ss_pred             CCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEEEECCC
Confidence            489999999997654    3489999832  11   0   0      0                     01234999999


Q ss_pred             CCCCCeEEEEEEEcCCC-------------CceeEeeEEEee-ecCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-e
Q psy12725         42 RKEDKGMYQCVIRNEQE-------------SAQASGELKLGG-RFDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-E  105 (119)
Q Consensus        42 ~~~d~g~y~C~~~~~~~-------------~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~  105 (119)
                      +.+|+|.|.|.+.+..+             .......+.+.. ...+|.+...+....+..|+.+.|.|.+.+. |.+ .
T Consensus        94 ~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~  173 (239)
T 3tv3_H           94 TAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT  173 (239)
T ss_dssp             CGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEEEEBSSCCE
T ss_pred             ChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEeeEeCCCeE
Confidence            99999999999876421             011122344431 1234555544444455679999999999874 444 4


Q ss_pred             EEEEECCEE
Q psy12725        106 ISWYLDGKK  114 (119)
Q Consensus       106 ~~W~~~~~~  114 (119)
                      +.|++++..
T Consensus       174 v~W~~~g~~  182 (239)
T 3tv3_H          174 VSWNSGALT  182 (239)
T ss_dssp             EEEGGGTBC
T ss_pred             EEEEECCcc
Confidence            889998853

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.56  E-value=2.4e-14  Score=72.64  Aligned_cols=68  Identities=13%  Similarity=0.206  Sum_probs=52.4

Q ss_pred             CCccEEEEEEeccCCC---CeeEEeeCCccCCC------------------CCCCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          1 MLALKFFTCKYEGNPV---KTISWMKDGKPVPD------------------HNEPVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~---~~v~w~~~~~~~~~------------------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      .|+.++|.|.+.+.|.   +.|.|||++.....                  .....|.|.+++..|.|.|.|.+.|..+.
T Consensus        18 ~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   97 (108)
T 3cx2_A           18 VGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKF   97 (108)
T ss_dssp             TTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             CCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEEEEEEecCCCc
Confidence            4899999999999887   89999997621100                  01357999999999999999999999877


Q ss_pred             ceeEeeEEE
Q psy12725         60 AQASGELKL   68 (119)
Q Consensus        60 ~~~~~~~~v   68 (119)
                      ......+.|
T Consensus        98 ~~~~~~L~V  106 (108)
T 3cx2_A           98 DCSNFNLTV  106 (108)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEEE
Confidence            666666655

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.56  E-value=6.5e-14  Score=69.75  Aligned_cols=68  Identities=22%  Similarity=0.306  Sum_probs=53.5

Q ss_pred             CCccEEEEEEec-cCCCCeeEEeeCCccCCCC----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYE-GNPVKTISWMKDGKPVPDH----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~-~~~~~~v~w~~~~~~~~~~----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+. +.|.+.+.|+|++......    ....|.|.+++.+|.|.|.|.+.|..+.......+.+
T Consensus        24 ~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V   96 (98)
T 1gl4_B           24 PGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV   96 (98)
T ss_dssp             TTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             cCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCceeecCCCEEEEeCCChhhCEEEEEEecCCCCccccEEEEEE
Confidence            489999999998 6788999999975433221    2568999999999999999999998776555555544

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.55  E-value=7.2e-14  Score=81.62  Aligned_cols=109  Identities=14%  Similarity=0.220  Sum_probs=71.8

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeCC--ccCC----------------------------CCCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKDG--KPVP----------------------------DHNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~~--~~~~----------------------------~~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.|+|.|.+.+.  +.+.+.|||..  ....                            ......|.|.+++.+|+|.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~   93 (280)
T 3fku_X           14 PGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRSEDTAV   93 (280)
T ss_dssp             TTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSCCSTTCEE
T ss_pred             CCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCCChhhCEE
Confidence            48999999999775  55789999732  1110                            0011369999999999999


Q ss_pred             EEEEEEcCC---------CCceeEeeEEEee-e-----------cCCCeeeecCCccccCCCCcEEEEeEEcc-CC-CCe
Q psy12725         49 YQCVIRNEQ---------ESAQASGELKLGG-R-----------FDPPVIKESFSDETLNPGPNYYFKCIASG-NP-TPE  105 (119)
Q Consensus        49 y~C~~~~~~---------~~~~~~~~~~v~~-~-----------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~~  105 (119)
                      |.|.+.+..         ........+.+.. .           ..++.+...+. ..+.+|+.++|.|.+.+ .+ .+.
T Consensus        94 Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~~~~~~~~  172 (280)
T 3fku_X           94 YYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNSNNVGNQG  172 (280)
T ss_dssp             CCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECCCCCCCTTC
T ss_pred             EEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEecCCCCCCce
Confidence            999998761         1111223344432 0           01333443333 66889999999999887 43 368


Q ss_pred             EEEEE
Q psy12725        106 ISWYL  110 (119)
Q Consensus       106 ~~W~~  110 (119)
                      +.|++
T Consensus       173 v~W~r  177 (280)
T 3fku_X          173 AAWLQ  177 (280)
T ss_dssp             CEEEE
T ss_pred             EEEEE
Confidence            99987

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.55  E-value=3.5e-15  Score=87.09  Aligned_cols=107  Identities=16%  Similarity=0.280  Sum_probs=74.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCC----CCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVP----DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPV   76 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~----~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~   76 (119)
                      .|+.+.|.|.+.+.    +.|++++....    ......|.|.+++..|.|.|.|.+.+..+.......+.+..   +|.
T Consensus        18 ~G~~v~L~C~~~~~----v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~---~~~   90 (292)
T 4dkd_C           18 PGATVTLRCVGNGS----VEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKD---PAR   90 (292)
T ss_dssp             TTCCEEEEEECSSC----CCBCCCCCSSCEECCBTTEEEEEESSCCGGGCSCEEECCCC----CCEEECCEECC---SSC
T ss_pred             CCCcEEEEEcCCCc----eEEccCCCCceEEeccCceEEEEEcccccccCEEEEEEEccCCCCcceEEEEEEcC---ccc
Confidence            48999999999873    89997654321    11235899999999999999999988765554555555532   332


Q ss_pred             -eeecCCccccCCCCcEEEEeEEccCCC--CeEEEEEC-CEEc
Q psy12725         77 -IKESFSDETLNPGPNYYFKCIASGNPT--PEISWYLD-GKKL  115 (119)
Q Consensus        77 -~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~-~~~~  115 (119)
                       +...+....+.+|+.+.|.|.+.+ |.  +.+.|+++ +..+
T Consensus        91 ~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~  132 (292)
T 4dkd_C           91 PWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPL  132 (292)
T ss_dssp             CEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCC
T ss_pred             cccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCcc
Confidence             344445556789999999999987 44  68999986 4443

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.53  E-value=4.6e-14  Score=80.28  Aligned_cols=113  Identities=13%  Similarity=0.260  Sum_probs=67.9

Q ss_pred             CCccEEEEEEeccC--CCCee--EEeeCC--cc---C-------C-------C-------------CCCCeEEEecCCCC
Q psy12725          1 MLALKFFTCKYEGN--PVKTI--SWMKDG--KP---V-------P-------D-------------HNEPVFRIDSVRKE   44 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v--~w~~~~--~~---~-------~-------~-------------~~~~~l~~~~~~~~   44 (119)
                      +|+.|+|.|.+.+.  ....+  .|||..  ..   +       .       .             .....|.|.+++.+
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   93 (232)
T 3qhz_H           14 PTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMTNMDPV   93 (232)
T ss_dssp             TTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEECcCChh
Confidence            48999999999753  22445  999732  10   0       0       0             01135999999999


Q ss_pred             CCeEEEEEEEcCC--------CCceeEeeEEEee-ecCCCeeeecCCccccCCCCcEEEEeEEccCCCC--eEEEEECCE
Q psy12725         45 DKGMYQCVIRNEQ--------ESAQASGELKLGG-RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP--EISWYLDGK  113 (119)
Q Consensus        45 d~g~y~C~~~~~~--------~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~  113 (119)
                      |+|.|.|.+.+..        ........+.+.. ...+|.+........+..|+.+.|.|.+.+.+++  .+.|++++.
T Consensus        94 DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~~~g~  173 (232)
T 3qhz_H           94 DTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL  173 (232)
T ss_dssp             GCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             hCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEEEEECCE
Confidence            9999999998652        1122223444431 1235555533334455679999999999875433  578999885

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.53  E-value=1.5e-14  Score=74.75  Aligned_cols=77  Identities=14%  Similarity=0.261  Sum_probs=55.9

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeCCccCCC-----C------------CCCeEEEecCCCCCCeEEEEEEEcCCCCce
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKDGKPVPD-----H------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ   61 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~~~~~~~-----~------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~   61 (119)
                      .|+.+.|.|.+.+.  +.+.+.|++++..+..     .            ....|.|.+++.+|+|.|+|.+.|..+...
T Consensus        22 ~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~  101 (122)
T 3s35_X           22 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK  101 (122)
T ss_dssp             ETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             cCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccCCCceE
Confidence            38999999999884  4568999998874321     0            124699999999999999999999887766


Q ss_pred             eEeeEEEeeecCCCeeeec
Q psy12725         62 ASGELKLGGRFDPPVIKES   80 (119)
Q Consensus        62 ~~~~~~v~~~~~~~~~~~~   80 (119)
                      ....+.|..   +|.+...
T Consensus       102 ~~~~l~V~~---~p~i~~~  117 (122)
T 3s35_X          102 NSTFVRVHE---KPFVAFG  117 (122)
T ss_dssp             EEEEEEEEE---EECC---
T ss_pred             EEEEEEEec---cCeEEee
Confidence            666666643   4554443

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.6e-14  Score=74.13  Aligned_cols=69  Identities=16%  Similarity=0.211  Sum_probs=53.9

Q ss_pred             CCccEEEEEEeccC---CCCeeEEeeCCc---------cCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          1 MLALKFFTCKYEGN---PVKTISWMKDGK---------PVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         1 ~g~~~~l~c~~~~~---~~~~v~w~~~~~---------~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      .|+.++|.|.+.+.   |.|.|.|||+..         .+...         ....|.|.++...|.|.|.|++.+..+.
T Consensus        26 eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Cevsn~~g~  105 (118)
T 2edn_A           26 TGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTC  105 (118)
T ss_dssp             TTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEEEECSSCE
T ss_pred             CCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEEEEEEEcCCc
Confidence            38999999999875   688999999741         11110         1367999999999999999999999887


Q ss_pred             ceeEeeEEEe
Q psy12725         60 AQASGELKLG   69 (119)
Q Consensus        60 ~~~~~~~~v~   69 (119)
                      ......+.|.
T Consensus       106 ~s~~~~L~V~  115 (118)
T 2edn_A          106 DSCGFNIDVE  115 (118)
T ss_dssp             EEEEECCEEE
T ss_pred             EEEEEEEEEE
Confidence            7667777764

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=8.3e-14  Score=69.76  Aligned_cols=65  Identities=17%  Similarity=0.251  Sum_probs=51.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+  .|.+.+.|+|++..+....         ...|.|.+++.+|.|.|.|.+.|.  .......+.|.
T Consensus        21 ~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~--~~~~~a~L~V~   94 (100)
T 2yuz_A           21 LGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY--NVTLPAKVHVI   94 (100)
T ss_dssp             TTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS--CCCEEEEEEEE
T ss_pred             CCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC--CeeEEEEEEEe
Confidence            48899999999  6888999999998875432         136999999999999999999997  33344555553

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.51  E-value=6e-14  Score=80.74  Aligned_cols=113  Identities=15%  Similarity=0.286  Sum_probs=68.7

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeCC--cc---C---C-----------C-----------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKDG--KP---V---P-----------D-----------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~~--~~---~---~-----------~-----------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.|+|.|.+.+.  +...+.|||..  ..   +   .           .           ....+|.|.+++.+|+|.
T Consensus        13 ~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~   92 (248)
T 3u2s_H           13 PGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLRVEDTAT   92 (248)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEE
T ss_pred             CCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCHHHCEE
Confidence            48999999999752  34679999732  11   0   0           0           011348999999999999


Q ss_pred             EEEEEEcCC----------------------CCceeEeeEEEee-ecCCCeeeecCCccccCCCCcEEEEeEEccC-C-C
Q psy12725         49 YQCVIRNEQ----------------------ESAQASGELKLGG-RFDPPVIKESFSDETLNPGPNYYFKCIASGN-P-T  103 (119)
Q Consensus        49 y~C~~~~~~----------------------~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~  103 (119)
                      |.|.+.+..                      ........+.+.. ...+|.+........+..|+.+.|.|.+.+. | .
T Consensus        93 Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~  172 (248)
T 3u2s_H           93 YFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP  172 (248)
T ss_dssp             EEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEEEEEEEBSSC
T ss_pred             EEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEEEEeeEECCC
Confidence            999987631                      0111123344431 1234555544444445678999999999875 4 3


Q ss_pred             CeEEEEECCE
Q psy12725        104 PEISWYLDGK  113 (119)
Q Consensus       104 ~~~~W~~~~~  113 (119)
                      ..+.|++++.
T Consensus       173 ~~v~W~~~g~  182 (248)
T 3u2s_H          173 VTVSWNSGAL  182 (248)
T ss_dssp             CEEEEGGGTB
T ss_pred             eEEEEeECCc
Confidence            4699999875

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.51  E-value=1.5e-13  Score=68.10  Aligned_cols=66  Identities=21%  Similarity=0.341  Sum_probs=53.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC-----CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN-----EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~-----~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.+  .+.+.|++++..+....     ...|.|.+++.+|.|.|.|.+.|..+.......+.+
T Consensus        15 ~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V   85 (95)
T 4hwu_A           15 PGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYACTAARTVDSETWIFMVNV   85 (95)
T ss_dssp             TTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEeCCEEEECcCCcccCEEEEEEEccCCCcEEEEEEEEE
Confidence            4899999999986  47999999998775432     467999999999999999999998765555555554

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.51  E-value=1e-13  Score=68.25  Aligned_cols=55  Identities=22%  Similarity=0.514  Sum_probs=45.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.+.|.|.+.+ |.+.+.|+||++.+....         ...|.|.+++.+|.|.|.|.+.|.
T Consensus        20 ~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   83 (91)
T 2lvc_A           20 TSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE   83 (91)
T ss_dssp             TTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC
T ss_pred             CCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce
Confidence            3899999999965 888999999998876432         236999999999999999998654

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.49  E-value=1.5e-13  Score=70.72  Aligned_cols=66  Identities=18%  Similarity=0.380  Sum_probs=52.9

Q ss_pred             ccEEEEEEeccCCCCeeEEeeCCccCCCCC-------------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          3 ALKFFTCKYEGNPVKTISWMKDGKPVPDHN-------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         3 ~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~-------------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      +...|.|.+.|.|.+.+.|+|++..+....             ...|.|.+++..|.|.|.|.+.|..+.......+.+
T Consensus        21 ~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v   99 (118)
T 1wwc_A           21 LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF   99 (118)
T ss_dssp             CEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             cceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEEE
Confidence            456789999999999999999998875432             246899999999999999999998766555554443

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.49  E-value=7.7e-14  Score=78.32  Aligned_cols=66  Identities=18%  Similarity=0.367  Sum_probs=53.9

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeE
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL   66 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~   66 (119)
                      .|+.+.|.|.+.+. |.+.+.|+|++..+...       ....|.|.+++.+|.|.|+|.+.|..+.......+
T Consensus       130 ~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L  203 (207)
T 3rbs_A          130 GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL  203 (207)
T ss_dssp             TTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEE
Confidence            37889999999998 89999999999877432       12359999999999999999999987765555444

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.48  E-value=4e-13  Score=67.46  Aligned_cols=64  Identities=17%  Similarity=0.338  Sum_probs=50.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCCC-----------CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHNE-----------PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~-----------~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+ +.+.+.|+|++..+.....           ..|.|.+++.+|.|.|.|.+.|    ......+.|.
T Consensus        21 ~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~~~l~V~   95 (103)
T 1x44_A           21 CGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQSSAKLSVD   95 (103)
T ss_dssp             TTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----EEEEEEEEEE
T ss_pred             CCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC----CcEEEEEEEe
Confidence            4889999999977 6689999999987754331           4689999999999999999976    2334445543

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.45  E-value=4.1e-13  Score=68.02  Aligned_cols=59  Identities=29%  Similarity=0.475  Sum_probs=48.3

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeCCccCCCCC-----------------CCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKDGKPVPDHN-----------------EPVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~~~~~~~~~-----------------~~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      .|+.+.|.|.+.+.  +.+.+.|++++..+....                 ...|.|.+++..|.|.|.|.+.|..+.
T Consensus        24 ~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~  101 (112)
T 3so5_A           24 XGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGS  101 (112)
T ss_dssp             TTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCCeEEEEEEeCCCc
Confidence            48999999999855  457999999987765321                 257999999999999999999998654

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.44  E-value=7.9e-13  Score=65.33  Aligned_cols=55  Identities=13%  Similarity=0.208  Sum_probs=45.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.+.|.|.+.+ +.+.+.|+|++..+....         ...|.|.+++.+|.|.|.|.+.|.
T Consensus        19 ~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~   82 (93)
T 1waa_A           19 VGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT   82 (93)
T ss_dssp             TTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE
T ss_pred             CCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC
Confidence            4899999999976 557899999998875422         237999999999999999999774

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=3e-13  Score=67.99  Aligned_cols=55  Identities=18%  Similarity=0.420  Sum_probs=46.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.+.|.|.+.+.+.+ +.|+|++..+...         ....|.|.+++.+|.|.|.|.+.|.
T Consensus        24 ~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~   87 (104)
T 2e6p_A           24 TSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGV   87 (104)
T ss_dssp             SSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSC
T ss_pred             CCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCc
Confidence            38999999999988887 9999999877542         1246999999999999999999886

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.44  E-value=6.9e-12  Score=69.15  Aligned_cols=112  Identities=15%  Similarity=0.210  Sum_probs=74.6

Q ss_pred             CCccEEEEEEeccCCCCe-eEEee--CCccC-CC-CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCC
Q psy12725          1 MLALKFFTCKYEGNPVKT-ISWMK--DGKPV-PD-HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP   75 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~-v~w~~--~~~~~-~~-~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~   75 (119)
                      +|+++.|.|.+.. +.+. +.|..  +...+ .. .....+.+.+++. | |.|.|.+............+.+  ...|.
T Consensus        13 ~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~~~~~~~l~V--~~~P~   87 (185)
T 1iam_A           13 RGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLPGNNRKVYELSNVQE-D-SQPMCYSNCPDGQSTAKTFLTV--YWTPE   87 (185)
T ss_dssp             TTEEEEEEEEECS-SSCSEEEEECSSCEEEECSSSSSEEEEEEEEECS-C-BCCEEEEECSSCEEEEECEEEE--EBCCS
T ss_pred             CCCCEEEEEEccC-CCCccceEEeeCCCccEeccCCceeEEEEEecCc-C-CEEEEEEECCCCceEEEEEEEE--eCCCC
Confidence            4999999999964 5454 66742  11111 11 2234678888873 3 8999998765443444444444  34455


Q ss_pred             eeeecCCccccCCCCcEEEEeEEccC-CCC--eEEEEECCEEccc
Q psy12725         76 VIKESFSDETLNPGPNYYFKCIASGN-PTP--EISWYLDGKKLVN  117 (119)
Q Consensus        76 ~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~--~~~W~~~~~~~~~  117 (119)
                      .+.+.+....+.+|+.++|.|.+.+. |..  .+.|+++++.+..
T Consensus        88 ~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~  132 (185)
T 1iam_A           88 RVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKR  132 (185)
T ss_dssp             EEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEE
T ss_pred             CCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEccc
Confidence            66666655568999999999999875 443  4899999998753

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.44  E-value=3.1e-13  Score=71.17  Aligned_cols=60  Identities=27%  Similarity=0.524  Sum_probs=49.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC----------------------CCCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH----------------------NEPVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~----------------------~~~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...                      ....|.|.+++.+|.|.|.|.+.|..+
T Consensus        35 ~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  114 (137)
T 3qr2_A           35 VGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPD  114 (137)
T ss_dssp             TTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSCCGGGCEEEEEEEECCTT
T ss_pred             CCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCCCcccCEEEEEEEEecCC
Confidence            4899999999999999999999977654211                      235799999999999999999999876


Q ss_pred             Cc
Q psy12725         59 SA   60 (119)
Q Consensus        59 ~~   60 (119)
                      ..
T Consensus       115 ~~  116 (137)
T 3qr2_A          115 RN  116 (137)
T ss_dssp             SS
T ss_pred             cc
Confidence            54

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.43  E-value=6.3e-13  Score=67.08  Aligned_cols=65  Identities=28%  Similarity=0.405  Sum_probs=50.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.+.+.+ +.|+|++..+....         ...|.|.+++.+|.|.|.|.+.|.  .......+.+
T Consensus        22 ~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~--~~~~~~~l~V   95 (106)
T 2dlt_A           22 AAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGY--ALSLSAKLNF   95 (106)
T ss_dssp             SSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETS--CCCCCBCEEE
T ss_pred             CCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccC--CceEEEEEEE
Confidence            48999999999987766 99999998775432         137999999999999999999997  2333444444

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.43  E-value=2.2e-12  Score=73.36  Aligned_cols=108  Identities=16%  Similarity=0.291  Sum_probs=68.6

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeCC--cc---C----------------CC---------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKDG--KP---V----------------PD---------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~~--~~---~----------------~~---------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.|+|.|.+.+.  ....+.|||..  ..   +                ..         .....|.|.+++.+|+|.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~   93 (230)
T 3n9g_H           14 PGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRSEDTAV   93 (230)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCChhhCEE
Confidence            48999999999652  34579999732  11   0                00         011349999999999999


Q ss_pred             EEEEEEcCCC-----C---ceeEeeEEEeee-cCCCeeeecCCccccCCCCcEEEEeEEccC-C-CCeEEE
Q psy12725         49 YQCVIRNEQE-----S---AQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGN-P-TPEISW  108 (119)
Q Consensus        49 y~C~~~~~~~-----~---~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~~~W  108 (119)
                      |.|.+.+...     .   ......+.|... ..+|.+........+..|+.+.|.|.+.+. | .+.+.|
T Consensus        94 Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W  164 (230)
T 3n9g_H           94 YYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW  164 (230)
T ss_dssp             EEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE
Confidence            9999987531     1   112233444311 234555543444445689999999999875 4 236899

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.43  E-value=1e-12  Score=72.20  Aligned_cols=68  Identities=22%  Similarity=0.481  Sum_probs=56.9

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      |+.+.|.|.+.+.|.+.+.|++++..+...       ....|.|..+..+|.|.|.|.+.|..+.......+.|.
T Consensus       113 g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          113 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             CCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence            889999999998898999999999877542       35679999999999999999999987766666655553

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.43  E-value=7.8e-14  Score=67.03  Aligned_cols=52  Identities=21%  Similarity=0.528  Sum_probs=45.4

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecC-CCCCCeEEEEEEEc
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSV-RKEDKGMYQCVIRN   55 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~-~~~d~g~y~C~~~~   55 (119)
                      |++|+|.|.+.+.|  .|+|+|++..+....+..|.|.++ ..+|+|.|.|.+..
T Consensus        14 G~~v~L~C~~~g~P--~i~W~kdg~~l~~~~~~~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E           14 GTSVELTCPLDSDE--NLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             TTEEEEECSSCCCS--SCEEEETTEECTTCCSSCCBCCSCCTTTTCSCEEEECSS
T ss_pred             CCeEEEEEECCCCC--cEEEEECCEECcCCCCCEEEECccCccCcCEEEEEEEcc
Confidence            88999999999877  399999999887656778999996 78999999999865

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.43  E-value=8.6e-13  Score=73.74  Aligned_cols=68  Identities=25%  Similarity=0.454  Sum_probs=55.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC----------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~----------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....          ...|.|.+++..|.|.|.|.+.|..+.......+.+
T Consensus       131 ~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V  208 (212)
T 2r15_A          131 EGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV  208 (212)
T ss_dssp             TTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEE
Confidence            38899999999999999999999998775422          238999999999999999999998776555555554

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.43  E-value=3.9e-12  Score=74.69  Aligned_cols=69  Identities=19%  Similarity=0.337  Sum_probs=56.5

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEec-CCCCCCeEEEEEEEcCCCCceeEeeEEEee
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDS-VRKEDKGMYQCVIRNEQESAQASGELKLGG   70 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~-~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~   70 (119)
                      |+.+.|.|.+.+.|.+.+.|++++..+...         ....|.+.+ +...|.|.|.|.+.|..+.......+.+..
T Consensus       119 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~  197 (305)
T 2nzi_A          119 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD  197 (305)
T ss_dssp             TCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEB
T ss_pred             CCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEec
Confidence            889999999999999999999998876532         224678888 999999999999999987766666666653

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.42  E-value=1.8e-12  Score=71.82  Aligned_cols=68  Identities=28%  Similarity=0.509  Sum_probs=56.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC-----CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~-----~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+..     .....|.|..++..|.|.|+|.+.|..+.......+.|
T Consensus       127 ~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V  199 (201)
T 3s97_C          127 MGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV  199 (201)
T ss_dssp             TTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecCCCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEE
Confidence            378999999999989999999999887653     24578999999999999999999998766655555554

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.42  E-value=1.4e-12  Score=73.51  Aligned_cols=59  Identities=22%  Similarity=0.522  Sum_probs=53.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+.......|.|..++..|.|.|+|.+.|..+.
T Consensus       132 ~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  190 (218)
T 3k0w_A          132 PGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDS  190 (218)
T ss_dssp             TTCCEEEECEEEBSSCCEEEEEETTEECTTCCSSEEEESSCCGGGCEEEEEEEECSSCE
T ss_pred             CCCcEEEEEEecccCCCeEEEEECCEECCCCCCCEEEEeecChhcCEEEEEEEEcCCCC
Confidence            38899999999999999999999999987777889999999999999999999997654

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.42  E-value=4.2e-12  Score=71.20  Aligned_cols=106  Identities=15%  Similarity=0.273  Sum_probs=67.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccCC------------C----------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPVP------------D----------HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~~------------~----------~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|.+.+.. +.+.|||..  ..+.            .          .....|.|.+++.+|+|.|.|.+.+.
T Consensus        15 ~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   93 (207)
T 1ypz_E           15 EGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTW   93 (207)
T ss_dssp             TTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEEEEEEECB
T ss_pred             cCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            489999999997644 479999843  1110            0          11247999999999999999999876


Q ss_pred             CC---------C--ceeEeeEEEeee---cCCCeeeecCCccccCCCCcEEEEeEEccC-CC-CeEEEEECCEEcc
Q psy12725         57 QE---------S--AQASGELKLGGR---FDPPVIKESFSDETLNPGPNYYFKCIASGN-PT-PEISWYLDGKKLV  116 (119)
Q Consensus        57 ~~---------~--~~~~~~~~v~~~---~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~  116 (119)
                      .+         .  ......+.|...   ..+|.+...       . ..+.|.|.+.+. |. +.+.|+++ ..+.
T Consensus        94 ~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v~~~-------~-~~~~l~C~~~g~~P~~~~v~W~~~-~~l~  160 (207)
T 1ypz_E           94 HISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIM-------K-NGTNVACLVKDFYPKEVTISLRSS-KKIV  160 (207)
T ss_dssp             CCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEEEEE-------E-ETTEEEEEEEEESSSCCEEEEECS-SEEE
T ss_pred             CcccccccccceeeecCccEEEEccCCCCCCCCeEEEe-------C-CCCeEEEEEeeEeCCCeEEEEecC-Cccc
Confidence            31         1  112234444321   112333221       1 136899998875 44 68999998 5543

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.42  E-value=3.9e-12  Score=62.93  Aligned_cols=52  Identities=15%  Similarity=0.347  Sum_probs=43.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.+.|.|.+ +.+.+.+.|+|++..+....         ...|.|.+++..|.|.|.|.+
T Consensus        22 ~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (95)
T 2k1m_A           22 AGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA   82 (95)
T ss_dssp             TTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE
T ss_pred             CCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE
Confidence            38999999999 67888999999988764321         136999999999999999999

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=9e-13  Score=66.13  Aligned_cols=64  Identities=17%  Similarity=0.372  Sum_probs=50.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+ +.+.+.|++++..+....         ...|.|.+++.+|.|.|.|.+.|.    .....+.|.
T Consensus        22 ~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~~~l~V~   94 (103)
T 2edf_A           22 PGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEAS----KSTASLHVE   94 (103)
T ss_dssp             TTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSSC----EEEEEEEEC
T ss_pred             CCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEccC----CcEEEEEEe
Confidence            4899999999987 778899999998774421         236899999999999999999882    334445543

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.41  E-value=1.1e-12  Score=66.10  Aligned_cols=67  Identities=16%  Similarity=0.331  Sum_probs=51.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCc-cCCC-----------------CCCCeEEEecCCCCCCeEEEEEEEcCCCCcee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGK-PVPD-----------------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA   62 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~-~~~~-----------------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~   62 (119)
                      .|+.+.|.|.+.+.+.+.+.|++++. .+..                 .....|.|.+++.+|+|.|+|.+.+ .+....
T Consensus        20 ~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n-~~~~~~   98 (108)
T 3m45_A           20 EGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFT-MPVKTS   98 (108)
T ss_dssp             TTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCEEEEEEECS-SSCEEE
T ss_pred             eCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCeEEEEEEEc-CCCcEE
Confidence            48999999999998888999998764 1100                 0235799999999999999999999 555544


Q ss_pred             EeeEEE
Q psy12725         63 SGELKL   68 (119)
Q Consensus        63 ~~~~~v   68 (119)
                      ...+.|
T Consensus        99 ~~~L~V  104 (108)
T 3m45_A           99 KAYLTV  104 (108)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555554

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.41  E-value=1.1e-12  Score=67.99  Aligned_cols=68  Identities=12%  Similarity=0.223  Sum_probs=52.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCC--------C----------CCCCeEEEecCCCCCCeEEEEEEEcCCCCcee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVP--------D----------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA   62 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~--------~----------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~   62 (119)
                      .|+.++|.|.+.+.+.+.+.|++++..+.        .          .....|.|.+++.+|+|.|.|.+.+. +....
T Consensus        15 ~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~-g~~~~   93 (124)
T 3rbg_A           15 EGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSD-SVSTK   93 (124)
T ss_dssp             TTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEESS-SEEEE
T ss_pred             CCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEEcC-CCCcE
Confidence            48999999999988889999997554311        0          01357899999999999999999998 55555


Q ss_pred             EeeEEEe
Q psy12725         63 SGELKLG   69 (119)
Q Consensus        63 ~~~~~v~   69 (119)
                      ...+.|.
T Consensus        94 ~~~l~V~  100 (124)
T 3rbg_A           94 EVKVIVL  100 (124)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5555554

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=1.6e-12  Score=66.51  Aligned_cols=65  Identities=17%  Similarity=0.312  Sum_probs=49.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC----------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...          ....|.|.+++.+|.|.|.|.+    +.......+.|.
T Consensus        27 ~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~----g~~~~~~~L~V~  101 (115)
T 2cr6_A           27 EGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVT  101 (115)
T ss_dssp             TTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE----TTEECCEEEEEE
T ss_pred             CCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE----CCeeEEEEEEEE
Confidence            4899999999999888899999998765432          2247999999999999999993    233334455553

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.40  E-value=5.3e-12  Score=62.99  Aligned_cols=63  Identities=17%  Similarity=0.326  Sum_probs=49.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+. .|.+.+.|++++..+....         ...|.|.+++.+|.|.|.|.+    +.......+.|
T Consensus        22 ~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----g~~~~~~~l~V   93 (100)
T 2yuv_A           22 KGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKCSTELFV   93 (100)
T ss_dssp             TTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE----TTEEEEEEEEE
T ss_pred             CCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE----CCceEEEEEEE
Confidence            388999999998 6888999999998774321         236899999999999999999    33344445554

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.40  E-value=1.7e-12  Score=69.03  Aligned_cols=68  Identities=18%  Similarity=0.340  Sum_probs=51.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEee---------CCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCcee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMK---------DGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA   62 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~---------~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~   62 (119)
                      .|+.++|.|.+.+.+.+.+.|++         ++..+...         ....|.|.+++..|+|.|+|.+.+. +....
T Consensus        52 ~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~-~~~~~  130 (145)
T 1z9m_A           52 AGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTM-PVRTA  130 (145)
T ss_dssp             TTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEEECSSEEEEEECSCCGGGCEEEEEEECSS-SCEEE
T ss_pred             cCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEecCCCCeEEEEECCCChhhCEEEEEEEEcC-CCceE
Confidence            48999999999988888999993         33322211         1357899999999999999999998 55555


Q ss_pred             EeeEEEe
Q psy12725         63 SGELKLG   69 (119)
Q Consensus        63 ~~~~~v~   69 (119)
                      ...+.|.
T Consensus       131 ~~~L~V~  137 (145)
T 1z9m_A          131 KSLVTVL  137 (145)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5555554

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.40  E-value=1.2e-12  Score=71.82  Aligned_cols=68  Identities=7%  Similarity=0.091  Sum_probs=55.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+. .....|.|.+++.+|.|.|+|.+.+..+.......+.|.
T Consensus       111 ~g~~~~l~C~~~~~p~~~v~W~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~  178 (184)
T 2ny1_B          111 QGQSLTLTLESPPGSSPSVQCRSPRGKNI-QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL  178 (184)
T ss_dssp             TTCCEEEEEECCTTCCCEEEEECTTSCEE-EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cCCCEEEEEEcCCCCCCEEEEEeCCCccc-cCceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEE
Confidence            48899999999888999999999876553 356789999999999999999999876555555555543

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=5.7e-12  Score=64.14  Aligned_cols=54  Identities=30%  Similarity=0.546  Sum_probs=45.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.+.|.|.+. .|.+.+.|+|++..+....         ...|.|.+++.+|.|.|.|.+.|
T Consensus        27 ~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   89 (113)
T 2cpc_A           27 RLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD   89 (113)
T ss_dssp             TTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS
T ss_pred             cCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEEec
Confidence            388999999995 6888999999998764321         25799999999999999999987

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.39  E-value=6.1e-12  Score=63.35  Aligned_cols=53  Identities=19%  Similarity=0.359  Sum_probs=44.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-C------C---CeEEEecCCCCCCeEEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-N------E---PVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-~------~---~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      .|+.+.|.|.+ +.|.+.+.|+|++..+... .      .   ..|.|.+++.+|+|.|.|.+.
T Consensus        30 ~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   92 (104)
T 1pd6_A           30 KGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVG   92 (104)
T ss_dssp             TTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEET
T ss_pred             cCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEEC
Confidence            48999999999 6788899999999876543 1      1   279999999999999999994

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.39  E-value=9e-12  Score=68.65  Aligned_cols=69  Identities=28%  Similarity=0.343  Sum_probs=54.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEee--CCccCCCC------------CCCeEEEecCC-CCCCeEEEEEEEcCCCCceeEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMK--DGKPVPDH------------NEPVFRIDSVR-KEDKGMYQCVIRNEQESAQASGE   65 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~--~~~~~~~~------------~~~~l~~~~~~-~~d~g~y~C~~~~~~~~~~~~~~   65 (119)
                      .|+.+.|.|.+.+.|.+.+.|++  ++..+...            ....|.|.+++ .+|.|.|.|.+.|..+.......
T Consensus       106 ~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~  185 (190)
T 2wv3_A          106 EGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTV  185 (190)
T ss_dssp             TTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEE
T ss_pred             CCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEE
Confidence            38899999999999999999999  66554321            11369999999 69999999999999877666665


Q ss_pred             EEEe
Q psy12725         66 LKLG   69 (119)
Q Consensus        66 ~~v~   69 (119)
                      +.|.
T Consensus       186 l~V~  189 (190)
T 2wv3_A          186 LRVR  189 (190)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5553

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.38  E-value=5.8e-12  Score=72.66  Aligned_cols=108  Identities=17%  Similarity=0.308  Sum_probs=65.3

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeCC--ccCC-----------------CC-----------CCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKDG--KPVP-----------------DH-----------NEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~~--~~~~-----------------~~-----------~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.|+|.|.+.+.  ....+.|||..  ....                 ..           ....|.|.+++.+|+|.
T Consensus        37 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~  116 (256)
T 3sob_H           37 PGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAV  116 (256)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEE
T ss_pred             CCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCcccCEE
Confidence            48999999999653  24579999732  1100                 00           11249999999999999


Q ss_pred             EEEEEEcCCC-----------CceeEeeEEEee-ecCCCeeeecCCccccCCCCcEEEEeEEccC-C-CCeEEE
Q psy12725         49 YQCVIRNEQE-----------SAQASGELKLGG-RFDPPVIKESFSDETLNPGPNYYFKCIASGN-P-TPEISW  108 (119)
Q Consensus        49 y~C~~~~~~~-----------~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~~~W  108 (119)
                      |.|.+.+..+           .......+.|.. ...+|.+........+.+|+.+.|.|.+.+. | ...+.|
T Consensus       117 Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~W  190 (256)
T 3sob_H          117 YYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW  190 (256)
T ss_dssp             EEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEEE
Confidence            9999986431           111223344432 1234555533333345689999999998774 4 336899

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.38  E-value=5.1e-12  Score=70.48  Aligned_cols=70  Identities=26%  Similarity=0.417  Sum_probs=55.6

Q ss_pred             CCccEEEEEE-eccCCCCeeEEeeCCc-cCCC----------------CCCCeEEEecCCCCCCeEEEEEEEcCCCCcee
Q psy12725          1 MLALKFFTCK-YEGNPVKTISWMKDGK-PVPD----------------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA   62 (119)
Q Consensus         1 ~g~~~~l~c~-~~~~~~~~v~w~~~~~-~~~~----------------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~   62 (119)
                      .|+.+.|.|. ..+.|.+.+.|++++. .+..                .....|.|.+++.+|.|.|.|.+.|..+....
T Consensus       118 ~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  197 (212)
T 1f97_A          118 IGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMR  197 (212)
T ss_dssp             TTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEE
T ss_pred             CCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccc
Confidence            4889999999 6888999999999998 6643                23567999999999999999999999877644


Q ss_pred             EeeEEEee
Q psy12725         63 SGELKLGG   70 (119)
Q Consensus        63 ~~~~~v~~   70 (119)
                      +..+.+.+
T Consensus       198 s~~~~l~V  205 (212)
T 1f97_A          198 SEAAHMDA  205 (212)
T ss_dssp             CCCEEEEE
T ss_pred             cceEEEEE
Confidence            44444443

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=1.1e-11  Score=62.17  Aligned_cols=64  Identities=25%  Similarity=0.413  Sum_probs=48.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+ +.|.+.+.|++++..+....         ...|.|.+++.+|.|.|.|.    .+.......+.|.
T Consensus        22 ~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g~~~~~~~l~V~   94 (103)
T 2dku_A           22 EKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD----IGQAQSRAQLLVQ   94 (103)
T ss_dssp             TTSEEEEEEEC-SSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE----CSSCBCCEEEEEE
T ss_pred             CCCcEEEEEEe-CCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE----eCCceEEEEEEEe
Confidence            48999999995 77888999999998775421         12799999999999999998    3333444555554

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.38  E-value=2.1e-12  Score=71.20  Aligned_cols=68  Identities=19%  Similarity=0.280  Sum_probs=54.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCCC---------CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHNE---------PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~---------~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+.....         ..|.|..++..|.|.|.|.+.|..+.......+.|
T Consensus       117 ~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          117 QGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             TTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence            378899999999889999999999987754321         26889999999999999999998766555554443

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=5.4e-12  Score=63.53  Aligned_cols=65  Identities=15%  Similarity=0.227  Sum_probs=49.6

Q ss_pred             CCccEEEEEEeccCCC-CeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPV-KTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~-~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+.+. +.+.|||++..+....         ...|.|.+++.+|+|.|+|.+.+.    .....+.|.
T Consensus        22 ~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~----~~~a~L~V~   96 (104)
T 2eny_A           22 EGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRGL----TSKASLIVR   96 (104)
T ss_dssp             SSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETTE----EEEECEEEE
T ss_pred             CCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECCe----eEEEEEEEe
Confidence            4899999999988764 4799999998875432         236999999999999999987542    345555554

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.37  E-value=1.7e-12  Score=66.53  Aligned_cols=60  Identities=32%  Similarity=0.496  Sum_probs=46.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----------CCCeEEEec-----CCCCCCeEEEEEEEcCCCCc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----------NEPVFRIDS-----VRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----------~~~~l~~~~-----~~~~d~g~y~C~~~~~~~~~   60 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...           ....+.+..     ++..|.|.|.|.+.|..+..
T Consensus        23 ~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~C~a~N~~G~~   98 (117)
T 2v9t_A           23 KGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEA   98 (117)
T ss_dssp             TTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEEEEEEEETTEEE
T ss_pred             CCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEEEEEEEeCccce
Confidence            4899999999999999999999998776432           123344443     46899999999999987654

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.37  E-value=1.6e-11  Score=74.26  Aligned_cols=109  Identities=17%  Similarity=0.202  Sum_probs=72.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC-----------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN-----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~-----------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....           ...|.|.++...|.|.|.|.+.|..+.......+.+.
T Consensus       114 ~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~  193 (389)
T 2jll_A          114 EGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA  193 (389)
T ss_dssp             TTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             cCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEec
Confidence            38899999999999999999999998775432           3468999999999999999999987765555444442


Q ss_pred             eecCCCeeeecCCccccCCCCcEEEEeEEc----cCCCC--eEEEEECCE
Q psy12725         70 GRFDPPVIKESFSDETLNPGPNYYFKCIAS----GNPTP--EISWYLDGK  113 (119)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~----~~p~~--~~~W~~~~~  113 (119)
                      ....+|....    .....+..+.+.|...    +.|..  .+.|.+++.
T Consensus       194 ~~P~~P~~~~----~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~  239 (389)
T 2jll_A          194 DVPSSPYGVK----IIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVAS  239 (389)
T ss_dssp             CCCCCCEEEE----EEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTC
T ss_pred             CCCCCCcceE----EeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCC
Confidence            2112221111    0112346678887632    22322  467777653

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.37  E-value=3.6e-12  Score=71.43  Aligned_cols=69  Identities=29%  Similarity=0.556  Sum_probs=56.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeE-eeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS-GELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~-~~~~v~   69 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...      ....|.|..++..|.|.|+|.+.|..+..... ..+.|.
T Consensus       124 ~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~  199 (212)
T 2yd1_A          124 VGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK  199 (212)
T ss_dssp             TTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             cCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEE
Confidence            3889999999999999999999999877542      23589999999999999999999987655433 455554

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.37  E-value=2.6e-11  Score=76.21  Aligned_cols=114  Identities=16%  Similarity=0.314  Sum_probs=72.0

Q ss_pred             CccEEEEEEeccC-CCC-eeEEeeCCccCCC-------C-CC-----CeEEEecCCCCCCeEEEEEEEcCCCCceeEe--
Q psy12725          2 LALKFFTCKYEGN-PVK-TISWMKDGKPVPD-------H-NE-----PVFRIDSVRKEDKGMYQCVIRNEQESAQASG--   64 (119)
Q Consensus         2 g~~~~l~c~~~~~-~~~-~v~w~~~~~~~~~-------~-~~-----~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~--   64 (119)
                      |+.+.|.|.+.+. |.+ .+.|++++.....       . .+     +.|.|...... .|.|+|.+.|..+......  
T Consensus       150 ~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~  228 (512)
T 1zvo_C          150 NSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFR  228 (512)
T ss_pred             CCeEEEEEEEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEec
Confidence            4678999999886 655 8999986543210       0 11     23566555555 8999999999875543332  


Q ss_pred             ---------eEEEeee-------------------------------------------------cCCCeeeecC-Cccc
Q psy12725         65 ---------ELKLGGR-------------------------------------------------FDPPVIKESF-SDET   85 (119)
Q Consensus        65 ---------~~~v~~~-------------------------------------------------~~~~~~~~~~-~~~~   85 (119)
                               .+.+.+.                                                 ..+|.+...+ ....
T Consensus       229 ~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~  308 (512)
T 1zvo_C          229 WPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQD  308 (512)
T ss_pred             CCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHH
Confidence                     1222110                                                 0123332222 2233


Q ss_pred             cCCCCcEEEEeEEccCCCC--eEEEEECCEEcc
Q psy12725         86 LNPGPNYYFKCIASGNPTP--EISWYLDGKKLV  116 (119)
Q Consensus        86 ~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~  116 (119)
                      +..|+.+.|.|.+.+..++  .+.|+++|..+.
T Consensus       309 ~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~  341 (512)
T 1zvo_C          309 LWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPT  341 (512)
T ss_pred             hccCCceEEEEEEeceECCCeEEEEEECCEecc
Confidence            5679999999999887443  899999998765

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=6e-13  Score=66.60  Aligned_cols=54  Identities=19%  Similarity=0.374  Sum_probs=45.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC-------------CCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN-------------EPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~-------------~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.+.|.|.+.+.+ +.+.|+|++..+....             ...|.|.++..+|.|.|.|.+.+
T Consensus        22 ~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   88 (101)
T 2edk_A           22 VGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNG   88 (101)
T ss_dssp             SSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEECSS
T ss_pred             CCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEEcC
Confidence            488999999999878 8999999998775432             13588999999999999999876

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.36  E-value=2.5e-11  Score=61.32  Aligned_cols=53  Identities=19%  Similarity=0.375  Sum_probs=42.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.+.|.|.+.+.  +.+.|++++..+....         ...|.|.+++.+|.|.|.|.+.+
T Consensus        22 ~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   83 (108)
T 2dm7_A           22 EGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ   83 (108)
T ss_dssp             TTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEETT
T ss_pred             CCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEcC
Confidence            48999999999764  6899999988765321         12499999999999999999944

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.35  E-value=3.4e-12  Score=70.31  Aligned_cols=68  Identities=19%  Similarity=0.323  Sum_probs=53.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC--------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...        ....|.|..++..|.|.|.|.+.|..+.......+.+
T Consensus       114 ~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          114 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             TTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             CCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            3889999999999999999999998776421        3457999999999999999999997644433444443

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.35  E-value=1.5e-11  Score=68.31  Aligned_cols=112  Identities=14%  Similarity=0.181  Sum_probs=73.2

Q ss_pred             CCccEEEEEEeccCCCC-eeEEeeC--CccCCC-CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCe
Q psy12725          1 MLALKFFTCKYEGNPVK-TISWMKD--GKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPV   76 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~-~v~w~~~--~~~~~~-~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~   76 (119)
                      +|+++.|.|.+.. +.+ .+.|...  ...... .....+.+.+++ +|.+.|.|.+..........+.+.+.  ..|..
T Consensus        16 ~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~g~~~~~~~ls~vs-~d~~~~~C~~~c~~~~~~~~v~l~Vy--~~P~~   91 (196)
T 3bn3_B           16 RGGSLWLNCSTNC-PRPERGGLETSLRRNGTQRGLRWLARQLVDIR-EPETQPVCFFRCARRTLQARGLIRTF--QRPDR   91 (196)
T ss_dssp             TTEEEEEEEEECC-SSCSEEEEECSSEEEEEEEETTEEEEEEEEEC-SSEECCEEEEEETTEEEEEECEEEEE--BCCCC
T ss_pred             CCCeEEEEEeCCC-CCCCccEEEEccCCeeEccccCceEEEEEEEc-cCCCceEEEEECCCCceEEEEEEEEe--cCCCc
Confidence            4899999999964 444 6777431  111111 122347778888 77777999987754334444444443  34444


Q ss_pred             eeecCCccccCCCCcEEEEeEEccC-CCC--eEEEEECCEEcc
Q psy12725         77 IKESFSDETLNPGPNYYFKCIASGN-PTP--EISWYLDGKKLV  116 (119)
Q Consensus        77 ~~~~~~~~~~~~g~~~~l~C~~~~~-p~~--~~~W~~~~~~~~  116 (119)
                      +.+.+....+.+|+.++|.|.+.+. |..  .+.|+++++.+.
T Consensus        92 v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~  134 (196)
T 3bn3_B           92 VELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELI  134 (196)
T ss_dssp             CEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEE
T ss_pred             CEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEee
Confidence            4444444458899999999999876 443  389999998875

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.35  E-value=4.4e-12  Score=70.02  Aligned_cols=68  Identities=16%  Similarity=0.352  Sum_probs=55.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCCC---------CeEEEecCCC-CCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHNE---------PVFRIDSVRK-EDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~---------~~l~~~~~~~-~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+.....         ..|.|..+.. .|.|.|+|.+.|..+.......+.+
T Consensus       117 ~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  194 (197)
T 3lcy_A          117 VGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEI  194 (197)
T ss_dssp             TTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEE
Confidence            378999999999999999999999987754322         5688888885 8999999999999876665555555

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.35  E-value=3.9e-12  Score=70.36  Aligned_cols=67  Identities=19%  Similarity=0.344  Sum_probs=53.9

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEec-CCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDS-VRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~-~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      |+.+.|.|.+.+.|.+.+.|++++..+...         ....|.|.. +...|.|.|+|.+.|..+.......+.|
T Consensus       119 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V  195 (197)
T 2j8h_A          119 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV  195 (197)
T ss_dssp             TCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEE
Confidence            788999999999999999999998876532         224678888 9999999999999998766555555544

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.34  E-value=1.1e-11  Score=69.19  Aligned_cols=68  Identities=24%  Similarity=0.404  Sum_probs=53.0

Q ss_pred             CCccEEEEEEe-ccCCCCeeEEeeCCc--cCCC-----CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKY-EGNPVKTISWMKDGK--PVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~-~~~~~~~v~w~~~~~--~~~~-----~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+ .+.|.+.+.|++++.  .+..     .....|.|..++.+|.|.|+|.+.|..+.......+.|
T Consensus       135 ~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V  210 (214)
T 3jz7_A          135 IGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV  210 (214)
T ss_dssp             TTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECC
T ss_pred             cCCcEEEEecCCCCCCCCEEEEEECCCCCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEE
Confidence            38899999999 788999999999543  2221     24568999999999999999999998766654444443

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.34  E-value=1.1e-11  Score=62.06  Aligned_cols=64  Identities=14%  Similarity=0.279  Sum_probs=48.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+.+.+ +.|++++..+....         ...|.|.+++.+|.|.|.|.    .+.......+.|.
T Consensus        22 ~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g~~~~~~~l~V~   94 (103)
T 2e7b_A           22 EGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS----FGDQTTSATLTVT   94 (103)
T ss_dssp             SSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE----CSSCBCCBCEEEE
T ss_pred             CCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE----ECCcEEEEEEEEE
Confidence            48999999999998888 99999988764321         13599999999999999998    2333344555553

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.34  E-value=2.9e-11  Score=61.55  Aligned_cols=62  Identities=21%  Similarity=0.392  Sum_probs=47.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.+.  +.+.|+|++..+....         ...|.|.+++.+|.|.|.|.+    +.......+.|
T Consensus        33 ~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----~~~~~~~~l~V  103 (113)
T 2edh_A           33 EGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTV  103 (113)
T ss_dssp             TTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE----TTEEEEEEEEE
T ss_pred             CCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe----CCCCEEEEEEE
Confidence            48999999999764  7899999998775321         137999999999999999999    33344445554

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=99.33  E-value=1.2e-11  Score=64.27  Aligned_cols=68  Identities=24%  Similarity=0.430  Sum_probs=48.5

Q ss_pred             CCccEEEEEEeccCCC---CeeEEeeCCccC-----------CC------------------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNPV---KTISWMKDGKPV-----------PD------------------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~---~~v~w~~~~~~~-----------~~------------------~~~~~l~~~~~~~~d~g~   48 (119)
                      +|+.|+|.|.+.....   ..|.|+|.+...           ..                  ....+|.|.+++.+|+|.
T Consensus        19 vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~v~~~D~G~   98 (125)
T 4gos_A           19 IGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKNVQLTDAGT   98 (125)
T ss_dssp             TTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESSCCGGGCEE
T ss_pred             CCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECCCChHHCEE
Confidence            5999999999864332   368999854211           00                  013579999999999999


Q ss_pred             EEEEEEcCCCCceeEeeEEE
Q psy12725         49 YQCVIRNEQESAQASGELKL   68 (119)
Q Consensus        49 y~C~~~~~~~~~~~~~~~~v   68 (119)
                      |.|.+.+..+.....+.++|
T Consensus        99 Y~C~v~~~~g~~~~~v~LkV  118 (125)
T 4gos_A           99 YKCYIITSKGKGNANLEYKT  118 (125)
T ss_dssp             EEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEeCCCeEEEEEEEEE
Confidence            99999997665555555554

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.33  E-value=1.6e-13  Score=70.97  Aligned_cols=68  Identities=18%  Similarity=0.238  Sum_probs=53.8

Q ss_pred             CCccEEEEEEeccCCCCe-eEEeeCCccCCCC-------------C--CCeEEEecCCCCCC-eEEEEEEEcCCCCceeE
Q psy12725          1 MLALKFFTCKYEGNPVKT-ISWMKDGKPVPDH-------------N--EPVFRIDSVRKEDK-GMYQCVIRNEQESAQAS   63 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~-v~w~~~~~~~~~~-------------~--~~~l~~~~~~~~d~-g~y~C~~~~~~~~~~~~   63 (119)
                      .|+.+.|.|.+.+.|.|. +.|++++..+...             .  ...|.|.+++..|. |.|.|.+.|..+.....
T Consensus        27 ~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G~~~~~  106 (122)
T 2cry_A           27 HGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEI  106 (122)
T ss_dssp             TTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEE
T ss_pred             cCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChhhCCceEEEEEECCCCeEEEE
Confidence            488999999999999886 9999998766431             1  23788889999998 99999999998766555


Q ss_pred             eeEEE
Q psy12725         64 GELKL   68 (119)
Q Consensus        64 ~~~~v   68 (119)
                      +.+.+
T Consensus       107 ~~l~V  111 (122)
T 2cry_A          107 IRLKE  111 (122)
T ss_dssp             ECCCC
T ss_pred             EEEEE
Confidence            55544

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.33  E-value=1.7e-11  Score=67.78  Aligned_cols=66  Identities=12%  Similarity=0.392  Sum_probs=51.7

Q ss_pred             CCccEEEEEEeccCCCC-eeEEeeCCccCCCC----CCCeEEEecCCCCCCeEEEEEEEcCCCCce-eEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVK-TISWMKDGKPVPDH----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ-ASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~-~v~w~~~~~~~~~~----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~-~~~~~~v   68 (119)
                      .|+.+.|.|.+.+.|.+ .+.|++++..+...    ....|.|.+++  |.|.|.|.+.|..+... ....+.|
T Consensus       120 ~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          120 ANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             TTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTSSCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCcCCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            38899999999999988 99999999887543    45678888776  78999999999876543 3444443

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.33  E-value=1.6e-11  Score=69.82  Aligned_cols=69  Identities=25%  Similarity=0.365  Sum_probs=54.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEee----CCccCCCCC-----------------CCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMK----DGKPVPDHN-----------------EPVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~----~~~~~~~~~-----------------~~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      .|+.+.|.|.+.+.|.+.+.|++    ++..+....                 ...|.|..++..|.|.|+|.+.|..+.
T Consensus       128 ~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~  207 (241)
T 3grw_A          128 LGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGV  207 (241)
T ss_dssp             TTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             CCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcce
Confidence            38899999999999999999999    776654321                 235899999999999999999998876


Q ss_pred             ceeEeeEEEe
Q psy12725         60 AQASGELKLG   69 (119)
Q Consensus        60 ~~~~~~~~v~   69 (119)
                      ......+.+.
T Consensus       208 ~~~~~~l~V~  217 (241)
T 3grw_A          208 AEKAFWLSVH  217 (241)
T ss_dssp             EEEEEEEEC-
T ss_pred             EEEEEEEEec
Confidence            6666655554

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.32  E-value=3.6e-11  Score=73.17  Aligned_cols=76  Identities=24%  Similarity=0.345  Sum_probs=53.3

Q ss_pred             CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCeeeecCCccc-cCCCC-cEEEEeEEccC-CC--CeEEE
Q psy12725         34 PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDET-LNPGP-NYYFKCIASGN-PT--PEISW  108 (119)
Q Consensus        34 ~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~g~-~~~l~C~~~~~-p~--~~~~W  108 (119)
                      .+|.|.+++.+|+|.|.|.+.+..+.....+.+.+.   .+|.+...+.... +..|+ .+.|.|.+.+. |.  +.+.|
T Consensus       254 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~---~pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP~~~~~VtW  330 (401)
T 3f8u_B          254 GTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVY---KPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEW  330 (401)
T ss_dssp             EEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEE---BCCEEEEESSSCCCCCTTCCCCCEEEEEEEEBSSTTCEEEE
T ss_pred             EEEEECcCCHhhCceEEEEEEecccceeEEEEEeec---cCCeEeeccCcceeecCCCccEEEEEEecCCcCCCCcEEEE
Confidence            357788999999999999998865443333444443   4677766544333 35676 79999999886 54  68999


Q ss_pred             E-ECC
Q psy12725        109 Y-LDG  112 (119)
Q Consensus       109 ~-~~~  112 (119)
                      + +++
T Consensus       331 ~~rdg  335 (401)
T 3f8u_B          331 ELRGG  335 (401)
T ss_dssp             EEESS
T ss_pred             EecCC
Confidence            5 765

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.32  E-value=2.6e-12  Score=71.90  Aligned_cols=56  Identities=20%  Similarity=0.298  Sum_probs=47.4

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeCCccCCC-CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~~~~~~~-~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.+.|.|.+.+. |.+.+.|++++..+.. .....|.|.+++.+|.|.|+|.+.|.
T Consensus       102 ~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~  159 (204)
T 3sgj_C          102 EEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVG  159 (204)
T ss_dssp             TTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCcEEEEEEecCCCCCceEEEEECCcEeecccCCceEEECcCCcccCEEEEEEEEeC
Confidence            38899999999655 5678999999987632 34678999999999999999999995

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.32  E-value=6.2e-12  Score=70.18  Aligned_cols=76  Identities=32%  Similarity=0.521  Sum_probs=54.5

Q ss_pred             CCccEEEEEEe-ccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeE-eeEEEeeec
Q psy12725          1 MLALKFFTCKY-EGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS-GELKLGGRF   72 (119)
Q Consensus         1 ~g~~~~l~c~~-~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~-~~~~v~~~~   72 (119)
                      .|+.+.|.|.+ .+.|.+.+.|++++..+...      ....|.|..++.+|.|.|.|.+.|..+..... ..+.+.   
T Consensus       125 ~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~---  201 (212)
T 2v9r_A          125 VGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVL---  201 (212)
T ss_dssp             TTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE---
T ss_pred             CCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEE---
Confidence            38899999998 78899999999999877542      23579999999999999999999986543322 344443   


Q ss_pred             CCCeeee
Q psy12725         73 DPPVIKE   79 (119)
Q Consensus        73 ~~~~~~~   79 (119)
                      .+|.+..
T Consensus       202 ~~P~~~~  208 (212)
T 2v9r_A          202 ERPSFVK  208 (212)
T ss_dssp             C------
T ss_pred             eCchHhh
Confidence            3555443

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.31  E-value=2.1e-11  Score=66.54  Aligned_cols=56  Identities=21%  Similarity=0.255  Sum_probs=48.1

Q ss_pred             CCccEEEEEEec-cCCCCeeEEeeCCccCCC-CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYE-GNPVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~-~~~~~~v~w~~~~~~~~~-~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.+.|.|.+. +.|.+.+.|++++..+.. .....|.|.+++.+|.|.|.|.+.|.
T Consensus        99 ~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~  156 (176)
T 1f2q_A           99 EGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVW  156 (176)
T ss_dssp             TTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCCSSEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCCEEEEEEecCCCCceEEEEEECCEEEeeecCCCeEEECCCCcccCEEEEEEEEeC
Confidence            388999999995 556679999999988754 34678999999999999999999986

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.31  E-value=9.2e-12  Score=72.06  Aligned_cols=105  Identities=10%  Similarity=0.103  Sum_probs=49.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC----------CCCeEEEecCCCCCCeEEEEEEEcCCCC---ceeEeeEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQES---AQASGELK   67 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~---~~~~~~~~   67 (119)
                      .|+.|+|.|.+.+. .+.+.|+|++..+...          ....|.|.+++  |.|.|.|.+.+....   ...+..+.
T Consensus       120 ~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~  196 (257)
T 1b6u_A          120 AGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLL  196 (257)
T ss_dssp             TTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEE
T ss_pred             CCCEEEEEEeCCCC-CcEEEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEE
Confidence            38999999999874 4689999998765321          24678898888  999999999975322   12344455


Q ss_pred             EeeecCCCeeeec-CCccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725         68 LGGRFDPPVIKES-FSDETLNPGPNYYFKCIASGNPTPEISWYL  110 (119)
Q Consensus        68 v~~~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~  110 (119)
                      +.+. .+|.+... +.......|..+.|.|.+ |.+.+.+.|..
T Consensus       197 L~V~-g~p~~~~p~~~~~~~~~g~~~~l~~~~-~~~~~~~~~~~  238 (257)
T 1b6u_A          197 VSVT-GNPSNSWPSPTEPSSETGNPRHLHAAA-EQKLISEEDLN  238 (257)
T ss_dssp             ECCB-CCC------------------------------------
T ss_pred             EEEe-ccCCCCCCCCcccCccCCCeEEEEEEE-cchHHHHHHhh
Confidence            5553 23443321 112234568888999865 55566777764

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.31  E-value=5.5e-12  Score=70.69  Aligned_cols=60  Identities=28%  Similarity=0.528  Sum_probs=50.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC------------CCCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH------------NEPVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...            ....|.|..++.+|.|.|+|.+.|..+..
T Consensus       122 ~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~  193 (212)
T 2yd6_A          122 RTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTR  193 (212)
T ss_dssp             TTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             cCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCcc
Confidence            3789999999999999999999999877542            12678999999999999999999987654

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.31  E-value=4e-12  Score=70.78  Aligned_cols=66  Identities=26%  Similarity=0.526  Sum_probs=53.4

Q ss_pred             CCccEEEEEEe-ccCCCCeeEEeeCCccCCCC----------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeE
Q psy12725          1 MLALKFFTCKY-EGNPVKTISWMKDGKPVPDH----------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS   63 (119)
Q Consensus         1 ~g~~~~l~c~~-~~~~~~~v~w~~~~~~~~~~----------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~   63 (119)
                      .|+.+.|.|.+ .+.|.+.+.|++++..+...                ....|.|.+++.+|.|.|.|.+.|..+....+
T Consensus       121 ~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s  200 (209)
T 1nbq_A          121 IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTS  200 (209)
T ss_dssp             TTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEEC
T ss_pred             cCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCccccc
Confidence            38899999996 88899999999998776431                34689999999999999999999998766334


Q ss_pred             eeE
Q psy12725         64 GEL   66 (119)
Q Consensus        64 ~~~   66 (119)
                      ..+
T Consensus       201 ~~v  203 (209)
T 1nbq_A          201 NAV  203 (209)
T ss_dssp             CCB
T ss_pred             ccE
Confidence            333

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.31  E-value=6.7e-12  Score=75.25  Aligned_cols=67  Identities=16%  Similarity=0.320  Sum_probs=54.0

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCCC----------------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEee
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDHN----------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGE   65 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~----------------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~   65 (119)
                      |+.+.|.|.+.|.|.+.|.|++++..+....                ...|.|..++.+|.|.|+|.+.|..+.....+.
T Consensus       261 g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~  340 (347)
T 2ifg_A          261 MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIM  340 (347)
T ss_dssp             SSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEE
Confidence            7889999999999999999999998775321                234899999999999999999998765544444


Q ss_pred             EEE
Q psy12725         66 LKL   68 (119)
Q Consensus        66 ~~v   68 (119)
                      +.|
T Consensus       341 l~V  343 (347)
T 2ifg_A          341 AAF  343 (347)
T ss_dssp             ECS
T ss_pred             EEe
Confidence            443

>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.98  E-value=1.9e-13  Score=75.50  Aligned_cols=111  Identities=10%  Similarity=0.217  Sum_probs=69.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--cc---C-C--------C-----------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KP---V-P--------D-----------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~---~-~--------~-----------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.+.+.+.+.+.|||..  ..   + .        .           .....|.|.+++.+|+|.|.|.+.+
T Consensus        14 ~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~R~s~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~   93 (185)
T 3c6l_A           14 EGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLHIADSQPGDSATYFCAASD   93 (185)
Confidence            4899999999876655689999843  11   1 0        0           0124689999999999999999875


Q ss_pred             CCCCceeEeeEEEeeec--CCCeeeecCCccccCCCCcEEEEeEEccC-CCCeEEEEECCEEcc
Q psy12725         56 EQESAQASGELKLGGRF--DPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEISWYLDGKKLV  116 (119)
Q Consensus        56 ~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~~~~~~  116 (119)
                      ..........+.|....  .+|.+......     .+.+.|.|.+.+. |.|.+.|+.....+.
T Consensus        94 ~~~~fg~gT~L~V~~~~~~~~P~V~~~~~~-----~~~vtL~C~~~gf~P~p~v~~~~~~~~~~  152 (185)
T 3c6l_A           94 NRIFFGDGTQLVVKPNIQNPEPAVYQLKDP-----RSQDSTLCLFTDFDSQINVPKTMESGTFI  152 (185)
Confidence            21112223344443211  12333322111     2278999999885 778999977655543

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.31  E-value=1.8e-11  Score=69.10  Aligned_cols=69  Identities=26%  Similarity=0.371  Sum_probs=55.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEee----CCccCCCC----------------CCCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMK----DGKPVPDH----------------NEPVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~----~~~~~~~~----------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      .|+.+.|.|.+.+.|.+.+.|++    ++..+...                ....|.|..++..|.|.|+|.+.|..+..
T Consensus       132 ~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  211 (231)
T 3ojm_B          132 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA  211 (231)
T ss_dssp             TTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             eCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceE
Confidence            38899999999999999999999    66554221                23569999999999999999999987766


Q ss_pred             eeEeeEEEe
Q psy12725         61 QASGELKLG   69 (119)
Q Consensus        61 ~~~~~~~v~   69 (119)
                      .....+.+.
T Consensus       212 ~~~~~l~V~  220 (231)
T 3ojm_B          212 NQSAWLTVL  220 (231)
T ss_dssp             EEEEEEEEE
T ss_pred             eeEEEEEEe
Confidence            555666554

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=8.2e-12  Score=62.46  Aligned_cols=54  Identities=19%  Similarity=0.441  Sum_probs=45.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------CCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------EPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.+.|.|.+. .|.+.+.|+|++..+....         ...|.|.+++..|.|.|.|.+.+
T Consensus        25 ~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~   87 (102)
T 2eo1_A           25 AGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG   87 (102)
T ss_dssp             TTCCEEECCBCS-CSSSCCEEEETTEECCCCSSEEEEEETTEEEEEETTCCTTTCSCEEEEETT
T ss_pred             CCCcEEEEEEec-CCCCceEEEECCEECCCCCCEEEEEcCCEEEEEECCCCcccCEEEEEEcCC
Confidence            388999999998 7888999999998775421         24799999999999999999854

>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A

Probab=99.30  E-value=2.7e-11  Score=67.61  Aligned_cols=112  Identities=14%  Similarity=0.231  Sum_probs=70.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC-----------------------CCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP-----------------------DHNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~-----------------------~~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.+.+.....+.|||.  +..+.                       ......|.|.+++.+|+|.|.|.+..
T Consensus        14 ~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~Ca~~~   93 (200)
T 3rgv_A           14 ENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQKTSVQEIDSAVYYCAANS   93 (200)
T ss_dssp             TTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCSTTCEEEEEEEES
T ss_pred             CCCCEEEEEEecCCCCcEEEEEEeCCCCCcEEEEEecCCCCcccCCceEEEECCCCCEEEEEEcCCcCccCCCEEEEecc
Confidence            489999999997655568999983  22110                       01235799999999999999999874


Q ss_pred             CC-CCceeEeeEEEeee--cCCCeeeecCCccccCCCCcEEEEeEEccCCCC-eEEEEECCEEccc
Q psy12725         56 EQ-ESAQASGELKLGGR--FDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVN  117 (119)
Q Consensus        56 ~~-~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~  117 (119)
                      .. ........+.|...  ..+|.+-.....     ...++|.|.+.+..+. .+.|+++|..+..
T Consensus        94 ~~~~~fG~GT~L~V~~~~~~~~P~V~~~~~~-----~~~~tl~Cl~~gf~P~i~v~~~~~g~~~~~  154 (200)
T 3rgv_A           94 GTYQRFGTGTKLQVVPNIQNPDPAVYQLRDS-----KSSDKSVCLFTDFDSQTNVSQSKDSDVYIT  154 (200)
T ss_dssp             SSCCCCCCCEEEEEECCCSSCCCEEEEEEES-----SSSSCEEEEEESCCTTCCCCCCSSTTCEEC
T ss_pred             CcccccCcCEEEEEeCCCCCCCCeEEEccCC-----CCCceEEEEcccccCCeEeEeccCCcEEee
Confidence            21 11223345555432  122333221111     1336799999887444 6899998876643

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.30  E-value=3.4e-11  Score=65.99  Aligned_cols=68  Identities=24%  Similarity=0.417  Sum_probs=52.4

Q ss_pred             CCccEEEEEEeccCC-CCeeEEee---CCcc-CCCC-----------CCCeEEEecCC-CCCCeEEEEEEEcCCCCceeE
Q psy12725          1 MLALKFFTCKYEGNP-VKTISWMK---DGKP-VPDH-----------NEPVFRIDSVR-KEDKGMYQCVIRNEQESAQAS   63 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~-~~~v~w~~---~~~~-~~~~-----------~~~~l~~~~~~-~~d~g~y~C~~~~~~~~~~~~   63 (119)
                      .|+.+.|.|.+.+.| .+.+.|++   ++.. +...           ....|.|..++ ..|.|.|.|.+.|..+.....
T Consensus        97 ~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~  176 (184)
T 3b5h_A           97 EGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAI  176 (184)
T ss_dssp             TTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEE
T ss_pred             CCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEE
Confidence            388999999999988 79999999   4433 3221           12379999999 899999999999988766555


Q ss_pred             eeEEE
Q psy12725         64 GELKL   68 (119)
Q Consensus        64 ~~~~v   68 (119)
                      ..+.|
T Consensus       177 ~~l~V  181 (184)
T 3b5h_A          177 ITLRV  181 (184)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55544

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.29  E-value=2.3e-11  Score=69.00  Aligned_cols=108  Identities=17%  Similarity=0.242  Sum_probs=67.5

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeCC--ccC-------C----------C-----------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKDG--KPV-------P----------D-----------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~~--~~~-------~----------~-----------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.|+|.|.+.+.  +...+.|||..  ...       .          .           .....|.|.+++.+|+|.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~   93 (226)
T 3mlr_H           14 PGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQASDTGK   93 (226)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCGGGCEE
T ss_pred             cCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCcccCEE
Confidence            48999999999653  34679999732  110       0          0           012349999999999999


Q ss_pred             EEEEEEcCCC---------CceeEeeEEEeee-cCCCeeeecCCccccCCCCcEEEEeEEccC-C-CCeEEE
Q psy12725         49 YQCVIRNEQE---------SAQASGELKLGGR-FDPPVIKESFSDETLNPGPNYYFKCIASGN-P-TPEISW  108 (119)
Q Consensus        49 y~C~~~~~~~---------~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~~~W  108 (119)
                      |.|.+.+...         .......+.+... ..+|.+...+.......|..+.|.|.+.+. | .+.+.|
T Consensus        94 Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W  165 (226)
T 3mlr_H           94 YFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW  165 (226)
T ss_dssp             EEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE
Confidence            9999875420         0111223444221 134555433333345688999999998775 4 347999

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.29  E-value=2e-11  Score=70.88  Aligned_cols=108  Identities=13%  Similarity=0.310  Sum_probs=66.2

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeCC--ccC-------C------------C---------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKDG--KPV-------P------------D---------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~~--~~~-------~------------~---------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.|+|.|.+.+.  ....+.|||..  ...       .            .         ....+|.|.+++.+|+|.
T Consensus        37 ~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~  116 (267)
T 3u1s_H           37 PGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLTADDTAI  116 (267)
T ss_dssp             TTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCCGGGCEE
T ss_pred             CCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCChhhCEE
Confidence            48999999999652  34678998732  110       0            0         012359999999999999


Q ss_pred             EEEEEEc-------CC------------C------CceeEeeEEEe-eecCCCeeeecCCccccCCCCcEEEEeEEccC-
Q psy12725         49 YQCVIRN-------EQ------------E------SAQASGELKLG-GRFDPPVIKESFSDETLNPGPNYYFKCIASGN-  101 (119)
Q Consensus        49 y~C~~~~-------~~------------~------~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-  101 (119)
                      |.|.+.+       ..            .      .......+.|. ....+|.+...........|+.+.|.|.+.+. 
T Consensus       117 Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~~~~  196 (267)
T 3u1s_H          117 YYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYF  196 (267)
T ss_dssp             EEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGGEETTEEEEEEEEEEEB
T ss_pred             EEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcccCCCCcEEEEEEEeEEE
Confidence            9999862       10            0      01112234443 11234555533333334578999999998774 


Q ss_pred             C-CCeEEE
Q psy12725        102 P-TPEISW  108 (119)
Q Consensus       102 p-~~~~~W  108 (119)
                      | .+.+.|
T Consensus       197 p~~~~v~W  204 (267)
T 3u1s_H          197 PEPVTVSW  204 (267)
T ss_dssp             SSCCEEEE
T ss_pred             CCCeEEEE
Confidence            4 347999

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.29  E-value=5.6e-12  Score=72.06  Aligned_cols=59  Identities=14%  Similarity=0.180  Sum_probs=49.5

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC------------------------------CCCeEEEecCCCCCCeEEEE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH------------------------------NEPVFRIDSVRKEDKGMYQC   51 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~------------------------------~~~~l~~~~~~~~d~g~y~C   51 (119)
                      |+.+.|.|.+.+.|.+.+.|++++..+...                              ....|.|.+++.+|.|.|.|
T Consensus       151 g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C  230 (250)
T 2fbo_J          151 GNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWC  230 (250)
T ss_dssp             TCCEEECCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEE
T ss_pred             CCcEEEEEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEE
Confidence            899999999999888899999987655321                              23689999999999999999


Q ss_pred             EEEcCCCCc
Q psy12725         52 VIRNEQESA   60 (119)
Q Consensus        52 ~~~~~~~~~   60 (119)
                      .+.|..+..
T Consensus       231 ~a~N~~g~~  239 (250)
T 2fbo_J          231 ELATGQGEL  239 (250)
T ss_dssp             EEESSSSGG
T ss_pred             EecCCcccc
Confidence            999976543

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.29  E-value=4.8e-11  Score=67.98  Aligned_cols=107  Identities=17%  Similarity=0.273  Sum_probs=66.8

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--ccCC------------CC-----------CCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KPVP------------DH-----------NEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~~~------------~~-----------~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      +|+.|+|.|.+.+.+  ...+.|||..  ..+.            ..           ....|.|.+++.+|+|.|.|.+
T Consensus        15 ~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~   94 (229)
T 1hxm_A           15 IGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSYYCAC   94 (229)
T ss_dssp             TTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhHCeEEEEEE
Confidence            489999999997544  4579999842  1110            00           1236899999999999999999


Q ss_pred             EcCCC------C--ceeEeeEEEeee---cCCCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEEcc
Q psy12725         54 RNEQE------S--AQASGELKLGGR---FDPPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLV  116 (119)
Q Consensus        54 ~~~~~------~--~~~~~~~~v~~~---~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~  116 (119)
                      .+...      .  ......+.|...   ..+|.+....        ....|.|.+.+. |.+ .+.|+++ ..+.
T Consensus        95 ~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~~~--------~~~~L~C~~~g~~P~~i~v~W~~~-~~~~  161 (229)
T 1hxm_A           95 DTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFVMK--------NGTNVACLVKEFYPKDIRINLVSS-KKIT  161 (229)
T ss_dssp             ECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEEEE--------ETTEEEEEEESCBSSCCEEEEECS-SEEE
T ss_pred             ecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEEcC--------CCCeEEEEEEEEeCCCEEEEEecC-CEEe
Confidence            87531      1  112234444321   1133333211        124899999876 444 7999998 5553

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.29  E-value=1.1e-11  Score=68.22  Aligned_cols=60  Identities=32%  Similarity=0.619  Sum_probs=50.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...      ....|.|..++..|.|.|.|.+.|..+..
T Consensus       114 ~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  179 (192)
T 2iep_A          114 EGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA  179 (192)
T ss_dssp             TTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCChhhCEEEEEEEEcCCCcE
Confidence            3789999999999898999999998876542      34579999999999999999999986544

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.29  E-value=1.3e-11  Score=69.10  Aligned_cols=61  Identities=20%  Similarity=0.245  Sum_probs=44.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC----------CCCCe---EEEecCCCCCCeEEEEEEEcCCCCce
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD----------HNEPV---FRIDSVRKEDKGMYQCVIRNEQESAQ   61 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~----------~~~~~---l~~~~~~~~d~g~y~C~~~~~~~~~~   61 (119)
                      .|+.+.|.|.+.|.|.|.|.|++++..+..          ..+..   +.+..++.+|.|.|+|.+.|..+...
T Consensus       120 ~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~  193 (203)
T 4fa8_A          120 DFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH  193 (203)
T ss_dssp             CSCCEEEEEEEEEESCCEEEECCC------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEE
T ss_pred             CCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEE
Confidence            388999999999999999999986543321          12233   34568899999999999999987654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.28  E-value=9.9e-12  Score=77.31  Aligned_cols=68  Identities=19%  Similarity=0.438  Sum_probs=54.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC---------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.|.|.|.+.|++++..+..         .....+.|..++.+|.|.|+|.+.+..+.......+.|
T Consensus       399 ~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V  475 (477)
T 2id5_A          399 EGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV  475 (477)
T ss_dssp             TTCCEEECCCEEEESCCEEEEECTTSCBC-------CEECTTSCEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCeEEEEEeccccCCCEEEEEECCccccccCCCceEEeCCCCEEEEeeCChHHCEEEEEEEEeCCCcEEEEEEEEE
Confidence            489999999999999999999998866532         12467999999999999999999998766555555444

>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}

Probab=99.28  E-value=3.7e-11  Score=68.29  Aligned_cols=111  Identities=13%  Similarity=0.266  Sum_probs=70.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC---------------------CCCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP---------------------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~---------------------~~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.|+|.|.+.+. ...+.|||.  +..+.                     ......|.|.+++.+|+|.|.|.+....
T Consensus        15 ~G~sVtL~C~~s~~-~~~v~Wyrq~pg~~~~~l~~~~~~~~~~~Rfs~~~~~~~~~~sLtI~~lq~~DSG~Y~Ca~~~~~   93 (229)
T 3mbe_C           15 EGADSGLRCNFSTT-MKSVQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNSKERYSTLHIKDAQLEDSGTYFCAAEDGG   93 (229)
T ss_dssp             TTCCEEEEEEESSC-CSCEEEEEECSSSCBCCCEEESSEEEEETTEEEEEETTTTEEEEEECSCCSTTCBEEEEEEECSS
T ss_pred             cCCCEEEEEEEeCC-CcEEEEEEECCCCCcEEEEEeCCCCccCCCEEEEECCCCCEEEEEEECCcccCCCCEEEEEEeCC
Confidence            48999999999876 568999983  22211                     0123469999999999999999998532


Q ss_pred             --C--CceeEeeEEEeeec--CCCeeeecCCccccCCCCcEEEEeEEccCCCC-eEEEEECCEEccc
Q psy12725         58 --E--SAQASGELKLGGRF--DPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVN  117 (119)
Q Consensus        58 --~--~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~  117 (119)
                        .  .......+.|....  .+|.+-....     ....+++.|.+.+..+. .+.|++++..+..
T Consensus        94 ~~~~~~fG~GT~L~V~~~~~~p~P~Vf~~~~-----~~~~vtl~Cl~~gf~P~i~v~~~~~~~~~~~  155 (229)
T 3mbe_C           94 SGNKLIFGTGTLLSVKPNIQNPEPAVYQLKD-----PRSQDSTLCLFTDFDSQINVPKTMESGTFIT  155 (229)
T ss_dssp             STTCEEECCCCEEEEECCCSSCCCEEEEEEC-----TTCTTCEEEEEESCCSSSCCCCCCSSSEEEC
T ss_pred             CcccceeCCCEEEEEecccCCCCCEEEEccC-----CCCCEEEEEEccccCCceEeEeeccCceEec
Confidence              1  11223345554321  1233222111     11348899999887444 7899988876643

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.28  E-value=7.8e-12  Score=69.78  Aligned_cols=69  Identities=16%  Similarity=0.202  Sum_probs=55.6

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC----------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEee
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG   70 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~   70 (119)
                      |+.+.+.|.+.+.|.+.|.|++++..+...          ..+.|.|..+...|.|.|+|.+.|..+.......+.+.+
T Consensus       133 ~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V  211 (218)
T 4frw_A          133 GLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHV  211 (218)
T ss_dssp             CSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCE
T ss_pred             ccccceeeeccCCcCceEEEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEE
Confidence            678899999999999999999988655321          124688989999999999999999988776666666654

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.28  E-value=1.4e-11  Score=71.13  Aligned_cols=89  Identities=18%  Similarity=0.268  Sum_probs=51.5

Q ss_pred             CCccEEEEEEe---ccCCCCeeEEeeCCcc-CC--------------------------------CCCCCeEEEecCCCC
Q psy12725          1 MLALKFFTCKY---EGNPVKTISWMKDGKP-VP--------------------------------DHNEPVFRIDSVRKE   44 (119)
Q Consensus         1 ~g~~~~l~c~~---~~~~~~~v~w~~~~~~-~~--------------------------------~~~~~~l~~~~~~~~   44 (119)
                      .|+.+.|.|.+   .+.|.+.+.|++++.. ..                                ......|.|.+++.+
T Consensus       132 ~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~  211 (268)
T 3mj6_A          132 VGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKES  211 (268)
T ss_dssp             TTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGG
T ss_pred             cCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChh
Confidence            48899999999   5668889999984221 00                                023568999999999


Q ss_pred             CCeEEEEEEEcCCCCceeEeeEEEeeecCCCeeeecCCccccCCCCc
Q psy12725         45 DKGMYQCVIRNEQESAQASGELKLGGRFDPPVIKESFSDETLNPGPN   91 (119)
Q Consensus        45 d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~   91 (119)
                      |.|.|+|.+.|..+.......+.+.  ..+|.+...+....+..++.
T Consensus       212 D~G~Y~C~a~n~~g~~~~~~~l~V~--~~~p~~~~~p~~~~~~~~q~  256 (268)
T 3mj6_A          212 DQGIYTCSIYVGKLESRKTIVLHVV--QDEFQRTISPTPPTDKGQQG  256 (268)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEE--CC------------------
T ss_pred             hCeEEEEEEEcCCceEEEEEEEEEE--cCCCeeeeCCCCCCCCccee
Confidence            9999999999976554444555543  34565555554444444443

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.28  E-value=3.9e-11  Score=65.57  Aligned_cols=58  Identities=22%  Similarity=0.382  Sum_probs=48.0

Q ss_pred             CCccEEEEEEeccCCCC-eeEEeeCCccCCCC--CCCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          1 MLALKFFTCKYEGNPVK-TISWMKDGKPVPDH--NEPVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~-~v~w~~~~~~~~~~--~~~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      .|+.+.|.|.+.+.|.+ .+.|++++..+...  ....|.+.++  .|.|.|.|.+.|..+..
T Consensus       112 ~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~  172 (182)
T 1rhf_A          112 PNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGV--TQSTMFSCEAHNLKGLA  172 (182)
T ss_dssp             TTCCEEEEEEEECSSSCCEEEEEETTEECSCSEESSEEEEECCC--SSCEEEEEEEEETTEEE
T ss_pred             CCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCCCceEEEEecc--ccCeEEEEEEECCCCCc
Confidence            48899999999999988 99999999887543  4567777776  58899999999986544

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.27  E-value=4.3e-10  Score=66.18  Aligned_cols=112  Identities=15%  Similarity=0.177  Sum_probs=69.8

Q ss_pred             CCccEEEEEEeccCCCCe-eEEeeC-CccCC-CC--CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCC
Q psy12725          1 MLALKFFTCKYEGNPVKT-ISWMKD-GKPVP-DH--NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPP   75 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~-v~w~~~-~~~~~-~~--~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~   75 (119)
                      .|+.+.|.|.+.- +.+. +.|... ++... ..  ....+.+.+++..  +.|.|.+..........+.+.+.  ..|.
T Consensus        13 ~G~sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~g~~~~~~~l~~v~~~--~~y~C~~~~~~~~~~~~v~l~V~--~~P~   87 (291)
T 1mq8_A           13 RGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLPGNNRKVYELSNVQED--SQPMCYSNCPDGQSTAKTFLTVY--WTPE   87 (291)
T ss_dssp             TTCEEEEEEEECC-SSCSEEEEECSSCCCCCCCSCSSEEEEEEESCCSC--CCCEEEEECSSCEEEEECEEEEC--BCCS
T ss_pred             CCCeEEEEEeCCC-CCCccceEEecCCCcccccCCCceEEEEEEecccC--CeEEEEEEcCCccEEEEEEEEEe--cCCC
Confidence            4999999999964 5444 888532 11111 11  1224677776643  46999997654333334444443  3333


Q ss_pred             eeeecCCccccCCCCcEEEEeEEccC-CCC--eEEEEECCEEccc
Q psy12725         76 VIKESFSDETLNPGPNYYFKCIASGN-PTP--EISWYLDGKKLVN  117 (119)
Q Consensus        76 ~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~--~~~W~~~~~~~~~  117 (119)
                      .+.+.+....+.+|+.++|.|.+.+. |..  .+.|+|+++.+..
T Consensus        88 ~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~  132 (291)
T 1mq8_A           88 RVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKR  132 (291)
T ss_dssp             CCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEE
T ss_pred             CCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeec
Confidence            34443334458899999999998776 433  5899999987753

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.26  E-value=1.8e-11  Score=75.56  Aligned_cols=69  Identities=20%  Similarity=0.467  Sum_probs=54.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCcc-CCC---------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKP-VPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG   70 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~-~~~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~   70 (119)
                      .|+.++|.|.+ +.|.+.+.|++++.. +..         ....+|.|.+++.+|.|.|+|.+.|..+.......+.+..
T Consensus       355 ~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~v~~  433 (440)
T 3zyj_A          355 EGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG  433 (440)
T ss_dssp             TTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCCSSEEECTTCCEEESSCCSTTCEEEEEEEECSSCEEEEEEEEEEC-
T ss_pred             cCceEEEEeec-CCCCCceEEEeCCCceeeccCCCceEEEccCCeEEEccCChhhCEEEEEEEEcCCCcEEEEEEEEEec
Confidence            48999999999 568899999985432 211         1246799999999999999999999988877777777754

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.26  E-value=5.6e-11  Score=77.42  Aligned_cols=111  Identities=19%  Similarity=0.309  Sum_probs=75.4

Q ss_pred             ccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCC-CeEEEEEEEcCCCCceeEeeEEEee--ecCCCeeee
Q psy12725          3 ALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKED-KGMYQCVIRNEQESAQASGELKLGG--RFDPPVIKE   79 (119)
Q Consensus         3 ~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d-~g~y~C~~~~~~~~~~~~~~~~v~~--~~~~~~~~~   79 (119)
                      ..+.+.|.+.|.|.+.+.|.+++..........+.+..+...+ .+.|.|.+.+..+.... ..+.+..  ...+|.+. 
T Consensus        92 g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~-~~v~~~~~~~~~~p~~~-  169 (731)
T 2v5y_A           92 GLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAI-DEVKVLGHPCTRTPHFL-  169 (731)
T ss_dssp             EEEEEEEEETTCCCCSEEEEECCCCCSSCEEEEEEECCCTTSCEEEEEEEEECSSCCEEEE-CCBEEESSCCSSSCEEC-
T ss_pred             ceEEEEEecCCCCccceeEEEeCCcCCceeEEEEEEeecCCCceEEEEEEEecCCceEEEE-eeEEeeecccccccccc-
Confidence            4788999999999999999999987644334445555442333 37889977666554332 2222221  11356665 


Q ss_pred             cCCccccCCCCcEEEEeEEccCCCCeEE-EE--ECCEEc
Q psy12725         80 SFSDETLNPGPNYYFKCIASGNPTPEIS-WY--LDGKKL  115 (119)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~-W~--~~~~~~  115 (119)
                      .+....+..|+.+.|.|.+.|.|.|.+. |+  ++|..+
T Consensus       170 ~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l  208 (731)
T 2v5y_A          170 RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDA  208 (731)
T ss_dssp             CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCE
T ss_pred             cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccc
Confidence            3445678899999999999999998876 88  677654

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.26  E-value=1.8e-11  Score=68.75  Aligned_cols=69  Identities=14%  Similarity=0.262  Sum_probs=52.2

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCCccCCCC-----------------CCCeEEEecCCCCCCeEEEEEEEcCCCCce
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDGKPVPDH-----------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ   61 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~~~~~~~-----------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~   61 (119)
                      .|+.++|.|.+.+.|  .+.+.|++++..+...                 ....|.|.+++.+|.|.|+|.+.|..+...
T Consensus       119 ~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~  198 (213)
T 2x1w_L          119 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK  198 (213)
T ss_dssp             TTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             CCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEE
Confidence            489999999998754  3479999988653210                 023489999999999999999999887665


Q ss_pred             eEeeEEEe
Q psy12725         62 ASGELKLG   69 (119)
Q Consensus        62 ~~~~~~v~   69 (119)
                      ....+.|.
T Consensus       199 ~~~~l~V~  206 (213)
T 2x1w_L          199 NSTFVRVH  206 (213)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            55555553

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=99.26  E-value=2.2e-11  Score=61.72  Aligned_cols=57  Identities=21%  Similarity=0.343  Sum_probs=43.5

Q ss_pred             CCccEEEEEEeccCCCC-----eeEEeeCCccCCC-CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVK-----TISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~-----~v~w~~~~~~~~~-~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.|+|.|.....+..     .+.|+|++..+.. .....+.|..++..|.|.|.|.+.+..
T Consensus        21 ~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~~~~~~~l~i~~v~~~dsG~Y~C~~~~~~   83 (108)
T 4hwn_A           21 AGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQSRGLSSEFQIPTASEDHSGSYWCEAATED   83 (108)
T ss_dssp             TTCCEEEEEEC---------CCEEEEEETTEEEEEEESCCEEEESSCCGGGCEEEEEEEECTT
T ss_pred             CCCcEEEEEcccCCCCCcCcceEEEEEECCcCccCCCcccEEEeCccCcccCeEEEEEEEeCC
Confidence            38999999999764433     4999999987642 346789999999999999999999864

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=99.26  E-value=2e-11  Score=61.56  Aligned_cols=55  Identities=16%  Similarity=0.253  Sum_probs=44.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCC------CCCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVP------DHNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~------~~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|...+. ...+.|||++..+.      ......|.|..++.+|.|.|.|.+.+.
T Consensus        18 ~G~~VtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~l~I~~v~~~dsG~Y~C~~~n~   78 (105)
T 2vsd_A           18 LGDTVTLRCHLPRM-AAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQCRYQVS   78 (105)
T ss_dssp             TTCEEEEEEECCSS-CEEEEEEETTEEEEEEEECTTCSEEEEEEECCSGGGCEEEEEEEEEE
T ss_pred             cCCCEEEEEEcCCC-CcEEEEEECCccceeeeccCCCCEEEEEECCCCHHHCeEEEEEEEcC
Confidence            38999999999764 45788999986542      234567999999999999999999875

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.25  E-value=4.8e-11  Score=66.48  Aligned_cols=68  Identities=29%  Similarity=0.507  Sum_probs=54.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG   70 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~   70 (119)
                      .|+.+.|.|.+.+.| +.+.|++++..+...       ....|.|..++..|.|.|+|.+.|..+... +..+.+.+
T Consensus       124 ~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~-s~~~~l~v  198 (208)
T 3r4d_A          124 ELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRR-SNSIKLDI  198 (208)
T ss_dssp             TTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEE-CCCEEECC
T ss_pred             eCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCccc-CCceeeeE
Confidence            388999999998865 799999999877532       347899999999999999999999876643 44455443

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.25  E-value=1.4e-11  Score=67.23  Aligned_cols=57  Identities=19%  Similarity=0.302  Sum_probs=48.1

Q ss_pred             CCccEEEEEEeccCCC-CeeEEeeCCccCCC-CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPV-KTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~-~~v~w~~~~~~~~~-~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.+.|.|.+.+.+. +.+.|++++..+.. .....|.|.+++.+|.|.|.|.+.|..
T Consensus       102 ~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  160 (175)
T 1fnl_A          102 EEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGS  160 (175)
T ss_dssp             TTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCCEEEEEEcCCCCCceEEEEEECCeEccCCCCCCEEEEcccChhhCeEEEEEEEcCC
Confidence            3889999999987654 49999999987643 246789999999999999999999964

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.25  E-value=2e-11  Score=66.11  Aligned_cols=58  Identities=19%  Similarity=0.375  Sum_probs=48.6

Q ss_pred             CCccEEEEEEec-cCCCCeeEEeeCCccCCC-CCCCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          1 MLALKFFTCKYE-GNPVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         1 ~g~~~~l~c~~~-~~~~~~v~w~~~~~~~~~-~~~~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      .|+.+.|.|.+. +.|.+.+.|++++..+.. .....|.|..++..|.|.|.|.+.|..+
T Consensus        99 ~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  158 (170)
T 3ry4_A           99 EGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYT  158 (170)
T ss_dssp             TTCCEEEEEEEGGGCCEEEEEEEETTEEEEEESSCCEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cCCeEEEEEECCCCCCCceEEEEECCeEccccCCCCeEEEEeccccCCEEEEEEEEeCcC
Confidence            388999999994 446689999999987643 3467899999999999999999999764

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.25  E-value=5.1e-12  Score=69.71  Aligned_cols=55  Identities=27%  Similarity=0.508  Sum_probs=47.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC--CCCCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD--HNEPVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~--~~~~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      .|+.+.|.|.+   |.+.+.|+|++..+..  .....|.|..+..+|.|.|+|.+.|..+
T Consensus       121 ~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g  177 (186)
T 1jbj_A          121 GDGSVLLTCGL---TDKTIKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGAKETS  177 (186)
T ss_dssp             SSCEEEEECSS---SCSCEEEEETTEECCCSSCCSSCCEEEETTSCCEEEEEEEESSCEE
T ss_pred             CCCeEEEEeeC---CCCeEEEEECCEECcccCCCcceEEECCCCcCcCEEEEEEEEcCcC
Confidence            37899999988   7789999999998753  3567899999999999999999998754

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.25  E-value=1.4e-11  Score=69.16  Aligned_cols=64  Identities=28%  Similarity=0.507  Sum_probs=52.5

Q ss_pred             CCccEEEEEEe-ccCCCCeeEEeeCCccCCCC--------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEe
Q psy12725          1 MLALKFFTCKY-EGNPVKTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG   64 (119)
Q Consensus         1 ~g~~~~l~c~~-~~~~~~~v~w~~~~~~~~~~--------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~   64 (119)
                      .|+.+.|.|.+ .+.|.+.+.|++++..+...              ....|.|..++.+|.|.|.|.+.|..+......
T Consensus       122 ~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~  200 (217)
T 2vr9_A          122 KGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSY  200 (217)
T ss_dssp             TTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCC
T ss_pred             CCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceecccc
Confidence            38899999998 78899999999998876521              235799999999999999999999876554443

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.24  E-value=5.1e-12  Score=70.72  Aligned_cols=56  Identities=21%  Similarity=0.431  Sum_probs=47.6

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC--------CCCeEEEecC-CCCCCeEEEEEEEcCCCC
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSV-RKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~-~~~d~g~y~C~~~~~~~~   59 (119)
                      |+.+.|.|.  +.|.+.+.|++++..+...        ....|.|.++ +..|.|.|+|.+.|..+.
T Consensus       128 G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~  192 (204)
T 1sy6_A          128 GTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPE  192 (204)
T ss_dssp             TTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGG
T ss_pred             CCcEEEEcC--CCCCCceEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCC
Confidence            889999998  6788899999999876432        2568999999 999999999999998764

>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...

Probab=99.24  E-value=2.9e-11  Score=67.83  Aligned_cols=112  Identities=9%  Similarity=0.139  Sum_probs=68.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccCC----------------------CCCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPVP----------------------DHNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~~----------------------~~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|.+.+.....+.|||..  +.+.                      ......|.|.+++.+|+|.|.|.+...
T Consensus        16 ~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~lq~~DsG~Y~Ca~~~~   95 (208)
T 4ei6_A           16 EGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKASLHVSLHIRDSQPSDSALYFCAASEQ   95 (208)
T ss_dssp             TTCCEECEEEECCTTEEEEEEEEECTTSCCEEEEECCSSEEEEETTEEEEEBTTTTBC-CEECSCCGGGCEEEEEEEEEC
T ss_pred             CCCCEEEEEEEcCCCCceEEEEEeCCCCCcEEEEEECCCCcccCCcEEEEEcCCCCEEEEEEEeCcccCCCcEEEEEecC
Confidence            4899999999986544578999732  1110                      112357899999999999999998743


Q ss_pred             C-----CCceeEeeEEEeee--cCCCeeeecCCccccCCCCcEEEEeEEccCCCC-eEEEEECCEEccc
Q psy12725         57 Q-----ESAQASGELKLGGR--FDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVN  117 (119)
Q Consensus        57 ~-----~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~  117 (119)
                      .     ........+.|...  ..+|.+-.....   .  ..++|.|.+.+.++. .+.|.++|..+..
T Consensus        96 ~~~~~~~~fG~GT~L~V~~~~~~~~PsVf~l~~~---~--~~~tl~Cl~~~f~P~i~v~~~~~~~~~~~  159 (208)
T 4ei6_A           96 NNYAQGLTFGLGTRVSVFPYIQNPDPAVYQLRDS---K--SSDKSVCLFTDFDSQTNVSQSKDSDVYIT  159 (208)
T ss_dssp             CSSCCCCEECCCEEEEEECCCSSCCCEEEEEEBS---S--CTTCEEEEEESCCTTCCCCCCSSTTCEEC
T ss_pred             CCccccccCCCCEEEEEeCcccCCCCEEEEcccC---C--CCceEEEEeeccCCceEeeecccCcEEEe
Confidence            1     11223345555432  122333221111   1  225788999887544 6899988765543

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.23  E-value=1.1e-10  Score=65.36  Aligned_cols=68  Identities=13%  Similarity=0.286  Sum_probs=49.4

Q ss_pred             CCccEEEEEEeccC----CCCeeEEeeCCccCCC---CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGN----PVKTISWMKDGKPVPD---HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~----~~~~v~w~~~~~~~~~---~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.++|.|.+.+.    |.+.+.|++++.....   .....|.|..+...|.|.|+|.+.|..+.......+.+
T Consensus       137 ~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l  211 (214)
T 2zg1_A          137 SGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL  211 (214)
T ss_dssp             TTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSCSSCCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEEC
T ss_pred             CCCeEEEEEEeccCCCCCCCceEEEeCCCCccCCCCceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEE
Confidence            38899999999764    7789999998865422   24578999989889999999999997544333444443

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}

Probab=99.23  E-value=2.2e-10  Score=72.66  Aligned_cols=114  Identities=12%  Similarity=0.133  Sum_probs=73.3

Q ss_pred             CccEEEEEEeccCCC----CeeEEeeCCccCCCC--------CC------CeEEEecCCCCCCeEEEEEEEcCCCCcee-
Q psy12725          2 LALKFFTCKYEGNPV----KTISWMKDGKPVPDH--------NE------PVFRIDSVRKEDKGMYQCVIRNEQESAQA-   62 (119)
Q Consensus         2 g~~~~l~c~~~~~~~----~~v~w~~~~~~~~~~--------~~------~~l~~~~~~~~d~g~y~C~~~~~~~~~~~-   62 (119)
                      +..+.|.|.+.+...    ..|+|++++..+...        .+      +.|.+......|.+.|+|.+.+....... 
T Consensus       358 ~~~~~l~C~~~~~~p~~~~i~v~W~~~~~~~~~~~t~~~~~~~n~~~~~~s~L~i~~~~~~~~~~y~C~v~~~~~~~~~~  437 (551)
T 1ntl_A          358 TLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIE  437 (551)
T ss_pred             ccCcceEEEEEecccCCCceEEEEEECCccccccccCCceECCCCeEEEEEeeEcCHHHccCCceEEEEEecCCCCCCeE
Confidence            567789999987643    479999988654311        11      23444444555678899999987543222 


Q ss_pred             -EeeEEEeeecCCCeeeecCCccccCCCCcEEEEeEEccCCCC--eEEEEECCEEcc
Q psy12725         63 -SGELKLGGRFDPPVIKESFSDETLNPGPNYYFKCIASGNPTP--EISWYLDGKKLV  116 (119)
Q Consensus        63 -~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~  116 (119)
                       .+.+.+.. ..+|.+...+.......|+.+.|.|.+.+..++  .+.|++||..+.
T Consensus       438 ~~~~~~~~~-~~~P~V~~~~~~~~~~~~~~~~L~C~v~gfyP~~i~v~W~k~g~~~~  493 (551)
T 1ntl_A          438 KTISKTKGR-PKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAE  493 (551)
T ss_pred             EEEecCCCC-CcCCceEEeCCChhhccCCceEEEEEEEEeECCCCEEEEEECCEEcc
Confidence             22223222 235665544433334578899999999886433  799999998764

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.22  E-value=3.6e-10  Score=62.49  Aligned_cols=112  Identities=7%  Similarity=0.105  Sum_probs=73.3

Q ss_pred             CCccEEEEEEeccCCCCe-eEEeeC--CccCCC-CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEeeecCCCe
Q psy12725          1 MLALKFFTCKYEGNPVKT-ISWMKD--GKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPV   76 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~-v~w~~~--~~~~~~-~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~~~~   76 (119)
                      +|+++.|.|...- +.+. +.|...  ...+.. .....+.+.+++  ++|.|.|.+............+++..  .|..
T Consensus        16 ~G~S~~l~Cs~~c-~~p~~~glet~l~~~~~~~g~~w~~l~l~~vs--~~g~~~C~~~c~~~~~~~~~~itVy~--~P~~   90 (192)
T 1zxq_A           16 PKGSLEVNCSTTC-NQPEVGGLETSLNKILLDEQAQWKHYLVSNIS--HDTVLQCHFTCSGKQESMNSNVSVYQ--PPRQ   90 (192)
T ss_dssp             TTEEEEEEEEESC-SSCSEEEEECSSEEEEEEEETTEEEEEEEEEC--SCEEEEEEEEETTEEEEEEEEEEECB--CCCC
T ss_pred             CCCcEEEEEECCC-CCccccccccccCceEEcCCCCeEEEEEeccc--cCCeeEEEEECCCcceEEEEEEEEEe--CCCC
Confidence            5899999999964 4443 555421  111111 133568888888  78899999987644455556666532  2333


Q ss_pred             eeecCCccccCCCCcEEEEeEEccC-CCC--eEEEEECCEEccc
Q psy12725         77 IKESFSDETLNPGPNYYFKCIASGN-PTP--EISWYLDGKKLVN  117 (119)
Q Consensus        77 ~~~~~~~~~~~~g~~~~l~C~~~~~-p~~--~~~W~~~~~~~~~  117 (119)
                      +.+.+....+..|+.++|.|.+.+. |..  .+.|++++..+..
T Consensus        91 v~i~~~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~~  134 (192)
T 1zxq_A           91 VILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHY  134 (192)
T ss_dssp             CEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEE
T ss_pred             ceEccCCccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEeee
Confidence            3333333468899999999999765 544  4899999888753

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.22  E-value=4.9e-12  Score=69.27  Aligned_cols=59  Identities=7%  Similarity=0.091  Sum_probs=46.8

Q ss_pred             ccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeE
Q psy12725          3 ALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS   63 (119)
Q Consensus         3 ~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~   63 (119)
                      ..+.|.|.+.+.|.+.|.|++++..+.....  +.+..++..|.|.|.|.+.|..+.....
T Consensus       111 ~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~--~~i~~~~~~d~G~Y~C~a~N~~g~~~~~  169 (176)
T 1hng_A          111 SNATLTCEVLEGTDVELKLYQGKEHLRSLRQ--KTMSYQWTNLRAPFKCKAVNRVSQESEM  169 (176)
T ss_dssp             TTTEEEEECSSCSSCEEEEEETTEEEEEESS--SEEEEECSCCSSCEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEecCCCCcEEEEEECCEECCCCCc--EEEEEEEccCCeEEEEEEEecCCCceec
Confidence            3578999999999999999999988754333  4455778999999999999987654433

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.22  E-value=1.1e-10  Score=64.73  Aligned_cols=57  Identities=12%  Similarity=0.243  Sum_probs=44.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----------CCCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----------NEPVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----------~~~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      .|+.++|.|.+.+. .+.+.|+|++..+...           ....|.|.+++.+|.|.|.|.+.|...
T Consensus       114 ~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          114 SGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             TTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             CCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence            48899999999887 6899999998765311           136899999999999999999999754

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=3.5e-10  Score=57.58  Aligned_cols=64  Identities=14%  Similarity=0.222  Sum_probs=48.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC----------C---------CeEEEecCCCCCCeEEEEEEEcCCCCce
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN----------E---------PVFRIDSVRKEDKGMYQCVIRNEQESAQ   61 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~----------~---------~~l~~~~~~~~d~g~y~C~~~~~~~~~~   61 (119)
                      .|+.+.|.|.+.+  .+.+.|+||++.+....          +         ..|.|.+++.+|+|.|+|...+.   ..
T Consensus        22 eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~Y~~~~~~~---~~   96 (112)
T 2e6q_A           22 DGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPG---VQ   96 (112)
T ss_dssp             TTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEEEEEETT---EE
T ss_pred             CCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCccEEEEEECC---ee
Confidence            3899999999986  67899999998885543          1         26999999999999998755432   23


Q ss_pred             eEeeEEEe
Q psy12725         62 ASGELKLG   69 (119)
Q Consensus        62 ~~~~~~v~   69 (119)
                      .+..+.|.
T Consensus        97 ssA~L~V~  104 (112)
T 2e6q_A           97 DSAALTIQ  104 (112)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            44555553

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.21  E-value=6.7e-11  Score=67.88  Aligned_cols=56  Identities=16%  Similarity=0.356  Sum_probs=46.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCC-----CCCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVP-----DHNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~-----~~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.|+|.|.+.+. .+.+.|+|++..+.     ......|.|.+++..|.|.|.|.+.+..
T Consensus       115 ~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~  175 (242)
T 1p6f_A          115 SGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN  175 (242)
T ss_dssp             TTCEEEEEEECTTS-CSEEEEEECSSSCEEEEEECSSEEEEEEEECCGGGCEEEEEEEEEET
T ss_pred             CCCcEEEEEecCCC-CCEEEEEECCCccCccccCCCceEEEEeCCCccccCEEEEEEEECCC
Confidence            38999999998764 46899999987664     2345789999999999999999998763

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=99.20  E-value=8.1e-11  Score=60.07  Aligned_cols=68  Identities=21%  Similarity=0.369  Sum_probs=46.3

Q ss_pred             CCccEEEEEEec-cCCCC----eeEEeeCCccCC---------------------CC------CCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYE-GNPVK----TISWMKDGKPVP---------------------DH------NEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~-~~~~~----~v~w~~~~~~~~---------------------~~------~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.++|.|.+. +.+.+    .+.|++++....                     ..      ...+|.|.+++.+|+|.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~   93 (118)
T 3udw_C           14 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGN   93 (118)
T ss_dssp             TTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSCCGGGCEE
T ss_pred             eCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeecChHHCeE
Confidence            489999999994 43433    499999742210                     00      05689999999999999


Q ss_pred             EEEEEEc-CCCCceeEeeEEE
Q psy12725         49 YQCVIRN-EQESAQASGELKL   68 (119)
Q Consensus        49 y~C~~~~-~~~~~~~~~~~~v   68 (119)
                      |.|.+.+ ..+.......+.|
T Consensus        94 Y~C~v~~~~~~~~~~~~~L~V  114 (118)
T 3udw_C           94 YTCLFVTFPQGSRSVDIWLRV  114 (118)
T ss_dssp             EEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEECCCCCccceEEEEE
Confidence            9999987 4433333444444

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.20  E-value=5.6e-11  Score=67.15  Aligned_cols=57  Identities=19%  Similarity=0.262  Sum_probs=47.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC-----CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~-----~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.++|.|...+.+.+.+.|+|++..+..     .....|.|.+++.+|.|.|.|.+.+..
T Consensus       119 ~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          119 PGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNR  180 (218)
T ss_dssp             TTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             CCCCEEEEEeCCCCCCCEEEEEECCCcccccccCCCccCEEEEccCCcccCEEEEEEEEcCC
Confidence            388999999766667789999999987643     245689999999999999999999763

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.19  E-value=1e-10  Score=60.02  Aligned_cols=69  Identities=13%  Similarity=0.253  Sum_probs=48.9

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeCCccCC-------------------CCCCCeEEEecCCCCCCeEEEEEEEc-CCC
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKDGKPVP-------------------DHNEPVFRIDSVRKEDKGMYQCVIRN-EQE   58 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~~~~~~-------------------~~~~~~l~~~~~~~~d~g~y~C~~~~-~~~   58 (119)
                      +|+.|+|.|...+.  +...+.|+|++..+.                   ...+.+|.|.+++.+|+|.|+|.+.. ..+
T Consensus        17 ~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g   96 (117)
T 3q0h_A           17 KGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDG   96 (117)
T ss_dssp             TTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEECSTTCEEECSCCGGGCEEEEEEEEEETTC
T ss_pred             cCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEeCCceEEEEeeCChhhCEEEEEEEEECCCC
Confidence            48999999999762  334789998753210                   01246799999999999999999754 445


Q ss_pred             CceeEeeEEEe
Q psy12725         59 SAQASGELKLG   69 (119)
Q Consensus        59 ~~~~~~~~~v~   69 (119)
                      .....+.+.|.
T Consensus        97 ~~~~~~~L~V~  107 (117)
T 3q0h_A           97 TYTGRIFLEVL  107 (117)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CeEEEEEEEEE
Confidence            55555566654

>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens}

Probab=99.19  E-value=2.9e-11  Score=67.45  Aligned_cols=112  Identities=13%  Similarity=0.200  Sum_probs=69.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC-----------------------CCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP-----------------------DHNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~-----------------------~~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.+.+.....+.|||.  +..+.                       ......|.|.+++.+|+|.|.|.+..
T Consensus        14 ~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~DsG~Y~Ca~~~   93 (199)
T 3gsn_A           14 EGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYLYIKGSQPEDSATYLCARNT   93 (199)
T ss_dssp             TTCCCEEEEECCCTTCCCEEEEEECTTSCCEEEEEECSTTCCCEETTEECCCBTTTTEEEEEBSSCCGGGCEEEEEEEES
T ss_pred             CCCCEEEEEEEcCCCCCEEEEEEECCCCCcEEEEEECCCCCccccCceEEEECCCCCEEEEEEccCcccCCccEEEEEcc
Confidence            489999999997655567999983  22110                       00124689999999999999999865


Q ss_pred             CCC-CceeEeeEEEeee--cCCCeeeecCCccccCCCCcEEEEeEEccCCCC-eEEEEECCEEccc
Q psy12725         56 EQE-SAQASGELKLGGR--FDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVN  117 (119)
Q Consensus        56 ~~~-~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~  117 (119)
                      ... .......+.|...  ..+|.+-.....   .  ..+.|.|.+.+..+. .+.|.++|..+..
T Consensus        94 ~~~~~fG~GT~L~V~~~~~~~~P~V~~~~~~---~--~~~tl~Cl~~gf~P~i~~~~~~~~~~~~~  154 (199)
T 3gsn_A           94 GNQFYFGTGTSLTVIPNIQNPDPAVYQLRDS---K--SSDKSVCLFTDFDSQTNVSQSKDSDAYIT  154 (199)
T ss_dssp             SSCEEECSCEEEEEECCCSSCCCEEEECCCS---S--SSSSCCEEEETCCTTCCSSCSSCSSEEEC
T ss_pred             cccccCCCCEEEEEecccCCCCCEEEEcccC---C--CCceEEEEeecccCCeEeEeccCCCeEec
Confidence            311 1122334555432  122333222111   1  236788999887444 6899988877654

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.19  E-value=9.6e-11  Score=74.62  Aligned_cols=67  Identities=21%  Similarity=0.360  Sum_probs=56.9

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      |+.+.|.|.+.|.|.|.++|+++++.+...         ....|.|..+...|.|.|+|.+.|..|.....+.+.|
T Consensus       497 G~~~~~~~~v~g~P~P~v~W~k~~~el~~s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~N~~G~~~~~v~l~V  572 (573)
T 3uto_A          497 GQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV  572 (573)
T ss_dssp             TSCEEEEEEEECSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEccCCCeEEEEECCEEcccCCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEEeCCCcEEEEEEEEE
Confidence            889999999999999999999999877542         2357899999999999999999999877766666554

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.17  E-value=6.6e-11  Score=65.62  Aligned_cols=56  Identities=11%  Similarity=0.118  Sum_probs=41.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC--------C---CCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD--------H---NEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~--------~---~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.++|.|.+.+.| +.+.|+|++..+..        .   ....|.|.+++.+|.|.|.|.+.+..
T Consensus       113 ~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  179 (196)
T 2d3v_A          113 SGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRH  179 (196)
T ss_dssp             ----CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETT
T ss_pred             CCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccC
Confidence            388999999999888 89999999876531        1   12688999999999999999999864

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.17  E-value=8.8e-11  Score=64.78  Aligned_cols=56  Identities=16%  Similarity=0.360  Sum_probs=46.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCC-----CCCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVP-----DHNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~-----~~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.++|.|.+.+ +.+.+.|+|++..+.     ......|.|.+++.+|.|.|.|.+.+..
T Consensus       112 ~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          112 SGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             TTCEEEEEEECSS-SCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             cCCEEEEEEEcCC-CCCEEEEEECCccccccccCCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence            3899999999876 456899999987654     2345689999999999999999998764

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.16  E-value=1.4e-10  Score=58.65  Aligned_cols=57  Identities=21%  Similarity=0.315  Sum_probs=44.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCc--cC------------CCC---------CCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGK--PV------------PDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~--~~------------~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.|+|.|.+.+.+.+.+.|||...  ..            ...         ....|.|.+++.+|+|.|.|.+.+..
T Consensus        15 ~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~   94 (108)
T 1jhl_L           15 PGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYICQQHNEY   94 (108)
T ss_dssp             TTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEEEECSSS
T ss_pred             CCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence            48999999999988888999998531  10            000         12469999999999999999998863

>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A 3tfk_C 1j8h_D* 1fyt_D* 4gkz_A* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A* 2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B 3e3q_D 4h1l_G

Probab=99.16  E-value=9.1e-11  Score=66.56  Aligned_cols=112  Identities=14%  Similarity=0.196  Sum_probs=68.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccC--------------C----------CCCCCeEEEecCCCCCCeEEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPV--------------P----------DHNEPVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~--------------~----------~~~~~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      .|+.|+|.|.+.+.....+.|||.  ++.+              .          ......|.|.+++.+|+|.|.|.+.
T Consensus        23 ~G~sVtL~C~~s~~~~~~v~WyrQ~pg~~~~~Li~~~~~~~~~~~~~Rfs~s~~~~~~~~sLtI~~lq~~DSG~YyCa~~  102 (226)
T 3tjh_C           23 EGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHWSDSAVYFCAVS  102 (226)
T ss_dssp             TTSCEEECCEEEESSCEEEEEEEECTTSCCEEEEEECSSSSEEECGGGEEEEEETTTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             cCCCEEEEEEEecCCCCeEEEEEECCCCCcEEEEEecCCCccccccCcEEEEEcCCCCEEEEEEecCCcccCCCEEEEEE
Confidence            489999999997655567999983  2211              0          0112468999999999999999987


Q ss_pred             cCC--CC--ceeEeeEEEeee--cCCCeeeecCCccccCCCCcEEEEeEEccCCCC-eEEEEECCEEccc
Q psy12725         55 NEQ--ES--AQASGELKLGGR--FDPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVN  117 (119)
Q Consensus        55 ~~~--~~--~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~  117 (119)
                      ...  ..  ......+.|...  ...|.+-.....    . ..+++.|.+.+..++ .+.|.++|..+..
T Consensus       103 ~~~~~~~~~fG~GT~LtV~~~~~~~~P~V~~~~~~----~-~~~tl~Cl~~~f~P~i~v~~~~~~~~~~~  167 (226)
T 3tjh_C          103 AKGTGSKLSFGKGAKLTVSPNIQNPDPAVYQLRDS----K-SSDKSVCLFTDFDSQTNVSQSKDSDVYIT  167 (226)
T ss_dssp             ESSCSSSEEECCCEEEEEECCCSSCCCEEEEEEEC----C----CEEEEEESCCTTCCCCCCSCTTEEEC
T ss_pred             ecCCccccccCCCeEEEEeCCCCCCCCEEEEcccC----C-CCeEEEEEcccccCCcEEEeeccCceeec
Confidence            531  11  112334555432  122333221111    1 346899999887445 6899998877654

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=99.15  E-value=2.1e-10  Score=73.99  Aligned_cols=97  Identities=13%  Similarity=0.175  Sum_probs=52.1

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCC-------CCCCeEEEecCCCCCCeEEEEEEEcCCCC---ceeEeeEEEeee
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPD-------HNEPVFRIDSVRKEDKGMYQCVIRNEQES---AQASGELKLGGR   71 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~-------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~---~~~~~~~~v~~~   71 (119)
                      |+.+.|.|...+ +.+.+.|++++..+..       ..+..|.|..++..|.|.|.|.+.+....   ......+.+.+.
T Consensus       548 g~~~~L~C~~~s-p~a~v~W~~~~~~l~~~~~~~~~~~~~~LlI~~v~~~DsG~Y~C~A~e~~~~~~~~~~~~~~~l~V~  626 (663)
T 1olz_A          548 GGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVK  626 (663)
T ss_dssp             TSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             CCcEEEEccCCC-CCCcEEEEECCeeccccCcceEEecCCeEEEEecCcccCeEEEEEEEECccCCCceEEEEEEEEEEE
Confidence            788999999998 9999999999876532       12467999999999999999999987322   222334444443


Q ss_pred             cCCCeeeecCC-ccccCCCCcEEEEeEEcc
Q psy12725         72 FDPPVIKESFS-DETLNPGPNYYFKCIASG  100 (119)
Q Consensus        72 ~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~  100 (119)
                       .+|.+...+. .....+|+.+.+.|.+..
T Consensus       627 -v~P~~~~~p~~~~~~~~g~~~~~~~~~~~  655 (663)
T 1olz_A          627 -VVPKPVVAPTLSVVQTEGSRIATKVLVAS  655 (663)
T ss_dssp             -C----------------------------
T ss_pred             -eCCccCCCCCChhhhhcCCceEEEeeccc
Confidence             3666666544 345679999999998743

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=99.15  E-value=5.4e-10  Score=57.75  Aligned_cols=68  Identities=18%  Similarity=0.324  Sum_probs=45.9

Q ss_pred             CCccEEEEEEeccCCC---CeeEEeeCCccCC------------------------------CCCCCeEEEecCCCCCCe
Q psy12725          1 MLALKFFTCKYEGNPV---KTISWMKDGKPVP------------------------------DHNEPVFRIDSVRKEDKG   47 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~---~~v~w~~~~~~~~------------------------------~~~~~~l~~~~~~~~d~g   47 (119)
                      +|+.|+|.|.+.+.+.   ..|.|+|......                              .....+|.|.+++.+|+|
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~DsG   93 (123)
T 4gjt_B           14 LGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQADEG   93 (123)
T ss_dssp             TTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEESCCSSSCS
T ss_pred             cCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEECCCChHHCE
Confidence            4999999999976543   3578998431100                              001357999999999999


Q ss_pred             EEEEEEEc-CCCCceeEeeEEE
Q psy12725         48 MYQCVIRN-EQESAQASGELKL   68 (119)
Q Consensus        48 ~y~C~~~~-~~~~~~~~~~~~v   68 (119)
                      .|.|.+.+ ..+.....+.+.|
T Consensus        94 ~Y~C~v~t~~~g~~~~~~~L~V  115 (123)
T 4gjt_B           94 EYECRVSTFPAGSFQARLRLRV  115 (123)
T ss_dssp             EEEEEEEESSSCEEEEEEEEEC
T ss_pred             EEEEEEEECCCCeEEeEEEEEE
Confidence            99998865 3444444444544

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=99.14  E-value=9.9e-11  Score=60.28  Aligned_cols=68  Identities=19%  Similarity=0.436  Sum_probs=47.4

Q ss_pred             CCccEEEEEEeccCCC----CeeEEeeCCcc-------C-------------C-C------CC------CCeEEEecCCC
Q psy12725          1 MLALKFFTCKYEGNPV----KTISWMKDGKP-------V-------------P-D------HN------EPVFRIDSVRK   43 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~----~~v~w~~~~~~-------~-------------~-~------~~------~~~l~~~~~~~   43 (119)
                      .|+.++|.|.+.+.+.    ..+.|++++..       +             . .      ..      ..+|.|.+++.
T Consensus        19 ~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   98 (126)
T 1eaj_A           19 KGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQL   98 (126)
T ss_dssp             TTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEECSCCG
T ss_pred             eCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccCCeEEEEECcCCh
Confidence            4899999999976543    35999985421       1             0 0      01      26799999999


Q ss_pred             CCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725         44 EDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus        44 ~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      +|+|.|.|.+.+..+.....+.+.|
T Consensus        99 ~D~G~Y~C~v~~~~~~~~~~~~L~V  123 (126)
T 1eaj_A           99 SDIGTYQCKVKKAPGVANKKIHLVV  123 (126)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             HHCeEEEEEEEcCCccCCcEEEEEE
Confidence            9999999999987554444444444

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=1.2e-09  Score=57.34  Aligned_cols=57  Identities=19%  Similarity=0.365  Sum_probs=43.4

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeCCcc----CC-----------C--------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKDGKP----VP-----------D--------HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~~~~----~~-----------~--------~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|.+.+. +...+.|||....    +.           .        .....|.|.+++.+|+|.|.|.+.+.
T Consensus        22 ~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  101 (136)
T 2d9c_A           22 AGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRK  101 (136)
T ss_dssp             TTSCEEECCEESCCCSCCCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCTTTCEEEEEEEEEC
T ss_pred             CCCCEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence            48999999999765 4568999996521    10           0        01457999999999999999999875


Q ss_pred             C
Q psy12725         57 Q   57 (119)
Q Consensus        57 ~   57 (119)
                      .
T Consensus       102 ~  102 (136)
T 2d9c_A          102 G  102 (136)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=99.13  E-value=1.6e-10  Score=58.28  Aligned_cols=69  Identities=25%  Similarity=0.368  Sum_probs=48.6

Q ss_pred             CCccEEEEEEeccCCC---CeeEEeeCCcc---------------C----CC---------CCCCeEEEecCCCCCCeEE
Q psy12725          1 MLALKFFTCKYEGNPV---KTISWMKDGKP---------------V----PD---------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~---~~v~w~~~~~~---------------~----~~---------~~~~~l~~~~~~~~d~g~y   49 (119)
                      .|+.|+|.|.+.+.+.   ..+.|++....               .    ..         ....+|.|.+++.+|+|.|
T Consensus         8 ~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y   87 (109)
T 2oyp_A            8 VGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTY   87 (109)
T ss_dssp             TTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCGGGCEEE
T ss_pred             cCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCChhCeEE
Confidence            4899999999876532   34899985421               0    00         0125799999999999999


Q ss_pred             EEEEEcCCCCceeEeeEEEe
Q psy12725         50 QCVIRNEQESAQASGELKLG   69 (119)
Q Consensus        50 ~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|.+.+..+.......+.|.
T Consensus        88 ~C~v~~~~~~~~~~~~l~V~  107 (109)
T 2oyp_A           88 CCRIQFPGLMNDKKLELKLD  107 (109)
T ss_dssp             EEEECCSSTTCCEEEEEEEE
T ss_pred             EEEEEcCCcccceEEEEEEE
Confidence            99999876555555555553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.13  E-value=1e-10  Score=72.45  Aligned_cols=68  Identities=19%  Similarity=0.434  Sum_probs=52.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCc-cCCC---------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGK-PVPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG   70 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~-~~~~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~   70 (119)
                      .|+.+.|.|.+.  |.|.|.|++++. .+..         .....|.|.+++.+|.|.|+|.+.|..+.......+.|..
T Consensus       366 ~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~~~~~~~~~~~g~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~  443 (452)
T 3zyi_A          366 EGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVST  443 (452)
T ss_dssp             TTSCCEECCBCC--TTSEEEEECTTSCEECSSCCCSSCEECTTSCEECSSCCTTCCEEEEEEEECSSCEEEEEEEEEC--
T ss_pred             CCCEEEEEEeCC--CCCcEEEEeCCCcEeccCCCCCCEEECCCCeEEEeecCHHHCEEEEEEEEcCCCcEEEEEEEEEEc
Confidence            489999999987  889999999543 3221         1346799999999999999999999988776666666543

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=99.12  E-value=1.9e-10  Score=60.32  Aligned_cols=56  Identities=16%  Similarity=0.427  Sum_probs=42.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccC---C-C---------CCCCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPV---P-D---------HNEPVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~---~-~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      .|+.|+|.|.+.+.  +.+.|||+.  ..+   . .         .....|.|.+++.+|+|.|+|.+.+..+
T Consensus        31 ~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~~~~r~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g  101 (133)
T 3khq_A           31 RSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYEDNGIYFCKQKCDSA  101 (133)
T ss_dssp             TTCCEEEEEEESSS--SCEEEEEECTTSCCEECCCTTTTEEEEEETTEEEEEECSCCGGGCEEEEEEESSCC-
T ss_pred             CCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEEeCCCEEEEcCCCEEEEEECCCChHHCEEEEEEEEeCCC
Confidence            48999999999876  889999863  221   0 0         1123599999999999999999988753

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.12  E-value=4.7e-10  Score=59.07  Aligned_cols=68  Identities=24%  Similarity=0.418  Sum_probs=46.8

Q ss_pred             CCccEEEEEEeccCC---CCeeEEeeCCcc--C-------------CC--C------------CCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP---VKTISWMKDGKP--V-------------PD--H------------NEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~---~~~v~w~~~~~~--~-------------~~--~------------~~~~l~~~~~~~~d~g~   48 (119)
                      +|+.|+|.|.+.+.+   ...+.|++++..  +             ..  .            ...+|.|.+++.+|+|.
T Consensus        20 ~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~   99 (139)
T 1pko_A           20 VGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGG   99 (139)
T ss_dssp             TTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGGGCEE
T ss_pred             eCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEccCCHHHCEE
Confidence            489999999997543   368999987531  0             00  0            12469999999999999


Q ss_pred             EEEEEEcCCCCceeEeeEEE
Q psy12725         49 YQCVIRNEQESAQASGELKL   68 (119)
Q Consensus        49 y~C~~~~~~~~~~~~~~~~v   68 (119)
                      |.|.+.+..+.....+.+.|
T Consensus       100 Y~C~v~~~~~~~~~~~~L~V  119 (139)
T 1pko_A          100 YTCFFRDHSYQEEAAVELKV  119 (139)
T ss_dssp             EEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEcCCCceEEEEEEEE
Confidence            99999987654333444444

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.12  E-value=6.4e-10  Score=56.57  Aligned_cols=68  Identities=13%  Similarity=0.197  Sum_probs=47.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCC--------------------C-----CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVP--------------------D-----HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~--------------------~-----~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|.|.|.....+...+.|||......                    .     -.+.+|.|.+++.+|.|.|+|.+.+
T Consensus        14 ~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ngSL~I~nvt~~D~G~Ytc~v~~   93 (111)
T 2qsq_A           14 EGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDAGFYTLHVIK   93 (111)
T ss_dssp             TTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTSCEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCCcEEEccCcccCCeEEEEEEEe
Confidence            48999999985332334699999653220                    0     1357899999999999999999998


Q ss_pred             CCCC-ceeEeeEEE
Q psy12725         56 EQES-AQASGELKL   68 (119)
Q Consensus        56 ~~~~-~~~~~~~~v   68 (119)
                      ..+. ......+.|
T Consensus        94 ~~~~~~~~~~~L~V  107 (111)
T 2qsq_A           94 SDLVNEEATGQFRV  107 (111)
T ss_dssp             TTSCCEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEE
Confidence            7543 333344443

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.11  E-value=2.1e-10  Score=63.06  Aligned_cols=57  Identities=19%  Similarity=0.352  Sum_probs=46.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      .|+.+.|.|.+.+. .+.+.|+|++..+...     ....|.|.+++.+|.|.|.|.+.|...
T Consensus       107 ~G~~v~l~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          107 SGGDVTLQCQTRYG-FDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             CTTCEEEEEECSSC-CCEEEEEECCCCTTSCCCCEEEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             CCCcEEEEEEcCCC-CcEEEEEECCCcCcceecCCCceEEEEEccCCccCCeEEEEEEEeCCC
Confidence            38999999998764 4689999999876532     234678889999999999999999754

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=99.11  E-value=1.4e-09  Score=60.86  Aligned_cols=101  Identities=11%  Similarity=0.257  Sum_probs=62.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--cc---C-----------CC---------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KP---V-----------PD---------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~---~-----------~~---------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      +|+.|+|.|.+.+.....+.|||..  ..   +           ..         .....|.|.+++.+|+|.|.|.+.+
T Consensus        14 ~G~~v~L~C~~s~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~   93 (203)
T 2bnu_A           14 EGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRP   93 (203)
T ss_dssp             TTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEEEEECCCCcceEEEEEeCCCCCcEEEEEECCCCccccCCCeEEEEcCCCCEEEEEEeeCCcccCeEEEEEEEc
Confidence            4899999999976555579999732  11   1           00         1124789999999999999999986


Q ss_pred             CC---CC--ceeEeeEEEeeec--CCCeeeecCCccccCCCCcEEEEeEEcc-CCCCeE
Q psy12725         56 EQ---ES--AQASGELKLGGRF--DPPVIKESFSDETLNPGPNYYFKCIASG-NPTPEI  106 (119)
Q Consensus        56 ~~---~~--~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~~  106 (119)
                      ..   ..  ......+.|....  ..|.+.....     ....+.|.|.+.+ .|.|.+
T Consensus        94 ~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~~~-----~~~~~~L~C~~~g~~P~p~v  147 (203)
T 2bnu_A           94 TSGGSYIPTFGRGTSLIVHPYIQNPDPAVYQLRR-----SKSSDKSVCLFTDFDSQTNV  147 (203)
T ss_dssp             CSSSTTCCEECCCEEEEEECCCSSCCCEEEEECC-----SSSSSCEEEEEESCCTTCCC
T ss_pred             CcCcceeeeeCCCEEEEEeCCCCCCCCeEEecCC-----CCCCcEEEEEccccccCccc
Confidence            41   11  1122345554321  2344433221     1237899999988 576655

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.11  E-value=7.9e-10  Score=62.16  Aligned_cols=69  Identities=23%  Similarity=0.467  Sum_probs=53.0

Q ss_pred             CCccEEEEEEe-ccCCCCeeEEee-CCccCCCC--------CC---CeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          1 MLALKFFTCKY-EGNPVKTISWMK-DGKPVPDH--------NE---PVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         1 ~g~~~~l~c~~-~~~~~~~v~w~~-~~~~~~~~--------~~---~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      .|+.+.|.|.+ .+.|.+.+.|++ ++..+...        ..   ..+.+..++.+|.|.|+|.+.|..+.......+.
T Consensus       124 ~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  203 (222)
T 4i0k_A          124 PGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVT  203 (222)
T ss_dssp             CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEE
T ss_pred             CCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEE
Confidence            37899999999 778889999998 44444321        11   2367888999999999999999988776666666


Q ss_pred             Ee
Q psy12725         68 LG   69 (119)
Q Consensus        68 v~   69 (119)
                      +.
T Consensus       204 V~  205 (222)
T 4i0k_A          204 IT  205 (222)
T ss_dssp             CC
T ss_pred             Ee
Confidence            64

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=99.10  E-value=5e-10  Score=57.68  Aligned_cols=56  Identities=21%  Similarity=0.323  Sum_probs=43.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccCC------------CC---------CCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPVP------------DH---------NEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~~------------~~---------~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|.+.+.+.+.+.|||..  ....            ..         ....|.|.+++.+|+|.|.|.+.+.
T Consensus        15 ~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   93 (120)
T 1mqk_L           15 VGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYYCQHHYG   93 (120)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence            4899999999988777889999843  2110            00         1246899999999999999999875

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.10  E-value=1.9e-10  Score=65.05  Aligned_cols=67  Identities=16%  Similarity=0.281  Sum_probs=45.3

Q ss_pred             CccEEEEEEecc-CCCCeeEEeeCCc-cCCCC-------CCC---eEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          2 LALKFFTCKYEG-NPVKTISWMKDGK-PVPDH-------NEP---VFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         2 g~~~~l~c~~~~-~~~~~v~w~~~~~-~~~~~-------~~~---~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      |+.+.|.|.+.+ .|.+.|.|++++. .+...       ...   .+.+..++.+|.|.|+|.+.|..+.......+.|
T Consensus       133 g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v  211 (226)
T 4f80_A          133 DGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISI  211 (226)
T ss_dssp             TTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECC
T ss_pred             CCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEE
Confidence            788999999987 4899999998653 33221       111   2344567889999999999999877766666655

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.10  E-value=3.2e-10  Score=63.74  Aligned_cols=69  Identities=16%  Similarity=0.357  Sum_probs=49.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC-CccCCCC--------CCCe---EEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD-GKPVPDH--------NEPV---FRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~-~~~~~~~--------~~~~---l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.+.|.+.+.|+++ +..+...        ....   .....++..|.|.|+|.+.|..+.......+.+
T Consensus       130 ~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v  209 (222)
T 3sbw_C          130 VTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVI  209 (222)
T ss_dssp             TTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCcEEEEEEecCCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEe
Confidence            378899999999999999999998 5444321        1111   122345678999999999999887766666665


Q ss_pred             e
Q psy12725         69 G   69 (119)
Q Consensus        69 ~   69 (119)
                      .
T Consensus       210 ~  210 (222)
T 3sbw_C          210 P  210 (222)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=99.09  E-value=7.7e-10  Score=56.41  Aligned_cols=70  Identities=16%  Similarity=0.287  Sum_probs=47.6

Q ss_pred             CCccEEEEEEecc-CCCCeeEEeeCCcc----C---------------C---------CCCCCeEEEecCCCCCCeEEEE
Q psy12725          1 MLALKFFTCKYEG-NPVKTISWMKDGKP----V---------------P---------DHNEPVFRIDSVRKEDKGMYQC   51 (119)
Q Consensus         1 ~g~~~~l~c~~~~-~~~~~v~w~~~~~~----~---------------~---------~~~~~~l~~~~~~~~d~g~y~C   51 (119)
                      .|+.|+|.|.+.. .....+.||+....    .               .         .....+|.|.+++.+|+|.|.|
T Consensus        11 ~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C   90 (116)
T 2or8_A           11 VGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCC   90 (116)
T ss_dssp             TTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGGCEEEEE
T ss_pred             eCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCcccCEEEEE
Confidence            4899999999865 34567999986511    0               0         0123579999999999999999


Q ss_pred             EEEcCCCCceeEeeEEEee
Q psy12725         52 VIRNEQESAQASGELKLGG   70 (119)
Q Consensus        52 ~~~~~~~~~~~~~~~~v~~   70 (119)
                      .+.+..........+.+.+
T Consensus        91 ~v~~~~~~~~~~~~~~l~V  109 (116)
T 2or8_A           91 RVEIPGWFNDQKVTFSLQV  109 (116)
T ss_dssp             EECCSSTTCCEEEEEEEEE
T ss_pred             EEEcCCcccccEEEEEEEE
Confidence            9987643332244444443

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=99.07  E-value=7.1e-10  Score=56.01  Aligned_cols=56  Identities=23%  Similarity=0.391  Sum_probs=42.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--cc---C-----------CC-------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KP---V-----------PD-------HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~---~-----------~~-------~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|.+.+.+.+.+.|||..  ..   +           ..       .....|.|.+++.+|+|.|.|.+.+.
T Consensus        15 ~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   93 (108)
T 1qfw_M           15 VGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSATDFTLTISSVQAEDFADYHCGQTYN   93 (108)
T ss_dssp             TTCCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCSSEEEEEESSCCTTCCSEEEEEECSS
T ss_pred             CCCCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCCCEEEEEECCCChhhCEEEEEEEccC
Confidence            4899999999987777789999843  11   1           00       01236999999999999999999875

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=99.06  E-value=2.3e-10  Score=59.04  Aligned_cols=76  Identities=14%  Similarity=0.147  Sum_probs=49.6

Q ss_pred             CCccEEEEEEec-cCCCCeeEEeeCCc-cC----------C-C---------CCCCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          1 MLALKFFTCKYE-GNPVKTISWMKDGK-PV----------P-D---------HNEPVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         1 ~g~~~~l~c~~~-~~~~~~v~w~~~~~-~~----------~-~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      +|+.|+|.|... ......+.||+... .+          . .         ....+|.|.+++..|+|.|.|.+.+..+
T Consensus        18 ~G~~VtL~c~~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~~~~~sL~I~nv~~~DsG~Y~c~v~~~~~   97 (121)
T 2edo_A           18 SGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTG   97 (121)
T ss_dssp             TTSCEEECCSSCCCSSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEECTTTCCEEESSCCGGGCSEEEEEEEETTT
T ss_pred             eCCCEEEeCCCCCCCceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEeCCCceEEEeCCCHHHCeEEEEEEEcCCC
Confidence            489999999873 33345799998642 10          0 0         1346899999999999999999987543


Q ss_pred             C-ceeEeeEEEeeecCCCe
Q psy12725         59 S-AQASGELKLGGRFDPPV   76 (119)
Q Consensus        59 ~-~~~~~~~~v~~~~~~~~   76 (119)
                      . ....+.+.|......|.
T Consensus        98 ~~~~~~~~L~V~~~~~~P~  116 (121)
T 2edo_A           98 NEQEWKIKLQVLDPVPKPV  116 (121)
T ss_dssp             EEEECCEECEEECCSCCCC
T ss_pred             cEEEEEEEEEEECCCCCCE
Confidence            2 23344555543333343

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.06  E-value=1.7e-10  Score=64.55  Aligned_cols=59  Identities=14%  Similarity=0.322  Sum_probs=46.7

Q ss_pred             CccEEEEEEecc-CCCC-eeEEeeCCccCCCC-----------CC-----CeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          2 LALKFFTCKYEG-NPVK-TISWMKDGKPVPDH-----------NE-----PVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         2 g~~~~l~c~~~~-~~~~-~v~w~~~~~~~~~~-----------~~-----~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      |+.+.|.|.+.+ .|.+ .+.|++++..+...           ..     ..|.|..+..+|.|.|+|.+.|.....
T Consensus       127 g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          127 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             CCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence            678999999987 4554 89999998776432           11     278899999999999999999986543

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A

Probab=99.06  E-value=5.2e-10  Score=56.42  Aligned_cols=54  Identities=26%  Similarity=0.443  Sum_probs=42.7

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCC-----------CCCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVP-----------DHNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~-----------~~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      |+.|+|.|.... ....+.|+|++....           ......+.|..++..|.|.|.|...+.
T Consensus        23 G~~VtL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~~~~~f~i~~vt~~~aG~Y~C~~~~~   87 (106)
T 3kgr_A           23 GSHVTFVCRGPV-GVQTFRLERESRSTYNDTEDVSQASPSESEARFRIDSVSEGNAGPYRCIYYKP   87 (106)
T ss_dssp             TCCEEEEEEECT-TCCEEEEEEGGGTEEEEECCCEEEETTEEEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCeEEEEEEccC-CCcEEEEEECCCccccccccccccCCCCcceEEEecCCCcCCCceEEEEeeCC
Confidence            899999999865 345799999987551           113467899999999999999998764

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=99.06  E-value=1e-09  Score=55.50  Aligned_cols=60  Identities=17%  Similarity=0.480  Sum_probs=44.2

Q ss_pred             CCccEEEEEEeccCCCC-----eeEEeeCCcc-C-------------C--C-------CCCCeEEEecCCCCCCeEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVK-----TISWMKDGKP-V-------------P--D-------HNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~-----~v~w~~~~~~-~-------------~--~-------~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      +|+.|.|.|.+.+.|.+     .+.|++.+.. +             .  .       ....+|.|.+++.+|+|.|.|.
T Consensus         8 ~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~Y~C~   87 (110)
T 1ncn_A            8 FNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCI   87 (110)
T ss_dssp             TTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEEEEEE
T ss_pred             eCCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEECCCEEEEEcCCChHHCEEEEEE
Confidence            48999999998754433     4999986531 0             0  0       1246899999999999999999


Q ss_pred             EEcCCCCc
Q psy12725         53 IRNEQESA   60 (119)
Q Consensus        53 ~~~~~~~~   60 (119)
                      +.+..+..
T Consensus        88 v~~~~~~~   95 (110)
T 1ncn_A           88 IHHKKPTG   95 (110)
T ss_dssp             EEEECSSS
T ss_pred             EEcCCCCc
Confidence            98875443

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.05  E-value=2.5e-10  Score=63.24  Aligned_cols=57  Identities=18%  Similarity=0.287  Sum_probs=46.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC----------CCCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      .|+.++|.|.+.+ +.+.+.|+|++..+...          ....|.|.+++.+|.|.|.|.+.|..+
T Consensus       113 ~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          113 SGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             TTCCEEEEEEEEE-EEEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             CCCeEEEEEecCC-CCCEEEEEeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            3889999999987 44689999998765321          245799999999999999999999754

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.05  E-value=1.1e-09  Score=62.62  Aligned_cols=57  Identities=16%  Similarity=0.332  Sum_probs=44.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEee--CCccCC---------------------CCCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMK--DGKPVP---------------------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~--~~~~~~---------------------~~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.++|.|.+.+.+.+.+.|+|  ++..+.                     ......|.|.+++.+|.|.|.|.+.+..
T Consensus       149 ~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~  228 (247)
T 2ghw_B          149 PGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNW  228 (247)
T ss_dssp             TTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSS
T ss_pred             CCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCC
Confidence            38999999999988888999999  444331                     0112359999999999999999998753

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.05  E-value=1.5e-09  Score=54.29  Aligned_cols=60  Identities=17%  Similarity=0.295  Sum_probs=45.6

Q ss_pred             CCccEEEEEEecc-CCCCeeEEeeCCc----cCCC--C-----------CCCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          1 MLALKFFTCKYEG-NPVKTISWMKDGK----PVPD--H-----------NEPVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         1 ~g~~~~l~c~~~~-~~~~~v~w~~~~~----~~~~--~-----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      .|+++.|.|.+.+ .+.|+|+|.|.+.    .+..  +           ....|.|..+...|.|.|.|.+.+..+..
T Consensus        28 ~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~~~g~i  105 (122)
T 1xau_A           28 TGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVI  105 (122)
T ss_dssp             TTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred             cCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEcCCccEEEEeeCCCCce
Confidence            4899999999976 4789999999542    2211  1           12378899999999999999999875443

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.05  E-value=1.7e-09  Score=60.01  Aligned_cols=60  Identities=13%  Similarity=0.383  Sum_probs=44.4

Q ss_pred             CccEEEEEEec-cCCCCeeEEeeCCccCCCC--------CCCeE---EEecCCCCCCeEEEEEEEcCCCCce
Q psy12725          2 LALKFFTCKYE-GNPVKTISWMKDGKPVPDH--------NEPVF---RIDSVRKEDKGMYQCVIRNEQESAQ   61 (119)
Q Consensus         2 g~~~~l~c~~~-~~~~~~v~w~~~~~~~~~~--------~~~~l---~~~~~~~~d~g~y~C~~~~~~~~~~   61 (119)
                      |+.+.|.|.+. +.|.+.|.|++++..+...        ....+   .+..++..|.|.|+|.+.|..+...
T Consensus       121 g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s  192 (201)
T 1dr9_A          121 SNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVN  192 (201)
T ss_dssp             TTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEE
T ss_pred             CCeEEEEEecCCccCCCEEEEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceee
Confidence            67889999995 8899999999998876532        11221   2344567899999999999876543

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.04  E-value=9.9e-10  Score=61.37  Aligned_cols=58  Identities=17%  Similarity=0.400  Sum_probs=45.3

Q ss_pred             CccEEEEEEeccC-CCC-eeEEeeCCccCCCC----------CC------CeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          2 LALKFFTCKYEGN-PVK-TISWMKDGKPVPDH----------NE------PVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         2 g~~~~l~c~~~~~-~~~-~v~w~~~~~~~~~~----------~~------~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      |+.++|.|.+.+. |.+ .+.|++++..+...          ..      ..|.|..+..+|.|.|+|.+.|....
T Consensus       126 g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (210)
T 1lk3_L          126 TGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS  201 (210)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             CCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence            7899999999873 543 89999999876432          11      15888888899999999999997643

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=99.04  E-value=1.2e-09  Score=56.21  Aligned_cols=59  Identities=12%  Similarity=0.340  Sum_probs=41.0

Q ss_pred             CCccEEEEEEeccC----CCCeeEEeeCCcc------C----------------CC---------CCCCeEEEecCCCCC
Q psy12725          1 MLALKFFTCKYEGN----PVKTISWMKDGKP------V----------------PD---------HNEPVFRIDSVRKED   45 (119)
Q Consensus         1 ~g~~~~l~c~~~~~----~~~~v~w~~~~~~------~----------------~~---------~~~~~l~~~~~~~~d   45 (119)
                      .|+.|+|.|.+...    +...+.|++.+..      +                ..         ....+|.|.+++.+|
T Consensus        13 ~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   92 (124)
T 1neu_A           13 VGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSD   92 (124)
T ss_dssp             TTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSCCGGG
T ss_pred             eCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEEEEccCChhh
Confidence            48999999998542    4568999974320      0                00         023579999999999


Q ss_pred             CeEEEEEEEcCCCC
Q psy12725         46 KGMYQCVIRNEQES   59 (119)
Q Consensus        46 ~g~y~C~~~~~~~~   59 (119)
                      +|.|.|.+.+..+.
T Consensus        93 ~G~Y~C~v~~~~~~  106 (124)
T 1neu_A           93 NGTFTCDVKNPPDI  106 (124)
T ss_dssp             CEEEEEEEEC----
T ss_pred             CEEEEEEEEcCCCC
Confidence            99999999986543

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=99.04  E-value=2.2e-09  Score=56.07  Aligned_cols=58  Identities=24%  Similarity=0.434  Sum_probs=43.4

Q ss_pred             CCccEEEEEEecc---CCCCeeEEeeCCccC-----------------------------C---C------CCCCeEEEe
Q psy12725          1 MLALKFFTCKYEG---NPVKTISWMKDGKPV-----------------------------P---D------HNEPVFRID   39 (119)
Q Consensus         1 ~g~~~~l~c~~~~---~~~~~v~w~~~~~~~-----------------------------~---~------~~~~~l~~~   39 (119)
                      .|+.|+|.|.+..   .+.+.+.||+.....                             .   .      ....+|.|.
T Consensus        18 ~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~sL~I~   97 (135)
T 1xt5_A           18 AGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLT   97 (135)
T ss_dssp             TTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEESCTTSCCEEEC
T ss_pred             CCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEEecCCCCeEEEC
Confidence            4899999999753   467789999854321                             0   0      013679999


Q ss_pred             cCCCCCCeEEEEEEEcCCC
Q psy12725         40 SVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus        40 ~~~~~d~g~y~C~~~~~~~   58 (119)
                      +++.+|+|.|.|.+.+...
T Consensus        98 ~v~~~D~G~Y~C~v~~~~~  116 (135)
T 1xt5_A           98 HVHPQDGGRYWCQVAQWSI  116 (135)
T ss_dssp             SCCGGGCEEEEEEEECSSC
T ss_pred             CCChhhCcEEEEEEEcCCc
Confidence            9999999999999998643

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=99.03  E-value=3.5e-09  Score=53.79  Aligned_cols=68  Identities=13%  Similarity=0.196  Sum_probs=46.0

Q ss_pred             CCccEEEEEEeccCC-CCeeEEeeCCcc-----C-CC-------------------CCCCeEEEecCCCCCCeEEEEEEE
Q psy12725          1 MLALKFFTCKYEGNP-VKTISWMKDGKP-----V-PD-------------------HNEPVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~-~~~v~w~~~~~~-----~-~~-------------------~~~~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      .|+.|+|.|.+.+.. ...+.||+....     + ..                   .....|.|.+++.+|+|.|.|.+.
T Consensus        15 ~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~DsG~Y~C~v~   94 (113)
T 1zox_A           15 EQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGIT   94 (113)
T ss_dssp             TTSCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             CCCcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHHHCEEEEEeeE
Confidence            489999999997643 336999985421     1 00                   012479999999999999999998


Q ss_pred             cCCCCceeEeeEEE
Q psy12725         55 NEQESAQASGELKL   68 (119)
Q Consensus        55 ~~~~~~~~~~~~~v   68 (119)
                      +........+.+.|
T Consensus        95 ~~~~~~~~~v~L~V  108 (113)
T 1zox_A           95 KGGLDPMFKVTVNI  108 (113)
T ss_dssp             CSSSCCEEEEEEEE
T ss_pred             cCCCCccEEEEEEE
Confidence            86433333344443

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=99.03  E-value=1.6e-09  Score=54.82  Aligned_cols=57  Identities=25%  Similarity=0.384  Sum_probs=43.3

Q ss_pred             CCccEEEEEEe-ccCCCCeeEEeeCCcc-CC------------C---------CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKY-EGNPVKTISWMKDGKP-VP------------D---------HNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~-~~~~~~~v~w~~~~~~-~~------------~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.|+|.|.. .+.+.+.+.||+.... +.            .         ....+|.|.+++.+|+|.|.|.+.+..
T Consensus        17 ~G~~v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~   96 (110)
T 2ptt_A           17 TGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKGTYYMRVLRET   96 (110)
T ss_dssp             TTSCEEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECTTTCCEEESSCCGGGCEEEEEEEESSS
T ss_pred             cCCcEEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeCCCccEEECCCCcccCeEEEEEEEcCC
Confidence            48999999998 5556678999984211 10            0         134679999999999999999998764

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.02  E-value=1.6e-09  Score=60.05  Aligned_cols=55  Identities=16%  Similarity=0.346  Sum_probs=42.7

Q ss_pred             cEEEEEEeccC-CCCeeEEeeCCccCCCCCCCeEEEecCCCC-CCeEEEEEEEcCCCCc
Q psy12725          4 LKFFTCKYEGN-PVKTISWMKDGKPVPDHNEPVFRIDSVRKE-DKGMYQCVIRNEQESA   60 (119)
Q Consensus         4 ~~~l~c~~~~~-~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~-d~g~y~C~~~~~~~~~   60 (119)
                      .++|.|.+.+. |.+.+.|++++..+.  ....|.+...... |.|.|+|.+.|..+..
T Consensus       126 ~v~L~C~~~g~~p~p~i~W~~~g~~l~--~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~  182 (193)
T 2if7_A          126 ELHLTCSVEDADDNVSFRWEALGNTLS--SQPNLTVSWDPRISSEQDYTCIAENAVSNL  182 (193)
T ss_dssp             EEEEEEEEESCCTTCEEEEEETTEEEE--SSSEEEEEECTTTCSCCEEEEEEEETTEEE
T ss_pred             eEEEEEEEecCCCceEEEEEeCCEEcC--CCCeEEEEeccCcCCCCcEEEEEECCCCcc
Confidence            79999999885 578999999988763  3456777544444 8999999999986543

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=99.02  E-value=1.7e-09  Score=54.98  Aligned_cols=57  Identities=14%  Similarity=0.371  Sum_probs=42.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccCC----------------------CCCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPVP----------------------DHNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~~----------------------~~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|.+.+.+ +.+.|||..  ..+.                      ......|.|.+++.+|+|.|.|.+.+.
T Consensus        15 ~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~   93 (113)
T 1h5b_A           15 EGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAEAS   93 (113)
T ss_dssp             TTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             cCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChhhCEEEEEEEecC
Confidence            489999999998654 689999853  1110                      011237999999999999999999986


Q ss_pred             CC
Q psy12725         57 QE   58 (119)
Q Consensus        57 ~~   58 (119)
                      .+
T Consensus        94 ~~   95 (113)
T 1h5b_A           94 SG   95 (113)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.01  E-value=6.7e-10  Score=61.18  Aligned_cols=59  Identities=14%  Similarity=0.233  Sum_probs=44.3

Q ss_pred             cEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEe
Q psy12725          4 LKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG   64 (119)
Q Consensus         4 ~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~   64 (119)
                      .+.|.|.+.+.|.+.|.|++++..+ ......+.+. ....|.|.|+|.+.|..+......
T Consensus       117 ~v~L~C~~~~~p~~~~~W~~~g~~l-~~~~~~i~~~-~~~~d~G~Y~C~a~N~~~~~~s~~  175 (182)
T 1hnf_A          117 NTTLTCEVMNGTDPELNLYQDGKHL-KLSQRVITHK-WTTSLSAKFKCTAGNKVSKESSVE  175 (182)
T ss_dssp             TTEEEEECSSCSSCEEEEEESSCEE-EEESSCEEEE-CCSCEEEEEEEEEECSSCEEEEEE
T ss_pred             cEEEEeEccCCCCCEEEEEECCEEC-CCCCcEEEEe-cccCCCcEEEEEEEeCCCCcEEcc
Confidence            5789999998888899999999877 2233344433 357899999999999976554433

>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*

Probab=99.01  E-value=3.7e-09  Score=58.78  Aligned_cols=101  Identities=12%  Similarity=0.200  Sum_probs=61.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccCC------------CC-----------CCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPVP------------DH-----------NEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~~------------~~-----------~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.+.+.....+.|||..  ..+.            ..           ....|.|.+++.+|.|.|.|.+.+
T Consensus        15 ~G~~v~L~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~   94 (194)
T 1lp9_E           15 EGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFL   94 (194)
T ss_dssp             TTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEEEEEEE
T ss_pred             cCCCEEEEEEeCCCCCceEEEEEeCCCCCeEEEEEEcCCCCcccCCCeEEEecCCCCEEEEEEcccCcccCeeEEEEEec
Confidence            4899999999976656689999742  2110            00           124799999999999999999986


Q ss_pred             C---CCC--ceeEeeEEEeeec--CCCeeeecCCccccCCCCcEEEEeEEccC-CCCeE
Q psy12725         56 E---QES--AQASGELKLGGRF--DPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEI  106 (119)
Q Consensus        56 ~---~~~--~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~  106 (119)
                      .   ...  ......+.|....  ..|.+.....     ....++|.|.+.+. |.+.+
T Consensus        95 ~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~~~-----~~~~~tL~Cl~~gf~P~~~V  148 (194)
T 1lp9_E           95 ASSSFSKLVFGQGTSLSVVPNIQNPEPAVYQLKD-----PRSQDSTLCLFTDFDSQINV  148 (194)
T ss_dssp             CSSSSCEEEECCCEEEEEECCCSSCCCEEEEEEC-----TTSSSCEEEEEESCCTTSCC
T ss_pred             ccCCcceeeeccCceEEecCcCCCCCCeeEecCC-----CCCCcEEEEEeecccCCccc
Confidence            3   111  1122344443311  1333332211     12368999999884 66555

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.01  E-value=2.2e-09  Score=60.21  Aligned_cols=59  Identities=14%  Similarity=0.350  Sum_probs=45.4

Q ss_pred             CccEEEEEEecc-CCCC-eeEEeeCCccCCCC----------CC------CeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          2 LALKFFTCKYEG-NPVK-TISWMKDGKPVPDH----------NE------PVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         2 g~~~~l~c~~~~-~~~~-~v~w~~~~~~~~~~----------~~------~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      |+.++|.|.+.+ .|.+ .|.|++++..+...          ..      +.|.|......|.|.|+|.+.|.....
T Consensus       129 g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  205 (216)
T 2xzc_L          129 SGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS  205 (216)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             CCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence            678999999987 4554 89999998766432          11      157888888899999999999986443

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.01  E-value=1.5e-08  Score=59.71  Aligned_cols=55  Identities=11%  Similarity=0.171  Sum_probs=44.0

Q ss_pred             CCccEEEEEEecc-------CCCCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEG-------NPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~-------~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      +|+.++|.|.+.+       .+.+.+.|++++..+...       ....|.|.++...+ |.|.|.+.+.
T Consensus        18 ~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~~~~~~~~~~~~L~i~~~~~~~-g~Y~C~a~~~   86 (303)
T 1i1r_A           18 LHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLN-IQLTCNILTF   86 (303)
T ss_dssp             TTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGGGCEEEETTEEEEEECSCCCSE-EEEEEEEEET
T ss_pred             CCCCEEEEEEECCccccccCCChhheEEEECCEECChhheeeeCCcEEEEEEcCcCCCc-eEEEEecccC
Confidence            4899999999985       477899999999877432       12468899988874 9999999874

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.01  E-value=6.7e-10  Score=62.02  Aligned_cols=59  Identities=10%  Similarity=0.115  Sum_probs=42.4

Q ss_pred             CCccEEEEEEeccC-CC--CeeEEeeCCccCCCC---C----------CCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          1 MLALKFFTCKYEGN-PV--KTISWMKDGKPVPDH---N----------EPVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~--~~v~w~~~~~~~~~~---~----------~~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      .|+.++|.|.+.+. |.  +.+.|+|++..+...   .          ...|.+......|.|.|+|.+.|..+.
T Consensus       105 ~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~  179 (202)
T 1vca_A          105 AGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE  179 (202)
T ss_dssp             TTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             CCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccC
Confidence            48999999999875 33  378999998765311   0          123456666677889999999997654

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=99.00  E-value=1.3e-09  Score=55.29  Aligned_cols=55  Identities=18%  Similarity=0.389  Sum_probs=42.0

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeCC--cc----CCC-----------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKDG--KP----VPD-----------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~~--~~----~~~-----------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.+.+.  +.+.+.|||..  ..    +..           .....|.|.+++.+|+|.|.|.+.+
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   87 (111)
T 2ywz_A           14 TGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQADY   87 (111)
T ss_dssp             TTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCSBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceEeeEeCCCEEEEEeCCCCEEEEEECCCChhcCEEEEEEEEc
Confidence            48999999999765  46789999852  21    100           1234699999999999999999987

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.00  E-value=1.3e-09  Score=61.98  Aligned_cols=56  Identities=14%  Similarity=0.315  Sum_probs=44.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCc--cCC-----------------------CCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGK--PVP-----------------------DHNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~--~~~-----------------------~~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.++|.|.+.+.+.+.+.|+|++.  ...                       ......|.|.+++.+|.|.|.|.+.|
T Consensus       141 ~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n  220 (238)
T 2p1y_A          141 EGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAID  220 (238)
T ss_dssp             TTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             CCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEee
Confidence            48999999999988889999999631  100                       01124799999999999999999998


Q ss_pred             C
Q psy12725         56 E   56 (119)
Q Consensus        56 ~   56 (119)
                      .
T Consensus       221 ~  221 (238)
T 2p1y_A          221 T  221 (238)
T ss_dssp             T
T ss_pred             C
Confidence            7

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=99.00  E-value=1.1e-09  Score=56.30  Aligned_cols=56  Identities=23%  Similarity=0.383  Sum_probs=42.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccCC------------CC---------CCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPVP------------DH---------NEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~~------------~~---------~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|.+.+.+.+.+.|||..  ....            ..         ....|.|.+++.+|+|.|.|.+.+.
T Consensus        17 ~G~~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   95 (119)
T 2e27_L           17 LGGKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSGRDYSFSISNLEPEDAATYYCLQYDN   95 (119)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCEEEEEEECGG
T ss_pred             CCCCEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccC
Confidence            4899999999988777889999843  1110            00         1236899999999999999999875

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=99.00  E-value=7.8e-09  Score=58.18  Aligned_cols=99  Identities=13%  Similarity=0.239  Sum_probs=61.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--cc---C-C--C-----------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KP---V-P--D-----------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~---~-~--~-----------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.+.+.....+.|||..  ..   + .  .                 .....|.|.+++.+|.|.|.|.+.+
T Consensus        17 ~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~   96 (210)
T 2eys_A           17 EGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICVVSD   96 (210)
T ss_dssp             TTCCEEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEES
T ss_pred             cCCCEEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCcccCceEEEEEEc
Confidence            4899999999977666689999832  11   1 1  1                 0124789999999999999999987


Q ss_pred             CC---CC--ceeEeeEEEeeec--CCCeeeecCCccccCCCCcEEEEeEEccCCCC
Q psy12725         56 EQ---ES--AQASGELKLGGRF--DPPVIKESFSDETLNPGPNYYFKCIASGNPTP  104 (119)
Q Consensus        56 ~~---~~--~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~  104 (119)
                      ..   ..  ......+.|....  .+|.+......     ...++|.|.+.+.++.
T Consensus        97 ~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~~~~~~-----~~~~tl~Cl~~gf~P~  147 (210)
T 2eys_A           97 RGSTLGRLYFGRGTQLTVWPDIQNPDPAVYQLRDS-----KSSDKSVCLFTDFDSQ  147 (210)
T ss_dssp             CSSTTCCEEECCCEEEEEECCCSSCCCEEEEECCC-----SSSSCEEEEEESCCTT
T ss_pred             cCCCcccceECCCEEEEEECCCCCCCCeEEecCCC-----CCCceEEEEcccccCC
Confidence            42   11  1122345553321  23333332211     1278899999887444

>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, domain swapping, collagen receptor, structural genomics; 1.76A {Mus musculus}

Probab=98.99  E-value=3.1e-09  Score=53.21  Aligned_cols=66  Identities=21%  Similarity=0.291  Sum_probs=47.0

Q ss_pred             CccEEEEEEeccCCC----CeeEEeeCCccCC------CCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          2 LALKFFTCKYEGNPV----KTISWMKDGKPVP------DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         2 g~~~~l~c~~~~~~~----~~v~w~~~~~~~~------~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      |+.|+|.| ... ..    ..+.|+|++....      ......+.|..++..|.|.|.|...+...-...+..+.+.
T Consensus        23 G~~VTL~C-~~~-~~~~~~~~f~l~k~g~~~~~~~~~~~~~~a~f~i~~vt~~~aG~Y~C~~~~~~~~S~~Sdpl~L~   98 (102)
T 4esk_A           23 GTFVTVVC-SYS-DKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCIYSKGITWSERSKTLELK   98 (102)
T ss_dssp             TCCEEEEE-ECT-TTGGGCCEEEEEETTEEEEEEECCSSCSEEEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEE
T ss_pred             CCcEEEEE-CCC-cCCCcccEEEEEECCccccccccCCCCcceEEEeCcCCcccCeeEEEEEeCCCccccCcCCEEEE
Confidence            88999999 643 33    5789999986532      2345678999999999999999988754323334444443

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=98.99  E-value=8e-10  Score=55.90  Aligned_cols=56  Identities=20%  Similarity=0.339  Sum_probs=43.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--cc---CC---------CC---------CCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KP---VP---------DH---------NEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~---~~---------~~---------~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|.+.+.+.+.+.||+..  ..   +.         ..         ....|.|.+++.+|+|.|.|.+.+.
T Consensus        17 ~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   95 (109)
T 2q20_A           17 VGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQYDN   95 (109)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccCCEEEEEECCCChhhCEEEEEEEeeC
Confidence            4899999999987777889999853  11   10         00         1236899999999999999999864

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.99  E-value=4e-10  Score=64.98  Aligned_cols=57  Identities=21%  Similarity=0.301  Sum_probs=45.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEee--CCccCCC---------------------CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMK--DGKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~--~~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.++|.|.+.+.+.+.+.|+|  ++..+..                     .....|.|.+++.+|.|.|.|.+.|..
T Consensus       153 ~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          153 VGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             TTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred             CCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence            38999999999988878999999  5543310                     012368999999999999999999864

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=98.99  E-value=1.8e-09  Score=55.98  Aligned_cols=55  Identities=15%  Similarity=0.382  Sum_probs=40.9

Q ss_pred             CCccEEEEEEeccCCCC----eeEEeeCC----------------ccCCC------------C------------CCCeE
Q psy12725          1 MLALKFFTCKYEGNPVK----TISWMKDG----------------KPVPD------------H------------NEPVF   36 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~----~v~w~~~~----------------~~~~~------------~------------~~~~l   36 (119)
                      +|+.|+|.|.+...+.+    .+.|++..                .....            .            ...+|
T Consensus        16 ~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~~~~~~~sL   95 (128)
T 3r0n_A           16 LGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAELQDATL   95 (128)
T ss_dssp             TTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCCCBCSBCCE
T ss_pred             cCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEeccccccccccccCCCCeEE
Confidence            48999999999876544    79999852                11111            0            03489


Q ss_pred             EEecCCCCCCeEEEEEEEc
Q psy12725         37 RIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus        37 ~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|.+++.+|+|.|.|.+..
T Consensus        96 ~I~~v~~~D~G~Y~C~v~~  114 (128)
T 3r0n_A           96 ALHGLTVEDEGNYTCEFAT  114 (128)
T ss_dssp             EECSCCGGGCEEEEEEEEE
T ss_pred             EEccCCchhCeEEEEEEEe
Confidence            9999999999999998765

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=98.98  E-value=1.3e-09  Score=54.98  Aligned_cols=56  Identities=20%  Similarity=0.334  Sum_probs=42.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccCC------------CC---------CCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPVP------------DH---------NEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~~------------~~---------~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|.+.+.+.+.+.|||..  ..+.            ..         ....|.|.+++.+|+|.|.|.+.+.
T Consensus        15 ~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   93 (107)
T 1i8k_A           15 TGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYCLQSFN   93 (107)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCCCEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEeeC
Confidence            4899999999987777789999853  2110            00         1236899999999999999999865

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=98.98  E-value=1.3e-09  Score=55.16  Aligned_cols=56  Identities=18%  Similarity=0.341  Sum_probs=41.2

Q ss_pred             CCccEEEEEE-eccCC-CCeeEEeeCCccCC-----------------------CCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCK-YEGNP-VKTISWMKDGKPVP-----------------------DHNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~-~~~~~-~~~v~w~~~~~~~~-----------------------~~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|. +.+.+ ...+.|||......                       ......|.|.+++.+|+|.|.|.+.+
T Consensus        14 ~G~~v~L~C~v~~~~~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   93 (109)
T 1pew_A           14 PGKTVTISCTRSSGNIASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADYYCQSYD   93 (109)
T ss_dssp             TTSCEEEEEEESSSCGGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEEEEeCCCCCCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCChhhCEEEEEEEEe
Confidence            4899999999 76554 46899998652110                       00123689999999999999999987


Q ss_pred             C
Q psy12725         56 E   56 (119)
Q Consensus        56 ~   56 (119)
                      .
T Consensus        94 ~   94 (109)
T 1pew_A           94 A   94 (109)
T ss_dssp             T
T ss_pred             C
Confidence            4

>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, extra celluar domain, domain swappin nysgrc, structural genomics; 1.90A {Mus musculus}

Probab=98.98  E-value=3.4e-09  Score=54.36  Aligned_cols=67  Identities=21%  Similarity=0.271  Sum_probs=46.3

Q ss_pred             CccEEEEEEeccCCC----CeeEEeeCCccCC------CCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEee
Q psy12725          2 LALKFFTCKYEGNPV----KTISWMKDGKPVP------DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG   70 (119)
Q Consensus         2 g~~~~l~c~~~~~~~----~~v~w~~~~~~~~------~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~   70 (119)
                      |+.|+|.| ... ..    ..+.|||++....      ......+.|..++..|.|.|.|...+...-...+..+.+.+
T Consensus        23 G~~VTL~C-~~~-~~~~~~~~f~L~k~g~~~~~~~~~~~~~~a~f~i~~vt~~daG~Y~C~y~~~~~wS~~Sdpl~L~V   99 (118)
T 4ety_A           23 GTFVTVVC-SYS-DKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCIYSKGITWSERSKTLELKV   99 (118)
T ss_dssp             TCCEEEEE-ECT-TTGGGCCEEEEEETTEEEEEEECCSSSSEEEEEECSCCGGGCEEEEEEEEC----CEECCCEEEEE
T ss_pred             CCcEEEEE-CCC-CCCcccCEEEEEECCcCccccccCCCCcceEEEeCccCccCCeEEEEEeeCCCccccccCCEEEEE
Confidence            88999999 643 33    5789999987542      23456789999999999999999876543333444555544

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=98.98  E-value=3.9e-09  Score=54.79  Aligned_cols=56  Identities=20%  Similarity=0.383  Sum_probs=42.9

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeCCcc----CC-C------------------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKDGKP----VP-D------------------HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~~~~----~~-~------------------~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|.+.+. +.+.+.|||....    +. .                  .....|.|.+++.+|+|.|.|.+.+.
T Consensus        17 ~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~li~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   96 (127)
T 2jju_A           17 AGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRK   96 (127)
T ss_dssp             TTSCEEECCEESCCCSCCCEEEEECSSTTCEEEEESSSSCCTTEEEC-------CCBCCEEECSCCGGGCEEEEEEEEEC
T ss_pred             CCCCEEEEEEEeCCCCCCEEEEEecCCCCcEEEEECCCCccCcEEeeEeeeecCCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence            48999999999765 5668999986521    10 0                  11357999999999999999999875

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.97  E-value=1.5e-09  Score=60.39  Aligned_cols=53  Identities=11%  Similarity=0.213  Sum_probs=42.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC----------CCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.++|.|.+.+ +.+.+.|+|++..+...          ....|.|.+++  |.|.|.|.+.+.
T Consensus       121 ~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          121 AGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             TTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred             CCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence            4899999999986 56789999998766421          14578888888  999999999865

>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A

Probab=98.97  E-value=8.2e-09  Score=57.66  Aligned_cols=99  Identities=10%  Similarity=0.214  Sum_probs=58.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--cc---C---C-------C---------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KP---V---P-------D---------HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~---~---~-------~---------~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|.+.+.....+.|||..  ..   +   .       .         .....|.|.+++.+|.|.|.|.+.+.
T Consensus        13 ~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~   92 (200)
T 2nw2_A           13 EGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGYSYLLLKELQMKDSASYLCAVQAS   92 (200)
T ss_dssp             TTCCEEEEEECCCSSCCCEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC--
T ss_pred             cCCCEEEEEEECCCCCceEEEEEeCCCCCcEEEEEEcCCCcccCCceEEEecCCCCEEEEEECccCcccCCcEEEEEEcC
Confidence            4899999999876555679999732  11   1   0       0         11247899999999999999998652


Q ss_pred             --CC--CceeEeeEEEeeec--CCCeeeecCCccccCCCCcEEEEeEEccCCCC
Q psy12725         57 --QE--SAQASGELKLGGRF--DPPVIKESFSDETLNPGPNYYFKCIASGNPTP  104 (119)
Q Consensus        57 --~~--~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~  104 (119)
                        ..  .......+.|....  ..|.+.....     ....++|.|.+.+..+.
T Consensus        93 ~~~~~~~fg~gt~L~V~~~~~~~~P~V~~~~~-----~~~~~tl~Cl~~gf~P~  141 (200)
T 2nw2_A           93 GGSYIPTFGRGTSLIVHPYIQNPDPAVYQLRD-----SKSSDKSVCLFTDFDSQ  141 (200)
T ss_dssp             -CCCCCEECCCEEEEEECCCSSCCCEEEEEEE-----CC--CCEEEEEESCCTT
T ss_pred             CcceeeeeCCCEEEEEecCcccCCCeEEEcCC-----CCCCceEEEEeecccCC
Confidence              11  11123345554321  2233332211     12278899999887543

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=98.97  E-value=2.6e-09  Score=54.85  Aligned_cols=57  Identities=25%  Similarity=0.402  Sum_probs=43.2

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeCCcc----CC---------C----------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKDGKP----VP---------D----------HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~~~~----~~---------~----------~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      +|+.|+|.|.+.+. +.+.+.|||++..    +.         .          .....|.|.+++.+|+|.|.|.+.+.
T Consensus        21 ~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  100 (120)
T 2yz1_A           21 AGDSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIRISNVTPEDAGTYYCVKFQK  100 (120)
T ss_dssp             TTCCEEECCEESCCCSCCCEEEEESSSTTCEEEEEECEECTTTCCSEEECCBSSTTBCCEEECSCCGGGCEEEEEEEEEC
T ss_pred             CCCCEEEEeEECCCCCCcEEEEEcCCCCCcEEEEEcCCcccCcccceeeccccCCCeEEEEECCCCHHHCEEEEEEEEcC
Confidence            48999999999765 5578999997521    10         0          11257999999999999999999875


Q ss_pred             C
Q psy12725         57 Q   57 (119)
Q Consensus        57 ~   57 (119)
                      .
T Consensus       101 ~  101 (120)
T 2yz1_A          101 G  101 (120)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=98.96  E-value=1e-09  Score=55.44  Aligned_cols=45  Identities=24%  Similarity=0.538  Sum_probs=39.1

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcccC
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  118 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~  118 (119)
                      +|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++||..+..+
T Consensus        13 pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~   57 (107)
T 3knb_B           13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAAS   57 (107)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC
T ss_pred             CCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccce
Confidence            567777677777889999999999999999999999999988653

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.96  E-value=9.2e-10  Score=60.46  Aligned_cols=55  Identities=11%  Similarity=0.205  Sum_probs=42.2

Q ss_pred             ccEEEEEEe-ccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          3 ALKFFTCKY-EGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         3 ~~~~l~c~~-~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      ..+.|.|.+ .+ |.+.+.|++++..+.......+.+..  ..|.|.|+|.+.|..+..
T Consensus       116 ~~v~L~C~~~~g-p~p~i~W~~~~~~l~~~~~~~l~~~~--~~d~g~Y~C~a~N~~~~~  171 (180)
T 2dru_A          116 SNATLTCEVLEG-TDVELKLYQGKEHLRSLRQKTMSYQW--TNLRAPFKCKAVNRVSQE  171 (180)
T ss_dssp             GGTEEEEECSSC-TTCEEEEEETTEEEEEESSSEEEEEC--SCCSSCEEEEEEETTEEE
T ss_pred             CCEEEEEEeCCC-CCCEEEEEECCeECcCCCCCEEEEEE--hhcCccEEEEEecCcCcc
Confidence            457899999 55 88999999999877533445666532  789999999999986543

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.96  E-value=2e-09  Score=61.67  Aligned_cols=55  Identities=20%  Similarity=0.342  Sum_probs=42.8

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeC--CccCCC----------------------------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKD--GKPVPD----------------------------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~--~~~~~~----------------------------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.++|.|.+.+.+  .+.+.|||+  +..+..                            .....|.|.+++.+|.|.
T Consensus       145 ~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~  224 (250)
T 3esu_F          145 PGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAV  224 (250)
T ss_dssp             TTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEE
T ss_pred             CCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEE
Confidence            489999999998766  779999997  332210                            111269999999999999


Q ss_pred             EEEEEEc
Q psy12725         49 YQCVIRN   55 (119)
Q Consensus        49 y~C~~~~   55 (119)
                      |.|.+.+
T Consensus       225 Y~C~~~~  231 (250)
T 3esu_F          225 YFCARSG  231 (250)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            9999997

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.96  E-value=2.5e-10  Score=63.86  Aligned_cols=57  Identities=14%  Similarity=0.432  Sum_probs=44.9

Q ss_pred             CccEEEEEEeccC-CC-CeeEEeeCCccCCCC--------C------CCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          2 LALKFFTCKYEGN-PV-KTISWMKDGKPVPDH--------N------EPVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         2 g~~~~l~c~~~~~-~~-~~v~w~~~~~~~~~~--------~------~~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      |+.++|.|.+.+. |. +.+.|++++..+...        .      ...|.|..+..+|.|.|+|.+.|..+
T Consensus       129 g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  201 (213)
T 3mj8_L          129 TNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGN  201 (213)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTE
T ss_pred             CCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCc
Confidence            8899999999875 33 489999999877431        1      13377888888899999999999863

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.96  E-value=2.1e-09  Score=62.03  Aligned_cols=56  Identities=20%  Similarity=0.412  Sum_probs=43.6

Q ss_pred             CCccEEEEEEeccCCCC-----eeEEee--CCccCC-----------C----------CCCCeEEEecCCCCCCeEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVK-----TISWMK--DGKPVP-----------D----------HNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~-----~v~w~~--~~~~~~-----------~----------~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      .|+.++|.|.+.+.+.+     .+.|+|  ++..+.           .          .....|.|.+++.+|.|.|+|.
T Consensus       135 ~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~  214 (256)
T 1nqb_A          135 LGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCF  214 (256)
T ss_dssp             TTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             cCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEE
Confidence            48999999999887754     899999  554331           0          0123689999999999999999


Q ss_pred             EEcC
Q psy12725         53 IRNE   56 (119)
Q Consensus        53 ~~~~   56 (119)
                      +.+.
T Consensus       215 a~~~  218 (256)
T 1nqb_A          215 QGSH  218 (256)
T ss_dssp             ECSS
T ss_pred             EccC
Confidence            9875

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.96  E-value=7.1e-10  Score=62.59  Aligned_cols=55  Identities=18%  Similarity=0.477  Sum_probs=42.2

Q ss_pred             CccE-EEEEEe-ccCCCCeeEEeeCCccCCCCC----C------------------CeEEEecCCCCCCeEEEEEEEcC
Q psy12725          2 LALK-FFTCKY-EGNPVKTISWMKDGKPVPDHN----E------------------PVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         2 g~~~-~l~c~~-~~~~~~~v~w~~~~~~~~~~~----~------------------~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      |+.+ .|.|.+ .+.|.+.+.|++++..+....    .                  ..|.+......|.|.|+|.+.|.
T Consensus       133 g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          133 DSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             CSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             CCceEEEEEEeECcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            6666 999999 888999999999998775433    0                  34666544455699999999995

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=98.95  E-value=4.4e-09  Score=53.20  Aligned_cols=57  Identities=16%  Similarity=0.289  Sum_probs=42.0

Q ss_pred             CCccEEEEEEeccCC-CCeeEEeeCCc--cCC-----------C-----------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNP-VKTISWMKDGK--PVP-----------D-----------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~-~~~v~w~~~~~--~~~-----------~-----------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.+.... ...+.|||...  ...           .           .....|.|.+++.+|+|.|.|.+.+
T Consensus        10 ~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   89 (110)
T 2q87_A           10 VGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGTYWCGVDT   89 (110)
T ss_dssp             TTSCEEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCCcEEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEEEEEccCCHHHCEEEEEEEec
Confidence            489999999987643 46899998531  110           0           0124789999999999999999988


Q ss_pred             CC
Q psy12725         56 EQ   57 (119)
Q Consensus        56 ~~   57 (119)
                      ..
T Consensus        90 ~~   91 (110)
T 2q87_A           90 PW   91 (110)
T ss_dssp             TT
T ss_pred             Cc
Confidence            74

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.95  E-value=9.1e-10  Score=63.20  Aligned_cols=59  Identities=14%  Similarity=0.290  Sum_probs=45.6

Q ss_pred             CccEEEEEEeccC-CC-CeeEEeeCCccCCCC----------C------CCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          2 LALKFFTCKYEGN-PV-KTISWMKDGKPVPDH----------N------EPVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         2 g~~~~l~c~~~~~-~~-~~v~w~~~~~~~~~~----------~------~~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      |+.+.|.|.+.+. |. ..+.|++++..+...          .      ...|.|..+..+|.|.|+|.+.|.....
T Consensus       169 g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          169 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             CCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence            6789999999874 43 469999998766432          1      1358888888999999999999986543

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.95  E-value=1.3e-10  Score=64.95  Aligned_cols=58  Identities=16%  Similarity=0.342  Sum_probs=45.1

Q ss_pred             CccEEEEEEeccC-CC-CeeEEeeCCccCCCCC--------------CCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          2 LALKFFTCKYEGN-PV-KTISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         2 g~~~~l~c~~~~~-~~-~~v~w~~~~~~~~~~~--------------~~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      |+.+.|.|.+.+. |. +.+.|++++..+....              ...|.|..+..+|.|.|+|.+.|....
T Consensus       128 g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          128 TNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             TTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             CCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence            7789999999876 54 7999999987764321              123677788889999999999998654

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.95  E-value=1.6e-09  Score=61.36  Aligned_cols=59  Identities=14%  Similarity=0.332  Sum_probs=45.1

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC----------CC------CeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH----------NE------PVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~----------~~------~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      |+.+.|.|.+.+. | .+.+.|++++..+...          ..      ..|.+.....+|.|.|+|.+.|.....
T Consensus       150 g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  226 (237)
T 3sob_L          150 SGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS  226 (237)
T ss_dssp             HTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             CCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCC
Confidence            5779999999874 5 5799999998876431          11      346677778889999999999986444

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=98.95  E-value=7.5e-10  Score=55.23  Aligned_cols=44  Identities=34%  Similarity=0.705  Sum_probs=37.9

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ||.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~   48 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHS   48 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCT
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeee
Confidence            56666666667788999999999999999999999999998864

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.94  E-value=2.3e-09  Score=61.68  Aligned_cols=57  Identities=16%  Similarity=0.298  Sum_probs=43.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccCC--------------C-------CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPVP--------------D-------HNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~~--------------~-------~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.++|.|.+.+.+.+.+.|||..  ..+.              .       .....|.|.+++.+|.|.|+|.+.+..
T Consensus       152 ~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~  231 (256)
T 3umt_A          152 LGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASS  231 (256)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSS
T ss_pred             CCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCC
Confidence            4899999999998888899999842  2111              0       012359999999999999999998753

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.93  E-value=1.3e-09  Score=61.79  Aligned_cols=58  Identities=19%  Similarity=0.408  Sum_probs=44.3

Q ss_pred             CccEEEEEEeccC-CC-CeeEEeeCCccCCCC---------C------CCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          2 LALKFFTCKYEGN-PV-KTISWMKDGKPVPDH---------N------EPVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         2 g~~~~l~c~~~~~-~~-~~v~w~~~~~~~~~~---------~------~~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      |+.++|.|.+.+. |. +.+.|++++..+...         .      ...|.|..+..+|.|.|+|.+.|....
T Consensus       150 g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  224 (234)
T 2j6e_L          150 ANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST  224 (234)
T ss_dssp             TSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBC
T ss_pred             CCceEEEEEEEEEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCc
Confidence            6789999999875 43 489999998876321         1      134777778889999999999998644

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=98.93  E-value=4e-09  Score=54.72  Aligned_cols=57  Identities=23%  Similarity=0.407  Sum_probs=42.5

Q ss_pred             CCccEEEEEEeccCC----CCeeEEeeCC--ccCC------------C---------CCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNP----VKTISWMKDG--KPVP------------D---------HNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~----~~~v~w~~~~--~~~~------------~---------~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|.+.+.+    ...+.|||..  ....            .         .....|.|.+++.+|+|.|.|.+
T Consensus        15 ~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~   94 (126)
T 4ffy_L           15 LGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDSVETDDAATYYCQQ   94 (126)
T ss_dssp             TTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecCCCEEEEEECCCCHHHCEEEEEEE
Confidence            489999999998765    5679999842  1110            0         12246999999999999999999


Q ss_pred             EcCC
Q psy12725         54 RNEQ   57 (119)
Q Consensus        54 ~~~~   57 (119)
                      .+..
T Consensus        95 ~~~~   98 (126)
T 4ffy_L           95 NNED   98 (126)
T ss_dssp             CSSS
T ss_pred             ecCC
Confidence            8753

>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}

Probab=98.93  E-value=1.1e-08  Score=58.53  Aligned_cols=111  Identities=19%  Similarity=0.236  Sum_probs=65.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEee--CCccCC----C--------C---------CCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMK--DGKPVP----D--------H---------NEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~--~~~~~~----~--------~---------~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      +|+.|+|.|.....-...+.||+  .++...    .        .         ...+|.|..++.+|++.|+|...+..
T Consensus        15 ~G~~vtisC~~S~~i~~y~~WyqQ~pG~~P~lLiy~~s~~~sGvp~RFSgS~Sgt~ftLtIs~lq~eD~A~YyC~~~~~~   94 (259)
T 4f9l_D           15 LGDTITITCHASQNINLWLSWYQQRPGNIPKLLIYRASNLHTGVPSRFSGSGSATGFTLTISSLQPEDIATYYCQQGHSY   94 (259)
T ss_dssp             TTCEEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEEESCCGGGCEEEEEEECSSS
T ss_pred             CCCCEEEEEEcCCCCCCCEEEEEECCCCCCEEEEECCCccCCCCCCCEEeeccCCeEEEEEcccChhhCEEEEEeecCCC
Confidence            48999999987544444688996  332210    0        0         12369999999999999999865432


Q ss_pred             C-CceeEeeEEEeeecCCCe-------------------eeecCCccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         58 E-SAQASGELKLGGRFDPPV-------------------IKESFSDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        58 ~-~~~~~~~~~v~~~~~~~~-------------------~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      . ......++.+......|.                   .+..+....+.+|.++.|.|.+.|..  ...+.|.+.
T Consensus        95 ~~tFG~GTkLeikr~~aa~~~s~~~~s~~a~ssGv~sqvqL~eSG~~lvkPG~Sl~LSC~aSG~tfs~y~~~WvRQ  170 (259)
T 4f9l_D           95 PYTFGGGTKLDIKRADAGGGGSGGGGSGGGGSGGGGSQVQLQESGAELVKPGASVKLSCKASGYTFTRYYLYWVKQ  170 (259)
T ss_dssp             SCCBCCCCEECBCCC----------------------CCCEEEECCCEEESSSCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CCCccCCeEEEEeccccCccccccccccccccCCccccceEEeECCCEECCCCcEEEEEeeeCCCcccCcEEEEEE
Confidence            1 111122222211000111                   11123344578899999999998764  336888763

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=98.92  E-value=8.1e-09  Score=52.56  Aligned_cols=55  Identities=16%  Similarity=0.340  Sum_probs=41.6

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--ccC----C-----------CCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KPV----P-----------DHNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~~----~-----------~~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.+.+.+  .+.+.|||..  ...    .           ......|.|.+++.+|+|.|.|.+.+
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (113)
T 1sq2_N           14 TGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGV   87 (113)
T ss_dssp             TTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECB
T ss_pred             cCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceEeEEeCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEe
Confidence            489999999997654  5689999852  211    0           01234799999999999999999987

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=98.92  E-value=2.4e-09  Score=58.30  Aligned_cols=54  Identities=7%  Similarity=0.152  Sum_probs=41.8

Q ss_pred             EEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCce
Q psy12725          6 FFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ   61 (119)
Q Consensus         6 ~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~   61 (119)
                      .|.|.+.+.|.+.+.|++++..+.......+.+.  ...|.|.|+|.+.|..+...
T Consensus       109 ~L~C~~~~~p~p~i~W~~~~~~l~~~~~~~l~~~--~~~~~g~Y~C~a~N~~~~~~  162 (171)
T 1ccz_A          109 TLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQ--WTNLRAPFKCKAVNRVSQES  162 (171)
T ss_dssp             EEEEECSSCSSCEEEEEETTEEEEEESSSEEEEE--CSCCSSCEEEEEEETTEEEE
T ss_pred             EEEEEeCCCCCcEEEEEECCEECcCCcceEEEEe--ccCCCceEEEEEEcccCccc
Confidence            6899999888899999999988754444455543  36788999999999875443

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.92  E-value=2.1e-09  Score=61.74  Aligned_cols=69  Identities=17%  Similarity=0.328  Sum_probs=48.0

Q ss_pred             CCccEEEEEEeccCCCC----eeEEeeCC--ccCC--------------C-------CCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVK----TISWMKDG--KPVP--------------D-------HNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~----~v~w~~~~--~~~~--------------~-------~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|.+.+.+.+    .+.|||+.  ..+.              .       .....|.|.+++.+|+|.|.|.+
T Consensus       147 ~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~  226 (253)
T 3uzq_A          147 LGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQR  226 (253)
T ss_dssp             TTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEE
Confidence            48999999999987765    89999842  2211              0       01235999999999999999999


Q ss_pred             EcCCCC-ceeEeeEEEe
Q psy12725         54 RNEQES-AQASGELKLG   69 (119)
Q Consensus        54 ~~~~~~-~~~~~~~~v~   69 (119)
                      .+.... ......+.|.
T Consensus       227 ~n~~~~~fg~gt~l~v~  243 (253)
T 3uzq_A          227 SNEVPWTFGGGTKLEIK  243 (253)
T ss_dssp             CSSSSCCBCCCEEEEEC
T ss_pred             ccCCCcEECCCEEEEEc
Confidence            886432 2233445543

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.92  E-value=3.4e-09  Score=61.91  Aligned_cols=55  Identities=18%  Similarity=0.301  Sum_probs=43.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEee--CCccCC------------C---------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMK--DGKPVP------------D---------HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~--~~~~~~------------~---------~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.++|.|.+.+.+ +.+.|||  ++..+.            .         .....|.|.+++.+|.|.|+|.+.+.
T Consensus       176 ~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  253 (282)
T 1qok_A          176 PGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSS  253 (282)
T ss_dssp             TTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeC
Confidence            389999999999888 8999999  554331            0         01236899999999999999999875

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=98.92  E-value=2.7e-09  Score=53.86  Aligned_cols=55  Identities=18%  Similarity=0.424  Sum_probs=41.5

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--cc----CC-----------CCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KP----VP-----------DHNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~----~~-----------~~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.+.+..  .+.+.|||..  ..    +.           ......|.|.+++.+|+|.|.|.+.+
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (108)
T 2coq_A           14 TGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKAYR   87 (108)
T ss_dssp             TTCCEEEEEEECCSSEEEEEEEEEEEETTCCCEEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEEeEeCCCcCCCCEEEEEEcCCCCCcEEEEEeCCceEEEEcCCCCEEEEEECCCCcccCEEEEEEEEe
Confidence            489999999997653  5689999853  21    10           01235799999999999999999986

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=98.92  E-value=2.3e-08  Score=59.24  Aligned_cols=55  Identities=11%  Similarity=0.166  Sum_probs=44.7

Q ss_pred             CCccEEEEEEeccC-----CCCeeEEeeCCccCCCC------CC---CeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGN-----PVKTISWMKDGKPVPDH------NE---PVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-----~~~~v~w~~~~~~~~~~------~~---~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      +|+.++|.|.+.+.     +.+.+.|++++..+...      .+   ..|.|.++...|.|.|.|.+.+
T Consensus        14 ~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~   82 (313)
T 2d9q_B           14 LGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWG   82 (313)
T ss_dssp             TTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTCEECCCSSSCCCEEEEESCCCSSEEEEEEEEESS
T ss_pred             CCCCEEEEEEECCCCCCCCcccceEEEeCCEECCccceEEEecCeEEEEEEEeccCCCccceEEeeecC
Confidence            48999999999886     56889999998876432      11   5699999999999999998754

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.92  E-value=7.8e-09  Score=59.54  Aligned_cols=57  Identities=9%  Similarity=0.307  Sum_probs=43.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCc--cC-------------------------CCCCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGK--PV-------------------------PDHNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~--~~-------------------------~~~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.++|.|.+.+. .+.+.|||...  ..                         .......|.|.+++.+|.|.|+|.+
T Consensus       151 ~G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a  229 (256)
T 3tf7_C          151 TGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCAS  229 (256)
T ss_dssp             TTCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEE
T ss_pred             CCCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEe
Confidence            48999999999875 67899998321  10                         0112357999999999999999999


Q ss_pred             EcCCC
Q psy12725         54 RNEQE   58 (119)
Q Consensus        54 ~~~~~   58 (119)
                      .+..+
T Consensus       230 ~n~~g  234 (256)
T 3tf7_C          230 SDAPG  234 (256)
T ss_dssp             EEETT
T ss_pred             cCCCC
Confidence            88654

>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D

Probab=98.92  E-value=1.4e-08  Score=57.31  Aligned_cols=100  Identities=11%  Similarity=0.222  Sum_probs=60.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccC------CC-----------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPV------PD-----------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~------~~-----------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      +|+.|+|.|.+. .....+.|||..  ...      ..                 .....|.|.+++.+|+|.|.|.+..
T Consensus        15 ~G~~vtL~C~~~-~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~   93 (215)
T 1oga_D           15 EGENLTVYCNSS-SVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAG   93 (215)
T ss_dssp             TTCCEEEEEECS-SCCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             cCCCEEEEEEEc-CCCceEEEEEeCCCCCcEEEEEEcCCCCcccCCCEEEEEcCCCCEEEEEEccCCcccCceEEEEEec
Confidence            489999999984 345679999742  111      00                 0124789999999999999999986


Q ss_pred             CCCCc--eeEeeEEEeeec--CCCeeeecCCccccCCCCcEEEEeEEccC-CCCeE
Q psy12725         56 EQESA--QASGELKLGGRF--DPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEI  106 (119)
Q Consensus        56 ~~~~~--~~~~~~~v~~~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~  106 (119)
                      .....  .....+.|....  ..|.+.....     ....++|.|.+.+. |.+.+
T Consensus        94 ~~~~~~fg~gt~L~V~~~~~~~~P~V~~~~~-----~~~~vtL~C~~~gf~P~p~v  144 (215)
T 1oga_D           94 SQGNLIFGKGTKLSVKPNIQNPDPAVYQLRD-----SKSSDKSVCLFTDFDSQTNV  144 (215)
T ss_dssp             TTSSEEECCCEEEEEECCCSSCCCEEEEEEB-----SSSSSCEEEEEESCCTTCCC
T ss_pred             ccccceeCCCEEEEEeccCCCcCCEEEEcCC-----CCCCeEEEEEccccccCccc
Confidence            42111  122344444321  2343332211     12378999998774 55544

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.91  E-value=2.8e-09  Score=61.25  Aligned_cols=57  Identities=21%  Similarity=0.389  Sum_probs=43.4

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--ccCC------C----------------------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KPVP------D----------------------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~~~------~----------------------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.++|.|.+.+.+  .+.+.|||+.  ..+.      .                      .....|.|.+++.+|+|.
T Consensus       148 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~  227 (256)
T 3ux9_B          148 PGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAV  227 (256)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEE
Confidence            389999999998765  6799999862  2110      0                      112349999999999999


Q ss_pred             EEEEEEcCC
Q psy12725         49 YQCVIRNEQ   57 (119)
Q Consensus        49 y~C~~~~~~   57 (119)
                      |.|.+.+..
T Consensus       228 Y~C~~~~~~  236 (256)
T 3ux9_B          228 YYCARYIDF  236 (256)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEcCC
Confidence            999999863

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.90  E-value=1.4e-09  Score=60.85  Aligned_cols=56  Identities=23%  Similarity=0.448  Sum_probs=43.0

Q ss_pred             CccEEEEEEeccC-CCC-eeEEeeCCccCCCC---------CC------CeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGN-PVK-TISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~-~~~-~v~w~~~~~~~~~~---------~~------~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      |+.+.|.|.+.+. |.+ .|.|++++..+...         ..      ..|.|......|.|.|+|.+.+..
T Consensus       130 g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~  202 (212)
T 1q0x_L          130 TAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEG  202 (212)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETT
T ss_pred             CCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCC
Confidence            7789999999875 433 89999998766421         11      246777777889999999999975

>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha, immunoglobulin superfamily, transmembrane, phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo sapiens} PDB: 2jjt_C* 2vsc_A*

Probab=98.90  E-value=1.6e-09  Score=56.00  Aligned_cols=68  Identities=15%  Similarity=0.304  Sum_probs=49.6

Q ss_pred             CccEEEEEEeccCCC-----CeeEEeeCCccCCC-------------------------CCCCeEEEecCCC-CCCeEEE
Q psy12725          2 LALKFFTCKYEGNPV-----KTISWMKDGKPVPD-------------------------HNEPVFRIDSVRK-EDKGMYQ   50 (119)
Q Consensus         2 g~~~~l~c~~~~~~~-----~~v~w~~~~~~~~~-------------------------~~~~~l~~~~~~~-~d~g~y~   50 (119)
                      |+.|+|.|.+...+.     -.|.|.+++..+..                         ..+.+|.|.+++. +|.|.|+
T Consensus        16 n~~vtLpC~l~~~~~~~~~~m~V~W~~~~~~i~~~~G~~~~~~q~~~~~~a~l~~~~l~~GnaSL~i~~v~~~sD~G~Yt   95 (127)
T 2jjs_C           16 NDTVVIPCFVTNMEAQNTTEVYVKWKFKGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDKSDAVSHTGNYT   95 (127)
T ss_dssp             CSEEEECCBBSSCCCSSGGGEEEEEEETTEEEEEEEGGGTEEECCGGGTTCBCCGGGGGGTBCCEEEEHHHHHTSCEEEE
T ss_pred             CCCEEEEEEeCCcCCCCcceEEEEEEECCeEeEeeCCceeeccccccccceEechhhhccCcEEEEEcccccccCCcEEE
Confidence            789999999975332     36999987754321                         1237899999998 6999999


Q ss_pred             EEEEcCCCCceeEeeEEEe
Q psy12725         51 CVIRNEQESAQASGELKLG   69 (119)
Q Consensus        51 C~~~~~~~~~~~~~~~~v~   69 (119)
                      |.+..........+.+.+.
T Consensus        96 C~v~~~~~~~~~~i~Lkv~  114 (127)
T 2jjs_C           96 CEVTELTREGETIIELKYR  114 (127)
T ss_dssp             EEEEETTEEEEEEEEEEEC
T ss_pred             EEEEeCCceEEEEEEEEEE
Confidence            9999876545555555553

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.90  E-value=7.6e-10  Score=62.37  Aligned_cols=58  Identities=16%  Similarity=0.285  Sum_probs=45.0

Q ss_pred             CccEEEEEEeccC-CCC-eeEEeeCCccCCCC-------C-----CCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          2 LALKFFTCKYEGN-PVK-TISWMKDGKPVPDH-------N-----EPVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         2 g~~~~l~c~~~~~-~~~-~v~w~~~~~~~~~~-------~-----~~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      |+.++|.|.+.+. |.+ .+.|++++..+...       .     .+.|.|..+...| |.|+|.+.|..+..
T Consensus       142 g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~  213 (222)
T 1q9r_B          142 NSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST  213 (222)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred             CCcEEEEEEEccEECCCCEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCC
Confidence            7899999999885 877 99999998765320       1     1246777888888 99999999986544

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.90  E-value=2.4e-09  Score=60.18  Aligned_cols=57  Identities=14%  Similarity=0.271  Sum_probs=41.7

Q ss_pred             CccEEEEEEecc-CCCC-eeEEeeCCccCCC---C----CC-----CeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          2 LALKFFTCKYEG-NPVK-TISWMKDGKPVPD---H----NE-----PVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         2 g~~~~l~c~~~~-~~~~-~v~w~~~~~~~~~---~----~~-----~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      |+.+.|.|.+.+ .|.+ .|.|++++..+..   .    .+     ..|.|.. ...|.|.|+|.+.|..+.
T Consensus       139 g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~-~~~d~g~Y~C~a~n~~~~  209 (219)
T 1c1e_H          139 NSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPS-SPRPSETVTCNVAHPASS  209 (219)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEES-SSTTTSCCEEEEEEGGGT
T ss_pred             CCeEEEEEEcccccCCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEEec-ccCCCCEEEEEEEeCCCC
Confidence            789999999998 7888 9999999875421   0    11     2466643 344669999999997644

>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A

Probab=98.90  E-value=3.2e-08  Score=55.52  Aligned_cols=101  Identities=10%  Similarity=0.178  Sum_probs=60.5

Q ss_pred             CCccEEEEEEecc-CCCCeeEEeeCC--cc---C-C--------C---------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEG-NPVKTISWMKDG--KP---V-P--------D---------HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~-~~~~~v~w~~~~--~~---~-~--------~---------~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|.+.+ .....+.|||..  ..   + .        .         .....|.|.+++.+|+|.|.|.+.+.
T Consensus        13 ~G~~v~L~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~   92 (206)
T 1kgc_D           13 EEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYCILPLA   92 (206)
T ss_dssp             TTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEEEECCCC
T ss_pred             CCCCEEEEEEEcCCCCCccEEEEEECCCCCcEEEEEECCCCccCCCEEEEEcCCCCEEEEEECCCCcccCccEEEEEecc
Confidence            4899999999976 334579999732  11   1 0        0         01247899999999999999998763


Q ss_pred             C------CCceeEeeEEEeeec--CCCeeeecCCccccCCCCcEEEEeEEccC-CCCeE
Q psy12725         57 Q------ESAQASGELKLGGRF--DPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEI  106 (119)
Q Consensus        57 ~------~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~  106 (119)
                      .      ........+.|....  ..|.+.....     ..+.+.|.|.+.+. |.+.+
T Consensus        93 ~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~~~-----~~~~v~L~C~~~g~~P~~~V  146 (206)
T 1kgc_D           93 GGTSYGKLTFGQGTILTVHPNIQNPDPAVYQLRD-----SKSSDKSVCLFTDFDSQTNV  146 (206)
T ss_dssp             STTCCCCCCCCCCEEEEEECCCSSCCCEEEECCC-----CTTCCCEEEEEESCCTTCCC
T ss_pred             cCCCcccceECCCEEEEEeCCCCCCCCeEEeecC-----CCCCeEEEEEeeceeccccc
Confidence            1      111223345554321  2244333221     12378999998774 55544

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.89  E-value=5.4e-09  Score=60.16  Aligned_cols=57  Identities=18%  Similarity=0.233  Sum_probs=43.2

Q ss_pred             CCccEEEEEEeccCCCC-eeEEeeC--CccCCC---------------------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVK-TISWMKD--GKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~-~v~w~~~--~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|.+.+.+.+ .+.|+|.  +..+..                     .....|.|.+++.+|+|.|.|.+.+.
T Consensus       155 ~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~  234 (257)
T 3gkz_A          155 PGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSS  234 (257)
T ss_dssp             TTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccC
Confidence            48999999999987776 8999984  222210                     01235999999999999999999875


Q ss_pred             C
Q psy12725         57 Q   57 (119)
Q Consensus        57 ~   57 (119)
                      .
T Consensus       235 ~  235 (257)
T 3gkz_A          235 F  235 (257)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=98.89  E-value=6.6e-09  Score=55.09  Aligned_cols=69  Identities=13%  Similarity=0.250  Sum_probs=46.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccCC------------C---------CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPVP------------D---------HNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~~------------~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.|+|.|.+.......+.|||..  ..+.            .         .....|.|.+++.+|+|.|+|.+.+..
T Consensus        14 ~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~l~~~DsG~Y~C~~~~~~   93 (143)
T 3u6r_L           14 PGERATLSCRASQSVNKYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISNLEPEDFAVYYCQQRSDW   93 (143)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEEEECSSB
T ss_pred             CCCCEEEEEEECCCCceeeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEccCCEEEEEEccCcccCCEEEEEEEecCC
Confidence            4899999999987666789999842  2110            0         022468999999999999999987653


Q ss_pred             CCceeEeeEEEe
Q psy12725         58 ESAQASGELKLG   69 (119)
Q Consensus        58 ~~~~~~~~~~v~   69 (119)
                      ........+.|.
T Consensus        94 ~~fg~gt~L~V~  105 (143)
T 3u6r_L           94 VTFGGGTKVEIK  105 (143)
T ss_dssp             CEECCCEEEEEC
T ss_pred             CEECCCEEEEEC
Confidence            122223445543

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=98.89  E-value=2.5e-08  Score=49.39  Aligned_cols=60  Identities=15%  Similarity=0.284  Sum_probs=46.4

Q ss_pred             CCccEEEEEEecc-CCCCeeEEeeCC----ccCCC------CCCC----eEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          1 MLALKFFTCKYEG-NPVKTISWMKDG----KPVPD------HNEP----VFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         1 ~g~~~~l~c~~~~-~~~~~v~w~~~~----~~~~~------~~~~----~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      .|+++.|.|.+.+ .+.|.|+|-|-+    ..+..      +.+.    .|.+..+...|.|.|.|.+....+..
T Consensus        25 ~G~~f~leCpv~yc~~rP~VtWcKln~~~c~~L~~~~q~w~E~~N~s~fvLhf~~V~~sDsGsYRCsAn~~sg~i   99 (120)
T 2aw2_A           25 AGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLI   99 (120)
T ss_dssp             TTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             cCCeEEEEccEEeccCCCceEEEecCCceEEECccccccceecCCeeEEEEEEeeeeEcCCcceEEEeeCCCCcE
Confidence            4899999999988 478999999844    33432      1223    68889999999999999999875443

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=98.89  E-value=1.7e-08  Score=59.86  Aligned_cols=51  Identities=20%  Similarity=0.264  Sum_probs=42.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|.+.. +. .|.|.+++.......+..|.|..+...|.|.|+|.+
T Consensus        20 ~G~~v~l~C~~~~-~~-~i~W~~~~~~~~~~~~~~L~i~~~~~~d~G~YtC~~   70 (306)
T 3d85_D           20 PGEMVVLTCDTPE-ED-GITWTLDQSSEVLGSGKTLTIQVKEFGDAGQYTCHK   70 (306)
T ss_dssp             CCEEEEEECSSSC-CS-SCEEEETTCCCCCEESSEEEEEECSGGGCEEEEEEE
T ss_pred             cCCcEEEECCCCC-CC-cCEEEECCccccCCCCCEEEEEecCcCCCceEEEee
Confidence            4899999998874 33 799999988544345678999999999999999998

>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C* 3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C* 3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C* 3sdc_C* ...

Probab=98.89  E-value=1e-08  Score=58.43  Aligned_cols=101  Identities=16%  Similarity=0.300  Sum_probs=61.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccCC-----------------------CCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPVP-----------------------DHNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~~-----------------------~~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.+.+.....+.|||..  ..+.                       ......|.|.+++.+|+|.|.|.+.+
T Consensus        15 ~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~   94 (229)
T 2q86_A           15 QGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKDAKHSTLHITATLLDDTATYFCVVGD   94 (229)
T ss_dssp             TTCCEEEEEEECCSCCSCEEEEEECTTCCEEEEEEECSSEEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEESC
T ss_pred             cCCCEEEEEEECCCCCcEEEEEEECCCCCcEEEEEEcCCCCcccCCCEEEEEcCCCCEEEEEEcccCcccCccEEEEEEe
Confidence            4899999999976655679999732  1110                       01124789999999999999999875


Q ss_pred             CCC-CceeEeeEEEeeec--CCCeeeecCCccccCCCCcEEEEeEEcc-CCCCeE
Q psy12725         56 EQE-SAQASGELKLGGRF--DPPVIKESFSDETLNPGPNYYFKCIASG-NPTPEI  106 (119)
Q Consensus        56 ~~~-~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~~  106 (119)
                      ... .......+.|....  .+|.+.....     ....++|.|.+.+ .|.+.+
T Consensus        95 ~~~~~~g~gt~L~V~~~~~~~~P~V~~~~~-----~~~~~tL~Cl~~gf~P~p~V  144 (229)
T 2q86_A           95 RGSALFGSGTQLIVIPYIQNPEPAVYQLKD-----PRSQDSTLCLFTDFDSQINV  144 (229)
T ss_dssp             GGGCEECCCEEEEEECCCSSCCCEEEEEEC-----TTSTTCEEEEEEEECTTCCC
T ss_pred             cCcccccCCEEEEEECcCCCCCCEEEEccC-----CCCCeEEEEEECCcCcCCcc
Confidence            321 11122344543321  2333333211     1227889999877 355544

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=98.88  E-value=5.9e-09  Score=52.87  Aligned_cols=56  Identities=18%  Similarity=0.270  Sum_probs=42.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCc--c---C-C--------CC---------CCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGK--P---V-P--------DH---------NEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~--~---~-~--------~~---------~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|.+.+.+.+.+.||+...  .   + .        ..         ....|.|.+++.+|+|.|.|.+.+.
T Consensus        18 ~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   96 (111)
T 1i3g_L           18 VGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYSS   96 (111)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSS
T ss_pred             CCCCEEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            48999999999876677899998531  1   1 0        00         1236899999999999999999865

>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=98.88  E-value=2.5e-09  Score=50.85  Aligned_cols=59  Identities=12%  Similarity=0.286  Sum_probs=40.0

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL   66 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~   66 (119)
                      |+.|.|+|      .+.|.|++++..+.......|.+......+.|.|.|.+.+..+...+...|
T Consensus         9 g~~V~LtC------~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~~~~~~~~~s~LqV   67 (79)
T 1xiw_B            9 EDRVFVNC------NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKESTVQV   67 (79)
T ss_dssp             TTEEEEEC------SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC--------CEEEEE
T ss_pred             CCEEEEEc------CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecCCCCCCcccEEEEE
Confidence            78999999      356999999887655557788888888889999999888765543333333

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=98.88  E-value=7.8e-09  Score=53.12  Aligned_cols=56  Identities=21%  Similarity=0.558  Sum_probs=42.3

Q ss_pred             CCccEEEEEEeccCC----CCeeEEeeCC----ccCC-------------------CCCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNP----VKTISWMKDG----KPVP-------------------DHNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~----~~~v~w~~~~----~~~~-------------------~~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|.+...+    ...+.|||..    ..+.                   .....+|.|.+++.+|+|.|.|.+
T Consensus        21 ~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~g~~~~~~~~~~~~R~~~~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v  100 (120)
T 3noi_A           21 EGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRV  100 (120)
T ss_dssp             TTSCEEECCEECCCTTSCCCEEEEEEESSCSTTCBCCTTCTTTTTCEECCCHHHHHTTCBCCEEESSCCGGGCEEEEEEE
T ss_pred             cCCCEEEEeeecCCCCCCceeEEEEEeccCCCCceecccccccCCcEEeecccccccCCcEEEEEecCChhhCEEEEEEE
Confidence            489999999997654    4579999864    2221                   112347999999999999999998


Q ss_pred             EcC
Q psy12725         54 RNE   56 (119)
Q Consensus        54 ~~~   56 (119)
                      ...
T Consensus       101 ~~~  103 (120)
T 3noi_A          101 EVL  103 (120)
T ss_dssp             EET
T ss_pred             EEC
Confidence            854

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=98.88  E-value=1.4e-08  Score=52.84  Aligned_cols=58  Identities=16%  Similarity=0.323  Sum_probs=42.1

Q ss_pred             CCccEEEEEEeccCC-CCeeEEeeC--CccCC------------------------CCCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNP-VKTISWMKD--GKPVP------------------------DHNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~-~~~v~w~~~--~~~~~------------------------~~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|.+.+.. ...+.||+.  +....                        ......|.|.+++.+|+|.|.|.+
T Consensus        15 ~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~   94 (129)
T 3rrq_A           15 EGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGA   94 (129)
T ss_dssp             TTSCEEEEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCCChhHCEEEEEEE
Confidence            489999999997654 457999973  21110                        001246899999999999999999


Q ss_pred             EcCCC
Q psy12725         54 RNEQE   58 (119)
Q Consensus        54 ~~~~~   58 (119)
                      .+...
T Consensus        95 ~~~~~   99 (129)
T 3rrq_A           95 ISLAP   99 (129)
T ss_dssp             EECGG
T ss_pred             EecCC
Confidence            87643

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=98.87  E-value=7.5e-09  Score=53.74  Aligned_cols=57  Identities=21%  Similarity=0.362  Sum_probs=42.6

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeC--CccCC---------------CCCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKD--GKPVP---------------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~--~~~~~---------------~~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.++|.|.+.+.  +...+.|||.  +....               ......|.|.+++.+|+|.|+|.+.+..
T Consensus        14 ~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~   89 (126)
T 3moq_A           14 TGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYVF   89 (126)
T ss_dssp             TTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEEE
T ss_pred             CCCCEEEEEEeecCccCCceEEEEEeCCCCCceEEEEeCCcEEEEEeCCCCEEEEEECcCChHhCEEEEEEEEEcC
Confidence            48999999999765  4567999983  22210               0123579999999999999999987753

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.87  E-value=5.6e-09  Score=59.72  Aligned_cols=68  Identities=21%  Similarity=0.494  Sum_probs=44.7

Q ss_pred             CccEEEEEEecc-CCCC-eeEEeeCCccCCC----------------CC-----CCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          2 LALKFFTCKYEG-NPVK-TISWMKDGKPVPD----------------HN-----EPVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         2 g~~~~l~c~~~~-~~~~-~v~w~~~~~~~~~----------------~~-----~~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      |+.+.|.|.+.+ .|.+ .+.|++++..+..                ..     ...|.+......|.|.|+|.+.|..+
T Consensus       133 ~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~  212 (248)
T 3pv7_A          133 ENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASL  212 (248)
T ss_dssp             ---CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTC
T ss_pred             CCCcEEEEEEccEECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCC
Confidence            567789999998 6888 9999999864321                11     13466666777889999999999876


Q ss_pred             CceeEeeEEEe
Q psy12725         59 SAQASGELKLG   69 (119)
Q Consensus        59 ~~~~~~~~~v~   69 (119)
                      .......+.+.
T Consensus       213 ~~~~~~~v~l~  223 (248)
T 3pv7_A          213 HTPLRSNFTLT  223 (248)
T ss_dssp             SSCEEEEECC-
T ss_pred             CCCcEEEEEEE
Confidence            64444444443

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=98.86  E-value=1.6e-08  Score=53.08  Aligned_cols=55  Identities=18%  Similarity=0.358  Sum_probs=42.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC---CccCC-------------CCCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD---GKPVP-------------DHNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~---~~~~~-------------~~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|.+.+. ...+.|||.   +..+.             ......|.|.+++.+|+|.|+|.+.+.
T Consensus        32 ~G~svtL~C~~s~~-~~~v~Wyrq~~~g~~~~~l~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~  102 (134)
T 3kg5_A           32 RGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQQKCN  102 (134)
T ss_dssp             TTCCEEEEEECCCT-TCCCEEEEESSSSSCCEECCCCTTTEEEEECSSEEEEEECSCCTTTCEEEEEEEECT
T ss_pred             CCCCEEEEEEECCC-CceEEEEEECCCCCCcEEEEEECCeEEEEccCCEEEEEECCCCcCcCEEEEEEEEcC
Confidence            48999999999764 467999986   33221             012357999999999999999999875

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.86  E-value=1.2e-08  Score=59.47  Aligned_cols=56  Identities=21%  Similarity=0.320  Sum_probs=43.1

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--ccC-----------------CCC-----------CCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KPV-----------------PDH-----------NEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~~-----------------~~~-----------~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.++|.|.+.+.+  .+.+.|+|++  ...                 ...           ....|.|.+++.+|.|.
T Consensus       148 ~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~  227 (276)
T 3auv_A          148 PGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAV  227 (276)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEE
T ss_pred             CCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEE
Confidence            389999999998765  5899999963  111                 000           11379999999999999


Q ss_pred             EEEEEEcC
Q psy12725         49 YQCVIRNE   56 (119)
Q Consensus        49 y~C~~~~~   56 (119)
                      |.|.+.|.
T Consensus       228 Y~C~a~n~  235 (276)
T 3auv_A          228 YYCARFVF  235 (276)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEEcC
Confidence            99999997

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.85  E-value=2.5e-09  Score=59.96  Aligned_cols=57  Identities=16%  Similarity=0.448  Sum_probs=41.1

Q ss_pred             CccEEEEEEecc-CCCC-eeEEeeCCccCCCC--------CC------CeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          2 LALKFFTCKYEG-NPVK-TISWMKDGKPVPDH--------NE------PVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         2 g~~~~l~c~~~~-~~~~-~v~w~~~~~~~~~~--------~~------~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      |+.+.|.|.+.+ .|.+ .+.|++++..+...        ..      ..|.+......|.|.|+|.+.|..+
T Consensus       136 ~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~  208 (218)
T 3s96_B          136 ENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGD  208 (218)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTE
T ss_pred             CCcEEEEEEECcccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCC
Confidence            568999999987 4666 89999999877431        01      1255666666789999999999863

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.85  E-value=1.1e-08  Score=58.88  Aligned_cols=57  Identities=18%  Similarity=0.370  Sum_probs=43.1

Q ss_pred             CCccEEEEEEeccCCC-CeeEEeeC--CccCC------------CC---------CCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPV-KTISWMKD--GKPVP------------DH---------NEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~-~~v~w~~~--~~~~~------------~~---------~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|.+.+.+. +.+.|||.  +..+.            ..         ....|.|.+++.+|+|.|.|.+.+.
T Consensus       163 ~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  242 (256)
T 3juy_B          163 PGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGA  242 (256)
T ss_dssp             TTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCS
T ss_pred             CCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeC
Confidence            4899999999988765 89999983  22211            00         1235999999999999999999875


Q ss_pred             C
Q psy12725         57 Q   57 (119)
Q Consensus        57 ~   57 (119)
                      .
T Consensus       243 ~  243 (256)
T 3juy_B          243 S  243 (256)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=98.85  E-value=3.2e-09  Score=53.80  Aligned_cols=56  Identities=21%  Similarity=0.369  Sum_probs=41.8

Q ss_pred             CCccEEEEEEeccCC----CCeeEEeeCC--ccC----C--------CC---------CCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNP----VKTISWMKDG--KPV----P--------DH---------NEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~----~~~v~w~~~~--~~~----~--------~~---------~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|.+.+.+    .+.+.|||..  ...    .        ..         ....|.|.+++.+|+|.|.|.+
T Consensus        15 ~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~   94 (111)
T 1j05_L           15 LGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATYYCQQ   94 (111)
T ss_dssp             TTSCEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEccCCEEEEEECCCCcccCEEEEEEE
Confidence            489999999998765    4679999853  211    0        00         1236999999999999999999


Q ss_pred             EcC
Q psy12725         54 RNE   56 (119)
Q Consensus        54 ~~~   56 (119)
                      .+.
T Consensus        95 ~~~   97 (111)
T 1j05_L           95 TNE   97 (111)
T ss_dssp             CSS
T ss_pred             ecC
Confidence            864

>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D

Probab=98.84  E-value=4.2e-08  Score=55.25  Aligned_cols=101  Identities=13%  Similarity=0.179  Sum_probs=60.8

Q ss_pred             CCccEEEEEEeccCCCC-eeEEeeCC--ccCC-------------C-----------CCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVK-TISWMKDG--KPVP-------------D-----------HNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~-~v~w~~~~--~~~~-------------~-----------~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|.+.+.... .+.|||..  ..+.             .           .....|.|.+++.+|.|.|.|.+
T Consensus        17 ~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~   96 (211)
T 2ak4_D           17 EKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCAL   96 (211)
T ss_dssp             TTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             cCCCEEEEEEecCCcCceeEEEEEECCCCccEEEEEECCCcCccCcCCCEEEEEcCCCCEEEEEECccccccCceEEEEE
Confidence            48999999999764434 79999732  1110             0           01247899999999999999999


Q ss_pred             EcCC--C--CceeEeeEEEeeec--CCCeeeecCCccccCCCCcEEEEeEEccC-CCCeE
Q psy12725         54 RNEQ--E--SAQASGELKLGGRF--DPPVIKESFSDETLNPGPNYYFKCIASGN-PTPEI  106 (119)
Q Consensus        54 ~~~~--~--~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~  106 (119)
                      .+..  .  .......+.|....  ..|.+.....     ....+.|.|.+.+. |.+.+
T Consensus        97 ~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~~~-----~~~~vtL~Cl~~gf~P~~~v  151 (211)
T 2ak4_D           97 SGFYNTDKLIFGTGTRLQVFPNIQNPDPAVYQLRD-----SKSSDKSVCLFTDFDSQTNV  151 (211)
T ss_dssp             ECSBTTSCCEECCCEEEEEECCCSSCCCEEEEEBC-----CSSSCCEEEEEESCCTTCCC
T ss_pred             EcCCCcceeeECCCEEEEEeCcCCCCCCEEEEccC-----CCCceEEEEEeeeecCCccc
Confidence            8642  1  11122345444321  2344333221     12378999998774 55544

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.84  E-value=5.2e-09  Score=60.07  Aligned_cols=58  Identities=14%  Similarity=0.318  Sum_probs=44.1

Q ss_pred             CccEEEEEEeccC-CCC-eeEEeeCCccCCCC----------CC------CeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          2 LALKFFTCKYEGN-PVK-TISWMKDGKPVPDH----------NE------PVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         2 g~~~~l~c~~~~~-~~~-~v~w~~~~~~~~~~----------~~------~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      |+.++|.|.+.+. |.+ .|.|++++..+...          ..      ..|.|..+..+|.|.|+|.+.|....
T Consensus       165 g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  240 (252)
T 3bkj_L          165 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  240 (252)
T ss_dssp             HTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             CCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence            6789999999874 543 79999998765322          11      23788888888999999999997644

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.83  E-value=8.5e-10  Score=61.64  Aligned_cols=57  Identities=16%  Similarity=0.344  Sum_probs=43.7

Q ss_pred             CccEEEEEEeccC--CCCeeEEeeCCccCCCC---------CC------CeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          2 LALKFFTCKYEGN--PVKTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         2 g~~~~l~c~~~~~--~~~~v~w~~~~~~~~~~---------~~------~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      |+.+.|.|.+.+.  +.+.+.|++++..+...         ..      ..|.|..+...|.|.|+|.+.+..+
T Consensus       126 g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~  199 (211)
T 3tv3_L          126 ANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGS  199 (211)
T ss_dssp             TTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTE
T ss_pred             CCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCC
Confidence            7899999999875  35789999999876431         11      3466766777789999999999863

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.82  E-value=1.3e-09  Score=61.71  Aligned_cols=57  Identities=14%  Similarity=0.314  Sum_probs=38.9

Q ss_pred             CccEEEEEEeccC-CCC-eeEEeeCCccCCCC----------CC------CeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          2 LALKFFTCKYEGN-PVK-TISWMKDGKPVPDH----------NE------PVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         2 g~~~~l~c~~~~~-~~~-~v~w~~~~~~~~~~----------~~------~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      |+.++|.|.+.+. |.+ .+.|++++..+...          ..      ..|.|.....+|.|.|+|.+.|...
T Consensus       149 g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          149 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             TTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             CCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            7889999999875 443 79999998765322          11      2467777778899999999998753

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=98.82  E-value=2.9e-08  Score=52.81  Aligned_cols=56  Identities=16%  Similarity=0.315  Sum_probs=42.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--cc---C-CC--------C---------CCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KP---V-PD--------H---------NEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~---~-~~--------~---------~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|.+.+.+.+.+.|||..  ..   + ..        .         ....|.|.+++.+|+|.|+|.+.+.
T Consensus        30 ~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~  108 (146)
T 2yc1_B           30 PGERATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGSGTDFTLTISSLEPEDFAIYYCQQYRY  108 (146)
T ss_dssp             TTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSS
T ss_pred             cCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEecCCCEEEEEECCCCHHHCEEEEEEEecC
Confidence            4899999999987666789999843  11   1 00        0         1236899999999999999999875

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.82  E-value=4.4e-09  Score=58.75  Aligned_cols=58  Identities=16%  Similarity=0.285  Sum_probs=43.8

Q ss_pred             CccEEEEEEeccC-CCC-eeEEeeCCccCCCC-------C-----CCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          2 LALKFFTCKYEGN-PVK-TISWMKDGKPVPDH-------N-----EPVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         2 g~~~~l~c~~~~~-~~~-~v~w~~~~~~~~~~-------~-----~~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      |+.+.|.|.+.+. |.+ .+.|++++..+...       .     ...|.|......| |.|+|.+.|..+..
T Consensus       133 g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~  204 (210)
T 3d9a_H          133 NSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST  204 (210)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTE
T ss_pred             CCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCc
Confidence            7899999999886 777 99999988753210       0     1347777777766 99999999986544

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.82  E-value=2.4e-08  Score=56.38  Aligned_cols=60  Identities=12%  Similarity=0.205  Sum_probs=44.2

Q ss_pred             CccEEEEEEeccC-CCC-eeEEee-CCccCCC--------CC-----CCeEEEecCCC--CCCeEEEEEEEcCCCCce
Q psy12725          2 LALKFFTCKYEGN-PVK-TISWMK-DGKPVPD--------HN-----EPVFRIDSVRK--EDKGMYQCVIRNEQESAQ   61 (119)
Q Consensus         2 g~~~~l~c~~~~~-~~~-~v~w~~-~~~~~~~--------~~-----~~~l~~~~~~~--~d~g~y~C~~~~~~~~~~   61 (119)
                      |+.++|.|.+.+. |.+ .+.|++ ++..+..        ..     .+.|.+.....  .|.|.|+|.+.|..+...
T Consensus       141 g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~  218 (223)
T 1dee_B          141 SSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKE  218 (223)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEE
T ss_pred             CCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCc
Confidence            7889999999876 766 999999 8877642        01     12356655555  678999999999875543

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=98.82  E-value=1.4e-08  Score=66.34  Aligned_cols=94  Identities=23%  Similarity=0.323  Sum_probs=62.6

Q ss_pred             CCccEEEEEEeccCCCCeeE-Ee--eCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCC-ceeEeeEE
Q psy12725          1 MLALKFFTCKYEGNPVKTIS-WM--KDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQES-AQASGELK   67 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~-w~--~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~-~~~~~~~~   67 (119)
                      .|+.+.|.|.+.+.|.+.+. |+  +++..+...         ....|.|.++...|.|.|.|.+.|..+. ......+.
T Consensus       178 ~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~  257 (731)
T 2v5y_A          178 AGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELV  257 (731)
T ss_dssp             TTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEE
Confidence            48899999999999998888 77  677654221         1257999999999999999999998765 33344455


Q ss_pred             EeeecCCCeeeecCCccccCCCCcEEEEeEE
Q psy12725         68 LGGRFDPPVIKESFSDETLNPGPNYYFKCIA   98 (119)
Q Consensus        68 v~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~   98 (119)
                      +..   +|.+...+... ......+.+.|..
T Consensus       258 V~~---~P~~~~~p~~~-~~~~~~v~l~w~~  284 (731)
T 2v5y_A          258 VKE---PPVPIAPPQLA-SVGATYLWIQLNA  284 (731)
T ss_dssp             EEC---CCCBSSCCEEE-EECSSCEEEECCC
T ss_pred             Eec---CCCCCCCccee-ccCCceEEEEeCC
Confidence            432   33322222111 1234567777764

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=98.82  E-value=2.5e-08  Score=50.56  Aligned_cols=54  Identities=15%  Similarity=0.346  Sum_probs=41.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--cc---C--------------------CCCCCCeEEEecCCCCCCeEEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KP---V--------------------PDHNEPVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~---~--------------------~~~~~~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      .|+.|+|.|.+.+.+...+.|||..  ..   +                    .......|.|.+++.+|+|.|.|.+.
T Consensus        14 ~G~~v~L~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~   92 (112)
T 2z35_A           14 EEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYYCALS   92 (112)
T ss_dssp             TTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCSTTCSEEEEEEE
T ss_pred             CCCCEEEEEEECCCCCCeEEEEEECCCCCcEEeEEEecccCCccCCCEEEEEcCCCCEEEEEECCCChhhCEEEEEEEE
Confidence            4899999999977666789999842  11   0                    00123579999999999999999998

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X*

Probab=98.81  E-value=4.8e-08  Score=49.82  Aligned_cols=56  Identities=21%  Similarity=0.409  Sum_probs=40.8

Q ss_pred             CCccEEEEEEecc-C-CCCeeEEeeCC----ccCC------C------------------CCCCeEEEecCCCCCCeEEE
Q psy12725          1 MLALKFFTCKYEG-N-PVKTISWMKDG----KPVP------D------------------HNEPVFRIDSVRKEDKGMYQ   50 (119)
Q Consensus         1 ~g~~~~l~c~~~~-~-~~~~v~w~~~~----~~~~------~------------------~~~~~l~~~~~~~~d~g~y~   50 (119)
                      .|+.|+|.|.... . ....+.||+..    ....      .                  ....+|.|.+++.+|+|.|.
T Consensus        10 ~G~~vtL~C~~~~~~~~~~~v~W~r~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~   89 (116)
T 3bia_X           10 LGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYC   89 (116)
T ss_dssp             TTSCEEECCBCTTCCTTTCEEEEEESSCCSSSCTTEEEEECSSSEEEESSTTEEECSCGGGTBCCEEECSCCGGGCEEEE
T ss_pred             eCCcEEEEEEeeCCCCCeEEEEEeeecCCCCCCceEEEEECCcccccccCceEEEeccCCCCEEEEEEccCChhHCEEEE
Confidence            4899999999862 2 33469999865    2110      0                  02257999999999999999


Q ss_pred             EEEEcC
Q psy12725         51 CVIRNE   56 (119)
Q Consensus        51 C~~~~~   56 (119)
                      |.+...
T Consensus        90 C~v~~~   95 (116)
T 3bia_X           90 CRIEVP   95 (116)
T ss_dssp             EEEECS
T ss_pred             EEEEcC
Confidence            999864

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.80  E-value=3.4e-08  Score=55.61  Aligned_cols=58  Identities=12%  Similarity=0.296  Sum_probs=44.4

Q ss_pred             CCccEEEEEEecc-CCC--CeeEEeeCCccCC---------CCCC-----CeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          1 MLALKFFTCKYEG-NPV--KTISWMKDGKPVP---------DHNE-----PVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         1 ~g~~~~l~c~~~~-~~~--~~v~w~~~~~~~~---------~~~~-----~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      .|+.++|.|.+.+ .|.  +.+.|++++..+.         ....     +.|.|......|.|.|+|.+.+..+
T Consensus       137 ~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~  211 (221)
T 3m8o_H          137 PDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTN  211 (221)
T ss_dssp             CTTEEEEEEEEEEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTS
T ss_pred             cCCCEEEEEEEEeeECCCCEEEEEEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCC
Confidence            3789999999988 565  4899999987652         1111     2477888888899999999999764

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=98.80  E-value=2.8e-08  Score=59.17  Aligned_cols=66  Identities=18%  Similarity=0.218  Sum_probs=49.1

Q ss_pred             CCccEEEEEEeccCC-CCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNP-VKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~-~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.|+|.|.+.+.+ .+.|.|++++..+...      ....|.|.+++..|.|.|.|..   .+.......+.+.
T Consensus        20 ~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~---~g~~~~~~~L~V~   92 (325)
T 1n26_A           20 PGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYR---AGRPAGTVHLLVD   92 (325)
T ss_dssp             TTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEES---SSSCSCEEEEEEC
T ss_pred             CCCcEEEEeCCCCCCCCceEEEEECCccCCccccccccccceEEecccchhhCeEeEEEe---CCEEeeeEEEEec
Confidence            489999999988654 6799999987654221      2467999999999999999992   3444445555554

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=98.79  E-value=1.5e-08  Score=51.64  Aligned_cols=68  Identities=15%  Similarity=0.196  Sum_probs=46.3

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeCCc-------cC--------C--C-----------CCCCeEEEecCCCCCCeEEE
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKDGK-------PV--------P--D-----------HNEPVFRIDSVRKEDKGMYQ   50 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~~~-------~~--------~--~-----------~~~~~l~~~~~~~~d~g~y~   50 (119)
                      .|+.|+|.|.....  ....+.|+|...       .+        .  .           ....+|.|.+++.+|+|.|.
T Consensus        11 ~G~~v~L~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~   90 (115)
T 2or7_A           11 AGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGDGGPYC   90 (115)
T ss_dssp             TTSCEEECCBCCHHHHCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGGCEEEE
T ss_pred             cCCCEEEEEEeecCCCCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecCccCCeEEEEEccCCHHHCEEEE
Confidence            48999999998643  345799998641       00        0  0           12357999999999999999


Q ss_pred             EEEEcCCCCceeEeeEEEee
Q psy12725         51 CVIRNEQESAQASGELKLGG   70 (119)
Q Consensus        51 C~~~~~~~~~~~~~~~~v~~   70 (119)
                      |.+.......  ...+.+.+
T Consensus        91 C~v~~~~~~~--~~~v~L~V  108 (115)
T 2or7_A           91 CVVEIPGAFH--FVDYMLEV  108 (115)
T ss_dssp             EEECCTTSCE--EEEEEEEE
T ss_pred             EEEECCCcee--EEEEEEEE
Confidence            9998764333  33444433

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.79  E-value=3e-08  Score=56.38  Aligned_cols=56  Identities=20%  Similarity=0.330  Sum_probs=42.2

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeC--CccCC-------------------C---------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKD--GKPVP-------------------D---------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~--~~~~~-------------------~---------~~~~~l~~~~~~~~d~g~   48 (119)
                      .|+.++|.|.+.+.+  .+.+.|+|+  +..+.                   .         .....|.|.+++.+|.|.
T Consensus       133 ~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~  212 (240)
T 1moe_A          133 PGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAV  212 (240)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEE
Confidence            389999999998876  458999995  22110                   0         112469999999999999


Q ss_pred             EEEEEEcC
Q psy12725         49 YQCVIRNE   56 (119)
Q Consensus        49 y~C~~~~~   56 (119)
                      |.|.+.+.
T Consensus       213 Y~C~a~~~  220 (240)
T 1moe_A          213 YYCAPFGY  220 (240)
T ss_dssp             EEEEECST
T ss_pred             EEEEEEec
Confidence            99999853

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=98.79  E-value=9.5e-09  Score=52.32  Aligned_cols=56  Identities=18%  Similarity=0.335  Sum_probs=41.5

Q ss_pred             CCccEEEEEEeccCC------CCeeEEeeCC--ccCC------------CC---------CCCeEEEecCCCCCCeEEEE
Q psy12725          1 MLALKFFTCKYEGNP------VKTISWMKDG--KPVP------------DH---------NEPVFRIDSVRKEDKGMYQC   51 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~------~~~v~w~~~~--~~~~------------~~---------~~~~l~~~~~~~~d~g~y~C   51 (119)
                      .|+.|+|.|.+.+.+      .+.+.|||..  ....            ..         ....|.|.+++.+|+|.|.|
T Consensus        15 ~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C   94 (114)
T 1eeq_A           15 LGERATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYC   94 (114)
T ss_dssp             TTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CCCeEEEEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEeecCCEEEEEECCCCcccCEEEEE
Confidence            489999999998765      2679999853  1110            00         12368999999999999999


Q ss_pred             EEEcC
Q psy12725         52 VIRNE   56 (119)
Q Consensus        52 ~~~~~   56 (119)
                      .+.+.
T Consensus        95 ~~~~~   99 (114)
T 1eeq_A           95 QQYYS   99 (114)
T ss_dssp             EECSS
T ss_pred             EEeeC
Confidence            99864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	119
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-10
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-04
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	5e-10
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	7e-04
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	7e-10
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	4e-04
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	3e-08
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-04
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	7e-08
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	9e-08
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	5e-04
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-07
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-05
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	1e-07
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	6e-04
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-07
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-07
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	3e-05
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	1e-06
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	1e-06
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-06
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	5e-05
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	3e-06
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-06
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	4e-06
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	4e-06
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	6e-06
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	1e-05
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	1e-05
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	1e-05
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	3e-05
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	5e-05
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	6e-05
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	0.002
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	8e-05
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	1e-04
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	2e-04
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	3e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	5e-04
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	0.001
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	0.002
d1neua_	119	b.1.1.1 (A:) Myelin membrane adhesion molecule P0	0.002
d1jbja2	100	b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fra	0.002
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	0.002
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	0.003
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	0.003
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	0.004
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	0.004
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	0.004

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 2e-10
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 10/71 (14%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
          F C   GNP+ T+ W+K+GK              +      ++SV   DKG Y CV+ NE
Sbjct: 25 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE 84

Query: 57 QESAQASGELK 67
            S   +  L 
Sbjct: 85 YGSINHTYHLD 95

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 2e-04
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 71  RFDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
            +     K       +       F+C A GNP P + W  +GK+ 
Sbjct: 3   YWTNT-EKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF 46

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 5e-10
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
             K  G    T +WMK  K +            N     I + R+E  G Y  ++ N+ 
Sbjct: 20 LFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKL 79

Query: 58 ESAQASGELKLGGRFDPP 75
           S QA   L +  + DPP
Sbjct: 80 GSRQAQVNLTVVDKPDPP 97

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 7e-04
 Identities = 7/41 (17%), Positives = 15/41 (36%)

Query: 75  PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
           P I +   D+ +  G +       +G      +W    K++
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQI 41

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 49.8 bits (118), Expect = 7e-10
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHN----EPVFRIDSVRKEDKGMYQCVIRNEQESAQA 62
            CK  G P   + W  + KP+        +    I  V+  DKG Y C   NE      
Sbjct: 23 IPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYF 82

Query: 63 SGELK 67
             ++
Sbjct: 83 ETLVQ 87

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 34.7 bits (79), Expect = 4e-04
 Identities = 8/40 (20%), Positives = 15/40 (37%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK 113
           P   ++      +  G +    C  +G P P + W  + K
Sbjct: 3   PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAK 42

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.6 bits (107), Expect = 3e-08
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDH---NEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS 63
            C   GNPV  I W K           +EP+  I +V  ED+G Y+C   N +      
Sbjct: 25 LECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQ 84

Query: 64 GEL 66
          G +
Sbjct: 85 GRI 87

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.3 bits (83), Expect = 1e-04
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 74  PPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISWY 109
            P IK  F +D     G     +C A GNP P+I W 
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWR 40

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.9 bits (105), Expect = 7e-08
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNE--------PVFRIDSVRKEDKGMYQCVIRNEQE 58
            C    +   TI W   G+ V    +           +I  ++K D+G Y+C  R    
Sbjct: 21 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 80

Query: 59 SAQASGELKL 68
                ++++
Sbjct: 81 GEINFKDIQV 90

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.5 bits (104), Expect = 9e-08
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEPVF-----RIDSVRKEDKGMYQCVIRNEQESAQ 61
          ++C   G P   + W++DG+P+   N         R   +  ED GMYQCV  N+  +  
Sbjct: 21 WSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVY 80

Query: 62 ASGELK 67
          AS EL 
Sbjct: 81 ASAELT 86

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 34.5 bits (78), Expect = 5e-04
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 75  PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY 109
           P   +  +D   + G +  + C+ASG P P + W 
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWL 36

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.1 bits (103), Expect = 1e-07
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 11/72 (15%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDSVRKEDKGMYQCVIRN 55
            C  +G P  T+SW KDG+P+ +  E               I +V K D+  Y C+  N
Sbjct: 25 LVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAEN 84

Query: 56 EQESAQASGELK 67
          +     AS  LK
Sbjct: 85 KAGEQDASIHLK 96

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.7 bits (89), Expect = 2e-05
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 74  PPVI--KESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG 112
           PP +  ++S  + T N G +    C A G P P +SW  DG
Sbjct: 3   PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDG 43

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (104), Expect = 1e-07
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 18/80 (22%)

Query: 7   FTCK-YEGNPVKTISWMKDGKPVPDHNEPVFR-----------------IDSVRKEDKGM 48
            TC  ++G+P    SW KDG  +   +    R                  D V   D G 
Sbjct: 22  LTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGE 81

Query: 49  YQCVIRNEQESAQASGELKL 68
           Y C  +N   +A  S    +
Sbjct: 82  YYCQAQNGYGTAMRSEAAHM 101

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.6 bits (78), Expect = 6e-04
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKLVNAE 119
           PP         ++  G      C    G+P  E SW+ DG  ++ A+
Sbjct: 2   PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTAD 48

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 2e-07
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 9/70 (12%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVP---------DHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
          F+C  +G PV T++W++ G+ +             +  F I SV+  D+G Y  V+ N +
Sbjct: 19 FSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSE 78

Query: 58 ESAQASGELK 67
             +A   L 
Sbjct: 79 GKQEAEFTLT 88

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 2e-07
 Identities = 18/83 (21%), Positives = 24/83 (28%), Gaps = 22/83 (26%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP----------------------DHNEPVFRIDSVRKE 44
           F CK   +    I W+K  +                         D    V  I +V  E
Sbjct: 25  FVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFE 84

Query: 45  DKGMYQCVIRNEQESAQASGELK 67
           D G Y C+  N    +  S  L 
Sbjct: 85  DAGEYTCLAGNSIGISFHSAWLT 107

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 3e-05
 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 74  PPVIKESF-SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
            P+++    ++ +   G +  F C    +  P I W    +K 
Sbjct: 4   RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKN 46

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 1e-06
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 6/60 (10%)

Query: 10 KYEGNPVKTISWMKDGKPVPDHNEPVF------RIDSVRKEDKGMYQCVIRNEQESAQAS 63
          K E N +  + W KD KP+   N           + +V ++ +G Y C         Q  
Sbjct: 28 KNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYP 87

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 1e-06
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 17/79 (21%)

Query: 7   FTCK-YEGNPVKTISWMKDGKPVP----------------DHNEPVFRIDSVRKEDKGMY 49
            TC   +G+P    +W KDG  +P                +        D +   D G Y
Sbjct: 22  LTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY 81

Query: 50  QCVIRNEQESAQASGELKL 68
            C  RN   +   S  +++
Sbjct: 82  SCEARNGYGTPMTSNAVRM 100

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 1e-06
 Identities = 11/75 (14%), Positives = 19/75 (25%), Gaps = 10/75 (13%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRID----------SVRKEDKGMYQCVIRNE 56
          F  +  G P     W K+G  +   +   +              V  ED         N 
Sbjct: 24 FRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINI 83

Query: 57 QESAQASGELKLGGR 71
               +   L +  +
Sbjct: 84 AGETSSHAFLLVQAK 98

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 5e-05
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
            P I E    +T+  G + +F+    G P PE  WY +G K+
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKI 45

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 3e-06
 Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 19/89 (21%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHN----------------EPVFRIDSVRKEDKGMYQ 50
                +G P  ++ W+ +G  + + +                    R++     + G Y 
Sbjct: 20  IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79

Query: 51  CVIRNEQESAQASGELKLGGRFDPPVIKE 79
            +  N    A AS         D P    
Sbjct: 80  LLAANPFGQASASIMAAF---MDNPFEFN 105

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.3 bits (93), Expect = 3e-06
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 7  FTCKYEGNPVKTISWMKDG---------KPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
          F C+   +    ++W KD              + N+    I+ V+ +DKG Y    +N  
Sbjct: 21 FYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY 80

Query: 58 ESAQASGELKLGGRFDP 74
           + +    L +    +P
Sbjct: 81 GTKEEIVFLNVTRHSEP 97

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 4e-06
 Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 17/85 (20%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDHNEP--------------VFRIDSVRKEDKGMYQCV 52
                +GNP   + W  +G  + +                    ++D+    + G Y  +
Sbjct: 21  IPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLI 80

Query: 53  IRNEQESAQASGELKLGGRFDPPVI 77
            +NE    +             P I
Sbjct: 81  AKNEYGKDEKQISAHF---MGWPGI 102

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 4e-06
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 12/72 (16%)

Query: 7  FTCKYEGNPVKTISWMKDGKP-----------VPDHNEPVFRIDSVRKEDKGMYQCVIRN 55
            C+        + W K+G+              +  + +  I+   K D   Y  +   
Sbjct: 20 LECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG 78

Query: 56 EQESAQASGELK 67
           Q SA+ S +LK
Sbjct: 79 GQSSAKLSVDLK 90

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 6e-06
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 11/68 (16%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDSVRKEDKGMYQCVIRN 55
            C  EG     I W+KDG  V + ++               + SV + D G Y C + +
Sbjct: 16 LNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED 75

Query: 56 EQESAQAS 63
            E+  + 
Sbjct: 76 GGETEISQ 83

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 39.1 bits (90), Expect = 1e-05
 Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 10/71 (14%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRID----------SVRKEDKGMYQCVIRNE 56
          F CK EG P   + W KD  PV +        D           V  +D   Y C   N 
Sbjct: 28 FDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNS 87

Query: 57 QESAQASGELK 67
             A  + EL 
Sbjct: 88 LGEATCTAELL 98

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 1e-05
 Identities = 6/53 (11%), Positives = 12/53 (22%)

Query: 4  LKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE 56
           +            TI W +    +         ++        M+ C   N 
Sbjct: 19 FQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNL 71

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 1e-05
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGEL 66
            C+  GNP+  +  +KD         P+    +V ++ +G Y C  R+ Q        +
Sbjct: 24 PMCQAWGNPLPELKCLKD----GTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTV 79

Query: 67 K 67
           
Sbjct: 80 N 80

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (87), Expect = 3e-05
 Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 4/68 (5%)

Query: 4  LKFFTCKYEGNPVKTISWMKDGKPVPDHNEP----VFRIDSVRKEDKGMYQCVIRNEQES 59
          + F       +P  T+ W +               +  I +V+  D G Y C   N    
Sbjct: 20 VTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAM 79

Query: 60 AQASGELK 67
           Q +  L 
Sbjct: 80 DQGTATLH 87

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 5e-05
 Identities = 9/50 (18%), Positives = 13/50 (26%), Gaps = 6/50 (12%)

Query: 13 GNPVKTISWMKDGKPVPDHNEPV------FRIDSVRKEDKGMYQCVIRNE 56
               T+ W+        H            + SV+  D G Y C     
Sbjct: 33 PEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGR 82

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 6e-05
 Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 38/99 (38%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVPDH----------------------------------- 31
                 G+P  T+ W K                                           
Sbjct: 29  LDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVE 88

Query: 32  ---NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK 67
              +  +F ++   KED+G+Y   ++N     Q +  +K
Sbjct: 89  TTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 127

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (76), Expect = 0.002
 Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 5/52 (9%)

Query: 71  RFDPPVIKESFSDE-----TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN 117
           R +PP I             +  G         SG+P P + W     +   
Sbjct: 1   RQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNK 52

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.8 bits (84), Expect = 8e-05
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 8/62 (12%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEPVFR--------IDSVRKEDKGMYQCVIRNEQE 58
           TC+   NP  T  W  +G  +    +  +R         + V+ +D G YQCV  N + 
Sbjct: 27 LTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARG 86

Query: 59 SA 60
          + 
Sbjct: 87 TV 88

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (83), Expect = 1e-04
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 29  PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGGRFDPPVI 77
               +   RI +VR  D+G Y C  R+     +A+ ELK+    DP   
Sbjct: 76  IGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKV---EDPFYW 121

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 2e-04
 Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 12/69 (17%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVP------------DHNEPVFRIDSVRKEDKGMYQCVIR 54
          F C   G  V        G  V                   F + +  K D G Y+C+IR
Sbjct: 21 FQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR 80

Query: 55 NEQESAQAS 63
           E     ++
Sbjct: 81 TEGGVGISN 89

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.3 bits (80), Expect = 3e-04
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 11/68 (16%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVPDHNEP-----------VFRIDSVRKEDKGMYQCVIRN 55
            C Y  NP+   ++ K+GK V  + E                 +   ED+G+Y C + N
Sbjct: 23 IYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDN 82

Query: 56 EQESAQAS 63
               Q  
Sbjct: 83 GVGKPQKH 90

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 5e-04
 Identities = 6/63 (9%), Positives = 15/63 (23%)

Query: 5   KFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASG 64
           K           + +                  I   +    G Y+C +  + +   ++ 
Sbjct: 43  KGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNF 102

Query: 65  ELK 67
            L 
Sbjct: 103 NLT 105

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (75), Expect = 0.001
 Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 10/71 (14%)

Query: 7  FTCKY-EGNPVKTISWMKDGKPVPDHNEPVFRID---------SVRKEDKGMYQCVIRNE 56
            C         TI+W KD    P   E   RI            + ED G Y CV+RN 
Sbjct: 22 RPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNS 81

Query: 57 QESAQASGELK 67
              +     K
Sbjct: 82 SYCLRIKISAK 92

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 33.1 bits (74), Expect = 0.002
 Identities = 12/66 (18%), Positives = 16/66 (24%), Gaps = 9/66 (13%)

Query: 7  FTCKYEGNPVKTISWMKDG---------KPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQ 57
            C  EGN        K                 +E        +  D+G YQC      
Sbjct: 22 LECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA 81

Query: 58 ESAQAS 63
            A + 
Sbjct: 82 GVASSR 87

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.3 bits (75), Expect = 0.002
 Identities = 7/40 (17%), Positives = 17/40 (42%)

Query: 29  PDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL 68
           P   +    I ++   D G + C ++N  +    + ++ L
Sbjct: 76  PSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTL 115

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.0 bits (75), Expect = 0.002
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 8  TCKYEGNPVKTISWMKDGKPVPDHNEPVFRI-DSVRKEDKGMYQCVIRNEQESA 60
          TC  + +  + + W K+G+ +P  ++    + D    ED G Y C      ++ 
Sbjct: 20 TCPLDSD--ENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNT 71

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (73), Expect = 0.002
 Identities = 7/42 (16%), Positives = 16/42 (38%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKL 115
            P +K    + +++ G +   +C   G    +  W L   + 
Sbjct: 2   VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQ 43

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (74), Expect = 0.003
 Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 13/82 (15%)

Query: 7   FTCKYEGNPVKTISWMKDGKPVP-------------DHNEPVFRIDSVRKEDKGMYQCVI 53
                 GNP  T+ W+ +G+P+              + +E     +     + G Y  + 
Sbjct: 22  IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA 81

Query: 54  RNEQESAQASGELKLGGRFDPP 75
           +N   +A  +          P 
Sbjct: 82  KNPLGTANQTINGHFLKEPFPV 103

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 32.3 bits (72), Expect = 0.003
 Identities = 7/36 (19%), Positives = 12/36 (33%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY 109
            P I  +     +  G  +  +    G P P  +W 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWT 37

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.1 bits (72), Expect = 0.004
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 11/65 (16%)

Query: 7  FTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNE 56
           T +   +    + W+K+G+ +              +    I      D   YQCV+  E
Sbjct: 26 LTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE 84

Query: 57 QESAQ 61
          + S +
Sbjct: 85 KCSTE 89

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (72), Expect = 0.004
 Identities = 4/45 (8%), Positives = 14/45 (31%), Gaps = 3/45 (6%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASG---NPTPEISWYLDGKKL 115
           P  +  +     +  G ++  +C         +  +  +   + L
Sbjct: 2   PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETL 46

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (72), Expect = 0.004
 Identities = 9/36 (25%), Positives = 13/36 (36%)

Query: 74  PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWY 109
           PP +K   S E +N G      C +   P      +
Sbjct: 2   PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAW 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.72
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.71
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.71
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.71
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.69
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.69
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.68
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.68
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.67
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.67
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.66
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.66
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.66
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.66
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.65
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.65
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.64
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.61
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.6
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.6
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.58
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.57
d2avga1	110	Cardiac myosin binding protein C, different domain	99.57
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.57
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.57
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.56
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.56
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.56
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.55
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.55
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.55
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.55
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.55
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.54
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.54
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.54
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.54
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.53
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.53
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.52
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.51
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.51
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.5
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.49
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.49
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.47
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.46
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.44
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.43
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.4
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.39
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.37
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.37
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.36
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.34
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.3
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.29
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.22
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.16
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.16
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	99.01
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.0
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.99
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.98
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.98
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.94
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.94
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	98.92
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.9
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	98.88
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.88
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.81
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.8
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.79
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.79
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.79
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.78
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.78
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.77
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.73
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.72
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.72
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.7
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.7
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.7
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.69
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.69
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.68
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.68
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.67
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.66
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	98.66
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.66
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.66
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.65
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.63
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.63
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	98.63
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.63
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.63
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.62
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.62
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.62
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.61
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.61
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.6
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.59
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.58
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.57
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.57
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.57
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.56
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.56
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.56
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	98.56
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.56
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.55
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.55
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.55
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.54
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.53
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.52
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.52
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.52
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.51
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.51
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.5
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.49
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.49
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.48
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.48
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.47
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.46
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.46
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.46
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.45
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.45
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.44
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.44
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.44
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.43
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.43
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.43
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.43
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.42
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.42
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.42
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.42
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.41
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.41
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.41
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.41
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.41
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.41
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.41
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.39
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.39
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.38
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.38
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.37
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.36
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.36
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.36
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.36
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.36
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.36
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.36
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.36
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.35
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.35
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.34
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.34
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.34
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.33
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.31
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.3
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.3
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.3
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.3
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	98.3
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.29
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.29
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.28
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.28
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.28
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.28
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.27
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.26
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.26
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.26
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.25
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.24
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.22
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.22
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.21
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.2
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.2
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.19
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	98.18
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.17
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.16
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.15
d2avga1	110	Cardiac myosin binding protein C, different domain	98.15
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.14
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	98.13
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.13
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.13
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.12
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.12
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.11
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.1
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	98.09
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	98.09
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.09
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.07
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.07
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.05
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	98.05
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	98.04
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	98.02
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.01
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.0
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	98.0
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.95
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.95
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.94
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.94
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.91
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.86
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.86
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.86
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	97.85
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.85
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.83
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.83
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.83
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.82
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.82
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.81
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.81
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.8
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.79
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.78
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.75
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.74
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.74
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.74
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.72
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.72
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	97.71
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.71
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.7
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.7
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.7
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.7
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.69
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.69
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.68
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.68
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.68
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.67
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.66
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.66
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.65
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.65
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	97.65
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.64
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.63
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.63
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.63
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	97.62
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.62
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.62
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.61
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.61
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.61
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.61
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.61
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.6
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.6
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.59
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.59
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.59
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.58
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.58
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.56
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.56
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.56
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.55
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.55
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.55
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.54
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.53
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.52
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.52
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.52
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.52
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.52
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.51
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.51
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.51
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.5
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.5
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.49
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.49
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.48
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.48
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	97.48
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.48
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.47
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.47
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.47
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.46
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.45
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.45
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.43
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.43
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.42
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.4
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.38
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.36
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	97.35
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.35
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.34
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.33
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.33
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.32
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.3
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.29
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.26
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.21
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.2
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.2
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.19
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.18
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.16
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.1
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.09
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.09
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.07
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.07
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.04
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.03
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.02
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	96.99
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	96.98
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	96.97
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	96.95
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	96.93
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	96.84
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	96.8
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	96.78
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	96.74
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	96.71
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	96.71
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	96.7
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	96.69
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	96.66
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.64
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	96.61
d1xmwa2	66	CD3 epsilon chain ectodomain fragment {Sheep (Ovis	96.59
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	96.59
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	96.58
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	96.58
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	96.57
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	96.55
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	96.53
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	96.52
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	96.48
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	96.46
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	96.46
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	96.42
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	96.41
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	96.37
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	96.37
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	96.36
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.34
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	96.29
d8faba1	103	Immunoglobulin light chain lambda variable domain,	96.28
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	96.25
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.16
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	96.11
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	96.03
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	96.02
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	96.01
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	96.0
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	95.99
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	95.95
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	95.94
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	95.92
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	95.88
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	95.87
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	95.85
d1igyb3	116	Immunoglobulin heavy chain gamma constant domain 2	95.78
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	95.65
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	95.62
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	95.61
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	95.57
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	95.55
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	95.48
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	95.43
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	95.42
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	95.41
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	95.4
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	95.36
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	95.33
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	95.26
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	95.25
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	95.23
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	95.22
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	95.22
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	95.2
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	95.15
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	95.11
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	95.09
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	95.08
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	95.08
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	95.08
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	95.07
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	95.04
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	95.03
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	95.03
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	94.96
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.96
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	94.95
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	94.94
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	94.92
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	94.91
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	94.9
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	94.9
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	94.88
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	94.86
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	94.84
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	94.81
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	94.8
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	94.77
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	94.75
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	94.75
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	94.73
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.7
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	94.68
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.67
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	94.67
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	94.66
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	94.64
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	94.63
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	94.62
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	94.59
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	94.5
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	94.48
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	94.48
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.46
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	94.46
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	94.46
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	94.45
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	94.41
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	94.4
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	94.36
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	94.35
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	94.32
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	94.3
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	94.28
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	94.25
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	94.22
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	94.22
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.22
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	94.21
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	94.2
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	94.16
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	94.12
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	94.11
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	94.1
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	94.03
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	93.96
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	93.91
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	93.88
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	93.85
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	93.82
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	93.81
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	93.8
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	93.77
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	93.73
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	93.71
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	93.68
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	93.59
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	93.53
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	93.53
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	93.52
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	93.48
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	93.45
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	93.42
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	93.4
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	93.37
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	93.2
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	93.17
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	93.16
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	93.15

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.72  E-value=2.7e-17  Score=79.69  Aligned_cols=68  Identities=31%  Similarity=0.635  Sum_probs=57.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      +|+.+.|.|.+.|.|.+.+.|++++..+...     ....|.|..+..+|.|.|.|.+.|..+.......+.|
T Consensus        15 ~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   87 (89)
T d1cs6a4          15 IGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV   87 (89)
T ss_dssp             TTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCCEEEEEEEEEE
Confidence            4899999999999999999999999887653     2468999999999999999999999876655555554

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=7.4e-17  Score=79.90  Aligned_cols=70  Identities=26%  Similarity=0.272  Sum_probs=59.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG   70 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~   70 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...         ....|.|.+++.+|+|.|.|.+.|..+.......+.|..
T Consensus        14 ~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   92 (101)
T d2cqva1          14 AGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVD   92 (101)
T ss_dssp             TTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEEC
T ss_pred             CCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEEEEEe
Confidence            4899999999999999999999999887543         224699999999999999999999988777777777654

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=4.4e-17  Score=80.60  Aligned_cols=68  Identities=31%  Similarity=0.581  Sum_probs=56.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      +|+.+.|.|.+.|.|.|.+.|++++..+...           ....|.|.+++.+|.|.|.|.+.|..+.......+.|
T Consensus        19 ~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   97 (100)
T d1qz1a3          19 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV   97 (100)
T ss_dssp             SCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence            4899999999999999999999998876431           3467999999999999999999998776655555554

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.71  E-value=5.2e-17  Score=78.67  Aligned_cols=68  Identities=24%  Similarity=0.434  Sum_probs=56.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.|.|.|.+.|++++..+...    ....|.|.++...|.|.|.|.+.|..+.......+.|
T Consensus        17 ~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          17 QGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV   88 (89)
T ss_dssp             TTSCEEEECEEEEESCCCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCeEEEEEEEEEeCCCEEEEEeCCccCccccEEEeeeeEEECCCChhhCEEEEEEEEECCCEEEEEEEEEE
Confidence            3899999999999999999999999887543    2457999999999999999999998776555555443

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.71  E-value=6.4e-17  Score=78.68  Aligned_cols=68  Identities=28%  Similarity=0.485  Sum_probs=56.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC---CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD---HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~---~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.|.|.+.+.|++++.....   .....|.|.+++..|.|.|.|.+.|..+.......+.|
T Consensus        19 ~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   89 (91)
T d1cs6a3          19 TGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII   89 (91)
T ss_dssp             TTCCEEEECEEEEESCCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCcEEEEEEEEEccCCEEEEEecccccceEeeeeeeEEEeCCCCccCCEEEEEEEEECCCEEEEEEEEEE
Confidence            489999999999999999999997654432   24678999999999999999999999876655555554

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.69  E-value=3.3e-17  Score=80.62  Aligned_cols=68  Identities=32%  Similarity=0.562  Sum_probs=56.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC----------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.|.|.+.+.|++|+..+...          ....|.|.++..+|.|.|.|.+.|..+.......+.|
T Consensus        19 ~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   96 (97)
T d3dara1          19 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV   96 (97)
T ss_dssp             TTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence            3899999999999999999999999877431          2368999999999999999999999876655555544

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.69  E-value=8.7e-17  Score=79.07  Aligned_cols=69  Identities=20%  Similarity=0.334  Sum_probs=57.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.|.|.+.|.|++++..+...         ....|.|.+++..|.|.|.|.+.|..+.......+.|.
T Consensus        15 ~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   92 (97)
T d1koaa1          15 EGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT   92 (97)
T ss_dssp             TTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEECCEEE
T ss_pred             CCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEEEEEEe
Confidence            4899999999999999999999999877542         22469999999999999999999988776666666664

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.6e-16  Score=76.25  Aligned_cols=59  Identities=17%  Similarity=0.255  Sum_probs=51.8

Q ss_pred             CCccEEEEEEeccCCCC-eeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          1 MLALKFFTCKYEGNPVK-TISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~-~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      .|+.+.|.|.+.|.|.| .|.|+||+..+.......+.+.....+|.|.|.|.+.|..+.
T Consensus        15 ~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~~~~~l~~~~~~d~G~Y~C~A~N~~G~   74 (85)
T d1rhfa2          15 PNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGL   74 (85)
T ss_dssp             TTCCEEEEEEEECSSSCCEEEEEETTEECSCSEESSEEEEECCCSSCEEEEEEEEETTEE
T ss_pred             CCCEEEEEEEEecCCcceEEEEEECCEECCCCCCcceEEecCCccccEEEEEEEEcCCCc
Confidence            38999999999999987 899999999987766667788888889999999999998764

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.68  E-value=3.8e-16  Score=76.75  Aligned_cols=68  Identities=25%  Similarity=0.444  Sum_probs=55.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----------CCCeEEEecCCCCCCeEEEEEEEcCCCCce-eEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ-ASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~-~~~~~~v   68 (119)
                      +|+.+.|.|.+.+.|.+.+.|++++..+...           ....|.|.+++..|.|.|.|.+.|..+... ..+.+.|
T Consensus        17 ~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~L~V   96 (97)
T d1biha3          17 AGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV   96 (97)
T ss_dssp             TTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEE
T ss_pred             cCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEEEEEEEE
Confidence            5899999999999999999999998876431           235799999999999999999999887643 3445544

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.67  E-value=2.5e-16  Score=78.05  Aligned_cols=68  Identities=29%  Similarity=0.501  Sum_probs=57.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC----------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...          ....|.|.+++..|.|.|.|.+.|..+....+..+.|
T Consensus        22 ~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V   99 (102)
T d1fhga_          22 EGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV   99 (102)
T ss_dssp             TTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEEEEEE
Confidence            4899999999999999999999999877542          1346899999999999999999999877666666655

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.67  E-value=3e-16  Score=77.23  Aligned_cols=69  Identities=17%  Similarity=0.184  Sum_probs=57.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC----------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN----------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~----------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+.+.|.+.+.||+++..+....          ...|.|.++...|.|.|.|.+.|..+.......+.|.
T Consensus        18 ~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~L~V~   96 (98)
T d1g1ca_          18 QGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ   96 (98)
T ss_dssp             TTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEEEEEEEE
Confidence            48999999999999999999999998875431          2368999999999999999999998776666666653

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.66  E-value=9.3e-17  Score=78.10  Aligned_cols=68  Identities=28%  Similarity=0.577  Sum_probs=56.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.|.|.|.+.|++++..+...         ....|.|.++...|.|.|.|.+.|..+.......+.|
T Consensus        13 ~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   89 (91)
T d1tnna_          13 EGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI   89 (91)
T ss_dssp             SSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEEEEC
T ss_pred             CCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEEEEE
Confidence            3899999999999999999999999877542         2357899999999999999999999887666655554

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.6e-16  Score=75.83  Aligned_cols=68  Identities=13%  Similarity=0.226  Sum_probs=55.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC------CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      +|+.+.|.|.+.+.|.+.+.|++++..+..      .....|.|.+++.+|.|.|.|.+.|..+.......+.|
T Consensus        15 ~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V   88 (90)
T d1vcaa2          15 IGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEI   88 (90)
T ss_dssp             TTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEE
Confidence            489999999999999999999997765432      23467999999999999999999999876666665554

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.66  E-value=1.9e-16  Score=77.24  Aligned_cols=68  Identities=18%  Similarity=0.234  Sum_probs=56.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.|.|.|.+.|++++..+...         ....|.|.++...|.|.|.|.+.|..+.......+.|
T Consensus        16 ~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V   92 (93)
T d1wiua_          16 AGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             SSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECCCEEEEEEEEEE
Confidence            4899999999999999999999999877543         2347899999999999999999999877666655554

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.9e-16  Score=75.87  Aligned_cols=67  Identities=7%  Similarity=0.115  Sum_probs=55.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.++|.|.+.|.|.|.+.|++++.... .....|.|.++..+|.|.|.|.+.|..+.......+.|
T Consensus        13 ~G~~~~L~C~~~g~p~P~i~W~~~~~~~~-~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V   79 (84)
T d2nxyb2          13 QGQSLTLTLESPPGSSPSVQCRSPRGKNI-QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV   79 (84)
T ss_dssp             TTCCEEEEEECCTTCCCEEEEECTTCCEE-EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECE
T ss_pred             CCCeEEEEEEeEcCCchheEEEeecccce-eeeeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEE
Confidence            38999999999999999999999776543 34568999999999999999999998766555555544

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=4.1e-16  Score=75.91  Aligned_cols=68  Identities=19%  Similarity=0.323  Sum_probs=54.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC--------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+.|.|.|.+.|++++..+...        ....|.|.+++..|.|.|.|.+.|..+.......+.|
T Consensus        15 ~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~i~V   90 (92)
T d1epfa2          15 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV   90 (92)
T ss_dssp             TTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             CCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCCEEEEEEEEE
Confidence            4899999999999999999999998765431        3457999999999999999999997554444444444

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.2e-15  Score=73.82  Aligned_cols=68  Identities=22%  Similarity=0.306  Sum_probs=55.5

Q ss_pred             CCccEEEEEEec-cCCCCeeEEeeCCccCCCC----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYE-GNPVKTISWMKDGKPVPDH----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~-~~~~~~v~w~~~~~~~~~~----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.+.|.|.+. +.|.+.+.|++++..+...    ....|.|.+++..|.|.|.|.+.|..+.......+.|
T Consensus        16 ~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1gl4b_          16 PGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV   88 (89)
T ss_dssp             TTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCCcEEEEEEccCCCCCCEEEEecCCceeeccccEeeceEEEEecCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence            489999999997 5678899999988776442    3578999999999999999999999876655555544

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=7.8e-16  Score=74.54  Aligned_cols=68  Identities=15%  Similarity=0.246  Sum_probs=55.0

Q ss_pred             CCccEEEEEEec-cCCCCeeEEeeCCccCCC----CCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYE-GNPVKTISWMKDGKPVPD----HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~-~~~~~~v~w~~~~~~~~~----~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      +|+.+.|.|.+. +.|.+.+.|++.+..+..    .....|.|.+++.+|+|.|.|.+.+..+....+..+.|
T Consensus        17 ~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l~V   89 (90)
T d1gsma1          17 LGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV   89 (90)
T ss_dssp             TTCCEEEEEEECCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eCCcEEEEEEecCCCCccEEEEEEeeeeeeeeeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEEEEE
Confidence            599999999885 678899999998776532    23467999999999999999999998766666665554

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=5.1e-15  Score=74.16  Aligned_cols=70  Identities=26%  Similarity=0.407  Sum_probs=55.5

Q ss_pred             CCccEEEEEEec-cCCCCeeEEeeCCccCCCC-----------------CCCeEEEecCCCCCCeEEEEEEEcCCCCcee
Q psy12725          1 MLALKFFTCKYE-GNPVKTISWMKDGKPVPDH-----------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA   62 (119)
Q Consensus         1 ~g~~~~l~c~~~-~~~~~~v~w~~~~~~~~~~-----------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~   62 (119)
                      +|+.+.|.|.+. +.|.+.+.|++++..+...                 ....|.|.+++..|.|.|+|.+.|..+....
T Consensus        16 ~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~   95 (110)
T d1f97a2          16 IGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMR   95 (110)
T ss_dssp             TTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEE
T ss_pred             cCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCcEEE
Confidence            589999999985 6889999999998765321                 2357899999999999999999999877665


Q ss_pred             EeeEEEee
Q psy12725         63 SGELKLGG   70 (119)
Q Consensus        63 ~~~~~v~~   70 (119)
                      +..+.+.+
T Consensus        96 s~~v~l~V  103 (110)
T d1f97a2          96 SEAAHMDA  103 (110)
T ss_dssp             CCCEEEEE
T ss_pred             EEEEEEEE
Confidence            55555543

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2e-15  Score=73.30  Aligned_cols=60  Identities=27%  Similarity=0.448  Sum_probs=50.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----------CCCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----------NEPVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      .|+.+.|.|.+.+.|.+.+.|+|++..+...           ....|.|.+++..|.|.|.|.+.|..+..
T Consensus        10 ~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   80 (91)
T d1rhfa1          10 QGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETE   80 (91)
T ss_dssp             TTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCE
T ss_pred             CCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCE
Confidence            4899999999999999999999999887542           12468899999999999999999987653

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.60  E-value=2.6e-15  Score=75.10  Aligned_cols=68  Identities=25%  Similarity=0.319  Sum_probs=53.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC----------------------CCCCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD----------------------HNEPVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~----------------------~~~~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      +|+.+.|.|.+.+.|.|.|.|+|++.....                      .....|.|.++...|.|.|.|.+.|..+
T Consensus        19 ~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G   98 (109)
T d2fdbp2          19 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIG   98 (109)
T ss_dssp             TTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             cCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEEEEEEECCC
Confidence            589999999999999999999986543211                      0124689999999999999999999988


Q ss_pred             CceeEeeEEE
Q psy12725         59 SAQASGELKL   68 (119)
Q Consensus        59 ~~~~~~~~~v   68 (119)
                      .......+.|
T Consensus        99 ~~~~~~~L~V  108 (109)
T d2fdbp2          99 ISFHSAWLTV  108 (109)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            7766666554

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7.4e-16  Score=74.98  Aligned_cols=67  Identities=13%  Similarity=0.219  Sum_probs=54.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC-------CCCCeEEEecCCCCCCe-EEEEEEEcCCCCceeEeeEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD-------HNEPVFRIDSVRKEDKG-MYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~-------~~~~~l~~~~~~~~d~g-~y~C~~~~~~~~~~~~~~~~   67 (119)
                      .|+.+.|.|.+.|.|.|.+.|++++..+..       .....|.|.+++.+|.| .|.|.+.|..+....+..+.
T Consensus        16 ~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~l~   90 (92)
T d2ifga1          16 VGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVN   90 (92)
T ss_dssp             TTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCC
T ss_pred             CCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCCEEEEEEEEE
Confidence            489999999999999999999999866532       13357999999999998 79999999987665555443

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.57  E-value=3.4e-15  Score=72.10  Aligned_cols=59  Identities=17%  Similarity=0.296  Sum_probs=48.8

Q ss_pred             CCccEEEEEEecc-CCCCeeEEeeCCccCCC-CCCCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          1 MLALKFFTCKYEG-NPVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         1 ~g~~~~l~c~~~~-~~~~~v~w~~~~~~~~~-~~~~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      .|+.++|.|.+.+ .|.+.+.||||++.+.. .....+.|..++.+|.|.|.|.+.+..+.
T Consensus        16 eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~   76 (89)
T d1fnla2          16 EEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKN   76 (89)
T ss_dssp             TTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             cCCeEEEEEEecCCCCCcEEEEEEcccccceeccccccEECccceeccceEEEEEEeCCCC
Confidence            4899999999864 46668999999987643 34568999999999999999999987643

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.2e-14  Score=71.22  Aligned_cols=69  Identities=13%  Similarity=0.178  Sum_probs=55.0

Q ss_pred             CCccEEEEEEeccCC---CCeeEEeeCCccCCCC------------------CCCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          1 MLALKFFTCKYEGNP---VKTISWMKDGKPVPDH------------------NEPVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~---~~~v~w~~~~~~~~~~------------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      .|+.+.|.|.+.+.|   .+.|.|++++......                  ....|.|.+++..|.|.|.|.+.|..+.
T Consensus        18 ~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   97 (110)
T d2avga1          18 VGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKF   97 (110)
T ss_dssp             TTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEEEEETTEE
T ss_pred             CCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEEEEECCCe
Confidence            489999999999887   5789999987433111                  1136899999999999999999999887


Q ss_pred             ceeEeeEEEe
Q psy12725         60 AQASGELKLG   69 (119)
Q Consensus        60 ~~~~~~~~v~   69 (119)
                      ......+.|.
T Consensus        98 ~~~~~~L~V~  107 (110)
T d2avga1          98 DCSNFNLTVH  107 (110)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            7777777764

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.57  E-value=7e-15  Score=70.87  Aligned_cols=59  Identities=17%  Similarity=0.328  Sum_probs=49.4

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeCCccCCC-CCCCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKDGKPVPD-HNEPVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~~~~~~~-~~~~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      .|+.++|.|.+.+. |.+.+.|||++..+.. .....|.|..++.+|+|.|.|.+.+..+.
T Consensus        14 eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~   74 (88)
T d2fcba2          14 EGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNFSIPQANHSHSGDYHCTGNIGYTL   74 (88)
T ss_dssp             TTCCEEEEEEEGGGCCCEEEEEEETTEEEEEESSCCEEEETTCCGGGCEEEEEEEEETTEE
T ss_pred             cCCeEEEEEEecCCCCCcEEEEEeecccccccccccccccCccCHHHCCeEEEEEEeCCCC
Confidence            38999999999654 6678999999988753 35678999999999999999999997643

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.7e-14  Score=69.64  Aligned_cols=69  Identities=23%  Similarity=0.254  Sum_probs=53.2

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeCCccCCCC-CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEee
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKDGKPVPDH-NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLGG   70 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~~~~~~~~-~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~   70 (119)
                      .|+.++|.|.+.+. +...+.||||++.+... ....+.|..++.+|.|.|.|.+.+..+.. .+..+.+.+
T Consensus        14 eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~-~S~~v~i~V   84 (89)
T d1f2qa2          14 EGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDY-ESEPLNITV   84 (89)
T ss_dssp             TTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCCSSEEEESSCCGGGCEEEEEEEEETTEEE-ECCCEEEEE
T ss_pred             CCCEEEEEEEecCCCCCeEEEEEEeeeccccccccceEEEeeeeeecCcEEEEEEEeCCCCe-EeeeEEEEE
Confidence            38999999999765 45689999999987543 45789999999999999999999875432 233344443

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2e-14  Score=69.74  Aligned_cols=61  Identities=13%  Similarity=0.274  Sum_probs=50.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEcCCCCcee
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQA   62 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~   62 (119)
                      .|+++.|.|.+.+ +.+.+.|++++..+...       ....|.|.+++.+|.|.|.|.+.+..+....
T Consensus        11 ~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~   78 (92)
T d1olza1          11 HGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTV   78 (92)
T ss_dssp             TTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEE
T ss_pred             CCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCEEE
Confidence            4899999999988 66899999998877442       3457999999999999999999997665443

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=6.2e-15  Score=72.92  Aligned_cols=70  Identities=19%  Similarity=0.316  Sum_probs=55.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC------------C-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD------------H-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS   63 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~------------~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~   63 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++.....            .     ...+|.|.+++.+|.|.|.|.+.+..+.....
T Consensus        15 ~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~   94 (102)
T d1f97a1          15 ENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGE   94 (102)
T ss_dssp             TTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEETTSSSEEE
T ss_pred             CCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEEEECCCCEEEE
Confidence            489999999999999999999985433210            0     23579999999999999999999998877777


Q ss_pred             eeEEEee
Q psy12725         64 GELKLGG   70 (119)
Q Consensus        64 ~~~~v~~   70 (119)
                      ..+.+.+
T Consensus        95 ~~v~v~V  101 (102)
T d1f97a1          95 VSIHLTV  101 (102)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            6666653

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.2e-15  Score=74.91  Aligned_cols=69  Identities=22%  Similarity=0.364  Sum_probs=54.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC------------C-----CCCeEEEecCCCCCCeEEEEEEEcCCCCceeE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD------------H-----NEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS   63 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~------------~-----~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~   63 (119)
                      .|+.+.|.|.+.+.|.+.+.|++++..+..            .     ....|.|.+++.+|.|.|.|.+.|..+.....
T Consensus        18 ~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~G~~~~~   97 (105)
T d1nbqa1          18 ENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGE   97 (105)
T ss_dssp             TTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETTSSCEEC
T ss_pred             CCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEECCCCEEEE
Confidence            389999999999999999999987543311            0     12579999999999999999999998877666


Q ss_pred             eeEEEe
Q psy12725         64 GELKLG   69 (119)
Q Consensus        64 ~~~~v~   69 (119)
                      ..+.+.
T Consensus        98 ~~v~v~  103 (105)
T d1nbqa1          98 VKVKLI  103 (105)
T ss_dssp             CEEECC
T ss_pred             EEEEEE
Confidence            666553

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=2.6e-14  Score=69.90  Aligned_cols=59  Identities=29%  Similarity=0.520  Sum_probs=49.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      .|+.+.|.|.+.+ +.+.+.|++++..+...       ....|.|..++.+|.|.|.|.+.|..+..
T Consensus        17 ~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~   82 (96)
T d1l6za2          17 ELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVR   82 (96)
T ss_dssp             TTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCE
T ss_pred             CCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCe
Confidence            4899999999866 56799999999887543       35689999999999999999999987654

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.5e-15  Score=72.59  Aligned_cols=63  Identities=21%  Similarity=0.309  Sum_probs=50.2

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      |+.+.|.|.+.|.|.|.+.|+|++..+....    .+..++..|+|.|.|.+.|..+.......+.|
T Consensus        19 G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~----~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V   81 (84)
T d2oz4a3          19 NSQQTPMCQAWGNPLPELKCLKDGTFPLPIG----ESVTVTRDLEGTYLCRARSTQGEVTREVTVNV   81 (84)
T ss_dssp             TCEECCCCCCEEESCCEEEEEETTTEECCTT----SCEECCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCEEEEEEEEeEcCccEEEEEEeeccceeee----eeeccccCCCCEEEEEEEcCCCEEEEEEEEEE
Confidence            8899999999999999999999988764322    23467889999999999998776555544444

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.6e-14  Score=71.88  Aligned_cols=69  Identities=19%  Similarity=0.211  Sum_probs=54.3

Q ss_pred             CCccEEEEEEeccCC---CCeeEEeeCCccCCC---------------C---CCCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          1 MLALKFFTCKYEGNP---VKTISWMKDGKPVPD---------------H---NEPVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~---~~~v~w~~~~~~~~~---------------~---~~~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      .|+.+.|.|.+.+.|   .|.|.|+|++.....               .   ....|.|.+++..|.|.|+|.+.|..+.
T Consensus        14 ~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   93 (113)
T d2dava1          14 VGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKF   93 (113)
T ss_dssp             TTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCE
T ss_pred             CCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEEEeCCCE
Confidence            489999999999887   579999997642210               0   1246899999999999999999999887


Q ss_pred             ceeEeeEEEe
Q psy12725         60 AQASGELKLG   69 (119)
Q Consensus        60 ~~~~~~~~v~   69 (119)
                      ......+.|.
T Consensus        94 ~~~~~~L~V~  103 (113)
T d2dava1          94 DSCSFDLEVH  103 (113)
T ss_dssp             EEECCEEEEE
T ss_pred             EEEEEEEEEE
Confidence            7767777764

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=7.6e-15  Score=75.39  Aligned_cols=68  Identities=21%  Similarity=0.373  Sum_probs=54.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC--------------------------------------CCCeEEEecCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH--------------------------------------NEPVFRIDSVR   42 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------------------------------------~~~~l~~~~~~   42 (119)
                      .|+.+.|.|.+.|.|.+.+.|++++..+...                                      ....|.|.+++
T Consensus        23 ~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  102 (130)
T d1gxea_          23 AGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAE  102 (130)
T ss_dssp             SSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEEEECSCCC
T ss_pred             cCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEEEEEECcCC
Confidence            3899999999999999999999976554210                                      11359999999


Q ss_pred             CCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725         43 KEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus        43 ~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .+|+|.|+|.+.|..|.......+.|
T Consensus       103 ~~D~G~Y~C~a~N~~G~~~~~~~l~V  128 (130)
T d1gxea_         103 KEDEGVYTVTVKNPVGEDQVNLTVKV  128 (130)
T ss_dssp             TTTCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             hhcCEEEEEEEEECCCEEEEEEEEEE
Confidence            99999999999999887666655554

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.3e-15  Score=73.72  Aligned_cols=68  Identities=25%  Similarity=0.532  Sum_probs=54.7

Q ss_pred             CCccEEEEEEec-cCCCCeeEEeeCCccCCCC----------------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeE
Q psy12725          1 MLALKFFTCKYE-GNPVKTISWMKDGKPVPDH----------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQAS   63 (119)
Q Consensus         1 ~g~~~~l~c~~~-~~~~~~v~w~~~~~~~~~~----------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~   63 (119)
                      +|+.+.|.|.+. +.|.+.+.|++++..+...                ....|.|.+++..|.|.|.|.+.|..+....+
T Consensus        16 ~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s   95 (104)
T d1nbqa2          16 IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTS   95 (104)
T ss_dssp             TTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEEC
T ss_pred             cCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCceEEE
Confidence            489999999984 7889999999998776331                13578999999999999999999998876665


Q ss_pred             eeEEE
Q psy12725         64 GELKL   68 (119)
Q Consensus        64 ~~~~v   68 (119)
                      ..+.+
T Consensus        96 ~~v~v  100 (104)
T d1nbqa2          96 NAVRM  100 (104)
T ss_dssp             CCBCC
T ss_pred             EEEEE
Confidence            55444

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.54  E-value=1.8e-14  Score=70.19  Aligned_cols=59  Identities=27%  Similarity=0.401  Sum_probs=50.4

Q ss_pred             CCccEEEEEEeccCCCC-eeEEeeCCccCCCC--------CCCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          1 MLALKFFTCKYEGNPVK-TISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~-~v~w~~~~~~~~~~--------~~~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      .|+.+.|.|.+.+.|.+ .+.|++++..+...        ....|.|..+..+|.|.|.|.+.|..+.
T Consensus        16 ~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~   83 (94)
T d1biha1          16 ENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGV   83 (94)
T ss_dssp             TTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCCCE
Confidence            48999999999998865 79999999877532        3468999999999999999999998764

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.5e-14  Score=71.80  Aligned_cols=68  Identities=15%  Similarity=0.186  Sum_probs=51.3

Q ss_pred             CCccEEEEEEeccCC-CCeeEEeeCCccCCCC--------------CCCeEEEecCCCCCCeEEEEEEEcCCCCce-eEe
Q psy12725          1 MLALKFFTCKYEGNP-VKTISWMKDGKPVPDH--------------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQ-ASG   64 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~-~~~v~w~~~~~~~~~~--------------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~-~~~   64 (119)
                      +|+++.|.|.+.+.| .|.++|+|++..+...              ....|.|.+++.+|.|.|.|.+.|..+... ...
T Consensus        17 ~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~~~   96 (104)
T d2aw2a1          17 AGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHST   96 (104)
T ss_dssp             TTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             CCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeEEEEEE
Confidence            599999999999988 5899999987654210              112488999999999999999999875432 234


Q ss_pred             eEEE
Q psy12725         65 ELKL   68 (119)
Q Consensus        65 ~~~v   68 (119)
                      .+.|
T Consensus        97 ~l~V  100 (104)
T d2aw2a1          97 TLYV  100 (104)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.9e-14  Score=70.83  Aligned_cols=64  Identities=19%  Similarity=0.413  Sum_probs=51.1

Q ss_pred             EEEEEEeccCCCCeeEEeeCCccCCCCC-------------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          5 KFFTCKYEGNPVKTISWMKDGKPVPDHN-------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         5 ~~l~c~~~~~~~~~v~w~~~~~~~~~~~-------------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      ..+.|.+.|.|.|.+.|+++++.+....             ...|.|..++..|.|.|+|.+.|..+.......+.+
T Consensus        20 ~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V   96 (105)
T d1wwca_          20 HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF   96 (105)
T ss_dssp             EEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEE
Confidence            4577899999999999999998875421             145899999999999999999999776655555554

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.2e-14  Score=71.50  Aligned_cols=66  Identities=15%  Similarity=0.278  Sum_probs=53.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCCC---------------------CCeEEEecCCCCCCe-EEEEEEEcCCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDHN---------------------EPVFRIDSVRKEDKG-MYQCVIRNEQE   58 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~---------------------~~~l~~~~~~~~d~g-~y~C~~~~~~~   58 (119)
                      +|+.+.|.|.+.+.|.+.+.|++++..+....                     .+.|.|..++.+|.| .|+|.+.|..+
T Consensus        16 ~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~N~~G   95 (107)
T d1iray3          16 LGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG   95 (107)
T ss_dssp             TTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEECSSC
T ss_pred             CCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEEeCCC
Confidence            58999999999999999999999987764311                     146999999999999 59999999987


Q ss_pred             CceeEeeE
Q psy12725         59 SAQASGEL   66 (119)
Q Consensus        59 ~~~~~~~~   66 (119)
                      .....+.+
T Consensus        96 ~~~~~i~L  103 (107)
T d1iray3          96 IDAAYIQL  103 (107)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEE
Confidence            66554443

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=4.6e-14  Score=69.13  Aligned_cols=59  Identities=29%  Similarity=0.666  Sum_probs=47.3

Q ss_pred             CCccEEEEEEeccCCC-CeeEEeeC-CccCCCC-----------CCCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          1 MLALKFFTCKYEGNPV-KTISWMKD-GKPVPDH-----------NEPVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~-~~v~w~~~-~~~~~~~-----------~~~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      +|+.+.|.|.+.+.|. +.+.|+++ +..+...           ....|.|.+++..|.|.|.|.+.|..+.
T Consensus        14 ~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   85 (97)
T d1epfa1          14 VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGT   85 (97)
T ss_dssp             TTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTE
T ss_pred             cCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCc
Confidence            4899999999998874 79999984 4433221           2357999999999999999999998764

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.9e-14  Score=69.75  Aligned_cols=67  Identities=15%  Similarity=0.305  Sum_probs=54.0

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCCC--------------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDHN--------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~--------------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      +....+.|.+.|.|.|.+.|++++..+....              ...|.|..++..|.|.|+|.+.|..+.....+.+.
T Consensus        16 ~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~   95 (103)
T d1wwbx_          16 DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH   95 (103)
T ss_dssp             CCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEC
T ss_pred             ceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEEE
Confidence            3456788999999999999999998875421              13689999999999999999999987776565555


Q ss_pred             E
Q psy12725         68 L   68 (119)
Q Consensus        68 v   68 (119)
                      +
T Consensus        96 V   96 (103)
T d1wwbx_          96 F   96 (103)
T ss_dssp             C
T ss_pred             E
Confidence            4

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=7.4e-14  Score=68.83  Aligned_cols=68  Identities=22%  Similarity=0.360  Sum_probs=50.7

Q ss_pred             CCccEEEEEEeccCCCC-eeEEeeCCccCCC---------------CCCCeEEEecCC-CCCCeEEEEEEEcCCCCceeE
Q psy12725          1 MLALKFFTCKYEGNPVK-TISWMKDGKPVPD---------------HNEPVFRIDSVR-KEDKGMYQCVIRNEQESAQAS   63 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~-~v~w~~~~~~~~~---------------~~~~~l~~~~~~-~~d~g~y~C~~~~~~~~~~~~   63 (119)
                      .|+.+.|.|.+.+.|.+ .+.|++++.....               .....|.|.++. ..|.|.|.|.+.|..+.....
T Consensus        16 ~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~   95 (101)
T d3b5ha1          16 EGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAI   95 (101)
T ss_dssp             TTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEE
T ss_pred             cCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEEEEEECCCEEEEE
Confidence            48999999999998876 7999987533211               123478888888 479999999999998766555


Q ss_pred             eeEEE
Q psy12725         64 GELKL   68 (119)
Q Consensus        64 ~~~~v   68 (119)
                      ..+.|
T Consensus        96 ~~L~V  100 (101)
T d3b5ha1          96 ITLRV  100 (101)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44443

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.8e-14  Score=70.37  Aligned_cols=69  Identities=23%  Similarity=0.388  Sum_probs=55.6

Q ss_pred             CCccEEEEEEec-cCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEEe
Q psy12725          1 MLALKFFTCKYE-GNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKLG   69 (119)
Q Consensus         1 ~g~~~~l~c~~~-~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~   69 (119)
                      .|+.+.|.|.+. +.+.+.|.|||++..+...         ....|.|.+++..|.|.|.|.+.|..+.....+.+.|.
T Consensus        16 ~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L~V~   94 (101)
T d1iray1          16 ANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFV   94 (101)
T ss_dssp             TTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeEEEEEEEEEE
Confidence            378999999885 5688999999988654321         24689999999999999999999988777666666664

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.51  E-value=8.6e-15  Score=71.78  Aligned_cols=59  Identities=25%  Similarity=0.461  Sum_probs=48.6

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCC--------CCCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      |+.+.|.|.+.|.|.+.+.|++++..+...        ....+.+..+..+|.|.|.|.+.|..+..
T Consensus        22 ~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~   88 (97)
T d1cs6a1          22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTV   88 (97)
T ss_dssp             CCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEE
T ss_pred             CCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEEECCCEE
Confidence            478999999999999999999999887543        23456677788899999999999987643

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.50  E-value=2e-14  Score=71.41  Aligned_cols=61  Identities=18%  Similarity=0.238  Sum_probs=50.1

Q ss_pred             CCccEEEEEEe-ccCCCCeeEEeeCCccCCC---------CCCCeEEEecCCCCCCeEEEEEEEcCCCCce
Q psy12725          1 MLALKFFTCKY-EGNPVKTISWMKDGKPVPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ   61 (119)
Q Consensus         1 ~g~~~~l~c~~-~~~~~~~v~w~~~~~~~~~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~   61 (119)
                      .|+.+.|.|.+ .+.|.+.|.|++++..+..         .....|.|.+++.+|.|.|.|.+.|..+...
T Consensus        18 eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~   88 (105)
T d1cs6a2          18 EGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFIT   88 (105)
T ss_dssp             TTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             CCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEE
Confidence            48999999997 6778899999999876532         2346799999999999999999998765544

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.2e-14  Score=69.73  Aligned_cols=57  Identities=19%  Similarity=0.237  Sum_probs=47.4

Q ss_pred             CCccEEEEEEeccCCC-CeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPV-KTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~-~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.+.|.|.+.+.+. +.|.|+|++..+...      .+..|.|.+++.+|+|.|+|.+.+..
T Consensus        20 ~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T d1n26a1          20 PGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP   83 (93)
T ss_dssp             TTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESSSSC
T ss_pred             CCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEECCcc
Confidence            4899999999988664 589999998877543      34679999999999999999887643

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=9.4e-14  Score=68.60  Aligned_cols=59  Identities=22%  Similarity=0.365  Sum_probs=49.3

Q ss_pred             CCccEEEEE------EeccCCCCeeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          1 MLALKFFTC------KYEGNPVKTISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         1 ~g~~~~l~c------~~~~~~~~~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      +|+...|.|      ...+.|.|.|.|++|+..+...      .+..|.|.++..+|+|.|+|.+.|..+.
T Consensus        13 ~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2          13 VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLG   83 (103)
T ss_dssp             SSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             cCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCC
Confidence            478899999      5677788999999999988543      2467999999999999999999986543

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2e-13  Score=67.91  Aligned_cols=62  Identities=18%  Similarity=0.368  Sum_probs=49.7

Q ss_pred             EEEEeccCCCCeeEEeeCCccCCCCC----------------CCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          7 FTCKYEGNPVKTISWMKDGKPVPDHN----------------EPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         7 l~c~~~~~~~~~v~w~~~~~~~~~~~----------------~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      +.|.+.|.|.+.+.|+++++.+....                ...|.|.++...|.|.|.|.+.|..+.....+.+.+
T Consensus        20 i~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~v   97 (107)
T d1he7a_          20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF   97 (107)
T ss_dssp             EEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEEEEE
Confidence            55689999999999999998875321                135899999999999999999999876655555554

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.7e-13  Score=65.42  Aligned_cols=55  Identities=15%  Similarity=0.323  Sum_probs=45.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC-----------CCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH-----------NEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~-----------~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      +|+.+.|.|.+. .|.+.+.||+++..+...           ....|.|.+++.+|+|.|.|++.+.
T Consensus        14 ~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   79 (90)
T d1x44a1          14 CGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG   79 (90)
T ss_dssp             TTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE
T ss_pred             CCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc
Confidence            489999999995 588899999998776432           1247899999999999999998763

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.44  E-value=2.6e-13  Score=64.83  Aligned_cols=55  Identities=20%  Similarity=0.401  Sum_probs=46.8

Q ss_pred             CCccEEEEEEeccCCCC-eeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVK-TISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~-~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|.+.+.+.+ .+.|++|+..+.. ....|.|..++.+|.|.|.|.+.+.
T Consensus        18 ~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~-~~~~l~i~~v~~~dsG~Y~C~a~ns   73 (85)
T d2fcba1          18 QEDSVTLTCRGTHSPESDSIQWFHNGNLIPT-HTQPSYRFKANNNDSGEYTCQTGQT   73 (85)
T ss_dssp             TTCEEEEEEECSSCCCTTCCEEEETTEECTT-CCSSEEEEECCGGGCEEEEEECTTS
T ss_pred             CCCeEEEEEEEeeccceeEEEeecccccccc-cccceEEeeccccCCcEEEEECCCC
Confidence            38999999999887655 6889999988764 4567999999999999999998765

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.9e-13  Score=65.86  Aligned_cols=55  Identities=20%  Similarity=0.383  Sum_probs=45.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC----------CCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH----------NEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~----------~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.+.|.|.+. .|.+.+.||+++..+...          ....|.|.++...|.|.|+|.+.+.
T Consensus        20 ~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~   84 (94)
T d1pd6a_          20 KGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE   84 (94)
T ss_dssp             TTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTE
T ss_pred             cCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEeeE
Confidence            489999999985 488899999999877542          1246999999999999999998663

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.40  E-value=2.3e-13  Score=64.87  Aligned_cols=56  Identities=16%  Similarity=0.354  Sum_probs=46.1

Q ss_pred             CCccEEEEEEeccCCCCe-eEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKT-ISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~-v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.++|.|.+.+.+.+. +.|++++..+. .....|.|..++..|+|.|.|.+.+..
T Consensus        19 ~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~~s~   75 (84)
T d1fnla1          19 EKDSVTLKCQGAYSPEDNSTQWFHNESLIS-SQASSYFIDAATVNDSGEYRCQTNLST   75 (84)
T ss_dssp             TTCCEEEEEECCCBTTBCCCEEEETTEEEE-SSCSEEEESSCCGGGCEEEEEECSSSC
T ss_pred             CCCeEEEEEEeccCCCCeEEEEeeeceeee-ecceeeEecCCcccCCEEEEEEccCCC
Confidence            489999999999887664 66788887765 356789999999999999999987643

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=8.1e-13  Score=64.45  Aligned_cols=61  Identities=23%  Similarity=0.312  Sum_probs=45.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEee-C-Cc-cCCC---------CCCCeEEEecCCCCCCeEEEEEEEcCCCCce
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMK-D-GK-PVPD---------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQ   61 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~-~-~~-~~~~---------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~   61 (119)
                      .|+.+.|.|.+.|.|.|.+.|++ + +. ....         .....|.|.++..+|+|.|+|.+.|..+...
T Consensus        15 ~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   87 (96)
T d2c9aa1          15 AGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGI   87 (96)
T ss_dssp             SSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEEETTEEEE
T ss_pred             CCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEEeCCCeEE
Confidence            48999999999999888766543 2 21 1111         0124699999999999999999999876543

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.37  E-value=5.6e-13  Score=66.69  Aligned_cols=66  Identities=18%  Similarity=0.185  Sum_probs=51.2

Q ss_pred             CCccEEEEEEe-ccCCCCeeEEeeCCccCCC-------------CCCCeEEEecCCCCCCe---EEEEEEEcCCCCceeE
Q psy12725          1 MLALKFFTCKY-EGNPVKTISWMKDGKPVPD-------------HNEPVFRIDSVRKEDKG---MYQCVIRNEQESAQAS   63 (119)
Q Consensus         1 ~g~~~~l~c~~-~~~~~~~v~w~~~~~~~~~-------------~~~~~l~~~~~~~~d~g---~y~C~~~~~~~~~~~~   63 (119)
                      .|+.+.|.|.+ .|.|.|.+.|+|++..+..             .....|.|.+++..|.|   .|.|.+.|..+.....
T Consensus        16 EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~~~   95 (111)
T d1biha2          16 EGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVV   95 (111)
T ss_dssp             TTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEE
T ss_pred             CCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCCceEE
Confidence            38999999996 7899999999997655421             13467999999988766   6999999998766544


Q ss_pred             eeE
Q psy12725         64 GEL   66 (119)
Q Consensus        64 ~~~   66 (119)
                      ..+
T Consensus        96 ~~~   98 (111)
T d1biha2          96 LVE   98 (111)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.9e-13  Score=63.77  Aligned_cols=56  Identities=18%  Similarity=0.296  Sum_probs=44.5

Q ss_pred             CCccEEEEEEeccCCCC-eeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVK-TISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~-~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.++|.|.+.+.+.+ .+.|++++..+. .....|.|..++..|.|.|.|.+.+..
T Consensus        15 ~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~v~~~d~G~Y~C~a~~s~   71 (82)
T d1f2qa1          15 KGENVTLTCNGNNFFEVSSTKWFHNGSLSE-ETNSSLNIVNAKFEDSGEYKCQHQQVN   71 (82)
T ss_dssp             TTCCEEEECCTTCC----CCEEEETTEECS-CCSSEEEECSCCGGGCEEEEEECTTSS
T ss_pred             CCCeEEEEEEEeeeeeecceeeeeeeeeee-cccceeEECCCChhhCCcEEEEecCCC
Confidence            38999999999988766 466788887775 356789999999999999999987653

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.5e-12  Score=64.30  Aligned_cols=67  Identities=13%  Similarity=0.166  Sum_probs=49.9

Q ss_pred             CCccEEEEEEecc-CCCC--eeEEeeCCccCCCC------CCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEE
Q psy12725          1 MLALKFFTCKYEG-NPVK--TISWMKDGKPVPDH------NEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELK   67 (119)
Q Consensus         1 ~g~~~~l~c~~~~-~~~~--~v~w~~~~~~~~~~------~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~   67 (119)
                      +|+.++|.|.+.| .|.+  .+.|++++..+...      ..+.|.|...+.+|.|.|+|++.|..+.......+.
T Consensus        18 ~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~~~~   93 (103)
T d1iama1          18 VGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFEN   93 (103)
T ss_dssp             TTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEE
T ss_pred             CCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEeCCCCccCeEeee
Confidence            4999999999986 3544  58899998776431      235688888888999999999999876554444333

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.34  E-value=1.1e-13  Score=66.73  Aligned_cols=55  Identities=13%  Similarity=0.230  Sum_probs=46.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC---------CCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH---------NEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~---------~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.+.|.|.+ +.|.+.+.|++|+..+...         ....|.|.+++..|+|.|.|.+.+.
T Consensus        15 ~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~   78 (89)
T d1tiua_          15 VGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANA   78 (89)
T ss_dssp             TTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSC
T ss_pred             CCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECce
Confidence            48999999998 4688899999999887543         2357999999999999999998664

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2e-12  Score=62.63  Aligned_cols=57  Identities=18%  Similarity=0.273  Sum_probs=45.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC-------------------CCCCeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD-------------------HNEPVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~-------------------~~~~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      +|+.|+|.|... .|.+.|.|++++..+..                   ....+|.|.+++.+|+|.|.|.+.+...
T Consensus         9 ~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~~   84 (93)
T d1ccza1           9 VYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD   84 (93)
T ss_dssp             TTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCCS
T ss_pred             ECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECCCc
Confidence            599999999864 57889999998754410                   1346899999999999999999877643

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3.3e-12  Score=63.34  Aligned_cols=60  Identities=10%  Similarity=0.164  Sum_probs=43.0

Q ss_pred             CCccEEEEEEecc-C--CCCeeEEeeCCccCCCC---------C--CCeEEEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          1 MLALKFFTCKYEG-N--PVKTISWMKDGKPVPDH---------N--EPVFRIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         1 ~g~~~~l~c~~~~-~--~~~~v~w~~~~~~~~~~---------~--~~~l~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      .|+.++|.|.+.| .  |.+.+.|+++++.+...         .  .+.|.+.....+|.|.|+|++.|..+..
T Consensus        16 ~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~   89 (106)
T d1zxqa1          16 VGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSR   89 (106)
T ss_dssp             TTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGG
T ss_pred             CCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCC
Confidence            4899999999986 3  34579999998776321         1  1245555556677789999999986543

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=1.9e-11  Score=59.69  Aligned_cols=68  Identities=12%  Similarity=0.220  Sum_probs=48.5

Q ss_pred             CCccEEEEEEec-cC-CCCeeEEeeCCccCCC----------------CCCCeEEEecCCCCCCeEEEEEEEcCCCCcee
Q psy12725          1 MLALKFFTCKYE-GN-PVKTISWMKDGKPVPD----------------HNEPVFRIDSVRKEDKGMYQCVIRNEQESAQA   62 (119)
Q Consensus         1 ~g~~~~l~c~~~-~~-~~~~v~w~~~~~~~~~----------------~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~   62 (119)
                      +|+.|+|.|... .. ....|.|++++..+..                ..+.+|.|.+++.+|+|.|.|.+.+..+....
T Consensus         9 ~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~   88 (98)
T d1hnga1           9 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRIL   88 (98)
T ss_dssp             TTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEEE
T ss_pred             cCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCCCEEE
Confidence            599999999642 22 2347999987654410                13468999999999999999999988776544


Q ss_pred             EeeEEE
Q psy12725         63 SGELKL   68 (119)
Q Consensus        63 ~~~~~v   68 (119)
                      ...+.+
T Consensus        89 ~~~~~L   94 (98)
T d1hnga1          89 NKALDL   94 (98)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            444333

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=6.4e-11  Score=60.22  Aligned_cols=68  Identities=22%  Similarity=0.384  Sum_probs=46.2

Q ss_pred             CCccEEEEEEeccC---CCCeeEEeeCCccCC---------------C--------------CCCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGN---PVKTISWMKDGKPVP---------------D--------------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~---~~~~v~w~~~~~~~~---------------~--------------~~~~~l~~~~~~~~d~g~   48 (119)
                      +|+.|+|.|.+...   ....+.|++.+....               .              ....+|.|.+++.+|+|.
T Consensus        16 ~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~   95 (126)
T d1pkoa_          16 VGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGG   95 (126)
T ss_dssp             TTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGGGCEE
T ss_pred             cCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchhHCeE
Confidence            48999999997532   234689998542110               0              013579999999999999


Q ss_pred             EEEEEEcCCCCceeEeeEEE
Q psy12725         49 YQCVIRNEQESAQASGELKL   68 (119)
Q Consensus        49 y~C~~~~~~~~~~~~~~~~v   68 (119)
                      |.|.+.+..+.....+.+.|
T Consensus        96 Y~C~v~~~~~~~~~~v~L~V  115 (126)
T d1pkoa_          96 YTCFFRDHSYQEEAAVELKV  115 (126)
T ss_dssp             EEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEEEE
Confidence            99999987554444444444

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.6e-12  Score=65.34  Aligned_cols=69  Identities=17%  Similarity=0.255  Sum_probs=52.9

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeCCccCCCCC---------------CCeEEEecCCCCC-CeEEEEEEEcCCCCceeE
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKDGKPVPDHN---------------EPVFRIDSVRKED-KGMYQCVIRNEQESAQAS   63 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~~~~~~~~~---------------~~~l~~~~~~~~d-~g~y~C~~~~~~~~~~~~   63 (119)
                      .|+.+.|.|.+.+. +.+.+.|++++..+....               ...|.|.++...| .|.|.|.+.|..+.....
T Consensus        20 ~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~~~~~   99 (115)
T d2crya1          20 HGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEI   99 (115)
T ss_dssp             TTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEE
T ss_pred             cCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCCeEEEE
Confidence            48899999999885 456799999887664310               1358888899998 699999999998877666


Q ss_pred             eeEEEe
Q psy12725         64 GELKLG   69 (119)
Q Consensus        64 ~~~~v~   69 (119)
                      +.+.+.
T Consensus       100 ~~L~V~  105 (115)
T d2crya1         100 IRLKEQ  105 (115)
T ss_dssp             ECCCCS
T ss_pred             EEEEEE
Confidence            666553

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=6e-10  Score=56.25  Aligned_cols=68  Identities=18%  Similarity=0.384  Sum_probs=45.0

Q ss_pred             CCccEEEEEEeccCC----CCeeEEeeCCccC----------------C---C--------------CCCCeEEEecCCC
Q psy12725          1 MLALKFFTCKYEGNP----VKTISWMKDGKPV----------------P---D--------------HNEPVFRIDSVRK   43 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~----~~~v~w~~~~~~~----------------~---~--------------~~~~~l~~~~~~~   43 (119)
                      .|+.|.|.|.+...+    ...+.|++.....                .   .              ....+|.|.+++.
T Consensus        18 ~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~   97 (124)
T d1eaja_          18 KGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQL   97 (124)
T ss_dssp             TTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEECSCCG
T ss_pred             CCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEcccEE
Confidence            489999999986432    2358898621110                0   0              0124799999999


Q ss_pred             CCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725         44 EDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus        44 ~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+|.|.|.+.+..+.....+.+.|
T Consensus        98 ~D~G~Y~C~v~~~~~~~~~~~~L~V  122 (124)
T d1eaja_          98 SDIGTYQCKVKKAPGVANKKIHLVV  122 (124)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ccCEEEEEEEEECCCeEEeEEEEEE
Confidence            9999999999887554444444443

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=8.8e-10  Score=52.24  Aligned_cols=43  Identities=26%  Similarity=0.558  Sum_probs=36.7

Q ss_pred             CeeeecCCccccCCCCcEEEEeEEccCCCC-eEEEEECCEEccc
Q psy12725         75 PVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVN  117 (119)
Q Consensus        75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~  117 (119)
                      |.+...+.+..+.+|+.+.|.|.+.|.|.| .+.|+|||..+..
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~   45 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGG   45 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSC
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCC
Confidence            456666667778899999999999999988 8999999998864

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=1e-09  Score=54.20  Aligned_cols=57  Identities=12%  Similarity=0.183  Sum_probs=42.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC-------------------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD-------------------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~-------------------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|.|.|.........+.|+|.......                         ..+.+|.|.+++.+|+|.|.|.+.+
T Consensus        13 ~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~v~~   92 (107)
T d1l6za1          13 EDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTD   92 (107)
T ss_dssp             TTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEEEEE
Confidence            489999999854434668999985422100                         1346899999999999999999976


Q ss_pred             CC
Q psy12725         56 EQ   57 (119)
Q Consensus        56 ~~   57 (119)
                      ..
T Consensus        93 ~~   94 (107)
T d1l6za1          93 EN   94 (107)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.98  E-value=4.5e-10  Score=53.73  Aligned_cols=44  Identities=30%  Similarity=0.701  Sum_probs=37.6

Q ss_pred             CeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcccC
Q psy12725         75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  118 (119)
Q Consensus        75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~  118 (119)
                      |.+...+.+..+..|+.+.|.|.+.|.|.|.+.|++||..+..+
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~   45 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQ   45 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCC
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeecccccc
Confidence            45666666777889999999999999999999999999988753

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.7e-10  Score=56.07  Aligned_cols=55  Identities=16%  Similarity=0.276  Sum_probs=41.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCC--------------------------CCCCCeEEEecCCCCCCeEEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVP--------------------------DHNEPVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~--------------------------~~~~~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      .|++|+|.|.........+.|++......                          .....+|.|.+++.+|+|.|.|.+.
T Consensus         8 ~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~v~   87 (97)
T d2nxyb1           8 KGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVE   87 (97)
T ss_dssp             TTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEEET
T ss_pred             cCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEEEEEe
Confidence            49999999998776677899997432110                          0123579999999999999999986


Q ss_pred             c
Q psy12725         55 N   55 (119)
Q Consensus        55 ~   55 (119)
                      +
T Consensus        88 ~   88 (97)
T d2nxyb1          88 D   88 (97)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.94  E-value=1.6e-09  Score=52.53  Aligned_cols=44  Identities=18%  Similarity=0.376  Sum_probs=38.1

Q ss_pred             CeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcccC
Q psy12725         75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  118 (119)
Q Consensus        75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~  118 (119)
                      |.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..+
T Consensus         2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~   45 (97)
T d1koaa1           2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQS   45 (97)
T ss_dssp             CEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSB
T ss_pred             CEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeecccee
Confidence            56666677777889999999999999999999999999998653

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.9e-09  Score=52.49  Aligned_cols=67  Identities=21%  Similarity=0.251  Sum_probs=46.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCC----------CCCCCeEEEecCCCCCCeEEEEEEEcCCCCceeEeeEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVP----------DHNEPVFRIDSVRKEDKGMYQCVIRNEQESAQASGELKL   68 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~----------~~~~~~l~~~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v   68 (119)
                      .|+.|+|.|.... +...+.|++++....          ......+.|..++..|.|.|.|...+...-...+..+.+
T Consensus        20 ~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~Sdpl~L   96 (99)
T d1ucta1          20 LDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLEL   96 (99)
T ss_dssp             TTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEE
T ss_pred             CCCeEEEEEcCCC-CCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECCCcccCCCCCEEE
Confidence            3899999998763 556888998764221          123467899999999999999998876432333444443

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.92  E-value=9.2e-10  Score=53.51  Aligned_cols=45  Identities=31%  Similarity=0.646  Sum_probs=38.7

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcccC
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  118 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~  118 (119)
                      +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++|+..+..+
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~   48 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERS   48 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeee
Confidence            466666677777889999999999999999999999999988754

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.7e-09  Score=51.04  Aligned_cols=54  Identities=17%  Similarity=0.201  Sum_probs=41.6

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCC--------CCCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVP--------DHNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~--------~~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      |+.|+|.|.... ....+.|+|++....        ......+.|..++..|.|.|.|...+.
T Consensus        18 G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~   79 (95)
T d1olla1          18 EKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVG   79 (95)
T ss_dssp             TCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCcEEEEEecCC-CccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCC
Confidence            899999998754 456788999875321        112357899999999999999997764

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=98.88  E-value=1.4e-09  Score=53.18  Aligned_cols=45  Identities=24%  Similarity=0.595  Sum_probs=38.3

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcccC
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  118 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~  118 (119)
                      +|.+...+.+..+..|+.+.|.|.+.|.|.|.+.|++||..+..+
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~   52 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES   52 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCS
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccce
Confidence            456666666777889999999999999999999999999998754

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.88  E-value=5.7e-09  Score=52.29  Aligned_cols=58  Identities=12%  Similarity=0.349  Sum_probs=38.9

Q ss_pred             CCccEEEEEEeccC----CCCeeEEeeCCc--c----C---------C-C---------------CCCCeEEEecCCCCC
Q psy12725          1 MLALKFFTCKYEGN----PVKTISWMKDGK--P----V---------P-D---------------HNEPVFRIDSVRKED   45 (119)
Q Consensus         1 ~g~~~~l~c~~~~~----~~~~v~w~~~~~--~----~---------~-~---------------~~~~~l~~~~~~~~d   45 (119)
                      +|+.|+|.|.....    ....+.|++...  .    +         . .               ....+|.|.+++..|
T Consensus        13 ~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   92 (119)
T d1neua_          13 VGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSD   92 (119)
T ss_dssp             TTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSCCGGG
T ss_pred             eCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEECCCChHH
Confidence            49999999997532    234789986211  0    0         0 0               022579999999999


Q ss_pred             CeEEEEEEEcCCC
Q psy12725         46 KGMYQCVIRNEQE   58 (119)
Q Consensus        46 ~g~y~C~~~~~~~   58 (119)
                      +|.|.|.+.+...
T Consensus        93 sG~Y~C~v~~~~~  105 (119)
T d1neua_          93 NGTFTCDVKNPPD  105 (119)
T ss_dssp             CEEEEEEEEC---
T ss_pred             CEEEEEEEEECCC
Confidence            9999999987543

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2.8e-08  Score=47.95  Aligned_cols=57  Identities=19%  Similarity=0.262  Sum_probs=43.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC-----CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD-----HNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~-----~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.|+|.|.....+...+.|+|++.....     .....+.+..++..|.|.|.|......
T Consensus        18 ~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~   79 (96)
T d1ucta2          18 PGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNR   79 (96)
T ss_dssp             TTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             CCCeEEEEEeCCCCCceEEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEcCC
Confidence            489999999874445557889998865433     234678899999999999999887543

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.80  E-value=2.1e-09  Score=51.69  Aligned_cols=44  Identities=16%  Similarity=0.254  Sum_probs=37.5

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      +|.+...+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+..
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~   45 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAAL   45 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBC
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeecee
Confidence            46666666677789999999999999999999999999987764

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.79  E-value=8.6e-09  Score=49.42  Aligned_cols=43  Identities=16%  Similarity=0.379  Sum_probs=36.6

Q ss_pred             CeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      +.+...|.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+..
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~   44 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVIL   44 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGG
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCccccc
Confidence            3455566677889999999999999999999999999988764

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=3.9e-09  Score=50.63  Aligned_cols=43  Identities=16%  Similarity=0.436  Sum_probs=36.8

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcc
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~  116 (119)
                      .|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~   44 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQS   44 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSS
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceee
Confidence            4666766777788999999999999999999999999987654

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.79  E-value=3.6e-09  Score=50.50  Aligned_cols=43  Identities=21%  Similarity=0.492  Sum_probs=34.8

Q ss_pred             CeeeecCCc-cccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         75 PVIKESFSD-ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        75 ~~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      |.+...+.. ..+.+|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus         3 P~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~   46 (89)
T d1biha4           3 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG   46 (89)
T ss_dssp             EEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCS
T ss_pred             CeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCcc
Confidence            455544433 3578999999999999999999999999998864

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.78  E-value=1.9e-08  Score=48.39  Aligned_cols=55  Identities=18%  Similarity=0.440  Sum_probs=41.0

Q ss_pred             CccEEEEEEeccCCCCeeEEeeC--CccCC------C----------------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKD--GKPVP------D----------------HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~--~~~~~------~----------------~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      |+.|+|.|.........+.|||.  ++...      .                ....+|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            89999999987766778999972  21110      0                11247999999999999999988754

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.78  E-value=1.6e-08  Score=49.75  Aligned_cols=56  Identities=25%  Similarity=0.404  Sum_probs=40.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC--------------C-------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP--------------D-------HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~--------------~-------~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|.........+.||+-  +..+.              .       .....|.|.+++.+|++.|.|.+...
T Consensus        14 ~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~YyCa~~~~   92 (106)
T d1a0ql1          14 LGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYYCLQYYN   92 (106)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSS
T ss_pred             CCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEEEEEeCC
Confidence            489999999986655557999972  21110              0       12357999999999999999986543

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.77  E-value=1.7e-08  Score=50.31  Aligned_cols=57  Identities=19%  Similarity=0.429  Sum_probs=42.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccCC-----------------------CCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPVP-----------------------DHNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~~-----------------------~~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.........+.||+..  ....                       .....+|.|..++.+|+|.|.|.+..
T Consensus        14 ~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y~Ca~~~   93 (114)
T d2cdea1          14 EGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICVVSD   93 (114)
T ss_dssp             TTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEEEEEEEC
T ss_pred             CCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcccceeeec
Confidence            4899999999877666789999732  1110                       01235699999999999999999887


Q ss_pred             CC
Q psy12725         56 EQ   57 (119)
Q Consensus        56 ~~   57 (119)
                      ..
T Consensus        94 ~~   95 (114)
T d2cdea1          94 RG   95 (114)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=6.4e-09  Score=50.72  Aligned_cols=43  Identities=14%  Similarity=0.181  Sum_probs=35.4

Q ss_pred             eeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcccC
Q psy12725         76 VIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  118 (119)
Q Consensus        76 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~  118 (119)
                      .+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..+
T Consensus         2 ~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~   44 (101)
T d2cqva1           2 QIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES   44 (101)
T ss_dssp             EESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCS
T ss_pred             eEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccC
Confidence            3444455667889999999999999999999999999887653

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.73  E-value=3.3e-08  Score=48.65  Aligned_cols=55  Identities=22%  Similarity=0.331  Sum_probs=40.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCCC---------------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.........+.|||.  +..+..                     .....|.|.+++.+|+|.|.|...+
T Consensus        15 ~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1j1pl_          15 PGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQAN   92 (107)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEEEEcCC
Confidence            489999999987655667999973  222200                     1235799999999999999997654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=3.5e-08  Score=49.72  Aligned_cols=55  Identities=22%  Similarity=0.474  Sum_probs=40.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEee--CCccCC---------C-----------------------CCCCeEEEecCCCCCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMK--DGKPVP---------D-----------------------HNEPVFRIDSVRKEDK   46 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~--~~~~~~---------~-----------------------~~~~~l~~~~~~~~d~   46 (119)
                      +|+.|+|.|.+.+.....+.|||  .+..+.         .                       .....|.|.+++.+|.
T Consensus        15 ~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I~~~~~~Ds   94 (122)
T d1nezg_          15 LGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENE   94 (122)
T ss_dssp             TTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEESSCCGGGC
T ss_pred             CCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEEcccccCCC
Confidence            59999999998776667899997  222110         0                       0113699999999999


Q ss_pred             eEEEEEEEc
Q psy12725         47 GMYQCVIRN   55 (119)
Q Consensus        47 g~y~C~~~~   55 (119)
                      |.|.|.+..
T Consensus        95 g~YyCa~~~  103 (122)
T d1nezg_          95 GYYFCSVIS  103 (122)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEeeEeC
Confidence            999998764

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.72  E-value=9.6e-08  Score=47.55  Aligned_cols=56  Identities=13%  Similarity=0.226  Sum_probs=41.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCCC-----------------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVPD-----------------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~~-----------------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.........+.|||.  ++.+..                       .....|.|.+++.+|+|.|.|.+..
T Consensus        15 ~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~   94 (115)
T d1lp9e1          15 EGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALFL   94 (115)
T ss_dssp             TTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccceEEEEc
Confidence            489999999987666678999973  211100                       1235699999999999999998765


Q ss_pred             C
Q psy12725         56 E   56 (119)
Q Consensus        56 ~   56 (119)
                      .
T Consensus        95 ~   95 (115)
T d1lp9e1          95 A   95 (115)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.70  E-value=8e-08  Score=47.25  Aligned_cols=55  Identities=22%  Similarity=0.327  Sum_probs=40.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCCC---------------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.........+.|||.  +.....                     .....|.|.+++.+|++.|.|....
T Consensus        15 ~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~YyCa~~~   92 (107)
T d1kcvl1          15 VGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYYCGQSY   92 (107)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceEEEEecC
Confidence            489999999987665567999973  221100                     1235699999999999999997653

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.1e-08  Score=50.02  Aligned_cols=56  Identities=20%  Similarity=0.363  Sum_probs=37.8

Q ss_pred             CCccEEEEEEeccC---CCCeeEEeeCCc--cC------C-----------------CCCCCeEEEecCCCCCCeEEEEE
Q psy12725          1 MLALKFFTCKYEGN---PVKTISWMKDGK--PV------P-----------------DHNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         1 ~g~~~~l~c~~~~~---~~~~v~w~~~~~--~~------~-----------------~~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      .|++|+|.|.....   ....+.|+|...  .+      .                 .....+|.|.+++.+|+|.|.|.
T Consensus        13 ~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~   92 (116)
T d1xeda_          13 EGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCG   92 (116)
T ss_dssp             TTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCCCEEEEEE
Confidence            48999999987532   123577987321  11      0                 01224799999999999999998


Q ss_pred             EEcC
Q psy12725         53 IRNE   56 (119)
Q Consensus        53 ~~~~   56 (119)
                      +...
T Consensus        93 v~~~   96 (116)
T d1xeda_          93 LGIN   96 (116)
T ss_dssp             ESCG
T ss_pred             EEcC
Confidence            8644

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=1.6e-08  Score=49.09  Aligned_cols=44  Identities=36%  Similarity=0.678  Sum_probs=34.4

Q ss_pred             CCeeeecCC--ccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         74 PPVIKESFS--DETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ||.+...+.  ...+..|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~   48 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN   48 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCC
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCccccc
Confidence            455554333  23467899999999999999999999999998864

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=3.9e-08  Score=48.17  Aligned_cols=56  Identities=25%  Similarity=0.403  Sum_probs=40.3

Q ss_pred             CCccEEEEEEeccCCC----CeeEEeeCCccC--------------------CCCCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPV----KTISWMKDGKPV--------------------PDHNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~----~~v~w~~~~~~~--------------------~~~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      +|+.|+|.|.......    ..+.|.+++..+                    ......+|.|.+++.+|+|.|.|.+.+.
T Consensus         8 ~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~V~~~   87 (105)
T d1dr9a1           8 VKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKY   87 (105)
T ss_dssp             TTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEEEEEC
T ss_pred             eCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEEEEeC
Confidence            5999999998754221    246676655332                    0123578999999999999999998754

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.69  E-value=3.5e-08  Score=49.05  Aligned_cols=56  Identities=16%  Similarity=0.465  Sum_probs=41.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC-----------------------CCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP-----------------------DHNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~-----------------------~~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|...+.....+.|||-  +..+.                       ......|.|.+++.+|+|.|.|.+..
T Consensus        14 ~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~YyCa~~~   93 (113)
T d2bnqd1          14 EGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRP   93 (113)
T ss_dssp             TTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcEEeEeEec
Confidence            489999999987655567889982  22110                       01235799999999999999998875


Q ss_pred             C
Q psy12725         56 E   56 (119)
Q Consensus        56 ~   56 (119)
                      .
T Consensus        94 ~   94 (113)
T d2bnqd1          94 T   94 (113)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=6e-08  Score=48.25  Aligned_cols=56  Identities=18%  Similarity=0.364  Sum_probs=39.6

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeCC--ccCCC---------------------------CCCCeEEEecCCCCCCeEEE
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKDG--KPVPD---------------------------HNEPVFRIDSVRKEDKGMYQ   50 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~~--~~~~~---------------------------~~~~~l~~~~~~~~d~g~y~   50 (119)
                      +|+.|+|.|.+.+. ....+.|||-.  ..+..                           .....|.|.+++.+|+|.|.
T Consensus        14 ~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~~~Dsg~Yy   93 (114)
T d1akjd_          14 LGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENEGYYF   93 (114)
T ss_dssp             TTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCCCCCCEEEe
Confidence            59999999998654 34568999822  11100                           01236899999999999999


Q ss_pred             EEEEcC
Q psy12725         51 CVIRNE   56 (119)
Q Consensus        51 C~~~~~   56 (119)
                      |.+...
T Consensus        94 Ca~~~~   99 (114)
T d1akjd_          94 CSALSN   99 (114)
T ss_dssp             EEEEET
T ss_pred             EeEcCC
Confidence            987753

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.68  E-value=5.9e-08  Score=47.72  Aligned_cols=55  Identities=18%  Similarity=0.332  Sum_probs=40.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCCC---------------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|++|+|.|.........+.|||.  ++.+..                     .....|.|.+++.+|+|.|.|.+..
T Consensus        15 ~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   92 (107)
T d1c5cl1          15 LGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYA   92 (107)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             CCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEEEecCc
Confidence            489999999987656667899972  322100                     1235799999999999999997654

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.67  E-value=1.1e-07  Score=46.77  Aligned_cols=55  Identities=20%  Similarity=0.343  Sum_probs=40.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC---------------------CCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP---------------------DHNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~---------------------~~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|++|+|.|...+.....+.|||-  +..+.                     ......|.|.+++.+|+|.|.|.+..
T Consensus        15 ~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1ospl1          15 LGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYFCQQYW   92 (107)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEEEEECS
T ss_pred             CCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEEEeecc
Confidence            499999999987655557999982  22110                     01236799999999999999997654

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.66  E-value=1.1e-07  Score=46.76  Aligned_cols=55  Identities=25%  Similarity=0.453  Sum_probs=40.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC-----------C----------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP-----------D----------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~-----------~----------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.........+.||+.  +....           .          .....|.|.+++.+|++.|.|....
T Consensus        15 ~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1d5il1          15 LGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYYCLQYD   92 (107)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEEeeecc
Confidence            489999999987655667889973  22110           0          1235799999999999999997654

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.66  E-value=3.9e-09  Score=50.53  Aligned_cols=38  Identities=26%  Similarity=0.575  Sum_probs=32.8

Q ss_pred             cCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         80 SFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .|.+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus         5 ~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~   42 (91)
T d1tnna_           5 KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLST   42 (91)
T ss_dssp             CCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCS
T ss_pred             CCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeeccccc
Confidence            44556788999999999999999999999999987764

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.5e-07  Score=46.39  Aligned_cols=56  Identities=20%  Similarity=0.474  Sum_probs=37.4

Q ss_pred             CCccEEEEEEeccCC---CCeeEEe--eCCccC----------CC-------------CCCCeEEEecCCCCCCeEEEEE
Q psy12725          1 MLALKFFTCKYEGNP---VKTISWM--KDGKPV----------PD-------------HNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~---~~~v~w~--~~~~~~----------~~-------------~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      +|++|+|.|.+....   ...+.|+  ++....          ..             ....+|.|.+++.+|+|.|.|.
T Consensus         8 ~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~Y~C~   87 (110)
T d1ncna_           8 FNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCI   87 (110)
T ss_dssp             TTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEEEEEE
T ss_pred             eCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEEEEEE
Confidence            599999999985432   2234443  322111          00             1346799999999999999999


Q ss_pred             EEcC
Q psy12725         53 IRNE   56 (119)
Q Consensus        53 ~~~~   56 (119)
                      +...
T Consensus        88 V~~~   91 (110)
T d1ncna_          88 IHHK   91 (110)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            8654

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.66  E-value=1.1e-08  Score=49.43  Aligned_cols=44  Identities=23%  Similarity=0.451  Sum_probs=33.1

Q ss_pred             CCeeeecCCccccC---CCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         74 PPVIKESFSDETLN---PGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      +|.+...+.+..+.   .++.+.|.|.+.|.|.|.+.|++||..+..
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~   50 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKM   50 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCC
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccC
Confidence            34555555444433   347899999999999999999999998864

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2.2e-07  Score=45.67  Aligned_cols=57  Identities=21%  Similarity=0.345  Sum_probs=39.2

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeC--CccC----------C-------------CCCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKD--GKPV----------P-------------DHNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~--~~~~----------~-------------~~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|......  ...+.|||.  +...          .             ......|.|.+++.+|+|.|.|.+
T Consensus        10 ~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y~C~v   89 (108)
T d1hkfa_          10 AGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRI   89 (108)
T ss_dssp             TTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEEEEEE
Confidence            489999999975432  335779872  1110          0             012246899999999999999998


Q ss_pred             EcCC
Q psy12725         54 RNEQ   57 (119)
Q Consensus        54 ~~~~   57 (119)
                      ....
T Consensus        90 ~~~~   93 (108)
T d1hkfa_          90 YRPS   93 (108)
T ss_dssp             ECTT
T ss_pred             ecCC
Confidence            7553

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.63  E-value=1.5e-07  Score=46.35  Aligned_cols=55  Identities=24%  Similarity=0.409  Sum_probs=40.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC----C-----------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP----D-----------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~----~-----------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.........+.||+.  ++...    .                 .....|.|.+++.+|+|.|.|.+..
T Consensus        15 ~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~YyCA~~~   92 (109)
T d1mqkl_          15 VGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYYCQHHY   92 (109)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEEEeeeC
Confidence            489999999987655567999982  22110    0                 1235799999999999999998764

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.63  E-value=4.2e-08  Score=46.26  Aligned_cols=44  Identities=16%  Similarity=0.319  Sum_probs=35.8

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCCC-eEEEEECCEEccc
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~  117 (119)
                      +|.+...+....+.+|+.++|.|.+.+.+.+ .++|++||..+..
T Consensus         4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~   48 (85)
T d2fcba1           4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPT   48 (85)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTT
T ss_pred             CCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccc
Confidence            3556666666778899999999999888766 6999999998864

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2.1e-08  Score=47.81  Aligned_cols=36  Identities=28%  Similarity=0.551  Sum_probs=31.6

Q ss_pred             CccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         82 SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+..+.+|+.+.|.|.+.+.|.|.+.|++++..+..
T Consensus         4 ~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~   39 (91)
T d1rhfa1           4 VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQN   39 (91)
T ss_dssp             EEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCS
T ss_pred             eeEEEcCCCeEEEEEEEEecCCceEEEEEeeccccc
Confidence            345678899999999999999999999999998864

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.63  E-value=4.3e-08  Score=48.86  Aligned_cols=56  Identities=16%  Similarity=0.289  Sum_probs=41.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCCC------------------------CCCCeEEEecCCCCCCeEEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVPD------------------------HNEPVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~~------------------------~~~~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      .|+.|+|.|.........+.|||-  ++.+..                        .....|.|.+++.+|.|.|.|.+.
T Consensus        14 ~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   93 (115)
T d1j8hd1          14 EGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAEYFCAVS   93 (115)
T ss_dssp             TTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCccceeeec
Confidence            489999999987655567999972  221100                        123469999999999999999987


Q ss_pred             cC
Q psy12725         55 NE   56 (119)
Q Consensus        55 ~~   56 (119)
                      ..
T Consensus        94 ~~   95 (115)
T d1j8hd1          94 ES   95 (115)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.63  E-value=8.3e-08  Score=47.12  Aligned_cols=55  Identities=22%  Similarity=0.369  Sum_probs=40.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCCC---------------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      +|+.|+|.|.........+.|||.  ++....                     .....|.|.+++.+|+|.|.|....
T Consensus        15 ~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (106)
T d1i8ka_          15 TGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYCLQSF   92 (106)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEeEecCc
Confidence            499999999886555567999973  222210                     1224699999999999999997654

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.62  E-value=5.4e-08  Score=46.99  Aligned_cols=37  Identities=19%  Similarity=0.333  Sum_probs=32.1

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      +.+..+..|+.+.|.|.+.+.|.+.+.|+++|..+..
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~   46 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNG   46 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCC
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccc
Confidence            3455678999999999999999999999999998864

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.62  E-value=1.4e-07  Score=46.32  Aligned_cols=55  Identities=24%  Similarity=0.398  Sum_probs=39.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCCC---------------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|++|+|.|.........+.|||.  ++....                     .....|.|.+++.+|++.|.|....
T Consensus        15 ~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~~~   92 (107)
T d1mexl1          15 LGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYFCQQYN   92 (107)
T ss_dssp             TTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             CCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEEEeECC
Confidence            489999999986555567999972  221100                     1235699999999999999997653

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.62  E-value=2.8e-08  Score=48.62  Aligned_cols=55  Identities=20%  Similarity=0.319  Sum_probs=39.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCCC---------------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.........+.|||-  +..+..                     .....|.|.+++.+|++.|.|....
T Consensus        12 ~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   89 (103)
T d8faba1          12 PGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQAWD   89 (103)
T ss_dssp             TTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEeeecC
Confidence            489999999987655567899972  222110                     1225789999999999999997654

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.61  E-value=1.5e-07  Score=46.23  Aligned_cols=55  Identities=22%  Similarity=0.401  Sum_probs=40.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC------------C---------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP------------D---------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~------------~---------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.........+.|||.  +..+.            .         .....|.|.+++.+|++.|.|....
T Consensus        15 ~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~YyCa~~~   92 (107)
T d1tjgl1          15 VGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYYCQQLH   92 (107)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             CCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEEEEECc
Confidence            489999999987655668999983  22110            0         1234699999999999999997554

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.61  E-value=3.1e-07  Score=45.17  Aligned_cols=55  Identities=24%  Similarity=0.413  Sum_probs=39.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC--------------C-------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP--------------D-------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~--------------~-------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|...+.....+.||+-  +..+.              .       .....|.|.+++.+|.+.|.|....
T Consensus        15 ~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~   92 (108)
T d1jhll_          15 PGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYICQQHN   92 (108)
T ss_dssp             TTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEEEECS
T ss_pred             CCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEEEeeCC
Confidence            489999999987655567999972  22110              0       1224799999999999999997554

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.60  E-value=4.7e-08  Score=48.10  Aligned_cols=54  Identities=13%  Similarity=0.290  Sum_probs=39.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC------------C---------CCCCeEEEecCCCCCCeEEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP------------D---------HNEPVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~------------~---------~~~~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      .|+.|+|.|.........+.||+-  ++.+.            .         .....|.|.+++.+|+|.|.|...
T Consensus        15 ~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d3cx5k1          15 LGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQHH   91 (107)
T ss_dssp             SSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEEEEEC
T ss_pred             CCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEEeeeC
Confidence            489999999986655567999972  22210            0         123579999999999999999754

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.59  E-value=1.7e-08  Score=48.44  Aligned_cols=44  Identities=27%  Similarity=0.446  Sum_probs=36.5

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCCC-eEEEEECCEEccc
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~  117 (119)
                      .|.+...+.+..+.+|+.+.|.|.+.+.|.| .+.|++||..+..
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~   46 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNW   46 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCT
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeee
Confidence            4666666767778899999999999999866 6999999988754

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.3e-07  Score=46.27  Aligned_cols=34  Identities=15%  Similarity=0.344  Sum_probs=30.2

Q ss_pred             cccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         84 ETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ..+..|+.+.|.|.+.+.|.|.+.|+++|..+..
T Consensus        12 i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~   45 (107)
T d1iray3          12 MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDE   45 (107)
T ss_dssp             EECCTTCCEEEEEEEEECTTCEEEEEETTEECCT
T ss_pred             EEEeCCCEEEEEEEeccCCCCeEEEEECCccccc
Confidence            3467899999999999999999999999988764

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.57  E-value=6e-07  Score=44.30  Aligned_cols=55  Identities=15%  Similarity=0.332  Sum_probs=40.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC-----------------------CCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP-----------------------DHNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~-----------------------~~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|...+.....+.||+.  ++.+.                       ......|.|..++.+|+|.|.|.+..
T Consensus        14 ~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          14 EGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYFCAAME   93 (111)
T ss_dssp             TTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEES
T ss_pred             CCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEEEeeccC
Confidence            489999999987655567889972  22220                       01235789999999999999998764

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.57  E-value=9.3e-08  Score=44.93  Aligned_cols=45  Identities=11%  Similarity=0.175  Sum_probs=36.6

Q ss_pred             CCCeeeecCCccccCCCCcEEEEeEEccCCCC-eEEEEECCEEccc
Q psy12725         73 DPPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVN  117 (119)
Q Consensus        73 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~  117 (119)
                      .+|.+...|....+.+|+.++|.|.+.+.+.+ .++|++++..+..
T Consensus         4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~   49 (84)
T d1fnla1           4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS   49 (84)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES
T ss_pred             CCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee
Confidence            45667777767778999999999999888877 5788899987764

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.57  E-value=1.3e-07  Score=47.01  Aligned_cols=56  Identities=20%  Similarity=0.286  Sum_probs=41.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEee--CCccCC------------------------CCCCCeEEEecCCCCCCeEEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMK--DGKPVP------------------------DHNEPVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~--~~~~~~------------------------~~~~~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      .|+.|+|.|.........+.|||  .+....                        ......|.|.+++.+|+|.|.|.+.
T Consensus        14 ~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~   93 (115)
T d1i9ea_          14 EGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVS   93 (115)
T ss_dssp             TTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccceeccccc
Confidence            48999999998765566788997  222110                        0123579999999999999999876


Q ss_pred             cC
Q psy12725         55 NE   56 (119)
Q Consensus        55 ~~   56 (119)
                      ..
T Consensus        94 ~~   95 (115)
T d1i9ea_          94 GF   95 (115)
T ss_dssp             ET
T ss_pred             CC
Confidence            43

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.56  E-value=4.2e-07  Score=45.19  Aligned_cols=55  Identities=15%  Similarity=0.348  Sum_probs=39.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC-----------------------CCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP-----------------------DHNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~-----------------------~~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|...+ ....+.|||-  +..+.                       ......|.|.+++.+|+|.|.|....
T Consensus        14 ~G~svtl~C~~s~-~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (115)
T d1ogad1          14 EGENLTVYCNSSS-VFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAG   92 (115)
T ss_dssp             TTCCEEEEEECSS-CCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCCCEEEEEEECC-CCceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeEcccccC
Confidence            3899999999765 4457899982  22110                       01235799999999999999998765


Q ss_pred             C
Q psy12725         56 E   56 (119)
Q Consensus        56 ~   56 (119)
                      .
T Consensus        93 ~   93 (115)
T d1ogad1          93 S   93 (115)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=1.6e-07  Score=46.06  Aligned_cols=55  Identities=18%  Similarity=0.321  Sum_probs=39.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCCC---------------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|...+.....+.|||.  +.....                     .....|.|.+++.+|++.|.|....
T Consensus        14 ~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1lk3l1          14 PGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQQSW   91 (106)
T ss_dssp             TTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCccccccc
Confidence            489999999997655567999973  211100                     1235799999999999999996543

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.56  E-value=2.2e-07  Score=45.42  Aligned_cols=54  Identities=19%  Similarity=0.275  Sum_probs=38.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCC--ccCCC---------------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDG--KPVPD---------------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~--~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.... ....+.||+-.  .....                     .....|.|.+++.+|++.|.|....
T Consensus        14 ~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   90 (104)
T d1yqvl1          14 PGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYYCQQWG   90 (104)
T ss_dssp             TTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeEEEEecC
Confidence            4899999998754 44468899732  11100                     1235799999999999999997543

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=98.56  E-value=2.9e-08  Score=47.96  Aligned_cols=33  Identities=30%  Similarity=0.743  Sum_probs=30.0

Q ss_pred             ccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         85 TLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+..|+.+.|.|.+.|.|.|.+.|++||..+..
T Consensus        16 ~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~   48 (97)
T d3dara1          16 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQ   48 (97)
T ss_dssp             EECTTCCEEEECCEEEESCCEEEEEETTEECCG
T ss_pred             EECCCCcEEEEEEEeEECCCEEEEEECCEeccc
Confidence            467899999999999999999999999998864

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.56  E-value=1.9e-07  Score=45.78  Aligned_cols=55  Identities=18%  Similarity=0.288  Sum_probs=40.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCCC---------------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|...+.....+.||+.  ++.+..                     .....|.|.+++.+|++.|.|....
T Consensus        14 ~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          14 VGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHCQHYA   91 (106)
T ss_dssp             TTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEEEEEEEC
T ss_pred             CCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcEeeeeCC
Confidence            489999999987655567899973  221100                     1224699999999999999998654

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.55  E-value=3.5e-07  Score=45.12  Aligned_cols=56  Identities=16%  Similarity=0.376  Sum_probs=40.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC-----------------------CCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP-----------------------DHNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~-----------------------~~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.........+.|||-  ++.+.                       ......|.|.++..+|++.|.|....
T Consensus        14 ~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~   93 (110)
T d1ac6a_          14 EEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYYCALSG   93 (110)
T ss_dssp             TTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEEEEEEEE
T ss_pred             CCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcccceeecC
Confidence            489999999876555557999972  22110                       01235789999999999999998765


Q ss_pred             C
Q psy12725         56 E   56 (119)
Q Consensus        56 ~   56 (119)
                      .
T Consensus        94 ~   94 (110)
T d1ac6a_          94 G   94 (110)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.55  E-value=6.9e-08  Score=48.37  Aligned_cols=55  Identities=22%  Similarity=0.342  Sum_probs=39.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCCC---------------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      +|+.|+|.|...+.....+.|||.  +.....                     .....|.|.+++.+|++.|.|....
T Consensus        15 ~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa~~~   92 (119)
T d1f3rb2          15 VGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYN   92 (119)
T ss_dssp             TTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEES
T ss_pred             CCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEEeeccC
Confidence            499999999986654557899973  211100                     0124699999999999999997654

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.3e-07  Score=46.55  Aligned_cols=57  Identities=12%  Similarity=0.140  Sum_probs=37.5

Q ss_pred             CCccEEEEEEecc-CCCC--eeEEeeCCccCCCC-------C-C-----CeEEEecCCCCC-CeEEEEEEEcCCC
Q psy12725          1 MLALKFFTCKYEG-NPVK--TISWMKDGKPVPDH-------N-E-----PVFRIDSVRKED-KGMYQCVIRNEQE   58 (119)
Q Consensus         1 ~g~~~~l~c~~~~-~~~~--~v~w~~~~~~~~~~-------~-~-----~~l~~~~~~~~d-~g~y~C~~~~~~~   58 (119)
                      .|+.++|.|.+.+ .|..  .+.|++++..+...       . .     +.+.+. .+.+| ...|+|++.+...
T Consensus        15 ~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~-~~~~D~g~~ltC~a~~~~~   88 (109)
T d1vcaa1          15 AGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFT-PVIEDIGKVLVCRAKLHID   88 (109)
T ss_dssp             TTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEEC-CCGGGTTCEEEEEEEECSC
T ss_pred             CCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEcc-CChHHCCcEEEEEEEcCcC
Confidence            4899999999975 4533  68999988665311       1 1     234443 44444 5589999998753

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=4.2e-07  Score=45.10  Aligned_cols=56  Identities=20%  Similarity=0.304  Sum_probs=39.5

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeC--CccCC-------------C-----------CCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKD--GKPVP-------------D-----------HNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~--~~~~~-------------~-----------~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|...+. ....+.|||-  +....             .           .....|.|.+++.+|+|.|.|.+
T Consensus        13 ~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~   92 (114)
T d3bp5a1          13 EGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGA   92 (114)
T ss_dssp             TTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCCeEEEEEE
Confidence            48999999998654 3456889972  22110             0           01245899999999999999988


Q ss_pred             EcC
Q psy12725         54 RNE   56 (119)
Q Consensus        54 ~~~   56 (119)
                      ...
T Consensus        93 ~~~   95 (114)
T d3bp5a1          93 ISL   95 (114)
T ss_dssp             ECS
T ss_pred             EeC
Confidence            754

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.53  E-value=1.6e-07  Score=46.60  Aligned_cols=55  Identities=22%  Similarity=0.384  Sum_probs=39.3

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeC--CccC----CC-----------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKD--GKPV----PD-----------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~--~~~~----~~-----------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|...+.  ....+.|||.  +...    ..           .....|.|.+++.+|+|.|.|.+..
T Consensus        14 ~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   87 (113)
T d1vesa_          14 TGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFY   87 (113)
T ss_dssp             TTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeeeec
Confidence            48999999998643  3456899972  2211    00           1224799999999999999998864

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.52  E-value=4.5e-07  Score=44.64  Aligned_cols=55  Identities=24%  Similarity=0.402  Sum_probs=39.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCCC---------------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|...+.....+.||+.  ++....                     .....|.|.+++.+|++.|.|....
T Consensus        17 ~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          17 VGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQYQ   94 (109)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEEEeecC
Confidence            489999999987655567899972  211100                     1224689999999999999998654

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.52  E-value=1.1e-07  Score=46.97  Aligned_cols=55  Identities=16%  Similarity=0.379  Sum_probs=40.0

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCCC-----------------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVPD-----------------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~~-----------------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.........+.|||-  +.....                       .....|.|.+++.+|+|.|.|.+..
T Consensus        13 ~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (110)
T d1u3ha1          13 EGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAASA   92 (110)
T ss_dssp             TTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEEEECCEE
T ss_pred             CCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeEeeeecC
Confidence            489999999987655557899973  221100                       0124699999999999999998764

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=3.3e-07  Score=44.01  Aligned_cols=59  Identities=14%  Similarity=0.386  Sum_probs=38.9

Q ss_pred             CccEEEEEEecc-CCCCeeEEeeCCccCCCC--------CCCeE---EEecCCCCCCeEEEEEEEcCCCCc
Q psy12725          2 LALKFFTCKYEG-NPVKTISWMKDGKPVPDH--------NEPVF---RIDSVRKEDKGMYQCVIRNEQESA   60 (119)
Q Consensus         2 g~~~~l~c~~~~-~~~~~v~w~~~~~~~~~~--------~~~~l---~~~~~~~~d~g~y~C~~~~~~~~~   60 (119)
                      |+.++|.|.+.| +|.+.|.|++++..+...        .....   ....+...+...|.|.+.+.....
T Consensus        16 ~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~~~~~~~~tC~V~h~~l~~   86 (95)
T d1dr9a2          16 SNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRV   86 (95)
T ss_dssp             TTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCE
T ss_pred             CCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEccCCccceEEEEEEecCCCC
Confidence            567899999987 588899999998766431        11111   111223455678999999875433

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.51  E-value=3.7e-07  Score=45.60  Aligned_cols=56  Identities=16%  Similarity=0.334  Sum_probs=40.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC--------------C-------------CCCCeEEEecCCCCCCeEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP--------------D-------------HNEPVFRIDSVRKEDKGMYQC   51 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~--------------~-------------~~~~~l~~~~~~~~d~g~y~C   51 (119)
                      .|+.|+|.|...+.....+.|||-  ++.+.              .             .....|.|..++.+|+|.|.|
T Consensus        15 ~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyC   94 (118)
T d2ij0c1          15 SGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPEDSGFYVC   94 (118)
T ss_dssp             TTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGGGCEEEEE
T ss_pred             CCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccccCceEEE
Confidence            389999999987666678999982  22110              0             011358999999999999999


Q ss_pred             EEEcC
Q psy12725         52 VIRNE   56 (119)
Q Consensus        52 ~~~~~   56 (119)
                      .....
T Consensus        95 a~~~~   99 (118)
T d2ij0c1          95 SALAG   99 (118)
T ss_dssp             EEECS
T ss_pred             EEecC
Confidence            87643

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.2e-07  Score=44.17  Aligned_cols=54  Identities=19%  Similarity=0.288  Sum_probs=41.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCC--------CCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVP--------DHNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~--------~~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|+.. .+...+.+||++....        ......+.|..++..|.|.|.|....
T Consensus        17 ~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1          17 QGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             TTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            389999999975 3455788889875421        12457899999999999999998754

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.50  E-value=6.2e-07  Score=43.43  Aligned_cols=57  Identities=19%  Similarity=0.416  Sum_probs=39.1

Q ss_pred             CCccEEEEEEeccC-C-CCeeEEeeCCccCCCC---------CCC---eEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGN-P-VKTISWMKDGKPVPDH---------NEP---VFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~---------~~~---~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      +|+.++|.|.+.+. | ...|+|++||+.+...         .+.   ......+...+...|+|++.+..
T Consensus        16 ~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s   86 (100)
T d1muja1          16 LGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHWG   86 (100)
T ss_dssp             TTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred             cCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEECC
Confidence            36788999999986 4 5689999999776421         111   12222344556678999999875

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.49  E-value=3.9e-07  Score=45.27  Aligned_cols=55  Identities=20%  Similarity=0.447  Sum_probs=39.5

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeC-----CccC------------------CC----------CCCCeEEEecCCCCCC
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKD-----GKPV------------------PD----------HNEPVFRIDSVRKEDK   46 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~-----~~~~------------------~~----------~~~~~l~~~~~~~~d~   46 (119)
                      .|+.|+|.|.+.+. ....+.||+-     .+.+                  ..          .....|.|.+++.+|+
T Consensus        12 ~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds   91 (115)
T d2atpb1          12 TNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNVKPEDS   91 (115)
T ss_dssp             TTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECSCCGGGC
T ss_pred             CCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeecccCCCCC
Confidence            48999999998764 3456899972     1111                  00          1235799999999999


Q ss_pred             eEEEEEEEc
Q psy12725         47 GMYQCVIRN   55 (119)
Q Consensus        47 g~y~C~~~~   55 (119)
                      |.|.|....
T Consensus        92 g~Y~Ca~~~  100 (115)
T d2atpb1          92 DFYFCATVG  100 (115)
T ss_dssp             EEEEEEEEC
T ss_pred             cEEEEeEcC
Confidence            999998764

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.49  E-value=3.9e-07  Score=44.85  Aligned_cols=56  Identities=18%  Similarity=0.305  Sum_probs=40.2

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCCC---------------------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|++|+|.|.........+.|||.  ++.+..                     .....|.|.+++.+|++.|.|.....
T Consensus        14 ~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA~~~~   92 (109)
T d1w72l1          14 PGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQVWDS   92 (109)
T ss_dssp             TTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEEecCC
Confidence            489999999976544557899973  222100                     12246889999999999999987654

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=1.2e-07  Score=46.61  Aligned_cols=34  Identities=26%  Similarity=0.667  Sum_probs=28.9

Q ss_pred             cccCCCCcEEEEeEEc-cCCCCeEEEEECCEEccc
Q psy12725         84 ETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        84 ~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~~~  117 (119)
                      ..+..|+.+.|.|.+. +.|.+.+.|++++..+..
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~   46 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLT   46 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecC
Confidence            3577899999999974 789999999999987754

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=4e-08  Score=47.94  Aligned_cols=43  Identities=21%  Similarity=0.441  Sum_probs=32.4

Q ss_pred             CeeeecCCccccCCCCcEEEEeEE-ccCCCCeEEEEECCEEccc
Q psy12725         75 PVIKESFSDETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        75 ~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~  117 (119)
                      |.+........+..|+.+.|.|.+ .+.|.+.+.|++++..+..
T Consensus         3 P~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~   46 (104)
T d1nbqa2           3 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPT   46 (104)
T ss_dssp             CCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCS
T ss_pred             CcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccC
Confidence            333333334457789999999987 5789999999999987754

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.5e-07  Score=44.29  Aligned_cols=53  Identities=17%  Similarity=0.379  Sum_probs=40.9

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCC-----CCCCCeEEEecCCCCCCeEEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVP-----DHNEPVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~-----~~~~~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      .|+.|+|.|.... ....+.|+|++....     ......+.|..++..|.|.|.|...
T Consensus        17 ~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2          17 SGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             TTCEEEEEEECSS-SCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCCcEEEEECCCC-CCCEEEEEECCCccceeecCCCceeEEEecccChhcCceEEEEeE
Confidence            3899999999864 556788999875432     1244678999999999999999644

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=8.2e-08  Score=44.90  Aligned_cols=43  Identities=14%  Similarity=0.234  Sum_probs=32.6

Q ss_pred             CeeeecCCccccCCCCcEEEEeEEccCCCC-eEEEEECCEEccc
Q psy12725         75 PVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDGKKLVN  117 (119)
Q Consensus        75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~~~~~~  117 (119)
                      |.+...|....+.+|+.+.|.|.+.+.|.+ .++|++++..+..
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~   45 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE   45 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeec
Confidence            556666666678899999999999888877 5788899988764

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.46  E-value=7.5e-08  Score=45.90  Aligned_cols=41  Identities=32%  Similarity=0.516  Sum_probs=32.0

Q ss_pred             CCeeeec-CCccccCCCCcEEEEeEEccCCCCeEEEEECCEE
Q psy12725         74 PPVIKES-FSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK  114 (119)
Q Consensus        74 ~~~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~  114 (119)
                      +|.+... +....+.+|+.+.|.|.+.|.|.|.+.|++++..
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~   45 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGS   45 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSC
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccc
Confidence            3444443 4555678999999999999999999999996643

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.46  E-value=4.3e-07  Score=44.78  Aligned_cols=56  Identities=11%  Similarity=0.269  Sum_probs=39.5

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeC--CccCC---------------------CCCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKD--GKPVP---------------------DHNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~--~~~~~---------------------~~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|...+. ....+.|||.  ++.+.                     ......|.|.+++.+|+|.|.|.+...
T Consensus        12 ~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   91 (110)
T d2esvd1          12 EGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYYCIVVRS   91 (110)
T ss_dssp             TTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEEEEEEES
T ss_pred             CCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEEEEEeCC
Confidence            48999999997643 3446889972  22210                     012356999999999999999987643

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.45  E-value=7e-07  Score=43.17  Aligned_cols=55  Identities=9%  Similarity=0.088  Sum_probs=40.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCCC--------CCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPDH--------NEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--------~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|...- +...+.|+|++......        ....+.|..+...|.|.|.|.....
T Consensus        19 ~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2          19 AGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             TTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CCCeEEEEECCCC-CccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            3899999998764 55678899988654321        1234577778888999999987654

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2.2e-07  Score=44.99  Aligned_cols=39  Identities=28%  Similarity=0.544  Sum_probs=33.3

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCCC-eEEEEECC
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPTP-EISWYLDG  112 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~~  112 (119)
                      ||.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~   41 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKIT   41 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECC
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEecc
Confidence            6777777777778899999999999999877 79999865

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.44  E-value=3.2e-07  Score=43.43  Aligned_cols=35  Identities=14%  Similarity=0.382  Sum_probs=28.2

Q ss_pred             ccccCCCCcEEEEeEEccC-CCCeEEEEECCEEccc
Q psy12725         83 DETLNPGPNYYFKCIASGN-PTPEISWYLDGKKLVN  117 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~~~~~~~  117 (119)
                      ...+.+|+.+.|.|.+.+. |.+.+.|+|+|..+..
T Consensus         9 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~   44 (88)
T d2fcba2           9 HLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF   44 (88)
T ss_dssp             CSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEE
T ss_pred             CCeEecCCeEEEEEEecCCCCCcEEEEEeecccccc
Confidence            4457899999999998655 5568999999988753

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.44  E-value=3.7e-07  Score=45.00  Aligned_cols=54  Identities=11%  Similarity=0.289  Sum_probs=38.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC---------------C----------CCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP---------------D----------HNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~---------------~----------~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|...+ ....+.|||-  +..+.               .          .....|.|.+++.+|+|.|.|..
T Consensus        15 ~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   93 (110)
T d2aq2a1          15 TGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQTSVYFCAS   93 (110)
T ss_dssp             TTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhCEEEEEee
Confidence            4899999998764 4567999982  22110               0          12246889999999999999987


Q ss_pred             Ec
Q psy12725         54 RN   55 (119)
Q Consensus        54 ~~   55 (119)
                      ..
T Consensus        94 ~~   95 (110)
T d2aq2a1          94 GG   95 (110)
T ss_dssp             EE
T ss_pred             CC
Confidence            64

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.44  E-value=5.9e-07  Score=44.51  Aligned_cols=56  Identities=18%  Similarity=0.271  Sum_probs=39.1

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeC--CccCCC------------------------CCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKD--GKPVPD------------------------HNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~--~~~~~~------------------------~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|..... ....+.|||.  +..+..                        .....|.|.+++.+|+|.|.|.+
T Consensus        14 ~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~   93 (114)
T d2ak4d1          14 EKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCAL   93 (114)
T ss_dssp             TTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccCCCceEeC
Confidence            48999999987543 3445789982  221100                        11246899999999999999987


Q ss_pred             EcC
Q psy12725         54 RNE   56 (119)
Q Consensus        54 ~~~   56 (119)
                      ...
T Consensus        94 ~~~   96 (114)
T d2ak4d1          94 SGF   96 (114)
T ss_dssp             ECS
T ss_pred             CCC
Confidence            654

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.43  E-value=5.9e-07  Score=44.10  Aligned_cols=55  Identities=15%  Similarity=0.297  Sum_probs=38.6

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeC--CccCCC---------------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKD--GKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~--~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|..... ....+.|||.  +..+..                     .....|.|.+++.+|+|.|.|....
T Consensus        15 ~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   93 (108)
T d2fx7l1          15 PGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYG   93 (108)
T ss_dssp             TTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             CCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEEEeeecCC
Confidence            48999999997543 3446889973  221100                     1224699999999999999997653

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.43  E-value=2.8e-07  Score=43.71  Aligned_cols=34  Identities=12%  Similarity=0.215  Sum_probs=27.4

Q ss_pred             ccccCCCCcEEEEeEEccC-CCCeEEEEECCEEcc
Q psy12725         83 DETLNPGPNYYFKCIASGN-PTPEISWYLDGKKLV  116 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~~~~~~  116 (119)
                      ...+.+|+.+.|.|.+.+. |.+.+.|+|||..+.
T Consensus        11 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~   45 (89)
T d1fnla2          11 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK   45 (89)
T ss_dssp             CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEE
T ss_pred             CCeEccCCeEEEEEEecCCCCCcEEEEEEcccccc
Confidence            3457799999999998654 555899999998765

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.1e-08  Score=48.29  Aligned_cols=36  Identities=28%  Similarity=0.321  Sum_probs=30.9

Q ss_pred             CccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         82 SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++++..+..
T Consensus        12 ~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~   47 (84)
T d2oz4a3          12 GNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP   47 (84)
T ss_dssp             SEEEEETTCEECCCCCCEEESCCEEEEEETTTEECC
T ss_pred             ccEEEeCCCEEEEEEEEeEcCccEEEEEEeecccee
Confidence            445678999999999999999999999999876653

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=4.9e-08  Score=46.81  Aligned_cols=45  Identities=16%  Similarity=0.191  Sum_probs=35.6

Q ss_pred             CCCeeeecCCccccCCCCcEEEEeEEccCCC-CeEEEEECCEEccc
Q psy12725         73 DPPVIKESFSDETLNPGPNYYFKCIASGNPT-PEISWYLDGKKLVN  117 (119)
Q Consensus        73 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~~~~~~~  117 (119)
                      .+|.+...+....+.+|+.+.|.|.+.+.++ +.+.|+|++..+..
T Consensus         5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~   50 (93)
T d1n26a1           5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGS   50 (93)
T ss_dssp             CCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSC
T ss_pred             CCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccc
Confidence            4567777666667888999999999888765 48999999876643

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.42  E-value=8.5e-07  Score=43.81  Aligned_cols=54  Identities=15%  Similarity=0.294  Sum_probs=38.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC--------------------------CCCCCeEEEecCCCCCCeEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP--------------------------DHNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~--------------------------~~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      .|+.|+|.|...+ ....+.|||-  ++.+.                          ......|.|.+++.+|+|.|.|.
T Consensus        13 ~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa   91 (112)
T d1kgce1          13 RGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQEDSAVYLCA   91 (112)
T ss_dssp             TTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCCCEEEEEe
Confidence            4899999998643 4567999972  22110                          01234689999999999999998


Q ss_pred             EEc
Q psy12725         53 IRN   55 (119)
Q Consensus        53 ~~~   55 (119)
                      ...
T Consensus        92 ~~~   94 (112)
T d1kgce1          92 SSL   94 (112)
T ss_dssp             EES
T ss_pred             eeC
Confidence            764

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.42  E-value=4.4e-07  Score=44.88  Aligned_cols=56  Identities=18%  Similarity=0.381  Sum_probs=39.8

Q ss_pred             CCccEEEEEEeccC--CCCeeEEeeC--CccC----CC-----------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGN--PVKTISWMKD--GKPV----PD-----------HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~--~~~~v~w~~~--~~~~----~~-----------~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|...+.  ....+.|||.  ++..    ..           .....|.|.+++.+|+|.|.|.+...
T Consensus        13 ~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~   87 (112)
T d1sq2n_          13 TGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVA   87 (112)
T ss_dssp             TTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECBT
T ss_pred             CCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEecC
Confidence            38999999988543  3467899972  2211    00           12247999999999999999987654

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=4.5e-07  Score=45.34  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=21.1

Q ss_pred             CCeEEEecCCCCCCeEEEEEEEcC
Q psy12725         33 EPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus        33 ~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      ..+|.|.+++.+|+|.|.|.+...
T Consensus        82 ~~sL~I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          82 NCTLSIRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEEEECCCChHHCEEEEEEEEeC
Confidence            357999999999999999999754

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.4e-07  Score=44.23  Aligned_cols=33  Identities=15%  Similarity=0.145  Sum_probs=28.2

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEECCEEc
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYLDGKKL  115 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~  115 (119)
                      +..+.+|+.++|.|.+.|.|.|.+.|++++..+
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~   40 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN   40 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeecccc
Confidence            345788999999999999999999999876543

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.41  E-value=6.6e-07  Score=44.32  Aligned_cols=55  Identities=20%  Similarity=0.334  Sum_probs=37.8

Q ss_pred             CCccEEEEEEeccC------CCCeeEEeeC--CccCCC---------------------CCCCeEEEecCCCCCCeEEEE
Q psy12725          1 MLALKFFTCKYEGN------PVKTISWMKD--GKPVPD---------------------HNEPVFRIDSVRKEDKGMYQC   51 (119)
Q Consensus         1 ~g~~~~l~c~~~~~------~~~~v~w~~~--~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C   51 (119)
                      +|+.|+|.|...+.      ....+.|||.  ++.+..                     .....|.|..++.+|+|.|.|
T Consensus        15 ~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~Dsa~YyC   94 (113)
T d1q9ra1          15 AGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAEDLAVYYC   94 (113)
T ss_dssp             TTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccCCCeEEEe
Confidence            48999999986532      1235899983  222100                     122469999999999999999


Q ss_pred             EEEc
Q psy12725         52 VIRN   55 (119)
Q Consensus        52 ~~~~   55 (119)
                      ....
T Consensus        95 A~~~   98 (113)
T d1q9ra1          95 KQSY   98 (113)
T ss_dssp             EECS
T ss_pred             cccC
Confidence            7643

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.41  E-value=2.6e-06  Score=41.96  Aligned_cols=55  Identities=16%  Similarity=0.382  Sum_probs=38.7

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC--------------------------CCCCCeEEEecCCCCCCeEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP--------------------------DHNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~--------------------------~~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      .|+.|+|.|...+ ....+.|||-  +..+.                          ......|.|.+++.+|+|.|.|.
T Consensus        13 ~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyCa   91 (111)
T d2esve1          13 KGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDSGVYFCA   91 (111)
T ss_dssp             TTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCCCceEEEe
Confidence            4899999998543 4457899972  21110                          01124799999999999999998


Q ss_pred             EEcC
Q psy12725         53 IRNE   56 (119)
Q Consensus        53 ~~~~   56 (119)
                      ....
T Consensus        92 ~~~~   95 (111)
T d2esve1          92 SSQD   95 (111)
T ss_dssp             EESS
T ss_pred             eeCC
Confidence            6643

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.41  E-value=2.5e-07  Score=45.36  Aligned_cols=41  Identities=20%  Similarity=0.444  Sum_probs=32.2

Q ss_pred             CCeeeec-CCccccCCCCcEEEEeEEccCCCCeEEEEECCEE
Q psy12725         74 PPVIKES-FSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK  114 (119)
Q Consensus        74 ~~~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~  114 (119)
                      +|.+... |....+..|+.+.|.|.+.+.|.|.+.|++++..
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~   45 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK   45 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC--
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCcc
Confidence            4555543 4567789999999999999999999999987543

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.1e-06  Score=42.58  Aligned_cols=56  Identities=16%  Similarity=0.342  Sum_probs=38.9

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC--------CCCe---EEEecCCCCCCeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH--------NEPV---FRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~--------~~~~---l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      |+.++|.|.+.|. | ...++|.+|+..+...        ...+   .....+...+.+.|+|++.+..
T Consensus        19 ~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s   87 (100)
T d1k5nb_          19 GKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVT   87 (100)
T ss_dssp             TSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECTT
T ss_pred             CCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeCC
Confidence            6788999999986 4 5589999999876431        1111   2223345566778999999874

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.41  E-value=1.9e-07  Score=46.52  Aligned_cols=56  Identities=20%  Similarity=0.356  Sum_probs=39.5

Q ss_pred             CCccEEEEEEeccC-CCCeeEEee--CCccCC------C--------------------CCCCeEEEecCCCCCCeEEEE
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMK--DGKPVP------D--------------------HNEPVFRIDSVRKEDKGMYQC   51 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~--~~~~~~------~--------------------~~~~~l~~~~~~~~d~g~y~C   51 (119)
                      .|+.|+|.|...+. ....+.|||  .++.+.      .                    .....|.|.+++.+|+|.|.|
T Consensus        14 ~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyC   93 (116)
T d1tvda_          14 SGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDSATYYC   93 (116)
T ss_dssp             TTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEE
T ss_pred             CCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCcccccccccee
Confidence            48999999987543 456789997  222110      0                    011368999999999999999


Q ss_pred             EEEcC
Q psy12725         52 VIRNE   56 (119)
Q Consensus        52 ~~~~~   56 (119)
                      .+...
T Consensus        94 a~~~~   98 (116)
T d1tvda_          94 AFTLP   98 (116)
T ss_dssp             EEECT
T ss_pred             eEecC
Confidence            87754

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.41  E-value=9.9e-07  Score=43.64  Aligned_cols=56  Identities=14%  Similarity=0.395  Sum_probs=40.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC----------------------CCCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP----------------------DHNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~----------------------~~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|...+ ....+.|||-  +..+.                      ......|.|.+++.+|+|.|.|.+...
T Consensus        15 ~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   93 (113)
T d1h5ba_          15 EGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAEAS   93 (113)
T ss_dssp             TTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEEEEEecCC
Confidence            4899999999865 4457899982  21110                      012246899999999999999988754


Q ss_pred             C
Q psy12725         57 Q   57 (119)
Q Consensus        57 ~   57 (119)
                      .
T Consensus        94 ~   94 (113)
T d1h5ba_          94 S   94 (113)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.7e-06  Score=41.65  Aligned_cols=56  Identities=13%  Similarity=0.242  Sum_probs=39.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC-----------CCCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD-----------HNEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~-----------~~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+.|+|.|.... ....+.++|++.....           .....+.|..++..|.|.|.|......
T Consensus        17 ~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~   83 (98)
T d1ugna2          17 SGGNVTLQCDSQV-AFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSN   83 (98)
T ss_dssp             TTCCEEEEEECSS-CCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTT
T ss_pred             CCCcEEEEeCCCC-CCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEcCC
Confidence            3899999999763 4557788887764321           123468999999999999999887654

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.39  E-value=1.6e-06  Score=42.92  Aligned_cols=55  Identities=13%  Similarity=0.309  Sum_probs=39.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC-------------------------CCCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP-------------------------DHNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~-------------------------~~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|... .....+.|||-  ++.+.                         ......|.|..+..+|++.|.|..
T Consensus        13 ~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa~YyCa~   91 (114)
T d1ogae1          13 EGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYLCAS   91 (114)
T ss_dssp             TTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEEEEEEE
T ss_pred             CCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCceeEEEee
Confidence            489999999975 35567999972  21110                         012357999999999999999987


Q ss_pred             EcC
Q psy12725         54 RNE   56 (119)
Q Consensus        54 ~~~   56 (119)
                      ...
T Consensus        92 ~~~   94 (114)
T d1ogae1          92 SSR   94 (114)
T ss_dssp             ESS
T ss_pred             ccC
Confidence            654

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=1e-06  Score=43.50  Aligned_cols=25  Identities=16%  Similarity=0.270  Sum_probs=21.3

Q ss_pred             CCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725         33 EPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus        33 ~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      ..+|.|.+++.+|+|.|.|.+....
T Consensus        78 ~~sL~I~~v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          78 VCNLLLKDLKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEECC-
T ss_pred             EEEEEECCCChhHCEEEEEEEEeCC
Confidence            3579999999999999999997653

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.38  E-value=8.3e-07  Score=43.79  Aligned_cols=56  Identities=14%  Similarity=0.271  Sum_probs=39.7

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeC--CccCC---------C------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKD--GKPVP---------D------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~--~~~~~---------~------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|++|+|.|...+..  ...+.||+-  +..+.         .            .....|.|.+++.+|+|.|.|....
T Consensus        14 ~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~~   93 (111)
T d1rzfl1          14 PGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGTWD   93 (111)
T ss_dssp             TTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEEEE
T ss_pred             CCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcceEEeecC
Confidence            489999999876532  446999973  21110         0            1235799999999999999998765


Q ss_pred             C
Q psy12725         56 E   56 (119)
Q Consensus        56 ~   56 (119)
                      .
T Consensus        94 ~   94 (111)
T d1rzfl1          94 S   94 (111)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2.2e-07  Score=44.49  Aligned_cols=42  Identities=10%  Similarity=0.313  Sum_probs=31.7

Q ss_pred             CeeeecCC-ccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         75 PVIKESFS-DETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        75 ~~~~~~~~-~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      |.+..... ...+.+|+.+.|.|.+. .|.+.+.|++||..+..
T Consensus         6 ~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~   48 (94)
T d1pd6a_           6 TAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQM   48 (94)
T ss_dssp             SSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECC
T ss_pred             CcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCcccee
Confidence            44443333 34678999999999985 48889999999998864

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.37  E-value=4.8e-07  Score=44.59  Aligned_cols=55  Identities=16%  Similarity=0.358  Sum_probs=38.5

Q ss_pred             CCccEEEEEEeccCC---CCeeEEee--CCccCCC---------------------CCCCeEEEecCCCCCCeEEEEEEE
Q psy12725          1 MLALKFFTCKYEGNP---VKTISWMK--DGKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~---~~~v~w~~--~~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      .|++|+|.|...+..   ...+.|||  .++.+..                     .....|.|.+++.+|.|.|.|...
T Consensus        14 ~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~YyCa~~   93 (110)
T d1oaql_          14 PGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIYFCALW   93 (110)
T ss_dssp             TTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeEEEEcc
Confidence            389999999986432   22388997  2222210                     123578999999999999999876


Q ss_pred             c
Q psy12725         55 N   55 (119)
Q Consensus        55 ~   55 (119)
                      .
T Consensus        94 ~   94 (110)
T d1oaql_          94 Y   94 (110)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.36  E-value=3.2e-06  Score=40.68  Aligned_cols=57  Identities=23%  Similarity=0.349  Sum_probs=38.4

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC---------CCCe---EEEecCCCCCCeEEEEEEEcCCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH---------NEPV---FRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~---------~~~~---l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      ++.++|.|.+.+. | ...++|.+|++.+...         .+..   .....+...+...|.|++.+...
T Consensus        17 ~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~sl   87 (98)
T d1hdmb1          17 REPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGA   87 (98)
T ss_dssp             SCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTTS
T ss_pred             CCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeCCC
Confidence            5678999999986 4 6689999999766421         1111   12223445556689999998753

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.36  E-value=2.2e-06  Score=42.22  Aligned_cols=55  Identities=18%  Similarity=0.364  Sum_probs=37.7

Q ss_pred             CCccEEEEEEeccC----CCCeeEEeeC--CccCCC---------------------CCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGN----PVKTISWMKD--GKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~----~~~~v~w~~~--~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|.....    ....+.||+.  +.....                     .....|.|.+++.+|++.|.|..
T Consensus        15 ~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa~   94 (111)
T d2gsia1          15 LGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDAATYYCSH   94 (111)
T ss_dssp             TTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCCceEEEEE
Confidence            48999999987532    2234889983  222100                     12356899999999999999976


Q ss_pred             Ec
Q psy12725         54 RN   55 (119)
Q Consensus        54 ~~   55 (119)
                      ..
T Consensus        95 ~~   96 (111)
T d2gsia1          95 IR   96 (111)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.36  E-value=1.2e-06  Score=43.30  Aligned_cols=56  Identities=20%  Similarity=0.295  Sum_probs=39.2

Q ss_pred             CCccEEEEEEeccCC---CCeeEEeeC--CccCCC---------------------CCCCeEEEecCCCCCCeEEEEEEE
Q psy12725          1 MLALKFFTCKYEGNP---VKTISWMKD--GKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~---~~~v~w~~~--~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      .|++|+|.|...+..   ...+.|||.  ++.+..                     .....|.|..++.+|++.|.|...
T Consensus        14 ~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~   93 (112)
T d1lgva1          14 PGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYYCSSY   93 (112)
T ss_dssp             TTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCEEEEEeee
Confidence            489999999976532   235889972  221100                     123568999999999999999876


Q ss_pred             cC
Q psy12725         55 NE   56 (119)
Q Consensus        55 ~~   56 (119)
                      ..
T Consensus        94 ~~   95 (112)
T d1lgva1          94 DG   95 (112)
T ss_dssp             CS
T ss_pred             cC
Confidence            54

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=1.6e-06  Score=41.85  Aligned_cols=56  Identities=16%  Similarity=0.382  Sum_probs=38.1

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC--------CCC---eEEEecCCCCCCeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH--------NEP---VFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~--------~~~---~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      |+.++|.|.+.|. | ...|+|.+|+..+...        .+.   ......+...+...|+|.+.+..
T Consensus        18 ~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          18 GKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDS   86 (99)
T ss_dssp             TSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeCC
Confidence            6788999999986 4 5589999999876431        111   12222334556668999999864

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.36  E-value=1.3e-06  Score=43.21  Aligned_cols=55  Identities=13%  Similarity=0.337  Sum_probs=39.6

Q ss_pred             CCccEEEEEEeccCCCCeeEEee--CCccCC-------------------------CCCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMK--DGKPVP-------------------------DHNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~--~~~~~~-------------------------~~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|...+ ....+.|||  .++.+.                         ......|.|.+++.+|.+.|.|.+
T Consensus        13 ~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~   91 (113)
T d2ntsp1          13 RGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSALYLCAS   91 (113)
T ss_dssp             TTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccceeeeeee
Confidence            4899999998654 445789998  232210                         012346999999999999999987


Q ss_pred             EcC
Q psy12725         54 RNE   56 (119)
Q Consensus        54 ~~~   56 (119)
                      ...
T Consensus        92 ~~~   94 (113)
T d2ntsp1          92 SLA   94 (113)
T ss_dssp             ESS
T ss_pred             eCC
Confidence            653

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=4.8e-07  Score=42.88  Aligned_cols=36  Identities=25%  Similarity=0.431  Sum_probs=28.6

Q ss_pred             CccccCCCCcEEEEeEEccCC-CCeEEEEECCEEccc
Q psy12725         82 SDETLNPGPNYYFKCIASGNP-TPEISWYLDGKKLVN  117 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~~~~~~~  117 (119)
                      ....+.+|+.+.|.|.+.+.+ ...+.|||||..+..
T Consensus         8 p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~   44 (89)
T d1f2qa2           8 SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKY   44 (89)
T ss_dssp             SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCS
T ss_pred             CcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccc
Confidence            344577899999999997664 448999999998753

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.36  E-value=8.8e-07  Score=43.75  Aligned_cols=55  Identities=11%  Similarity=0.268  Sum_probs=38.9

Q ss_pred             CCccEEEEEEeccCC-CCeeEEeeC--CccCCC---------------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNP-VKTISWMKD--GKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~-~~~v~w~~~--~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|++|+|.|...+.. ...+.|||-  ++.+..                     .....|.|..+..+|+|.|.|.+..
T Consensus        12 ~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   90 (112)
T d1kgcd1          12 EEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYCILPL   90 (112)
T ss_dssp             TTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEEEECCC
T ss_pred             CCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeEeeeEec
Confidence            489999999986543 345899982  222210                     1224689999999999999997654

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.36  E-value=1.3e-06  Score=43.30  Aligned_cols=56  Identities=16%  Similarity=0.284  Sum_probs=39.9

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeCC--ccCC----C-----------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKDG--KPVP----D-----------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~~--~~~~----~-----------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|...+..  ...+.||+-.  ....    .                 .....|.|.+++.+|++.|.|....
T Consensus        14 ~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~YyCA~~~   93 (114)
T d2rhea_          14 PGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYYCAAWN   93 (114)
T ss_dssp             TTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEEEeecC
Confidence            489999999986543  4568999732  1110    0                 1235789999999999999998765


Q ss_pred             C
Q psy12725         56 E   56 (119)
Q Consensus        56 ~   56 (119)
                      .
T Consensus        94 ~   94 (114)
T d2rhea_          94 D   94 (114)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.1e-07  Score=45.60  Aligned_cols=37  Identities=11%  Similarity=0.272  Sum_probs=28.7

Q ss_pred             CCccccCCCCcEEEEeEEcc-CCC--CeEEEEECCEEccc
Q psy12725         81 FSDETLNPGPNYYFKCIASG-NPT--PEISWYLDGKKLVN  117 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~-~p~--~~~~W~~~~~~~~~  117 (119)
                      +....+..|+.++|.|.+.| .|.  +.+.|++++..+..
T Consensus         9 ~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~   48 (106)
T d1zxqa1           9 LQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHY   48 (106)
T ss_dssp             EESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEE
T ss_pred             CCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeee
Confidence            33446789999999999976 343  47999999998764

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.35  E-value=1.3e-06  Score=43.19  Aligned_cols=54  Identities=20%  Similarity=0.396  Sum_probs=36.9

Q ss_pred             CCccEEEEEEeccC-----CCCeeEEeeC--CccCCC---------------------CCCCeEEEecCCCCCCeEEEEE
Q psy12725          1 MLALKFFTCKYEGN-----PVKTISWMKD--GKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-----~~~~v~w~~~--~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      .|+.|+|.|...+.     ....+.||+.  ++.+..                     .....|.|.+++.+|++.|.|.
T Consensus        15 ~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eDsAvYYC~   94 (112)
T d1ncwl1          15 IGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAEDLGVYYCW   94 (112)
T ss_dssp             TTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCcCEeEEEE
Confidence            48999999986432     2345889973  222100                     1224699999999999999995


Q ss_pred             EE
Q psy12725         53 IR   54 (119)
Q Consensus        53 ~~   54 (119)
                      ..
T Consensus        95 ~~   96 (112)
T d1ncwl1          95 QG   96 (112)
T ss_dssp             EC
T ss_pred             cC
Confidence            53

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.34  E-value=1.2e-06  Score=43.25  Aligned_cols=55  Identities=22%  Similarity=0.426  Sum_probs=38.3

Q ss_pred             CCccEEEEEEeccC----CCCeeEEeeC--CccCCC---------------------CCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGN----PVKTISWMKD--GKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~----~~~~v~w~~~--~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|.....    ....+.|||.  ++.+..                     .....|.|.+++.+|+|.|.|.+
T Consensus        15 ~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   94 (111)
T d1j05a_          15 LGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATYYCQQ   94 (111)
T ss_dssp             TTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccCccEEEee
Confidence            48999999987432    2334899973  322210                     12357999999999999999976


Q ss_pred             Ec
Q psy12725         54 RN   55 (119)
Q Consensus        54 ~~   55 (119)
                      ..
T Consensus        95 ~~   96 (111)
T d1j05a_          95 TN   96 (111)
T ss_dssp             CS
T ss_pred             cC
Confidence            54

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.34  E-value=2.2e-06  Score=42.40  Aligned_cols=55  Identities=18%  Similarity=0.376  Sum_probs=38.2

Q ss_pred             CCccEEEEEEeccC-----CCCeeEEeeC--CccCCC---------------------CCCCeEEEecCCCCCCeEEEEE
Q psy12725          1 MLALKFFTCKYEGN-----PVKTISWMKD--GKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-----~~~~v~w~~~--~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      .|+.|+|.|...+.     ....+.||+.  ++....                     .....|.|.++..+|++.|.|.
T Consensus        16 ~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa   95 (113)
T d1n4xl_          16 LGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCF   95 (113)
T ss_dssp             TTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcccCEEEEEE
Confidence            48999999997542     2246899972  221100                     1225799999999999999996


Q ss_pred             EEc
Q psy12725         53 IRN   55 (119)
Q Consensus        53 ~~~   55 (119)
                      ...
T Consensus        96 ~~~   98 (113)
T d1n4xl_          96 QGS   98 (113)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            543

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.34  E-value=7.6e-07  Score=44.31  Aligned_cols=55  Identities=16%  Similarity=0.376  Sum_probs=37.9

Q ss_pred             CCccEEEEEEeccCCCC---eeEEeeC--CccCC-------------C-----------CCCCeEEEecCCCCCCeEEEE
Q psy12725          1 MLALKFFTCKYEGNPVK---TISWMKD--GKPVP-------------D-----------HNEPVFRIDSVRKEDKGMYQC   51 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~---~v~w~~~--~~~~~-------------~-----------~~~~~l~~~~~~~~d~g~y~C   51 (119)
                      .|+.|+|.|........   .+.|||.  ++...             .           .....|.|.+++.+|.|.|.|
T Consensus        13 ~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   92 (117)
T d1dqta_          13 SHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGLYLC   92 (117)
T ss_dssp             TTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             CCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccCEeEEE
Confidence            38899999998543322   3779982  22110             0           122579999999999999999


Q ss_pred             EEEc
Q psy12725         52 VIRN   55 (119)
Q Consensus        52 ~~~~   55 (119)
                      .+..
T Consensus        93 a~~~   96 (117)
T d1dqta_          93 KVEL   96 (117)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            8763

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.3e-06  Score=41.73  Aligned_cols=56  Identities=18%  Similarity=0.420  Sum_probs=37.9

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC----------CCC---eEEEecCCCCCCeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH----------NEP---VFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~----------~~~---~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      ++.++|.|.+.+. | ...++|.+||+.+...          ...   ......+...+...|+|.+.+..
T Consensus        15 ~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~s   85 (94)
T d1de4a1          15 SSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPG   85 (94)
T ss_dssp             SSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTT
T ss_pred             CCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            4678999999985 5 5589999998776321          111   12233345556678999999874

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.8e-07  Score=45.63  Aligned_cols=36  Identities=14%  Similarity=0.338  Sum_probs=29.2

Q ss_pred             cCCccccCCCCcEEEEeEEccCC-CCeEEEEECCEEc
Q psy12725         80 SFSDETLNPGPNYYFKCIASGNP-TPEISWYLDGKKL  115 (119)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~~~~~  115 (119)
                      .+....+..|+.+.|.|.+.+.| .|.+.|+|++..+
T Consensus         9 ~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~   45 (104)
T d2aw2a1           9 RQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTT   45 (104)
T ss_dssp             TTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSC
T ss_pred             cCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCccc
Confidence            34455688999999999999998 5899999987544

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.30  E-value=7.1e-08  Score=46.51  Aligned_cols=56  Identities=16%  Similarity=0.434  Sum_probs=39.8

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCCC-----------------------CCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVPD-----------------------HNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~~-----------------------~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      .|+.|+|.|.... ....+.|||-  ++.+..                       .....|.|.+++.+|+|.|.|.+..
T Consensus         7 eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~~   85 (96)
T d1ymmd1           7 EGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCATDT   85 (96)
T ss_dssp             SCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEEEEEE
T ss_pred             CCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeEeEec
Confidence            4899999998764 4457999972  222110                       0124689999999999999998765


Q ss_pred             CC
Q psy12725         56 EQ   57 (119)
Q Consensus        56 ~~   57 (119)
                      ..
T Consensus        86 ~~   87 (96)
T d1ymmd1          86 TS   87 (96)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.30  E-value=6.6e-07  Score=42.97  Aligned_cols=37  Identities=30%  Similarity=0.684  Sum_probs=28.4

Q ss_pred             cCCccccCCCCcEEEEeEEccCCC-CeEEEEE-CCEEcc
Q psy12725         80 SFSDETLNPGPNYYFKCIASGNPT-PEISWYL-DGKKLV  116 (119)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~-~~~~~~  116 (119)
                      .|....+..|+.+.|.|.+.+.|+ +.+.|++ +|..+.
T Consensus         6 ~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~   44 (97)
T d1epfa1           6 VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS   44 (97)
T ss_dssp             ESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEEC
T ss_pred             ECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeee
Confidence            344456778999999999999875 6899998 555543

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.30  E-value=1.6e-06  Score=42.69  Aligned_cols=56  Identities=18%  Similarity=0.364  Sum_probs=38.9

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeC--CccCC--------------C---------CCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKD--GKPVP--------------D---------HNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~--~~~~~--------------~---------~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|++|+|.|...+..  ...+.|||-  ++.+.              .         .....|.|.+++.+|++.|.|..
T Consensus        14 ~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~   93 (111)
T d1cd0a_          14 PGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADYYCQS   93 (111)
T ss_dssp             TTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCcEEEEee
Confidence            389999999986543  235899972  22110              0         12247899999999999999986


Q ss_pred             EcC
Q psy12725         54 RNE   56 (119)
Q Consensus        54 ~~~   56 (119)
                      ...
T Consensus        94 ~~~   96 (111)
T d1cd0a_          94 YDA   96 (111)
T ss_dssp             EET
T ss_pred             ccC
Confidence            543

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=7.4e-07  Score=44.07  Aligned_cols=55  Identities=25%  Similarity=0.394  Sum_probs=38.1

Q ss_pred             CccEEEEEEeccC--CCCeeEEeeC--CccCC-----------C---------------CCCCeEEEecCCCCCCeEEEE
Q psy12725          2 LALKFFTCKYEGN--PVKTISWMKD--GKPVP-----------D---------------HNEPVFRIDSVRKEDKGMYQC   51 (119)
Q Consensus         2 g~~~~l~c~~~~~--~~~~v~w~~~--~~~~~-----------~---------------~~~~~l~~~~~~~~d~g~y~C   51 (119)
                      |+.|+|.|...+.  ....+.|||-  +....           .               .....|.|.+++.+|+|.|.|
T Consensus        14 G~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Dsg~Y~C   93 (113)
T d1smoa_          14 GQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQC   93 (113)
T ss_dssp             TCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccCceEEE
Confidence            8999999987532  3456889972  21110           0               011358899999999999999


Q ss_pred             EEEcC
Q psy12725         52 VIRNE   56 (119)
Q Consensus        52 ~~~~~   56 (119)
                      .+...
T Consensus        94 av~~~   98 (113)
T d1smoa_          94 VIYQP   98 (113)
T ss_dssp             EECCT
T ss_pred             EEECC
Confidence            88654

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=1.5e-06  Score=40.87  Aligned_cols=51  Identities=22%  Similarity=0.533  Sum_probs=41.4

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCC-CCCeEEEEEEE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRK-EDKGMYQCVIR   54 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~-~d~g~y~C~~~   54 (119)
                      |.+|+|+|...+  ...|.|-+++..++......|.+...+. +++|.|.|...
T Consensus        14 GTtV~LTCP~~~--~~~I~Wkkn~~~i~g~~~~~L~L~~FSE~e~SGyY~C~~~   65 (100)
T d1jbja2          14 GTSVELTCPLDS--DENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTP   65 (100)
T ss_dssp             TTEEEEECSSCC--CTTCEEEETTEEECSCCCSEEEEESCCTTTSCEEEEEECS
T ss_pred             CCEEEEECCCCC--CCceEEeeccccCCCCCCcEEEEccccccccCcceEEecC
Confidence            889999998654  2469999999998877777888888765 79999999643

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.29  E-value=2.6e-06  Score=40.86  Aligned_cols=55  Identities=13%  Similarity=0.183  Sum_probs=41.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeCCccCCC----------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKDGKPVPD----------HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~~~~~~~----------~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|.... ....+.++|++.....          .....+.|..++..|.|.|.|.....
T Consensus        15 ~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1          15 SEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             TTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CCCcEEEEECCCC-CCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            3899999999864 4557888887753211          12356899999999999999988654

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2e-06  Score=42.81  Aligned_cols=55  Identities=18%  Similarity=0.394  Sum_probs=38.2

Q ss_pred             CCccEEEEEEeccCCCC---eeEEeeC--CccCC-------------C-----------CCCCeEEEecCCCCCCeEEEE
Q psy12725          1 MLALKFFTCKYEGNPVK---TISWMKD--GKPVP-------------D-----------HNEPVFRIDSVRKEDKGMYQC   51 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~---~v~w~~~--~~~~~-------------~-----------~~~~~l~~~~~~~~d~g~y~C   51 (119)
                      .|+.|+|.|........   .+.|||.  ++...             .           .....|.|.+++.+|.|.|.|
T Consensus        13 ~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   92 (118)
T d1i8lc_          13 SRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYIC   92 (118)
T ss_dssp             SSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGCEEEEE
T ss_pred             CCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCCEEEEE
Confidence            37899999998644322   4889973  22110             0           012469999999999999999


Q ss_pred             EEEc
Q psy12725         52 VIRN   55 (119)
Q Consensus        52 ~~~~   55 (119)
                      .+..
T Consensus        93 a~~~   96 (118)
T d1i8lc_          93 KVEL   96 (118)
T ss_dssp             EEEE
T ss_pred             eEec
Confidence            8764

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.2e-06  Score=42.57  Aligned_cols=45  Identities=16%  Similarity=0.241  Sum_probs=35.7

Q ss_pred             CCCeeeecCCccccCCCCcEEEEeEEcc-CCCC--eEEEEECCEEccc
Q psy12725         73 DPPVIKESFSDETLNPGPNYYFKCIASG-NPTP--EISWYLDGKKLVN  117 (119)
Q Consensus        73 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~~~W~~~~~~~~~  117 (119)
                      .|+.+...+....+..|+.++|.|.+.| .|.+  .+.|++++..+..
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~   50 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKR   50 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccc
Confidence            4677777776667889999999999876 4555  5889999988764

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.28  E-value=9.8e-07  Score=43.75  Aligned_cols=56  Identities=20%  Similarity=0.388  Sum_probs=39.1

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeC--CccCC--------C----------------CCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKD--GKPVP--------D----------------HNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~--~~~~~--------~----------------~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|..... ....+.|||.  +..+.        .                .....|.|.+++.+|+|.|.|.+
T Consensus        13 ~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   92 (115)
T d1fo0a_          13 EKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVYFCAM   92 (115)
T ss_dssp             TTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCcccccccccee
Confidence            48999999987543 3446889972  21110        0                01246999999999999999987


Q ss_pred             EcC
Q psy12725         54 RNE   56 (119)
Q Consensus        54 ~~~   56 (119)
                      ...
T Consensus        93 ~~~   95 (115)
T d1fo0a_          93 RGD   95 (115)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            754

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.28  E-value=3.2e-06  Score=40.71  Aligned_cols=58  Identities=12%  Similarity=0.367  Sum_probs=37.3

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC---------CCC---eEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH---------NEP---VFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~---------~~~---~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      ++.++|.|.+.+. | ...|+|.+|+..+...         ...   ......+...+...|+|++.+....
T Consensus        18 ~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~sl~   89 (98)
T d1d5mb1          18 QHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVT   89 (98)
T ss_dssp             ---CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTTCS
T ss_pred             CCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECCCC
Confidence            4567899999886 4 4589999998766321         111   2223345566777899999987543

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.28  E-value=3.7e-07  Score=44.87  Aligned_cols=56  Identities=18%  Similarity=0.313  Sum_probs=39.5

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC----C-----------------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP----D-----------------HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~----~-----------------~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      .|+.|+|.|.........+.|||-  ++.+.    .                 .....|.|.+++.+|+|.|.|.....
T Consensus        13 ~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~   91 (108)
T d1nfde1          13 VGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCLSSYG   91 (108)
T ss_dssp             TTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEEEEET
T ss_pred             CCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEEEEeecC
Confidence            489999999886544456899972  22110    0                 01246899999999999999987643

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.27  E-value=3.5e-06  Score=41.53  Aligned_cols=54  Identities=15%  Similarity=0.262  Sum_probs=39.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEee--CCccCC-------------------------CCCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMK--DGKPVP-------------------------DHNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~--~~~~~~-------------------------~~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.++|.|.... ....+.|||  .++.+.                         ......|.|..+..+|++.|.|..
T Consensus        13 ~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsavYyCA~   91 (112)
T d2bnub1          13 TGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYFCAS   91 (112)
T ss_dssp             TTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHCEEEEEee
Confidence            4899999998754 456799997  222110                         012357999999999999999987


Q ss_pred             Ec
Q psy12725         54 RN   55 (119)
Q Consensus        54 ~~   55 (119)
                      ..
T Consensus        92 ~~   93 (112)
T d2bnub1          92 SY   93 (112)
T ss_dssp             EC
T ss_pred             cC
Confidence            64

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2e-07  Score=47.01  Aligned_cols=36  Identities=17%  Similarity=0.288  Sum_probs=30.8

Q ss_pred             CccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         82 SDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ....+..|+.+.|.|.+.|.|.|.+.|++++..+..
T Consensus        17 ~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~   52 (130)
T d1gxea_          17 DTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNK   52 (130)
T ss_dssp             CEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCS
T ss_pred             CCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccC
Confidence            345688999999999999999999999998876643

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=5e-07  Score=42.84  Aligned_cols=37  Identities=19%  Similarity=0.532  Sum_probs=30.4

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcccC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  118 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~  118 (119)
                      +.+..+..|+.+.|.|.+. .|.+.+.|++++..+..+
T Consensus         7 l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~   43 (90)
T d1x44a1           7 LEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPG   43 (90)
T ss_dssp             CCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCS
T ss_pred             CCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCC
Confidence            4456688999999999984 578899999999987643

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.26  E-value=4.6e-06  Score=41.13  Aligned_cols=55  Identities=15%  Similarity=0.338  Sum_probs=39.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC-------------------------CCCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP-------------------------DHNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~-------------------------~~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|.... ....+.|||-  +..+.                         ......|.|..++.+|+|.|.|.+
T Consensus        14 ~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~   92 (113)
T d1j8he1          14 TGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQTSMYLCAS   92 (113)
T ss_dssp             TTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCcccEEeeE
Confidence            4899999998643 4567889972  21110                         012356899999999999999988


Q ss_pred             EcC
Q psy12725         54 RNE   56 (119)
Q Consensus        54 ~~~   56 (119)
                      ...
T Consensus        93 ~~~   95 (113)
T d1j8he1          93 SST   95 (113)
T ss_dssp             ECT
T ss_pred             ccC
Confidence            753

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=3.3e-06  Score=40.33  Aligned_cols=57  Identities=16%  Similarity=0.308  Sum_probs=38.6

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC--------CCC---eEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH--------NEP---VFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~--------~~~---~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      |+.++|.|.+.|. | ...|.|.+|+..+...        ...   ......+...+...|+|.+.+...
T Consensus        15 ~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~sl   84 (94)
T d1t7va1          15 GEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSSL   84 (94)
T ss_dssp             TSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETTC
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECCC
Confidence            6789999999986 5 4589999999776431        111   122233445566689999998743

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=5.9e-07  Score=42.40  Aligned_cols=35  Identities=20%  Similarity=0.461  Sum_probs=28.4

Q ss_pred             CccccCCCCcEEEEeEEc-cCCCCeEEEEECCEEcc
Q psy12725         82 SDETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKLV  116 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~~  116 (119)
                      ....+.+|+.+.|.|.+. +.|.+.+.|++++..+.
T Consensus        10 ~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~   45 (89)
T d1gl4b_          10 RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL   45 (89)
T ss_dssp             CEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCC
T ss_pred             CeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceee
Confidence            345678999999999986 56788999999876654

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.22  E-value=4.8e-06  Score=40.27  Aligned_cols=57  Identities=18%  Similarity=0.494  Sum_probs=37.3

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC---------CCCe---EEEecCCCCCCeEEEEEEEcCCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH---------NEPV---FRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~---------~~~~---l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      |+.++|.|.+.+. | ...|.|.+||+.+...         ...+   .....+...+...|+|++.+...
T Consensus        19 ~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~sl   89 (101)
T d1fnga1          19 GEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWGL   89 (101)
T ss_dssp             TSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTTC
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcCCCCCEEEEEEEECCC
Confidence            6778999999987 4 5589999998765421         1111   12222334455679999998753

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.22  E-value=1.9e-06  Score=43.03  Aligned_cols=56  Identities=23%  Similarity=0.484  Sum_probs=39.8

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeC--CccCC--------------C---------CCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKD--GKPVP--------------D---------HNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~--~~~~~--------------~---------~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.++|.|...+..  ...+.|||.  ++.+.              .         .+...|.|..++.+|.|.|.|..
T Consensus        15 ~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Dsa~YyCA~   94 (120)
T d1hxma1          15 IGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSYYCAC   94 (120)
T ss_dssp             TTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCCceeecCc
Confidence            489999999987543  346899972  22110              0         01257899999999999999987


Q ss_pred             EcC
Q psy12725         54 RNE   56 (119)
Q Consensus        54 ~~~   56 (119)
                      ...
T Consensus        95 ~~~   97 (120)
T d1hxma1          95 DTL   97 (120)
T ss_dssp             ECC
T ss_pred             ccC
Confidence            653

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.21  E-value=1.7e-06  Score=42.74  Aligned_cols=54  Identities=20%  Similarity=0.349  Sum_probs=37.3

Q ss_pred             CCccEEEEEEeccC-----CCCeeEEeeC--CccCCC---------------------CCCCeEEEecCCCCCCeEEEEE
Q psy12725          1 MLALKFFTCKYEGN-----PVKTISWMKD--GKPVPD---------------------HNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-----~~~~v~w~~~--~~~~~~---------------------~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      .|++|+|.|...+.     ....+.||+.  +.....                     .....|.|.+++.+|++.|.|.
T Consensus        15 ~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~DsAvYyCa   94 (112)
T d1mjul1          15 PGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVGVYYCL   94 (112)
T ss_dssp             TTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCCceEEEE
Confidence            48999999987542     2346899972  222110                     1224689999999999999995


Q ss_pred             EE
Q psy12725         53 IR   54 (119)
Q Consensus        53 ~~   54 (119)
                      ..
T Consensus        95 ~~   96 (112)
T d1mjul1          95 QH   96 (112)
T ss_dssp             EC
T ss_pred             eC
Confidence            43

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.20  E-value=3.1e-06  Score=41.72  Aligned_cols=55  Identities=13%  Similarity=0.258  Sum_probs=39.1

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC-------------------------CCCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP-------------------------DHNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~-------------------------~~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|.... ....+.|||-  +..+.                         ......|.|..++.+|++.|.|.+
T Consensus        12 ~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~   90 (112)
T d2cdeb1          12 TGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQYLCAS   90 (112)
T ss_dssp             TTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCSEEEEEE
T ss_pred             CCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccccccEEEEE
Confidence            4899999999753 4467899983  22110                         012356889999999999999987


Q ss_pred             EcC
Q psy12725         54 RNE   56 (119)
Q Consensus        54 ~~~   56 (119)
                      ...
T Consensus        91 ~~~   93 (112)
T d2cdeb1          91 SEN   93 (112)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            654

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=7e-07  Score=43.39  Aligned_cols=39  Identities=18%  Similarity=0.381  Sum_probs=30.5

Q ss_pred             CeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCE
Q psy12725         75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK  113 (119)
Q Consensus        75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~  113 (119)
                      +.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++.
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~   43 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQG   43 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEET
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeee
Confidence            334444445567899999999999999999999998654

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.19  E-value=5.4e-06  Score=41.55  Aligned_cols=55  Identities=18%  Similarity=0.465  Sum_probs=38.3

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeC--CccCC----------------C-C-----------CCCeEEEecCCCCCCeE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKD--GKPVP----------------D-H-----------NEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~--~~~~~----------------~-~-----------~~~~l~~~~~~~~d~g~   48 (119)
                      .|++++|.|.+.+..  ...+.|||-  ++.+.                . .           +...|.|.+++.+|.+.
T Consensus        15 ~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~~Dsa~   94 (123)
T d1hxmb1          15 LSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDIAT   94 (123)
T ss_dssp             TTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccccccCcE
Confidence            389999999987653  446889972  21110                0 0           11358899999999999


Q ss_pred             EEEEEEc
Q psy12725         49 YQCVIRN   55 (119)
Q Consensus        49 y~C~~~~   55 (119)
                      |.|....
T Consensus        95 YyCA~~~  101 (123)
T d1hxmb1          95 YYCALWE  101 (123)
T ss_dssp             EEEEEEE
T ss_pred             EEEeeeC
Confidence            9998754

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.18  E-value=4.4e-06  Score=41.16  Aligned_cols=55  Identities=11%  Similarity=0.183  Sum_probs=39.3

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCCC------------------------CCCCeEEEecCCCCCCeEEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVPD------------------------HNEPVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~~------------------------~~~~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      .|+.|+|.|...+.....+.|||-  ++.+..                        .....+.|...+.+|++.|.|...
T Consensus        15 ~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~dsa~Y~Ca~~   94 (112)
T d1fo0b_          15 RGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGRTLYCTCS   94 (112)
T ss_dssp             TTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSCEEEEEEEE
T ss_pred             CCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccCCccEEEEEe
Confidence            489999999987655567899983  222100                        022567888889999999999865


Q ss_pred             c
Q psy12725         55 N   55 (119)
Q Consensus        55 ~   55 (119)
                      .
T Consensus        95 ~   95 (112)
T d1fo0b_          95 A   95 (112)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=2.1e-06  Score=41.06  Aligned_cols=41  Identities=15%  Similarity=0.416  Sum_probs=31.4

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      +|.+..  .+..+.+|+.+.|.|.+.+ +++.+.|+++|..+..
T Consensus         5 ~P~i~~--~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~   45 (96)
T d1l6za2           5 QPFLQV--TNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQL   45 (96)
T ss_dssp             CCCEEC--SCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCC
T ss_pred             CCeEEc--CceEEeCCCeEEEEEccCC-CCCCEEEEEeeeeccc
Confidence            454443  3456789999999998765 5678999999998865

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.16  E-value=7.7e-06  Score=39.39  Aligned_cols=56  Identities=16%  Similarity=0.394  Sum_probs=37.4

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC---------CCCe---EEEecCCCCCCeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH---------NEPV---FRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~---------~~~~---l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      |+.++|.|.+.+. | ...|+|.+||..+...         .+..   .....+...+...|+|++.+..
T Consensus        19 ~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s   88 (99)
T d1uvqa1          19 GQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWG   88 (99)
T ss_dssp             TSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence            6778999999986 4 5689999998766421         1111   1222334455667999999874

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=4.5e-06  Score=40.45  Aligned_cols=32  Identities=22%  Similarity=0.646  Sum_probs=27.3

Q ss_pred             CCCCcEEEEeEEccCCCCeEEEEECCEEcccC
Q psy12725         87 NPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  118 (119)
Q Consensus        87 ~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~  118 (119)
                      ..+....+.|.+.|.|.|.+.|+++|..+.++
T Consensus        14 ~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~   45 (103)
T d1wwbx_          14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNES   45 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCC
T ss_pred             ccceeEEEEEEEEEeCCCEEEEEECCEEeeee
Confidence            35677789999999999999999999998653

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.7e-06  Score=42.42  Aligned_cols=39  Identities=15%  Similarity=0.310  Sum_probs=31.2

Q ss_pred             CeeeecCCccccCCCCcEEEEeEEccCC---CCeEEEEECCE
Q psy12725         75 PVIKESFSDETLNPGPNYYFKCIASGNP---TPEISWYLDGK  113 (119)
Q Consensus        75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p---~~~~~W~~~~~  113 (119)
                      +.+...|....+..|+.+.|.|.+.+.|   .|.+.|++++.
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~   46 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKW   46 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTT
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCce
Confidence            3455556667788999999999999988   46899999764

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.14  E-value=3.7e-06  Score=41.97  Aligned_cols=55  Identities=20%  Similarity=0.395  Sum_probs=38.0

Q ss_pred             CCccEEEEEEeccCC--CCeeEEeeC--CccCC----------------C-----------CCCCeEEEecCCCCCCeEE
Q psy12725          1 MLALKFFTCKYEGNP--VKTISWMKD--GKPVP----------------D-----------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~--~~~v~w~~~--~~~~~----------------~-----------~~~~~l~~~~~~~~d~g~y   49 (119)
                      .|+.|+|.|...+..  ...+.|||-  ++.+.                .           .....|.|.+++.+|++.|
T Consensus        15 ~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~Dsa~Y   94 (120)
T d1ypzf1          15 RDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIY   94 (120)
T ss_dssp             TTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGCSEE
T ss_pred             CCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccccccceeE
Confidence            389999999876532  346889972  22110                0           0123589999999999999


Q ss_pred             EEEEEc
Q psy12725         50 QCVIRN   55 (119)
Q Consensus        50 ~C~~~~   55 (119)
                      .|....
T Consensus        95 yCA~~~  100 (120)
T d1ypzf1          95 YCSYGE  100 (120)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            997654

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.13  E-value=1.8e-05  Score=38.30  Aligned_cols=57  Identities=18%  Similarity=0.409  Sum_probs=37.8

Q ss_pred             CCccEEEEEEeccC-C-CCeeEEeeCCccCCCC--------CCCeE---EEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGN-P-VKTISWMKDGKPVPDH--------NEPVF---RIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~--------~~~~l---~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      +|+..+|.|.+.+. | ...|.|.+|+..+...        .+...   ....+...+...|+|.+.+..
T Consensus        17 ~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~~   86 (103)
T d1hdma1          17 FGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEP   86 (103)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEEEETT
T ss_pred             cCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEEEeCC
Confidence            37788999999986 4 4589999999775431        11111   112234455567999999975

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=3.1e-05  Score=35.14  Aligned_cols=53  Identities=25%  Similarity=0.520  Sum_probs=36.5

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeCCccCCCCCC----CeEEEecCCCCCCeEEEEEEEcC
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKDGKPVPDHNE----PVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~~~~~~~~~~----~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      |..+.|.|.....+  ..--.|.|+++.+.....    ..+.+.  ..++.|.|.|++-..
T Consensus        12 ~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~~~tey~V~--~~D~SGeY~CVFl~~   70 (80)
T d3b5ha2          12 GSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVD--SDDQWGEYSCVFLPE   70 (80)
T ss_dssp             TTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEEEEEEC--GGGCCEEEEEEEEST
T ss_pred             CCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCCCceEEEEe--cCCCCceEEEEEcCC
Confidence            67789999997653  235679999998865322    223333  367789999997643

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.9e-06  Score=40.70  Aligned_cols=31  Identities=19%  Similarity=0.343  Sum_probs=26.6

Q ss_pred             ccCCCCcEEEEeEEccCCCCeEEEEECCEEc
Q psy12725         85 TLNPGPNYYFKCIASGNPTPEISWYLDGKKL  115 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~  115 (119)
                      .+..|+.+.|.|.+.|.|.|.+.|++++..+
T Consensus        12 ~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~   42 (90)
T d1vcaa2          12 LAQIGDSVSLTCSTTGCESPFFSWRTQIDSP   42 (90)
T ss_dssp             EEETTSCEEEEEEEESCSSCEEEEEETTCCC
T ss_pred             EEECCCEEEEEEeccCCCCceEEEEecCccc
Confidence            3467999999999999999999999876544

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.12  E-value=9.9e-06  Score=39.92  Aligned_cols=55  Identities=20%  Similarity=0.373  Sum_probs=38.4

Q ss_pred             CCccEEEEEEeccCCCCeeEEeeC--CccCC-------------------------CCCCCeEEEecCCCCCCeEEEEEE
Q psy12725          1 MLALKFFTCKYEGNPVKTISWMKD--GKPVP-------------------------DHNEPVFRIDSVRKEDKGMYQCVI   53 (119)
Q Consensus         1 ~g~~~~l~c~~~~~~~~~v~w~~~--~~~~~-------------------------~~~~~~l~~~~~~~~d~g~y~C~~   53 (119)
                      .|+.|+|.|.... ....+.|||.  ++.+.                         ......|.|.+++.+|++.|.|..
T Consensus        15 ~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   93 (113)
T d1nfdb1          15 KGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFCAS   93 (113)
T ss_dssp             TTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGGCEEECEEE
T ss_pred             CCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCCceeEEEEe
Confidence            4899999998654 3457999973  21110                         011246889999999999999987


Q ss_pred             EcC
Q psy12725         54 RNE   56 (119)
Q Consensus        54 ~~~   56 (119)
                      ...
T Consensus        94 ~~~   96 (113)
T d1nfdb1          94 SLR   96 (113)
T ss_dssp             ESS
T ss_pred             ecC
Confidence            643

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=3.9e-06  Score=40.98  Aligned_cols=34  Identities=21%  Similarity=0.514  Sum_probs=25.7

Q ss_pred             ccCCCCcEEE---EeEEccCCCCeEEEEECCEEcccC
Q psy12725         85 TLNPGPNYYF---KCIASGNPTPEISWYLDGKKLVNA  118 (119)
Q Consensus        85 ~~~~g~~~~l---~C~~~~~p~~~~~W~~~~~~~~~~  118 (119)
                      .+..|....+   .|.+.|.|.|.+.|++||+.+..+
T Consensus         8 ~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~   44 (107)
T d1he7a_           8 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNET   44 (107)
T ss_dssp             CCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCC
T ss_pred             EECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCc
Confidence            4445555554   458899999999999999998653

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=2.4e-06  Score=42.09  Aligned_cols=35  Identities=20%  Similarity=0.354  Sum_probs=28.7

Q ss_pred             ecCCccccCCCCcEEEEeEEccCC---CCeEEEEECCE
Q psy12725         79 ESFSDETLNPGPNYYFKCIASGNP---TPEISWYLDGK  113 (119)
Q Consensus        79 ~~~~~~~~~~g~~~~l~C~~~~~p---~~~~~W~~~~~  113 (119)
                      ..|....+..|+.+.|.|.+.|.|   .|.+.|+|++.
T Consensus         5 ~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~   42 (113)
T d2dava1           5 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKW   42 (113)
T ss_dssp             SCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSS
T ss_pred             ECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeec
Confidence            345566788999999999999987   47899999764

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.10  E-value=1.4e-07  Score=44.77  Aligned_cols=37  Identities=19%  Similarity=0.295  Sum_probs=30.5

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEECCEEcccC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVNA  118 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~  118 (119)
                      +.+..+.+|+++.|.|.+ +.|.|.+.|++||..+..+
T Consensus         8 l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~   44 (89)
T d1tiua_           8 LYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTAS   44 (89)
T ss_dssp             CCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSS
T ss_pred             CcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccc
Confidence            445668899999999997 4688899999999988653

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.09  E-value=8.8e-06  Score=39.03  Aligned_cols=58  Identities=9%  Similarity=0.310  Sum_probs=36.5

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC---------CCC---eEEEecCCCCCCeEEEEEEEcCCCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH---------NEP---VFRIDSVRKEDKGMYQCVIRNEQES   59 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~---------~~~---~l~~~~~~~~d~g~y~C~~~~~~~~   59 (119)
                      |+.++|.|.+.+. | ...|.|.+|+..+...         ...   ......+...+...|+|++.+....
T Consensus        16 ~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl~   87 (97)
T d1uvqb1          16 NHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQ   87 (97)
T ss_dssp             ---CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTTCS
T ss_pred             CCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCCCC
Confidence            5667899999886 4 5689999998665321         111   1223334555667899999987533

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.09  E-value=5.5e-06  Score=39.28  Aligned_cols=55  Identities=18%  Similarity=0.392  Sum_probs=35.4

Q ss_pred             ccEEEEEEeccC-C-CCeeEEeeCCccCCCC-------CCCe---EEEecCCCCCCeEEEEEEEcCC
Q psy12725          3 ALKFFTCKYEGN-P-VKTISWMKDGKPVPDH-------NEPV---FRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         3 ~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~-------~~~~---l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      ..++|.|.+.|. | ...|+|.+|+..+...       .+..   .....+...+...|+|++.+..
T Consensus        16 ~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~~~~~~~ytC~V~H~s   82 (91)
T d3frua1          16 GSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVKRGDEHHYQCQVEHEG   82 (91)
T ss_dssp             TEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEETTCGGGEEEEEECTT
T ss_pred             CCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEECCCCCCEEEEEEEeCC
Confidence            468999999986 5 4589999999776432       1111   1111223345567999998864

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.09  E-value=1.3e-06  Score=42.21  Aligned_cols=36  Identities=19%  Similarity=0.397  Sum_probs=28.7

Q ss_pred             eeecCCccccCCCCcEEEEeEEccCCCCeEEEEECC
Q psy12725         77 IKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG  112 (119)
Q Consensus        77 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~  112 (119)
                      +...+....+.+|+.+.|.|.+.+.|.|.+.|++++
T Consensus         4 V~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~   39 (102)
T d1f97a1           4 VYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQ   39 (102)
T ss_dssp             EECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEE
T ss_pred             EEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEecc
Confidence            334444556789999999999999999999999753

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=8.7e-06  Score=39.48  Aligned_cols=31  Identities=23%  Similarity=0.551  Sum_probs=25.2

Q ss_pred             CCCcEEEEeEEccCCCCeEEEEECCEEcccC
Q psy12725         88 PGPNYYFKCIASGNPTPEISWYLDGKKLVNA  118 (119)
Q Consensus        88 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~  118 (119)
                      .+....+.|.+.|.|.|.+.|+++|+.+..+
T Consensus        16 ~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~   46 (105)
T d1wwca_          16 LRLEHCIEFVVRGNPPPTLHWLHNGQPLRES   46 (105)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEECCCS
T ss_pred             EEEEEEEEEEEEEeCCCeEEEEeCccccCCC
Confidence            3445667889999999999999999988653

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.5e-06  Score=41.15  Aligned_cols=33  Identities=12%  Similarity=0.236  Sum_probs=26.6

Q ss_pred             ccccCCCCcEEEEeEEc-cCCCCeEEEEECCEEc
Q psy12725         83 DETLNPGPNYYFKCIAS-GNPTPEISWYLDGKKL  115 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~  115 (119)
                      ...+..|+++.|.|.+. +.|.+.+.|++++..+
T Consensus        12 ~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~   45 (90)
T d1gsma1          12 VVAVALGASRQLTCRLACADRGASVQWRGLDTSL   45 (90)
T ss_dssp             EEEEETTCCEEEEEEECCSSTTCEEEEESSTTTT
T ss_pred             eEEEEeCCcEEEEEEecCCCCccEEEEEEeeeee
Confidence            44567999999999874 7788899999876544

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.05  E-value=4.9e-07  Score=44.15  Aligned_cols=34  Identities=18%  Similarity=0.332  Sum_probs=28.3

Q ss_pred             ccccCCCCcEEEEeEE-ccCCCCeEEEEECCEEcc
Q psy12725         83 DETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKLV  116 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~  116 (119)
                      ...+.+|+.+.|.|.+ .+.|.+.+.|+++|..+.
T Consensus        13 ~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~   47 (105)
T d1cs6a2          13 PVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNF   47 (105)
T ss_dssp             CEEEETTSCEEECCCCCSEESCCEEEEEESSTTCB
T ss_pred             CEEEeCCCeEEEEEEccCCCCCCEEEEEEeecccc
Confidence            3468899999999987 678889999999986543

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.05  E-value=9.9e-06  Score=40.28  Aligned_cols=53  Identities=19%  Similarity=0.502  Sum_probs=36.5

Q ss_pred             CccEEEEEEeccCC----CCeeEEeeC--CccCC------------------C---------CCCCeEEEecCCCCCCeE
Q psy12725          2 LALKFFTCKYEGNP----VKTISWMKD--GKPVP------------------D---------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         2 g~~~~l~c~~~~~~----~~~v~w~~~--~~~~~------------------~---------~~~~~l~~~~~~~~d~g~   48 (119)
                      |++|+|.|.+.|..    ...+.|||.  ++.+.                  .         .+...|.|.+++.+|.+.
T Consensus        15 G~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~eDsAv   94 (120)
T d2agjh1          15 TQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVDTAT   94 (120)
T ss_dssp             SSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGGGCEE
T ss_pred             CCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeeccceE
Confidence            89999999987642    235779972  22210                  0         012458999999999999


Q ss_pred             EEEEEE
Q psy12725         49 YQCVIR   54 (119)
Q Consensus        49 y~C~~~   54 (119)
                      |.|...
T Consensus        95 YyCAr~  100 (120)
T d2agjh1          95 YYCART  100 (120)
T ss_dssp             EEEEEE
T ss_pred             EeeEec
Confidence            999644

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=6.8e-06  Score=38.79  Aligned_cols=53  Identities=15%  Similarity=0.319  Sum_probs=34.7

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC---------CC------CeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH---------NE------PVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~---------~~------~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      ++.++|.|.+.+. | ...|+|.++++.+...         .+      +.|.+   ...+...|+|++.+..
T Consensus        15 ~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v---~~~~~~~ytC~V~H~~   84 (89)
T d2mhaa1          15 EDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVV---PLGKEQYYTCHVYHQG   84 (89)
T ss_dssp             SSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEE---ESSTTTTCEEEEECSS
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEe---cCcCCCEEEEEEEECC
Confidence            4578999999986 4 4578999998766421         11      12333   2334446999998764

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.1e-05  Score=38.58  Aligned_cols=56  Identities=20%  Similarity=0.381  Sum_probs=35.8

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC----------CC--CeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH----------NE--PVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~----------~~--~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      ++.++|.|.+.+. | ...|+|.++++.+...          ..  .......+...+...|+|++.+..
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~V~H~~   84 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEG   84 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEECTT
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEEEEECc
Confidence            3568999999987 4 5579999998765321          11  111222233444567999999864

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=2.3e-06  Score=41.74  Aligned_cols=57  Identities=16%  Similarity=0.381  Sum_probs=35.9

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC----------CCC------eEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH----------NEP------VFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~----------~~~------~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      ++.++|.|.+.+. | ...|.|.+|+..+...          .+.      .|.+..-.-.....|+|.+.+...
T Consensus        19 ~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          19 RDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAA   93 (105)
T ss_dssp             SCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTS
T ss_pred             CCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCC
Confidence            4678999999875 4 4689999998765321          111      222222222334579999998654

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=1.8e-05  Score=38.78  Aligned_cols=55  Identities=18%  Similarity=0.345  Sum_probs=38.6

Q ss_pred             CccEEEEEEeccC--CCCeeEEeeC--CccC----CC----------------------CCCCeEEEecCCCCCCeEEEE
Q psy12725          2 LALKFFTCKYEGN--PVKTISWMKD--GKPV----PD----------------------HNEPVFRIDSVRKEDKGMYQC   51 (119)
Q Consensus         2 g~~~~l~c~~~~~--~~~~v~w~~~--~~~~----~~----------------------~~~~~l~~~~~~~~d~g~y~C   51 (119)
                      |++++|.|...+.  ....+.|+|.  ++..    ..                      .....|.|.+++.+|.|.|.|
T Consensus        10 G~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDsa~YyC   89 (110)
T d1u9ka_          10 GQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDSGLYRC   89 (110)
T ss_dssp             TCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred             CCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCCEEEEE
Confidence            8999999998653  4456789973  2211    00                      011358889999999999999


Q ss_pred             EEEcC
Q psy12725         52 VIRNE   56 (119)
Q Consensus        52 ~~~~~   56 (119)
                      .....
T Consensus        90 a~~~~   94 (110)
T d1u9ka_          90 VIYHP   94 (110)
T ss_dssp             EEECT
T ss_pred             EEeCC
Confidence            88654

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.00  E-value=6.3e-05  Score=37.00  Aligned_cols=55  Identities=22%  Similarity=0.414  Sum_probs=38.3

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC------------------CC---------CCCCeEEEecCCCCCCeEEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV------------------PD---------HNEPVFRIDSVRKEDKGMYQ   50 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~------------------~~---------~~~~~l~~~~~~~~d~g~y~   50 (119)
                      |+++.|.|.+.|..  .-.+.|+|-  ++.+                  ..         .+...|.|..++.+|.+.|.
T Consensus        15 g~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eDtAvYy   94 (116)
T d7fabh1          15 SQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADTAVYY   94 (116)
T ss_dssp             TSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccccceEEE
Confidence            89999999998764  346789872  2211                  00         01235888899999999999


Q ss_pred             EEEEcC
Q psy12725         51 CVIRNE   56 (119)
Q Consensus        51 C~~~~~   56 (119)
                      |.....
T Consensus        95 CAr~~~  100 (116)
T d7fabh1          95 CARNLI  100 (116)
T ss_dssp             EEEECS
T ss_pred             eeeecC
Confidence            976543

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.3e-05  Score=37.19  Aligned_cols=53  Identities=23%  Similarity=0.452  Sum_probs=39.0

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCCC--------CCeEEEecCCC-CCCeEEEEEEEcC
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDHN--------EPVFRIDSVRK-EDKGMYQCVIRNE   56 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~--------~~~l~~~~~~~-~d~g~y~C~~~~~   56 (119)
                      |.+|+|+|.-  .....+.|-+++..+....        ...|.+...+. +++|.|.|.+...
T Consensus        10 GTtV~LTCP~--~~~~~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~~   71 (91)
T d1xiwa_          10 GTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGS   71 (91)
T ss_dssp             TTEEEEECSS--CTTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETTS
T ss_pred             CCEEEEECCC--CCCCceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCCC
Confidence            7899999953  2446799999987765432        24677777765 6899999988643

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.95  E-value=2.6e-05  Score=38.40  Aligned_cols=53  Identities=26%  Similarity=0.446  Sum_probs=36.5

Q ss_pred             CccEEEEEEeccCC--CCeeEEee--CCccC------C-C---------------------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMK--DGKPV------P-D---------------------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~--~~~~~------~-~---------------------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  ...+.|+|  .++.+      . .                     .+...|.|.+++.+|.+.|
T Consensus        15 G~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~eDtAvY   94 (115)
T d1f3dh1          15 GASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFEDSAVY   94 (115)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcCCcEEE
Confidence            89999999988753  34688987  22211      0 0                     0112488899999999999


Q ss_pred             EEEEE
Q psy12725         50 QCVIR   54 (119)
Q Consensus        50 ~C~~~   54 (119)
                      .|...
T Consensus        95 YCAr~   99 (115)
T d1f3dh1          95 YCAND   99 (115)
T ss_dssp             EEEEC
T ss_pred             EEecc
Confidence            99653

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.94  E-value=3.5e-05  Score=38.18  Aligned_cols=53  Identities=26%  Similarity=0.498  Sum_probs=36.3

Q ss_pred             CccEEEEEEeccCC--CCeeEEee--CCccCC-----------------CC-----------CCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMK--DGKPVP-----------------DH-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~--~~~~~~-----------------~~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      |++|+|.|.+.|..  ...+.|||  .++.+.                 .+           +...|.|.+++.+|.+.|
T Consensus        15 G~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eDsAvY   94 (119)
T d1qnzh_          15 GASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDDSAVY   94 (119)
T ss_dssp             TEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGGCEEE
T ss_pred             CCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccceeEE
Confidence            88999999987653  33588987  222210                 00           112478889999999999


Q ss_pred             EEEEE
Q psy12725         50 QCVIR   54 (119)
Q Consensus        50 ~C~~~   54 (119)
                      .|...
T Consensus        95 YCA~~   99 (119)
T d1qnzh_          95 YCAIH   99 (119)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99654

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=5.7e-05  Score=34.88  Aligned_cols=57  Identities=19%  Similarity=0.376  Sum_probs=40.4

Q ss_pred             CCccEEEEEEeccC-CCCeeEEeeC-Cc---cCCC----------CCC---CeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          1 MLALKFFTCKYEGN-PVKTISWMKD-GK---PVPD----------HNE---PVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         1 ~g~~~~l~c~~~~~-~~~~v~w~~~-~~---~~~~----------~~~---~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      .|+...|.|-+.-- ..|+++|-|- +.   .+..          ..+   ..|.+..+.++|.|.|.|.+....
T Consensus        17 ~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s   91 (104)
T d1xaua_          17 TGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS   91 (104)
T ss_dssp             TTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             cCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCCh
Confidence            38899999998643 4789999873 32   1211          111   357888899999999999987653

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=9.7e-06  Score=39.23  Aligned_cols=56  Identities=25%  Similarity=0.480  Sum_probs=35.3

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC---------CCC------eEEEecCCCCCCeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH---------NEP------VFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~---------~~~------~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      ++.++|.|.+.+. | ...|.|.+||..+...         .+.      .|.+..-.-.....|+|.+.+..
T Consensus        20 ~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1q0xl2          20 TAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEG   92 (102)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETT
T ss_pred             CCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            3568899999876 4 4589999998765321         111      22332222234568999999864

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.86  E-value=7.9e-06  Score=39.13  Aligned_cols=56  Identities=13%  Similarity=0.220  Sum_probs=34.8

Q ss_pred             CccEEEEEEeccC-CC-CeeEEeeCCccCCCC--------CCCe---EEEecCCCCCCeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGN-PV-KTISWMKDGKPVPDH--------NEPV---FRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~-~~-~~v~w~~~~~~~~~~--------~~~~---l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      ++.++|.|.+.+. |. ..+.|++++......        .+.+   .....+...+...|+|.+.+..
T Consensus        16 ~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~s   84 (96)
T d2h26a1          16 PGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVKHSS   84 (96)
T ss_dssp             TTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEGGGCTTEEEEEEEGG
T ss_pred             CCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeCccCCEEEEEEEeCC
Confidence            3578999999886 54 489999988765321        1111   1112223345557999988864

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.86  E-value=1.7e-05  Score=38.25  Aligned_cols=43  Identities=14%  Similarity=0.229  Sum_probs=30.9

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCC--CeEEEEECCEEccc
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPT--PEISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~~~~~~  117 (119)
                      +|.+.+.+.. ....|...+|.|.+.|..+  ..+.|++||..+..
T Consensus         3 pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~   47 (100)
T d1muja1           3 APQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVAD   47 (100)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCS
T ss_pred             CCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccC
Confidence            5666554432 3456788999999999843  37999999987753

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.86  E-value=0.00011  Score=36.12  Aligned_cols=53  Identities=25%  Similarity=0.597  Sum_probs=37.1

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccCC------C---------------------CCCCeEEEecCCCCCCeEEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPVP------D---------------------HNEPVFRIDSVRKEDKGMYQ   50 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~~------~---------------------~~~~~l~~~~~~~~d~g~y~   50 (119)
                      |+++.|.|.+.|..  ...+.|+|.  ++.+.      .                     .+...|.+.+++.+|.+.|.
T Consensus        15 g~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eDtAvYY   94 (117)
T d1c5db1          15 SQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTAIYF   94 (117)
T ss_dssp             TSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCcceEEE
Confidence            88999999998764  346889872  22220      0                     01135888899999999999


Q ss_pred             EEEE
Q psy12725         51 CVIR   54 (119)
Q Consensus        51 C~~~   54 (119)
                      |...
T Consensus        95 CAr~   98 (117)
T d1c5db1          95 CTRE   98 (117)
T ss_dssp             EEEC
T ss_pred             Eecc
Confidence            9543

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=2.7e-06  Score=40.43  Aligned_cols=34  Identities=15%  Similarity=0.296  Sum_probs=28.1

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ...+.+|+++.|.|.+.+ +.|.+.|+++|..+..
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~   39 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKA   39 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCC
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCccccee
Confidence            346789999999999887 6679999999887654

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.85  E-value=4.4e-07  Score=44.80  Aligned_cols=32  Identities=22%  Similarity=0.452  Sum_probs=26.9

Q ss_pred             cccCCCCcEEEEeEE-ccCCCCeEEEEECCEEc
Q psy12725         84 ETLNPGPNYYFKCIA-SGNPTPEISWYLDGKKL  115 (119)
Q Consensus        84 ~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~  115 (119)
                      ..+.+|+.+.|.|.+ .|.|.|.+.|++++..+
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~   44 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGA   44 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEEETTS
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeCCccc
Confidence            356789999999986 79999999999976544

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.83  E-value=0.00012  Score=36.20  Aligned_cols=54  Identities=20%  Similarity=0.437  Sum_probs=37.0

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccCC-------C----------C-----------CCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPVP-------D----------H-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~~-------~----------~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      |++++|.|.+.+..  ...+.|||-  ++.+.       .          +           +...|.|..++.+|.+.|
T Consensus        15 G~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~eDtA~Y   94 (120)
T d1pg7x1          15 GASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSNDSAVY   94 (120)
T ss_dssp             TCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCCcceEE
Confidence            88999999998764  335789872  22110       0          0           112478888999999999


Q ss_pred             EEEEEc
Q psy12725         50 QCVIRN   55 (119)
Q Consensus        50 ~C~~~~   55 (119)
                      .|....
T Consensus        95 YCAr~~  100 (120)
T d1pg7x1          95 YCARED  100 (120)
T ss_dssp             EEEEEC
T ss_pred             EeeecC
Confidence            997653

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=4.7e-06  Score=40.52  Aligned_cols=55  Identities=16%  Similarity=0.378  Sum_probs=35.0

Q ss_pred             ccEEEEEEeccC-CCC-eeEEeeCCccCCCC--------CC------CeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          3 ALKFFTCKYEGN-PVK-TISWMKDGKPVPDH--------NE------PVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         3 ~~~~l~c~~~~~-~~~-~v~w~~~~~~~~~~--------~~------~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      ..++|.|.+.+. |.. .|+|.+++..+...        .+      +.|.+..-.......|+|.+.+..
T Consensus        22 ~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (104)
T d1o0va1          22 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQG   92 (104)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETT
T ss_pred             CeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECC
Confidence            468899999884 543 79999998776431        11      123332222223556999999874

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.83  E-value=4.2e-05  Score=37.86  Aligned_cols=52  Identities=25%  Similarity=0.476  Sum_probs=36.3

Q ss_pred             CccEEEEEEeccCCC--CeeEEeeC--CccCC------C---------------------CCCCeEEEecCCCCCCeEEE
Q psy12725          2 LALKFFTCKYEGNPV--KTISWMKD--GKPVP------D---------------------HNEPVFRIDSVRKEDKGMYQ   50 (119)
Q Consensus         2 g~~~~l~c~~~~~~~--~~v~w~~~--~~~~~------~---------------------~~~~~l~~~~~~~~d~g~y~   50 (119)
                      |+++.|.|.+.|...  -.+.|+|.  ++.+.      .                     .+...|.|.+++.+|.+.|.
T Consensus        15 G~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eDtA~YY   94 (120)
T d1dn0b1          15 SETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTAVYY   94 (120)
T ss_dssp             TSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccccccEEE
Confidence            899999999988643  35789872  22210      0                     01134888899999999999


Q ss_pred             EEE
Q psy12725         51 CVI   53 (119)
Q Consensus        51 C~~   53 (119)
                      |..
T Consensus        95 CAr   97 (120)
T d1dn0b1          95 CAR   97 (120)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            943

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.82  E-value=3.9e-05  Score=36.48  Aligned_cols=56  Identities=18%  Similarity=0.408  Sum_probs=35.3

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC----------CCCe---EEEecCCCCCCeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH----------NEPV---FRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~----------~~~~---l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      ++.++|.|.+.+. | ...+.|.+++..+...          ....   .....+...+...|+|++.+..
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H~~   85 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSG   85 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEETT
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEECC
Confidence            3567899999986 4 5589999998765321          1111   1222233444457999998864

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.82  E-value=3.8e-05  Score=37.08  Aligned_cols=54  Identities=22%  Similarity=0.394  Sum_probs=34.0

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC------C-----------CC-----------CCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV------P-----------DH-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~------~-----------~~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  .-.+.|+|-  ++.+      .           .+           +...|.|.+++.+|.+.|
T Consensus         2 G~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAvY   81 (103)
T d1oari_           2 GASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAVY   81 (103)
T ss_dssp             CCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSEE
T ss_pred             CCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEEE
Confidence            89999999998764  336889862  2221      0           00           112588899999999999


Q ss_pred             EEEEEc
Q psy12725         50 QCVIRN   55 (119)
Q Consensus        50 ~C~~~~   55 (119)
                      .|....
T Consensus        82 YCAr~~   87 (103)
T d1oari_          82 YCARMW   87 (103)
T ss_dssp             EEEEEE
T ss_pred             EeEEEC
Confidence            997544

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=5.1e-05  Score=37.52  Aligned_cols=22  Identities=18%  Similarity=0.425  Sum_probs=19.1

Q ss_pred             CeEEEecCCCCCCeEEEEEEEc
Q psy12725         34 PVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus        34 ~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      ..|.|.+++.+|.|.|.|.+..
T Consensus        77 ~~L~I~~l~~~DsavYyCa~~~   98 (118)
T d1yjdc1          77 VTFYLQNLYVNQTDIYFCKIEV   98 (118)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEE
T ss_pred             EEEEECCCCcccCeEEEEEEec
Confidence            3699999999999999997654

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=7.5e-06  Score=39.72  Aligned_cols=33  Identities=27%  Similarity=0.469  Sum_probs=28.0

Q ss_pred             ccCCCCcEEEEe------EEccCCCCeEEEEECCEEccc
Q psy12725         85 TLNPGPNYYFKC------IASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        85 ~~~~g~~~~l~C------~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      .+..|....|.|      .+.+.|.|.+.|++||+.+..
T Consensus        10 ~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~   48 (103)
T d1iray2          10 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL   48 (103)
T ss_dssp             EEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCC
T ss_pred             EEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccC
Confidence            466788999999      567888999999999999864

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=2.7e-05  Score=37.91  Aligned_cols=58  Identities=14%  Similarity=0.335  Sum_probs=35.5

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCC----------CCCCeE---EEecCCCC---CCeEEEEEEEcCCCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPD----------HNEPVF---RIDSVRKE---DKGMYQCVIRNEQES   59 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~----------~~~~~l---~~~~~~~~---d~g~y~C~~~~~~~~   59 (119)
                      +..++|.|.+.+. | ...|.|.+|+..+..          ..+..+   ....+...   ....|+|.+.+....
T Consensus        20 ~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~   95 (107)
T d1mjul2          20 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST   95 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            4568999999875 4 458999998876532          111111   11222222   355799999986543

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.79  E-value=5.9e-05  Score=37.29  Aligned_cols=54  Identities=26%  Similarity=0.502  Sum_probs=37.3

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC------CC---------------------CCCCeEEEecCCCCCCeEEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV------PD---------------------HNEPVFRIDSVRKEDKGMYQ   50 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~------~~---------------------~~~~~l~~~~~~~~d~g~y~   50 (119)
                      |+++.|.|.+.+..  ...+.|+|.  ++.+      ..                     .+...|.|..++.+|.+.|.
T Consensus        14 g~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eDtA~YY   93 (119)
T d1kxvc_          14 GGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDTAMYY   93 (119)
T ss_dssp             TCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGCEEEE
T ss_pred             CCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCCcceEe
Confidence            89999999998764  335778872  2111      00                     01135888999999999999


Q ss_pred             EEEEc
Q psy12725         51 CVIRN   55 (119)
Q Consensus        51 C~~~~   55 (119)
                      |....
T Consensus        94 CAr~~   98 (119)
T d1kxvc_          94 CKPSL   98 (119)
T ss_dssp             EEEEE
T ss_pred             eeecc
Confidence            97554

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.78  E-value=3.7e-05  Score=37.30  Aligned_cols=53  Identities=21%  Similarity=0.429  Sum_probs=35.3

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC------------------C---------CCCCCeEEEecCCCCCCeEEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV------------------P---------DHNEPVFRIDSVRKEDKGMYQ   50 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~------------------~---------~~~~~~l~~~~~~~~d~g~y~   50 (119)
                      |+++.|.|.+.|..  ...+.|+|.  ++.+                  .         ..+...|.|.+++.+|.+.|.
T Consensus         8 G~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDtAvYy   87 (107)
T d1sjva_           8 GESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTAVYY   87 (107)
T ss_dssp             TCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCSEEE
T ss_pred             CCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccceeee
Confidence            89999999987753  345788872  2211                  0         011235888999999999999


Q ss_pred             EEEE
Q psy12725         51 CVIR   54 (119)
Q Consensus        51 C~~~   54 (119)
                      |...
T Consensus        88 CA~~   91 (107)
T d1sjva_          88 CYTH   91 (107)
T ss_dssp             EEEC
T ss_pred             Eecc
Confidence            9653

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=7.5e-06  Score=39.61  Aligned_cols=56  Identities=21%  Similarity=0.373  Sum_probs=35.0

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC---------CCCe---EEEecCCCC---CCeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH---------NEPV---FRIDSVRKE---DKGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~---------~~~~---l~~~~~~~~---d~g~y~C~~~~~~   57 (119)
                      ++.++|.|.+.+. | ...|.|.+||..+...         .+..   .....+...   ....|+|.+.+..
T Consensus        20 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1rzfl2          20 ANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG   92 (102)
T ss_dssp             TTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETT
T ss_pred             CCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            4568999999885 4 4589999998766431         1111   122223332   2446999998864

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.74  E-value=6.7e-05  Score=37.81  Aligned_cols=54  Identities=24%  Similarity=0.538  Sum_probs=36.8

Q ss_pred             CccEEEEEEeccCCC----CeeEEeeC--CccC------------------CC---------CCCCeEEEecCCCCCCeE
Q psy12725          2 LALKFFTCKYEGNPV----KTISWMKD--GKPV------------------PD---------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         2 g~~~~l~c~~~~~~~----~~v~w~~~--~~~~------------------~~---------~~~~~l~~~~~~~~d~g~   48 (119)
                      |++++|.|.+.|...    .-+.|+|-  ++.+                  +.         .+...|.|.+++.+|.+.
T Consensus        15 g~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~eDtAv   94 (132)
T d1tjgh1          15 TQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPVDTAT   94 (132)
T ss_dssp             TCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCcccceE
Confidence            899999999876532    24789872  2111                  00         011348899999999999


Q ss_pred             EEEEEEc
Q psy12725         49 YQCVIRN   55 (119)
Q Consensus        49 y~C~~~~   55 (119)
                      |.|....
T Consensus        95 YYCAr~~  101 (132)
T d1tjgh1          95 YFCAHRR  101 (132)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            9997654

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.74  E-value=5.3e-05  Score=37.32  Aligned_cols=55  Identities=25%  Similarity=0.589  Sum_probs=38.0

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC-------CC----------C-----------CCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV-------PD----------H-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~-------~~----------~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  .-.+.|+|.  ++.+       ..          +           +...|.|..++.+|.+.|
T Consensus        15 g~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~eDtAvY   94 (117)
T d1iqdb1          15 GASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSDDTAVY   94 (117)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcCcceEE
Confidence            89999999998763  345788872  2211       00          0           112488999999999999


Q ss_pred             EEEEEcC
Q psy12725         50 QCVIRNE   56 (119)
Q Consensus        50 ~C~~~~~   56 (119)
                      .|.....
T Consensus        95 YCA~~~~  101 (117)
T d1iqdb1          95 YCAVPDP  101 (117)
T ss_dssp             EEEECSS
T ss_pred             EEeEcCC
Confidence            9976543

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.74  E-value=4.4e-05  Score=37.42  Aligned_cols=52  Identities=25%  Similarity=0.490  Sum_probs=36.0

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC------C-C----------C-----------CCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV------P-D----------H-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~------~-~----------~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  ...+.|+|-  ++.+      . .          +           +...|.|.+++.+|.+.|
T Consensus        15 G~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~eDtAvY   94 (114)
T d1indh1          15 GGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSEDTALY   94 (114)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccCcccEE
Confidence            89999999998764  345788872  2111      0 0          0           112488899999999999


Q ss_pred             EEEE
Q psy12725         50 QCVI   53 (119)
Q Consensus        50 ~C~~   53 (119)
                      .|..
T Consensus        95 YCA~   98 (114)
T d1indh1          95 FCAS   98 (114)
T ss_dssp             EEEC
T ss_pred             EECC
Confidence            9963

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.72  E-value=7.5e-05  Score=36.79  Aligned_cols=54  Identities=20%  Similarity=0.375  Sum_probs=37.2

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC------C-C---------------------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV------P-D---------------------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~------~-~---------------------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  .-.+.|+|-  ++.+      . .                     .+...|.|.+++.+|.+.|
T Consensus        14 G~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~eDtAvY   93 (117)
T d1um5h1          14 GGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSEDSAVY   93 (117)
T ss_dssp             TCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCCcceEE
Confidence            89999999998764  346788872  2211      0 0                     0112488889999999999


Q ss_pred             EEEEEc
Q psy12725         50 QCVIRN   55 (119)
Q Consensus        50 ~C~~~~   55 (119)
                      .|....
T Consensus        94 YCAr~~   99 (117)
T d1um5h1          94 YCARSS   99 (117)
T ss_dssp             EEEEEE
T ss_pred             EEeecc
Confidence            996543

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.72  E-value=6.6e-05  Score=37.07  Aligned_cols=54  Identities=22%  Similarity=0.458  Sum_probs=36.9

Q ss_pred             CccEEEEEEeccCCCC---eeEEee--CCccCC------------------C---------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNPVK---TISWMK--DGKPVP------------------D---------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~---~v~w~~--~~~~~~------------------~---------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|....   .+.|+|  .++.+.                  .         .+...|.+.+++.+|.+.|
T Consensus        15 g~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~eDTAvY   94 (119)
T d1ncwh1          15 SQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTEDTATY   94 (119)
T ss_dssp             TSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccCCceEE
Confidence            8899999999887542   367886  222210                  0         1123578888999999999


Q ss_pred             EEEEEc
Q psy12725         50 QCVIRN   55 (119)
Q Consensus        50 ~C~~~~   55 (119)
                      +|....
T Consensus        95 YCAr~~  100 (119)
T d1ncwh1          95 YCAGLL  100 (119)
T ss_dssp             EEEEEE
T ss_pred             EEeEec
Confidence            996543

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=2.3e-05  Score=36.03  Aligned_cols=49  Identities=20%  Similarity=0.319  Sum_probs=34.2

Q ss_pred             CccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEE
Q psy12725          2 LALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      |+.|.|.|-...  .-.|.|.+++..-....+..+++.--...|+|+|+|.
T Consensus        21 ~~~V~L~C~t~e--E~~I~W~kd~~se~~~~GntltV~VkE~~~aGnYTCh   69 (87)
T d3d85d1          21 GEMVVLTCDTPE--EDGITWTLDQSSEVLGSGKTLTIQVKEFGDAGQYTCH   69 (87)
T ss_dssp             CEEEEEECSSSC--CSSCEEEETTCCCCCEESSEEEEEECSGGGCEEEEEE
T ss_pred             ccEEEEecCCCc--ccccEEeeCCccccccCCCEEEEEEEeccCCcceeEe
Confidence            567889885432  2369999997764445566777754444789999996

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.71  E-value=5.9e-05  Score=37.36  Aligned_cols=53  Identities=26%  Similarity=0.443  Sum_probs=36.2

Q ss_pred             CccEEEEEEeccCCC--C--eeEEeeC--CccCC------C---------------------CCCCeEEEecCCCCCCeE
Q psy12725          2 LALKFFTCKYEGNPV--K--TISWMKD--GKPVP------D---------------------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         2 g~~~~l~c~~~~~~~--~--~v~w~~~--~~~~~------~---------------------~~~~~l~~~~~~~~d~g~   48 (119)
                      |+++.|.|.+.|...  .  .+.|+|-  ++.+.      .                     .+...|.|..++.+|.+.
T Consensus        15 g~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~eDtAv   94 (120)
T d1ai1h1          15 SQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNEDTAM   94 (120)
T ss_dssp             SSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGGGCEE
T ss_pred             CCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeeccceeE
Confidence            899999999987532  2  4679872  22210      0                     011358888999999999


Q ss_pred             EEEEEE
Q psy12725         49 YQCVIR   54 (119)
Q Consensus        49 y~C~~~   54 (119)
                      |.|...
T Consensus        95 YYCAr~  100 (120)
T d1ai1h1          95 YYCSRE  100 (120)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            999654

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=8.4e-05  Score=36.11  Aligned_cols=57  Identities=12%  Similarity=0.316  Sum_probs=35.1

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCC----------CCCC------eEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPD----------HNEP------VFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~----------~~~~------~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      ++.++|.|.+.+. | ...|.|.+|+.....          ..+.      .|.+..-.-.....|+|.+.+...
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~   94 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGL   94 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCC
Confidence            3568999999886 4 458999998865532          1111      222322221334479999998653

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.70  E-value=9.9e-05  Score=35.87  Aligned_cols=59  Identities=20%  Similarity=0.332  Sum_probs=36.3

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC---------CC--CeEEEecCCCCC-CeEEEEEEEcCCCCc
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH---------NE--PVFRIDSVRKED-KGMYQCVIRNEQESA   60 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~---------~~--~~l~~~~~~~~d-~g~y~C~~~~~~~~~   60 (119)
                      ++.++|.|.+.+. | ...|.|.+++..+...         .+  .......+...+ ...|+|.+.+.....
T Consensus        24 ~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w~~~ytC~V~H~s~~~   96 (107)
T d1hxmb2          24 QKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSLDKEHRCIVRHENNKN   96 (107)
T ss_dssp             SSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGGGSCEEEEEEETTSGG
T ss_pred             CCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccCCCeEEEEEEECCCCC
Confidence            4678999999886 4 4479999998765431         11  111122233333 336999999875433

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=6.9e-05  Score=36.02  Aligned_cols=43  Identities=19%  Similarity=0.406  Sum_probs=30.8

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCCC--eEEEEECCEEccc
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPTP--EISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~  117 (119)
                      +|.+.+.+. .....|...+|.|.+.|..+.  .+.|++||..+..
T Consensus         5 ~P~V~v~~~-~~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~   49 (100)
T d1k5nb_           5 TPKIQVYSR-HPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK   49 (100)
T ss_dssp             CCEEEEEES-SCCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTT
T ss_pred             CCeeEEEcC-CcccCCCCEEEEEEECccCCCCcEEEEEECCEecCC
Confidence            455555322 234578889999999998433  7999999998854

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.70  E-value=9.4e-05  Score=36.99  Aligned_cols=53  Identities=25%  Similarity=0.555  Sum_probs=35.5

Q ss_pred             CccEEEEEEeccCC--CC--eeEEee--CCccCC----------------C-----------CCCCeEEEecCCCCCCeE
Q psy12725          2 LALKFFTCKYEGNP--VK--TISWMK--DGKPVP----------------D-----------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~--~v~w~~--~~~~~~----------------~-----------~~~~~l~~~~~~~~d~g~   48 (119)
                      |++++|.|.+.|..  ..  .+.|+|  .++.+.                .           .+...|.|.+++.+|.+.
T Consensus        15 g~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~eDtAv   94 (126)
T d1etzb1          15 SQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTSDTAT   94 (126)
T ss_dssp             TCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccccccce
Confidence            89999999987653  22  456886  222210                0           011358899999999999


Q ss_pred             EEEEEE
Q psy12725         49 YQCVIR   54 (119)
Q Consensus        49 y~C~~~   54 (119)
                      |.|...
T Consensus        95 YyCAr~  100 (126)
T d1etzb1          95 YHCARR  100 (126)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999743

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.69  E-value=5.5e-05  Score=37.65  Aligned_cols=53  Identities=21%  Similarity=0.502  Sum_probs=35.6

Q ss_pred             CccEEEEEEeccCC--CC--eeEEee--CCccCC------C---------------------CCCCeEEEecCCCCCCeE
Q psy12725          2 LALKFFTCKYEGNP--VK--TISWMK--DGKPVP------D---------------------HNEPVFRIDSVRKEDKGM   48 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~--~v~w~~--~~~~~~------~---------------------~~~~~l~~~~~~~~d~g~   48 (119)
                      |++++|.|.+.|..  ..  .+.|+|  .++.+.      .                     .+...|.|..++.+|.+.
T Consensus        15 g~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~eDsAv   94 (123)
T d1r0ah1          15 SQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETADTAI   94 (123)
T ss_dssp             TCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCEE
T ss_pred             CCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecccccceE
Confidence            89999999987653  22  467986  222210      0                     011348888999999999


Q ss_pred             EEEEEE
Q psy12725         49 YQCVIR   54 (119)
Q Consensus        49 y~C~~~   54 (119)
                      |.|...
T Consensus        95 YyCAr~  100 (123)
T d1r0ah1          95 YYCAQS  100 (123)
T ss_dssp             EEEEEE
T ss_pred             Eeeccc
Confidence            999743

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.2e-05  Score=39.25  Aligned_cols=28  Identities=25%  Similarity=0.557  Sum_probs=22.4

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVP   29 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~   29 (119)
                      |+.++|.|.+.+. | ...|.|++|+..+.
T Consensus        20 ~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~   49 (108)
T d1ow0a2          20 NELVTLTCLARGFSPKDVLVRWLQGSQELP   49 (108)
T ss_dssp             SSEEEEEEEEEEESSSCCEEEEEETTEECC
T ss_pred             CCceEEEEEEEEeECCCEEEEEEECCeEcC
Confidence            5789999999885 4 44899999987653

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.68  E-value=8.9e-05  Score=36.48  Aligned_cols=53  Identities=19%  Similarity=0.407  Sum_probs=36.4

Q ss_pred             CccEEEEEEeccCC--CCeeEEee--CCccCC-----------------CC-----------CCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMK--DGKPVP-----------------DH-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~--~~~~~~-----------------~~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  .-.+.|+|  .++.+.                 .+           +...|.|.+++.+|.+.|
T Consensus        15 g~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~eDTAvY   94 (117)
T d1jnhb1          15 GASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSEDSAVY   94 (117)
T ss_dssp             TCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCCcceEE
Confidence            88999999998864  33578887  221110                 00           112478889999999999


Q ss_pred             EEEEE
Q psy12725         50 QCVIR   54 (119)
Q Consensus        50 ~C~~~   54 (119)
                      .|...
T Consensus        95 YCAr~   99 (117)
T d1jnhb1          95 SCSRG   99 (117)
T ss_dssp             EEEEE
T ss_pred             EEeec
Confidence            99653

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.68  E-value=0.00053  Score=34.45  Aligned_cols=54  Identities=20%  Similarity=0.451  Sum_probs=37.3

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC------C-C---------------------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV------P-D---------------------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~------~-~---------------------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  ...+.|+|-  ++.+      . .                     .+...|.|.+++.+|.+.|
T Consensus        15 G~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~eDTAvY   94 (135)
T d1ieha_          15 GGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSEDTAVY   94 (135)
T ss_dssp             TCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSSSCEEE
T ss_pred             CCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcccceee
Confidence            88999999998764  345788862  2211      0 0                     0123578889999999999


Q ss_pred             EEEEEc
Q psy12725         50 QCVIRN   55 (119)
Q Consensus        50 ~C~~~~   55 (119)
                      +|....
T Consensus        95 YCAr~~  100 (135)
T d1ieha_          95 YCAKYS  100 (135)
T ss_dssp             EEEEBS
T ss_pred             EEEEec
Confidence            996543

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.68  E-value=7.2e-05  Score=36.01  Aligned_cols=43  Identities=16%  Similarity=0.420  Sum_probs=30.2

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~  117 (119)
                      +|.+.+.+.. .+..|+..+|.|.+.+. |.. .+.|++||+.+..
T Consensus         5 ~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~   49 (101)
T d1fnga1           5 APEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTE   49 (101)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECS
T ss_pred             CCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCC
Confidence            5555553322 34556788999999987 433 7999999998764

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.67  E-value=6.8e-05  Score=36.87  Aligned_cols=54  Identities=19%  Similarity=0.453  Sum_probs=37.7

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccCC------C---------------------CCCCeEEEecCCCCCCeEEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPVP------D---------------------HNEPVFRIDSVRKEDKGMYQ   50 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~~------~---------------------~~~~~l~~~~~~~~d~g~y~   50 (119)
                      |+++.|.|.+.|..  .-.+.|+|.  ++.+.      .                     .+...|.+.+++.+|.+.|+
T Consensus        15 g~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eDTAvYY   94 (116)
T d1a2yb_          15 SQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTARYY   94 (116)
T ss_dssp             TSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCEEEE
T ss_pred             CCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeeccceEEE
Confidence            89999999998764  335778872  22210      0                     01135889999999999999


Q ss_pred             EEEEc
Q psy12725         51 CVIRN   55 (119)
Q Consensus        51 C~~~~   55 (119)
                      |.-..
T Consensus        95 CAr~~   99 (116)
T d1a2yb_          95 CARER   99 (116)
T ss_dssp             EEEES
T ss_pred             EEEeC
Confidence            97543

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.66  E-value=0.00012  Score=36.22  Aligned_cols=53  Identities=23%  Similarity=0.462  Sum_probs=36.2

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccCC-------C---------------------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPVP-------D---------------------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~~-------~---------------------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  ...+.|+|.  ++.+.       .                     .+...|.|.+++.+|.+.|
T Consensus        15 g~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~eDtAvY   94 (121)
T d2p49b1          15 GGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPEDTATY   94 (121)
T ss_dssp             TCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGGGCEEE
T ss_pred             CCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccccceeEE
Confidence            88999999998764  345788872  22110       0                     0112478888999999999


Q ss_pred             EEEEE
Q psy12725         50 QCVIR   54 (119)
Q Consensus        50 ~C~~~   54 (119)
                      +|...
T Consensus        95 YCAr~   99 (121)
T d2p49b1          95 YCAAG   99 (121)
T ss_dssp             EEEES
T ss_pred             eeecc
Confidence            99753

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.66  E-value=0.00016  Score=35.61  Aligned_cols=52  Identities=23%  Similarity=0.496  Sum_probs=35.9

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC------C-C----------C-----------CCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV------P-D----------H-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~------~-~----------~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  ...+.|+|.  ++.+      . .          +           +...|.+.+++.+|.+.|
T Consensus        15 G~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~eDtAvY   94 (118)
T d1nlbh1          15 GETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNEDTATY   94 (118)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccCcceEE
Confidence            88999999998764  345889872  2211      0 0          0           112478889999999999


Q ss_pred             EEEE
Q psy12725         50 QCVI   53 (119)
Q Consensus        50 ~C~~   53 (119)
                      .|..
T Consensus        95 YCAr   98 (118)
T d1nlbh1          95 FCAR   98 (118)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            9953

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.65  E-value=0.00018  Score=35.71  Aligned_cols=54  Identities=26%  Similarity=0.484  Sum_probs=37.0

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC------C-C----------C-----------CCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV------P-D----------H-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~------~-~----------~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  .-.+.|+|-  ++.+      . .          +           +...|.|.+++.+|.+.|
T Consensus        15 G~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~eDtAvY   94 (123)
T d1mqkh_          15 GGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSEDTAMY   94 (123)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccCcccce
Confidence            89999999998764  335788872  2211      0 0          0           112478889999999999


Q ss_pred             EEEEEc
Q psy12725         50 QCVIRN   55 (119)
Q Consensus        50 ~C~~~~   55 (119)
                      +|....
T Consensus        95 YCAr~~  100 (123)
T d1mqkh_          95 YCVRHE  100 (123)
T ss_dssp             EEEEEE
T ss_pred             eEEecC
Confidence            997554

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.65  E-value=3.8e-05  Score=36.82  Aligned_cols=55  Identities=16%  Similarity=0.169  Sum_probs=34.9

Q ss_pred             ccEEEEEEeccC-C-CCeeEEeeCCccCCC-------------CCCCe---EEEecCCCCCCeEEEEEEEcCC
Q psy12725          3 ALKFFTCKYEGN-P-VKTISWMKDGKPVPD-------------HNEPV---FRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         3 ~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~-------------~~~~~---l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      ..++|.|.+.+. | ...|.|.+|+..+..             ....+   .....+...+...|+|.+.+..
T Consensus        15 ~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s   87 (98)
T d1u58a1          15 GGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKGIA   87 (98)
T ss_dssp             SCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEEEGG
T ss_pred             CcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            468899999987 4 458999998765421             01111   1222344455567999998754

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=4.6e-05  Score=36.16  Aligned_cols=33  Identities=21%  Similarity=0.327  Sum_probs=25.9

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCCCeEE
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPTPEIS  107 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~  107 (119)
                      .|.+. .+.+..+..|+.+.|.|.+.|.|.|.+.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~   34 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDR   34 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEE
Confidence            46665 3667788999999999999999877543

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.64  E-value=0.00011  Score=35.19  Aligned_cols=43  Identities=21%  Similarity=0.440  Sum_probs=30.0

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCC--CeEEEEECCEEccc
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPT--PEISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~~~~~~~  117 (119)
                      +|.+.+.+.. ....++.++|.|.+.+..+  ..+.|++||..+..
T Consensus         3 PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~   47 (98)
T d1hdmb1           3 PPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMH   47 (98)
T ss_dssp             CCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCC
T ss_pred             CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccC
Confidence            4555543322 2455678999999999833  37999999998753

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.63  E-value=8.8e-05  Score=36.76  Aligned_cols=53  Identities=25%  Similarity=0.493  Sum_probs=36.7

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC------C-C---------------------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV------P-D---------------------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~------~-~---------------------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  .-.+.|+|.  ++.+      . .                     .+...|.|.+++.+|.+.|
T Consensus        15 g~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~eDtAvY   94 (121)
T d1ol0a_          15 GGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAEDTAVY   94 (121)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccccceEE
Confidence            89999999998764  335788862  2221      0 0                     0113588889999999999


Q ss_pred             EEEEE
Q psy12725         50 QCVIR   54 (119)
Q Consensus        50 ~C~~~   54 (119)
                      .|...
T Consensus        95 YCAr~   99 (121)
T d1ol0a_          95 YCARE   99 (121)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99654

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.63  E-value=8e-05  Score=36.68  Aligned_cols=52  Identities=23%  Similarity=0.395  Sum_probs=35.6

Q ss_pred             CccEEEEEEeccCC--CCeeEEee--CCccC------C-----------CC-----------CCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMK--DGKPV------P-----------DH-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~--~~~~~------~-----------~~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  ..-+.|+|  .++.+      .           .+           +...|.|..++.+|.+.|
T Consensus        15 G~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~eDtAvY   94 (117)
T d1mfah1          15 GASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSEDSAVY   94 (117)
T ss_dssp             TCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCCCcceEE
Confidence            88999999998764  33577886  22211      0           00           112478888999999999


Q ss_pred             EEEE
Q psy12725         50 QCVI   53 (119)
Q Consensus        50 ~C~~   53 (119)
                      .|.-
T Consensus        95 YCAr   98 (117)
T d1mfah1          95 YCTR   98 (117)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            9964

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.63  E-value=8.2e-05  Score=36.15  Aligned_cols=54  Identities=20%  Similarity=0.511  Sum_probs=36.6

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccCC-------------------CC-----------CCCeEEEecCCCCCCe
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPVP-------------------DH-----------NEPVFRIDSVRKEDKG   47 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~~-------------------~~-----------~~~~l~~~~~~~~d~g   47 (119)
                      |+++.|+|.+.|..  .--+.|+|-  ++.+.                   .+           +...|.|.+++.+|.+
T Consensus        15 G~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~~eDTA   94 (109)
T d2ck0h1          15 RGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLKTEDTG   94 (109)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             CCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCCHhHCE
Confidence            89999999998764  336788862  21110                   00           1134788899999999


Q ss_pred             EEEEEEEc
Q psy12725         48 MYQCVIRN   55 (119)
Q Consensus        48 ~y~C~~~~   55 (119)
                      .|.|.-..
T Consensus        95 vYYCAr~~  102 (109)
T d2ck0h1          95 IYYCVRGR  102 (109)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEcC
Confidence            99997543

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=1.6e-05  Score=39.04  Aligned_cols=44  Identities=23%  Similarity=0.459  Sum_probs=33.1

Q ss_pred             CCCeeeecCCccccCCCCcEEEEeEEccCC-CCeEEEEECCEEccc
Q psy12725         73 DPPVIKESFSDETLNPGPNYYFKCIASGNP-TPEISWYLDGKKLVN  117 (119)
Q Consensus        73 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~~~~~~~  117 (119)
                      .||.+.. +....+.+|+.+.|.|.+.+.+ .+.+.|++++..+..
T Consensus         6 ~Pp~i~~-~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~   50 (115)
T d2crya1           6 GPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLES   50 (115)
T ss_dssp             SSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECS
T ss_pred             cCCEEec-CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEee
Confidence            4566543 4455678999999999998864 557999999887753

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=7e-05  Score=35.63  Aligned_cols=30  Identities=30%  Similarity=0.586  Sum_probs=24.9

Q ss_pred             CCCcEEEEeEEcc-CCCCeEEEEECCEEccc
Q psy12725         88 PGPNYYFKCIASG-NPTPEISWYLDGKKLVN  117 (119)
Q Consensus        88 ~g~~~~l~C~~~~-~p~~~~~W~~~~~~~~~  117 (119)
                      .++.+.|.|.+.| .|.+.+.|+++|..+..
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~   45 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNA   45 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECC
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecc
Confidence            5677899999987 48789999999987754

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.62  E-value=8.8e-05  Score=36.92  Aligned_cols=53  Identities=26%  Similarity=0.585  Sum_probs=37.0

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccCC-------C----------C-----------CCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPVP-------D----------H-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~~-------~----------~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  ...+.|+|-  ++.+.       .          +           +...|.+..++.+|.+.|
T Consensus        14 g~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~eDtAvY   93 (124)
T d1zvya1          14 GGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSEDTAIY   93 (124)
T ss_dssp             TCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCCcceEE
Confidence            89999999998764  446889872  22210       0          0           113478888999999999


Q ss_pred             EEEEE
Q psy12725         50 QCVIR   54 (119)
Q Consensus        50 ~C~~~   54 (119)
                      .|...
T Consensus        94 YCAr~   98 (124)
T d1zvya1          94 TCGAT   98 (124)
T ss_dssp             EEEEC
T ss_pred             EEeec
Confidence            99754

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.61  E-value=6.6e-05  Score=36.93  Aligned_cols=54  Identities=22%  Similarity=0.484  Sum_probs=37.3

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC------C-C----------C-----------CCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV------P-D----------H-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~------~-~----------~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  .-.+.|+|.  ++.+      . .          +           +...|.+.+++.+|.+.|
T Consensus        15 g~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~eDTAvY   94 (117)
T d1jpth1          15 GGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAEDTAVY   94 (117)
T ss_dssp             TCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCCCceEE
Confidence            89999999998864  346888872  2211      0 0          0           113478889999999999


Q ss_pred             EEEEEc
Q psy12725         50 QCVIRN   55 (119)
Q Consensus        50 ~C~~~~   55 (119)
                      +|....
T Consensus        95 YCAr~~  100 (117)
T d1jpth1          95 YCARDT  100 (117)
T ss_dssp             EEEEEC
T ss_pred             EEeecC
Confidence            996543

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.61  E-value=7.7e-05  Score=37.02  Aligned_cols=54  Identities=20%  Similarity=0.380  Sum_probs=36.9

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccCC-------C----------C-----------CCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPVP-------D----------H-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~~-------~----------~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      |+.+.|.|.+.|..  ...+.|+|-  ++.+.       .          +           +...|.|.+++.+|.+.|
T Consensus        15 G~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~eDtAvY   94 (121)
T d1j05b_          15 GASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVY   94 (121)
T ss_dssp             TCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcCcceEE
Confidence            89999999987754  345789872  22210       0          0           112478889999999999


Q ss_pred             EEEEEc
Q psy12725         50 QCVIRN   55 (119)
Q Consensus        50 ~C~~~~   55 (119)
                      .|....
T Consensus        95 YCAr~~  100 (121)
T d1j05b_          95 YCAPFG  100 (121)
T ss_dssp             EEEEEB
T ss_pred             EeEeec
Confidence            997543

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.61  E-value=9.9e-05  Score=36.83  Aligned_cols=54  Identities=24%  Similarity=0.460  Sum_probs=36.8

Q ss_pred             CccEEEEEEeccCC--CCeeEEee--CCccC-------------------CC---------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMK--DGKPV-------------------PD---------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~--~~~~~-------------------~~---------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  .-.+.|+|  .++.+                   ..         .+...|.|.+++.+|.+.|
T Consensus        15 g~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~eDtAvY   94 (125)
T d1rihh1          15 GASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSEDSAVY   94 (125)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCcccceEE
Confidence            89999999998764  33578886  22211                   00         0112477888999999999


Q ss_pred             EEEEEc
Q psy12725         50 QCVIRN   55 (119)
Q Consensus        50 ~C~~~~   55 (119)
                      .|....
T Consensus        95 YCAR~~  100 (125)
T d1rihh1          95 YCARES  100 (125)
T ss_dssp             EEEEEC
T ss_pred             EEeeeC
Confidence            997553

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.61  E-value=8.4e-05  Score=36.72  Aligned_cols=53  Identities=25%  Similarity=0.484  Sum_probs=36.5

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC------C-C---------------------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV------P-D---------------------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~------~-~---------------------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  .-.+.|+|-  ++.+      . .                     .+...|.|..++.+|.+.|
T Consensus        15 g~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~eDTAvY   94 (119)
T d1rz7h1          15 GATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSEDTAVY   94 (119)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCcccceEE
Confidence            88999999998864  335788862  2111      0 0                     0112478889999999999


Q ss_pred             EEEEE
Q psy12725         50 QCVIR   54 (119)
Q Consensus        50 ~C~~~   54 (119)
                      +|...
T Consensus        95 YCAr~   99 (119)
T d1rz7h1          95 YCAAD   99 (119)
T ss_dssp             EEEEC
T ss_pred             EEeec
Confidence            99654

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=0.0001  Score=35.73  Aligned_cols=31  Identities=13%  Similarity=0.379  Sum_probs=24.1

Q ss_pred             CCCCcEEEEeEEccC-CC-CeEEEEECCEEccc
Q psy12725         87 NPGPNYYFKCIASGN-PT-PEISWYLDGKKLVN  117 (119)
Q Consensus        87 ~~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~~  117 (119)
                      ..++.++|.|.+.+. |. ..+.|++||..+..
T Consensus        17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~   49 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPD   49 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCG
T ss_pred             hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCC
Confidence            346689999999886 43 38999999998754

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.60  E-value=6.1e-06  Score=40.10  Aligned_cols=58  Identities=16%  Similarity=0.351  Sum_probs=35.3

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC--------CCCeE-EEecCC-----CCCCeEEEEEEEcCCCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH--------NEPVF-RIDSVR-----KEDKGMYQCVIRNEQES   59 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~--------~~~~l-~~~~~~-----~~d~g~y~C~~~~~~~~   59 (119)
                      ++.++|.|.+.+. | ...|.|.+|+..+...        .+... ....++     -.+...|+|.+.+....
T Consensus        20 ~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~   93 (104)
T d1nfde2          20 TNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET   93 (104)
T ss_dssp             TTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             CCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCc
Confidence            3567899999885 4 4589999998765421        11111 111222     12345799999987543

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.60  E-value=0.00012  Score=36.22  Aligned_cols=54  Identities=22%  Similarity=0.463  Sum_probs=37.0

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC------C-C----------C-----------CCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV------P-D----------H-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~------~-~----------~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  .--+.|+|.  ++.+      . .          +           +...|.|.+++.+|.+.|
T Consensus        16 g~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~eDtA~Y   95 (122)
T d1vgeh1          16 GASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPEDTAVY   95 (122)
T ss_dssp             TCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCCCcceEE
Confidence            88999999998764  335788872  2111      0 0          0           112478888999999999


Q ss_pred             EEEEEc
Q psy12725         50 QCVIRN   55 (119)
Q Consensus        50 ~C~~~~   55 (119)
                      .|....
T Consensus        96 YCAr~~  101 (122)
T d1vgeh1          96 YCARDP  101 (122)
T ss_dssp             EEEEET
T ss_pred             EEeecC
Confidence            997653

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=1.9e-05  Score=38.10  Aligned_cols=56  Identities=20%  Similarity=0.468  Sum_probs=35.3

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC--------CCC------eEEEecCCCCCCeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH--------NEP------VFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~--------~~~------~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      ++.++|.|.+.+. | ...+.|.+++......        .+.      .|.+..-.......|+|.+.+..
T Consensus        19 ~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          19 KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            4678999999885 4 4589999998754321        111      23332222223456999999864

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=9.1e-05  Score=35.23  Aligned_cols=54  Identities=15%  Similarity=0.213  Sum_probs=40.6

Q ss_pred             CccEEEEEEeccCCCCeeEEee-CCccCCC-------CCCCeEEEecCCCCCCeEEEEEEEcC
Q psy12725          2 LALKFFTCKYEGNPVKTISWMK-DGKPVPD-------HNEPVFRIDSVRKEDKGMYQCVIRNE   56 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~~v~w~~-~~~~~~~-------~~~~~l~~~~~~~~d~g~y~C~~~~~   56 (119)
                      |+.+.+.|.++. |..+++.++ ++..+..       ..+..+.|.+++..+.|.|.|.+...
T Consensus        20 g~~~vIPC~vT~-P~~~VtL~~~~~~~~~p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          20 GRELVIPCRVTS-PNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             TSCEEECCCBSC-TTSCCEEEETTTEEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEEccCCC-CCceeEEEeccCCccCCCCCEEEECCCCCEEEeCCCcccCeEEEEEEEEC
Confidence            788999999974 777776655 4443321       23567899999999999999999765

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.59  E-value=0.00012  Score=36.49  Aligned_cols=53  Identities=25%  Similarity=0.515  Sum_probs=36.9

Q ss_pred             CccEEEEEEeccCCC---CeeEEee--CCccC------------------CC---------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNPV---KTISWMK--DGKPV------------------PD---------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~~---~~v~w~~--~~~~~------------------~~---------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|...   ..+.|+|  .++.+                  ..         .+...|.|..++.+|.+.|
T Consensus        15 g~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~eDtAvY   94 (127)
T d3cx5j1          15 SQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTEDTATY   94 (127)
T ss_dssp             TSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccccceEE
Confidence            899999999987643   3578987  22221                  00         0113588889999999999


Q ss_pred             EEEEE
Q psy12725         50 QCVIR   54 (119)
Q Consensus        50 ~C~~~   54 (119)
                      +|...
T Consensus        95 yCAr~   99 (127)
T d3cx5j1          95 YCARS   99 (127)
T ss_dssp             EEEEE
T ss_pred             Eeeee
Confidence            99743

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.58  E-value=0.00018  Score=35.45  Aligned_cols=52  Identities=19%  Similarity=0.413  Sum_probs=36.0

Q ss_pred             CccEEEEEEeccCC--CCeeEEee--CCccC------C-C----------C-----------CCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMK--DGKPV------P-D----------H-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~--~~~~~------~-~----------~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  .-.+.|+|  .++.+      . .          +           +...|.+.+++.+|.+.|
T Consensus        15 g~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~eDTAvY   94 (118)
T d2jelh1          15 GVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSEDSAIY   94 (118)
T ss_dssp             TCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccccCcceee
Confidence            89999999998765  33588887  22211      0 0          0           112478888999999999


Q ss_pred             EEEE
Q psy12725         50 QCVI   53 (119)
Q Consensus        50 ~C~~   53 (119)
                      .|..
T Consensus        95 YCAr   98 (118)
T d2jelh1          95 YCAR   98 (118)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            9954

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.58  E-value=0.00015  Score=36.29  Aligned_cols=54  Identities=17%  Similarity=0.445  Sum_probs=37.2

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccCC-------------------C---------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPVP-------------------D---------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~~-------------------~---------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  .-.+.|+|.  ++.+.                   .         .+...|.+..++.+|.+.|
T Consensus        14 g~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDtAvY   93 (130)
T d1rhhb1          14 GSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSDDTAVY   93 (130)
T ss_dssp             TCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCCCcEEE
Confidence            89999999998764  335788872  22110                   0         0113478888999999999


Q ss_pred             EEEEEc
Q psy12725         50 QCVIRN   55 (119)
Q Consensus        50 ~C~~~~   55 (119)
                      .|....
T Consensus        94 yCAr~~   99 (130)
T d1rhhb1          94 YCARDF   99 (130)
T ss_dssp             EEEEEC
T ss_pred             EEEeec
Confidence            997653

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.56  E-value=0.00015  Score=36.13  Aligned_cols=54  Identities=22%  Similarity=0.525  Sum_probs=37.1

Q ss_pred             CccEEEEEEeccCC--CCeeEEee--CCccC-------------------CC---------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMK--DGKPV-------------------PD---------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~--~~~~~-------------------~~---------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  .-.+.|+|  .++.+                   ..         .+...|.+.+++.+|.+.|
T Consensus        15 g~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~eDTavY   94 (127)
T d2fx7h1          15 GSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPEDTAVY   94 (127)
T ss_dssp             TCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCcccceEE
Confidence            89999999998764  33578886  22211                   00         0113478889999999999


Q ss_pred             EEEEEc
Q psy12725         50 QCVIRN   55 (119)
Q Consensus        50 ~C~~~~   55 (119)
                      .|.-..
T Consensus        95 YCAR~~  100 (127)
T d2fx7h1          95 YCAREG  100 (127)
T ss_dssp             EEEEEE
T ss_pred             EEeecc
Confidence            997543

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00022  Score=34.49  Aligned_cols=57  Identities=12%  Similarity=0.144  Sum_probs=34.7

Q ss_pred             ccEEEEEEeccC-C-CCeeEEeeCCccCCCC--------CC------CeEEEecCCCC--CCeEEEEEEEcCCCC
Q psy12725          3 ALKFFTCKYEGN-P-VKTISWMKDGKPVPDH--------NE------PVFRIDSVRKE--DKGMYQCVIRNEQES   59 (119)
Q Consensus         3 ~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~--------~~------~~l~~~~~~~~--d~g~y~C~~~~~~~~   59 (119)
                      +.++|.|.+.+. | ...|+|.+++......        .+      +.|.+....-.  ....|+|.+.+....
T Consensus        22 ~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~   96 (105)
T d1dn0b2          22 SSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN   96 (105)
T ss_dssp             CSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred             CceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCC
Confidence            568899999986 5 4689999987654221        11      12333222211  123799999987543

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.56  E-value=0.00022  Score=35.13  Aligned_cols=55  Identities=25%  Similarity=0.459  Sum_probs=37.6

Q ss_pred             CccEEEEEEeccCCC--CeeEEeeC--CccC------C-C----------C-----------CCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNPV--KTISWMKD--GKPV------P-D----------H-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~~--~~v~w~~~--~~~~------~-~----------~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|...  -.+.|+|.  ++.+      . .          +           +...|.|.+++.+|.+.|
T Consensus        15 g~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDtAvY   94 (118)
T d2fbjh1          15 GGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSEDTALY   94 (118)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCCcceEE
Confidence            899999999988653  35788862  2211      0 0          0           112478889999999999


Q ss_pred             EEEEEcC
Q psy12725         50 QCVIRNE   56 (119)
Q Consensus        50 ~C~~~~~   56 (119)
                      .|.....
T Consensus        95 YCAr~~~  101 (118)
T d2fbjh1          95 YCARLHY  101 (118)
T ss_dssp             EEEEEET
T ss_pred             EeeEecC
Confidence            9976543

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.55  E-value=0.00018  Score=35.40  Aligned_cols=54  Identities=19%  Similarity=0.390  Sum_probs=37.3

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC------CC---------------------CCCCeEEEecCCCCCCeEEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV------PD---------------------HNEPVFRIDSVRKEDKGMYQ   50 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~------~~---------------------~~~~~l~~~~~~~~d~g~y~   50 (119)
                      |+++.|.|.+.|..  .-.+.|+|.  ++.+      ..                     .+...|.|..++.+|.+.|.
T Consensus        15 G~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eDtA~Yy   94 (118)
T d1lo4h1          15 GGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDTAIYY   94 (118)
T ss_dssp             TCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCcceEEE
Confidence            89999999998874  346789872  2111      00                     01135788899999999999


Q ss_pred             EEEEc
Q psy12725         51 CVIRN   55 (119)
Q Consensus        51 C~~~~   55 (119)
                      |.-..
T Consensus        95 CAr~~   99 (118)
T d1lo4h1          95 CARGT   99 (118)
T ss_dssp             EEEEE
T ss_pred             ecccC
Confidence            96543

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.55  E-value=0.00047  Score=33.95  Aligned_cols=54  Identities=24%  Similarity=0.451  Sum_probs=36.8

Q ss_pred             CccEEEEEEeccCC--CCeeEEee--CCccC------CC-----------C-----------CCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMK--DGKPV------PD-----------H-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~--~~~~~------~~-----------~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  .-.+.|+|  .++.+      ..           +           +...|.|.+++.+|.+.|
T Consensus        15 g~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~eDtAvY   94 (118)
T d1ct8b1          15 GASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTEDSAIY   94 (118)
T ss_dssp             TCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCCcceEE
Confidence            89999999998764  34678886  22211      00           0           113477888999999999


Q ss_pred             EEEEEc
Q psy12725         50 QCVIRN   55 (119)
Q Consensus        50 ~C~~~~   55 (119)
                      +|....
T Consensus        95 YCAr~~  100 (118)
T d1ct8b1          95 YCARYR  100 (118)
T ss_dssp             EEEEEC
T ss_pred             EEeeec
Confidence            996543

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.55  E-value=0.00015  Score=35.58  Aligned_cols=53  Identities=25%  Similarity=0.511  Sum_probs=36.1

Q ss_pred             CccEEEEEEeccCC--CCeeEEee--CCccC-------CC---------------------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMK--DGKPV-------PD---------------------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~--~~~~~-------~~---------------------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  .-.+.|+|  .++.+       ..                     .+...|.+.+++.+|.+.|
T Consensus        15 g~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~eDtAvY   94 (116)
T d1mjuh1          15 GASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSDDSAVY   94 (116)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCCCCceEE
Confidence            78999999998764  33577887  22211       00                     0113477888999999999


Q ss_pred             EEEEE
Q psy12725         50 QCVIR   54 (119)
Q Consensus        50 ~C~~~   54 (119)
                      +|...
T Consensus        95 YCAr~   99 (116)
T d1mjuh1          95 YCANK   99 (116)
T ss_dssp             EEEEE
T ss_pred             EEccc
Confidence            99643

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.54  E-value=0.00019  Score=34.31  Aligned_cols=44  Identities=16%  Similarity=0.403  Sum_probs=30.7

Q ss_pred             CCCeeeecCCccccCCCCcEEEEeEEccCCCC--eEEEEECCEEccc
Q psy12725         73 DPPVIKESFSDETLNPGPNYYFKCIASGNPTP--EISWYLDGKKLVN  117 (119)
Q Consensus        73 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~  117 (119)
                      .+|.+.+.+.. ....+...+|.|.+.|..+.  .+.|++||..+..
T Consensus         4 ~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~   49 (99)
T d1uvqa1           4 EVPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTE   49 (99)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECT
T ss_pred             cCCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccC
Confidence            35665553322 24556788999999998433  7999999998754

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.53  E-value=0.0002  Score=35.69  Aligned_cols=52  Identities=25%  Similarity=0.410  Sum_probs=36.1

Q ss_pred             CccEEEEEEeccCCC--CeeEEee--CCccC------C-C---------------------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNPV--KTISWMK--DGKPV------P-D---------------------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~~--~~v~w~~--~~~~~------~-~---------------------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|...  -.+.|+|  .++.+      . .                     .+...|.+.+++.+|.+.|
T Consensus        14 g~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~eDTAvY   93 (126)
T d1lmka1          14 GRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTSEDSAVY   93 (126)
T ss_dssp             TCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCCCcceEE
Confidence            899999999988643  3577886  22211      0 0                     0123578889999999999


Q ss_pred             EEEE
Q psy12725         50 QCVI   53 (119)
Q Consensus        50 ~C~~   53 (119)
                      +|..
T Consensus        94 YCAr   97 (126)
T d1lmka1          94 YCAR   97 (126)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            9964

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=0.00017  Score=34.53  Aligned_cols=43  Identities=23%  Similarity=0.354  Sum_probs=29.9

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCCCC--eEEEEECCEEccc
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNPTP--EISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~  117 (119)
                      +|.+.+.+.. ....|+.++|.|.+.|..+.  .+.|++||..+..
T Consensus         4 ~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~   48 (99)
T d1lk2b_           4 TPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPK   48 (99)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTT
T ss_pred             CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCC
Confidence            4555543322 24467889999999987333  7999999998764

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.52  E-value=0.0002  Score=35.33  Aligned_cols=54  Identities=19%  Similarity=0.403  Sum_probs=36.7

Q ss_pred             CccEEEEEEeccCC--CCeeEEee--CCccCC------C-------------C-----------CCCeEEEecCCCCCCe
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMK--DGKPVP------D-------------H-----------NEPVFRIDSVRKEDKG   47 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~--~~~~~~------~-------------~-----------~~~~l~~~~~~~~d~g   47 (119)
                      |+++.|.|.+.|..  .-.+.|+|  .++.+.      .             +           +...|.|.+++.+|.+
T Consensus        15 G~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~~eDtA   94 (120)
T d1dlfh_          15 GGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLRAEDTG   94 (120)
T ss_dssp             TCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             CCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeeccCCCce
Confidence            89999999998764  34678886  222110      0             0           1124788889999999


Q ss_pred             EEEEEEEc
Q psy12725         48 MYQCVIRN   55 (119)
Q Consensus        48 ~y~C~~~~   55 (119)
                      .|.|....
T Consensus        95 vYYCA~~~  102 (120)
T d1dlfh_          95 IYYCTGIY  102 (120)
T ss_dssp             EEEEEEEB
T ss_pred             EEEeeEec
Confidence            99996544

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.52  E-value=3.3e-05  Score=37.27  Aligned_cols=56  Identities=20%  Similarity=0.384  Sum_probs=34.6

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC--------CCCe---EEEecCCCC---CCeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH--------NEPV---FRIDSVRKE---DKGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~--------~~~~---l~~~~~~~~---d~g~y~C~~~~~~   57 (119)
                      ++.++|.|.+.+. | ...|.|.++|......        .+..   .....+..+   ....|+|.+.+..
T Consensus        19 ~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          19 KKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            5678999999885 4 5689999998654321        1111   111222222   3456999999864

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.52  E-value=5.5e-05  Score=36.45  Aligned_cols=57  Identities=16%  Similarity=0.337  Sum_probs=35.5

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC--------CCC------eEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH--------NEP------VFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~--------~~~------~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      .+.++|.|.+.+. | ...|.|.+++......        .+.      .|.+..-.......|+|.+.+...
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~~   91 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGL   91 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCC
Confidence            3568899999876 3 4689999998765321        111      223322222334579999998643

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=0.00028  Score=33.86  Aligned_cols=57  Identities=14%  Similarity=0.362  Sum_probs=34.5

Q ss_pred             CccEEEEEEeccC-CC--CeeEEeeCCccCCC-------CCC------CeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          2 LALKFFTCKYEGN-PV--KTISWMKDGKPVPD-------HNE------PVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         2 g~~~~l~c~~~~~-~~--~~v~w~~~~~~~~~-------~~~------~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      ++.++|.|.+.+. |.  ..+.|.+++.....       ..+      +.|.+....-.....|+|.+.+...
T Consensus        19 ~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~   91 (102)
T d2fbjh2          19 SDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSN   91 (102)
T ss_dssp             CSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTS
T ss_pred             CCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCC
Confidence            5678999999984 53  35778887765421       111      2233333332334579999988643

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.51  E-value=0.00013  Score=36.25  Aligned_cols=54  Identities=17%  Similarity=0.415  Sum_probs=36.8

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC------C-----------C-----------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV------P-----------D-----------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~------~-----------~-----------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.+..  ...+.|+|.  ++.+      .           .           .+...|.|..++.+|.+.|
T Consensus        15 g~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~eDTAvY   94 (125)
T d1op3h1          15 GGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVEDTAIY   94 (125)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCccceeE
Confidence            78999999998754  335788872  2111      0           0           0113478889999999999


Q ss_pred             EEEEEc
Q psy12725         50 QCVIRN   55 (119)
Q Consensus        50 ~C~~~~   55 (119)
                      +|....
T Consensus        95 YCAr~~  100 (125)
T d1op3h1          95 YCARKG  100 (125)
T ss_dssp             EEEEEC
T ss_pred             eEeecc
Confidence            997543

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.51  E-value=8.2e-05  Score=36.73  Aligned_cols=52  Identities=23%  Similarity=0.431  Sum_probs=36.1

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC------CC-----------C-----------CCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV------PD-----------H-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~------~~-----------~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  .-.+.|+|-  ++.+      ..           +           +...|.|.+++.+|.+.|
T Consensus        15 g~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDTAvY   94 (119)
T d1eapb1          15 GASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSEDSAVY   94 (119)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCCcceEE
Confidence            89999999998764  335889872  2211      00           0           113478889999999999


Q ss_pred             EEEE
Q psy12725         50 QCVI   53 (119)
Q Consensus        50 ~C~~   53 (119)
                      .|..
T Consensus        95 YCAr   98 (119)
T d1eapb1          95 FCKR   98 (119)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9964

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.51  E-value=0.00015  Score=35.83  Aligned_cols=54  Identities=26%  Similarity=0.493  Sum_probs=36.9

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC------C-C---------------------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV------P-D---------------------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~------~-~---------------------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  .-.+.|+|-  ++.+      . .                     .+...|.+.+++.+|.+.|
T Consensus        15 g~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~eDTAvY   94 (120)
T d1ad9b1          15 GSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSEDTAFY   94 (120)
T ss_dssp             TCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCCCcceEE
Confidence            89999999998764  335778762  2111      0 0                     1123578889999999999


Q ss_pred             EEEEEc
Q psy12725         50 QCVIRN   55 (119)
Q Consensus        50 ~C~~~~   55 (119)
                      +|....
T Consensus        95 YCAr~~  100 (120)
T d1ad9b1          95 FCAREK  100 (120)
T ss_dssp             EEEEEB
T ss_pred             EEEEcC
Confidence            997543

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=9.8e-05  Score=35.49  Aligned_cols=55  Identities=13%  Similarity=0.221  Sum_probs=35.0

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC-------C-----CCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH-------N-----EPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~-------~-----~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      ++.++|.|.+.+. | ...|.|.+++......       .     .+.|.+..-.. +.+.|+|.+.+..
T Consensus        20 ~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~   88 (101)
T d1kcvh2          20 ASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPK   88 (101)
T ss_dssp             CSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGG
T ss_pred             CCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCC
Confidence            5678999999885 4 5589998776543210       1     12344433322 3568999999864

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.50  E-value=0.0002  Score=35.78  Aligned_cols=54  Identities=22%  Similarity=0.521  Sum_probs=37.4

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC-----------C-C---------------------CCCCeEEEecCCCC
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV-----------P-D---------------------HNEPVFRIDSVRKE   44 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~-----------~-~---------------------~~~~~l~~~~~~~~   44 (119)
                      |+++.|.|.+.|..  .-.+.|+|.  ++.+           . .                     .+...|.|.+++.+
T Consensus        15 g~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~~l~~e   94 (127)
T d1i3ua_          15 GDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMNSLKPE   94 (127)
T ss_dssp             TCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeeeccccc
Confidence            89999999998764  345789872  2111           0 0                     01134788899999


Q ss_pred             CCeEEEEEEEc
Q psy12725         45 DKGMYQCVIRN   55 (119)
Q Consensus        45 d~g~y~C~~~~   55 (119)
                      |.+.|.|....
T Consensus        95 DtAvYYCAr~~  105 (127)
T d1i3ua_          95 DTAVYYCAAKT  105 (127)
T ss_dssp             GCEEEEEEEES
T ss_pred             ceeEEEEEEEe
Confidence            99999997653

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.49  E-value=0.00018  Score=35.74  Aligned_cols=53  Identities=23%  Similarity=0.448  Sum_probs=36.1

Q ss_pred             CccEEEEEEeccCCC--CeeEEeeC--CccC-------C----------CC-----------CCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNPV--KTISWMKD--GKPV-------P----------DH-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~~--~~v~w~~~--~~~~-------~----------~~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|...  -.+.|+|-  ++.+       .          .+           +...|.+.+++.+|.+.|
T Consensus        15 g~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~eDTA~Y   94 (124)
T d2b1hh1          15 GESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKPSDTALY   94 (124)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeeccccccceEE
Confidence            899999999987642  35788872  2111       0          01           113578889999999999


Q ss_pred             EEEEE
Q psy12725         50 QCVIR   54 (119)
Q Consensus        50 ~C~~~   54 (119)
                      .|...
T Consensus        95 YCAR~   99 (124)
T d2b1hh1          95 YCARL   99 (124)
T ss_dssp             EEEEE
T ss_pred             EEeec
Confidence            99543

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.49  E-value=3.7e-05  Score=37.02  Aligned_cols=55  Identities=20%  Similarity=0.437  Sum_probs=34.3

Q ss_pred             ccEEEEEEeccC-C-CCeeEEeeCCccCCCC--------CC------CeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          3 ALKFFTCKYEGN-P-VKTISWMKDGKPVPDH--------NE------PVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         3 ~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~--------~~------~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      +.++|.|.+.+. | ...|.|.+++......        .+      +.|.+..-.-.....|+|++.+..
T Consensus        19 ~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          19 DLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             SEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            568999999885 5 5689999998765321        11      122222111123457999998864

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.48  E-value=5.2e-05  Score=36.61  Aligned_cols=56  Identities=13%  Similarity=0.182  Sum_probs=34.4

Q ss_pred             CccEEEEEEeccC-CC---CeeEEeeCCccCCCC--------CCCe---EEEecCCCC---CCeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGN-PV---KTISWMKDGKPVPDH--------NEPV---FRIDSVRKE---DKGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~-~~---~~v~w~~~~~~~~~~--------~~~~---l~~~~~~~~---d~g~y~C~~~~~~   57 (119)
                      +..++|.|.+.+. |.   ..++|.+++......        .+..   .....+..+   ....|+|.+.+..
T Consensus        16 ~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          16 GLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             SSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             CCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence            4678999999874 32   478899988765321        1111   122234433   2346999999875

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.48  E-value=0.0002  Score=35.53  Aligned_cols=53  Identities=23%  Similarity=0.443  Sum_probs=36.7

Q ss_pred             CccEEEEEEeccCC--CCeeEEee--CCccCC-------C---------------------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMK--DGKPVP-------D---------------------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~--~~~~~~-------~---------------------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  .-.+.|+|  .++.+.       .                     .+...|.+..++.+|.+.|
T Consensus        15 G~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~eDTAvY   94 (124)
T d1yedb1          15 GTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKSEDSAVY   94 (124)
T ss_dssp             TCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCCCcceEE
Confidence            89999999998764  33578887  222210       0                     0123478889999999999


Q ss_pred             EEEEE
Q psy12725         50 QCVIR   54 (119)
Q Consensus        50 ~C~~~   54 (119)
                      +|...
T Consensus        95 YCAR~   99 (124)
T d1yedb1          95 FCTRW   99 (124)
T ss_dssp             EEEEC
T ss_pred             Eeccc
Confidence            99643

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=0.00015  Score=36.03  Aligned_cols=36  Identities=17%  Similarity=0.296  Sum_probs=28.9

Q ss_pred             CeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725         75 PVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYL  110 (119)
Q Consensus        75 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~  110 (119)
                      |.+...|....+.+|+.++|.|...+.....+.|++
T Consensus         2 ~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyr   37 (122)
T d1nezg_           2 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLF   37 (122)
T ss_dssp             CEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEE
T ss_pred             CceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEE
Confidence            555666667778899999999998776667899986

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.48  E-value=7.5e-05  Score=36.75  Aligned_cols=54  Identities=24%  Similarity=0.496  Sum_probs=37.0

Q ss_pred             CccEEEEEEeccCC--CCeeEEee--CCccCC------C---------------------CCCCeEEEecCCCCCCeEEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMK--DGKPVP------D---------------------HNEPVFRIDSVRKEDKGMYQ   50 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~--~~~~~~------~---------------------~~~~~l~~~~~~~~d~g~y~   50 (119)
                      |+++.|+|.+.|..  .-.+.|+|  .++.+.      .                     .+...|.+.+++.+|.+.|.
T Consensus        15 g~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDTAvYy   94 (116)
T d1fn4b1          15 SETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDTGTYY   94 (116)
T ss_dssp             TSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCCEEEE
T ss_pred             CCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCCEEEE
Confidence            78999999998764  34578987  222220      0                     01124778899999999999


Q ss_pred             EEEEc
Q psy12725         51 CVIRN   55 (119)
Q Consensus        51 C~~~~   55 (119)
                      |....
T Consensus        95 CAr~~   99 (116)
T d1fn4b1          95 CTRDL   99 (116)
T ss_dssp             EEEEC
T ss_pred             EEeec
Confidence            96543

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.47  E-value=0.00025  Score=33.19  Aligned_cols=30  Identities=27%  Similarity=0.657  Sum_probs=24.2

Q ss_pred             CCCcEEEEeEEccCCCC--eEEEEECCEEccc
Q psy12725         88 PGPNYYFKCIASGNPTP--EISWYLDGKKLVN  117 (119)
Q Consensus        88 ~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~  117 (119)
                      .++.+.|.|.+.+..+.  .+.|+++|..+..
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~   45 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQ   45 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCC
Confidence            45689999999997444  6899999998764

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.47  E-value=0.00022  Score=35.56  Aligned_cols=53  Identities=23%  Similarity=0.513  Sum_probs=35.7

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccCC-------C----------C-----------CCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPVP-------D----------H-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~~-------~----------~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  .-.+.|+|.  ++.+.       .          +           +...|.|.+++.+|.+.|
T Consensus        14 g~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~eDTAvY   93 (126)
T d1rjca1          14 GQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPEDTAMY   93 (126)
T ss_dssp             TCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGGGCEEE
T ss_pred             CCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCcccCcee
Confidence            89999999998764  345788872  22210       0          0           112378889999999999


Q ss_pred             EEEEE
Q psy12725         50 QCVIR   54 (119)
Q Consensus        50 ~C~~~   54 (119)
                      .|...
T Consensus        94 YCAr~   98 (126)
T d1rjca1          94 YCAAD   98 (126)
T ss_dssp             EEEEC
T ss_pred             EEEee
Confidence            99754

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.47  E-value=0.00017  Score=36.10  Aligned_cols=53  Identities=21%  Similarity=0.455  Sum_probs=36.1

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccCC-------C---------------------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPVP-------D---------------------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~~-------~---------------------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  ...+.|+|.  ++.+.       .                     .+...|.+.+++.+|.+.|
T Consensus        15 g~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~eDtA~Y   94 (130)
T d1rzga1          15 GSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRSEDTAVF   94 (130)
T ss_dssp             TCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCCCccEEE
Confidence            88999999998764  346889872  22110       0                     0112377888899999999


Q ss_pred             EEEEE
Q psy12725         50 QCVIR   54 (119)
Q Consensus        50 ~C~~~   54 (119)
                      .|...
T Consensus        95 YCAr~   99 (130)
T d1rzga1          95 YCASP   99 (130)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99753

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.46  E-value=0.00021  Score=35.66  Aligned_cols=54  Identities=17%  Similarity=0.415  Sum_probs=36.8

Q ss_pred             CccEEEEEEeccCCCC--eeEEeeC--CccC-------C----------C-----------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNPVK--TISWMKD--GKPV-------P----------D-----------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~~~--~v~w~~~--~~~~-------~----------~-----------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|....  .+.|+|-  ++.+       .          .           .+...|.+.+++.+|.+.|
T Consensus        15 g~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~eDTA~Y   94 (128)
T d2nxyd1          15 GSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDDTAVY   94 (128)
T ss_dssp             TCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccccCceEE
Confidence            7899999999886533  4678762  2111       0          0           0113477888999999999


Q ss_pred             EEEEEc
Q psy12725         50 QCVIRN   55 (119)
Q Consensus        50 ~C~~~~   55 (119)
                      .|....
T Consensus        95 YCAr~~  100 (128)
T d2nxyd1          95 FCAGVY  100 (128)
T ss_dssp             EEEEEE
T ss_pred             EEeEEe
Confidence            998654

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.45  E-value=0.00023  Score=35.47  Aligned_cols=53  Identities=26%  Similarity=0.516  Sum_probs=36.3

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC------C-C---------------------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV------P-D---------------------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~------~-~---------------------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  .-.+.|+|.  ++.+      . .                     .+...|.|..++.+|.+.|
T Consensus        15 g~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~eDtavY   94 (126)
T d1dfbh1          15 GRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMALY   94 (126)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccCcceEE
Confidence            88999999998764  335788872  2111      0 0                     0113478889999999999


Q ss_pred             EEEEE
Q psy12725         50 QCVIR   54 (119)
Q Consensus        50 ~C~~~   54 (119)
                      .|...
T Consensus        95 YCAr~   99 (126)
T d1dfbh1          95 YCVKG   99 (126)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99654

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.45  E-value=0.00019  Score=35.53  Aligned_cols=57  Identities=16%  Similarity=0.261  Sum_probs=35.7

Q ss_pred             CccEEEEEEeccC-C---CCeeEEeeCCccCCCC--------CCC---eEEEecCCCC---CCeEEEEEEEcCCC
Q psy12725          2 LALKFFTCKYEGN-P---VKTISWMKDGKPVPDH--------NEP---VFRIDSVRKE---DKGMYQCVIRNEQE   58 (119)
Q Consensus         2 g~~~~l~c~~~~~-~---~~~v~w~~~~~~~~~~--------~~~---~l~~~~~~~~---d~g~y~C~~~~~~~   58 (119)
                      ++.++|.|.+.+. |   ...++|.+++......        .+.   ......+..+   ....|+|.+.+...
T Consensus        32 ~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~l  106 (119)
T d1igtb3          32 SLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDL  106 (119)
T ss_dssp             TSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTC
T ss_pred             CCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECCC
Confidence            5678999999874 3   3578899998765321        111   1222334433   34579999998753

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.43  E-value=0.00024  Score=35.21  Aligned_cols=54  Identities=20%  Similarity=0.445  Sum_probs=36.7

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC------CC------------------------CCCCeEEEecCCCCCCe
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV------PD------------------------HNEPVFRIDSVRKEDKG   47 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~------~~------------------------~~~~~l~~~~~~~~d~g   47 (119)
                      |+++.|.|.+.|..  .-.+.|+|-  ++.+      ..                        .+...|.+..++.+|.+
T Consensus        15 g~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~eDTA   94 (122)
T d1q9rb1          15 GGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRAEDSA   94 (122)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             CCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeeccCcce
Confidence            88999999998764  335789862  2211      00                        01124788899999999


Q ss_pred             EEEEEEEc
Q psy12725         48 MYQCVIRN   55 (119)
Q Consensus        48 ~y~C~~~~   55 (119)
                      .|.|....
T Consensus        95 vYYCar~~  102 (122)
T d1q9rb1          95 TYYCARDH  102 (122)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecC
Confidence            99997643

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.43  E-value=0.0002  Score=35.76  Aligned_cols=54  Identities=28%  Similarity=0.501  Sum_probs=36.8

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC------CC----------------------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV------PD----------------------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~------~~----------------------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  ...+.|+|-  ++.+      ..                      .+...|.|.+++.+|.+.|
T Consensus        15 g~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~eDTA~Y   94 (127)
T d2fb4h1          15 GRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPEDTGVY   94 (127)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeecceeEE
Confidence            88999999998764  345788872  2111      00                      0113478888999999999


Q ss_pred             EEEEEc
Q psy12725         50 QCVIRN   55 (119)
Q Consensus        50 ~C~~~~   55 (119)
                      .|....
T Consensus        95 YCAr~~  100 (127)
T d2fb4h1          95 FCARDG  100 (127)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            997543

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=9e-05  Score=35.67  Aligned_cols=44  Identities=14%  Similarity=0.238  Sum_probs=28.8

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~  117 (119)
                      +|.+.+.+.......++.+.|.|.+.+. |.. .+.|++||..+..
T Consensus         5 ~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~   50 (102)
T d1rzfl2           5 APSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKA   50 (102)
T ss_dssp             CCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCS
T ss_pred             CCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCC
Confidence            4555543322222235678999999886 333 7999999998764

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.40  E-value=0.0002  Score=35.70  Aligned_cols=52  Identities=23%  Similarity=0.431  Sum_probs=35.8

Q ss_pred             CccEEEEEEeccCC--CCeeEEee--CCccC------C-C----------C-----------CCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMK--DGKPV------P-D----------H-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~--~~~~~------~-~----------~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  .--+.|+|  .++.+      . .          +           +...|.+..++.+|.+.|
T Consensus        15 g~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~eDtAvY   94 (127)
T d1n0xh1          15 GASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSADTAVY   94 (127)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCCCCceEE
Confidence            89999999998864  33578887  22221      0 0          0           112477888899999999


Q ss_pred             EEEE
Q psy12725         50 QCVI   53 (119)
Q Consensus        50 ~C~~   53 (119)
                      .|.-
T Consensus        95 YCAR   98 (127)
T d1n0xh1          95 YCAR   98 (127)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9964

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.38  E-value=0.0004  Score=34.90  Aligned_cols=54  Identities=17%  Similarity=0.479  Sum_probs=36.5

Q ss_pred             CccEEEEEEeccCCC--CeeEEeeC--CccC-------------------CC---------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNPV--KTISWMKD--GKPV-------------------PD---------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~~--~~v~w~~~--~~~~-------------------~~---------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|...  -.+.|+|-  ++.+                   +.         .+...|.+.+++.+|.+.|
T Consensus        14 g~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~eDtA~Y   93 (133)
T d1rzfh1          14 GSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRSDDTAVY   93 (133)
T ss_dssp             TCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCCCCCEEE
Confidence            889999999987643  35778762  2111                   00         1123477888999999999


Q ss_pred             EEEEEc
Q psy12725         50 QCVIRN   55 (119)
Q Consensus        50 ~C~~~~   55 (119)
                      .|....
T Consensus        94 YCAr~~   99 (133)
T d1rzfh1          94 YCASNS   99 (133)
T ss_dssp             EEEEEE
T ss_pred             Eeeecc
Confidence            996543

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.38  E-value=0.00018  Score=35.65  Aligned_cols=54  Identities=20%  Similarity=0.437  Sum_probs=37.0

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC------C-C----------C-----------CCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV------P-D----------H-----------NEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~------~-~----------~-----------~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|..  .-.+.|+|-  ++.+      . .          +           +...|.|.+++.+|.+.|
T Consensus        15 g~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~eDTAvY   94 (122)
T d1bz7b1          15 GGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAIY   94 (122)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             CCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecccCceEE
Confidence            88999999998764  335789872  2211      0 0          0           113477888999999999


Q ss_pred             EEEEEc
Q psy12725         50 QCVIRN   55 (119)
Q Consensus        50 ~C~~~~   55 (119)
                      .|....
T Consensus        95 YCAr~~  100 (122)
T d1bz7b1          95 YCTRGG  100 (122)
T ss_dssp             EEEEEC
T ss_pred             EeecCC
Confidence            997654

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00023  Score=33.64  Aligned_cols=30  Identities=23%  Similarity=0.443  Sum_probs=24.3

Q ss_pred             CCCcEEEEeEEccCCCC--eEEEEECCEEccc
Q psy12725         88 PGPNYYFKCIASGNPTP--EISWYLDGKKLVN  117 (119)
Q Consensus        88 ~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~  117 (119)
                      .|+.++|.|.+.|..+.  .+.|++||..+..
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~   45 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEP   45 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCC
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCC
Confidence            46789999999997433  7999999987754

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.35  E-value=0.00012  Score=35.93  Aligned_cols=53  Identities=25%  Similarity=0.475  Sum_probs=35.9

Q ss_pred             CccEEEEEEeccC--CCCeeEEeeC--CccC------C-C---------------------CCCCeEEEecCCCCCCeEE
Q psy12725          2 LALKFFTCKYEGN--PVKTISWMKD--GKPV------P-D---------------------HNEPVFRIDSVRKEDKGMY   49 (119)
Q Consensus         2 g~~~~l~c~~~~~--~~~~v~w~~~--~~~~------~-~---------------------~~~~~l~~~~~~~~d~g~y   49 (119)
                      |+++.|.|.+.|.  ..-.+.|+|-  ++.+      . .                     .+...|.+.+++.+|.+.|
T Consensus        15 g~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~eDTAvY   94 (117)
T d1b2wh1          15 GRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRPEDTAVY   94 (117)
T ss_dssp             TSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccCCcceEE
Confidence            8899999999775  3345678862  2211      0 0                     0123578889999999999


Q ss_pred             EEEEE
Q psy12725         50 QCVIR   54 (119)
Q Consensus        50 ~C~~~   54 (119)
                      +|...
T Consensus        95 YCAr~   99 (117)
T d1b2wh1          95 YCARG   99 (117)
T ss_dssp             ECCEE
T ss_pred             EEccc
Confidence            99644

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.35  E-value=0.00046  Score=34.07  Aligned_cols=53  Identities=19%  Similarity=0.414  Sum_probs=36.5

Q ss_pred             CccEEEEEEeccCCC--CeeEEee--CCccC------C---C---------------------CCCCeEEEecCCCCCCe
Q psy12725          2 LALKFFTCKYEGNPV--KTISWMK--DGKPV------P---D---------------------HNEPVFRIDSVRKEDKG   47 (119)
Q Consensus         2 g~~~~l~c~~~~~~~--~~v~w~~--~~~~~------~---~---------------------~~~~~l~~~~~~~~d~g   47 (119)
                      |+++.|.|.+.|...  -.+.|+|  .++.+      .   .                     .+...|.+.+++.+|.+
T Consensus        15 G~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L~~eDTA   94 (121)
T d1nfdf1          15 GSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLRVDDTA   94 (121)
T ss_dssp             TCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESCCGGGCE
T ss_pred             CCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecccCCCcce
Confidence            899999999987643  3467887  22211      0   0                     01124889999999999


Q ss_pred             EEEEEEE
Q psy12725         48 MYQCVIR   54 (119)
Q Consensus        48 ~y~C~~~   54 (119)
                      .|+|...
T Consensus        95 vYYCAr~  101 (121)
T d1nfdf1          95 IYYCTRA  101 (121)
T ss_dssp             ECEEEEE
T ss_pred             EEEEecc
Confidence            9999654

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.34  E-value=0.00013  Score=34.06  Aligned_cols=55  Identities=13%  Similarity=0.134  Sum_probs=32.5

Q ss_pred             ccEEEEEEeccC-C-CCeeEEeeCCccCCCC-------CCCeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          3 ALKFFTCKYEGN-P-VKTISWMKDGKPVPDH-------NEPVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         3 ~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~-------~~~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      +.++|.|.+.+. | ...|.|.+++......       .+.-..+..+.......|+|.+.+..
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~~~~~~yTC~V~H~~   77 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDN   77 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEETTTTTCEEEEEETT
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEEEEecCCCCEEEEEEEECC
Confidence            346899999987 4 5589999988765321       11111111122233446899988763

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=0.00018  Score=34.56  Aligned_cols=55  Identities=15%  Similarity=0.232  Sum_probs=32.6

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCCC------CC------CeEEEecCCCCCCeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPDH------NE------PVFRIDSVRKEDKGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~~------~~------~~l~~~~~~~~d~g~y~C~~~~~~   57 (119)
                      ++.++|.|.+.+. | ...|.|.+++......      .+      +.|.+..-.- +.+.|+|.+.+..
T Consensus        20 ~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w-~~~~ytC~V~H~~   88 (102)
T d1mjuh2          20 GSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PSQSITCNVAHPA   88 (102)
T ss_dssp             --CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTT-TTSCCEEEEEEGG
T ss_pred             CCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHc-CCceEEEEEEECC
Confidence            4678999999886 4 5589997765432110      11      2333333222 3567999999864

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.33  E-value=0.0004  Score=33.32  Aligned_cols=29  Identities=17%  Similarity=0.423  Sum_probs=23.0

Q ss_pred             CCCcEEEEeEEccC-CC-CeEEEEECCEEcc
Q psy12725         88 PGPNYYFKCIASGN-PT-PEISWYLDGKKLV  116 (119)
Q Consensus        88 ~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~  116 (119)
                      .+..+.|.|.+.+. |. ..+.|++||....
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~   48 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTEL   48 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEcc
Confidence            46789999999886 43 3799999998654

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00018  Score=34.58  Aligned_cols=44  Identities=11%  Similarity=0.198  Sum_probs=28.2

Q ss_pred             CCeeeecCCccccCCCCcEEEEeEEccCC-CC-eEEEEECCEEccc
Q psy12725         74 PPVIKESFSDETLNPGPNYYFKCIASGNP-TP-EISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~-~~~W~~~~~~~~~  117 (119)
                      +|.+.+.+.......+..++|.|.+.+.. .. .+.|++||..+..
T Consensus         5 ~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~   50 (102)
T d1q0xl2           5 SPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTA   50 (102)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             CCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCC
Confidence            45554433222222346789999998873 32 7999999987653

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00046  Score=33.40  Aligned_cols=44  Identities=20%  Similarity=0.357  Sum_probs=30.8

Q ss_pred             CCeeeecC-CccccCCCCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725         74 PPVIKESF-SDETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~-~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~  117 (119)
                      +|.+.+.+ ....+..++.++|.|.+.+. |.. .+.|++||..+..
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~   50 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPR   50 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCG
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCC
Confidence            45555433 23345567889999999886 433 7999999988754

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.29  E-value=0.00023  Score=33.94  Aligned_cols=30  Identities=17%  Similarity=0.406  Sum_probs=21.3

Q ss_pred             CCCcEEEEeEEccCCCC--eEEEEECCEEccc
Q psy12725         88 PGPNYYFKCIASGNPTP--EISWYLDGKKLVN  117 (119)
Q Consensus        88 ~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~  117 (119)
                      .++..+|.|.+.+..+.  .+.|++||..+..
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~   48 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKT   48 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEECCS
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEEcCC
Confidence            45667899999987433  7999999988754

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.0003  Score=33.82  Aligned_cols=56  Identities=18%  Similarity=0.311  Sum_probs=33.0

Q ss_pred             CccEEEEEEeccC-CC---CeeEEeeCCccCCCC--------CCC---eEEEecCCCC---CCeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGN-PV---KTISWMKDGKPVPDH--------NEP---VFRIDSVRKE---DKGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~-~~---~~v~w~~~~~~~~~~--------~~~---~l~~~~~~~~---d~g~y~C~~~~~~   57 (119)
                      ++.++|.|.+.+. |.   ..+.|++++......        .+.   ......+..+   ....|+|++.+..
T Consensus        16 ~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~   89 (103)
T d1fp5a1          16 RKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPH   89 (103)
T ss_dssp             TCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             CCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECC
Confidence            5678999999875 43   256777776554321        111   1122233332   2457999999864

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.21  E-value=0.0004  Score=32.63  Aligned_cols=29  Identities=14%  Similarity=0.218  Sum_probs=23.3

Q ss_pred             CCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725         89 GPNYYFKCIASGN-PTP-EISWYLDGKKLVN  117 (119)
Q Consensus        89 g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~  117 (119)
                      +..+.|.|.+.|. |.. .+.|++||..+..
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~   45 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGS   45 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCC
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeCCc
Confidence            4578999999997 433 7999999988754

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.20  E-value=0.00067  Score=32.44  Aligned_cols=29  Identities=14%  Similarity=0.400  Sum_probs=22.8

Q ss_pred             CCCcEEEEeEEccC-CCC-eEEEEECCEEcc
Q psy12725         88 PGPNYYFKCIASGN-PTP-EISWYLDGKKLV  116 (119)
Q Consensus        88 ~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~  116 (119)
                      ..+.+.|.|.+.+. |.. .+.|+++|..+.
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~   47 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAE   47 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEcc
Confidence            34678999999886 433 799999998765

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.20  E-value=0.00029  Score=34.14  Aligned_cols=30  Identities=20%  Similarity=0.444  Sum_probs=23.2

Q ss_pred             CCCcEEEEeEEccC-CC-CeEEEEECCEEccc
Q psy12725         88 PGPNYYFKCIASGN-PT-PEISWYLDGKKLVN  117 (119)
Q Consensus        88 ~g~~~~l~C~~~~~-p~-~~~~W~~~~~~~~~  117 (119)
                      .+..++|.|.+.+. |. ..+.|++||..+..
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~   50 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQN   50 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccC
Confidence            35678999999886 43 37999999987654

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00029  Score=33.37  Aligned_cols=29  Identities=21%  Similarity=0.437  Sum_probs=23.6

Q ss_pred             CCcEEEEeEEccCCCC--eEEEEECCEEccc
Q psy12725         89 GPNYYFKCIASGNPTP--EISWYLDGKKLVN  117 (119)
Q Consensus        89 g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~  117 (119)
                      +..+.|.|.+.|..+.  .++|++||..+..
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~   45 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQ   45 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGG
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCC
Confidence            4578999999998444  6899999998764

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.18  E-value=0.00033  Score=35.12  Aligned_cols=53  Identities=23%  Similarity=0.448  Sum_probs=36.2

Q ss_pred             CccEEEEEEeccCC--CCeeEEeeC--CccC------C-------------CC-----------CCCeEEEecCCCCCCe
Q psy12725          2 LALKFFTCKYEGNP--VKTISWMKD--GKPV------P-------------DH-----------NEPVFRIDSVRKEDKG   47 (119)
Q Consensus         2 g~~~~l~c~~~~~~--~~~v~w~~~--~~~~------~-------------~~-----------~~~~l~~~~~~~~d~g   47 (119)
                      |+++.|.|.+.|..  .-.+.|+|.  ++.+      .             .+           +...|.+.+++.+|.+
T Consensus        15 g~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~~eDTA   94 (131)
T d3c2ah1          15 GGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLKTEDTA   94 (131)
T ss_dssp             TCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred             CCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceeccccCCce
Confidence            88999999998764  336788862  2211      0             00           1134788899999999


Q ss_pred             EEEEEEE
Q psy12725         48 MYQCVIR   54 (119)
Q Consensus        48 ~y~C~~~   54 (119)
                      .|.|...
T Consensus        95 vYYCAR~  101 (131)
T d3c2ah1          95 VYSCTTD  101 (131)
T ss_dssp             EEEEEEE
T ss_pred             EEEEecc
Confidence            9999754

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00053  Score=32.83  Aligned_cols=29  Identities=17%  Similarity=0.480  Sum_probs=22.9

Q ss_pred             CCCcEEEEeEEccC-CCC-eEEEEECCEEcc
Q psy12725         88 PGPNYYFKCIASGN-PTP-EISWYLDGKKLV  116 (119)
Q Consensus        88 ~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~  116 (119)
                      .++.+.|.|.+.+. |.. .+.|++||....
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~   48 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPEN   48 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECC
Confidence            45678999999886 433 899999998754

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.10  E-value=0.00045  Score=32.86  Aligned_cols=30  Identities=7%  Similarity=0.267  Sum_probs=21.0

Q ss_pred             CCCcEEEEeEEccCCCC--eEEEEECCEEccc
Q psy12725         88 PGPNYYFKCIASGNPTP--EISWYLDGKKLVN  117 (119)
Q Consensus        88 ~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~  117 (119)
                      .++..+|.|.+.+..+.  .+.|++||..+..
T Consensus        15 ~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~   46 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPGQIKVRWFRNDQEETA   46 (97)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEECCEEcCC
Confidence            45667899999887443  7999999987653

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.09  E-value=0.00073  Score=32.35  Aligned_cols=28  Identities=18%  Similarity=0.459  Sum_probs=22.2

Q ss_pred             CCcEEEEeEEccCCCC--eEEEEECCEEcc
Q psy12725         89 GPNYYFKCIASGNPTP--EISWYLDGKKLV  116 (119)
Q Consensus        89 g~~~~l~C~~~~~p~~--~~~W~~~~~~~~  116 (119)
                      .+.+.|.|.+.+..+.  .+.|++||..+.
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~   48 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQE   48 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeecc
Confidence            4678999999887433  799999998764

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.0014  Score=31.44  Aligned_cols=31  Identities=29%  Similarity=0.615  Sum_probs=23.9

Q ss_pred             CCCCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725         87 NPGPNYYFKCIASGN-PTP-EISWYLDGKKLVN  117 (119)
Q Consensus        87 ~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~  117 (119)
                      ..+..+.|.|.+.+. |.. .+.|+++|..+..
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~   51 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDV   51 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCG
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccC
Confidence            344678899999886 444 6999999998764

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.07  E-value=0.0011  Score=31.82  Aligned_cols=32  Identities=19%  Similarity=0.314  Sum_probs=24.9

Q ss_pred             cCCCCcEEEEeEEccCCCC--eEEEEECCEEccc
Q psy12725         86 LNPGPNYYFKCIASGNPTP--EISWYLDGKKLVN  117 (119)
Q Consensus        86 ~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~  117 (119)
                      +..|...+|.|.+.+..+.  .+.|++||..+..
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~   48 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEG   48 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSS
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCC
Confidence            3457778999999997443  7999999987653

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.07  E-value=0.001  Score=31.35  Aligned_cols=29  Identities=38%  Similarity=0.564  Sum_probs=23.3

Q ss_pred             CCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725         89 GPNYYFKCIASGN-PTP-EISWYLDGKKLVN  117 (119)
Q Consensus        89 g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~  117 (119)
                      +..+.|.|.+.+. |.. .+.|+++|..+..
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~   45 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSH   45 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCS
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCC
Confidence            4568999999997 433 7999999998764

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.04  E-value=0.00026  Score=35.43  Aligned_cols=26  Identities=31%  Similarity=0.551  Sum_probs=20.8

Q ss_pred             ccEEEEEEeccC-C-CCeeEEeeCCccC
Q psy12725          3 ALKFFTCKYEGN-P-VKTISWMKDGKPV   28 (119)
Q Consensus         3 ~~~~l~c~~~~~-~-~~~v~w~~~~~~~   28 (119)
                      ..++|.|.+.+. | ...|.|++|+..+
T Consensus        21 ~~~tL~C~v~gf~P~~i~v~W~~~g~~~   48 (127)
T d1ogae2          21 QKATLVCLATGFYPDHVELSWWVNGKEV   48 (127)
T ss_dssp             SEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             CcEEEEEEEEeccCCCeEEEEEECCEEc
Confidence            568999999886 4 4479999998765

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.0006  Score=32.24  Aligned_cols=29  Identities=17%  Similarity=0.384  Sum_probs=23.4

Q ss_pred             CCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725         89 GPNYYFKCIASGN-PTP-EISWYLDGKKLVN  117 (119)
Q Consensus        89 g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~  117 (119)
                      ++.++|.|.+.+. |.. .+.|++||..+..
T Consensus        15 ~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~   45 (94)
T d1de4a1          15 SSVTTLRCRALNYYPQNITMKWLKDKQPMDA   45 (94)
T ss_dssp             SSCEEEEEEEEEEBSSCCEEEEEETTEECCG
T ss_pred             CCCEEEEEEEeeEECCCCEEEEEECCEECcc
Confidence            4568999999997 444 7999999998753

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00032  Score=33.81  Aligned_cols=57  Identities=18%  Similarity=0.277  Sum_probs=34.4

Q ss_pred             CccEEEEEEeccC-CC---CeeEEeeCCccCCCC--------CCCe---EEEecCCCC---CCeEEEEEEEcCCC
Q psy12725          2 LALKFFTCKYEGN-PV---KTISWMKDGKPVPDH--------NEPV---FRIDSVRKE---DKGMYQCVIRNEQE   58 (119)
Q Consensus         2 g~~~~l~c~~~~~-~~---~~v~w~~~~~~~~~~--------~~~~---l~~~~~~~~---d~g~y~C~~~~~~~   58 (119)
                      ++.++|.|.+.+. |.   ..+.|.+++..+...        .+..   .....+..+   ....|+|.+.+...
T Consensus        18 ~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   92 (105)
T d1l6xa1          18 SRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL   92 (105)
T ss_dssp             TSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred             CCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCC
Confidence            5678999999875 32   467898887654321        1111   222234433   34479999998753

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00059  Score=32.62  Aligned_cols=57  Identities=14%  Similarity=0.137  Sum_probs=34.7

Q ss_pred             CccEEEEEEeccC--C-CCeeEEeeCCccCCC------CCC---CeEEEecCCCCC---CeEEEEEEEcCCC
Q psy12725          2 LALKFFTCKYEGN--P-VKTISWMKDGKPVPD------HNE---PVFRIDSVRKED---KGMYQCVIRNEQE   58 (119)
Q Consensus         2 g~~~~l~c~~~~~--~-~~~v~w~~~~~~~~~------~~~---~~l~~~~~~~~d---~g~y~C~~~~~~~   58 (119)
                      ++.++|.|.+.+.  | ...|.|++++.....      ..+   .......+...+   ...|+|.+.+...
T Consensus        18 ~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~W~~g~~ftC~V~H~~~   89 (101)
T d1ow0a1          18 GSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPES   89 (101)
T ss_dssp             CSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCSSC
T ss_pred             CCCeEEEEEEeCCCCCcceEEEEEECCceeeeecceEECCCCCEEEEEEEEEcHHHcCCCCeEEEEEEeCCC
Confidence            5678999999885  3 347999987643211      111   122333444432   4579999998653

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00042  Score=33.52  Aligned_cols=29  Identities=14%  Similarity=0.353  Sum_probs=22.9

Q ss_pred             CCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725         89 GPNYYFKCIASGN-PTP-EISWYLDGKKLVN  117 (119)
Q Consensus        89 g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~  117 (119)
                      ...+.|.|.+.+. |.. .+.|++||..+..
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~   50 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVDNALQSG   50 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCS
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEECCEECCC
Confidence            4678999999886 433 7999999987654

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.0014  Score=29.76  Aligned_cols=49  Identities=33%  Similarity=0.626  Sum_probs=34.7

Q ss_pred             ccEEEEEEeccCCCCeeEEeeCCccCCC--CCCCeEEEecCCCCCCeEEEEEEE
Q psy12725          3 ALKFFTCKYEGNPVKTISWMKDGKPVPD--HNEPVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus         3 ~~~~l~c~~~~~~~~~v~w~~~~~~~~~--~~~~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      ..|.|.|..   ...+++|++++..+..  ....++-+-..-...-|.|.|...
T Consensus        18 g~V~L~Cn~---~~k~i~W~kdg~~i~~~~~~~ktlnLG~~~~DPRG~Y~C~~~   68 (81)
T d1sy6a1          18 GSVLLTCDA---EAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGS   68 (81)
T ss_dssp             SEEEEEECS---CSSEEEEEETTEEEEEEESSCCCEEEEEGGGCCEEEEEEESS
T ss_pred             CeEEEEeCC---CCcEEEEecCCeEeecccCCcceeecCCcccCCCcceEcCCC
Confidence            578899943   3458999999886532  345566666666777899999654

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.95  E-value=0.0029  Score=28.95  Aligned_cols=49  Identities=29%  Similarity=0.582  Sum_probs=34.5

Q ss_pred             ccEEEEEEeccCCCCeeEEeeCCccCCCC--CCCeEEEecCCCCCCeEEEEEEE
Q psy12725          3 ALKFFTCKYEGNPVKTISWMKDGKPVPDH--NEPVFRIDSVRKEDKGMYQCVIR   54 (119)
Q Consensus         3 ~~~~l~c~~~~~~~~~v~w~~~~~~~~~~--~~~~l~~~~~~~~d~g~y~C~~~   54 (119)
                      ..|.|.|..   ...++.|++++..+...  ....+-+-..-...-|.|.|...
T Consensus        23 GsV~L~Cn~---~~k~i~W~kdg~~i~~~~~~~ktlnLG~~~~DPRGiY~C~g~   73 (86)
T d1jbja1          23 GSVLLTCGL---TDKTIKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGA   73 (86)
T ss_dssp             CEEEEECSS---SCSCEEEEETTEECCCSSCCSSCCEEEETTSCCEEEEEEEES
T ss_pred             CeEEEEeCC---CCcEEEEecCCceecccccccceeecCCcccCCCcceEcCCC
Confidence            568899943   33589999998876533  33456666666777899999754

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0008  Score=29.95  Aligned_cols=47  Identities=15%  Similarity=0.389  Sum_probs=31.0

Q ss_pred             ccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEEEEc
Q psy12725          3 ALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCVIRN   55 (119)
Q Consensus         3 ~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~~~~   55 (119)
                      +.|.|.|.      .+|.|++++..........+-+-..-...-|.|.|....
T Consensus        10 ~~V~L~Cn------~si~W~k~~~~~~~~~~k~lnLG~~~~DPRG~Y~C~~~e   56 (74)
T d1xiwb_          10 DRVFVNCN------TSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGTD   56 (74)
T ss_dssp             TEEEEECS------SCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC---
T ss_pred             CeEEEEcc------CeeEEecCCcccccCCccEeecCCcccCCCcceEeCCcc
Confidence            46888893      479999987544334445666656666778999997653

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00062  Score=32.68  Aligned_cols=56  Identities=16%  Similarity=0.271  Sum_probs=33.3

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCCC-------CCC------CeEEEecCCCCCCeEEEEEEEcCCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVPD-------HNE------PVFRIDSVRKEDKGMYQCVIRNEQE   58 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~~-------~~~------~~l~~~~~~~~d~g~y~C~~~~~~~   58 (119)
                      +..++|.|.+.+. | ...|.|.+++.....       ..+      +.|.+..-.. ....|+|.+.+...
T Consensus        20 ~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w-~~~~ytC~V~H~~~   90 (103)
T d1c5ch2          20 GGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GTQTYICNVNHKPS   90 (103)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGG-GTCCCEEEEEEGGG
T ss_pred             CCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEEEEEEECcccc-CCCeEEEEEEeCCC
Confidence            4568999999876 4 458999876643211       111      2334332222 23469999998643

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=96.80  E-value=0.0017  Score=30.71  Aligned_cols=30  Identities=20%  Similarity=0.368  Sum_probs=23.6

Q ss_pred             CCCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725         88 PGPNYYFKCIASGN-PTP-EISWYLDGKKLVN  117 (119)
Q Consensus        88 ~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~  117 (119)
                      .++.++|.|.+.|. |.. .+.|++++..+..
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~   46 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQG   46 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTT
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCC
Confidence            45679999999887 444 7999999887653

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00066  Score=32.87  Aligned_cols=32  Identities=22%  Similarity=0.319  Sum_probs=25.6

Q ss_pred             ccCCCCcEEEEeEEcc-CCCC--eEEEEECCEEcc
Q psy12725         85 TLNPGPNYYFKCIASG-NPTP--EISWYLDGKKLV  116 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~~-~p~~--~~~W~~~~~~~~  116 (119)
                      .+.+|+.++|.|.+.+ .|.+  .+.|++++..+.
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~   46 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMK   46 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEE
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceee
Confidence            4678999999999865 4644  689999998765

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.74  E-value=0.0018  Score=31.15  Aligned_cols=29  Identities=31%  Similarity=0.633  Sum_probs=22.7

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      ...+.+|++++|.|...+.....+.||+.
T Consensus         9 s~~~~~G~svtL~C~~s~~~~~~~~WYrq   37 (106)
T d1lk3l1           9 ALTVSPGEKLTISCKASESVTSRMHWYQQ   37 (106)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCccEEEEec
Confidence            44678999999999987655557999963

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.71  E-value=0.0023  Score=30.87  Aligned_cols=31  Identities=26%  Similarity=0.420  Sum_probs=23.8

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      |....+.+|++++|.|.........+.||+.
T Consensus         8 P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq   38 (107)
T d1tjgl1           8 PSSLSASVGDRITITCRASQGVTSALAWYRQ   38 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEECCCCCccEEEEec
Confidence            4455678899999999986555567899973

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.71  E-value=0.0021  Score=30.99  Aligned_cols=31  Identities=19%  Similarity=0.305  Sum_probs=24.2

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      |....+.+|++++|.|.........+.||+.
T Consensus         8 P~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq   38 (107)
T d3cx5k1           8 PVSLAASLGDRVTISCRASQDINNFLNWYQQ   38 (107)
T ss_dssp             STTCCBCSSSCCEEEEEESSCCTTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCcCCCeEEEEc
Confidence            4456688999999999876665557999963

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.70  E-value=0.00035  Score=33.65  Aligned_cols=29  Identities=14%  Similarity=0.471  Sum_probs=22.9

Q ss_pred             CCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725         89 GPNYYFKCIASGN-PTP-EISWYLDGKKLVN  117 (119)
Q Consensus        89 g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~  117 (119)
                      +..+.|.|.+.+. |.. .+.|++||..+..
T Consensus        20 ~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~   50 (104)
T d1nfde2          20 TNKATLVCLVNDFYPGSATVTWKANGATIND   50 (104)
T ss_dssp             TTEECCCEEEEEEBSSCCEEEEEETTEEECS
T ss_pred             CCcEEEEEEEEEeeCCCCEEEEEECCEECCC
Confidence            4568899999886 433 7999999998764

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00028  Score=33.81  Aligned_cols=31  Identities=19%  Similarity=0.302  Sum_probs=24.7

Q ss_pred             ccCCCCcEEEEeEEc-cCCCCeEEEEECCEEc
Q psy12725         85 TLNPGPNYYFKCIAS-GNPTPEISWYLDGKKL  115 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~-~~p~~~~~W~~~~~~~  115 (119)
                      ...+|+.+.|.|.+. +.|.+.+.|++++..+
T Consensus        13 ~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~   44 (101)
T d1iray1          13 VSSANEIDVRPCPLNPNEHKGTITWYKDDSKT   44 (101)
T ss_dssp             EEETTSCEEECCCCCGGGCSSEEEEECSSTTS
T ss_pred             EEeCCCeEEEEeeCCCCCCCceEEEEECCccc
Confidence            456789999999875 5688899999987543

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.66  E-value=0.0024  Score=30.73  Aligned_cols=31  Identities=16%  Similarity=0.514  Sum_probs=23.7

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      |....+.+|++++|.|.........+.||+.
T Consensus         8 P~slsv~~G~svtl~C~~s~~~~~~~~WYrQ   38 (106)
T d1i8ka_           8 PASLSVATGEKVTIRCMTSTDIDDDMNWYQQ   38 (106)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCccEEEEeC
Confidence            4455678999999999876555557999963

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.64  E-value=0.00064  Score=33.92  Aligned_cols=44  Identities=25%  Similarity=0.603  Sum_probs=29.4

Q ss_pred             CCeeeecCC-ccccCCCCcEEEEeEEccC-CCC-eEEEEECCEEccc
Q psy12725         74 PPVIKESFS-DETLNPGPNYYFKCIASGN-PTP-EISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~~-~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~~  117 (119)
                      ||.+.+.+. ...+..+..++|.|.+.+. |.. .+.|++||+.+..
T Consensus         4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~   50 (127)
T d1ogae2           4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS   50 (127)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECS
T ss_pred             CCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccC
Confidence            566554332 2223445778999999887 333 7999999987753

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.61  E-value=0.0025  Score=30.68  Aligned_cols=31  Identities=23%  Similarity=0.489  Sum_probs=23.8

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      |....+.+|++++|.|.........+.||+.
T Consensus         8 p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq   38 (107)
T d1j1pl_           8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQ   38 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEecCCCCcceEEEEe
Confidence            4455678999999999876555567999963

>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=96.59  E-value=0.0011  Score=28.91  Aligned_cols=44  Identities=16%  Similarity=0.401  Sum_probs=29.4

Q ss_pred             ccEEEEEEeccCCCCeeEEeeCCccCCCCCCCeEEEecCCCCCCeEEEEE
Q psy12725          3 ALKFFTCKYEGNPVKTISWMKDGKPVPDHNEPVFRIDSVRKEDKGMYQCV   52 (119)
Q Consensus         3 ~~~~l~c~~~~~~~~~v~w~~~~~~~~~~~~~~l~~~~~~~~d~g~y~C~   52 (119)
                      +.|.|.|.      .+|.|++++.......+.++-+-..-...-|.|.|.
T Consensus         9 dkV~L~Cn------~sI~w~k~~~~~~~~~~ktlnLG~~~~DPRGiY~C~   52 (66)
T d1xmwa2           9 DKVILKCN------SSITLLQGTAGQEVSDNKTLNLGKRIEDPRGMYQCG   52 (66)
T ss_dssp             TEEEEECS------SSCEEEEECCCCBSSSSSBBCCBCSTTCCEEEEECC
T ss_pred             ceEEEEcc------CeEEEccCccccccCCCcEEeCCCcccCCCcceECC
Confidence            46788893      358999986544434445555555556667999993

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.59  E-value=0.0022  Score=30.83  Aligned_cols=31  Identities=26%  Similarity=0.424  Sum_probs=23.6

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      |....+.+|++++|.|.........+.||+.
T Consensus         8 P~~l~v~~G~svtl~C~~s~~~~~~~~WYrq   38 (107)
T d1kcvl1           8 PKSMGMSVGEAVTLNCKASENVGTYVSWYQQ   38 (107)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCEEeECCCCCEEEEEEecCCcCCceEEEEc
Confidence            3445577899999999977665557999963

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.58  E-value=0.0028  Score=30.56  Aligned_cols=31  Identities=23%  Similarity=0.422  Sum_probs=23.6

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      |....+.+|++++|.|...+.....+.||+.
T Consensus         8 P~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ   38 (107)
T d1ospl1           8 SSSFSVSLGDRVTITCKASEDIYSRLAWYQQ   38 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEecCCCcccccEEEEc
Confidence            4445678899999999876654457999973

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.58  E-value=0.0027  Score=30.62  Aligned_cols=30  Identities=20%  Similarity=0.274  Sum_probs=23.3

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~  110 (119)
                      |....+.+|++++|.|.........+.||+
T Consensus         8 P~s~~~~~G~svtl~C~~s~~~~~~~~Wyr   37 (107)
T d1c5cl1           8 PSSLSASLGERVSLTCRTSQEISGYLSWLQ   37 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCCCEEEEE
Confidence            344557789999999987765555799996

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.57  E-value=0.0028  Score=30.49  Aligned_cols=31  Identities=26%  Similarity=0.362  Sum_probs=23.6

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      |....+.+|++++|.|.........+.||+.
T Consensus         7 P~~l~~~~G~svtl~C~~s~~~~~~~~WYrq   37 (106)
T d1a0ql1           7 PSSLSASLGGKVTITCKASQDIKKYIGWYQH   37 (106)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCCeEEEEC
Confidence            4445678999999999876655557999973

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.55  E-value=0.0021  Score=30.97  Aligned_cols=44  Identities=9%  Similarity=0.053  Sum_probs=29.8

Q ss_pred             CCeeeecCC-ccccCCCCcEEEEeEEccCCCC--eEEEEECCEEccc
Q psy12725         74 PPVIKESFS-DETLNPGPNYYFKCIASGNPTP--EISWYLDGKKLVN  117 (119)
Q Consensus        74 ~~~~~~~~~-~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~  117 (119)
                      +|.+.+.+. ......+..+.|.|.+.+..+.  .+.|++||..+..
T Consensus         8 ~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~   54 (107)
T d1hxmb2           8 SPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTIL   54 (107)
T ss_dssp             SCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCC
T ss_pred             CCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccC
Confidence            455554432 2335566789999999887433  7999999876643

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.53  E-value=0.003  Score=30.44  Aligned_cols=31  Identities=19%  Similarity=0.332  Sum_probs=23.1

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      |....+.+|++++|.|.........+.||+.
T Consensus         8 p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ   38 (107)
T d1mexl1           8 QKFMSTSLGNRVSVTCKASQNVGTNVAWFQQ   38 (107)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCceEEEec
Confidence            3345578999999999876554557899963

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0011  Score=30.89  Aligned_cols=30  Identities=20%  Similarity=0.166  Sum_probs=23.9

Q ss_pred             ccCCCCcEEEEeEEccCCCCeEEEEECCEEc
Q psy12725         85 TLNPGPNYYFKCIASGNPTPEISWYLDGKKL  115 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~  115 (119)
                      ....|++++|.|.. ..|.+.+.|++++..+
T Consensus         6 ~~~~G~sVtl~c~~-~~p~~~v~W~~~~~~i   35 (93)
T d1ccza1           6 YGVVYGNVTFHVPS-NVPLKEVLWKKQKDKV   35 (93)
T ss_dssp             EEETTCCEEECCCC-SSCCSCEEEEETTEEE
T ss_pred             EEEECCCEEEEecC-CCCCcEEEEEEecccc
Confidence            34578999999975 4577799999988765

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.48  E-value=0.0044  Score=30.00  Aligned_cols=56  Identities=16%  Similarity=0.274  Sum_probs=34.2

Q ss_pred             CccEEEEEEeccC-C-CCeeEEeeCCccCC-------CCCC--CeEEEecCCCCC---CeEEEEEEEcCC
Q psy12725          2 LALKFFTCKYEGN-P-VKTISWMKDGKPVP-------DHNE--PVFRIDSVRKED---KGMYQCVIRNEQ   57 (119)
Q Consensus         2 g~~~~l~c~~~~~-~-~~~v~w~~~~~~~~-------~~~~--~~l~~~~~~~~d---~g~y~C~~~~~~   57 (119)
                      ++.++|.|.+.+. | ...|.|.+++....       ...+  .......+..++   ...|.|.+.+..
T Consensus        27 ~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   96 (111)
T d1pfca_          27 KKKVSLTCMITGFYPADINVEWDSSEPSDYKNTPPVFDTDGSFFLYSRLKVDTDAWNNGESFTCSVMHEA   96 (111)
T ss_dssp             TTSCCEEEEEESCCSSCCEEESSSCCTTTEEEEEEECCSSCCCEEEEEECCCSSCCHHHHCCEEEEEETT
T ss_pred             CCceEEEEEEEeeECCCcEEEEeeCCCCCcEEcccEECCCCcEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            4567899999886 4 46899988764321       1111  122334455544   346999999864

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.46  E-value=0.0034  Score=30.30  Aligned_cols=30  Identities=27%  Similarity=0.470  Sum_probs=23.1

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~  110 (119)
                      |....+.+|++++|.|.........+.||+
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~~~WYr   37 (108)
T d1jhll_           8 PSYLVASPGETITINCRASKSISKSLAWYQ   37 (108)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEE
T ss_pred             CCeEEecCCCCEEEEEEccCCcCCceEEEE
Confidence            344567889999999998765555799986

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0048  Score=29.96  Aligned_cols=34  Identities=29%  Similarity=0.364  Sum_probs=25.1

Q ss_pred             eecCCccccCCCCcEEEEeEEccCC-CCeEEEEEC
Q psy12725         78 KESFSDETLNPGPNYYFKCIASGNP-TPEISWYLD  111 (119)
Q Consensus        78 ~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~  111 (119)
                      ...|....+..|++++|.|...... ...+.|++.
T Consensus         4 ~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ   38 (114)
T d1akjd_           4 RVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQ   38 (114)
T ss_dssp             EEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEE
T ss_pred             eECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEE
Confidence            4455666788999999999875543 446899973

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.42  E-value=0.0033  Score=30.20  Aligned_cols=31  Identities=23%  Similarity=0.343  Sum_probs=23.8

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      |....+.+|++++|.|.........+.||+.
T Consensus         7 P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq   37 (106)
T d1op3k1           7 PSTLSASVGDTITITCRASQSIETWLAWYQQ   37 (106)
T ss_dssp             CSEEEECTTCEEEEEEEESSCCTTCEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCcEEEEec
Confidence            4455678999999999876655557999964

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.41  E-value=0.0039  Score=29.99  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=23.5

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      |....+.+|++++|.|.........+.||+.
T Consensus         8 P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq   38 (107)
T d1d5il1           8 PSSMYASLGERVTITCKASQDINSYLSWFQQ   38 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCccceeEe
Confidence            3445578899999999876665567889963

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.37  E-value=0.0022  Score=31.16  Aligned_cols=30  Identities=13%  Similarity=0.392  Sum_probs=23.1

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~  110 (119)
                      |....+.+|+.++|.|...+.....+.||+
T Consensus         7 P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyr   36 (113)
T d2bnqd1           7 PAALSVPEGENLVLNCSFTDSAIYNLQWFR   36 (113)
T ss_dssp             SSEEEEETTCCEEEEEEESCCCEEEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEEecCcccCCeEEE
Confidence            334456789999999998765555789997

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.37  E-value=0.0047  Score=30.23  Aligned_cols=31  Identities=16%  Similarity=0.312  Sum_probs=23.7

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      |....+.+|++++|.|...+.....+.||+.
T Consensus         8 P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ   38 (118)
T d2ij0c1           8 PSMVIVKSGTSVKIECRSLDTNIHTMFWYRQ   38 (118)
T ss_dssp             CSEEEECTTCCEEEEEEECSSCCSEEEEEEE
T ss_pred             CCeEEEcCCCCEEEEEEEcCCcccEEEEEEE
Confidence            3344578899999999976665668999973

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.36  E-value=0.0044  Score=29.93  Aligned_cols=30  Identities=23%  Similarity=0.348  Sum_probs=22.9

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~  110 (119)
                      |....+.+|++++|.|.........+.||+
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~i~WYr   37 (109)
T d1mqkl_           8 PVSLSASVGETVTITCRASENIYSYLAWYQ   37 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCcCcccceee
Confidence            344556789999999987655455799997

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.34  E-value=0.0035  Score=30.46  Aligned_cols=30  Identities=20%  Similarity=0.429  Sum_probs=23.4

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~  110 (119)
                      |....+.+|+.++|.|.........+.||+
T Consensus         7 P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyr   36 (114)
T d2cdea1           7 PQSLIILEGKNCTLQCNYTVSPFSNLRWYK   36 (114)
T ss_dssp             CSEEEEETTCCCEEEEEECCSCCSEEEEEE
T ss_pred             CCEEEEeCCCCEEEEEEEcCCCccCceEEE
Confidence            444557789999999998765566799996

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0084  Score=28.23  Aligned_cols=40  Identities=23%  Similarity=0.379  Sum_probs=28.8

Q ss_pred             CCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCE
Q psy12725         73 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK  113 (119)
Q Consensus        73 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~  113 (119)
                      .+|.+...+. ..+..|++++|.|.........|.|+|+|.
T Consensus         4 PkP~Lsa~P~-~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~   43 (96)
T d1ucta2           4 GKPFLSADRG-LVLMPGENISLTCSSAHIPFDRFSLAKEGE   43 (96)
T ss_dssp             CCCEEEESSC-SEECTTCCCEEEEECSSSCCSEEEEEETTC
T ss_pred             CCCEEEEeCC-CccCCCCeEEEEEeCCCCCceEEEEEECCc
Confidence            4666666553 468899999999975333344789999885

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.28  E-value=0.0018  Score=30.98  Aligned_cols=29  Identities=24%  Similarity=0.560  Sum_probs=22.1

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      ...+.+|++++|.|.........+.||+.
T Consensus         7 sl~~~~G~svtl~C~~~~~~~~~~~WYrQ   35 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPNQYAYWYQQ   35 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCCEEEEEc
Confidence            44578899999999876544457899963

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.25  E-value=0.0054  Score=29.55  Aligned_cols=30  Identities=23%  Similarity=0.366  Sum_probs=23.4

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~  110 (119)
                      |....+.+|++++|.|...+.....+.||+
T Consensus        10 P~~l~~~~G~svtL~C~~s~~~~~~~~WYr   39 (109)
T d1bwwa_          10 PSSLSASVGDRVTITCQASQDIIKYLNWYQ   39 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEE
T ss_pred             CCEEEECCCCCEEEEEEecCCCCCcceEee
Confidence            445567899999999998765555789996

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.16  E-value=0.0038  Score=30.39  Aligned_cols=29  Identities=24%  Similarity=0.485  Sum_probs=22.7

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      ...+.+|+.++|.|.........+.|||.
T Consensus        10 ~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq   38 (115)
T d1lp9e1          10 LVTLTEGLPVMLNCTYQSTYSPFLFWYVQ   38 (115)
T ss_dssp             EEEEETTSCEEECEEEECSSSCCEEEEEE
T ss_pred             eEEECCCCCEEEEEEEeCCCcCCeeEEEe
Confidence            34567899999999976666667999974

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.11  E-value=0.0059  Score=29.45  Aligned_cols=29  Identities=14%  Similarity=0.275  Sum_probs=22.1

Q ss_pred             CccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725         82 SDETLNPGPNYYFKCIASGNPTPEISWYL  110 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~  110 (119)
                      ....+.+|++++|.|.........+.||+
T Consensus         8 ~s~~~~~G~svtl~C~~s~~~~~~~~WYr   36 (111)
T d1bd2d1           8 PSLSVQEGRISILNCDYTNSMFDYFLWYK   36 (111)
T ss_dssp             SEEEEETTSCEEEEEEECCTTCCEEEEEE
T ss_pred             CEEEEcCCCCEEEEEEeCCCCCCeEEEEE
Confidence            33456789999999987665555788986

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.03  E-value=0.0064  Score=29.17  Aligned_cols=29  Identities=10%  Similarity=0.158  Sum_probs=21.2

Q ss_pred             ccCCCCcEEEEeEEccCCCCeEEEEECCE
Q psy12725         85 TLNPGPNYYFKCIASGNPTPEISWYLDGK  113 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~~~p~~~~~W~~~~~  113 (119)
                      .+.+|+.+.|.|.........+.|+|...
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~   38 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNT   38 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSC
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcc
Confidence            46699999999974333345899998543

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0058  Score=29.28  Aligned_cols=31  Identities=16%  Similarity=0.343  Sum_probs=22.0

Q ss_pred             cCCCCcEEEEeEEccC-CCC-eEEEEECCEEcc
Q psy12725         86 LNPGPNYYFKCIASGN-PTP-EISWYLDGKKLV  116 (119)
Q Consensus        86 ~~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~~~  116 (119)
                      ......+.|.|.+.+. |.. .+.|+++|..+.
T Consensus        18 ~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~   50 (105)
T d1dn0b2          18 PSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDI   50 (105)
T ss_dssp             ---CCSEEEEEEEEEEBSSCCEEEEEETTSCEE
T ss_pred             cCCCCceEEEEEEecccCCcEEEEEEECCcccc
Confidence            3445789999999886 443 799999886544

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.01  E-value=0.0071  Score=29.46  Aligned_cols=29  Identities=21%  Similarity=0.540  Sum_probs=22.0

Q ss_pred             ccccCCCCcEEEEeEEccC--CCCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGN--PTPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~--p~~~~~W~~~  111 (119)
                      ...+.+|++++|.|...+.  ....+.||+.
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ   39 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQ   39 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEEC
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceee
Confidence            4567889999999987554  2457899974

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.00  E-value=0.01  Score=28.62  Aligned_cols=31  Identities=23%  Similarity=0.443  Sum_probs=23.1

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      |....+.+|+.++|.|.........+.||+.
T Consensus         8 P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ   38 (112)
T d1fo0b_           8 PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQ   38 (112)
T ss_dssp             CSEEECCTTCCEEEEEEESCTTCCEEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEEecCCCCcEEEEeE
Confidence            3344577899999999876554557999974

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.99  E-value=0.0057  Score=30.05  Aligned_cols=31  Identities=23%  Similarity=0.332  Sum_probs=23.4

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      |....+.+|++++|.|...+.....+.||+.
T Consensus         8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ   38 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQ   38 (119)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCcceeEEeee
Confidence            3445678999999999876554457899974

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.95  E-value=0.0045  Score=30.10  Aligned_cols=30  Identities=23%  Similarity=0.486  Sum_probs=23.0

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~  110 (119)
                      +....+.+|+.++|.|.........+.||+
T Consensus         7 p~~v~~~~G~~vtl~C~~s~~~~~~i~WYr   36 (115)
T d1j8hd1           7 GSHVSVSEGALVLLRCNYSSSVPPYLFWYV   36 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEE
T ss_pred             CCeEEEcCCCCEEEEEEeCCCCceeEEEEE
Confidence            334557899999999987655556799997

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=95.94  E-value=0.0021  Score=30.52  Aligned_cols=27  Identities=22%  Similarity=0.411  Sum_probs=21.1

Q ss_pred             CCcEEEEeEEccCCCC--eEEEEECCEEc
Q psy12725         89 GPNYYFKCIASGNPTP--EISWYLDGKKL  115 (119)
Q Consensus        89 g~~~~l~C~~~~~p~~--~~~W~~~~~~~  115 (119)
                      ...+.|.|.+.|..+.  .+.|++||..+
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~   42 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGG   42 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSS
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccc
Confidence            3468999999998444  79999987654

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.92  E-value=0.0084  Score=29.09  Aligned_cols=31  Identities=23%  Similarity=0.247  Sum_probs=22.9

Q ss_pred             cCCccccCCCCcEEEEeEEccC-CCCeEEEEE
Q psy12725         80 SFSDETLNPGPNYYFKCIASGN-PTPEISWYL  110 (119)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~  110 (119)
                      .|....+.+|+.++|.|...+. ....+.||+
T Consensus         5 sP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyr   36 (114)
T d3bp5a1           5 YPAWLTVSEGANATFTCSLSNWSEDLMLNWNR   36 (114)
T ss_dssp             ESSEEEEETTCCEEEEEEESCCCTTCEEEEEE
T ss_pred             CCCeEEECCCCCEEEEEEECCCCCcceEEEEE
Confidence            3445567899999999987554 334689997

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.88  E-value=0.0076  Score=29.21  Aligned_cols=31  Identities=13%  Similarity=0.178  Sum_probs=23.0

Q ss_pred             CCccccCCCCcEEEEeEEccC-CCCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGN-PTPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~  111 (119)
                      |....+.+|++++|.|...+. ....+.||+.
T Consensus         5 P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq   36 (115)
T d2atpb1           5 PSSLLVQTNHTAKMSCEVKSISKLTSIYWLRE   36 (115)
T ss_dssp             CSEEEECTTSCEEEEEECCSSCCSSEEEEEEE
T ss_pred             CCcEEEcCCCCEEEEEEEeCCCCCCceEEEEe
Confidence            334467899999999998664 3457899964

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.87  E-value=0.0055  Score=29.41  Aligned_cols=29  Identities=17%  Similarity=0.355  Sum_probs=21.7

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      ...+.+|+.++|.|.........+.||+.
T Consensus         8 ~~~~~~G~~vtl~C~~~~~~~~~~~WYrq   36 (110)
T d1u3ha1           8 SLTVWEGETAILNCSYENSAFDYFPWYQQ   36 (110)
T ss_dssp             SEEEETTSCEEEEEEECCTTEEEEEEEEE
T ss_pred             EEEEcCCCCEEEEEEecCCCCcEEEEEee
Confidence            44567899999999876544446899974

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=95.85  E-value=0.0036  Score=30.30  Aligned_cols=29  Identities=17%  Similarity=0.491  Sum_probs=21.6

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      ...+.+|++++|.|.........+.||+.
T Consensus         9 sl~~~~G~svtl~C~~~~~~~~~i~WYrQ   37 (109)
T d1w72l1           9 SVSVAPGQTARITCGGNNIGSRSVHWYQQ   37 (109)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEE
T ss_pred             eEEECCCCCEEEEEEcCCCCCcceeeeec
Confidence            44677899999999865444456899963

>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.78  E-value=0.00024  Score=34.97  Aligned_cols=27  Identities=22%  Similarity=0.233  Sum_probs=19.5

Q ss_pred             CccEEEEEEeccC-CC---CeeEEeeCCccC
Q psy12725          2 LALKFFTCKYEGN-PV---KTISWMKDGKPV   28 (119)
Q Consensus         2 g~~~~l~c~~~~~-~~---~~v~w~~~~~~~   28 (119)
                      +..++|.|.+.+. |.   ..+.|.+++...
T Consensus        29 ~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~   59 (116)
T d1igyb3          29 TVTPKVTCVVVDISKDDPEVQFSWFVDNVEV   59 (116)
T ss_dssp             TSCCEEEEEECCCCSSCCCCCBCBBSSSCCB
T ss_pred             CCCcEEEEEEecEeCCCCEEEEEECcCCeEc
Confidence            5678999999885 32   356788877544

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.65  E-value=0.0057  Score=29.07  Aligned_cols=28  Identities=18%  Similarity=0.548  Sum_probs=21.1

Q ss_pred             CCCCcEEEEeEEccC-CCC-eEEEEECCEE
Q psy12725         87 NPGPNYYFKCIASGN-PTP-EISWYLDGKK  114 (119)
Q Consensus        87 ~~g~~~~l~C~~~~~-p~~-~~~W~~~~~~  114 (119)
                      ..++.++|.|.+.+. |.. .+.|.+++..
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~   47 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALS   47 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCC
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCc
Confidence            456789999999886 433 7999877643

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.62  E-value=0.0074  Score=29.29  Aligned_cols=28  Identities=29%  Similarity=0.609  Sum_probs=21.7

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYL  110 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~  110 (119)
                      ...+.+|++++|.|.........+.||+
T Consensus         9 ~v~v~~G~svtl~C~~~~~~~~~~~Wyr   36 (115)
T d1i9ea_           9 RVTVSEGASLQLRCKYSYSATPYLFWYV   36 (115)
T ss_dssp             EEEEETTSCEEECCEEECSSCCEEEEEE
T ss_pred             eEEECCCCCEEEEEEEcCCCCCCEEEEE
Confidence            3457789999999987655556788986

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.61  E-value=0.0068  Score=29.21  Aligned_cols=31  Identities=19%  Similarity=0.372  Sum_probs=22.6

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      +....+.+|+.++|.|.........+.||+.
T Consensus         7 p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ   37 (110)
T d1ac6a_           7 EGQVALSEEDFLTIHCNYSASGYPALFWYVQ   37 (110)
T ss_dssp             CSEEEEETTEEEEECEEEECSSCCEEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEecCCCCcceEEEEc
Confidence            3344577899999999865544457999973

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0084  Score=28.25  Aligned_cols=38  Identities=13%  Similarity=0.066  Sum_probs=27.0

Q ss_pred             CCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECC
Q psy12725         73 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDG  112 (119)
Q Consensus        73 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~  112 (119)
                      .+|.+...+. ..+..|+.++|.|... .+...+.|+++|
T Consensus         6 pkPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~l~k~g   43 (99)
T d1ucta1           6 PMPFISAKSS-PVIPLDGSVKIQCQAI-REAYLTQLMIIK   43 (99)
T ss_dssp             CCCCEEESSC-SEEETTCCEEEEECCC-TTCSEEEEEEEE
T ss_pred             CCCEEEecCC-CceeCCCeEEEEEcCC-CCCcEEEEEECC
Confidence            4566666554 3578899999999753 344578888765

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.03  Score=26.11  Aligned_cols=40  Identities=13%  Similarity=0.083  Sum_probs=28.3

Q ss_pred             CCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCEE
Q psy12725         73 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGKK  114 (119)
Q Consensus        73 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~  114 (119)
                      .+|.+...+. ..+..|+.++|.|... .....+.|+++|..
T Consensus         3 PKPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~   42 (95)
T d1olla1           3 PKPFIWAEPH-FMVPKEKQVTICCQGN-YGAVEYQLHFEGSL   42 (95)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECC-TTCCEEEEEETTEE
T ss_pred             CCCEEEeeCC-CcccCCCcEEEEEecC-CCccEEEEEECCCC
Confidence            3566665553 3577999999999753 33457999998864

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=95.48  E-value=0.0076  Score=27.80  Aligned_cols=28  Identities=11%  Similarity=-0.015  Sum_probs=21.6

Q ss_pred             CcEEEEeEEccCCCC--eEEEEECCEEccc
Q psy12725         90 PNYYFKCIASGNPTP--EISWYLDGKKLVN  117 (119)
Q Consensus        90 ~~~~l~C~~~~~p~~--~~~W~~~~~~~~~  117 (119)
                      ..+.|.|.+.+..+.  .+.|.++|..+..
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~   43 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEF   43 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEEC
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccC
Confidence            446899999988443  7899999987654

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.43  E-value=0.022  Score=27.83  Aligned_cols=31  Identities=19%  Similarity=0.312  Sum_probs=23.4

Q ss_pred             CCccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      +....+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         6 sg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ   38 (117)
T d1um5h1           6 SGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQ   38 (117)
T ss_dssp             CCCEEECTTCCEEEEEEESSCCCSCCEEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEccccCCCCcCcccee
Confidence            3445678899999999998764  346889864

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.42  E-value=0.015  Score=28.07  Aligned_cols=29  Identities=24%  Similarity=0.297  Sum_probs=21.4

Q ss_pred             ccccCCCCcEEEEeEEccCC-CCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGNP-TPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~  111 (119)
                      ...+.+|++++|.|...+.. ...+.||+.
T Consensus         7 ~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ   36 (112)
T d1kgcd1           7 SMESNEEEPVHLPCNHSTISGTDYIHWYRQ   36 (112)
T ss_dssp             EEEEETTSCEEEEEEESCCCTTCCEEEEEE
T ss_pred             EEEECCCCCEEEEEEEeCCCccccEEEEEE
Confidence            34567899999999876543 345899973

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.41  E-value=0.022  Score=28.38  Aligned_cols=31  Identities=26%  Similarity=0.461  Sum_probs=23.4

Q ss_pred             CCccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      +....+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         6 sg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ   38 (130)
T d1rhhb1           6 SGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQ   38 (130)
T ss_dssp             CCCEEECTTCCEEEEEEETTSCCTTCEEEEEEE
T ss_pred             cCCceECCCCCeEEEEEEeCCCccCCCcceEEe
Confidence            4445678999999999998864  336888863

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.40  E-value=0.01  Score=28.21  Aligned_cols=31  Identities=16%  Similarity=0.414  Sum_probs=22.7

Q ss_pred             CCCCcEEEEeEEccC-CC---CeEEEEECCEEccc
Q psy12725         87 NPGPNYYFKCIASGN-PT---PEISWYLDGKKLVN  117 (119)
Q Consensus        87 ~~g~~~~l~C~~~~~-p~---~~~~W~~~~~~~~~  117 (119)
                      ..+..++|.|.+.+. |.   ..+.|+++|..+..
T Consensus        14 ~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~   48 (103)
T d1i1ca1          14 GGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHT   48 (103)
T ss_dssp             TSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECC
T ss_pred             ccCCCcEEEEEEEeeECCCCCEEEEEEECCccccC
Confidence            345678999999775 33   37889999887653

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.36  E-value=0.02  Score=28.20  Aligned_cols=31  Identities=26%  Similarity=0.470  Sum_probs=23.9

Q ss_pred             CCccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      +....+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         8 sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ   40 (122)
T d1vgeh1           8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQ   40 (122)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSEEEEEEE
T ss_pred             cCCcEECCCCCEEEEEEEcCCCccCCCceeeEe
Confidence            4555688999999999998864  336888863

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=95.33  E-value=0.021  Score=27.57  Aligned_cols=31  Identities=19%  Similarity=0.489  Sum_probs=21.8

Q ss_pred             CCccccCCCCcEEEEeEEccC-----CCCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGN-----PTPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~-----p~~~~~W~~~  111 (119)
                      +....+.+|++++|.|...+.     ....+.||+.
T Consensus         8 p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq   43 (112)
T d1mjul1           8 APSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQ   43 (112)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCCCceeEEEEC
Confidence            334557789999999987553     1346899863

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=95.26  E-value=0.046  Score=25.71  Aligned_cols=40  Identities=15%  Similarity=0.295  Sum_probs=28.9

Q ss_pred             cCCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCE
Q psy12725         72 FDPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK  113 (119)
Q Consensus        72 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~  113 (119)
                      +.+|.+...+. ..+..|+.++|.|.... +...|.++|+|.
T Consensus         4 ~pkPsLsa~P~-~~V~~G~~VTL~C~~~~-~~~~f~L~k~g~   43 (99)
T d1nkra2           4 YEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGE   43 (99)
T ss_dssp             SCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTC
T ss_pred             CCCCEEEEeCC-CcccCCCeEEEEECCCC-CccEEEEEECCC
Confidence            35666666553 46789999999997532 445799999874

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=95.25  E-value=0.012  Score=28.54  Aligned_cols=30  Identities=23%  Similarity=0.566  Sum_probs=22.1

Q ss_pred             CCccccCCCCcEEEEeEEccC-CCCeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGN-PTPEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~  110 (119)
                      +....+.+|+.++|.|..... ....+.||+
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyr   37 (116)
T d1tvda_           7 SPDQTVASGSEVVLLCTYDTVYSNPDLFWYR   37 (116)
T ss_dssp             SCCEEEETTCCEEECCEEECCSSSCCEEEEE
T ss_pred             CCCEEEcCCCCEEEEEEEcCCccCCcEEEEE
Confidence            344457789999999986443 455799986

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.23  E-value=0.005  Score=29.67  Aligned_cols=28  Identities=14%  Similarity=0.377  Sum_probs=21.0

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYL  110 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~  110 (119)
                      ...+.+|++++|.|.........+.||+
T Consensus         8 s~~~~~G~svtl~C~~~~~~~~~i~WYr   35 (108)
T d1nfde1           8 SASVTVGETVKITCSGDQLPKNFAYWFQ   35 (108)
T ss_dssp             EEEEETTSCCCEEEEETTGGGSCCEEEE
T ss_pred             eeEECCCCCEEEEEECCCCCCccEEEEe
Confidence            4456789999999987544445689996

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=95.22  E-value=0.015  Score=27.81  Aligned_cols=31  Identities=26%  Similarity=0.589  Sum_probs=22.3

Q ss_pred             CCccccCCCCcEEEEeEEccC-CCCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGN-PTPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~  111 (119)
                      |....+.+|+.++|.|..... ....+.||+.
T Consensus         8 P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq   39 (108)
T d2fx7l1           8 PGTQSLSPGERATLSCRASQSVGNNKLAWYQQ   39 (108)
T ss_dssp             SSEEEECTTCCEEEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEeecCCCCccceeEec
Confidence            344567899999999987544 2346889964

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.22  E-value=0.0073  Score=29.21  Aligned_cols=26  Identities=12%  Similarity=0.307  Sum_probs=19.5

Q ss_pred             CCCcEEEEeEEccCCC--CeEEEEECCE
Q psy12725         88 PGPNYYFKCIASGNPT--PEISWYLDGK  113 (119)
Q Consensus        88 ~g~~~~l~C~~~~~p~--~~~~W~~~~~  113 (119)
                      .+..++|.|.+.+..+  ..+.|.+++.
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~   53 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSSEP   53 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSCCT
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeCCC
Confidence            3567899999988743  3799987763

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.20  E-value=0.018  Score=28.18  Aligned_cols=30  Identities=23%  Similarity=0.485  Sum_probs=22.4

Q ss_pred             CccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         82 SDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      ....+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         8 g~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ   39 (117)
T d1iqdb1           8 GAEVKKPGASVKVSCKVSGYTLTELPVHWVRQ   39 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCEEEEEE
Confidence            344578899999999998763  336888863

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=95.15  E-value=0.024  Score=27.69  Aligned_cols=29  Identities=21%  Similarity=0.453  Sum_probs=21.6

Q ss_pred             CccccCCCCcEEEEeEEccCC--CCeEEEEE
Q psy12725         82 SDETLNPGPNYYFKCIASGNP--TPEISWYL  110 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~  110 (119)
                      ....+.+|++++|.|...+..  ...+.||+
T Consensus         9 ~sv~v~~G~~vtL~C~~s~~~~~~~~~~Wyr   39 (120)
T d1hxma1           9 QTVPVSIGVPATLRCSMKGEAIGNYYINWYR   39 (120)
T ss_dssp             SEEEEETTCCEEEEEEECSSCGGGSEEEEEE
T ss_pred             CCEEECCCCCEEEEEEEeccCccCCcCeEEE
Confidence            344577899999999986543  34689996

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=95.11  E-value=0.016  Score=27.98  Aligned_cols=29  Identities=24%  Similarity=0.481  Sum_probs=22.2

Q ss_pred             CccccCCCCcEEEEeEEccCC--CCeEEEEE
Q psy12725         82 SDETLNPGPNYYFKCIASGNP--TPEISWYL  110 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~  110 (119)
                      ....+.+|+++.|.|.+.|..  ...+.|++
T Consensus         8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvR   38 (109)
T d2ck0h1           8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVR   38 (109)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CCCeECCCCCeEEEEEECCCcccccccccce
Confidence            344678999999999998764  33688886

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.09  E-value=0.032  Score=27.22  Aligned_cols=30  Identities=27%  Similarity=0.437  Sum_probs=22.9

Q ss_pred             CCccccCCCCcEEEEeEEccCC--CCeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGNP--TPEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~  110 (119)
                      +....+.+|+++.|.|.++|..  ...+.|++
T Consensus         7 sG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvR   38 (117)
T d1jnhb1           7 SGAELARPGASVKLSCRTSGYSFTTYWMQWVR   38 (117)
T ss_dssp             CCCEECCTTCCEEEEEEEESSCSSSSEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceeeee
Confidence            3444578899999999998864  34688986

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.08  E-value=0.015  Score=27.92  Aligned_cols=31  Identities=19%  Similarity=0.445  Sum_probs=22.2

Q ss_pred             CCccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      |....+.+|++++|.|...+..  ...+.|++.
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ   39 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQ   39 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEE
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeee
Confidence            3345678999999999876543  235899974

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.08  E-value=0.02  Score=28.07  Aligned_cols=31  Identities=29%  Similarity=0.506  Sum_probs=23.2

Q ss_pred             CCccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      +....+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         7 sG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ   39 (119)
T d1eapb1           7 SGTELVKPGASVKISCKASGYISTDHAIHWVKQ   39 (119)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEccCcccCCCCcccee
Confidence            3445578899999999998764  336889863

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=95.08  E-value=0.024  Score=27.62  Aligned_cols=30  Identities=17%  Similarity=0.386  Sum_probs=22.8

Q ss_pred             CccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         82 SDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      ....+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         8 G~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ   39 (116)
T d7fabh1           8 GPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQ   39 (116)
T ss_dssp             CCSEECTTSCEEEEEEEESSCSTTSEEEEEEE
T ss_pred             CCceECCCCCEEEEEEEeeecCCCCcceeceE
Confidence            344578899999999998764  346889863

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=95.07  E-value=0.038  Score=26.90  Aligned_cols=32  Identities=16%  Similarity=0.369  Sum_probs=24.4

Q ss_pred             cCCCCcEEEEeEEccC-CC---CeEEEEECCEEccc
Q psy12725         86 LNPGPNYYFKCIASGN-PT---PEISWYLDGKKLVN  117 (119)
Q Consensus        86 ~~~g~~~~l~C~~~~~-p~---~~~~W~~~~~~~~~  117 (119)
                      ...+..+.|.|.+.+. |.   ..+.|+++|..+..
T Consensus        29 ~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~   64 (119)
T d1igtb3          29 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHT   64 (119)
T ss_dssp             HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSS
T ss_pred             cccCCceEEEEEeecccCCCCcEEEEEeeCCcccCC
Confidence            3457789999999875 32   36889999987754

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.04  E-value=0.036  Score=26.52  Aligned_cols=29  Identities=17%  Similarity=0.430  Sum_probs=21.9

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~  110 (119)
                      |....+.+|++++|.|..... ...+.||+
T Consensus         8 P~~~~~~~G~~vtl~C~~s~~-~~~~~WYr   36 (110)
T d2aq2a1           8 PRNKVAVTGEKVTLSCQQTNN-HNNMYWYR   36 (110)
T ss_dssp             CSEEEECTTCCEEEEEEESSC-CSEEEEEE
T ss_pred             CCeEEEcCCCCEEEEEEECCC-cCcEEEEE
Confidence            444557899999999987543 45799997

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.03  E-value=0.016  Score=27.87  Aligned_cols=28  Identities=18%  Similarity=0.291  Sum_probs=20.9

Q ss_pred             ccccCCCCcEEEEeEEccCC-CCeEEEEE
Q psy12725         83 DETLNPGPNYYFKCIASGNP-TPEISWYL  110 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p-~~~~~W~~  110 (119)
                      ...+.+|++++|.|...... ...+.||+
T Consensus         7 svsv~~G~~vtl~C~~s~~~~~~~l~WYr   35 (110)
T d2esvd1           7 SMDCAEGRAANLPCNHSTISGNEYVYWYR   35 (110)
T ss_dssp             EEEEETTSCEEEEEECTTCCTTEEEEEEE
T ss_pred             EEEECCCCCEEEEEEEcCCCCCCeEEEEE
Confidence            45677899999999865443 34688997

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=95.03  E-value=0.025  Score=27.79  Aligned_cols=31  Identities=19%  Similarity=0.383  Sum_probs=23.3

Q ss_pred             CCccccCCCCcEEEEeEEccCCC--CeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPT--PEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~  111 (119)
                      +....+.+|+++.|.|.+.|...  ..+.|++.
T Consensus         7 sG~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ   39 (120)
T d1dn0b1           7 WGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQ   39 (120)
T ss_dssp             ECCCEECTTSCEEEEEEEESSCCSSCCEEEEEE
T ss_pred             ECCcEECCCCCEEEEEEEccccCccCcceeeeE
Confidence            34456789999999999988643  36889864

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=94.96  E-value=0.029  Score=26.97  Aligned_cols=31  Identities=16%  Similarity=0.314  Sum_probs=21.2

Q ss_pred             CCccccCCCCcEEEEeEEccC----CCCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGN----PTPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~----p~~~~~W~~~  111 (119)
                      |....+.+|++++|.|.....    ....+.||+.
T Consensus         8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq   42 (111)
T d1j05a_           8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQ   42 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEc
Confidence            344557789999999986432    1234999963

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.96  E-value=0.025  Score=27.68  Aligned_cols=31  Identities=23%  Similarity=0.418  Sum_probs=23.0

Q ss_pred             CCccccCCCCcEEEEeEEccCCC--CeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPT--PEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~  111 (119)
                      +....+.+|+++.|.|.+.|...  ..+.|++.
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ   39 (118)
T d2jelh1           7 SGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQ   39 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceeccee
Confidence            34445789999999999987643  36888863

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.95  E-value=0.028  Score=27.41  Aligned_cols=30  Identities=23%  Similarity=0.523  Sum_probs=22.9

Q ss_pred             CccccCCCCcEEEEeEEccCCC--CeEEEEEC
Q psy12725         82 SDETLNPGPNYYFKCIASGNPT--PEISWYLD  111 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~  111 (119)
                      ....+.+|+++.|.|.+.|...  ..+.|++.
T Consensus         8 G~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ   39 (117)
T d1c5db1           8 GPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQ   39 (117)
T ss_dssp             CCSEECTTSCEEEEEEECSSCTTTCCEEEEEE
T ss_pred             CCceECCCCCeEEEEEEcCCCccCCceEcccC
Confidence            3446789999999999987643  36889863

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=94.94  E-value=0.03  Score=27.48  Aligned_cols=29  Identities=21%  Similarity=0.475  Sum_probs=22.3

Q ss_pred             CccccCCCCcEEEEeEEccCC--CCeEEEEE
Q psy12725         82 SDETLNPGPNYYFKCIASGNP--TPEISWYL  110 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~  110 (119)
                      ....+.+|+++.|.|.+.|..  ...+.|++
T Consensus         8 G~~~vkpG~sl~LsC~~SG~s~~~y~~~WvR   38 (120)
T d1dlfh_           8 GGGLVQPGGSMKLSCATSGFTFSDAWMDWVR   38 (120)
T ss_dssp             CCCEECTTCCEEEEEEEESSCTTTCEEEEEE
T ss_pred             CCceECCCCCeEEEEEECCccCcCCceEeee
Confidence            344578899999999998763  34788986

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=94.92  E-value=0.021  Score=28.32  Aligned_cols=31  Identities=26%  Similarity=0.514  Sum_probs=23.1

Q ss_pred             CCccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      +....+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         7 sG~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ   39 (127)
T d1i3ua_           7 SGGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQ   39 (127)
T ss_dssp             ESCEECCTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             ECCceECCCCCeEEEEEEcCCCCCCCceEeeee
Confidence            3344578899999999998763  346889864

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.91  E-value=0.026  Score=27.74  Aligned_cols=29  Identities=28%  Similarity=0.549  Sum_probs=21.8

Q ss_pred             ccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      ...+.+|+++.|.|.+.+..  ...+.|++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ   39 (120)
T d1pg7x1           9 PELVKPGASVKISCKASGYSFTGHLLNWVKQ   39 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeee
Confidence            34577899999999987753  336889864

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=94.90  E-value=0.032  Score=26.87  Aligned_cols=30  Identities=17%  Similarity=0.414  Sum_probs=21.9

Q ss_pred             CCccccCCCCcEEEEeEEccC--CCCeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGN--PTPEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~--p~~~~~W~~  110 (119)
                      |......+|++++|.|...+.  ....+.||+
T Consensus         7 P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyr   38 (113)
T d1vesa_           7 PRTATKETGESLTINCVLRDASFELKDTGWYR   38 (113)
T ss_dssp             CSEEEECTTCCEEEEEEEESCSSCCCEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCccceee
Confidence            344456799999999987543  344689996

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=94.90  E-value=0.024  Score=27.26  Aligned_cols=30  Identities=23%  Similarity=0.588  Sum_probs=21.8

Q ss_pred             CccccCCCCcEEEEeEEccC--CCCeEEEEEC
Q psy12725         82 SDETLNPGPNYYFKCIASGN--PTPEISWYLD  111 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~--p~~~~~W~~~  111 (119)
                      ....+.+|++++|.|...+.  ....+.||+.
T Consensus         8 ~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq   39 (111)
T d1rzfl1           8 PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQ   39 (111)
T ss_dssp             SEEEECTTSCEEEEEECCCCCCCTSCEEEEEE
T ss_pred             cceEeCCCCCEEEEEEECCcCCcCCcccceee
Confidence            34567899999999986543  2346999963

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.035  Score=26.30  Aligned_cols=32  Identities=22%  Similarity=0.454  Sum_probs=23.8

Q ss_pred             cCCCCcEEEEeEEccC-CC---CeEEEEECCEEccc
Q psy12725         86 LNPGPNYYFKCIASGN-PT---PEISWYLDGKKLVN  117 (119)
Q Consensus        86 ~~~g~~~~l~C~~~~~-p~---~~~~W~~~~~~~~~  117 (119)
                      ...+..+.|.|.+.+. |.   ..+.|++++..+..
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~   50 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHN   50 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECC
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCC
Confidence            4556789999999876 32   36789999987653

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.86  E-value=0.011  Score=28.12  Aligned_cols=27  Identities=19%  Similarity=0.537  Sum_probs=17.8

Q ss_pred             CCCCcEEEEeEEccCC-CC-eEEEEECCE
Q psy12725         87 NPGPNYYFKCIASGNP-TP-EISWYLDGK  113 (119)
Q Consensus        87 ~~g~~~~l~C~~~~~p-~~-~~~W~~~~~  113 (119)
                      ..++.+.|.|.+.|.. .. .|.|.+++.
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~   46 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSL   46 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCc
Confidence            3567899999998873 33 799976653

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.84  E-value=0.025  Score=27.54  Aligned_cols=29  Identities=31%  Similarity=0.572  Sum_probs=21.8

Q ss_pred             ccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      ...+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ   39 (115)
T d1f3dh1           9 PELVKPGASVKVSCKASGYSFIDYNIHWVKQ   39 (115)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeEE
Confidence            34577899999999988753  346889863

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.81  E-value=0.019  Score=27.63  Aligned_cols=30  Identities=13%  Similarity=0.314  Sum_probs=21.3

Q ss_pred             CCccccCCCCcEEEEeEEccC-CCCeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGN-PTPEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~  110 (119)
                      +....+.+|++++|.|..... ....+.||+
T Consensus         7 ~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyr   37 (114)
T d2ak4d1           7 QTEISVVEKEDVTLDCVYETRDTTYYLFWYK   37 (114)
T ss_dssp             CCEEEEETTCCEEECCEEECSCSSCEEEEEE
T ss_pred             CCeEEEeCCCCEEEEEEEcCCCcCccEEEEE
Confidence            344457889999999985433 344688997

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.80  E-value=0.027  Score=27.43  Aligned_cols=30  Identities=30%  Similarity=0.458  Sum_probs=23.0

Q ss_pred             CCccccCCCCcEEEEeEEccCCC--CeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPT--PEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~  110 (119)
                      +....+.+|+++.|.|.+.|...  ..+.|.+
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvR   38 (116)
T d1mjuh1           7 PGAELVKPGASVKLSCKASGYTFTNYWINWVK   38 (116)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ECCcEECCCCCEEEEEEEccCccccCceEeee
Confidence            44556789999999999987643  3688886

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.77  E-value=0.023  Score=27.39  Aligned_cols=28  Identities=21%  Similarity=0.386  Sum_probs=20.5

Q ss_pred             ccccCCCCcEEEEeEEccCCC---CeEEEEE
Q psy12725         83 DETLNPGPNYYFKCIASGNPT---PEISWYL  110 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~---~~~~W~~  110 (119)
                      ...+.+|++++|.|...+...   ..+.||+
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~Wyr   39 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQ   39 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEE
Confidence            445789999999999864322   2488996

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.75  E-value=0.024  Score=27.54  Aligned_cols=31  Identities=26%  Similarity=0.557  Sum_probs=23.2

Q ss_pred             CCccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      +....+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         7 SG~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ   39 (114)
T d1indh1           7 SGGDSVKPGGSLKLSCAASGFTLSGETMSWVRQ   39 (114)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ECCceECCCCCEEEEEEECccCccCCceecccc
Confidence            3345678999999999998764  336888863

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.75  E-value=0.031  Score=27.37  Aligned_cols=29  Identities=38%  Similarity=0.705  Sum_probs=22.3

Q ss_pred             ccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      ...+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ   38 (119)
T d1kxvc_           8 GGTVPAGGSLRLSCAASGNTLCTYDMSWYRR   38 (119)
T ss_dssp             CEEECTTCCEEEEEEEESCTTCCEEEEEEEE
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceeeeee
Confidence            34578899999999998764  336889874

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.73  E-value=0.033  Score=27.47  Aligned_cols=30  Identities=20%  Similarity=0.571  Sum_probs=23.0

Q ss_pred             CccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         82 SDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      ....+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         7 G~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ   38 (124)
T d1zvya1           7 GGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQ   38 (124)
T ss_dssp             CCEECCTTCCEEEEEEEESCSTTCCEEEEEEE
T ss_pred             CCceECCCCCeEEEEEEcCccccccccccccc
Confidence            344678999999999998764  346889864

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=94.70  E-value=0.029  Score=27.41  Aligned_cols=30  Identities=27%  Similarity=0.465  Sum_probs=22.4

Q ss_pred             CccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         82 SDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      ....+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         8 g~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ   39 (118)
T d1nlbh1           8 GPELKKPGETVKISCKASGYTFTDFSMHWVNQ   39 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceecccc
Confidence            344578999999999998764  346888863

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.68  E-value=0.041  Score=26.64  Aligned_cols=29  Identities=21%  Similarity=0.293  Sum_probs=20.1

Q ss_pred             cccCCCCcEEEEeEEccCC---CCeEEEEECC
Q psy12725         84 ETLNPGPNYYFKCIASGNP---TPEISWYLDG  112 (119)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~p---~~~~~W~~~~  112 (119)
                      ..+..|+.++|.|......   ...+.|++.+
T Consensus        12 V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~   43 (126)
T d1pkoa_          12 IRALVGDEAELPCRISPGKNATGMEVGWYRSP   43 (126)
T ss_dssp             EEEETTSCEEEEEEEESCCCCTTSEEEEEEC-
T ss_pred             EEEEcCCcEEEEEEEECcCCCCceEEEEeecC
Confidence            3456899999999864322   3368999864

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=94.67  E-value=0.044  Score=26.79  Aligned_cols=30  Identities=23%  Similarity=0.479  Sum_probs=22.6

Q ss_pred             CCccccCCCCcEEEEeEEccCC--CCeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGNP--TPEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~  110 (119)
                      +....+.+|+++.|.|.+.|..  ...+.|.+
T Consensus         7 sG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvR   38 (118)
T d1ct8b1           7 SGAVLVKPGASVKLSCKTSGFTFSSSYINWLK   38 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCSTTCEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEccccCCCCCCcccE
Confidence            3445678899999999998753  34688876

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=94.67  E-value=0.033  Score=26.81  Aligned_cols=31  Identities=16%  Similarity=0.216  Sum_probs=21.4

Q ss_pred             CCccccCCCCcEEEEeEEccC-C---CCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGN-P---TPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~-p---~~~~~W~~~  111 (119)
                      |....+.+|++++|.|..... .   ...+.||+.
T Consensus         8 P~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ   42 (111)
T d2gsia1           8 PASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQ   42 (111)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCccceEEEEE
Confidence            344567799999999986532 1   224899974

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.66  E-value=0.021  Score=27.58  Aligned_cols=29  Identities=10%  Similarity=0.295  Sum_probs=21.2

Q ss_pred             CccccCCCCcEEEEeEEccC-CCCeEEEEE
Q psy12725         82 SDETLNPGPNYYFKCIASGN-PTPEISWYL  110 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~  110 (119)
                      ....+.+|++++|.|..... ....+.||+
T Consensus         7 ~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYr   36 (115)
T d1fo0a_           7 TSISVMEKTTVTMDCVYETQDSSYFLFWYK   36 (115)
T ss_dssp             CEEEEETTCCEEECCEECCCCSSCEEEEEE
T ss_pred             CEEEEcCCCCEEEEEEEcCCCCCCCCEEEE
Confidence            34467889999999986433 344688997

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.64  E-value=0.051  Score=26.64  Aligned_cols=29  Identities=17%  Similarity=0.409  Sum_probs=21.3

Q ss_pred             ccccCCCCcEEEEeEEccCC----CCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGNP----TPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p----~~~~~W~~~  111 (119)
                      ...+.+|++++|.|.+.|..    ...+.|++.
T Consensus         9 ~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ   41 (120)
T d2agjh1           9 PTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQ   41 (120)
T ss_dssp             CSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEE
T ss_pred             CeeECCCCCEEEEEEEcccCccCCCCeEeeccc
Confidence            44578899999999987642    235789974

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=94.63  E-value=0.039  Score=26.90  Aligned_cols=30  Identities=17%  Similarity=0.389  Sum_probs=22.6

Q ss_pred             CccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         82 SDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      ....+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ   39 (116)
T d1a2yb_           8 GPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQ   39 (116)
T ss_dssp             CCSEECTTSCEEEEEEEESSCTTSSEEEEEEE
T ss_pred             CCceECCCCCeEEEEEEcccccCCCCCccceE
Confidence            344578899999999998764  336888864

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.62  E-value=0.027  Score=27.48  Aligned_cols=30  Identities=23%  Similarity=0.454  Sum_probs=23.0

Q ss_pred             CccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         82 SDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      ....+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ   39 (117)
T d1jpth1           8 GGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQ   39 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEccee
Confidence            344678899999999998864  346888864

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.046  Score=25.40  Aligned_cols=39  Identities=18%  Similarity=0.306  Sum_probs=27.6

Q ss_pred             CCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCE
Q psy12725         73 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK  113 (119)
Q Consensus        73 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~  113 (119)
                      .+|.+...+. ..+..|++++|.|... .....+.++|+|.
T Consensus         3 pkPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~L~Keg~   41 (93)
T d1olla2           3 DTPTLSVHPG-PEVISGEKVTFYCRLD-TATSMFLLLKEGR   41 (93)
T ss_dssp             CCCEEEEESC-SEEETTCEEEEEEECS-SSCSEEEEEEESS
T ss_pred             CCCEEEEeCC-CcccCCCcEEEEECCC-CCCCEEEEEECCC
Confidence            4666666554 3578899999999753 2345788888764

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.50  E-value=0.037  Score=27.21  Aligned_cols=31  Identities=26%  Similarity=0.499  Sum_probs=23.1

Q ss_pred             CCccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      +....+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         7 sg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ   39 (121)
T d1j05b_           7 SGAELVEPGASVKLSCTASGFNIKDTYMHWVKQ   39 (121)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEecCCCCCCCcceeeE
Confidence            3445678999999999987753  346889863

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=94.48  E-value=0.041  Score=27.00  Aligned_cols=28  Identities=21%  Similarity=0.521  Sum_probs=20.9

Q ss_pred             cccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         84 ETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      ....+|+++.|.|.+.+..  ...+.||+.
T Consensus        11 ~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ   40 (123)
T d1hxmb1          11 STKTLSKTARLECVVSGITISATSVYWYRE   40 (123)
T ss_dssp             EEEETTCCEEEEEEEESSCTTTSCEEEEEE
T ss_pred             EEeCCCCCEEEEEEEcCCCcccCeEEEEEE
Confidence            3456799999999987653  346899973

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.05  Score=24.49  Aligned_cols=31  Identities=19%  Similarity=0.374  Sum_probs=23.3

Q ss_pred             CCCcEEEEeEEccCCCC--eEEEEECCEEcccC
Q psy12725         88 PGPNYYFKCIASGNPTP--EISWYLDGKKLVNA  118 (119)
Q Consensus        88 ~g~~~~l~C~~~~~p~~--~~~W~~~~~~~~~~  118 (119)
                      .|..+.|.|.......+  .-.|.|+|+.|.++
T Consensus        11 ~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed   43 (80)
T d3b5ha2          11 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKED   43 (80)
T ss_dssp             ETTEEEEEEEEESCSSCCCEEEEESSSEEEECT
T ss_pred             CCCCEEEEEECCCCCCceeeeEEeeCCEEcccc
Confidence            45677899987655433  68999999998764

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=94.46  E-value=0.046  Score=26.71  Aligned_cols=30  Identities=30%  Similarity=0.560  Sum_probs=22.8

Q ss_pred             CccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         82 SDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      ....+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         8 g~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ   39 (118)
T d1lo4h1           8 GGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQ   39 (118)
T ss_dssp             CCCEECTTCCEEEEEEEESSCTTTSEEEEEEE
T ss_pred             CCceECCCCCeEEEEEECCCcccCCCcccccC
Confidence            344578899999999998764  347889864

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.015  Score=27.15  Aligned_cols=27  Identities=19%  Similarity=0.330  Sum_probs=21.1

Q ss_pred             cCCCCcEEEEeEEccCCCCeEEEEECC
Q psy12725         86 LNPGPNYYFKCIASGNPTPEISWYLDG  112 (119)
Q Consensus        86 ~~~g~~~~l~C~~~~~p~~~~~W~~~~  112 (119)
                      ..+|++++|.|.........+.|++..
T Consensus         6 ~~~G~svtL~C~~s~~~~~~~~W~~~~   32 (97)
T d2nxyb1           6 GKKGDTVELTCTASQKKSIQFHWKNSN   32 (97)
T ss_dssp             EETTSCEEECCBCSSSSCCCEEEEETT
T ss_pred             EEcCCcEEEEEEEecCCCceEEEEEeC
Confidence            357999999998766556689999753

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=94.46  E-value=0.043  Score=26.39  Aligned_cols=29  Identities=17%  Similarity=0.431  Sum_probs=21.7

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~  110 (119)
                      |....+.+|+.++|.|..... ...+.||+
T Consensus         8 P~~~~v~~G~~vtl~C~~~~~-~~~~~WYr   36 (113)
T d1h5ba_           8 PSALSLHEGTDSALRCNFTTT-MRSVQWFR   36 (113)
T ss_dssp             CSEEEEETTCCEEEEEEESSC-CSEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEEecC-CccceEEE
Confidence            344556789999999987643 45789997

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.45  E-value=0.039  Score=26.92  Aligned_cols=30  Identities=23%  Similarity=0.388  Sum_probs=22.3

Q ss_pred             CCccccCCCCcEEEEeEEccCC--CCeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGNP--TPEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~  110 (119)
                      +....+.+|+++.|.|.+.|..  ...+.|++
T Consensus         7 sg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvR   38 (117)
T d1mfah1           7 SGTVVARPGASVKMSCKASGYTFTNYWMHWIK   38 (117)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEcccCCCCCceEeee
Confidence            3444567899999999998753  34688876

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.41  E-value=0.037  Score=27.09  Aligned_cols=31  Identities=26%  Similarity=0.407  Sum_probs=23.2

Q ss_pred             CCccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      +....+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         7 sg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ   39 (119)
T d1rz7h1           7 SGAEVKKPGATVKISCKASGYTFSDFYMYWVRQ   39 (119)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCceEcccc
Confidence            3444578899999999998864  336889863

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.024  Score=26.85  Aligned_cols=31  Identities=19%  Similarity=0.325  Sum_probs=21.3

Q ss_pred             cCCCCcEEEEeEEccC-CC---CeEEEEECCEEcc
Q psy12725         86 LNPGPNYYFKCIASGN-PT---PEISWYLDGKKLV  116 (119)
Q Consensus        86 ~~~g~~~~l~C~~~~~-p~---~~~~W~~~~~~~~  116 (119)
                      +..+..++|.|.+.+. |.   ..+.|++++....
T Consensus        13 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~   47 (103)
T d1fp5a1          13 LFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPV   47 (103)
T ss_dssp             HHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCC
T ss_pred             HhhCCCeEEEEEEEeeECCCceEEEEEcCCCceec
Confidence            3345678999999886 43   2567888776543

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.36  E-value=0.037  Score=27.34  Aligned_cols=30  Identities=30%  Similarity=0.510  Sum_probs=22.4

Q ss_pred             CCccccCCCCcEEEEeEEccCC--CCeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGNP--TPEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~  110 (119)
                      +....+.+|+++.|.|.+.|..  ...+.|++
T Consensus         7 sg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvR   38 (125)
T d1rihh1           7 SGNELAKPGASMKMSCRASGYSFTSYWIHWLK   38 (125)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ECCceECCCCCEEEEEEEccCCCCCCCCcccc
Confidence            3444678899999999998764  23688876

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.35  E-value=0.057  Score=26.69  Aligned_cols=30  Identities=23%  Similarity=0.406  Sum_probs=22.7

Q ss_pred             CCccccCCCCcEEEEeEEccCCC--CeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPT--PEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~  110 (119)
                      +....+.+|+++.|.|.+.|...  ..+.|++
T Consensus         6 sG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvR   37 (126)
T d1lmka1           6 SGTELMKPGRSLKISCKTTGYIFSNYWIEWVK   37 (126)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTTEEEEEEE
T ss_pred             ECCceECCCCCeEEEEEEccCCCCCCCCccee
Confidence            34456788999999999988643  3688886

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=94.32  E-value=0.046  Score=26.22  Aligned_cols=31  Identities=19%  Similarity=0.426  Sum_probs=22.2

Q ss_pred             CCccccCCCCcEEEEeEEccC---CCCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGN---PTPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~---p~~~~~W~~~  111 (119)
                      |....+.+|++++|.|...+.   ....+.||+.
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ   40 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQ   40 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeee
Confidence            345567899999999986543   2235899973

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=94.30  E-value=0.059  Score=25.92  Aligned_cols=29  Identities=17%  Similarity=0.422  Sum_probs=21.3

Q ss_pred             CccccCCCCcEEEEeEEccC--CCCeEEEEE
Q psy12725         82 SDETLNPGPNYYFKCIASGN--PTPEISWYL  110 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~--p~~~~~W~~  110 (119)
                      ......+|++++|.|...+.  ....+.||+
T Consensus         7 ~s~t~~~G~svtl~C~~s~~s~~~~~i~WYr   37 (112)
T d1sq2n_           7 RSVTKETGESLTINCVLRDASYALGSTCWYR   37 (112)
T ss_dssp             SEEEECTTCCEEEEEEECSCSSCCCCEEEEE
T ss_pred             CEEEEcCCCCEEEEEEECCCcccCCceEEEE
Confidence            34456789999999987543  345799996

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.012  Score=27.91  Aligned_cols=26  Identities=23%  Similarity=0.579  Sum_probs=19.5

Q ss_pred             CCCcEEEEeEEccC-CCC-eEEEEECCE
Q psy12725         88 PGPNYYFKCIASGN-PTP-EISWYLDGK  113 (119)
Q Consensus        88 ~g~~~~l~C~~~~~-p~~-~~~W~~~~~  113 (119)
                      .+..+.|.|.+.+. |.. .|.|.+++.
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~   46 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGAL   46 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCC
Confidence            35679999999887 333 799987764

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=94.25  E-value=0.042  Score=27.48  Aligned_cols=31  Identities=23%  Similarity=0.464  Sum_probs=23.1

Q ss_pred             CCccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      +....+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         7 SG~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ   39 (135)
T d1ieha_           7 SGGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQ   39 (135)
T ss_dssp             ECCCEECTTCEEEEEEEEESSCTTTSCEEEEEE
T ss_pred             ECCceECCCCCeEEEEEEcCCCCcCCceecccc
Confidence            3445678999999999998764  346888863

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.22  E-value=0.042  Score=27.19  Aligned_cols=30  Identities=30%  Similarity=0.416  Sum_probs=22.7

Q ss_pred             CCccccCCCCcEEEEeEEccCCC--CeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPT--PEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~  110 (119)
                      +....+++|+++.|.|.+.|...  ..+.|.+
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvR   38 (127)
T d1n0xh1           7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVR   38 (127)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCCEEEEE
Confidence            34456788999999999987642  3678886

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.22  E-value=0.022  Score=26.63  Aligned_cols=29  Identities=17%  Similarity=0.477  Sum_probs=22.4

Q ss_pred             CCCCcEEEEeEEccCCCCeEEEEECCEEccc
Q psy12725         87 NPGPNYYFKCIASGNPTPEISWYLDGKKLVN  117 (119)
Q Consensus        87 ~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~  117 (119)
                      ..|.+|.|+|...+.  -.+.|.+++..+..
T Consensus        12 ISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g   40 (100)
T d1jbja2          12 ISGTSVELTCPLDSD--ENLKWEKNGQELPQ   40 (100)
T ss_dssp             EETTEEEEECSSCCC--TTCEEEETTEEECS
T ss_pred             EeCCEEEEECCCCCC--CceEEeeccccCCC
Confidence            468899999975432  36999999988764

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.22  E-value=0.034  Score=27.18  Aligned_cols=30  Identities=27%  Similarity=0.439  Sum_probs=22.6

Q ss_pred             CccccCCCCcEEEEeEEccCCC--CeEEEEEC
Q psy12725         82 SDETLNPGPNYYFKCIASGNPT--PEISWYLD  111 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~  111 (119)
                      ....+.+|+++.|.|.+.|...  ..+.|++.
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ   39 (118)
T d2fbjh1           8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQ   39 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CCceECCCCCEEEEEEECCccccCCceeeeee
Confidence            3446788999999999988643  36888863

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=94.21  E-value=0.037  Score=27.22  Aligned_cols=30  Identities=20%  Similarity=0.369  Sum_probs=22.6

Q ss_pred             CccccCCCCcEEEEeEEccCCC--CeEEEEEC
Q psy12725         82 SDETLNPGPNYYFKCIASGNPT--PEISWYLD  111 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~  111 (119)
                      ....+.+|+++.|.|.+.|...  ..+.|++.
T Consensus         8 g~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ   39 (122)
T d1q9rb1           8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQ   39 (122)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccCcccc
Confidence            3446788999999999987643  36889864

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.20  E-value=0.037  Score=27.25  Aligned_cols=30  Identities=27%  Similarity=0.574  Sum_probs=22.6

Q ss_pred             CccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         82 SDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      ....+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         8 G~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ   39 (123)
T d1mqkh_           8 GGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQ   39 (123)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CCceECCCCCEEEEEEECcccCcCCceEeeec
Confidence            344678999999999998764  336888863

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.16  E-value=0.032  Score=27.35  Aligned_cols=29  Identities=34%  Similarity=0.618  Sum_probs=21.7

Q ss_pred             ccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      ...+.+|++++|.|.+.|..  ...+.|++.
T Consensus         9 ~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ   39 (119)
T d1qnzh_           9 AELVKPGASVKMSCKASGYTFTTYPIEWMKQ   39 (119)
T ss_dssp             CCEECTTEEEEEEEEEETCCSSSSCEEEEEE
T ss_pred             CceECCCCCEEEEEEEeccCCCCCCcceeee
Confidence            34577899999999987653  346899864

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.12  E-value=0.034  Score=26.78  Aligned_cols=28  Identities=18%  Similarity=0.305  Sum_probs=21.0

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      ...+.+|++++|.|... .....+.||+.
T Consensus         8 ~~~~~~G~svtl~C~~s-~~~~~~~WYrQ   35 (114)
T d1ogae1           8 YLFRKEGQNVTLSCEQN-LNHDAMYWYRQ   35 (114)
T ss_dssp             EEEEETTCCEEECCEEC-SCCSEEEEEEE
T ss_pred             eEEEcCCCCEEEEEEEe-cCCCcEEEEee
Confidence            34577899999999875 33457999963

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.11  E-value=0.035  Score=27.25  Aligned_cols=30  Identities=23%  Similarity=0.394  Sum_probs=22.7

Q ss_pred             CCccccCCCCcEEEEeEEccCCC--CeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPT--PEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~  110 (119)
                      +....+.+|+++.|.|.+.|...  ..+.|++
T Consensus         7 SG~~~vkPG~sl~LsC~~SG~~~~~~~~~WvR   38 (121)
T d1nfdf1           7 SGGDLVQPGSSLKVSCAASGFTFSDFWMYWVR   38 (121)
T ss_dssp             ECCEEECTTCEEEEEEEEESSCGGGEEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCceeece
Confidence            34456789999999999988643  3578886

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.10  E-value=0.023  Score=27.69  Aligned_cols=29  Identities=21%  Similarity=0.450  Sum_probs=22.3

Q ss_pred             CccccCCCCcEEEEeEEccCC--CCeEEEEE
Q psy12725         82 SDETLNPGPNYYFKCIASGNP--TPEISWYL  110 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~  110 (119)
                      ....+.+|+++.|.|.+.|..  ...+.|++
T Consensus         8 g~~~vkPg~sl~LsC~~SG~~~~~y~~~WvR   38 (116)
T d1fn4b1           8 GPGLVRPSETLSLTCTVSGFSLTSFSVSWVR   38 (116)
T ss_dssp             CCSBCCTTSEECCEEECCSSCTTSSEEEEEE
T ss_pred             CCceECCCCCeEEEEEEeCcccccCccceee
Confidence            344678999999999998764  33688986

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=94.03  E-value=0.066  Score=25.77  Aligned_cols=31  Identities=19%  Similarity=0.331  Sum_probs=21.9

Q ss_pred             CCccccCCCCcEEEEeEEccC-----CCCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGN-----PTPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~-----p~~~~~W~~~  111 (119)
                      |....+.+|++++|.|...+.     ....+.||+.
T Consensus         9 P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ   44 (113)
T d1n4xl_           9 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQ   44 (113)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEeccccccCCCceEeEEEec
Confidence            444567899999999987542     2246899963

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.96  E-value=0.08  Score=26.41  Aligned_cols=30  Identities=30%  Similarity=0.484  Sum_probs=22.6

Q ss_pred             CCccccCCCCcEEEEeEEccCCC--CeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPT--PEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~  110 (119)
                      +....+.+|+++.|.|.+.|...  ..+.|++
T Consensus         6 sG~~~vkPg~sl~LsC~~SG~~~s~y~~~WvR   37 (133)
T d1rzfh1           6 SGAEVNKPGSSVKVSCQASGATLNSHAFSWVR   37 (133)
T ss_dssp             CCCEEECTTCCEEEEEEESSSCSTTEEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCccCCCCccce
Confidence            34446788999999999988643  3688876

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.91  E-value=0.071  Score=26.38  Aligned_cols=29  Identities=34%  Similarity=0.590  Sum_probs=21.7

Q ss_pred             CccccCCCCcEEEEeEEccCC--CCeEEEEE
Q psy12725         82 SDETLNPGPNYYFKCIASGNP--TPEISWYL  110 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~  110 (119)
                      ....+.+|+++.|.|.+.|..  ...+.|.+
T Consensus         8 g~~~~kPg~sl~LsC~~SG~s~~~y~~~WvR   38 (127)
T d2fx7h1           8 GAEVKRPGSSVTVSCKASGGSFSTYALSWVR   38 (127)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTSCEEEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCeEEEE
Confidence            334567899999999998753  33688886

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.88  E-value=0.043  Score=27.06  Aligned_cols=29  Identities=24%  Similarity=0.375  Sum_probs=21.8

Q ss_pred             CccccCCCCcEEEEeEEccCCC--CeEEEEE
Q psy12725         82 SDETLNPGPNYYFKCIASGNPT--PEISWYL  110 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~  110 (119)
                      ....+.+|+++.|.|.+.|...  ..+.|++
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~W~R   38 (124)
T d2b1hh1           8 GAEVKKSGESLKISCQTSGYSFSDYWIGWVR   38 (124)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCcCccce
Confidence            3445678999999999987643  3578886

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=93.85  E-value=0.049  Score=26.23  Aligned_cols=31  Identities=16%  Similarity=0.282  Sum_probs=21.5

Q ss_pred             CCccccCCCCcEEEEeEEccCC-----CCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNP-----TPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p-----~~~~~W~~~  111 (119)
                      |....+.+|++++|.|...+..     ...+.||+.
T Consensus         8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ   43 (112)
T d1ncwl1           8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQ   43 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEc
Confidence            4445678999999999864322     235889963

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=93.82  E-value=0.052  Score=26.59  Aligned_cols=29  Identities=21%  Similarity=0.426  Sum_probs=21.4

Q ss_pred             ccccCCCCcEEEEeEEccCCC----CeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGNPT----PEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~----~~~~W~~~  111 (119)
                      ...+.+|+++.|.|.+.|...    ..+.|++.
T Consensus         9 ~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ   41 (120)
T d1ai1h1           9 PAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQ   41 (120)
T ss_dssp             CSEECSSSCEEEEEEEESSCTTSTTEEEEEEEE
T ss_pred             CceECCCCCEEEEEEEcccccccCccccCcccC
Confidence            445788999999999887532    25789864

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=93.81  E-value=0.045  Score=26.92  Aligned_cols=29  Identities=24%  Similarity=0.473  Sum_probs=21.9

Q ss_pred             ccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      ...+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ   39 (122)
T d1bz7b1           9 GGLVQPGGSRKLSCAASGFTFSNFGMHWVRQ   39 (122)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceEcccc
Confidence            34567899999999998764  336888863

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.80  E-value=0.064  Score=26.27  Aligned_cols=31  Identities=29%  Similarity=0.442  Sum_probs=22.9

Q ss_pred             CCccccCCCCcEEEEeEEccCCC--CeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPT--PEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~  111 (119)
                      +....+.+|+++.|.|.+.|...  ..+.|.+.
T Consensus         7 sg~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ   39 (120)
T d1ad9b1           7 SGAEVKKPGSSVKVSCKASGYTFTDYYINWMRQ   39 (120)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCccccceE
Confidence            34456788999999999987643  36888763

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=93.77  E-value=0.066  Score=26.17  Aligned_cols=29  Identities=14%  Similarity=0.383  Sum_probs=22.0

Q ss_pred             CccccCCCCcEEEEeEEccCCC---CeEEEEE
Q psy12725         82 SDETLNPGPNYYFKCIASGNPT---PEISWYL  110 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p~---~~~~W~~  110 (119)
                      ....+.+|+++.|.|.+.|...   ..+.|.+
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvR   39 (119)
T d1ncwh1           8 GPGLVKPSQSLSLTCTVTGYSITSDFAWNWIR   39 (119)
T ss_dssp             SCSEECTTSCEEEEEEEESSCTTSSEEEEEEE
T ss_pred             CCcEECCCCCEEEEEEEccccccCCCccccce
Confidence            3446788999999999988643   2478875

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.73  E-value=0.071  Score=25.17  Aligned_cols=30  Identities=23%  Similarity=0.443  Sum_probs=21.5

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      |....+.+|++++|.|..... ...+.||+.
T Consensus         7 P~~l~~~~G~~vtl~C~~s~~-~~~~~WYrQ   36 (104)
T d1yqvl1           7 PAIMSASPGEKVTMTCSASSS-VNYMYWYQQ   36 (104)
T ss_dssp             SSEEEECTTCCEEEEEEESSC-CSCCEEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCC-CCccEEEEe
Confidence            344567899999999986433 345889964

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.12  Score=23.99  Aligned_cols=39  Identities=18%  Similarity=0.334  Sum_probs=26.9

Q ss_pred             CCCeeeecCCccccCCCCcEEEEeEEccCCCCeEEEEECCE
Q psy12725         73 DPPVIKESFSDETLNPGPNYYFKCIASGNPTPEISWYLDGK  113 (119)
Q Consensus        73 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~  113 (119)
                      .+|.+...+. ..+..|+.++|.|... .+...+.++|+|.
T Consensus         3 PkP~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~keg~   41 (96)
T d1ugna1           3 PKPTLWAEPG-SVITQGSPVTLRCQGG-QETQEYRLYREKK   41 (96)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECC-TTCCCEEEEESSS
T ss_pred             CCCEEEeECC-CccCCCCcEEEEEeCC-CCCCEEEEEECCC
Confidence            3555555444 4578999999999853 3444788888875

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=93.68  E-value=0.058  Score=26.67  Aligned_cols=30  Identities=17%  Similarity=0.556  Sum_probs=21.7

Q ss_pred             CccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         82 SDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      ....+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         7 G~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ   38 (126)
T d1rjca1           7 GGGSVQAGQSLRLSCATSGATSSSNCMGWFRQ   38 (126)
T ss_dssp             CCEEECTTCCEEEEEECC-CTTTCSEEEEEEE
T ss_pred             CCceECCCCCeEEEEEECCCCCcCCceEeeee
Confidence            344578899999999998753  346888863

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.59  E-value=0.071  Score=26.42  Aligned_cols=30  Identities=27%  Similarity=0.488  Sum_probs=22.2

Q ss_pred             CCccccCCCCcEEEEeEEccCCCC--eEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTP--EISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~  110 (119)
                      +....+.+|+++.|.|.+.|....  .+.|.+
T Consensus         7 sG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvR   38 (128)
T d2nxyd1           7 SGAEVKKPGSSVKVSCKASGDTFIRYSFTWVR   38 (128)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGEEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCccCCCcccce
Confidence            334457889999999999886433  578875

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.53  E-value=0.053  Score=26.96  Aligned_cols=31  Identities=29%  Similarity=0.509  Sum_probs=22.9

Q ss_pred             CCccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         81 FSDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      +....+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ   39 (130)
T d1rzga1           7 SGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQ   39 (130)
T ss_dssp             CCCEEECTTCCEEEEEECCSSCGGGCCEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCceEcccc
Confidence            3444578899999999998763  346888863

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=93.53  E-value=0.054  Score=26.78  Aligned_cols=30  Identities=23%  Similarity=0.504  Sum_probs=22.4

Q ss_pred             CccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         82 SDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      ....+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         8 g~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ   39 (126)
T d1dfbh1           8 GGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQ   39 (126)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CCceECCCCCeEEEEEECCccccCCcceecee
Confidence            344578899999999998764  336888863

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=93.52  E-value=0.05  Score=26.69  Aligned_cols=29  Identities=21%  Similarity=0.478  Sum_probs=21.9

Q ss_pred             ccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      ...+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ   39 (121)
T d2p49b1           9 GGLVQAGGSLRLSCAASGYAYTYIYMGWFRQ   39 (121)
T ss_dssp             CEEEETTCCEEEEEEEESCSSCCSEEEEEEE
T ss_pred             CceECCCCCeEEEEEEcCCCcccCceeeccC
Confidence            34567899999999998753  346888864

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.48  E-value=0.058  Score=25.84  Aligned_cols=27  Identities=19%  Similarity=0.386  Sum_probs=20.3

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYL  110 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~  110 (119)
                      ...+.+|++++|.|..... ...+.||+
T Consensus         8 ~~~~~~G~svtl~C~~~~~-~~~~~WYr   34 (113)
T d2ntsp1           8 YLIKTRGQQVTLSCSPISG-HRSVSWYQ   34 (113)
T ss_dssp             EEEEETTCCEEEEEECSTT-CCEEEEEE
T ss_pred             eEEECCCCCEEEEEEECCC-CCEEEEEE
Confidence            3456789999999986443 35789997

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.45  E-value=0.083  Score=25.26  Aligned_cols=27  Identities=22%  Similarity=0.475  Sum_probs=20.4

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYL  110 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~  110 (119)
                      ...+.+|++++|.|.... ....+.||+
T Consensus         8 ~~~~~~G~svtl~C~~s~-~~~~~~WYr   34 (112)
T d2bnub1           8 FQVLKTGQSMTLQCAQDM-NHEYMSWYR   34 (112)
T ss_dssp             EEEEETTCCEEEEEEESS-CCSEEEEEE
T ss_pred             eEEECCCCCEEEEEEEEC-CccceEecc
Confidence            335678999999998643 345799996

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=93.42  E-value=0.055  Score=26.12  Aligned_cols=29  Identities=21%  Similarity=0.358  Sum_probs=21.4

Q ss_pred             CCccccCCCCcEEEEeEEccCCCCeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGNPTPEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~  110 (119)
                      |....+.+|++++|.|...+. ...+.||+
T Consensus         7 P~~~~~~~G~svtl~C~~s~~-~~~~~WYr   35 (115)
T d1ogad1           7 PQFLSIQEGENLTVYCNSSSV-FSSLQWYR   35 (115)
T ss_dssp             CSEEEEETTCCEEEEEECSSC-CSCEEEEE
T ss_pred             CCeEEECCCCCEEEEEEECCC-CceEEEEe
Confidence            334457799999999986543 34789997

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=93.40  E-value=0.073  Score=25.40  Aligned_cols=28  Identities=14%  Similarity=0.449  Sum_probs=20.4

Q ss_pred             ccccCCCCcEEEEeEEccCCCCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGNPTPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  111 (119)
                      ...+.+|++++|.|.... ....+.||+.
T Consensus         8 ~~~~~~G~svtl~C~~~~-~~~~~~WYrQ   35 (111)
T d2esve1           8 HSVIEKGQTVTLRCDPIS-GHDNLYWYRR   35 (111)
T ss_dssp             EEEEETTCCEEEEEECCT-TCSEEEEEEE
T ss_pred             EEEECCCCCEEEEEEECC-CCceEEEEEE
Confidence            445678999999998543 2457999963

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.37  E-value=0.066  Score=26.37  Aligned_cols=30  Identities=27%  Similarity=0.448  Sum_probs=22.6

Q ss_pred             CCccccCCCCcEEEEeEEccCC--CCeEEEEE
Q psy12725         81 FSDETLNPGPNYYFKCIASGNP--TPEISWYL  110 (119)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~  110 (119)
                      +....+.+|+++.|.|.+.|..  ...+.|.+
T Consensus         7 sG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvR   38 (124)
T d1yedb1           7 SGPELVRPGTSVKLSCKTSGYIFTSYWIHWLK   38 (124)
T ss_dssp             CCCEEECTTCEEEEEEEEESSCGGGSCEEEEE
T ss_pred             eCCceECCCCCEEEEEEEcCCCccCCccccce
Confidence            3444578899999999998764  33688886

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=93.20  E-value=0.07  Score=26.41  Aligned_cols=30  Identities=20%  Similarity=0.461  Sum_probs=22.2

Q ss_pred             CccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         82 SDETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      ....+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         8 G~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ   39 (127)
T d2fb4h1           8 GGGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQ   39 (127)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CCceECCCCCeEEEEEECCCCccCCceeeeec
Confidence            344578899999999998763  336888863

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.17  E-value=0.055  Score=26.55  Aligned_cols=29  Identities=28%  Similarity=0.625  Sum_probs=21.6

Q ss_pred             ccccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      ...+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ   39 (121)
T d1ol0a_           9 GGLVQPGGSLRLSCAASGFTFSSYAMSWFRQ   39 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CceECCCCCeEEEEEEcCcCCcCCceEccee
Confidence            34568899999999998753  336888863

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.16  E-value=0.092  Score=26.15  Aligned_cols=29  Identities=17%  Similarity=0.376  Sum_probs=21.4

Q ss_pred             ccccCCCCcEEEEeEEccCC----CCeEEEEEC
Q psy12725         83 DETLNPGPNYYFKCIASGNP----TPEISWYLD  111 (119)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~p----~~~~~W~~~  111 (119)
                      ...+.+|+++.|.|.+.|..    ...+.|++.
T Consensus         9 ~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ   41 (132)
T d1tjgh1           9 PPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQ   41 (132)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTCEEEEEEE
T ss_pred             CeeECCCCCeEEEEEEeCCCcCCCCCceEEEEE
Confidence            34578899999999987653    125889863

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=93.15  E-value=0.055  Score=25.94  Aligned_cols=27  Identities=30%  Similarity=0.634  Sum_probs=19.5

Q ss_pred             ccCCCCcEEEEeEEccCC--CCeEEEEEC
Q psy12725         85 TLNPGPNYYFKCIASGNP--TPEISWYLD  111 (119)
Q Consensus        85 ~~~~g~~~~l~C~~~~~p--~~~~~W~~~  111 (119)
                      .+.+|+++.|.|.+.|..  ...+.|++.
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ   32 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQ   32 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEE
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEe
Confidence            467899999999987752  346888864